Query 040938
Match_columns 487
No_of_seqs 203 out of 1491
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aoz_A Ascorbate oxidase; oxid 100.0 7.4E-89 2.5E-93 725.9 47.1 452 1-487 62-538 (552)
2 3sqr_A Laccase; multicopper ox 100.0 9.3E-85 3.2E-89 689.4 44.6 404 1-471 126-546 (580)
3 1zpu_A Iron transport multicop 100.0 6.9E-83 2.3E-87 675.3 39.2 403 1-470 62-482 (534)
4 3pxl_A Laccase; 4-copper prote 100.0 7.7E-83 2.6E-87 667.3 38.7 399 1-468 66-470 (499)
5 3t6v_A Laccase; beta barrel, o 100.0 1.2E-82 4.1E-87 665.8 35.9 398 1-469 67-471 (495)
6 1v10_A Laccase; multicopper bl 100.0 3.4E-82 1.2E-86 669.2 35.2 414 1-487 87-508 (521)
7 1hfu_A Laccase 1; oxidoreducta 100.0 1.5E-81 5.1E-86 662.1 32.8 412 1-487 66-487 (503)
8 2q9o_A Laccase-1; multicopper 100.0 1.9E-80 6.4E-85 660.7 35.8 410 1-471 95-523 (559)
9 2uxt_A Protein SUFI, SUFI; oxi 100.0 4.2E-71 1.4E-75 574.5 27.4 347 1-471 77-443 (451)
10 2xu9_A Laccase; oxidoreductase 100.0 2.5E-70 8.6E-75 567.9 30.7 342 1-467 74-438 (439)
11 2wsd_A Spore coat protein A; o 100.0 4E-70 1.4E-74 576.3 31.2 372 1-470 107-511 (513)
12 3abg_A Bilirubin oxidase; clea 100.0 2.3E-69 7.9E-74 570.9 33.5 363 1-471 96-477 (534)
13 3aw5_A Multicopper oxidase; be 100.0 7.7E-70 2.6E-74 564.2 28.9 348 1-468 65-448 (448)
14 3gyr_A PHS, phenoxazinone synt 100.0 1E-68 3.5E-73 580.4 29.5 402 1-471 133-593 (612)
15 3zx1_A Oxidoreductase, putativ 100.0 1.3E-66 4.3E-71 541.3 31.9 355 1-468 109-480 (481)
16 2g23_A PHS, phenoxazinone synt 100.0 1.2E-66 4.1E-71 554.3 32.1 400 1-471 133-593 (612)
17 3od3_A Blue copper oxidase CUE 100.0 1.4E-65 4.7E-70 533.2 27.4 367 1-467 75-488 (488)
18 2r7e_A Coagulation factor VIII 100.0 1.5E-44 5.3E-49 393.9 14.5 189 1-208 102-315 (742)
19 2j5w_A Ceruloplasmin, ferroxid 100.0 1.4E-42 5E-47 393.1 30.2 204 1-229 122-358 (1065)
20 2dv6_A Nitrite reductase; elec 100.0 3.8E-41 1.3E-45 350.7 24.5 340 12-471 82-435 (447)
21 2j5w_A Ceruloplasmin, ferroxid 100.0 2.4E-41 8.2E-46 383.1 17.1 375 1-471 656-1060(1065)
22 3g5w_A Multicopper oxidase typ 100.0 4.9E-39 1.7E-43 318.7 20.0 212 1-229 61-278 (318)
23 2zwn_A Two-domain type laccase 100.0 3.9E-38 1.3E-42 315.5 23.4 211 1-228 62-278 (339)
24 3kw8_A Laccase, putative coppe 100.0 1.2E-35 4.2E-40 288.9 19.9 95 366-472 171-268 (276)
25 1kbv_A ANIA, major outer membr 100.0 1.5E-35 5E-40 295.3 17.4 196 10-229 103-309 (327)
26 3cg8_A Laccase; oxidoreductase 100.0 1.5E-33 5.1E-38 282.0 20.3 93 367-471 213-308 (343)
27 3gdc_A Multicopper oxidase; be 100.0 1.3E-32 4.5E-37 269.1 20.1 174 1-206 93-272 (288)
28 2zoo_A Probable nitrite reduct 100.0 3.4E-32 1.2E-36 282.6 17.3 199 10-230 93-300 (442)
29 1oe1_A Dissimilatory copper-co 100.0 7.5E-32 2.6E-36 270.0 17.2 210 1-229 89-320 (336)
30 1mzy_A Copper-containing nitri 100.0 3.2E-31 1.1E-35 265.1 18.6 211 1-229 88-320 (333)
31 3tas_A Small laccase, multi-co 100.0 5.7E-31 1.9E-35 260.5 17.0 181 1-227 69-271 (313)
32 1sdd_B Coagulation factor V; c 100.0 5.7E-31 2E-35 285.5 16.5 188 1-207 96-312 (647)
33 3t9w_A Small laccase, multi-co 100.0 8.6E-30 2.9E-34 250.1 16.9 182 1-228 85-288 (299)
34 2bw4_A Copper-containing nitri 100.0 3.1E-30 1.1E-34 258.7 13.9 210 1-229 95-326 (340)
35 1sdd_A Coagulation factor V; c 100.0 5.3E-31 1.8E-35 260.0 4.2 178 1-207 87-285 (306)
36 2dv6_A Nitrite reductase; elec 100.0 6.3E-28 2.1E-32 251.0 20.8 194 10-228 228-434 (447)
37 2r7e_B Coagulation factor VIII 100.0 2.3E-29 7.7E-34 274.9 6.5 186 1-206 226-440 (770)
38 3gdc_A Multicopper oxidase; be 100.0 9.4E-28 3.2E-32 234.7 15.9 235 106-469 54-288 (288)
39 2zwn_A Two-domain type laccase 99.9 3.9E-27 1.3E-31 235.7 17.6 246 106-470 23-278 (339)
40 3g5w_A Multicopper oxidase typ 99.9 1.6E-26 5.4E-31 228.9 14.7 248 107-471 23-278 (318)
41 2r7e_A Coagulation factor VIII 99.9 9.6E-28 3.3E-32 261.7 3.7 186 1-208 479-697 (742)
42 3t9w_A Small laccase, multi-co 99.9 1.7E-25 5.7E-30 219.6 17.7 219 126-471 57-289 (299)
43 3tas_A Small laccase, multi-co 99.9 1.8E-24 6E-29 213.9 20.1 220 126-472 41-274 (313)
44 1sdd_A Coagulation factor V; c 99.9 7.8E-24 2.7E-28 208.7 -0.7 239 109-470 52-301 (306)
45 1sdd_B Coagulation factor V; c 99.9 5.2E-21 1.8E-25 207.3 17.8 248 126-471 68-329 (647)
46 1kbv_A ANIA, major outer membr 99.8 1.1E-19 3.7E-24 180.7 19.7 249 107-471 59-309 (327)
47 2bw4_A Copper-containing nitri 99.8 2.7E-19 9.2E-24 179.1 22.5 93 363-471 231-326 (340)
48 1mzy_A Copper-containing nitri 99.8 1.6E-17 5.6E-22 165.6 24.7 93 364-471 226-320 (333)
49 2r7e_B Coagulation factor VIII 99.8 2.9E-20 1E-24 203.1 4.3 87 365-469 370-456 (770)
50 1oe1_A Dissimilatory copper-co 99.7 1.7E-16 5.8E-21 158.5 23.1 107 363-485 225-335 (336)
51 2zoo_A Probable nitrite reduct 99.7 6.6E-17 2.3E-21 167.5 18.8 250 106-471 48-299 (442)
52 2aan_A Auracyanin A; cupredoxi 99.2 6.2E-11 2.1E-15 102.5 8.5 94 364-468 36-139 (139)
53 3cvb_A Plastocyanin; cupredoxi 99.2 8.6E-11 2.9E-15 96.3 8.8 85 364-469 20-105 (105)
54 2uxt_A Protein SUFI, SUFI; oxi 98.9 1.1E-08 3.9E-13 105.6 14.4 161 11-207 230-426 (451)
55 2gim_A Plastocyanin; beta shee 98.9 4.6E-09 1.6E-13 86.0 8.7 83 364-468 21-105 (106)
56 1aoz_A Ascorbate oxidase; oxid 98.8 8.4E-08 2.9E-12 101.7 17.8 253 107-455 23-284 (552)
57 3cvb_A Plastocyanin; cupredoxi 98.8 2.9E-09 9.8E-14 87.1 3.7 45 17-62 61-105 (105)
58 1qhq_A Protein (auracyanin); e 98.8 1.5E-08 5.2E-13 87.4 8.3 98 364-468 34-139 (140)
59 2xu9_A Laccase; oxidoreductase 98.8 2E-07 7E-12 95.9 17.7 89 108-206 335-424 (439)
60 3pxl_A Laccase; 4-copper prote 98.7 4.4E-07 1.5E-11 94.6 19.7 235 107-453 23-263 (499)
61 1v10_A Laccase; multicopper bl 98.7 7.2E-07 2.5E-11 93.8 21.5 256 106-468 43-308 (521)
62 3t6v_A Laccase; beta barrel, o 98.7 2.2E-07 7.6E-12 96.8 16.6 237 107-453 24-266 (495)
63 3kw8_A Laccase, putative coppe 98.7 5.9E-08 2E-12 93.6 9.4 179 1-228 63-266 (276)
64 1pcs_A Plastocyanin; electron 98.6 1.1E-07 3.7E-12 76.6 8.9 78 364-468 20-98 (98)
65 2plt_A Plastocyanin; electron 98.6 1.4E-07 4.7E-12 75.9 8.6 80 364-468 19-98 (98)
66 1bxv_A Plastocyanin; copper pr 98.6 2.2E-07 7.6E-12 73.5 8.5 72 364-468 20-91 (91)
67 2ov0_A Amicyanin; beta-sandwic 98.5 5.4E-08 1.9E-12 79.5 4.9 53 1-61 53-105 (105)
68 1iby_A Nitrosocyanin; RED copp 98.5 4E-07 1.4E-11 75.1 9.8 74 364-469 39-112 (112)
69 1hfu_A Laccase 1; oxidoreducta 98.5 3.8E-06 1.3E-10 87.9 19.2 78 126-206 372-454 (503)
70 3cg8_A Laccase; oxidoreductase 98.5 2.3E-07 8E-12 92.2 8.8 179 1-228 104-307 (343)
71 1b3i_A PETE protein, protein ( 98.5 2.4E-07 8.1E-12 74.4 7.3 78 364-468 20-97 (97)
72 4hci_A Cupredoxin 1; structura 98.5 5.8E-07 2E-11 72.6 9.4 72 364-468 29-100 (100)
73 1byp_A Protein (plastocyanin); 98.4 3.8E-07 1.3E-11 73.5 7.2 82 364-468 18-99 (99)
74 2cal_A Rusticyanin; iron respi 98.4 1.8E-07 6.2E-12 81.8 3.6 39 21-61 113-154 (154)
75 1kdj_A Plastocyanin; electron 98.3 8.9E-07 3.1E-11 71.7 7.2 84 364-468 18-102 (102)
76 1iby_A Nitrosocyanin; RED copp 98.3 3.2E-07 1.1E-11 75.8 4.3 43 19-62 70-112 (112)
77 3zx1_A Oxidoreductase, putativ 98.3 2.3E-06 8E-11 88.6 11.5 89 108-206 372-465 (481)
78 3sqr_A Laccase; multicopper ox 98.3 7.5E-06 2.6E-10 86.6 15.5 85 364-471 99-189 (580)
79 3od3_A Blue copper oxidase CUE 98.3 1.4E-06 4.7E-11 90.4 9.4 93 108-207 379-475 (488)
80 2q9o_A Laccase-1; multicopper 98.3 1.7E-06 6E-11 91.6 10.4 86 363-471 67-159 (559)
81 2gim_A Plastocyanin; beta shee 98.2 7.6E-07 2.6E-11 72.6 4.0 43 19-62 64-106 (106)
82 1plc_A Plastocyanin; electron 98.2 3.8E-06 1.3E-10 67.5 7.1 82 364-468 18-99 (99)
83 1zpu_A Iron transport multicop 98.1 6.6E-06 2.3E-10 86.6 10.4 86 363-471 34-126 (534)
84 2cal_A Rusticyanin; iron respi 98.1 6.8E-06 2.3E-10 71.7 8.6 85 363-468 61-154 (154)
85 2g23_A PHS, phenoxazinone synt 98.1 7.7E-06 2.6E-10 87.1 10.7 91 107-207 459-576 (612)
86 1fwx_A Nitrous oxide reductase 98.1 1.3E-05 4.4E-10 84.3 10.8 78 363-470 513-593 (595)
87 3aw5_A Multicopper oxidase; be 98.1 6.9E-06 2.3E-10 84.6 8.4 87 363-472 38-129 (448)
88 2ov0_A Amicyanin; beta-sandwic 98.0 2.6E-05 9E-10 63.3 8.5 72 364-468 34-105 (105)
89 3abg_A Bilirubin oxidase; clea 97.9 2.7E-05 9.3E-10 81.9 8.9 88 362-472 68-160 (534)
90 2aan_A Auracyanin A; cupredoxi 97.8 1.2E-05 4E-10 69.0 4.7 39 22-61 101-139 (139)
91 1fwx_A Nitrous oxide reductase 97.8 9.8E-06 3.3E-10 85.2 4.5 45 19-64 548-594 (595)
92 3tu6_A Pseudoazurin (blue copp 97.8 3E-05 1E-09 65.1 5.8 40 21-64 59-98 (127)
93 3erx_A Pseudoazurin; copper pr 97.7 5.5E-05 1.9E-09 63.2 6.7 39 21-63 57-95 (123)
94 1b3i_A PETE protein, protein ( 97.7 1.7E-05 5.7E-10 63.4 2.5 38 20-61 60-97 (97)
95 1pcs_A Plastocyanin; electron 97.7 3.2E-05 1.1E-09 61.8 4.1 38 20-61 61-98 (98)
96 2wsd_A Spore coat protein A; o 97.6 0.00014 4.7E-09 76.2 9.8 90 108-207 385-495 (513)
97 2plt_A Plastocyanin; electron 97.6 3.7E-05 1.3E-09 61.4 3.8 38 20-61 61-98 (98)
98 3tu6_A Pseudoazurin (blue copp 97.6 0.00015 5.2E-09 60.8 7.3 75 364-471 24-98 (127)
99 1byp_A Protein (plastocyanin); 97.6 8.3E-05 2.9E-09 59.5 5.5 37 21-61 63-99 (99)
100 3ef4_A Pseudoazurin, blue copp 97.6 0.0001 3.5E-09 61.5 6.2 39 21-63 58-96 (124)
101 3erx_A Pseudoazurin; copper pr 97.6 0.00026 8.9E-09 59.0 8.5 74 364-470 22-95 (123)
102 1kdj_A Plastocyanin; electron 97.6 5E-05 1.7E-09 61.1 4.0 38 20-61 65-102 (102)
103 1bxv_A Plastocyanin; copper pr 97.5 5.6E-05 1.9E-09 59.3 4.1 38 20-61 54-91 (91)
104 3ef4_A Pseudoazurin, blue copp 97.5 0.00025 8.6E-09 59.1 8.0 74 364-470 23-96 (124)
105 1plc_A Plastocyanin; electron 97.5 9.8E-05 3.4E-09 59.1 4.9 37 21-61 63-99 (99)
106 1pmy_A Pseudoazurin; electron 97.4 0.00023 7.8E-09 59.4 6.1 39 22-64 58-96 (123)
107 4hci_A Cupredoxin 1; structura 97.4 0.00011 3.8E-09 58.9 4.0 39 21-61 62-100 (100)
108 1iuz_A Plastocyanin; electron 97.4 0.00076 2.6E-08 53.7 8.8 80 364-468 19-98 (98)
109 1qhq_A Protein (auracyanin); e 97.4 0.00013 4.6E-09 62.3 4.4 41 21-62 99-140 (140)
110 3c75_A Amicyanin; copper prote 97.4 0.00017 5.7E-09 61.1 4.9 39 17-61 94-132 (132)
111 1paz_A Pseudoazurin precursor; 97.3 0.0003 1E-08 58.7 6.2 38 22-63 58-95 (123)
112 1cuo_A Protein (azurin ISO-2); 97.3 0.0002 6.7E-09 60.3 4.4 42 21-62 86-129 (129)
113 1id2_A Amicyanin; beta barrel, 97.2 0.0011 3.7E-08 53.7 8.5 72 364-468 35-106 (106)
114 3ay2_A Lipid modified azurin p 97.2 0.00019 6.5E-09 63.0 4.1 42 21-62 125-167 (167)
115 3gyr_A PHS, phenoxazinone synt 97.2 0.0015 5E-08 69.9 11.7 90 108-207 460-576 (612)
116 3c75_A Amicyanin; copper prote 97.1 0.0016 5.6E-08 54.9 8.5 72 364-468 61-132 (132)
117 2ux6_A Pseudoazurin; type-1 co 97.1 0.00085 2.9E-08 55.8 6.3 37 21-63 57-93 (122)
118 1iuz_A Plastocyanin; electron 97.0 0.00044 1.5E-08 55.1 4.1 37 21-61 62-98 (98)
119 1paz_A Pseudoazurin precursor; 97.0 0.0028 9.4E-08 52.8 8.6 74 364-470 22-95 (123)
120 1pmy_A Pseudoazurin; electron 96.9 0.0022 7.5E-08 53.4 7.6 74 364-470 22-95 (123)
121 2iaa_C Azurin; quinoprotein, t 96.9 0.0009 3.1E-08 56.1 4.6 42 21-62 85-128 (128)
122 2ccw_A Azurin II, AZN-2; elect 96.8 0.0009 3.1E-08 56.2 4.5 42 21-62 86-129 (129)
123 1id2_A Amicyanin; beta barrel, 96.8 0.0011 3.9E-08 53.6 4.9 35 21-61 72-106 (106)
124 3ay2_A Lipid modified azurin p 96.8 0.0016 5.6E-08 57.0 5.9 97 364-468 59-166 (167)
125 3sbq_A Nitrous-oxide reductase 96.7 0.0072 2.5E-07 62.6 10.5 79 363-469 558-637 (638)
126 1nwp_A Azurin; electron transp 96.6 0.0015 5.2E-08 54.7 4.2 41 21-61 86-128 (128)
127 1cuo_A Protein (azurin ISO-2); 96.5 0.0043 1.5E-07 52.0 6.3 90 364-468 19-128 (129)
128 2ux6_A Pseudoazurin; type-1 co 96.2 0.013 4.5E-07 48.5 7.5 72 364-470 22-93 (122)
129 2cua_A Protein (CUA); CUA cent 96.1 0.027 9.1E-07 47.5 9.0 70 365-468 62-134 (135)
130 2ccw_A Azurin II, AZN-2; elect 96.0 0.013 4.5E-07 49.0 6.8 97 364-468 19-128 (129)
131 2iaa_C Azurin; quinoprotein, t 95.8 0.029 1E-06 46.8 8.1 43 425-468 82-127 (128)
132 1nwp_A Azurin; electron transp 95.4 0.058 2E-06 44.9 8.3 97 364-468 19-128 (128)
133 3sbq_A Nitrous-oxide reductase 95.3 0.014 4.7E-07 60.5 4.8 43 20-63 594-638 (638)
134 3fsa_A Azurin; copper, cupredo 94.8 0.021 7.1E-07 47.3 3.8 37 22-61 87-125 (125)
135 3s8f_B Cytochrome C oxidase su 93.8 0.31 1E-05 42.5 9.3 72 365-468 95-167 (168)
136 3fsa_A Azurin; copper, cupredo 93.5 0.31 1.1E-05 40.2 8.2 95 364-468 19-125 (125)
137 3isy_A Bsupi, intracellular pr 87.4 5.4 0.00019 32.4 10.1 71 136-207 21-102 (120)
138 3s8f_B Cytochrome C oxidase su 85.7 0.72 2.4E-05 40.1 4.3 41 21-62 126-168 (168)
139 2cua_A Protein (CUA); CUA cent 84.1 3.4 0.00012 34.4 7.7 58 128-206 61-118 (135)
140 2r39_A FIXG-related protein; s 64.2 15 0.0005 29.5 6.2 47 136-192 34-82 (118)
141 1cyx_A CYOA; electron transpor 62.3 24 0.00081 31.5 7.6 73 364-468 42-115 (205)
142 3hb3_B Cytochrome C oxidase su 49.9 51 0.0017 31.2 8.1 76 363-470 189-265 (298)
143 1cyx_A CYOA; electron transpor 46.0 71 0.0024 28.4 7.9 59 128-207 42-100 (205)
144 2wtp_A ORF131 protein, CZCE; m 40.9 11 0.00038 30.9 1.7 23 128-150 72-94 (131)
145 2gsm_B Cytochrome C oxidase su 38.3 94 0.0032 28.7 7.9 75 363-469 171-246 (262)
146 2p9r_A Alpha-2-M, alpha-2-macr 37.5 90 0.0031 23.8 6.7 71 130-206 12-84 (102)
147 1x9u_A Umecyanin; cupredoxin, 34.2 43 0.0015 26.8 4.2 33 438-470 73-106 (116)
148 1xwv_A DER F II; beta sheets, 31.4 28 0.00097 28.4 2.8 23 11-34 70-92 (129)
149 1v54_B Cytochrome C oxidase po 29.8 1.3E+02 0.0044 27.1 7.2 74 363-468 140-214 (227)
150 3idu_A Uncharacterized protein 27.0 2.5E+02 0.0085 22.6 9.9 67 130-206 28-96 (127)
151 1nep_A EPV20, BNPC2, epididyma 26.5 39 0.0013 27.5 2.8 25 11-35 71-95 (130)
152 2gsm_B Cytochrome C oxidase su 25.4 1.7E+02 0.006 26.8 7.4 59 128-207 172-230 (262)
153 2f1e_A Protein APAG; APAG prot 25.1 33 0.0011 28.1 2.0 20 12-32 67-86 (127)
154 1jer_A Cucumber stellacyanin; 25.0 92 0.0031 25.7 4.8 33 439-471 77-110 (138)
155 1fft_B Ubiquinol oxidase; elec 24.7 80 0.0027 30.1 5.0 73 364-468 152-225 (315)
156 1xq4_A Protein APAG; all beta 24.0 33 0.0011 28.5 1.8 20 12-32 71-90 (139)
157 3isy_A Bsupi, intracellular pr 22.9 65 0.0022 26.0 3.4 42 10-51 59-105 (120)
158 1xvs_A Protein APAG; MCSG APC2 22.7 33 0.0011 28.0 1.6 20 12-32 66-85 (126)
159 1ws8_A Mavicyanin; oxidized fo 22.7 93 0.0032 24.5 4.2 33 438-470 73-105 (109)
160 3hb3_B Cytochrome C oxidase su 22.5 2.6E+02 0.0088 26.3 8.0 60 127-207 189-248 (298)
161 3pu9_A Protein serine/threonin 21.3 1.9E+02 0.0065 25.8 6.8 30 138-169 109-138 (242)
162 3kmh_A D-lyxose isomerase; cup 21.0 1.8E+02 0.006 26.4 6.1 13 175-187 172-184 (246)
163 1tza_A APAG protein, SOR45; st 20.8 32 0.0011 28.4 1.1 20 12-32 66-85 (134)
164 3t91_A Stage II sporulation pr 20.4 1.6E+02 0.0055 26.1 6.1 30 138-169 106-135 (242)
No 1
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=100.00 E-value=7.4e-89 Score=725.86 Aligned_cols=452 Identities=30% Similarity=0.551 Sum_probs=350.1
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
||++|++++||||||++|||+|+||++|+|+|++ +++||||||||...|+ +||+|+|||+++.....++ .+|+|++|
T Consensus 62 HGl~~~~~~~~DGv~~vtq~~I~PG~s~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l 139 (552)
T 1aoz_A 62 HGILQRGTPWADGTASISQCAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPF-HYDGEINL 139 (552)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEEC-CSCEEEEEEECSTTTGGGTCEEEEEEECCTTCCCSS-CCSEEEEE
T ss_pred CCCccCCCcccCCCcccccCCcCCCCeEEEEEEC-CCCEEEEEEECchhHHhccCeeeEEEeCCcccCCCC-CCCccceE
Confidence 9999999999999999999999999999999998 8999999999999888 8999999999986544444 34789999
Q ss_pred EeeeccccChHHHHHHHhhcC-CCCCCCCeEEEcCcCCCCCCC-------------CCC-----ceeeEEEeCCCEEEEE
Q 040938 80 IFGEWWKADTEKIINQALQTG-AAPNISDAFTINGLPGPLYNC-------------SAK-----DTFKLKVKPGKTYLLR 140 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~g-~~~~~~d~~lvNG~~~~~~~~-------------~~~-----~~~~~~v~~G~~~rlR 140 (487)
+|+||++++...+........ .....++++||||+.. ++| +.. ..+.++|++|++||||
T Consensus 140 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~--~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~~RlR 217 (552)
T 1aoz_A 140 LLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQ--FDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIR 217 (552)
T ss_dssp EEEEECSSCHHHHHHHTTSSSCCCCCSCSEEEETTBCC--SSSBTTGGGCTTSCBCCCCSCSTTSCCCEEECTTCEEEEE
T ss_pred EeecccCCCHHHHHhhhhcccccCCCCCCeEEECCccc--cCcccCcccccccccccccCCCCCCceEEEEcCCCEEEEE
Confidence 999999998776654432211 1112468999999974 334 321 2348999999999999
Q ss_pred EEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEec-CCCCCcceEEEeccCCCCCCCCCCcce
Q 040938 141 MINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAK-HKSPNASFLIAARPYATGPASFDNTTT 219 (487)
Q Consensus 141 ~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~-~~~~~g~~~i~~~~~~~~~~~~~~~~~ 219 (487)
|||+|+.+.+.|+|+||+|+|||+||++++|+.++.|.|+|||||||+|+++ +.. |+|||++...... .+....
T Consensus 218 liNa~~~~~~~~~i~gh~~~vi~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~--g~y~i~~~~~~~~---~~~~~~ 292 (552)
T 1aoz_A 218 IASTTALAALNFAIGNHQLLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPS--ENYWVSVGTRARH---PNTPPG 292 (552)
T ss_dssp EEECCSSCEEEEEETTCCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCTT--CCEEEEEEEESSC---CCSCCE
T ss_pred EEcccccceEEEEEcCcEEEEEEECCcccCceEEeEEEEcCCcEEEEEEEcCCCCC--CCEEEEEEcccCC---CCCccE
Confidence 9999999999999999999999999999999999999999999999999994 444 8999999875421 234568
Q ss_pred EEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccC
Q 040938 220 AGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQG 299 (487)
Q Consensus 220 ~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~ 299 (487)
.|+|+|.+...... +.+.. |..+.+++......+ .++.+.... +...+..+++++.+.+.....
T Consensus 293 ~ail~y~~~~~~~~--p~~~~-p~~p~~~~~~~~~~~--~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~---------- 356 (552)
T 1aoz_A 293 LTLLNYLPNSVSKL--PTSPP-PQTPAWDDFDRSKNF--TYRITAAMG-SPKPPVKFNRRIFLLNTQNVI---------- 356 (552)
T ss_dssp EEEEEETTSCTTSC--CSSCC-CCCCCTTCHHHHHHH--HTTCCBCTT-CCCCCSSCSEEEEEEEEEEEE----------
T ss_pred EEEEEECCCCCCCC--CCCCC-CCCCccccccccccc--cccccccCC-CCCCCCCCcEEEEEEEeeccC----------
Confidence 89999987643111 11122 444555554433222 233333222 333556678888877654321
Q ss_pred CCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCC-ccccCCCCCCCCcccCCCceEEEecCCCEEEEEEe
Q 040938 300 PNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPP-FKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQ 378 (487)
Q Consensus 300 ~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~ 378 (487)
. ..+.|++||++|..|..|+|.+.+.+++ |.|..+++..++ ..|+.+. ...+...+.++.++.++.|++|+|+|+
T Consensus 357 -~-~~~~w~iNg~s~~~p~~P~L~~~~~~~~-g~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~g~~v~ivi~ 432 (552)
T 1aoz_A 357 -N-GYVKWAINDVSLALPPTPYLGAMKYNLL-HAFDQNPPPEVFPEDYDIDT-PPTNEKTRIGNGVYQFKIGEVVDVILQ 432 (552)
T ss_dssp -T-TEEEEEETTEEECCCSSCHHHHHHTTCT-TSSCCSCCCSCCCTTCCTTS-CCCCTTCEEECCCEEECTTCEEEEEEE
T ss_pred -C-CeEEEEECCCccCCCCCCHHHHHhhcCc-cccccCCCcccccccccccc-ccccccccccceEEEecCCCEEEEEEe
Confidence 1 2457999999999998899888877665 666655544322 1233321 111223456678899999999999999
Q ss_pred eCCCCC---CCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchh
Q 040938 379 DTSIIG---AESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEV 455 (487)
Q Consensus 379 n~~~~~---~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~ 455 (487)
|.+... ...||||||||+||||+++.|.|++ .....+|+.+|+|||||.|++++|++|||++||||.|+|||||++
T Consensus 433 N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~-~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~aDNPG~W~~HCHi~~ 511 (552)
T 1aoz_A 433 NANMMKENLSETHPWHLHGHDFWVLGYGDGKFSA-EEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEP 511 (552)
T ss_dssp ECCCSSTTCCCCEEEEETTCCEEEEEEEESSCCG-GGGGGSCCSSCCEESEEEECTTEEEEEEEECCSCEEEEEEESSHH
T ss_pred CCcccccccCCCCCEEEcCCceEEEecccCccCc-ccccccccCCCCccCeEEeCCCceEEEEEEcCCCeEEEEEeeehh
Confidence 976322 4679999999999999999899887 445678999999999999999999999999999999999999999
Q ss_pred hhhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 040938 456 HTSWGLKMAWIVNDGKGPKQKLPPPPSDLPKC 487 (487)
Q Consensus 456 H~~~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 487 (487)
|++.|||++|.|.+ ++++++|+++++|
T Consensus 512 H~~~GM~~~~~~~~-----~~~~~~P~~~~~C 538 (552)
T 1aoz_A 512 HLHMGMGVVFAEGV-----EKVGRIPTKALAC 538 (552)
T ss_dssp HHHTTCEEEEEECG-----GGCCCCCHHHHSS
T ss_pred HhhCCCeEEEEeCc-----hhhccCCcchhhh
Confidence 99999999998743 2577789999999
No 2
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=100.00 E-value=9.3e-85 Score=689.45 Aligned_cols=404 Identities=31% Similarity=0.479 Sum_probs=316.7
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcce-e
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEV-P 78 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~-~ 78 (487)
|||+|++++||||+|+||||||+||++|+|+|++ .|+||||||||...|+ +||+|+|||+++.+. .+|.|. +
T Consensus 126 HGl~~~~t~~~DGvp~vTq~pI~PG~sftY~f~~-~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~~~-----~yD~d~~~ 199 (580)
T 3sqr_A 126 HGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQV-TQYGTTWYHSHFSLQYGDGLFGPLIINGPATA-----DYDEDVGV 199 (580)
T ss_dssp TTCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEEC-CCCEEEEEEECSTTGGGGTCEEEEEEECCCSS-----CCSEEEEE
T ss_pred cccccCCCccccCCCccccCCCCCCCeEEEEEEC-CCCcceEEeecccccccCcCEEEEEeeCcccC-----CCCccceE
Confidence 9999999999999999999999999999999998 7999999999999998 799999999987653 358887 9
Q ss_pred EEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCC---------CceeeEEEeCCCEEEEEEEecCCCce
Q 040938 79 MIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSA---------KDTFKLKVKPGKTYLLRMINAALNDE 149 (487)
Q Consensus 79 l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~---------~~~~~~~v~~G~~~rlR~iN~~~~~~ 149 (487)
|+|+||+++...++....... .+..++++||||+.. ++|+. ...+.++|++|++|||||||+|..+.
T Consensus 200 l~l~Dw~~~~~~~~~~~~~~~--~~~~~d~~liNG~~~--~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~ 275 (580)
T 3sqr_A 200 IFLQDWAHESVFEIWDTARLG--APPALENTLMNGTNT--FDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSH 275 (580)
T ss_dssp EEEEEECSSCHHHHHHHHTTS--CCCCBSEEEETTBCC--CCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCC
T ss_pred EEEEEEecCCHHHHHHHHhcc--CCCCCceEEECCccc--CCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCce
Confidence 999999999888776654432 245789999999964 55542 24689999999999999999999999
Q ss_pred EEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCC
Q 040938 150 LFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPN 229 (487)
Q Consensus 150 ~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 229 (487)
+.|+|+||+|+|||+||.+++|++++.|.|+|||||||+|+++++. |+||||+.....|..........|||+|.+++
T Consensus 276 ~~~~i~gh~~~VIa~DG~~v~P~~~~~l~i~pGqRydVlv~a~~~~--g~Y~i~a~~~~~~~~~~~~~~~~aiL~Y~~~~ 353 (580)
T 3sqr_A 276 FEFAIDNHTLTVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANAAA--DNYWIRGNWGTTCSTNNEAANATGILRYDSSS 353 (580)
T ss_dssp EEEEETTCCEEEEEETTEEEEEEEESSEEECTTCEEEEEEECCSCS--SEEEEECCCCTTTSCBTTGGGCEEEEESSTTC
T ss_pred eeEEeCCceEEEEEeCCccCCceEeeEEEEccceEEEEEEEeCCCC--CeEEEEEecccccCccCCCCceEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999876 89999998765543222334689999997653
Q ss_pred CCCCCCCCCCCCCCCCCCCCch-hhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeee
Q 040938 230 NANKNKKLPLLKPALPKFNDTN-FAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAAS 308 (487)
Q Consensus 230 ~~~~~~~~~~~~p~~p~~~~~~-~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (487)
.. .|.. +.+.... ...+...+|+++. +..+|...+.++.+.++ .+..+.|+
T Consensus 354 ~~-----~P~~----~~~~~~~~~~~~~~~~L~P~~----~~~~~~~~~~~~~l~~~---------------~~~~~~w~ 405 (580)
T 3sqr_A 354 IA-----NPTS----VGTTPRGTCEDEPVASLVPHL----ALDVGGYSLVDEQVSSA---------------FTNYFTWT 405 (580)
T ss_dssp CC-----CCCC----CCCCCCCCSCCSCGGGCCBSS----CCBCCSEEEEEEEEEEE---------------ESSSEEEE
T ss_pred CC-----CCCC----CCCCccchhhcccccccccCC----CCCCCCccceEEEEEec---------------cCCceeEE
Confidence 21 1111 1111110 0001012333321 22233344545444432 12456899
Q ss_pred ecceeccC-CChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEec----CCCEEEEEEeeCCCC
Q 040938 309 INNVSFAQ-PNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALP----FNASVEVVMQDTSII 383 (487)
Q Consensus 309 iN~~~~~~-p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~----~g~~v~~~l~n~~~~ 383 (487)
+||.+|.. ++.|.|.+.+.+ . .+++ ....++.++ .|++|+|+|+|.+.
T Consensus 406 iN~~s~~~~~~~P~L~~~~~g----~--~~~~--------------------~~~~~~~~~~~~~~~~~VeiVi~n~~~- 458 (580)
T 3sqr_A 406 INSSSLLLDWSSPTTLKIFNN----E--TIFP--------------------TEYNVVALEQTNANEEWVVYVIEDLTG- 458 (580)
T ss_dssp ETTBCCCCCTTSCHHHHHHTT----C--CCCC--------------------GGGCEEEECC----CCEEEEEEEECSS-
T ss_pred ECCEecccCCCCCchhhhhcC----C--ccCC--------------------CCcceeecccccCCCcEEEEEEeCCCc-
Confidence 99999975 466766654432 1 1221 123345554 69999999999752
Q ss_pred CCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceE
Q 040938 384 GAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKM 463 (487)
Q Consensus 384 ~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~ 463 (487)
..+.||||||||+|+||++|.|.|++...+..+|+.+|++|||+.|++++|++|||++||||.|+|||||++|++.||++
T Consensus 459 ~~~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~adNPG~W~~HCHi~~H~~~Gm~~ 538 (580)
T 3sqr_A 459 FGIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAM 538 (580)
T ss_dssp SCCCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESCSCEEEEEEECSHHHHHTTCEE
T ss_pred cccceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcCCCeeeEEEECcHHHhhCCCcE
Confidence 14799999999999999999999998777778999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCC
Q 040938 464 AWIVNDGK 471 (487)
Q Consensus 464 ~~~V~~~~ 471 (487)
+|.+.+.+
T Consensus 539 ~~~e~~~~ 546 (580)
T 3sqr_A 539 QFVESQSS 546 (580)
T ss_dssp EEEESGGG
T ss_pred EEEECHHH
Confidence 99875443
No 3
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-83 Score=675.32 Aligned_cols=403 Identities=26% Similarity=0.421 Sum_probs=309.2
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcceeE
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVPM 79 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l 79 (487)
|||+|++++||||||+||||+|+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++.+ |+ .+|+|++|
T Consensus 62 HG~~~~~~~~~DG~~~vtq~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~---p~-~~d~e~~l 137 (534)
T 1zpu_A 62 HGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSF---PY-DYDEELSL 137 (534)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTTC---CS-CCSEEEEE
T ss_pred CCcccCCCCcccCCCccccCCcCCCCeEEEEEEeCccceeEEEEEcCcccccCcceeeEEeCCCCC---CC-CCcceEEE
Confidence 999999999999999999999999999999999866999999999999998 89999999999864 22 56899999
Q ss_pred EeeeccccChHHHHHHHhhc---CCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcC
Q 040938 80 IFGEWWKADTEKIINQALQT---GAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIAN 156 (487)
Q Consensus 80 ~l~d~~~~~~~~~~~~~~~~---g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~ 156 (487)
+|+||+++...++....... ......++++||||+.. +.++|++|++|||||||+|+.+.+.|+|+|
T Consensus 138 ~l~Dw~~~~~~~~~~~~~~~~~~~g~~~~~d~~liNG~~~----------~~~~v~~g~~~RlRliNa~~~~~~~~~i~g 207 (534)
T 1zpu_A 138 SLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMN----------LTWEVQPDTTYLLRIVNVGGFVSQYFWIED 207 (534)
T ss_dssp EEEEECSSCHHHHHHHHSSTTCTTCCCCCCSEEEETTBSS----------CEEECCSSCEEEEEEEECCSSCCEEEEETT
T ss_pred EeeccccCCHHHHHHHHhccccCCCCCCCCceEEECCCCc----------eEEEEECCCEEEEEEEeccCCceEEEEEcC
Confidence 99999999888776554321 12335789999999963 789999999999999999999999999999
Q ss_pred ceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC---CCCCcceEEEEEEecCCCCCC
Q 040938 157 HTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA---SFDNTTTAGVLEYEQPNNANK 233 (487)
Q Consensus 157 h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~---~~~~~~~~ail~y~~~~~~~~ 233 (487)
|+|+|||+||++++|+.++.|.|+|||||||+|++++.. +++|||++.....+.. ........++|+|.++.....
T Consensus 208 h~~~vi~~DG~~~~P~~~~~l~l~~gqR~dvlv~~~~~~-~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~ 286 (534)
T 1zpu_A 208 HEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDT-DKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPT 286 (534)
T ss_dssp BCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCS-SCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCBCC
T ss_pred CeeEEEeccCcCccccEeceEEECccceEEEEEEcCCCC-CCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCCCC
Confidence 999999999999999999999999999999999998653 2789999875432211 122346789999977532111
Q ss_pred CCCCCCCCCCCCC-CCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecce
Q 040938 234 NKKLPLLKPALPK-FNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNV 312 (487)
Q Consensus 234 ~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~ 312 (487)
.+.. ..++. ..+ ..++++.. ...+..+++++.+.+.+... .++ ...|++||+
T Consensus 287 ---~~~~-~~~~~~~~~--------~~l~p~~~----~~~~~~~~~~~~l~~~~~~~----------~~~-~~~~~iNg~ 339 (534)
T 1zpu_A 287 ---QNYV-DSIDNFLDD--------FYLQPYEK----EAIYGEPDHVITVDVVMDNL----------KNG-VNYAFFNNI 339 (534)
T ss_dssp ---CCCC-SCSSCSCCG--------GGCCBSSC----CCCCCSCSEEEEEEEEEEEC----------TTS-CEEEEETTB
T ss_pred ---CCcc-ccccccccc--------ccceeCCC----CCCCCCCCeEEEEEEEeecc----------CCc-eeEEEECCC
Confidence 0001 11111 111 12333221 12334567888777654321 022 235899999
Q ss_pred eccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeee
Q 040938 313 SFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHL 392 (487)
Q Consensus 313 ~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~Hl 392 (487)
+|..|..|+|.+.+.. +.+.. . +.. ...++.++.++.|++|+|+|+|.+ .+.|||||
T Consensus 340 s~~~~~~P~L~~~~~~---~~~~~----~-~~~------------~~~~~~~~~~~~g~~v~ivi~N~~---~~~HP~HL 396 (534)
T 1zpu_A 340 TYTAPKVPTLMTVLSS---GDQAN----N-SEI------------YGSNTHTFILEKDEIVEIVLNNQD---TGTHPFHL 396 (534)
T ss_dssp CCCCCSSCHHHHHTTS---GGGTT----C-GGG------------GCSSSCEEEECTTCEEEEEEEECS---SSCEEEEE
T ss_pred cccCCCCCceeeeccc---CcccC----C-Ccc------------cCCCceEEEeCCCCEEEEEEeCCC---CCCCCeEe
Confidence 9999888766554321 22111 0 111 223467889999999999999975 58999999
Q ss_pred cCCceEEEEecCC----------CCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccce
Q 040938 393 HGFNFFVVGQGFG----------NFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLK 462 (487)
Q Consensus 393 Hg~~f~Vl~~g~g----------~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~ 462 (487)
|||+||||+++.+ .|++.. .. ....+|+|||||.|++++|++|||++||||.|+|||||++|++.|||
T Consensus 397 HGh~F~Vl~~~~~~~~~~~G~p~~~~~~~-~~-~~~~~p~~RDTv~V~pgg~v~IrF~aDNPG~W~~HCHi~~H~~~GM~ 474 (534)
T 1zpu_A 397 HGHAFQTIQRDRTYDDALGEVPHSFDPDN-HP-AFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWHLLQGLG 474 (534)
T ss_dssp TTCCEEEEEECCCCCGGGTCCCCCCBTTB-CC-CCCSSCEEESEEEECTTCEEEEEEECCSCEEEEEEECCHHHHHTTCE
T ss_pred cCCceEEEeecCCccccccCcccccCccc-cc-cccCCCCeeeEEEeCCCCEEEEEEEeCCCeeEEEEeCchhHhhcCCe
Confidence 9999999999864 344321 11 22468999999999999999999999999999999999999999999
Q ss_pred EEEEEeCC
Q 040938 463 MAWIVNDG 470 (487)
Q Consensus 463 ~~~~V~~~ 470 (487)
++|.|.+.
T Consensus 475 ~~~~~~~~ 482 (534)
T 1zpu_A 475 LVLVEDPF 482 (534)
T ss_dssp EEEEECHH
T ss_pred EEEEECcc
Confidence 99988644
No 4
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=100.00 E-value=7.7e-83 Score=667.27 Aligned_cols=399 Identities=28% Similarity=0.502 Sum_probs=303.9
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCC-CCCCCCCccee
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHAS-YPFPQPFKEVP 78 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~-~~~~~~d~e~~ 78 (487)
|||+|++++|||||+++|||+|+||++|+|+|++++++||||||||...|+ +||+|+|||+++.+.. .+++..++|++
T Consensus 66 HGl~~~~~~~~DGv~~vtq~pI~PG~s~tY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~~~~ 145 (499)
T 3pxl_A 66 HGFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDTV 145 (499)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGE
T ss_pred CCcccCCCccccCCCccccCCCCCCCeEEEEEEcCCCCceeeeeccchhHHhccceeEEEEcCCcccccccCCCCCceEE
Confidence 999999999999999999999999999999999878999999999999998 8999999999876421 12222246789
Q ss_pred EEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCce
Q 040938 79 MIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHT 158 (487)
Q Consensus 79 l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~ 158 (487)
|+|+||+++.... .+..+..+|++||||+.. +..|.....+.++|++|++|||||||+|+.+.+.|+|+||+
T Consensus 146 l~l~Dw~~~~~~~-------~~~~p~~~d~~liNG~~~-~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~ 217 (499)
T 3pxl_A 146 ITLADWYHTAAKL-------GPRFPGGADATLINGKGR-APSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHN 217 (499)
T ss_dssp EEEEEECSSCTTT-------SCSSCSSCSEEEETTBCC-CTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBC
T ss_pred EEEEcccCCcccc-------ccCCCCCCcEEEECCCCc-CCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCe
Confidence 9999999976432 233445789999999953 33333446789999999999999999999999999999999
Q ss_pred EEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCC
Q 040938 159 LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLP 238 (487)
Q Consensus 159 ~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~ 238 (487)
|+|||+||.+++|+.++.|.|+|||||||+|+++++. |+|||++.+...+.. +......|+|+|.+++.. .+
T Consensus 218 ~~via~DG~~~~P~~~~~l~i~pGqR~dvlv~~~~~~--g~y~i~a~~~~~~~~-~~~~~~~ail~Y~~~~~~-----~p 289 (499)
T 3pxl_A 218 LTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQAV--DNYWIRANPNFGNVG-FDGGINSAILRYDGAPAV-----EP 289 (499)
T ss_dssp EEEEEETTEEEEEEEESBEEECTTCEEEEEEECCSCS--SEEEEEEEESSSSCS-CGGGTTEEEEEETTSCSS-----CC
T ss_pred EEEEEECCcccCceEeeeEEECCCcEEEEEEECCCCC--ceEEEEEecccCccc-cCCCceEEEEEeCCCCCC-----CC
Confidence 9999999999999999999999999999999999876 899999986543321 223345799999776321 11
Q ss_pred CCCCCCCCCCCchhhhhhhhhhhccccCCCCC-CCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCC
Q 040938 239 LLKPALPKFNDTNFAMQFSKKIRSLATAKFPA-KVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQP 317 (487)
Q Consensus 239 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~-~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p 317 (487)
.. +..+..... ...+|+++.....|. ..+..+|+++.+.+.+ ++. .|+|||++|..|
T Consensus 290 ~~-~~~~~~~~~-----~~~~L~p~~~~~~p~~~~~~~~d~~~~l~~~~--------------~~~--~w~iNg~s~~~~ 347 (499)
T 3pxl_A 290 TT-NQTTSVKPL-----NEVDLHPLVSTPVPGAPSSGGVDKAINMAFNF--------------NGS--NFFINGASFVPP 347 (499)
T ss_dssp CC-CCCCCSSBC-----CGGGCCBSSCCCCSSCSSTTCSSEEEECCEEE--------------CSS--CEEETTBCCCCC
T ss_pred CC-CCCCCCccc-----ccccccccccccCCCcccCCCCcEEEEEEEEe--------------cCc--EEEEcCEecCCC
Confidence 11 110110000 112345443322221 1234567777665443 112 589999999988
Q ss_pred ChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCce
Q 040938 318 NIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNF 397 (487)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f 397 (487)
+.|+|.+.+.+ .+.. .+ ......++.++.|++|+|+|+|.+....+.||||||||+|
T Consensus 348 ~~P~L~~~~~g----~~~~--~~-----------------~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh~F 404 (499)
T 3pxl_A 348 TVPVLLQILSG----AQTA--QD-----------------LLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTF 404 (499)
T ss_dssp SSCHHHHHHTT----CCST--TT-----------------SSSTTSEEEECTTCEEEEEEECCTTSCSCSCEEEETTCCE
T ss_pred CCchhhhhhcC----Cccc--cc-----------------cCCCceeEEecCCCEEEEEEecCcccCCCCccceecCCcE
Confidence 88876654432 1110 00 1123468899999999999995322346889999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCccceEEecC---CcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 398 FVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPS---GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 398 ~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~---~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
+||+.+. ...+|+.+|+||||+.|++ |+|++|||++||||.|+|||||++|++.||+++|.+.
T Consensus 405 ~Vl~~~g--------~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~adnPG~W~~HCHi~~H~~~Gm~~~~~e~ 470 (499)
T 3pxl_A 405 AVVRSAG--------STVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAED 470 (499)
T ss_dssp EEEECTT--------CCCCCSSSCCEESEEECCCGGGTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEES
T ss_pred EEEeccC--------CcccccCCCCccceEEcCCcCCCcEEEEEEEcCCCceEEEEeCChhHhhCCCcEEEEEC
Confidence 9998642 2367889999999999997 9999999999999999999999999999999999654
No 5
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=100.00 E-value=1.2e-82 Score=665.82 Aligned_cols=398 Identities=27% Similarity=0.506 Sum_probs=302.4
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCC-CCCCCCCccee
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHAS-YPFPQPFKEVP 78 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~-~~~~~~d~e~~ 78 (487)
|||+|++++||||||++|||||+||++|+|+|++++++||||||||...|+ +||+|+|||+++.+.. .+++..++|++
T Consensus 67 HGl~~~~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~e~~ 146 (495)
T 3t6v_A 67 HGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTI 146 (495)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGE
T ss_pred CCcccCCCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeeccchhHHhcCceEEEEEcCccccccccCCCCCceeE
Confidence 999999999999999999999999999999999878999999999999998 8999999999876521 12222256789
Q ss_pred EEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCC--CceeeEEEeCCCEEEEEEEecCCCceEEEEEcC
Q 040938 79 MIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSA--KDTFKLKVKPGKTYLLRMINAALNDELFFSIAN 156 (487)
Q Consensus 79 l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~--~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~ 156 (487)
|+|+||+++....+ .+..+..+|++||||+.. +.|.. ...+.++|++|++|||||||+|+.+.+.|+|+|
T Consensus 147 l~l~Dw~~~~~~~~------~~~~p~~~d~~liNG~g~--~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~g 218 (495)
T 3t6v_A 147 ITLADWYHVLAKEM------GAGGAITADSTLIDGLGR--THVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDG 218 (495)
T ss_dssp EEEEEECSSCGGGS------CSSSCCCCSEEEETTBCC--BSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETT
T ss_pred EEEecccCCchhhh------ccCCCCCCcEEEECCcCc--CCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECC
Confidence 99999999865432 233445789999999953 33432 356899999999999999999999999999999
Q ss_pred ceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCC
Q 040938 157 HTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKK 236 (487)
Q Consensus 157 h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 236 (487)
|+|+|||+||.+++|+.++.|.|+|||||||+|+++++. |+|||++.+...+.. +.+....|+|+|.+++.. .
T Consensus 219 h~~~via~DG~~~~P~~~~~l~i~pGqR~dvlv~~~~~~--g~y~i~a~~~~~~~~-~~~~~~~ail~Y~~~~~~-~--- 291 (495)
T 3t6v_A 219 HDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPV--GNYWIRANPNSGGEG-FDGGINSAILRYDGATTA-D--- 291 (495)
T ss_dssp CCEEEEEETTEEEEEEEESBEEECTTCEEEEEEECCSCS--SEEEEEEEESSSSCS-CGGGTTEEEEEETTSCSS-C---
T ss_pred CeEEEEEeCCcccCCEEeeeEEEcCceEEEEEEECCCCC--ceEEEEEecccCccc-cCCCceEEEEEECCCCCC-C---
Confidence 999999999999999999999999999999999999876 899999986543321 223345799999775321 1
Q ss_pred CCCCCCCCC-CCCCchhhhhhhhhhhccccCCCCC-CCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceec
Q 040938 237 LPLLKPALP-KFNDTNFAMQFSKKIRSLATAKFPA-KVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSF 314 (487)
Q Consensus 237 ~~~~~p~~p-~~~~~~~~~~~~~~~~~~~~~~~p~-~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~ 314 (487)
+.. +..+ ..... ....|+++.....|. ..+..+|+++.+.+++ ++. .|++||++|
T Consensus 292 -p~~-~~~~~~~~~~-----~~~~L~p~~~~~~p~~~~~~~~d~~~~l~~~~--------------~~~--~w~iNg~s~ 348 (495)
T 3t6v_A 292 -PVT-VASTVHTKCL-----IETDLHPLSRNGVPGNPHQGGADCNLNLSLGF--------------ACG--NFVINGVSF 348 (495)
T ss_dssp -CCC-CCCSSCSSBC-----CGGGCCBSSCCCCSSCSSTTCSSEEEECCEEE--------------ETT--EEEETTBCC
T ss_pred -CCC-CCCCCCcccc-----ccccccccccccCCCccCCCCCcEEEEEEEEe--------------cCc--EEEEcCEec
Confidence 111 0000 00000 012344443222221 1234467776655433 111 689999999
Q ss_pred cCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecC
Q 040938 315 AQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHG 394 (487)
Q Consensus 315 ~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg 394 (487)
..|+.|+|.+...+ .+... + ......++.++.|++|+|+|+|.. ..+.|||||||
T Consensus 349 ~~~~~P~L~~~~~g----~~~~~--~-----------------~~~~~~v~~~~~g~~V~ivl~~n~--~~~~HP~HLHG 403 (495)
T 3t6v_A 349 TPPTVPVLLQICSG----ANTAA--D-----------------LLPSGSVISLPSNSTIEIALPAGA--AGGPHPFHLHG 403 (495)
T ss_dssp CCCSSCHHHHHHTT----CCSST--T-----------------SSSTTSEEEECTTCEEEEEEECCS--SSCCCEEEETT
T ss_pred CCCCCcchhhhhcC----CcCcc--c-----------------ccCCcceEEecCCCEEEEEEccCC--CCCCcceeecC
Confidence 98888766654322 11100 0 112346889999999999998422 35899999999
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecC-CcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeC
Q 040938 395 FNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPS-GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 395 ~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~-~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~ 469 (487)
|+|+||+.+. ...+|+.+|+||||+.|++ |+|++|||++||||.|+|||||++|++.||+++|.+.+
T Consensus 404 h~F~vl~~~g--------~~~~n~~~P~~rDtv~v~~~g~~~~irf~adnPG~W~~HCHi~~H~~~Gm~~~~~e~~ 471 (495)
T 3t6v_A 404 HDFAVSESAS--------NSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDI 471 (495)
T ss_dssp CCEEEEECTT--------CCCCCSSSCCEESEEECCSTTCEEEEEEECCSCEEEEEEESCHHHHHTTCEEEEEETH
T ss_pred CcEEEEecCC--------CCCcccCCCCCccEEEcCCCCcEEEEEEEcCCCeeEEEEecchhHhhcCCeEEEEECh
Confidence 9999998642 2367889999999999997 89999999999999999999999999999999997543
No 6
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=100.00 E-value=3.4e-82 Score=669.17 Aligned_cols=414 Identities=28% Similarity=0.481 Sum_probs=307.6
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCC-CCCCCCCCccee
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHA-SYPFPQPFKEVP 78 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~-~~~~~~~d~e~~ 78 (487)
||++|++++||||||++|||+|+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++.+. ..+++..++|++
T Consensus 87 HGl~~~~~~~~DGv~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~ 166 (521)
T 1v10_A 87 HGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTV 166 (521)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTEEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGE
T ss_pred CCeeccCCCccCCCcceeeCCcCCCCeEEEEEecCCCCccEEEEeccCCchhcCceEEEEEcCCcccccccCCCCCceeE
Confidence 999999999999999999999999999999999778999999999999998 799999999987642 112322246999
Q ss_pred EEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCC--CCceeeEEEeCCCEEEEEEEecCCCceEEEEEcC
Q 040938 79 MIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCS--AKDTFKLKVKPGKTYLLRMINAALNDELFFSIAN 156 (487)
Q Consensus 79 l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~--~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~ 156 (487)
|+|+||+++...++... .+...+.+|++||||+.. +.|+ ....+.++|++|++|||||||+|+.+.+.|+|+|
T Consensus 167 l~l~D~~~~~~~~~~~~---~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~g 241 (521)
T 1v10_A 167 ITIADWYHSLSTVLFPN---PNKAPPAPDTTLINGLGR--NSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDG 241 (521)
T ss_dssp EEEEEECSSCCC----------CCCSCCSEEEETTBCC--CSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETT
T ss_pred EEEcccccCCHHHHhhc---cCCCCCCCCEEEECCccc--CCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECC
Confidence 99999999877655321 222235689999999974 5564 2345899999999999999999999999999999
Q ss_pred ceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCC
Q 040938 157 HTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKK 236 (487)
Q Consensus 157 h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 236 (487)
|+|+|||+||++++|+.+++|.|+|||||||+|++++++ |+|||++.....+.. +......++|+|.+.+...
T Consensus 242 h~~~vi~~DG~~~~p~~~~~l~l~pgqR~dvlv~~~~~~--g~y~i~~~~~~~~~~-~~~~~~~ail~y~~~~~~~---- 314 (521)
T 1v10_A 242 HRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQAV--GNYWIRANPSNGRNG-FTGGINSAIFRYQGAAVAE---- 314 (521)
T ss_dssp CCEEEEEETTEEEEEEEESBEEECTTCEEEEEEECCSCS--SEEEEEEEESSSSCS-CGGGTTEEEEEETTCCSCC----
T ss_pred CeEEEEecCCccccceeeeeEEEcccceEEEEEEcCCCC--Cceeeeecccccccc-CCCCceeEEEEECCCCCCC----
Confidence 999999999999999999999999999999999998876 899999986532221 2222346999998764210
Q ss_pred CCCCCCCCCCCCCchhhhhhhhhhhccccCCCCC-CCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceecc
Q 040938 237 LPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPA-KVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFA 315 (487)
Q Consensus 237 ~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~-~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~ 315 (487)
+.. +.. ...... ..+++++.....|. ..+...+.++.+++.+ ++..+.|+|||++|.
T Consensus 315 -p~~-~~~-~~~~~~-----~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~~--------------~~~~~~~~iNg~~~~ 372 (521)
T 1v10_A 315 -PTT-SQN-SGTALN-----EANLIPLINPGAPGNPVPGGADINLNLRIGR--------------NATTADFTINGAPFI 372 (521)
T ss_dssp -CCC-CCC-CSCBCC-----GGGCCBSSCCCCSSCSSTTCSSEEEECCEEC--------------CSSSSCCEESSCCCC
T ss_pred -CCC-CCC-cccccc-----hhhcccCCcccCCCcccCCcceEEEEEEEec--------------CCceeEEEECCCccc
Confidence 111 100 000000 12334332222221 1122334444333221 222246899999999
Q ss_pred CCChhhhhhhhcCcccCccc-CCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecC
Q 040938 316 QPNIALLQAHFFNKSKGVYT-TDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHG 394 (487)
Q Consensus 316 ~p~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg 394 (487)
.+..|+|.+.+.+ .+. .+ .+.+..++.++.|++|+|+|+| . +.|||||||
T Consensus 373 ~~~~P~l~~~~~g----~~~~~~--------------------~~~~~~~~~v~~g~~vei~l~N-~----~~HP~HLHG 423 (521)
T 1v10_A 373 PPTVPVLLQILSG----VTNPND--------------------LLPGGAVISLPANQVIEISIPG-G----GNHPFHLHG 423 (521)
T ss_dssp CCSSCHHHHHHHT----CCCGGG--------------------SSSTTTEEEECTTCEEEEEEEC-C----BSCEEEESS
T ss_pred CCCCchhhhhhcC----Cccccc--------------------CCCCceEEEecCCCEEEEEEcC-C----CCCCEEEcc
Confidence 8877766654432 110 01 1234678899999999999999 3 689999999
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCccceEEe-cCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCCCC
Q 040938 395 FNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGV-PSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGKGP 473 (487)
Q Consensus 395 ~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v-~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~~~ 473 (487)
|+||||+++.+. .+|+.+|+|||||.| ++++|++|||++||||.|+|||||++|++.|||++|.|.+.+.
T Consensus 424 h~F~Vl~~~~~~--------~~n~~~p~~rDTV~V~p~gg~v~Irf~aDNPG~W~~HCHi~~H~~~GM~~~~~v~~~~~- 494 (521)
T 1v10_A 424 HNFDVVRTPGSS--------VYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNI- 494 (521)
T ss_dssp CCEEEEECTTCS--------CCCCSSCCEESEEECCBSSCEEEEEEECCSCEEEEEEESCHHHHTTTCEEEEEESGGGH-
T ss_pred ceEEEEecCCCC--------ccccCCCCeeeeEEeCCCCcEEEEEEEeCCCeeEEEeeChHHHHhCCCeEEEEECCcch-
Confidence 999999997542 467889999999999 8999999999999999999999999999999999999865542
Q ss_pred CCCCCCCC-CCCCCC
Q 040938 474 KQKLPPPP-SDLPKC 487 (487)
Q Consensus 474 ~~~~~~~p-~~~~~c 487 (487)
.++.++| ++.+.|
T Consensus 495 -~~~~~~p~~~~~~C 508 (521)
T 1v10_A 495 -PIANAISPAWDDLC 508 (521)
T ss_dssp -HHHSCCCHHHHTHH
T ss_pred -hhccCCChHHhhhc
Confidence 2333334 456666
No 7
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=100.00 E-value=1.5e-81 Score=662.06 Aligned_cols=412 Identities=29% Similarity=0.530 Sum_probs=306.3
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCC-CCCCCCCCccee
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHA-SYPFPQPFKEVP 78 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~-~~~~~~~d~e~~ 78 (487)
||++|++++||||||++|||+|+||++|+|+|++++++||||||||.+.|+ +||+|+|||+++.+. ..+++..++|++
T Consensus 66 HG~~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~ 145 (503)
T 1hfu_A 66 HGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTI 145 (503)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSTTSE
T ss_pred cceeccCCCccCCCcccccCCcCCCCeEEEEEEeCCCCccEEEEecchhhhhCcceeeEEEcCCCCCcccCCCCCCceEE
Confidence 999999999999999999999999999999999778999999999999998 799999999987642 122322236999
Q ss_pred EEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCC-CceeeEEEeCCCEEEEEEEecCCCceEEEEEcCc
Q 040938 79 MIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSA-KDTFKLKVKPGKTYLLRMINAALNDELFFSIANH 157 (487)
Q Consensus 79 l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~-~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h 157 (487)
|+|+||+++...++. + .+.++++||||+.. +.|+. ...+.++|++|++|||||||+|+.+.+.|+|+||
T Consensus 146 l~l~Dw~~~~~~~~~------~--~~~~d~~liNG~~~--~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh 215 (503)
T 1hfu_A 146 ITLADWYHIPAPSIQ------G--AAQPDATLINGKGR--YVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGH 215 (503)
T ss_dssp EEEEEECSSCGGGCC-----------CCSEEEETTBCC--BTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTC
T ss_pred EEEcccccCChHHhc------C--CCCCCEEEECcccc--cCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCc
Confidence 999999998765431 1 14579999999974 56753 3458999999999999999999999999999999
Q ss_pred eEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC---CCCCcceEEEEEEecCCCCCCC
Q 040938 158 TLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA---SFDNTTTAGVLEYEQPNNANKN 234 (487)
Q Consensus 158 ~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~---~~~~~~~~ail~y~~~~~~~~~ 234 (487)
+|+|||+||++++|+.+++|.|+|||||||+|++++++ |+|||++.....+.. .+......++|+|.+.+...
T Consensus 216 ~~~vi~~DG~~~~p~~~~~l~l~pgeR~dvlv~~~~~~--g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-- 291 (503)
T 1hfu_A 216 ELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPV--DNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANAD-- 291 (503)
T ss_dssp CEEEEEETTEEEEEEEESBEEECTTCEEEEEEECCSCS--SEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSC--
T ss_pred eEEEEeccCccccccccCeEEEcccceEEEEEEcCCCc--cceeeeeccccCCcccccccCCCceEEEEEECCCCCCC--
Confidence 99999999999999999999999999999999998866 899999986432111 01222346999998764211
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCC-CCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeeccee
Q 040938 235 KKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPA-KVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVS 313 (487)
Q Consensus 235 ~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~-~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~ 313 (487)
+.. +..+...... ...++++.....|. ..+...+.++.+++.. ++. .|+|||++
T Consensus 292 ---p~~-~~~~~~~~l~-----~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~~--------------~~~--~~~iNg~~ 346 (503)
T 1hfu_A 292 ---PTT-SANPNPAQLN-----EADLHALIDPAAPGIPTPGAADVNLRFQLGF--------------SGG--RFTINGTA 346 (503)
T ss_dssp ---CCC-CCCSSCCBCC-----GGGCBBSSSCSCSSCSSTTCSSEEEECCEEE--------------ETT--EEEETTBC
T ss_pred ---CCC-CCCCccCCCc-----cccccccCccCCCCcccCCcceEEEEEEeec--------------cCc--eEEECCCc
Confidence 111 1111111110 01333332222221 1122334444332211 112 68999999
Q ss_pred ccCCChhhhhhhhcCcccCccc-CCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeee
Q 040938 314 FAQPNIALLQAHFFNKSKGVYT-TDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHL 392 (487)
Q Consensus 314 ~~~p~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~Hl 392 (487)
|..+..|+|.+.+.+ .+. .+ .+.+..++.++.|++|+|+++|.. ..+.|||||
T Consensus 347 ~~~~~~P~l~~~~~g----~~~~~~--------------------~~~~~~~~~v~~g~~vei~l~~n~--~~~~HP~HL 400 (503)
T 1hfu_A 347 YESPSVPTLLQIMSG----AQSAND--------------------LLPAGSVYELPRNQVVELVVPAGV--LGGPHPFHL 400 (503)
T ss_dssp CCCCSSCHHHHHHTT----CCSGGG--------------------SSSTTSEEEECSSCEEEEEEECCS--TTCCCEEEE
T ss_pred cCCCCCcchhhhhcC----Cccccc--------------------CCCCceEEEccCCCEEEEEEECCC--CCCCCCEEE
Confidence 998877776654432 110 01 123467899999999999999643 257999999
Q ss_pred cCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEe-cCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 393 HGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGV-PSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 393 Hg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v-~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
|||+|+||+++.+. .+|+.+|.|||||.| ++++|++|||++||||.|+|||||++|++.|||++|.|.+.+
T Consensus 401 HGh~F~Vl~~~~~~--------~~n~~~p~~rDTV~V~ppg~~v~irf~adnPG~W~~HCHil~H~~~GM~~~~~v~~~~ 472 (503)
T 1hfu_A 401 HGHAFSVVRSAGSS--------TYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMAN 472 (503)
T ss_dssp TTCCEEEEECTTCC--------CCCCSSBCEESEEECCSTTCEEEEEEECCSCEEEEEEESSHHHHHTTCEEEEEECHHH
T ss_pred ecceEEEEecCCCC--------ccccCCCCeeeeEEecCCCceEEEEEEcCCCeeeeEecCchhHhhCCCeEEEEECchh
Confidence 99999999997542 467889999999999 999999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCC-CCCCCC
Q 040938 472 GPKQKLPPPP-SDLPKC 487 (487)
Q Consensus 472 ~~~~~~~~~p-~~~~~c 487 (487)
..++.++| ...+.|
T Consensus 473 --~~~~~~~p~~~~~~C 487 (503)
T 1hfu_A 473 --TVDANNPPVEWAQLC 487 (503)
T ss_dssp --HHHHCCCCHHHHHHH
T ss_pred --hhhccCCChHHhhhc
Confidence 22333344 445555
No 8
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=100.00 E-value=1.9e-80 Score=660.66 Aligned_cols=410 Identities=24% Similarity=0.421 Sum_probs=304.4
Q ss_pred CccccCCCCCCCCCCCcccccCCC-CCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCcce-
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQT-GQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEV- 77 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~P-G~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~- 77 (487)
||++|++++||||||++|||+|+| |++|+|+|++ .++||||||||...|+ +||+|+|||+++... .+|.|.
T Consensus 95 HG~~~~~~~~~DG~~~~tq~~I~P~G~~~~Y~f~~-~q~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~-----~~d~d~~ 168 (559)
T 2q9o_A 95 HGIXQKDTNLHDGANGVTECPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPASL-----PYDIDLG 168 (559)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTTEEEEEEEEC-CSCEEEEEEECSTTGGGGTCEEEEEEECCCSS-----CCSEEEE
T ss_pred CCCccCCCCCcCCCCccccCccCCCCCeEEEEEEC-CCCEEEEEEEcccchhcCCceEEEEecCCCcC-----CCcccce
Confidence 999999999999999999999999 9999999998 7899999999999888 799999999987642 357787
Q ss_pred eEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCC-CCceeeEEEeCCCEEEEEEEecCCCceEEEEEcC
Q 040938 78 PMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCS-AKDTFKLKVKPGKTYLLRMINAALNDELFFSIAN 156 (487)
Q Consensus 78 ~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~-~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~ 156 (487)
+|+|+||+++...++..... .+ .+..++++||||+... .|. ....+.++|++|++|||||||+|+.+.+.|+|+|
T Consensus 169 ~l~l~Dw~~~~~~~~~~~~~-~~-~~~~~d~~liNG~~~~--~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~g 244 (559)
T 2q9o_A 169 VFPITDYYYRAADDLVHFTQ-NN-APPFSDNVLINGTAVN--PNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVN 244 (559)
T ss_dssp EEEEEEECSSCHHHHHHHHT-TS-CCCCBSEEEETTBCBC--TTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETT
T ss_pred EEEEeccccCCHHHHhhhhh-cC-CCCccceeEECCcccc--CcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECC
Confidence 99999999998877654322 22 3456899999999753 353 2346799999999999999999999999999999
Q ss_pred ceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc--CCCCCCCCCCcceEEEEEEecCCCCCCC
Q 040938 157 HTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP--YATGPASFDNTTTAGVLEYEQPNNANKN 234 (487)
Q Consensus 157 h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~--~~~~~~~~~~~~~~ail~y~~~~~~~~~ 234 (487)
|+|+|||+||.+++|+.++.|.|+|||||||+|++++.+ |+|||++.. ...+. ........|+|+|.+.+..
T Consensus 245 h~~~vi~~DG~~~~p~~~~~l~l~pgeR~dvlv~~~~~~--g~y~i~a~~~~~~~~~-~~~~~~~~ail~y~~~~~~--- 318 (559)
T 2q9o_A 245 HTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAP--DNYWFNVTFGGQAACG-GSLNPHPAAIFHYAGAPGG--- 318 (559)
T ss_dssp BCEEEEEETTEEEEEEEESCEEECTTCEEEEEEECCSCS--SEEEEEEECCGGGTTC-CBSSSCCEEEEEETTSCCS---
T ss_pred CceEEEecCCcccCceEeCeEEEccEEEEEEEEECCCCC--CcEEEEEEeccccccC-CCCCCceeEEEEECCCCCC---
Confidence 999999999999999999999999999999999998865 899999986 32222 1233456899999875321
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCC-CCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeeccee
Q 040938 235 KKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAK-VPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVS 313 (487)
Q Consensus 235 ~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~-~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~ 313 (487)
.|.. +..+. .+.....+ ..+.++.....|.. .....+.++.+..... .+..+.|+|||++
T Consensus 319 --~P~~-~~~~~-~~~~~~~~--~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~iNg~s 379 (559)
T 2q9o_A 319 --LPTD-EGTPP-VDHQCLDT--LDVRPVVPRSVPVNSFVKRPDNTLPVALDLT-------------GTPLFVWKVNGSD 379 (559)
T ss_dssp --CCCC-CCCCC-CCCTTCCC--SCCCBSSCCBCCCTTCCCCGGGEEEEEEECS-------------SSSSCEEEETTBC
T ss_pred --CCCC-CCCcC-CCcccccc--cccccCCCCCCCCcccccceeEEEEEEeecC-------------CCceEEEEECCEe
Confidence 1111 11110 01000000 12222211111110 1111234454443210 1234579999999
Q ss_pred ccCC-ChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecC-CCEEEEEEeeCCC-CCCCCCCe
Q 040938 314 FAQP-NIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPF-NASVEVVMQDTSI-IGAESHPL 390 (487)
Q Consensus 314 ~~~p-~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~-g~~v~~~l~n~~~-~~~~~HP~ 390 (487)
|..+ ..|+|.+.+.+. .++ ..+..++.++. +++++|+++|... ...+.|||
T Consensus 380 ~~~~~~~P~L~~~~~g~------~~~--------------------~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~ 433 (559)
T 2q9o_A 380 INVDWGKPIIDYILTGN------TSY--------------------PVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPM 433 (559)
T ss_dssp CCCCTTSCHHHHHHHTC------CCC--------------------CGGGCEEEECCSSCEEEEEEEECTTSSCCCCEEE
T ss_pred cccCCCCCcHhHhhcCC------ccC--------------------CCCceEEEcCCCCEEEEEEEeCCCccccCCCCcE
Confidence 9765 557666544321 111 12345667765 5677788888531 01478999
Q ss_pred eecCCceEEEEecC---------CCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccc
Q 040938 391 HLHGFNFFVVGQGF---------GNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGL 461 (487)
Q Consensus 391 HlHg~~f~Vl~~g~---------g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM 461 (487)
|||||+||||+++. |.|++.+....+|+.+|+|||||.|++++|++|||++||||.|||||||++|++.||
T Consensus 434 HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~IrF~adNPG~W~~HCHil~H~~~GM 513 (559)
T 2q9o_A 434 HLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGL 513 (559)
T ss_dssp EESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEEEEECCSCEEEEEEECCHHHHHTTC
T ss_pred EECCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCCccEEEEEEcCCCeeEEEEecchhHhhcCC
Confidence 99999999999987 666653223468899999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCC
Q 040938 462 KMAWIVNDGK 471 (487)
Q Consensus 462 ~~~~~V~~~~ 471 (487)
|++|.|..++
T Consensus 514 ~~~~~v~~~~ 523 (559)
T 2q9o_A 514 SVDFLERPAD 523 (559)
T ss_dssp EEEEEECHHH
T ss_pred eEEEEECcch
Confidence 9999986543
No 9
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=100.00 E-value=4.2e-71 Score=574.53 Aligned_cols=347 Identities=16% Similarity=0.192 Sum_probs=262.0
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCC--C
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQ--P 73 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~ 73 (487)
||++++++ |||+| ||+|+||++|+|+|++.+++||||||||.++ |. +||+|+|||+++.+...+++. .
T Consensus 77 HG~~~~~~--~DG~~---~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~~p~~y~ 151 (451)
T 2uxt_A 77 AGLQVPGP--LMGGP---ARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYG 151 (451)
T ss_dssp ETCCCCGG--GSCSG---GGCBCTTCEECCEEECCSCSEEEEEEECCTTTHHHHHHTTCEEEEEEECHHHHHSSSCCCBT
T ss_pred CCccCCCC--CCCCC---cCcCCCCCeEEEEEEcCCCCcceEEecCCCCchhhhHhhcceEEEEEecCcccccCCCccCC
Confidence 89999986 99998 9999999999999998556999999999954 55 899999999998654444443 4
Q ss_pred CcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEE
Q 040938 74 FKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFS 153 (487)
Q Consensus 74 d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~ 153 (487)
++|++|+|+||+++...++.. ...+.....+++++|||+.. |.++|++| +|||||||+|+.+.+.|+
T Consensus 152 ~~e~~l~l~D~~~~~~~~~~~--~~~~~~~~~~d~~liNG~~~----------p~~~v~~g-~~RlRliNa~~~~~~~~~ 218 (451)
T 2uxt_A 152 VDDFPVIIQDKRLDNFGTPEY--NEPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNSRRYQLQ 218 (451)
T ss_dssp TTEEEEEEEEEEECTTSCEEC--CCCSSSCCCCSEEEETTEES----------CEEEECSS-EEEEEEEECCSSCCEEEE
T ss_pred CceEEEEEEeeecCCCCceec--ccccCCCCcCCEEEECCccc----------ceEEecCC-EEEEEEEccCCceeEEEE
Confidence 789999999999876543211 11222345689999999974 78999999 999999999999999999
Q ss_pred E-cCceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC-------CCCCcceEEEEE
Q 040938 154 I-ANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA-------SFDNTTTAGVLE 224 (487)
Q Consensus 154 i-~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~-------~~~~~~~~ail~ 224 (487)
| +||+|+|||+||+++ +|+.++.+.|+|||||||+|++++. +.|+|++.....+.+ ..+.....++++
T Consensus 219 i~dg~~~~vi~~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 295 (451)
T 2uxt_A 219 MNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNG---DEVSITCGEAASIVDRIRGFFEPSSILVSTLVLT 295 (451)
T ss_dssp ETTSCCEEEEECSSSEEEEEEEESSEEECTTCEEEEEEECTTC---CCEEEEC----------------CCCCSCCEEEE
T ss_pred ECCCCeEEEEEeCCCccCCceEeceEEECceeEEEEEEEeCCC---CEEEEEecCccccccccccccccCCCCCCcceEE
Confidence 9 899999999999998 8999999999999999999999864 899999876432211 011223467888
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCc
Q 040938 225 YEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTM 304 (487)
Q Consensus 225 y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (487)
|........ .. ..+|. .|.++... + .+...++++.| . +
T Consensus 296 ~~~~~~~~~-----~~-~~~p~------------~L~~~~~~--~--~~~~~~~~~~l--~----------------~-- 333 (451)
T 2uxt_A 296 LRPTGLLPL-----VT-DSLPM------------RLLPTEIM--A--GSPIRSRDISL--G----------------D-- 333 (451)
T ss_dssp EEECSCCC----------CCCS------------CSSSSCCC--C--CCCSEEEEEEE--C----------------S--
T ss_pred EEecCCCcC-----cc-ccCcc------------ccCCCCCC--C--CCCcceEEEEE--e----------------e--
Confidence 876532110 00 11111 12211110 1 11222333322 1 1
Q ss_pred eeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCC
Q 040938 305 LAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIG 384 (487)
Q Consensus 305 ~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~ 384 (487)
.|+|||++|..+ ...+.++.|++|+|+|+|.
T Consensus 334 -~~~iNg~~f~~~--------------------------------------------~~~~~~~~G~~~~~~l~N~---- 364 (451)
T 2uxt_A 334 -DPGINGQLWDVN--------------------------------------------RIDVTAQQGTWERWTVRAD---- 364 (451)
T ss_dssp -SSSBTTBCCCTT--------------------------------------------CCCEEEETTCEEEEEEEEE----
T ss_pred -EEEECCEeCCCC--------------------------------------------CCcEEcCCCCEEEEEEECC----
Confidence 378999887321 1125678899999999995
Q ss_pred CCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCee----EEEeecchhhhhcc
Q 040938 385 AESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGA----WFMHCHLEVHTSWG 460 (487)
Q Consensus 385 ~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~----w~~HCHi~~H~~~G 460 (487)
+.||||||||+||||+++.. .+++.+|.|||||.| +++++|+|++||||. |||||||++|++.|
T Consensus 365 -~~HP~HLHGh~F~Vl~~~G~---------~~~~~~p~~rDTv~v--g~~~~i~~~~dnpg~~~g~w~~HCHil~H~d~G 432 (451)
T 2uxt_A 365 -EPQAFHIEGVMFQIRNVNGA---------MPFPEDRGWKDTVWV--DGQVELLVYFGQPSWAHFPFYFNSQTLEMADRG 432 (451)
T ss_dssp -EEEEEEETTCEEEEEEETTB---------CCCGGGSSCBSEEEE--EEEEEEEEECCSCCBTTBCEEEEESSHHHHHTT
T ss_pred -CCcCeEECCceEEEEeeCCc---------CCCcccCCCccEEEE--CCEEEEEEEeCCCCCCCCceEEeCCchhHHhCC
Confidence 58999999999999998622 345678999999999 999999999999988 99999999999999
Q ss_pred ceEEEEEeCCC
Q 040938 461 LKMAWIVNDGK 471 (487)
Q Consensus 461 M~~~~~V~~~~ 471 (487)
||++|.|.+.+
T Consensus 433 Mm~~~~v~~~~ 443 (451)
T 2uxt_A 433 SIGQLLVNPVP 443 (451)
T ss_dssp CEEEEEEECSC
T ss_pred CcEEEEEccCc
Confidence 99999997664
No 10
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=100.00 E-value=2.5e-70 Score=567.91 Aligned_cols=342 Identities=23% Similarity=0.334 Sum_probs=261.9
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeC-CCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCCCC
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVT-GQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQPF 74 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~d 74 (487)
||+++++ ||||++ +.|+||++|+|+|+++ +++||||||||.++ |. +||+|+|||+++.+. .+...++
T Consensus 74 HG~~~~~--~~DG~~----~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~-~~~~~~~ 146 (439)
T 2xu9_A 74 HGLPISP--KVDDPF----LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDA-IPELREA 146 (439)
T ss_dssp ETCCCCT--TTSCTT----CCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCEEEEECCGGGG-SHHHHTS
T ss_pred CCCCCCc--cccCCc----ccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeEEEEEcCcccc-CccCCCC
Confidence 8999875 899986 4599999999999985 58999999999864 55 899999999987542 1111358
Q ss_pred cceeEEeeeccccChHHH--HHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEE
Q 040938 75 KEVPMIFGEWWKADTEKI--INQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFF 152 (487)
Q Consensus 75 ~e~~l~l~d~~~~~~~~~--~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~ 152 (487)
+|++|+|+||+++..... .......| ..++.++|||+.. |.++|++| +|||||||+|+.+.+.|
T Consensus 147 ~e~~l~l~D~~~~~~~~~~~~~~~~~~g---~~~~~~~iNG~~~----------p~l~v~~g-~~RlRliN~~~~~~~~~ 212 (439)
T 2xu9_A 147 EEHLLVLKDLALQGGRPAPHTPMDWMNG---KEGDLVLVNGALR----------PTLVAQKA-TLRLRLLNASNARYYRL 212 (439)
T ss_dssp EEEEEEEEEECEETTEECCCCHHHHHHC---CCCSEEEETTEES----------CEEECSSS-EEEEEEEECCSSCCEEE
T ss_pred CcEEEEEEeeeeCCCCcCCCCccccccC---CCCCEEEECCccC----------CcEEecCC-eEEEEEEecCCCceEEE
Confidence 899999999998753100 00000112 3468999999974 78999999 99999999999999999
Q ss_pred EEcCceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC--------------CCCCc
Q 040938 153 SIANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA--------------SFDNT 217 (487)
Q Consensus 153 ~i~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~--------------~~~~~ 217 (487)
+|+||+|+|||+||+++ +|+.++++.|+|||||||+|+++++ |+|+|++.....+.. .....
T Consensus 213 ~i~gh~~~vi~~DG~~~~~p~~~~~l~l~pgeR~dv~v~~~~~---G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (439)
T 2xu9_A 213 ALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRLRKE---GRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRP 289 (439)
T ss_dssp EETTBCEEEEEETTEEEEEEEEESCEEECTTCEEEEEEECCSS---EEEEEEEECCCCCCEEEECSSSCCEEEECCSCCC
T ss_pred EECCceEEEEecCCCCCCCceEeceEEECCceeEEEEEEcCCC---ceEEEEecccccCCccccccccccccccCCCCCc
Confidence 99999999999999998 8999999999999999999999984 899999976543211 01123
Q ss_pred ceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcc
Q 040938 218 TTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTC 297 (487)
Q Consensus 218 ~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~ 297 (487)
...++|+|.+.+.. ..+ |.. +.++. +++ .+ ..++++.|++..
T Consensus 290 ~~~~~l~~~~~~~~------~~~-p~~---------------l~~~~--~l~--~~-~~~r~~~l~~~~----------- 331 (439)
T 2xu9_A 290 ETLLYLIAPKNPKP------LPL-PKA---------------LSPFP--TLP--AP-VVTRRLVLTEDM----------- 331 (439)
T ss_dssp EEEEEEEECSSCCC------CCC-CSC---------------CCCCC--CCC--CC-SEEEEEEEEEEG-----------
T ss_pred ceeEEEEecCCCcc------ccC-ccc---------------CCCcc--cCC--CC-CcceEEEEEeec-----------
Confidence 57788999765310 111 110 00000 001 11 124666665443
Q ss_pred cCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEE
Q 040938 298 QGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVM 377 (487)
Q Consensus 298 ~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l 377 (487)
.+ ..|++||++|..+ ...+.++.|++++|+|
T Consensus 332 ---~g--~~~~iNg~~~~~~--------------------------------------------~~~~~~~~g~~~~~~~ 362 (439)
T 2xu9_A 332 ---MA--ARFFINGQVFDHR--------------------------------------------RVDLKGQAQTVEVWEV 362 (439)
T ss_dssp ---GG--TEEEETTBCCCTT--------------------------------------------CCCEEECTTCEEEEEE
T ss_pred ---cC--ceEeECCEECCCC--------------------------------------------CCceecCCCCEEEEEE
Confidence 01 2589999888422 0124678899999999
Q ss_pred eeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhh
Q 040938 378 QDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHT 457 (487)
Q Consensus 378 ~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~ 457 (487)
+|.+ .+.||||||||+||||+++.+. +.+|.|||||.|+++++++|||++||||.|+|||||++|+
T Consensus 363 ~N~~---~~~HP~HLHG~~F~Vl~~~g~~-----------~~~p~~rDTv~v~p~~~v~i~f~adnpG~w~~HCHil~H~ 428 (439)
T 2xu9_A 363 ENQG---DMDHPFHLHVHPFQVLSVGGRP-----------FPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHE 428 (439)
T ss_dssp EECS---SSCEEEEESSCCBEEEEETTEE-----------CSSCCCBSEEEECTTCEEEEEEECCSCEEEEEEESSHHHH
T ss_pred EcCC---CCCCCceeCCCcEEEEeeCCCC-----------CCCCCCeEEEEeCCCCEEEEEEEcCCCCCEEEECCcchhh
Confidence 9975 5899999999999999997543 2368999999999999999999999999999999999999
Q ss_pred hccceEEEEE
Q 040938 458 SWGLKMAWIV 467 (487)
Q Consensus 458 ~~GM~~~~~V 467 (487)
+.|||++|+|
T Consensus 429 ~~GMm~~~~V 438 (439)
T 2xu9_A 429 DRGMMGVLEV 438 (439)
T ss_dssp HTTCEEEEEE
T ss_pred hcCCcEEEEe
Confidence 9999999988
No 11
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=100.00 E-value=4e-70 Score=576.34 Aligned_cols=372 Identities=16% Similarity=0.233 Sum_probs=266.1
Q ss_pred CccccCCCCCCCCCCC--cccccCCCCCeE---EEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCC
Q 040938 1 HGVRQLRSGWADGPAY--ITQCPIQTGQSY---VYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPF 70 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~--vtq~~I~PG~~~---~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~ 70 (487)
||+++++ +|||+|+ |+||+|+||++| +|+|++.+++||||||||.++ |+ +||+|+|||+++.+..+++
T Consensus 107 HGl~~~~--~~DG~p~~~i~~g~i~pG~~f~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~l 184 (513)
T 2wsd_A 107 HGGVTPD--DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKL 184 (513)
T ss_dssp ETCCCCG--GGSCCTTSCBCGGGSSBCTTCCCSEEEECCCSCCEEEEEEECCTTTHHHHHHHTCEEEEEEECGGGGGGCC
T ss_pred CCCcCCC--ccCCCCcccccCCcccCCCccceEEEEEecCCCccceEECCCCCCcchhhhhccCeEEEEEeccccccccC
Confidence 8999984 6999996 899999999555 999998668999999999975 44 7999999999987655566
Q ss_pred CCCCcceeEEeeeccccChHHHHHHHh----------hcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEE
Q 040938 71 PQPFKEVPMIFGEWWKADTEKIINQAL----------QTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLR 140 (487)
Q Consensus 71 ~~~d~e~~l~l~d~~~~~~~~~~~~~~----------~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR 140 (487)
+.++.|++|+|+||+++...++..... ........++++||||+.+ +.++|++ ++||||
T Consensus 185 p~~d~d~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~----------p~~~v~~-~~~RlR 253 (513)
T 2wsd_A 185 PSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVW----------PYLEVEP-RKYRFR 253 (513)
T ss_dssp CCGGGEEEEEEEEEEECTTSCEECCSSCSSCCTTSCSSCCCSCCCCSEEEETTEES----------CEEECCS-SEEEEE
T ss_pred CCCCCcEEEEEEeeecCCCCceecccccccccccccccccccccccceEEECCccc----------ceEEecC-CEEEEE
Confidence 677999999999998875543211100 0001234679999999985 6799988 589999
Q ss_pred EEecCCCceEEEEEcCc-eEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcc-eEEEeccCCCCCCCCCCc
Q 040938 141 MINAALNDELFFSIANH-TLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNAS-FLIAARPYATGPASFDNT 217 (487)
Q Consensus 141 ~iN~~~~~~~~~~i~~h-~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~-~~i~~~~~~~~~~~~~~~ 217 (487)
|||+|+.+.+.|+|++| +|+|||+||+++ +|+.++.|.|+|||||||+|++++.+ |. +.++... .+.......
T Consensus 254 liNa~~~~~~~~~i~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~--g~~~~l~~~~--~~~~~~~~~ 329 (513)
T 2wsd_A 254 VINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYE--GESIILANSA--GCGGDVNPE 329 (513)
T ss_dssp EEECCSSCCEEEEETTCCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECGGGT--TCEEEEEECC--CSSSSCCTT
T ss_pred EEccCCcceEEEEECCCCeEEEEccCCCcccCceEeCeEEECCeeeEEEEEECCCCC--CcEEEEEecc--cccccCCCC
Confidence 99999999999999999 999999999999 89999999999999999999999865 55 4444332 111111122
Q ss_pred ceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcc
Q 040938 218 TTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTC 297 (487)
Q Consensus 218 ~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~ 297 (487)
...++|+|........ +.. ...|.. +..+... + ..+...++++.|+..+..
T Consensus 330 ~~~~il~~~~~~~~~~----~~~-~~~p~~------------l~~~~~~--~-~~~~~~~~~~~l~~~~~~--------- 380 (513)
T 2wsd_A 330 TDANIMQFRVTKPLAQ----KDE-SRKPKY------------LASYPSV--Q-HERIQNIRTLKLAGTQDE--------- 380 (513)
T ss_dssp TTTEEEEEECCSCCSS----CCC-CCCCSB------------CSCCGGG--C-CCCEEEEEEEEEEEEECT---------
T ss_pred CCcceEEEEeccCccc----Ccc-CCCCcc------------ccCCCCc--c-cCCCcceEEEEEEeecCC---------
Confidence 3457899976532111 000 111110 1000000 0 011123455555433211
Q ss_pred cCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEE
Q 040938 298 QGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVM 377 (487)
Q Consensus 298 ~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l 377 (487)
. ....|++||++|..+ ..+.++.|++|+|+|
T Consensus 381 ---~-g~~~~~iNg~~~~~~---------------------------------------------~~~~~~~g~~~~w~l 411 (513)
T 2wsd_A 381 ---Y-GRPVLLLNNKRWHDP---------------------------------------------VTETPKVGTTEIWSI 411 (513)
T ss_dssp ---T-SCEEEEETTBCTTSC---------------------------------------------CCBCCBTTCEEEEEE
T ss_pred ---C-CCceEeECCccCCCc---------------------------------------------ccEecCCCCEEEEEE
Confidence 1 223578999887322 012356799999999
Q ss_pred eeCCCCCCCCCCeeecCCceEEEEecCC---CCCCCC------CCCCCCCCCCCccceEEecCCcEEEEEEEc-CCCeeE
Q 040938 378 QDTSIIGAESHPLHLHGFNFFVVGQGFG---NFDPSK------DPAKFNLVDPAERNTVGVPSGGWVAIRFLA-DNPGAW 447 (487)
Q Consensus 378 ~n~~~~~~~~HP~HlHg~~f~Vl~~g~g---~~~~~~------~~~~~n~~~p~~rDtv~v~~~~~~~irf~~-dnpG~w 447 (487)
+|.+ .+.||||||||+||||+++.+ .|+... .+......++.|||||.|+|+++++|+|++ ||||.|
T Consensus 412 ~N~~---~~~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnpG~w 488 (513)
T 2wsd_A 412 INPT---RGTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRY 488 (513)
T ss_dssp EECS---SSCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCCEEE
T ss_pred EcCC---CCCcCEeEeCceEEEEEecCcccccccccccccccCCCCCCCccccCcccEEEeCCCCEEEEEEEecCCCCCE
Confidence 9975 479999999999999998742 121110 001112234569999999999999999999 899999
Q ss_pred EEeecchhhhhccceEEEEEeCC
Q 040938 448 FMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 448 ~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
||||||++|++.|||+.|+|.++
T Consensus 489 ~~HCHil~H~~~GMm~~~~V~~~ 511 (513)
T 2wsd_A 489 VWHCHALEHEDYDMMRPMDITDP 511 (513)
T ss_dssp EEEESCHHHHTTTCEEEEEEBCC
T ss_pred EEEcCChhhhhcCCceeEEEeCC
Confidence 99999999999999999999754
No 12
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=100.00 E-value=2.3e-69 Score=570.89 Aligned_cols=363 Identities=20% Similarity=0.306 Sum_probs=267.2
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeeccccccc----c-ccceeeEEEeCCCCCCCCCCC--C
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWL----R-ATLYGPIVILPKRHASYPFPQ--P 73 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~----~-~Gl~G~liV~~~~~~~~~~~~--~ 73 (487)
||+++++ +|||++ ||+|+||++|+|+|++.+++||||||||.+++ . +||+|+|||+++.+..++++. +
T Consensus 96 HGl~~~~--~~DG~~---~~~i~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~lp~~~~ 170 (534)
T 3abg_A 96 HGSFSRA--AFDGWA---EDITEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLPSGYG 170 (534)
T ss_dssp ETCCCCT--TTTTCS---SSCBSSCSCCCEEECCCSSSCEEEEEECCTTCHHHHHHTBCEEEEEEECTTTTTSCTTCCHH
T ss_pred CCCcCCC--CCCCCC---CCCCCCCCeEEEEEecCCcceeEEEecCccccchhhhhhcceEEEEEECCcccccCCCccCC
Confidence 9999986 599985 89999999999999986668999999999864 3 799999999998876665554 3
Q ss_pred CcceeEEeeeccccChHHHHHHHhhcCC-CCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEE
Q 040938 74 FKEVPMIFGEWWKADTEKIINQALQTGA-APNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFF 152 (487)
Q Consensus 74 d~e~~l~l~d~~~~~~~~~~~~~~~~g~-~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~ 152 (487)
+.|++|+|+||+++...++.. ..+. ....+|.++|||+.+ +.++|++ ++|||||||+|+.+.+.|
T Consensus 171 ~~d~~l~l~d~~~~~~g~~~~---~~~~~~~~~gd~~lvNG~~~----------p~~~v~~-~~~RlRliNa~~~~~~~l 236 (534)
T 3abg_A 171 EFDIPMILTSKQYTANGNLVT---TNGELNSFWGDVIHVNGQPW----------PFKNVEP-RKYRFRFLDAAVSRSFGL 236 (534)
T ss_dssp HHSCCEEEEEECBCSSSCBCC---CTTCSSCCCCSEEEETTEES----------CBCBCCS-SEEEEEEEECCSSCCEEE
T ss_pred cceEEEEEeeeeecCCCceec---cCCCCccccCceeccCCccC----------ceEEecC-cEEEEEEEecCCcceEEE
Confidence 678999999998875433211 1111 234679999999975 6789988 599999999999999999
Q ss_pred EEcC-------ceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCC-CCCC-CCCCcceEEE
Q 040938 153 SIAN-------HTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYA-TGPA-SFDNTTTAGV 222 (487)
Q Consensus 153 ~i~~-------h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~-~~~~-~~~~~~~~ai 222 (487)
+|++ |+|+|||+||+++ +|+.++.|.|+|||||||+|++++.+ |.+|+|++.... .+.+ ..+.....++
T Consensus 237 ~i~~~~~~~~~h~~~vIa~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~-g~~~~l~~~~~~~~~~~~~~~~~~~~~i 315 (534)
T 3abg_A 237 YFADTDAIDTRLPFKVIASDSGLLEHPADTSLLYISMAERYEVVFDFSDYA-GKTIELRNLGGSIGGIGTDTDYDNTDKV 315 (534)
T ss_dssp EECCSSSTTCCCCEEEEEETTEEEEEEEEESCEEECTTCEEEEEEECSSCT-TSEEEEECCCCSSSSCCSCSSSTTTSEE
T ss_pred EEecccCcCCCccEEEEEeCCCcccCceEeceEEECCccEEEEEEEcCCCC-CceEEEEeccccccccccccCcCCccee
Confidence 9987 9999999999865 89999999999999999999999854 347999985422 1211 0111234588
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCC
Q 040938 223 LEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNN 302 (487)
Q Consensus 223 l~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (487)
|+|........ ... ...|. .++.+. .+. .+...++++.+ .. .+
T Consensus 316 l~~~~~~~~~~----~~~-~~~P~------------~L~~~~---~p~-~~~~~~~~~~~--~~--------------~~ 358 (534)
T 3abg_A 316 MRFVVADDTTQ----PDT-SVVPA------------NLRDVP---FPS-PTTNTPRQFRF--GR--------------TG 358 (534)
T ss_dssp EEEECCCCSSC----SCC-CCCCC------------CCCCCS---CCC-CCCCCCEEEEC--SC--------------CC
T ss_pred EEEecCCCCcC----CCC-CCCcc------------ccccCC---CCC-CccccceEEEE--ec--------------cC
Confidence 99876532100 000 01110 111111 111 11223444432 11 11
Q ss_pred CceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCC
Q 040938 303 TMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSI 382 (487)
Q Consensus 303 ~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~ 382 (487)
..|+|||++|..+.. |. ...++.|++++|+|+|.+.
T Consensus 359 --~~w~iNG~~f~~~~~-----------------------p~-------------------l~~v~~G~~~~w~i~N~~~ 394 (534)
T 3abg_A 359 --PTWTINGVAFADVQN-----------------------RL-------------------LANVPVGTVERWELINAGN 394 (534)
T ss_dssp --STTCCCCBTTBCTTS-----------------------CC-------------------CCEECTTCEEEEEEEECSS
T ss_pred --ceeEECCcccCCCCC-----------------------cc-------------------eeeccCCCEEEEEEEcCCC
Confidence 248899998843210 10 1256789999999999652
Q ss_pred CCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEE-cCCCeeEEEeecchhhhhccc
Q 040938 383 IGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFL-ADNPGAWFMHCHLEVHTSWGL 461 (487)
Q Consensus 383 ~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~-~dnpG~w~~HCHi~~H~~~GM 461 (487)
.+.||||||||+||||+++.|.+. + ...++.+ .|||||.|+|+++++|||+ +||||.|||||||++|++.||
T Consensus 395 --~~~HP~HLHG~~F~Vl~~~~g~~~--~--~~~~~~~-~~rDTV~v~pg~~v~I~~~~adnpG~w~~HCHil~H~d~GM 467 (534)
T 3abg_A 395 --GWTHPIHIHLVDFKVISRTSGNNA--R--TVMPYES-GLKDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDM 467 (534)
T ss_dssp --SCCCCEEESSCCEEEEEESSCCSS--S--CCCSGGG-SCBSEECCCSSEEEEEEEECCSCCEEEEEEESCHHHHHTTC
T ss_pred --CCCcCEEECCeeEEEEEEcCCCCc--C--cCCcccc-CCcCeEEcCCCCEEEEEEEECCCCccEEEecChHHHHhcCC
Confidence 468999999999999999655432 1 1245556 8999999999999999998 899999999999999999999
Q ss_pred eEEEEEeCCC
Q 040938 462 KMAWIVNDGK 471 (487)
Q Consensus 462 ~~~~~V~~~~ 471 (487)
|+.|.|...+
T Consensus 468 m~~~~V~~~~ 477 (534)
T 3abg_A 468 MAAFNATVLP 477 (534)
T ss_dssp EEEEEECSSC
T ss_pred ceEEEEEecc
Confidence 9999998765
No 13
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=100.00 E-value=7.7e-70 Score=564.20 Aligned_cols=348 Identities=19% Similarity=0.298 Sum_probs=261.7
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccc----cccc-ccceeeEEEeCCCCCCCCCCCCC-
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHI----SWLR-ATLYGPIVILPKRHASYPFPQPF- 74 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~~~-~Gl~G~liV~~~~~~~~~~~~~d- 74 (487)
||++++ ++|||+|+ |+|+||++|+|+|++++++||||||||. ..|. +||+|+|||+++.+. ++++ ++
T Consensus 65 HG~~~~--~~~DG~~~---~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~~~~q~~~Gl~G~liV~~~~~~-~~l~-~d~ 137 (448)
T 3aw5_A 65 HGFDVN--WHNDAHPS---FAITPGESYNYSFDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSD-LGFK-YGV 137 (448)
T ss_dssp ETCCCC--HHHHTCGG---GCBCTTCEEEEEEECCSCSEEEEEEECCTTTHHHHHHTTCCEEEEEECTTTT-TTCC-BTT
T ss_pred CCccCC--CccCCCCC---ccCCCCCEEEEEEEcCCCCCceEeccCCCCchHHHHhccceEEEEEeCCccc-cCCC-CCC
Confidence 899997 46999997 9999999999999986689999999994 4465 899999999998764 3333 45
Q ss_pred cceeEEeeeccccChHHHHH----HHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceE
Q 040938 75 KEVPMIFGEWWKADTEKIIN----QALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDEL 150 (487)
Q Consensus 75 ~e~~l~l~d~~~~~~~~~~~----~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~ 150 (487)
+|++|+|+||+++. .++.. ..... ...++.++|||+.. +.++|++| +|||||||+|+.+.+
T Consensus 138 ~e~~l~l~D~~~~~-~~~~~~~~~~~~~~---~~~~~~~liNG~~~----------p~~~v~~g-~~RlRliNa~~~~~~ 202 (448)
T 3aw5_A 138 NDLPLVISDRRFIG-GAPVYNPTPMEMIA---GFLGNAVLVNGVKD----------AVFKLSGG-SYRLRLVNGSNARLY 202 (448)
T ss_dssp TEEEEEEEEEEEET-TEEECCCCHHHHHH---CCCCSEEEETTEET----------CEEEEEEE-EEEEEEEECSSSCCE
T ss_pred ceEEEEEEeeccCC-Cccccccccccccc---CccccEEEECCccc----------ceEEECCC-eEEEEEEcCCCcceE
Confidence 89999999999876 43211 00111 24679999999974 78999999 999999999999999
Q ss_pred EEEE--cC---ceEEEEEecCcccc-eeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC----------CC
Q 040938 151 FFSI--AN---HTLTVVETDAVYVK-PIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA----------SF 214 (487)
Q Consensus 151 ~~~i--~~---h~~~via~DG~~v~-P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~----------~~ 214 (487)
.|+| +| |+|+|||+||++++ |+.++.|.|+|||||||+|++++ +.|+|++.....+.+ ..
T Consensus 203 ~~~i~~~~~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~----~~y~l~~~~~~~~~g~~~~~~~~~~~~ 278 (448)
T 3aw5_A 203 MLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELGE----GVYLLKNTPFDPMHLEMGHGMQEALPE 278 (448)
T ss_dssp EEEEEETTSCEECEEEEEETTEEEEEEEEESCEEECTTCEEEEEEEECS----EEEEEEECCCCCCCCTTSSCCCCSSCT
T ss_pred EEEEEcCCCCCccEEEEEeCCCccCCceEeceEEECCcceEEEEEECCC----CceEEEccccccccCccccccccccCC
Confidence 9999 99 99999999999997 99999999999999999999983 689999987554221 11
Q ss_pred CCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCC
Q 040938 215 DNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQN 294 (487)
Q Consensus 215 ~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~ 294 (487)
......++++|.+..... .+ ..+ ..+.. ...+...++++.+..+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~----~p---~~L----------------~~lp~----~~~~~~~~~~~~l~~~~-------- 323 (448)
T 3aw5_A 279 GSEYTIATFLVEGKGEAV----PV---EAL----------------SDPPP----EPPKPTRTRRFALSLSG-------- 323 (448)
T ss_dssp TSCEEEEEEEEEEECCCC----CC---CCC----------------SCCCC----CCCCCSEEEEEEEEEET--------
T ss_pred CCCceEEEEEEcCCCCCC----Cc---ccc----------------CCCCC----CCCCCCceEEEEEeCCC--------
Confidence 223467888887653210 00 001 11100 01223345566554321
Q ss_pred CcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEE-ecCCCEE
Q 040938 295 QTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVA-LPFNASV 373 (487)
Q Consensus 295 ~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-v~~g~~v 373 (487)
..|+|||++|..+ .| .+. ++.|++|
T Consensus 324 ----------~~~~iNg~~~~~~------------------------~p--------------------~~~~~~~g~~v 349 (448)
T 3aw5_A 324 ----------MQWTINGMFWNAS------------------------NP--------------------LFEHVSVEGVE 349 (448)
T ss_dssp ----------TEEEETTBCCCTT------------------------CT--------------------TCCCEEECEEE
T ss_pred ----------ceeeECCCcCCCC------------------------CC--------------------ceeccCCCCeE
Confidence 2599999988422 01 123 5679999
Q ss_pred EEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCC----CCCCCCccceEEecCCcEEEEE--EE---cCCC
Q 040938 374 EVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKF----NLVDPAERNTVGVPSGGWVAIR--FL---ADNP 444 (487)
Q Consensus 374 ~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~----n~~~p~~rDtv~v~~~~~~~ir--f~---~dnp 444 (487)
+|+|.|.+. .+.||||||||+||||+++ |.+........+ +..++.|||||.|+|+++++|+ |+ +|||
T Consensus 350 ~~~i~N~~~--~~~HP~HLHG~~F~Vl~~~-G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~adnp 426 (448)
T 3aw5_A 350 LWEIVNDKA--SMPHPMHLHGFPMWIIERK-DSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQL 426 (448)
T ss_dssp EEEEEECSS--SCCEEEEESSSCBEEEEEE-SCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTTCE
T ss_pred EEEEEcCCC--CCCcCEEECCceEEEEEec-CCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCCCc
Confidence 999999651 4789999999999999985 443211111122 3345679999999999999765 99 9999
Q ss_pred eeEEEeecchhhhhccceEEEEEe
Q 040938 445 GAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 445 G~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
|||||||++|++.|||++|.|+
T Consensus 427 --w~~HCHil~H~d~GMm~~~~V~ 448 (448)
T 3aw5_A 427 --FPFHCHNLEHEDGGMMINIAVK 448 (448)
T ss_dssp --EEEEESSHHHHHTTCEEEEEEC
T ss_pred --EEEEcCChHHHhCCCceEEEeC
Confidence 9999999999999999999884
No 14
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=100.00 E-value=1e-68 Score=580.37 Aligned_cols=402 Identities=16% Similarity=0.212 Sum_probs=257.5
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCCCCc
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQPFK 75 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~d~ 75 (487)
||+++.+ +|||++ ||+|+||++|+|+|++.+++||||||||.++ |+ +||+|+|||+++.+..++++.+++
T Consensus 133 HGl~~~~--~~DGv~---q~~I~PG~~~~Y~f~~~q~~GT~WYHsH~~g~t~~q~~~Gl~G~liI~d~~~~~~~~p~~d~ 207 (612)
T 3gyr_A 133 HGAQTGG--GNDGWA---DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDR 207 (612)
T ss_dssp ETCCCCT--TTSCCG---GGCBCTTCEEEEEECCCSCSEEEEEEECCTTTHHHHTTTTCEEEEEEECHHHHTTTCCCGGG
T ss_pred CCCccCC--cccCcc---cCccCCCCCEEEEEEcCCCCceEEEeeCCCCcchhhhhccceeEEEEcCccccccCCCCCCc
Confidence 8999974 699985 9999999999999998677899999999854 55 899999999998877777778899
Q ss_pred ceeEEeeeccccChHHHHHHHh-------------hc---CCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEE
Q 040938 76 EVPMIFGEWWKADTEKIINQAL-------------QT---GAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLL 139 (487)
Q Consensus 76 e~~l~l~d~~~~~~~~~~~~~~-------------~~---g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rl 139 (487)
|++|+|+||+++...+...... .. ......++.++|||+.. |.+.|++ ++|||
T Consensus 208 e~~lvl~Dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~vNG~~~----------p~~~v~~-~~yRl 276 (612)
T 3gyr_A 208 EIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW----------PYADVDD-GWYRL 276 (612)
T ss_dssp EEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES----------CEEEEES-SEEEE
T ss_pred cEEEEEEEEecccccccccccccccCCccccccCCCCCCccccCccCceeeecCCcc----------ceEeccC-cEEEE
Confidence 9999999998764432210000 00 01234678999999974 7788876 68999
Q ss_pred EEEecCCCceEEEEEcCc-------eEEEEEecCccc-ceeEee------EEEeCCCceEEEEEEecCCCCCcce-EEEe
Q 040938 140 RMINAALNDELFFSIANH-------TLTVVETDAVYV-KPIKTK------VVLITPGQTTNVLLKAKHKSPNASF-LIAA 204 (487)
Q Consensus 140 R~iN~~~~~~~~~~i~~h-------~~~via~DG~~v-~P~~~~------~l~l~pG~R~dv~v~~~~~~~~g~~-~i~~ 204 (487)
||||+|+.+.+.|+|++| +|+|||+||+++ +|+.++ .|.|+|||||||+|++++.. +.+ +++.
T Consensus 277 RliNas~~~~~~l~i~~h~~~~~~~~~~vIa~DG~~l~~Pv~v~~p~~~~~l~i~pGeRydVlV~~~~~~--~~~~~~~~ 354 (612)
T 3gyr_A 277 RLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDFRALG--GRRLRLVD 354 (612)
T ss_dssp EEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEECTTCT--TCEEEEEE
T ss_pred EEEeccCCcceeEEEccCCCccCCceEEEEEeCCCccccceeccCcccccEEEeccceEEEEEEECCCCC--ceEEEEEe
Confidence 999999999999999988 599999999999 577664 79999999999999999875 444 4443
Q ss_pred ccCCCCCC---CCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEE
Q 040938 205 RPYATGPA---SFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFF 281 (487)
Q Consensus 205 ~~~~~~~~---~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~ 281 (487)
........ .........+++|......... ...+ |......... . ....+ ...+...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-p~~~~~~~~~-----------~-----~~~~~-~~~~~~~ 414 (612)
T 3gyr_A 355 KGPGAPAGTPDPLGGVRYPEVMEFRVRETCEED--SFAL-PEVLSGSFRR-----------M-----SHDIP-HGHRLIV 414 (612)
T ss_dssp CCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCC--CCCC-CSSCCSSCCC-----------C-----CTTSC-CEEEEEE
T ss_pred cCCcCCcCccCccccccccceeeecccCCCCCC--cccc-cccccccccc-----------c-----ccccc-ccccccc
Confidence 32211111 1112234566777654321110 1111 1100000000 0 00000 0001111
Q ss_pred EEecccccCCCCCCcccCCCCCceeeeeccee----ccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcc
Q 040938 282 FTVGLGLSPCPQNQTCQGPNNTMLAASINNVS----FAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIM 357 (487)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~----~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 357 (487)
+...... ........+.++... +..+....+.. ...+..+..+..++ .
T Consensus 415 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~n~------~ 466 (612)
T 3gyr_A 415 LTPPGTK----------GSGGHPEIWEMAEVEDPADVQVPAEGVIQV------------TGADGRTKTYRRTA------R 466 (612)
T ss_dssp EECTTCT----------TTTTCCEEEEEEECC-----CCSCTTEEEE------------ECTTSCEEEEEEEE------C
T ss_pred ccccccc----------cccccccccccccccccccccccccceeee------------ccCCCccccccccC------c
Confidence 1000000 000000111111110 00000000000 00000000000000 0
Q ss_pred cCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCC---------------CCCCCCCCCCC
Q 040938 358 VSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSK---------------DPAKFNLVDPA 422 (487)
Q Consensus 358 ~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~---------------~~~~~n~~~p~ 422 (487)
...+...+.++.|++|+|+|+|.+ .+.||||||||+||||+++.+.+.... .....+..++.
T Consensus 467 ~~~~~~~~~~~~g~~~~w~i~N~~---~~~HP~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (612)
T 3gyr_A 467 TFNDGLGFTIGEGTHEQWTFLNLS---PILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELG 543 (612)
T ss_dssp STTSCCCEEEETTCEEEEEEEECS---SSCEEEEESSCEEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTCSS
T ss_pred cCCCCcceEeCCCCEEEEEEEcCC---CCCcCEeECCCcEEEEeecCCcCccccccccccccccccccccccCcccccCC
Confidence 011234578899999999999975 589999999999999998644322210 01234567789
Q ss_pred ccceEEecCCcEEEEEEE-cCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 423 ERNTVGVPSGGWVAIRFL-ADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 423 ~rDtv~v~~~~~~~irf~-~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
|||||.|+++++++|||+ +||||.|||||||++|||.|||+.|+|.+++
T Consensus 544 ~kDTv~v~~~~~v~i~~rfadnpG~w~~HCHil~Hed~GMM~~f~V~~p~ 593 (612)
T 3gyr_A 544 HKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPE 593 (612)
T ss_dssp CBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHHTTCEEEEEEECHH
T ss_pred CCcEEEECCCCEEEEEEEeCCCCcceEEcCCChHHHhCcCCcceEEeCCc
Confidence 999999999999999998 7999999999999999999999999998765
No 15
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.3e-66 Score=541.30 Aligned_cols=355 Identities=21% Similarity=0.289 Sum_probs=252.9
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCC-ccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCCCC
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQ-RGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQPF 74 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~-~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~d 74 (487)
||++++ ++|||+| ||+|+||++|+|+|+++++ +||||||||.++ |+ +||+|+|||+++.+..+++ +
T Consensus 109 HGl~~~--~~~DG~p---q~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~~q~~~GL~G~lIV~~~~~~~~~~---~ 180 (481)
T 3zx1_A 109 HGVPVP--PDQDGSP---HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHL---K 180 (481)
T ss_dssp ETCCCC--GGGSCCT---TSCBCTTCEEEEEEECCTTCCEEEEEECCCTTTHHHHHHTTCCEEEEEECSSCTTTTS---E
T ss_pred cCcccC--CccCCCc---cCcCCCCCeEEEEEeCCCCCCceEEEeecCCCcchhhhhccceEEEEEcCccccccCC---C
Confidence 899986 5799996 9999999999999998543 899999999853 55 8999999999987654433 3
Q ss_pred cceeEEeeeccccChHHHHH---HHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEE
Q 040938 75 KEVPMIFGEWWKADTEKIIN---QALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELF 151 (487)
Q Consensus 75 ~e~~l~l~d~~~~~~~~~~~---~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~ 151 (487)
.++ |+|+||+++...++.. .....| ..++.++|||+.. |.++|++|+ ||||||+|+.+.+.
T Consensus 181 ~~~-l~l~D~~~~~~g~~~~~~~~~~~~g---~~gd~~lvNG~~~----------p~l~v~~g~--RlRliNa~~~~~~~ 244 (481)
T 3zx1_A 181 EKD-LMISDLRLDENAQIPNNNLNDWLNG---REGEFVLINGQFK----------PKIKLATNE--RIRIYNATAARYLN 244 (481)
T ss_dssp EEE-EEEEEECCBTTSCCCCCCHHHHHHC---CCCSEEEETTEES----------CEEEEETTE--EEEEEECCSSCCEE
T ss_pred cee-EEEEEEeccCCCccccccchhhccC---CcCCEEEECCccC----------ceEEecCCC--EEEEEecCCCeEEE
Confidence 444 9999999875433210 000112 3579999999974 789999998 99999999999999
Q ss_pred EEEcCceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCC-CCcceEEEEEEecCC
Q 040938 152 FSIANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASF-DNTTTAGVLEYEQPN 229 (487)
Q Consensus 152 ~~i~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~ail~y~~~~ 229 (487)
|+|+||+|+|||+||+++ +|+.++.|.|+|||||||+|++++. +.|.|.+...+...... .......++++....
T Consensus 245 l~i~g~~~~vIa~DGg~~~~P~~~~~l~l~pgeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (481)
T 3zx1_A 245 LRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKD---GNFKLESAYYDRDKMMVKEEPNTLFLANINLKK 321 (481)
T ss_dssp EEETTCEEEEEEETTEEEEEEEEESSEEECTTCEEEEEEECSSC---EEEEEEECCCCCCCSSCCCCCCCEEEEEEEEEC
T ss_pred EEECCCceEEEEcCCCccCCceEeCeEEECCccEEEEEEEcCCC---cEEEEEEecccccCccccCCCCceeEEEEecCC
Confidence 999999999999998877 8999999999999999999999875 78999876543311100 112233444443321
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCC-----c
Q 040938 230 NANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNT-----M 304 (487)
Q Consensus 230 ~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 304 (487)
.. ..+ |. .+..+.. . +.+ ...+++.|...... .. .......+. .
T Consensus 322 ~~------~~l-P~---------------~l~~~~~--~--~~~-~~~r~~~l~~~~~~--~~--~~~~~~~~~~~~~~~ 370 (481)
T 3zx1_A 322 EN------VEL-PK---------------NLKIFKP--S--EEP-KEFKEIIMSEDHMQ--MH--GMMGKSEGELKIALA 370 (481)
T ss_dssp CC------CCC-CS---------------CSCCCCC--C--CCC-CEEEEEEEEECCST--TT--TGGGCCHHHHHHHHH
T ss_pred CC------ccC-Cc---------------cccCCCC--C--CCC-CcEEEEEEeccchh--cc--ccccccccccccccc
Confidence 10 111 11 0111100 0 011 13444544432210 00 000000000 0
Q ss_pred eeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCC
Q 040938 305 LAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIG 384 (487)
Q Consensus 305 ~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~ 384 (487)
..|+|||+.|.. ....+.++.|++|+|+|.|.+
T Consensus 371 ~~~~iNG~~~~~--------------------------------------------~~~~~~~~~G~~v~w~l~N~~--- 403 (481)
T 3zx1_A 371 SMFLINRKSYDL--------------------------------------------KRIDLSSKLGVVEDWIVINKS--- 403 (481)
T ss_dssp TTEEETTBCCCT--------------------------------------------TCCCEEEETTCCEEEEEEECS---
T ss_pred ceeEECCEeCCC--------------------------------------------CCceEEeCCCCEEEEEEEcCC---
Confidence 138899877621 012357889999999999964
Q ss_pred CCCCCeeecCCceEEEEec-CCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceE
Q 040938 385 AESHPLHLHGFNFFVVGQG-FGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKM 463 (487)
Q Consensus 385 ~~~HP~HlHg~~f~Vl~~g-~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~ 463 (487)
.+.|||||||+.|+|+++. .|. .....++.|||||.|+||++++|+|++||||.|||||||++|+|.|||+
T Consensus 404 ~~~Hp~HlHG~~F~vl~~~~~g~--------~~~~~~~~~kDTv~v~Pg~~~~i~~~~d~pG~w~~HCHil~H~d~GMm~ 475 (481)
T 3zx1_A 404 HMDHPFHIHGTQFELISSKLNGK--------VQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMG 475 (481)
T ss_dssp SSCEEEEETTCCEEEEEEEETTE--------EEECSSCCEESEEEECTTCEEEEEECCCSCEEEEEEESSHHHHHTTCEE
T ss_pred CCceeEEEeccEEEEEEecccCC--------CCCcccCcccceEEECCCCEEEEEEEcCCCeeEEEEcCChHHHhcCCce
Confidence 5899999999999999983 121 1112357899999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 040938 464 AWIVN 468 (487)
Q Consensus 464 ~~~V~ 468 (487)
.|+|+
T Consensus 476 ~~~V~ 480 (481)
T 3zx1_A 476 NLEVK 480 (481)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 16
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=100.00 E-value=1.2e-66 Score=554.28 Aligned_cols=400 Identities=17% Similarity=0.259 Sum_probs=264.0
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCCCCc
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQPFK 75 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~d~ 75 (487)
||+++.+. +||+| ||+|+||++|+|+|++.+++||||||||.++ |+ +||+|+|||+++++..++++.+|+
T Consensus 133 HG~~~~~~--~DG~p---~~~i~PG~s~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~~~~~~lp~~d~ 207 (612)
T 2g23_A 133 HGAQTGGG--NDGWA---DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDR 207 (612)
T ss_dssp ETCCCCTT--TSCCG---GGCBCTTCEEEEEECCCSCSCEEEEEECCTTTHHHHTTTTCEEEEEEECHHHHTTTCCCGGG
T ss_pred CCCCCCCc--cCCCC---cCCCCCCCeEEEEEEecCCCceEEEecccCCcchhhhhccceeEEEEcCcccccccCCCCcc
Confidence 89999864 99986 9999999999999998668999999999986 55 899999999998766666777899
Q ss_pred ceeEEeeeccccChHHH-HH-HH------hh----cCC----CCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEE
Q 040938 76 EVPMIFGEWWKADTEKI-IN-QA------LQ----TGA----APNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLL 139 (487)
Q Consensus 76 e~~l~l~d~~~~~~~~~-~~-~~------~~----~g~----~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rl 139 (487)
|++|+|+||+++...+. +. .. .. .+. .+..+|.+||||+.+ |.++|++| +|||
T Consensus 208 d~~l~l~Dw~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~p~~~~~~gd~~lVNG~~~----------p~~~V~~g-~yRl 276 (612)
T 2g23_A 208 EIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW----------PYADVDDG-WYRL 276 (612)
T ss_dssp EEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES----------CEEEEESS-EEEE
T ss_pred eEEEEEEEEeccCCcccccccccccccccccccccccCcccccCCcCCEEEECCccC----------CeEEecCC-eEEE
Confidence 99999999999743210 00 00 00 111 125689999999975 78999999 9999
Q ss_pred EEEecCCCceEEEEEcCc-------eEEEEEecCccc-ceeEee------EEEeCCCceEEEEEEecCCCCCcceEEEec
Q 040938 140 RMINAALNDELFFSIANH-------TLTVVETDAVYV-KPIKTK------VVLITPGQTTNVLLKAKHKSPNASFLIAAR 205 (487)
Q Consensus 140 R~iN~~~~~~~~~~i~~h-------~~~via~DG~~v-~P~~~~------~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~ 205 (487)
||||+|+.+.+.|+|++| +|+|||+||+++ +|+.++ +|.|+|||||||+|++++.+ |.+|+|+..
T Consensus 277 RliNas~~r~~~l~i~~h~g~~~~~~~~vIa~DG~~l~~P~~~~~~~~~~~l~l~pgeR~dvlVd~~~~~-g~~~~L~~~ 355 (612)
T 2g23_A 277 RLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAAPAERFDLLVDFRALG-GRRLRLVDK 355 (612)
T ss_dssp EEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEECTTCEEEEEEECTTCT-TCEEEEEEC
T ss_pred EEEecCCCeEEEEEEcCCCCccCCCcEEEEEeCCeEccCCEEecccCcccEEEECCcCeEEEEEECCCCC-CCEEEEEeC
Confidence 999999999999999999 899999999999 699999 99999999999999999865 467999876
Q ss_pred cCCCCCCCC---CCcceEEEEEEecCCCCCCCCCCCCCCC-CCCC-CCCchhhhhhhhhhhccccCCCCCCCC-CCcccE
Q 040938 206 PYATGPASF---DNTTTAGVLEYEQPNNANKNKKLPLLKP-ALPK-FNDTNFAMQFSKKIRSLATAKFPAKVP-RKVDRL 279 (487)
Q Consensus 206 ~~~~~~~~~---~~~~~~ail~y~~~~~~~~~~~~~~~~p-~~p~-~~~~~~~~~~~~~~~~~~~~~~p~~~p-~~~d~~ 279 (487)
......+.. +......++++........ ....+ | .+.. ...... ......+.....+ +.... ....+.
T Consensus 356 ~~~~~~g~~~~~~~~~~~~vm~f~V~~~~~~--~~~~~-P~~L~~~~~~l~~--~~~~~~r~~~~~~-~~~~~~~~~~~~ 429 (612)
T 2g23_A 356 GPGAPAGTPDPLGGVRYPEVMEFRVRETCEE--DSFAL-PEVLSGSFRRMSH--DIPHGHRLIVLTP-PGTKGSGGHPEI 429 (612)
T ss_dssp CTTSCTTSCBGGGTBSCCEEEEEEEECCSCC--CCCCC-CSSCCSSCCCCCT--TSCCEEEEEEECC-TTCTTSTTCCCE
T ss_pred CccCCCCccccccCccccceEEEEEccCCCC--CCCCC-ChhhccccccCCc--ccccceeEEeecc-ccccccccccce
Confidence 421111100 0111123555544321111 01111 1 0100 000000 0000000000000 00000 000001
Q ss_pred EEEEeccccc--CCCCCCc--ccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCC
Q 040938 280 FFFTVGLGLS--PCPQNQT--CQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSN 355 (487)
Q Consensus 280 ~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 355 (487)
+.+....... ..+.... ....+|....|++||+.|.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNG~~~~---------------------------------------- 469 (612)
T 2g23_A 430 WEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTAATFN---------------------------------------- 469 (612)
T ss_dssp EEEEEEC-----CCSCTTEEEEECTTSCEEEEEEEECSTT----------------------------------------
T ss_pred eeccccccccccccccccceeeeccCCceeEEEECCccCC----------------------------------------
Confidence 1111000000 0000000 0001222334566665542
Q ss_pred cccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCC---CCCCCC------------CCCCCCCC
Q 040938 356 IMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGN---FDPSKD------------PAKFNLVD 420 (487)
Q Consensus 356 ~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~---~~~~~~------------~~~~n~~~ 420 (487)
....+.++.|++|+|+|+|.+ .+.|||||||+.|+|++++.+. |+.... ...++..+
T Consensus 470 -----~~~~~~v~~G~~v~w~l~N~~---~~~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~e 541 (612)
T 2g23_A 470 -----DGLGFTIGEGTHEQWTFLNLS---PILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNE 541 (612)
T ss_dssp -----SCCCEEEETTCEEEEEEEECS---SSCEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTS
T ss_pred -----CCCceEecCCCEEEEEEEeCC---CCCCCeEEcCceEEEecccCcccccccccccCcccccccccccccCCCccc
Confidence 122467889999999999975 5899999999999999985332 111100 02344556
Q ss_pred CCccceEEecCCcEEEEEEEcC-CCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 421 PAERNTVGVPSGGWVAIRFLAD-NPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 421 p~~rDtv~v~~~~~~~irf~~d-npG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
+.|||||.|+||++++|+|+++ |||.|||||||++|+|.|||+.|+|.+.+
T Consensus 542 ~~~kDTv~v~Pg~~~~i~~~~~~~pG~w~~HCHil~Hed~GMm~~f~V~p~~ 593 (612)
T 2g23_A 542 LGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPE 593 (612)
T ss_dssp SSCBSEEEECSSEEEEEEEECCSCCEEEEEEESSHHHHTTTCEEEEEEECHH
T ss_pred ccccCeEEECCCcEEEEEEEeCCCCccEEEEeCchhHhhcCCceEEEECchh
Confidence 7899999999999999999999 99999999999999999999999997653
No 17
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=100.00 E-value=1.4e-65 Score=533.20 Aligned_cols=367 Identities=21% Similarity=0.249 Sum_probs=252.3
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCCCCC--C
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYPFPQ--P 73 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~ 73 (487)
||+++++ ++||+| ||+|+||++|+|+|++.+++||||||||.++ |. +||+|+|||+++.+..++++. .
T Consensus 75 HG~~~~~--~~DG~p---~~~i~PG~~~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~~~~~~lp~~y~ 149 (488)
T 3od3_A 75 HGLEVPG--EVDGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWG 149 (488)
T ss_dssp ETCCCCH--HHHCCT---TCCBCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTCCEEEEEECHHHHTTCCCCCBT
T ss_pred cccccCc--ccCCCC---cCcCcCCCeEEEEEecCCCceeEEEEecCCCcchhhhhccceeEEEEcCccccccCCcccCC
Confidence 8999985 599997 9999999999999998666899999999854 44 899999999998765544443 2
Q ss_pred CcceeEEeeeccccChHHHHHHH-hhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEE
Q 040938 74 FKEVPMIFGEWWKADTEKIINQA-LQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFF 152 (487)
Q Consensus 74 d~e~~l~l~d~~~~~~~~~~~~~-~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~ 152 (487)
.+|++|+|+||+++...++.... .........+|.++|||+.. |.+.+ +|++|||||||+|+.+.+.|
T Consensus 150 ~~d~~lvl~D~~~~~~g~~~~~~~~~~~~~g~~gd~~lvNG~~~----------p~~~v-~g~~~RlRliNas~~~~~~l 218 (488)
T 3od3_A 150 IDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIY----------PQHAA-PRGWLRLRLLNGCNARSLNF 218 (488)
T ss_dssp TTEEEEEEEEECBCTTSSBCCCCSHHHHHHCCCCSEEEETTBSS----------CEEEE-EEEEEEEEEEECCSSCCEEE
T ss_pred ccceeEEEEEeeecCCCceeccccccccccCCCCCEEEEcCCcC----------ccEec-CCCEEEEEEEccCCCceeee
Confidence 46999999999986543221000 00000124679999999974 56766 56899999999999999999
Q ss_pred EE-cCceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC---CCCCcceEEEEEEec
Q 040938 153 SI-ANHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA---SFDNTTTAGVLEYEQ 227 (487)
Q Consensus 153 ~i-~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~---~~~~~~~~ail~y~~ 227 (487)
+| +||+|+|||+||+++ +|+.++.|.|+|||||||+|++++. +.|.|++........ .+.. ...+++...
T Consensus 219 ~i~dg~~~~vIa~DG~~l~~P~~~~~l~l~pGeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~--~~~~~~~~~ 293 (488)
T 3od3_A 219 ATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDN---KPFDLVTLPVSQMGMAIAPFDK--PHPVMRIQP 293 (488)
T ss_dssp EETTCCCEEEEEETTEEEEEEEEESCEEECTTCEEEEEEEECTT---CCEEEEECCCSSTTTTSTTTTS--CEEEEEEEE
T ss_pred eecCCCeEEEEEeCCCcccCccEeceEEECCCCEEEEEEEeCCC---ceEEEEEeccCCCCcccccccC--ccceeEecc
Confidence 99 699999999999987 8999999999999999999999974 789998865432111 1221 222333322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEeccc----------------ccCC
Q 040938 228 PNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLG----------------LSPC 291 (487)
Q Consensus 228 ~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~----------------~~~~ 291 (487)
.... . ...+ |. .|..+. ..+ ......++++.+.+... ....
T Consensus 294 ~~~~-~---~~~~-P~---------------~L~~~~--~~~-~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (488)
T 3od3_A 294 IAIS-A---SGAL-PD---------------TLSSLP--ALP-SLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAG 350 (488)
T ss_dssp EEEE-C---CCCC-CS---------------CCCCCC--CCC-CCTTCCEEEEEEEECHHHHHHHHHHHHHHHGGGGGTT
T ss_pred cccC-C---CCCC-Cc---------------ccccCC--CCc-ccccccceEEEEEeccccccccccccccccccccccc
Confidence 1100 0 0111 10 000000 000 01112345555543210 0000
Q ss_pred C---------CCCcc-cCCCCCce----eeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcc
Q 040938 292 P---------QNQTC-QGPNNTML----AASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIM 357 (487)
Q Consensus 292 ~---------~~~~~-~~~~~~~~----~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 357 (487)
. ....+ ....|..+ .|+|||++|...
T Consensus 351 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ING~~~~~~---------------------------------------- 390 (488)
T 3od3_A 351 MDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMN---------------------------------------- 390 (488)
T ss_dssp SCHHHHCCCSCCCCCCCSCCCGGGCGGGCEEETTBCCCTT----------------------------------------
T ss_pred ccccccccccccCccccccccccccccceeeECCeeCCCC----------------------------------------
Confidence 0 00000 00001111 378998877311
Q ss_pred cCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEE
Q 040938 358 VSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAI 437 (487)
Q Consensus 358 ~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i 437 (487)
...+.++.|++|+|.|.|.+. .+.|||||||++|+|++++.... ...++.|||||.|+ |++++|
T Consensus 391 ----~~~~~~~~G~~e~w~l~N~~~--~~~Hp~HlHg~~F~Vl~~~g~~~---------~~~~~~~kDTV~v~-g~~~~i 454 (488)
T 3od3_A 391 ----KPMFAAAKGQYERWVISGVGD--MMLHPFHIHGTQFRILSENGKPP---------AAHRAGWKDTVKVE-GNVSEV 454 (488)
T ss_dssp ----CCSEECCBSSCEEEEEECTTC--CCCEEEEETTCCBEEEEBTTBCC---------CGGGSSSBSEEEES-SSEEEE
T ss_pred ----CCceEcCCCCEEEEEEEeCCC--CCCccEEEcCceEEEeccCCCcc---------ccccCCceeEEEeC-CCEEEE
Confidence 112567889999999999752 47899999999999999863221 12245799999999 999999
Q ss_pred EEEcC----CCeeEEEeecchhhhhccceEEEEE
Q 040938 438 RFLAD----NPGAWFMHCHLEVHTSWGLKMAWIV 467 (487)
Q Consensus 438 rf~~d----npG~w~~HCHi~~H~~~GM~~~~~V 467 (487)
+|++| +||.||||||+++|+|.|||++|.|
T Consensus 455 ~~~f~~~~~~~G~~m~HCH~l~Hed~GMm~~f~V 488 (488)
T 3od3_A 455 LVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 488 (488)
T ss_dssp EECBCSCCCGGGCEEEEESSHHHHHTTCEEEEEC
T ss_pred EEEeccCCCCCCCEEEeCCchHHHhcCCcEEEEC
Confidence 99974 5789999999999999999999986
No 18
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=1.5e-44 Score=393.92 Aligned_cols=189 Identities=15% Similarity=0.160 Sum_probs=139.7
Q ss_pred CccccC----CCCCCCCCCC--cccccCCCCCeEEEEEEeCC---------Cccceeecccccc--cc-ccceeeEEEeC
Q 040938 1 HGVRQL----RSGWADGPAY--ITQCPIQTGQSYVYNFTVTG---------QRGTLFWHAHISW--LR-ATLYGPIVILP 62 (487)
Q Consensus 1 HGl~~~----~~~~~DGv~~--vtq~~I~PG~~~~Y~f~~~~---------~~Gt~wYH~H~~~--~~-~Gl~G~liV~~ 62 (487)
|||+++ |++++||+++ +|||+|+||++|+|+|++++ ++||||||||.+. |. +||+|+|||++
T Consensus 102 HGl~~~~~~DG~p~~Dg~~~~~vtq~~I~PG~s~tY~f~v~~~~gP~~~d~~~GT~wYHsH~~~~~q~~~GL~G~lIV~~ 181 (742)
T 2r7e_A 102 VGVSYWKASEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCR 181 (742)
T ss_dssp SSSCCCSSSSCCCSSCSCCSSSSSSSSCCTTCEECCEEEECGGGSCCSSSCSSCCEEECCCSCSHHHHHHHCCEEEEECS
T ss_pred cCcccCccccCCccCCCCcccccccCcCCCCCeEEEEEEeccccCCCcCCCCcEEEEEccCCChHHHhhCCcEEEEEEec
Confidence 999986 3444455442 99999999999999999853 5799999999987 44 79999999999
Q ss_pred CCCCCCCCCCCCcceeEEeee------ccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCE
Q 040938 63 KRHASYPFPQPFKEVPMIFGE------WWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKT 136 (487)
Q Consensus 63 ~~~~~~~~~~~d~e~~l~l~d------~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~ 136 (487)
+.....+.....+|++|++++ |+++......... .........+.++|||+.. | ..+.++|++|++
T Consensus 182 ~~~~~~~~~~~~~e~~l~~~~~de~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~ING~~~----~---~~~~l~v~~Ge~ 253 (742)
T 2r7e_A 182 EGSLAKEKTQTLHKFILLFAVFDEGKSWHSETKNSLMQDR-DAASARAWPKMHTVNGYVN----R---SLPGLIGCHRKS 253 (742)
T ss_dssp SSCTTTTTTTCCCEECCCEECCCCSSSSCCCCCC--------CCSCCCCCCCCEETTBCT----B---CCCCCEECSSSC
T ss_pred CcccCcccCceeeEEEEEeecccCCccccccccccccccC-CCccccccCceEEECCccC----C---CCcceEEcCCCE
Confidence 765322211123888888754 5554332111110 1111122356789999963 2 246799999999
Q ss_pred EEEEEEecCCCc-eEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCC
Q 040938 137 YLLRMINAALND-ELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYA 208 (487)
Q Consensus 137 ~rlR~iN~~~~~-~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~ 208 (487)
|||||+|+|+.. .+.|+|+||.|+|++. .+|++.|.|||+++|+++++++ |.|.+.++...
T Consensus 254 vrlrliN~g~~~~~h~~hlhGh~f~Vvg~--------~~Dtv~v~Pg~~~~v~~~~~~p---G~w~~hCH~~~ 315 (742)
T 2r7e_A 254 VYWHVIGMGTTPEVHSIFLEGHTFLVRNH--------RQASLEISPITFLTAQTLLMDL---GQFLLFCHISS 315 (742)
T ss_dssp EEEECCCCCSSSCCCCCCCTTCCCEETTE--------ECCSCCCCTTCCCEEEECCCSC---SEECCCCCSSS
T ss_pred EEEEEEeCCCCCcceEEEECCCEEEEEeE--------ecceEEeCCCcEEEEEEEeCCC---eeEEEEeCChh
Confidence 999999999865 6899999999999853 4788899999999999999987 89999888643
No 19
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=1.4e-42 Score=393.10 Aligned_cols=204 Identities=15% Similarity=0.229 Sum_probs=159.2
Q ss_pred CccccC----CCCCCCCCCC--cccccCCCCCeEEEEEEeCCC---------ccceeecccccccc---ccceeeEEEeC
Q 040938 1 HGVRQL----RSGWADGPAY--ITQCPIQTGQSYVYNFTVTGQ---------RGTLFWHAHISWLR---ATLYGPIVILP 62 (487)
Q Consensus 1 HGl~~~----~~~~~DGv~~--vtq~~I~PG~~~~Y~f~~~~~---------~Gt~wYH~H~~~~~---~Gl~G~liV~~ 62 (487)
|||+++ |.+|+||++| +|||+|+||++|+|+|+++++ +||||||||.+.+. +||+|+|||++
T Consensus 122 HGl~~~~~~DG~~~~dg~~g~~~t~~~I~PG~t~tY~f~~~~~~gp~~~d~~aGT~wYHsH~~~~~qv~~GL~G~lIV~~ 201 (1065)
T 2j5w_A 122 HGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICK 201 (1065)
T ss_dssp SSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTSCSEEEEEEECCSSHHHHHHHTCEEEEEEEC
T ss_pred CCccCCcccCCcccCCCCCcccccccccCCCCEEEEEEEeccccCCccCCCCceEEEEEeccCchhHhhCccEEEEEEec
Confidence 999997 6689999999 899999999999999998654 59999999999864 89999999999
Q ss_pred CCCCCCCCC-CCCcceeEEee------eccccChHHHHHHHhhcCCC-------CCCCCeEEEcCcCCCCCCCCCCceee
Q 040938 63 KRHASYPFP-QPFKEVPMIFG------EWWKADTEKIINQALQTGAA-------PNISDAFTINGLPGPLYNCSAKDTFK 128 (487)
Q Consensus 63 ~~~~~~~~~-~~d~e~~l~l~------d~~~~~~~~~~~~~~~~g~~-------~~~~d~~lvNG~~~~~~~~~~~~~~~ 128 (487)
+....+|.+ .+|+|++|+|+ ||++.+....+. ...+.. ...++.++|||+.. | ..+.
T Consensus 202 ~~~~~~p~~~~~d~e~~l~l~d~d~~~~w~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~iNG~~~----~---~~~~ 272 (1065)
T 2j5w_A 202 KDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYC--SEPEKVDKDNEDFQQSNRMYSVNGYTF----G---SLSG 272 (1065)
T ss_dssp TTCBSSSSBTTCCEEEEEEEEEEEGGGSTTHHHHHHHHC--SCGGGCCTTCHHHHHHTEEEEETTEET----T---CCCC
T ss_pred CcccCCCccCCCccceEEEeeeecCCccccccchhhhhh--cCccccccccccccccCcEEEECCccC----C---CCcc
Confidence 875444332 35889999999 566643221110 001100 00235789999973 2 2478
Q ss_pred EEEeCCCEEEEEEEecCCC-ceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 129 LKVKPGKTYLLRMINAALN-DELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 129 ~~v~~G~~~rlR~iN~~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
++|++|++|||||||+|.. ..+.|+|+||+|+ ++|+.+|+|.|+||||+||+|+++++ |.|+|+++..
T Consensus 273 l~v~~Ge~vRlRliNag~~~~~~~~~i~Gh~f~--------v~p~~~dtv~I~pGer~dVlv~~~~p---G~y~i~~h~~ 341 (1065)
T 2j5w_A 273 LSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT--------NKNYRIDTINLFPATLFDAYMVAQNP---GEWMLSCQNL 341 (1065)
T ss_dssp CEEETTCEEEEEEEECSSTTCCEEEEETTCCEE--------ETTEEESEEEECBTCEEEEEEECCSC---EEEEEEECSH
T ss_pred eEECCCCEEEEEEEcCCcccceeEEEEcCCEEE--------ECCeeecEEEECCCcEEEEEEEeCCC---eeEEEEecCc
Confidence 9999999999999999986 6899999999999 36789999999999999999999985 9999999864
Q ss_pred CCCCCCCCCcceEEEEEEecCC
Q 040938 208 ATGPASFDNTTTAGVLEYEQPN 229 (487)
Q Consensus 208 ~~~~~~~~~~~~~ail~y~~~~ 229 (487)
.-. .....+.+++.+..
T Consensus 342 ~h~-----~~Gm~~~~~V~~~~ 358 (1065)
T 2j5w_A 342 NHL-----KAGLQAFFQVQECN 358 (1065)
T ss_dssp HHH-----HTTCEEEEEEECSC
T ss_pred chh-----hCCCEEEEEEecCC
Confidence 321 12356788887643
No 20
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=3.8e-41 Score=350.70 Aligned_cols=340 Identities=19% Similarity=0.134 Sum_probs=214.1
Q ss_pred CCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCC-----CCCCcceeEEeeecc
Q 040938 12 DGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPF-----PQPFKEVPMIFGEWW 85 (487)
Q Consensus 12 DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~-----~~~d~e~~l~l~d~~ 85 (487)
+|....+||+|.||++++|+|++ .++||||||||..+++ +||+|.|+|+++....+.. .....+++..+ |+.
T Consensus 82 ~g~~~~~~~~i~pG~~~~~~f~~-~~~Gt~~y~~~~~~h~~~Gm~G~i~V~~~~~~~~~~~~~~~~~~~~~~p~~~-d~~ 159 (447)
T 2dv6_A 82 DQYAARSAIVNGKNASSTFSFVA-SKVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPADLPGPI-GPR 159 (447)
T ss_dssp TTTTEECCCBCSTTBEEEEEEEC-CSCEEEEEECCSTTHHHHTCEEEEEEESSCCCCCCCSSBCCBCCTTCSCCCC-CSC
T ss_pred ccCCcccceecCCCCeEEEEEEc-CCCEEEEEEeCCCChhhCCCEEEEEEeCCccccCCCcchhhccChhhcCCcc-ccC
Confidence 56666789999999999999997 6799999999998877 7999999999876432210 00001111111 110
Q ss_pred ccChHHHH------HHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCC-CceEEEEEcCce
Q 040938 86 KADTEKII------NQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAAL-NDELFFSIANHT 158 (487)
Q Consensus 86 ~~~~~~~~------~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~-~~~~~~~i~~h~ 158 (487)
......+. ......| ...+.+++||+.. .|+|+|++|++|||||+|.+. ...+.++++|.
T Consensus 160 ~~~~~~~~l~~~~~~~~~~~g---~~~~~~~~NG~~p---------gp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~- 226 (447)
T 2dv6_A 160 QAKTVRIDLETVEVKGQLDDN---TTYTYWTFNGKVP---------GPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGA- 226 (447)
T ss_dssp CCCEEEEEEEEEEEEEEEETT---EEEEEEEETTBBS---------CCCEEEETTCEEEEEEEECTTCSSCBCCEETTC-
T ss_pred CCcEEEEEEEEEEEEEeccCC---ceeEEEEECCccC---------CCeEEecCCCEEEEEEEeCCCCceeEEEeeccc-
Confidence 00000000 0000011 1246789999851 378999999999999999985 34566666663
Q ss_pred EEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCC
Q 040938 159 LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLP 238 (487)
Q Consensus 159 ~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~ 238 (487)
++.||.+ +.+.|.||||++++++++++ |.||++++...... .......+.|.+....
T Consensus 227 ---~~~DG~~------~~~~i~pG~~~~~~~~~~~~---G~~~yh~h~~~~~~--~~~~Gl~g~l~v~~~~--------- 283 (447)
T 2dv6_A 227 ---TGPGGAA------AFTQTDPGEETVVTFKALIP---GIYVYHCATPSVPT--HITNGMYGLLLVEPEG--------- 283 (447)
T ss_dssp ---CSGGGGG------GGCCBCTTCEEEEEEECCSC---EEEEEECCSSSHHH--HHHTTCEEEEEEECTT---------
T ss_pred ---cCCCCCC------ccEEeCCCCEEEEEEECCCC---eEEEEEeCCCChHH--HHhCCCEEEEEEeCCC---------
Confidence 3689974 22459999999999999875 99999997421000 0011345677775431
Q ss_pred CCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCC
Q 040938 239 LLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPN 318 (487)
Q Consensus 239 ~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~ 318 (487)
.+ | .. +.. +...+....... .. ...... .+..... . ......|.+||+.+...
T Consensus 284 ~~-P---~~-d~~----~~~~~~~~~~~~---~~--~~~g~~--~~~~~~~--------~--~~~~~~~~iNG~~~~~~- 336 (447)
T 2dv6_A 284 GL-P---QV-DRE----FYVMQGEIYTVK---SF--GTSGEQ--EMDYEKL--------I--NEKPEYFLFNGSVGSLT- 336 (447)
T ss_dssp CS-C---CC-SEE----EEEEEEEECBSS---CT--TCCEEC--CBBHHHH--------H--TTCCSEEEETTSTTCCC-
T ss_pred CC-C---CC-Cee----EEEEecccccCC---cc--cccccc--cCChHHh--------h--ccCCCEEEECCcccCCC-
Confidence 01 1 11 000 000000000000 00 000000 0000000 0 00112467777654110
Q ss_pred hhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceE
Q 040938 319 IALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFF 398 (487)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~ 398 (487)
...++.++.|++++|+|+|.+. ...||||||||+|+
T Consensus 337 ------------------------------------------~~~~~~v~~g~~vrlrliN~~~--~~~h~~hlhGh~f~ 372 (447)
T 2dv6_A 337 ------------------------------------------RSHPLYASVGETVRIFFGVGGP--NFTSSFHVIGEIFD 372 (447)
T ss_dssp ------------------------------------------CCCCEEECTTCEEEEEEEEEES--SCCEEEEEETCCEE
T ss_pred ------------------------------------------CCcceEECCCCEEEEEEEeCCC--CceEeEEEcCcEEE
Confidence 0135688899999999999763 47899999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCC-ccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 399 VVGQGFGNFDPSKDPAKFNLVDPA-ERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 399 Vl~~g~g~~~~~~~~~~~n~~~p~-~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
||+.+.+. +..|. +|||+.|++|++++|+|++++||.|+||||+++|++.||+++|.|+...
T Consensus 373 vv~~dG~~-----------~~~p~~~~dtv~l~pg~r~~i~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 373 HVYSLGSV-----------VSPPLIGVQTVSVPPGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EECGGGCS-----------SSCCEEEESEEEECTTEEEEEEEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEEcCCcc-----------cCCCcccccEEEECCCcEEEEEEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 99985321 12344 7999999999999999999999999999999999999999999997665
No 21
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=2.4e-41 Score=383.14 Aligned_cols=375 Identities=13% Similarity=0.129 Sum_probs=232.5
Q ss_pred CccccCC-CCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeCCCCCCCCCCCCCccee
Q 040938 1 HGVRQLR-SGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILPKRHASYPFPQPFKEVP 78 (487)
Q Consensus 1 HGl~~~~-~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~ 78 (487)
|||+|.+ ++|+||++.+| |+|.||.+|+|+|++ +++||||||||...++ +||+|.|+|++......++..++.|++
T Consensus 656 Hgl~~~g~t~~~dG~~~~t-~~i~pg~~~t~~~~~-~~~Gt~~~h~h~~~~~~~Gm~g~~~V~~~~~~~~~~~~yd~e~~ 733 (1065)
T 2j5w_A 656 HGIYFSGNTYLWRGERRDT-ANLFPQTSLTLHMWP-DTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERT 733 (1065)
T ss_dssp EEEEETTCCEEETTEEESE-EEECTTCEEEEEECC-CSCEEEEEEECSHHHHHTTCEEEEEEECCSCCCSCCCCCSEEEE
T ss_pred EeeEEeCCceeecCeecce-EeecCCceEEEEEec-CCCeEEEEecCCCcccCCCcEEEEEEcCCccccCCccCCCcceE
Confidence 8999999 99999999999 999999999999997 7999999999999987 899999999987654555556788999
Q ss_pred EEe----eeccccChHHHHHHHh-hcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEE
Q 040938 79 MIF----GEWWKADTEKIINQAL-QTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFS 153 (487)
Q Consensus 79 l~l----~d~~~~~~~~~~~~~~-~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~ 153 (487)
++| +||++.....+..... ..+.. +..+++|+... .+ |++||+ ...+.
T Consensus 734 ~~iaa~~~dW~~~~~~~~~~~~~~~~~~~---p~~~~~n~~~~-----------~i----G~tY~k---------~~y~~ 786 (1065)
T 2j5w_A 734 YYIAAVEVEWDYSPQREWEKELHHLQEQN---VSNAFLDKGEF-----------YI----GSKYKK---------VVYRQ 786 (1065)
T ss_dssp EEEEEEEEEEESCSCCHHHHHHHHHHTCC---CCCTTTCCTTT-----------CC----CSEEEE---------EEEEE
T ss_pred EEEeeeeccccCCcchhhhhhccCCCccC---ccceeecCCCc-----------cc----cceEee---------eEEEE
Confidence 999 8999987765433322 12322 45667787542 12 899998 34578
Q ss_pred EcCceEEE----------EEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCC-----CCCCcc
Q 040938 154 IANHTLTV----------VETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPA-----SFDNTT 218 (487)
Q Consensus 154 i~~h~~~v----------ia~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~-----~~~~~~ 218 (487)
+.+|+|++ +++|| ..|.+.+|||+.|.++-... ..|.|..+....... ......
T Consensus 787 ~~d~tft~~~~r~~~~~~v~~pG--------P~I~v~~Gd~v~v~l~N~~~---~~~sih~HGl~~~~~~~~~i~PG~~~ 855 (1065)
T 2j5w_A 787 YTDSTFRVPVERKAEEEHLGILG--------PQLHADVGDKVKIIFKNMAT---RPYSIHAHGVQTESSTVTPTLPGETL 855 (1065)
T ss_dssp ESSTTCCSBCCCCGGGGGGTTSC--------CCEEEETTEEEEEEEEECSS---SCBCCEESSCBCSCSCCCCBCTTCEE
T ss_pred EcCCcceecccCCccccccCCCC--------CEEEEecCCEEEEEEEeCCC---CCceEeeccccccCCCCceeCCCCeE
Confidence 89999998 66666 47999999999999997644 678887665321110 011111
Q ss_pred eEEEEEEecCCCCCCCCCCC--CCCCCCCCCCCchhhhhhhhhhhcc--ccCCCCC-CCCCCcccEEEEEec-ccccCCC
Q 040938 219 TAGVLEYEQPNNANKNKKLP--LLKPALPKFNDTNFAMQFSKKIRSL--ATAKFPA-KVPRKVDRLFFFTVG-LGLSPCP 292 (487)
Q Consensus 219 ~~ail~y~~~~~~~~~~~~~--~~~p~~p~~~~~~~~~~~~~~~~~~--~~~~~p~-~~p~~~d~~~~~~~~-~~~~~~~ 292 (487)
.+..+.++......+ ..+ .. .-.+.. .....+...+..+ ...+... ..+...+..+.+.+. +..
T Consensus 856 ty~~~~~~~~gp~~~--~~~~gt~-wYhsh~---~~~~q~~~GL~G~liV~~~~~l~~~~~~~d~D~~l~~~~~d~---- 925 (1065)
T 2j5w_A 856 TYVWKIPERSGAGTE--DSACIPW-AYYSTV---DQVKDLYSGLIGPLIVCRRPYLKVFNPRRKLEFALLFLVFDE---- 925 (1065)
T ss_dssp EEEEECCGGGSCCTT--SCSEEEE-EEECCT---THHHHHHTTCEEEEEEECCC-----CCCCEEEEEEEEEEEEG----
T ss_pred EEEEEecCccCCccc--cCCceEE-EEecCC---ChHHhhhccccceeEecCcccccccCCCcceEEEEEEEeecC----
Confidence 222222211000000 000 00 000110 1111111112111 0000000 001112333333221 100
Q ss_pred CCCcccCCCCCceeeeecceeccC-C-ChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCCCcccCCCceEEEecCC
Q 040938 293 QNQTCQGPNNTMLAASINNVSFAQ-P-NIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPSNIMVSSGTRAVALPFN 370 (487)
Q Consensus 293 ~~~~~~~~~~~~~~~~iN~~~~~~-p-~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g 370 (487)
++. +....|+.+|.. | ..+++...+.. .+..+..++. .-.....+.++.|
T Consensus 926 --------~~~-~y~~~n~~~~~~~P~~v~~~~~~~~~-------------~~~~~~iNG~------~~~~~~~~~v~~G 977 (1065)
T 2j5w_A 926 --------NES-WYLDDNIKTYSDHPEKVNKDDEEFIE-------------SNKMHAINGR------MFGNLQGLTMHVG 977 (1065)
T ss_dssp --------GGS-TTHHHHHHHHCSCGGGCCTTCHHHHH-------------HTEEEEETTB------CTTCCCCCEEETT
T ss_pred --------Ccc-eeeccCcccccCCccccCcchhhhhc-------------cCceEEECCc------cCCCCccEEeCCC
Confidence 000 001123333321 1 11111110000 0000001110 0012345789999
Q ss_pred CEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCCeeEEEe
Q 040938 371 ASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGAWFMH 450 (487)
Q Consensus 371 ~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~H 450 (487)
++|+|+|.|.+. ..+.||||||||.|+|++++ |.||||+.|+||++++|+|++||||.|+||
T Consensus 978 ~~vr~~l~N~g~-~~~~HpfHlHG~~F~vv~~~-----------------p~~~DTv~v~pg~~~~v~~~ad~pG~w~~H 1039 (1065)
T 2j5w_A 978 DEVNWYLMGMGN-EIDLHTVHFHGHSFQYKHRG-----------------VYSSDVFDIFPGTYQTLEMFPRTPGIWLLH 1039 (1065)
T ss_dssp CEEEEEEEECCS-TTCCEEEEESSCCEEETTTT-----------------CEEESEEEECTTCEEEEEECCCSCEEEEEE
T ss_pred CEEEEEEEeCCC-CCcceeEEEcccEEEEEecC-----------------CceeeEEEECCCCeEEEEEECCCCeeEEEE
Confidence 999999999752 34789999999999999753 569999999999999999999999999999
Q ss_pred ecchhhhhccceEEEEEeCCC
Q 040938 451 CHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 451 CHi~~H~~~GM~~~~~V~~~~ 471 (487)
||+++|++.|||++|.|.+.+
T Consensus 1040 CH~~~H~~~GM~~~~~V~~~~ 1060 (1065)
T 2j5w_A 1040 CHVTDHIHAGMETTYTVLQNE 1060 (1065)
T ss_dssp ECCHHHHHTTCEEEEEEECCC
T ss_pred eCCHHHHhcCCcEEEEEecCc
Confidence 999999999999999998765
No 22
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=100.00 E-value=4.9e-39 Score=318.68 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=170.5
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccccc----ccceeeEEEeCCCCCCCCCCCCCcc
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLR----ATLYGPIVILPKRHASYPFPQPFKE 76 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~----~Gl~G~liV~~~~~~~~~~~~~d~e 76 (487)
||+++.+++++||+|++|||+|+||++|+|+|++ +++||||||||.+.+. +||+|+|||+++....++. .+|+|
T Consensus 61 HG~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~~~~~~-~~d~e 138 (318)
T 3g5w_A 61 HGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKA-EPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIEK-TVTKD 138 (318)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHHHHSCCEEEEEEECSSCCHHHH-TCCEE
T ss_pred cCcCCCCCcccCCCcccccccCCCCCEEEEEEEc-CCCEEEEEEccCChhhhhccCCCEEEEEEcCCCcccccc-cccce
Confidence 8999999889999999999999999999999998 7999999999997653 7999999999876422111 46899
Q ss_pred eeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcC
Q 040938 77 VPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIAN 156 (487)
Q Consensus 77 ~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~ 156 (487)
++|+|+||+++..... ...+.....++.++|||+..+. ...++|++|++|||||+|++.. .+.|+|+|
T Consensus 139 ~~l~l~dw~~~~~~~~----~~~~~~~~~~d~~~ING~~~~~-------~~~l~v~~G~~vrlrliN~~~~-~h~~hlhG 206 (318)
T 3g5w_A 139 YILMLSDWVSSWANKP----GEGGIPGDVFDYYTINAKSFPE-------TQPIRVKKGDVIRLRLIGAGDH-VHAIHTHG 206 (318)
T ss_dssp EEEEEEEECGGGTTCT----TCCCCTTCCCCEEEETTBCBTS-------SCCEEECTTCEEEEEEEECSSS-CEEEEETT
T ss_pred eEEEEEeecccccccc----ccCCCCCCcCcEEEEcCcCCCC-------CccEEeCCCCEEEEEEEeCCCc-eEEEEECC
Confidence 9999999987643210 0112222357899999997531 2459999999999999999975 68999999
Q ss_pred ceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCC-CCCcceEEEEEEecCC
Q 040938 157 HTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPAS-FDNTTTAGVLEYEQPN 229 (487)
Q Consensus 157 h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~ail~y~~~~ 229 (487)
|+|+||+.||.++ +|..+|++.|.||||+||+++++++ |.|.+.++...-.... .-.....++|+|++.+
T Consensus 207 h~f~vi~~dG~~~~~p~~~dtv~l~pger~~v~~~a~~p---G~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 207 HISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNP---GLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp SCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSC---SEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred cEEEEEecCCcccCCCccccEEEECCCCEEEEEEECCCC---eeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 9999999999998 7999999999999999999999987 9999999864322100 0112457889998753
No 23
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=100.00 E-value=3.9e-38 Score=315.47 Aligned_cols=211 Identities=28% Similarity=0.467 Sum_probs=168.1
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc--c-c-ccceeeEEEeCCCCCCCCCCCCCcc
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW--L-R-ATLYGPIVILPKRHASYPFPQPFKE 76 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~--~-~-~Gl~G~liV~~~~~~~~~~~~~d~e 76 (487)
||+++++++||||+|++|||+|+||++|+|+|++ .++||||||||... | . +||+|+|||+++.....+ ...++|
T Consensus 62 HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~-~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~~~~~~-~~~d~e 139 (339)
T 2zwn_A 62 HGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKA-DRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQPLPIE-KRVTKD 139 (339)
T ss_dssp ETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHTTTSCCEEEEEEECSSCCTTG-GGCSEE
T ss_pred CCCCcCCCcccCCCCccccCccCCCCeEEEEEEC-CCCEEEEEEecCCchhhhhcCCceEeEEecCCCccccc-ccCCce
Confidence 8999999999999999999999999999999998 79999999999876 4 3 799999999987543211 135789
Q ss_pred eeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcC
Q 040938 77 VPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIAN 156 (487)
Q Consensus 77 ~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~ 156 (487)
++|+|+||++...... ...+.....++.++|||+..+. ...++|++|++|||||+|++. ..+.|+|+|
T Consensus 140 ~~l~l~d~~~~~~~~~----~~~g~~~~~~~~~~ING~~~~~-------~~~~~v~~G~~vrlrliN~~~-~~h~~hlhG 207 (339)
T 2zwn_A 140 VIMMMSTWESAVADKY----GEGGTPMNVADYFSVNAKSFPL-------TQPLRVKKGDVVKIRFFGAGG-GIHAMHSHG 207 (339)
T ss_dssp EEEEEEEECGGGTTCT----TCCCSTTSCCCEEEETTBCTTS-------SCCEEECTTCEEEEEEEECSS-SCEEEEETT
T ss_pred EEEEeeheeccccccc----CCCCCCccccceEEEccccCCC-------cccEEECCCCEEEEEEEeCCC-ceEEEEECC
Confidence 9999999987421100 0011122256899999997531 246999999999999999995 489999999
Q ss_pred ceEEEEEecCcccc-eeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCC-CCCcceEEEEEEecC
Q 040938 157 HTLTVVETDAVYVK-PIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPAS-FDNTTTAGVLEYEQP 228 (487)
Q Consensus 157 h~~~via~DG~~v~-P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~ail~y~~~ 228 (487)
|+|+||+.||.+++ |..+|++.|.||||+||+|+++++ |.|++.+....-+... .......++|+|++.
T Consensus 208 h~f~vi~~DG~~~~~p~~~dtv~l~pg~r~~v~~~~~~p---G~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~ 278 (339)
T 2zwn_A 208 HDMLVTHKDGLPLDSPYYADTVLVSPGERYDVIIEADNP---GRFIFHDHVDTHVTAGGKHPGGPITVIEYDGV 278 (339)
T ss_dssp CCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECCSC---SEEEEEECCGGGSCBTTBSSCSSEEEEEETTS
T ss_pred cEEEEEEeCCeecCCCcEEEEEEECCCCEEEEEEEeCCC---eeEEEEEechhhcccccccCCCcEEEEEECCC
Confidence 99999999999995 899999999999999999999886 8999998864321111 112345799999765
No 24
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=100.00 E-value=1.2e-35 Score=288.88 Aligned_cols=95 Identities=21% Similarity=0.379 Sum_probs=79.1
Q ss_pred EecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC---
Q 040938 366 ALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD--- 442 (487)
Q Consensus 366 ~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d--- 442 (487)
.++.|++|+|+|+|.+ .+.|||||||+.|+|++. |.++.. ...+.+|||+.|.||++..++|+++
T Consensus 171 ~v~~G~~vri~l~N~~---~~~Hp~HlHG~~f~v~~~--G~~~~p-------~~~~~~~Dtv~v~pg~~~~~~~~~~~~~ 238 (276)
T 3kw8_A 171 EATVGDRVEIVMITHG---EYYHTFHMHGHRWADNRT--GILTGP-------DDPSRVIDNKITGPADSFGFQIIAGEGV 238 (276)
T ss_dssp EEETTCEEEEEEEEES---SCCEEEEETTCCEESSSS--SSCCST-------TCCCCEESEEEECTTCEEEEEEETTTTT
T ss_pred EEecCCEEEEEEecCC---CcceeEEEccceeEEecc--CccCCC-------cccccCCccEEeCCCceEEEEEEeccCC
Confidence 3445889999999976 379999999999999764 332211 1224699999999999999999997
Q ss_pred CCeeEEEeecchhhhhccceEEEEEeCCCC
Q 040938 443 NPGAWFMHCHLEVHTSWGLKMAWIVNDGKG 472 (487)
Q Consensus 443 npG~w~~HCHi~~H~~~GM~~~~~V~~~~~ 472 (487)
|||.|+||||+++|++.|||+.|.|.+++.
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 899999999999999999999999987753
No 25
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=100.00 E-value=1.5e-35 Score=295.31 Aligned_cols=196 Identities=19% Similarity=0.267 Sum_probs=159.2
Q ss_pred CCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc---cc-ccceeeEEEeCCCCCCCCCCCCCcceeEEeeecc
Q 040938 10 WADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW---LR-ATLYGPIVILPKRHASYPFPQPFKEVPMIFGEWW 85 (487)
Q Consensus 10 ~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~---~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~ 85 (487)
.+||++..+ .|+||++|+|+|++ +++||||||||.+. |. +||+|+|||++++. ++.+|+|++|+++||+
T Consensus 103 ~~dG~~~~~--~i~PG~~~~y~f~~-~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~~----~p~~d~e~~l~~~d~~ 175 (327)
T 1kbv_A 103 GQGGGAAAT--FTAPGRTSTFSFKA-LQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEFYIVQGDFY 175 (327)
T ss_dssp SGGGGTTTT--CBCTTEEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTC----CCCCSEEEEEEEEEEC
T ss_pred cCCCCCcce--eecCCCEEEEEEEC-CCCeEEEEEeCCCChhhhhhcceEEEEEEecCCC----CCCCceEEEEEeeeee
Confidence 489988754 59999999999998 78999999999753 44 79999999998652 3457899999999999
Q ss_pred ccChHHH-------HHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCce
Q 040938 86 KADTEKI-------INQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHT 158 (487)
Q Consensus 86 ~~~~~~~-------~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~ 158 (487)
++..... .... .+ ..++.++|||+.+++.. .+.++|++|++|||||+|+|+.+.+.|+|+||+
T Consensus 176 ~~~~~~~~g~~~~~~~~~--~~---~~~~~~~iNG~~~~~~~-----~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~ 245 (327)
T 1kbv_A 176 TKGKKGAQGLQPFDMDKA--VA---EQPEYVVFNGHVGALTG-----DNALKAKAGETVRMYVGNGGPNLVSSFHVIGEI 245 (327)
T ss_dssp BSSCTTCCEEECBCHHHH--HH---TCCSEEEETTSTTTTSG-----GGCEEEETTEEEEEEEEEEESSCCEEEEEETCC
T ss_pred ccCccccccccccChhHh--cc---CCCceEEEcCcccCCCC-----ceeEEeCCCCEEEEEEECCCCCCceeEEEeCCE
Confidence 8752100 0000 11 24689999999864422 257999999999999999999899999999999
Q ss_pred EEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCC
Q 040938 159 LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPN 229 (487)
Q Consensus 159 ~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 229 (487)
|+||+.||++++|..++++.|+||||+||+|+++++ |.|+|+++....+ ......|+|+|.+..
T Consensus 246 f~vi~~DG~~~~p~~~d~l~l~pGer~dv~v~~~~p---G~y~l~~h~~~~~----~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 246 FDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIP---GNYTLVDHSIFRA----FNKGALGQLKVEGAE 309 (327)
T ss_dssp BSEEEGGGSSCEECSBSEEEECTTEEEEEEEEECSC---EEEEEEESSTHHH----HHSSCEEEEEEESCC
T ss_pred EEEEEcCCCcCCCCceeEEEECCCCEEEEEEEeCCC---eEEEEEecccccc----ccCCcEEEEEECCCC
Confidence 999999999999999999999999999999999985 9999999864321 012468999998763
No 26
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=100.00 E-value=1.5e-33 Score=282.03 Aligned_cols=93 Identities=20% Similarity=0.348 Sum_probs=77.2
Q ss_pred ecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc---CC
Q 040938 367 LPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA---DN 443 (487)
Q Consensus 367 v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~---dn 443 (487)
++.|++|+|+|.|.+ .+.||||||||.|+|++. |.+.. ....+.|+||+.|.||++++|+|++ ++
T Consensus 213 v~~Ge~vri~l~N~g---~~~HpfHlHGh~f~v~~~--G~~~~-------p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~ 280 (343)
T 3cg8_A 213 ATVGDRVEIVMITHG---EYYHTFHMHGHRWADNRT--GILTG-------PDDPSRVIDNKITGPADSFGFQIIAGEGVG 280 (343)
T ss_dssp EETTCEEEEEEEEES---SCCEEEEETTCCEESSSS--SSCCS-------TTCCCCEESEEEECTTCEEEEEEETTTTTC
T ss_pred eCCCCEEEEEEEcCC---ccccccEecCcEEEEecc--CcccC-------CCCcccceeeEEeCCCCEEEEEEEECCCCC
Confidence 345889999999976 479999999999999743 32211 1123568999999999999999995 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
||.|+||||+++|++.|||+.|.|.+.+
T Consensus 281 pG~w~~HCHi~~H~~~GM~g~~~V~~~~ 308 (343)
T 3cg8_A 281 AGAWMYHCHVQSHSDMGMVGLFLVKKPD 308 (343)
T ss_dssp SEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred CeeEEEeCCCHHHHhccCcEEEEEecCC
Confidence 9999999999999999999999998654
No 27
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=100.00 E-value=1.3e-32 Score=269.14 Aligned_cols=174 Identities=26% Similarity=0.364 Sum_probs=148.3
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc---cc-ccceeeEEEeCCCCCCCCCCCCCcc
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW---LR-ATLYGPIVILPKRHASYPFPQPFKE 76 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~---~~-~Gl~G~liV~~~~~~~~~~~~~d~e 76 (487)
||++ .+++||+|++|||+|+||++|+|+|++ +++||||||||.+. |. +||+|+|||+++... +..|+|
T Consensus 93 HG~~---~~~~DG~p~~~~~~i~PG~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~~----~~~d~e 164 (288)
T 3gdc_A 93 HGVH---RATMDGTPGIGAGSIAPGQSFTYEFDA-TPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGR----PPADDE 164 (288)
T ss_dssp SSCC---CGGGSCCTTSTTCSBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECSSCC----CCCSEE
T ss_pred cccc---ccccCCCCCccceeECCCCEEEEEEEc-CCCccEEEEecCcchHHHHhCcCeEEEEEeCCccC----CCCcce
Confidence 8887 257999999999999999999999998 89999999999974 44 899999999988653 235799
Q ss_pred eeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCc-eEEEEEc
Q 040938 77 VPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALND-ELFFSIA 155 (487)
Q Consensus 77 ~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~-~~~~~i~ 155 (487)
++|+++||+.++ + ..++.++|||+..++ ..+.+++++|+++||||+|++... .+.|+|+
T Consensus 165 ~~l~~~d~~~~~-----------g---~~~~~~~iNG~~~~~------~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlh 224 (288)
T 3gdc_A 165 MVMVMNGYNTDG-----------G---DDNEFYSVNGLPFHF------MDFPVKVKQHELVRIHLINVLEYDPINSFHIH 224 (288)
T ss_dssp EEEEEEEECCSS-----------T---TCCSEEEETTSTTHH------HHSCEEEETTCCEEEEEEECCCSSSEEEEEET
T ss_pred EEEEEeeEecCC-----------C---CCcceEEECcccccc------cCcccccCCCCEEEEEEEeCCCCCcceeEEEc
Confidence 999999999862 1 135789999997521 124689999999999999999654 7899999
Q ss_pred CceEEEEEecCccc-ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 156 NHTLTVVETDAVYV-KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 156 ~h~~~via~DG~~v-~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
||.|+|++ +|..+ .|...|++.|.||||++|+++++++ |.|.+.++.
T Consensus 225 G~~f~v~~-~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~p---G~~~~hCH~ 272 (288)
T 3gdc_A 225 GNFFHYYP-TGTMLTPSEYTDTISQVQGQRGILELRFPYP---GKFMFHAHK 272 (288)
T ss_dssp TCCEEEEE-TTCCSSCSEEESEEEEETTCEEEEEECCCSC---EEEEEECSS
T ss_pred CCEEEEEc-CCCccCCCceeeEEEeCCCceEEEEEECCCC---EEEEEEecC
Confidence 99999998 55555 6789999999999999999999987 999999975
No 28
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.98 E-value=3.4e-32 Score=282.62 Aligned_cols=199 Identities=20% Similarity=0.257 Sum_probs=159.0
Q ss_pred CCCCCCCcccccCCCCCeEEEEEEeCCCccceeeccccc---ccc-ccceeeEEEeCCCCCCCCCCCCCcceeEEeeecc
Q 040938 10 WADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHIS---WLR-ATLYGPIVILPKRHASYPFPQPFKEVPMIFGEWW 85 (487)
Q Consensus 10 ~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~---~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~ 85 (487)
.+||++.++ +|+||++|+|+|++ +++||||||||.+ .+. +||+|+|||++++. .+.+|+|++|+++||+
T Consensus 93 ~~dG~~~~~--~i~pg~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~~----~~~~d~e~~l~l~d~~ 165 (442)
T 2zoo_A 93 GPGGGAESS--FTAPGHTSTFNFKA-LNPGLYIYHCATAPVGMHIANGMYGLILVEPKEG----LAPVDREYYLVQGDFY 165 (442)
T ss_dssp SGGGGGGGC--CBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTC----CCCCSEEEEEEEEEEC
T ss_pred CCCCCCccE--EECCCCEEEEEEEc-CCCeEEEEecCCCChHHHHhCccEEEEEEeCCCC----CCCCCceEEEEeeeee
Confidence 379988754 69999999999997 8899999999864 344 89999999997753 2356899999999999
Q ss_pred ccChHHH-----HHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEE
Q 040938 86 KADTEKI-----INQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLT 160 (487)
Q Consensus 86 ~~~~~~~-----~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~ 160 (487)
+...... .......+ ..++.++|||+..+.. ..+.|+|++|++|||||+|+|....+.|+|+||+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~---~~~~~~liNG~~~~~~-----~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~ 237 (442)
T 2zoo_A 166 TKGEFGEAGLQPFDMAKAID---EDADYVVFNGSVGSTT-----DENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFD 237 (442)
T ss_dssp BSSCTTCCEEECBCHHHHHT---TCCSEEEETTSTTTTS-----GGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBS
T ss_pred ccCcccccccccCChhHhcc---CCCCEEEECCCcCCCC-----CCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEE
Confidence 8753100 00000011 3578999999975321 125799999999999999999889999999999999
Q ss_pred EEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCC
Q 040938 161 VVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNN 230 (487)
Q Consensus 161 via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~ 230 (487)
||+.||++++|..++++.|.||||+||+|+++++ |.|+++++.+... ......++|+|.+...
T Consensus 238 vi~~DG~~~~p~~~~~~~l~pg~r~~v~v~~~~~---G~y~~~~~~~~~~----~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 238 TVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVEVP---GTFILVDHSIFRA----FNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEEGGGSSCEECSBSEEEECTTEEEEEEEECCSC---EEEEEEESSTHHH----HTTSCEEEEEEESCCC
T ss_pred EEecCCccCCCccceEEEECCCeeEEEEEEcCCC---CeEEEEecccccc----cccCceEEEEecCCCC
Confidence 9999999999999999999999999999999985 9999999764321 1235689999987653
No 29
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=99.97 E-value=7.5e-32 Score=270.05 Aligned_cols=210 Identities=20% Similarity=0.208 Sum_probs=156.4
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCCCC--C-CC
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHASYP--F-PQ 72 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~--~-~~ 72 (487)
||+++.+.+++||++.++| |+||++|+|+|++ +++||||||||.++ |. +||+|+|||+++.....+ . ..
T Consensus 89 h~~~~h~~~~~~~~~~~~~--i~pG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~ 165 (336)
T 1oe1_A 89 HNVDFHGATGALGGAKLTN--VNPGEQATLRFKA-DRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165 (336)
T ss_dssp BCCEETTSCSGGGGGGGCC--BCTTEEEEEEEEC-CSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTCCBCTTSCBCC
T ss_pred ccceECCCCCCCCCcceEE--eCCCCEEEEEEEC-CCCeEEEEecCCCCchhHHHhCCCeEEEEEecCcCCcccccCccc
Confidence 8899998888888888886 9999999999998 78999999999874 44 899999999986532111 1 14
Q ss_pred CCcceeEEeeeccccCh--HHH---------HHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEE
Q 040938 73 PFKEVPMIFGEWWKADT--EKI---------INQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRM 141 (487)
Q Consensus 73 ~d~e~~l~l~d~~~~~~--~~~---------~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~ 141 (487)
+|.|++|+++||++... ..+ ....... .....++.++|||+.+.+.+ .+.++|++|++|||
T Consensus 166 ~D~e~~l~~~D~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~liNG~~~~~~~-----~~~l~v~~GervRl-- 237 (336)
T 1oe1_A 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQV-MRTLTPSHIVFNGKVGALTG-----ANALTAKVGETVLL-- 237 (336)
T ss_dssp CSEEEEEEEEEECCCBCTTSSBCCCSSTGGGHHHHHHH-HHTTCCSEEEETTSTTTTSG-----GGCEEEETTCEEEE--
T ss_pred CCceeEeeeeeeeeccccCCceeecccccccccchhhH-hhcCCCCEEEECCeeccCCC-----CcceEcCCCCEEEE--
Confidence 68999999999988411 100 0000000 00135689999999753321 37899999997765
Q ss_pred EecCCCceEEEE-EcCceEEEEEecCccccee--EeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcc
Q 040938 142 INAALNDELFFS-IANHTLTVVETDAVYVKPI--KTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTT 218 (487)
Q Consensus 142 iN~~~~~~~~~~-i~~h~~~via~DG~~v~P~--~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 218 (487)
+|++..+.+.|+ |++|.|+|++ ||.+++|. .++++.|+||||+||+|+++++ |.|+++++..... ....
T Consensus 238 in~~~~~~~~~~~i~gh~~~Vi~-DG~~~~p~~~~~dtv~i~pGer~dvlv~~~~p---G~y~~~~h~~~~~----~~~G 309 (336)
T 1oe1_A 238 IHSQANRDTRPHLIGGHGDWVWE-TGKFANPPQRDLETWFIRGGSAGAALYTFKQP---GVYAYLNHNLIEA----FELG 309 (336)
T ss_dssp EEEESSSCBCEEETTCCEEEEET-TCCTTSCCEEEESBCCBCTTEEEEEEEECCSC---EEEEEEESSHHHH----HTTS
T ss_pred EecCCCCccceEEECCcCceEeC-CCcCcCCccccceEEEECCCCcEEEEEEcCCC---ceEEEEechhhcc----ccCC
Confidence 666666665554 5999999998 99999753 3689999999999999999986 9999999864211 0124
Q ss_pred eEEEEEEecCC
Q 040938 219 TAGVLEYEQPN 229 (487)
Q Consensus 219 ~~ail~y~~~~ 229 (487)
..|+++|.+..
T Consensus 310 ~~~~~~V~~~~ 320 (336)
T 1oe1_A 310 AAGHIKVEGKW 320 (336)
T ss_dssp CEEEEEEESCC
T ss_pred CeEEEEECCCC
Confidence 67899998753
No 30
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=99.97 E-value=3.2e-31 Score=265.08 Aligned_cols=211 Identities=16% Similarity=0.130 Sum_probs=155.7
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc-----cc-ccceeeEEEeCCCCCCCC--C-C
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW-----LR-ATLYGPIVILPKRHASYP--F-P 71 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~-----~~-~Gl~G~liV~~~~~~~~~--~-~ 71 (487)
||+++.+...+||+++++| |+||++|+|+|++ +++||||||||.++ |. +||+|+|||+++...+.+ . .
T Consensus 88 Hg~~~~~~~~~~~~~~~~~--i~PG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~ 164 (333)
T 1mzy_A 88 HNIDFHAATGALGGGGLTL--INPGEKVVLRFKA-TRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPV 164 (333)
T ss_dssp BCCEETTSCSGGGGGGGCC--BCTTEEEEEEEEC-CSCEEEEEECCCSTTHHHHHHHTTCEEEEEEECTTCCBCTTSCBC
T ss_pred ccceecCCCCCCCCCceeE--eCCCCEEEEEEEC-CCCEEEEEeecCCcccchhhhhCCCEEEEEEccCcCccccccCCC
Confidence 8999887666777788885 9999999999998 78999999999974 55 799999999976532111 1 1
Q ss_pred CCCcceeEEeeeccccC--hHH---------HHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEE
Q 040938 72 QPFKEVPMIFGEWWKAD--TEK---------IINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLR 140 (487)
Q Consensus 72 ~~d~e~~l~l~d~~~~~--~~~---------~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR 140 (487)
.+|+|++|+++||++.. ... .+....... ....++.++|||+.+++. ..+.++|++|++||||
T Consensus 165 ~~d~e~~l~l~D~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ING~~~~~~-----~~~~l~v~~Ger~Rl~ 238 (333)
T 1mzy_A 165 RYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVM-DTLIPSHIVFNGAVGALT-----GEGALKAKVGDNVLFV 238 (333)
T ss_dssp CCSEEEEEEEEEECCCBCTTSCBCCCSSHHHHHHHHHHHH-TTTCCSEEEETTSTTTTS-----GGGCEEEETTCEEEEE
T ss_pred ccchheeeeeeeeccCccccccccccccccccccchhHHh-hccCCcEEEECCcccccC-----CCcceEecCCCEEEEE
Confidence 46899999999998831 110 000000000 114578999999975321 1367999999998887
Q ss_pred EEecCCCceEEEEEcCceEEEEEecCcccc-ee-EeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcc
Q 040938 141 MINAALNDELFFSIANHTLTVVETDAVYVK-PI-KTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTT 218 (487)
Q Consensus 141 ~iN~~~~~~~~~~i~~h~~~via~DG~~v~-P~-~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 218 (487)
++|++....+. .+++|.|+||+ ||.+++ |. .++++.|.||||+||+|+++++ |.|++.++.+... ....
T Consensus 239 n~~~~~~~~~h-~i~~h~~~Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~a~~p---G~y~~~ch~~~h~----~~~G 309 (333)
T 1mzy_A 239 HSQPNRDSRPH-LIGGHGDLVWE-TGKFHNAPERDLETWFIRGGTAGAALYKFLQP---GVYAYVNHNLIEA----VHKG 309 (333)
T ss_dssp EEESSSCBCEE-EETCCEEEEET-TCCTTSCCEEEESBCCBCTTEEEEEEEECCSC---EEEEEEESSHHHH----HTTC
T ss_pred ECCCCCccccE-EECCCCeEEEe-CCcccCCCccCcceEEECCCceEEEEEEcCCC---EEEEEecChhhhH----hhCC
Confidence 77665443343 37899999999 999996 44 4899999999999999999986 9999999864321 0124
Q ss_pred eEEEEEEecCC
Q 040938 219 TAGVLEYEQPN 229 (487)
Q Consensus 219 ~~ail~y~~~~ 229 (487)
..++++|.+..
T Consensus 310 m~~~~~v~~~~ 320 (333)
T 1mzy_A 310 ATAHVLVEGEW 320 (333)
T ss_dssp CEEEEEEESCC
T ss_pred CEEEEEEcCCC
Confidence 66899998753
No 31
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.97 E-value=5.7e-31 Score=260.49 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=145.3
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeC------------CCccceeeccccccc-------cccceeeEEEe
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVT------------GQRGTLFWHAHISWL-------RATLYGPIVIL 61 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~------------~~~Gt~wYH~H~~~~-------~~Gl~G~liV~ 61 (487)
|||++.. +|||++ ++||+|+||++|+|+|++. .++||||||||..++ .+||+|+|||+
T Consensus 69 HG~~~~~--~~dG~~-~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~ 145 (313)
T 3tas_A 69 HGLDYEI--SSDGTK-QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVR 145 (313)
T ss_dssp SSSBCCG--GGSCST-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEE
T ss_pred cCCcCCc--cCCCCc-cccCCcCCCCEEEEEEEeccCCccccccccCCCceEEEEeecCcccccchhhhhccccCceEee
Confidence 8999875 599998 6999999999999999863 478999999998654 27999999999
Q ss_pred CCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEE
Q 040938 62 PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRM 141 (487)
Q Consensus 62 ~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~ 141 (487)
++.+. .+|+|++|+++||+ +||+... ..+.+.++.|++|||||
T Consensus 146 ~~~~~-----~~d~e~~l~~~d~t-------------------------~Ng~~~~-------~~~~l~v~~Ge~vr~~l 188 (313)
T 3tas_A 146 RKGDV-----LPDRTHTIVFNDMT-------------------------INNRPAH-------TGPDFEATVGDRVEFVM 188 (313)
T ss_dssp CTTCB-----CCSEEEEEEEETTE-------------------------ETTCCTT-------CCCCEEEETTCEEEEEE
T ss_pred ccccc-----cccccceeeccchh-------------------------cccCCcc-------cccccccccCCEEEEEE
Confidence 98752 35899999999984 4555431 23679999999999999
Q ss_pred EecCCCceEEEEEcCceEEEEEecCccc---ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcc
Q 040938 142 INAALNDELFFSIANHTLTVVETDAVYV---KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTT 218 (487)
Q Consensus 142 iN~~~~~~~~~~i~~h~~~via~DG~~v---~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 218 (487)
+|++. ..+.|+|+||.|+|++.||... .|..+|++.|.||||++|+|.+.+...-|.|.+.++...-. ...
T Consensus 189 iN~g~-~~hpfHlHGh~F~v~~~~~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~~HCHi~~H~-----~~G 262 (313)
T 3tas_A 189 ITHGE-YYHTFHLHGHRWADNRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQSHS-----DMG 262 (313)
T ss_dssp EEESS-CCEEEEETTCCEESSTTSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEEEEECSHHHH-----HTT
T ss_pred ecccc-cceeeeecCCeeEEEEECCccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEEEEeCChHHH-----HCC
Confidence 99995 5689999999999999999776 47889999999999999999886532128999999853211 113
Q ss_pred eEEEEEEec
Q 040938 219 TAGVLEYEQ 227 (487)
Q Consensus 219 ~~ail~y~~ 227 (487)
..+++.++.
T Consensus 263 M~~~f~V~~ 271 (313)
T 3tas_A 263 MVGLFLVKK 271 (313)
T ss_dssp CEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 446666654
No 32
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.97 E-value=5.7e-31 Score=285.46 Aligned_cols=188 Identities=19% Similarity=0.255 Sum_probs=136.0
Q ss_pred CccccCCCCCCCCCCCcc--------cccCCCCCeEEEEEEeCCC-----cc----ceeecccccc--cc-ccceeeEEE
Q 040938 1 HGVRQLRSGWADGPAYIT--------QCPIQTGQSYVYNFTVTGQ-----RG----TLFWHAHISW--LR-ATLYGPIVI 60 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vt--------q~~I~PG~~~~Y~f~~~~~-----~G----t~wYH~H~~~--~~-~Gl~G~liV 60 (487)
|||+++. +|||+|++| ||+|+||++|+|+|+++++ +| |||||||.+. |. +||+|+|||
T Consensus 96 HGl~~~~--~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G~~c~T~wYHsH~~~~~q~~~GL~G~lIV 173 (647)
T 1sdd_B 96 HGLSYEK--SSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVNPEKDIHSGLIGPLLI 173 (647)
T ss_dssp ETCC-----------------------CCBCTTCCEECCEECCTTTSCCSSSCSEEEEEEECCSSHHHHHTTTCEEEEEE
T ss_pred CcceeCC--CCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCCCCceEEEEccCCCCcccccccCccCEEE
Confidence 8999974 699999987 9999999999999999654 57 9999999964 44 799999999
Q ss_pred eCCCCCCC--CCCCCCcceeEEee------eccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEe
Q 040938 61 LPKRHASY--PFPQPFKEVPMIFG------EWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVK 132 (487)
Q Consensus 61 ~~~~~~~~--~~~~~d~e~~l~l~------d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~ 132 (487)
+++..... ..+..++|++|+|+ ||+++..........+ ......++.++|||+.. ..|.|+|+
T Consensus 174 ~~~~~~~~~~~~~~~~~e~~l~l~~~d~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~iNG~~~--------~~p~l~v~ 244 (647)
T 1sdd_B 174 CRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTRSWRRAS-SEVKNSHEFHAINGMIY--------NLPGLRMY 244 (647)
T ss_dssp ECTTSSCTTSCCCSSCCEEEEEEEEEEGGGSSCCC----------------CCCEEEEETTBSS--------CCCCCEEE
T ss_pred eeCCCcccccCCCCcceeEEEEEEeecCccccccccCcccccccCC-cchhhcCceeccCCEec--------CCCCeEEc
Confidence 99764221 12234689999999 7887654321111111 11123568999999973 13789999
Q ss_pred CCCEEEEEEEecCCCc-eEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 133 PGKTYLLRMINAALND-ELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 133 ~G~~~rlR~iN~~~~~-~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
+|++|||||+|+++.. .+.|+|+||.|+||+.||. .++++.|.||||+||+|+++++ |.|.+.++..
T Consensus 245 ~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi~~d~~-----~~d~v~l~pg~r~~v~~~~~~p---G~w~~hch~~ 312 (647)
T 1sdd_B 245 EQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQH-----QLGVWPLLPGSFKTLEMKASKP---GWWLLDTEVG 312 (647)
T ss_dssp TTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCE-----EESSEEECTTEEEEEEEECCSS---EEEEEECCCH
T ss_pred CCCEEEEEEEeCCCCCcceeEEEcCcEEEEecCCCc-----ccceEEECCCeEEEEEEEeccc---eEeecccCcc
Confidence 9999999999999865 7999999999999999864 7899999999999999999986 8999998853
No 33
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.96 E-value=8.6e-30 Score=250.13 Aligned_cols=182 Identities=17% Similarity=0.226 Sum_probs=143.9
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeC------------CCccceeeccccccc------c-ccceeeEEEe
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVT------------GQRGTLFWHAHISWL------R-ATLYGPIVIL 61 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~------------~~~Gt~wYH~H~~~~------~-~Gl~G~liV~ 61 (487)
||+++.+ +|||++ +|||+|+||++|+|+|+++ .++||||||||.+++ . +||+|+|||+
T Consensus 85 HG~~~~~--~~DG~~-~~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~ 161 (299)
T 3t9w_A 85 HGVDYDV--NSDGTL-MNGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVR 161 (299)
T ss_dssp SSSBCCG--GGSCCT-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEE
T ss_pred CCcccCC--ccCCCc-cccCccCCCCeEEEEEEeecccccCCCcCCCCCceeEEEecCCcccccchhhhcccccceEEEe
Confidence 8999874 699996 8999999999999999974 368999999998653 2 6999999999
Q ss_pred CCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEE
Q 040938 62 PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRM 141 (487)
Q Consensus 62 ~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~ 141 (487)
++.+. ..|+|++|++++|. +||+..+ ..+.++++.|+++||||
T Consensus 162 ~~~~~-----~~d~e~~l~~~~~~-------------------------~Ng~~~~-------~~p~l~v~~Ge~Vr~~l 204 (299)
T 3t9w_A 162 RQGDL-----LPKRQFTVVFNDMM-------------------------INNRAHH-------DAPTFEANLGERVEWIA 204 (299)
T ss_dssp CTTCC-----CCSEEEEEEEETTE-------------------------ETTCCTT-------CCCEEEEETTCEEEEEE
T ss_pred ccccc-----Cccccceeeeeeee-------------------------ecCcccc-------ccccceecCCCEEEEEE
Confidence 88652 34899999998764 5666431 25789999999999999
Q ss_pred EecCCCceEEEEEcCceEEEEEecCcccc---eeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcc
Q 040938 142 INAALNDELFFSIANHTLTVVETDAVYVK---PIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTT 218 (487)
Q Consensus 142 iN~~~~~~~~~~i~~h~~~via~DG~~v~---P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 218 (487)
+|++. ....|+|+||.|+|++.|+.... +..+|++.|.||||++++|.+.+...-|.|.+.+....-. ...
T Consensus 205 iN~~~-~~HpfHlHGh~F~v~~~g~~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~~HCHi~~H~-----~~G 278 (299)
T 3t9w_A 205 IGHGS-NFHTFHLHGHRWLDNRTGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQNHS-----DMG 278 (299)
T ss_dssp EEESS-CCCEEEETTCCEESSSSSSCCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEEEEECSHHHH-----HTT
T ss_pred Eeccc-cceeeeEecceEEEEecccccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEEEEcCCHHHH-----hcC
Confidence 99996 45789999999999999987763 4578999999999999998865432129999999853211 112
Q ss_pred eEEEEEEecC
Q 040938 219 TAGVLEYEQP 228 (487)
Q Consensus 219 ~~ail~y~~~ 228 (487)
..+++.+...
T Consensus 279 M~~~f~V~~~ 288 (299)
T 3t9w_A 279 MAGMFLVRNA 288 (299)
T ss_dssp CEEEEEEECT
T ss_pred CeEEEEEECC
Confidence 4456666543
No 34
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=99.96 E-value=3.1e-30 Score=258.73 Aligned_cols=210 Identities=16% Similarity=0.190 Sum_probs=151.2
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeecccccc----cc-ccceeeEEEeCCCCCC----CCCC
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISW----LR-ATLYGPIVILPKRHAS----YPFP 71 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~----~~~~ 71 (487)
||+++.+....||++.++| |.||++|+|+|++ .++||||||||.++ |. +||+|+|||++++... .+.
T Consensus 95 hg~~~~~~~~~~~~~~~~~--i~PG~~~~y~~~~-~~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~- 170 (340)
T 2bw4_A 95 HNIDFHAATGALGGGALTQ--VNPGEETTLRFKA-TKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPL- 170 (340)
T ss_dssp BCCEETTSCSGGGGGGGCC--BCTTEEEEEEEEC-CSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBCEECTTSCEE-
T ss_pred CcceeCCcCCCCCCccceE--eCCCCEEEEEEEC-CCCeEEEEEcCCCCchhhHHhCcCEEEEEEccCcCcccccCCCc-
Confidence 8888887655566667775 9999999999998 68999999999874 54 8999999999875311 121
Q ss_pred CCCcceeEEeeecccc--ChHH---------HHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEE
Q 040938 72 QPFKEVPMIFGEWWKA--DTEK---------IINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLR 140 (487)
Q Consensus 72 ~~d~e~~l~l~d~~~~--~~~~---------~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR 140 (487)
.+|.|++|+++||++. .... ........ .....++.++|||+.+... ..+.++|++|+++||+
T Consensus 171 ~~d~e~~l~l~D~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iNG~~~~~~-----~~~~l~v~~G~r~Rl~ 244 (340)
T 2bw4_A 171 TYDKIYYVGEQDFYVPKDEAGNYKKYETPGEAYEDAVKA-MRTLTPTHIVFNGAVGALT-----GDHALTAAVGERVLVV 244 (340)
T ss_dssp CCSEEEEEEEEEECCCBCTTSCBCCCCSHHHHHHHHHHH-HHTTCCSEEEETTSTTTTS-----GGGCEEEETTCEEEEE
T ss_pred CcceeEEEeeeeeeeccccCCcccccccccccccchhhH-hhcCCCCEEEECCccCCcc-----CCCceEcCCCCEEEEE
Confidence 4689999999999973 1110 00000000 0013568999999975221 1478999999988766
Q ss_pred EEecCCCceEEEEEcCceEEEEEecCcccc-ee-EeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcc
Q 040938 141 MINAALNDELFFSIANHTLTVVETDAVYVK-PI-KTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTT 218 (487)
Q Consensus 141 ~iN~~~~~~~~~~i~~h~~~via~DG~~v~-P~-~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 218 (487)
++|++....+ ..+++|.|+|++ ||.++. |. .++++.|.||||+||+|+++++ |.|+++++..... ....
T Consensus 245 n~~~~~~~~~-~~i~gh~~~Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~~~~p---G~y~~~~h~~~~h----~~~G 315 (340)
T 2bw4_A 245 HSQANRDTRP-HLIGGHGDYVWA-TGKFRNPPDLDQETWLIPGGTAGAAFYTFRQP---GVYAYVNHNLIEA----FELG 315 (340)
T ss_dssp EEESSSCBCE-EEETCCEEEEET-TCCTTSCCEEEESCCCBCTTEEEEEEEECCSC---EEEEEEESSHHHH----HTTS
T ss_pred ECCCCCccce-EEecCcceEEeC-CCcccCCccccceEEEeCCCceEEEEEECCCC---eeeEEEcCchHHH----HhCC
Confidence 6655433323 248899999997 999985 54 5899999999999999999985 9999999864211 0123
Q ss_pred eEEEEEEecCC
Q 040938 219 TAGVLEYEQPN 229 (487)
Q Consensus 219 ~~ail~y~~~~ 229 (487)
..++++|.+..
T Consensus 316 m~~~~~V~~~~ 326 (340)
T 2bw4_A 316 AAGHFKVTGEW 326 (340)
T ss_dssp CEEEEEEESCC
T ss_pred CEEEEEECCCC
Confidence 56889998753
No 35
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.96 E-value=5.3e-31 Score=260.01 Aligned_cols=178 Identities=14% Similarity=0.190 Sum_probs=126.5
Q ss_pred Cccc----cCCCCCCCCCCCcc--cccCCCCCeEEEEEEeCCC---------ccceeecccccc--cc-ccceeeEEEeC
Q 040938 1 HGVR----QLRSGWADGPAYIT--QCPIQTGQSYVYNFTVTGQ---------RGTLFWHAHISW--LR-ATLYGPIVILP 62 (487)
Q Consensus 1 HGl~----~~~~~~~DGv~~vt--q~~I~PG~~~~Y~f~~~~~---------~Gt~wYH~H~~~--~~-~Gl~G~liV~~ 62 (487)
||++ +.|.+++||+++++ ||+|+||++|+|+|+++++ +||||||||... |. +||+|+|||++
T Consensus 87 HGl~~~~~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~ 166 (306)
T 1sdd_A 87 QGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICK 166 (306)
T ss_dssp ESSCCCTTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECCGGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEEC
T ss_pred cceecccccCCCccCCCCcccccCCCccCCCCeEEEEEEeCCccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEcc
Confidence 8999 55666667766666 7999999999999998544 379999999876 44 79999999998
Q ss_pred CCCCCC-CC-CCCCcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEE
Q 040938 63 KRHASY-PF-PQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLR 140 (487)
Q Consensus 63 ~~~~~~-~~-~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR 140 (487)
+..... +. ...|+|++|+++||.... +. ....++.++|||+... ..|.++|++|+++|||
T Consensus 167 ~~~~~~~~~~~~~d~e~~l~~~d~d~~~---------~~--~~~~~~~~~ING~~~~-------~~p~l~v~~G~~vrlr 228 (306)
T 1sdd_A 167 KGTLTEDGTQKMFEKQHVLMFAVFDESK---------SW--NQTSSLMYTVNGYVNG-------TMPDITVCAHDHISWH 228 (306)
T ss_dssp TTCBCTTSSBSSSCCCCCCBCCEEETTS---------SS--SCCCCEEECSSSCCSS-------CCCCCCCCCC------
T ss_pred CCCCCccCCcCcccceEEEEEEeccccc---------cc--ccCCCcceeeCCEecC-------CCcceEEcCCCEEEEE
Confidence 753111 11 135889999999984321 01 1123678999999741 2478999999999999
Q ss_pred EEecCCC-ceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 141 MINAALN-DELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 141 ~iN~~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
|+|+|.. ..+.|+|+||.|.+ ||. .+|++.|.||||+||+|+++++ |.|++.++..
T Consensus 229 liN~g~~~~~h~~hlhG~~~~~---dG~-----~~dtv~l~pger~~v~~~~~~p---G~~~~hch~~ 285 (306)
T 1sdd_A 229 LIGMSSGPELFSIHFNGQVLEQ---NHH-----KISAITLVSATSTTANMTVSPE---GRWTIASLIP 285 (306)
T ss_dssp BBCCCSSSCEECCBCSSTTCEE---TTE-----ECSCCCEETTCCBC-----------CCCCCBCCST
T ss_pred EEeCCCCCccEEEEECCcEeee---CCE-----EcceEEECCCcEEEEEEEcCCC---eEEEEEeCCh
Confidence 9999987 56789999999875 883 5899999999999999999886 8999998854
No 36
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=99.96 E-value=6.3e-28 Score=250.98 Aligned_cols=194 Identities=20% Similarity=0.275 Sum_probs=154.1
Q ss_pred CCCCCCCcccccCCCCCeEEEEEEeCCCccceeeccccc---ccc-ccceeeEEEeCCCCCCCCCCCCCcceeEEeeecc
Q 040938 10 WADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHIS---WLR-ATLYGPIVILPKRHASYPFPQPFKEVPMIFGEWW 85 (487)
Q Consensus 10 ~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~---~~~-~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~ 85 (487)
.+||+|..+| |.||++|+|.|++ +++||||||||.+ .+. +||+|+|+|+++.. ++.+|+|++++++||+
T Consensus 228 ~~DG~~~~~~--i~pG~~~~~~~~~-~~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~~----~P~~d~~~~~~~~~~~ 300 (447)
T 2dv6_A 228 GPGGAAAFTQ--TDPGEETVVTFKA-LIPGIYVYHCATPSVPTHITNGMYGLLLVEPEGG----LPQVDREFYVMQGEIY 300 (447)
T ss_dssp SGGGGGGGCC--BCTTCEEEEEEEC-CSCEEEEEECCSSSHHHHHHTTCEEEEEEECTTC----SCCCSEEEEEEEEEEC
T ss_pred CCCCCCccEE--eCCCCEEEEEEEC-CCCeEEEEEeCCCChHHHHhCCCEEEEEEeCCCC----CCCCCeeEEEEecccc
Confidence 3799988765 9999999999998 7899999999974 343 79999999998642 2356889999999998
Q ss_pred ccChHHH-------HHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCce
Q 040938 86 KADTEKI-------INQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHT 158 (487)
Q Consensus 86 ~~~~~~~-------~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~ 158 (487)
+...... .... .+ ..++.++|||+..++.. .+.++|++|++|||||+|++....+.|+|+||.
T Consensus 301 ~~~~~~~~g~~~~~~~~~--~~---~~~~~~~iNG~~~~~~~-----~~~~~v~~g~~vrlrliN~~~~~~h~~hlhGh~ 370 (447)
T 2dv6_A 301 TVKSFGTSGEQEMDYEKL--IN---EKPEYFLFNGSVGSLTR-----SHPLYASVGETVRIFFGVGGPNFTSSFHVIGEI 370 (447)
T ss_dssp BSSCTTCCEECCBBHHHH--HT---TCCSEEEETTSTTCCCC-----CCCEEECTTCEEEEEEEEEESSCCEEEEEETCC
T ss_pred cCCcccccccccCChHHh--hc---cCCCEEEECCcccCCCC-----CcceEECCCCEEEEEEEeCCCCceEeEEEcCcE
Confidence 7532100 0011 11 23578999999764321 247999999999999999998888999999999
Q ss_pred EEEEEecCcccce-e-EeeEEEeCCCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecC
Q 040938 159 LTVVETDAVYVKP-I-KTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQP 228 (487)
Q Consensus 159 ~~via~DG~~v~P-~-~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~ 228 (487)
|+||+.||++++| . ..|++.|.||||++|+|+++++ |.|+++++..... .....++++|.+.
T Consensus 371 f~vv~~dG~~~~~p~~~~dtv~l~pg~r~~i~~~~~~p---G~~~~hch~~~h~-----~~Gm~~~~~v~~~ 434 (447)
T 2dv6_A 371 FDHVYSLGSVVSPPLIGVQTVSVPPGGATIVDFKIDRA---GRYILVDHALSRL-----EHGLVGFLNVDGP 434 (447)
T ss_dssp EEEECGGGCSSSCCEEEESEEEECTTEEEEEEEECCSC---EEEEEEESSGGGG-----GGTCCEEEEECSC
T ss_pred EEEEEcCCcccCCCcccccEEEECCCcEEEEEEECCCC---EEEEEEecCcCcc-----ccCCEEEEEEeCC
Confidence 9999999999964 4 5899999999999999999986 9999999864321 1235789999765
No 37
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.95 E-value=2.3e-29 Score=274.95 Aligned_cols=186 Identities=11% Similarity=0.129 Sum_probs=145.3
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCC---------Cccceeeccccccc--c-ccceeeEEEeCCCCCCC
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTG---------QRGTLFWHAHISWL--R-ATLYGPIVILPKRHASY 68 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~---------~~Gt~wYH~H~~~~--~-~Gl~G~liV~~~~~~~~ 68 (487)
||++++++.+ ||+++ +||+|+||++|+|+|++++ ++||||||||.+.+ . +||+|+|||+++.....
T Consensus 226 HG~~~~~~~~-dG~~~-~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh~~~~~q~~~GL~G~liV~~~~~~~~ 303 (770)
T 2r7e_B 226 SLISYEEDQR-QGAEP-RKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSGLIGPLLVCHTNTLNP 303 (770)
T ss_dssp TTCCCCCCSS-SCTTT-TSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCCSSSSHHHHTSCCEEEEEECSTTSCS
T ss_pred cccccccccC-CCCcC-ccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeeccCCcHHHHhCCceeeEEECCCccccc
Confidence 9999998753 69998 9999999999999999864 89999999999874 4 89999999998864221
Q ss_pred --CCCCCCcceeEEeee------ccccChHHHHHHHhh-cC-------CCCCCCCeEEEcCcCCCCCCCCCCceeeEEEe
Q 040938 69 --PFPQPFKEVPMIFGE------WWKADTEKIINQALQ-TG-------AAPNISDAFTINGLPGPLYNCSAKDTFKLKVK 132 (487)
Q Consensus 69 --~~~~~d~e~~l~l~d------~~~~~~~~~~~~~~~-~g-------~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~ 132 (487)
..+..++|++|++++ |+++..... ... .. ......+..+|||+.. | ..+.++|+
T Consensus 304 ~~~~~~~d~E~vl~~~~~de~~swy~~~~~~~---~~~~p~~~~~~d~~~~~~~~~~~ING~~~----~---~~~~l~v~ 373 (770)
T 2r7e_B 304 AHGRQVTVQEFALFFTIFDETKSWYFTENMER---NCRAPCNIQMEDPTFKENYRFHAINGYIM----D---TLPGLVMA 373 (770)
T ss_dssp SSCCCCSSEEEECCCCEECCSSSSCTTGGGSS---CSCCSSCCCSSSSSSTTTSCEECTTSCTT----T---TCCCCCCC
T ss_pred ccCCCccceEEEEEEeecCccccchhccchhh---cccCccccccCCccccccCCccccCCccC----C---CCCCeEEe
Confidence 112457899888754 555432110 000 00 0011245689999963 1 24678999
Q ss_pred CCCEEEEEEEecCCCc-eEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 133 PGKTYLLRMINAALND-ELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 133 ~G~~~rlR~iN~~~~~-~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
+|++|||||+|++... .+.|+|+||.|+|++.||. .+|++.|.||||++|+|+++++ |.|.+.++.
T Consensus 374 ~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~-----~~Dtv~l~Pg~~~~v~~~ad~p---G~w~~hcH~ 440 (770)
T 2r7e_B 374 QDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY-----KMALYNLYPGVFETVEMLPSKA---GIWRVECLI 440 (770)
T ss_dssp SSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC-----EESEEECCTTCCCEEEECCSSC---BCCCBCCCS
T ss_pred CCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc-----eeeEEEECCCeEEEEEEEeCCC---CceEEEecc
Confidence 9999999999998653 7899999999999999974 7899999999999999999987 899998875
No 38
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.95 E-value=9.4e-28 Score=234.71 Aligned_cols=235 Identities=16% Similarity=0.134 Sum_probs=163.6
Q ss_pred CCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceE
Q 040938 106 SDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 106 ~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
....++||+.. .|+|++++|+++++|+.|... ....++++|.. ..+.||.+.. +...|.||+++
T Consensus 54 ~~~~~~ng~~p---------gP~i~~~~Gd~v~v~~~N~~~-~~~~iH~HG~~--~~~~DG~p~~----~~~~i~PG~~~ 117 (288)
T 3gdc_A 54 FKGWSYNGRIP---------GPTLWAREGDALRIHFTNAGA-HPHTIHFHGVH--RATMDGTPGI----GAGSIAPGQSF 117 (288)
T ss_dssp EEEEEETTBSS---------CCEEEEETTCEEEEEEEECSS-SCBCCEESSCC--CGGGSCCTTS----TTCSBCTTCEE
T ss_pred EEEEEECCccC---------CCcEEEeCCCEEEEEEEeCCC-CcccEEecccc--ccccCCCCCc----cceeECCCCEE
Confidence 35789999852 489999999999999999986 45788998875 5688998652 33468999999
Q ss_pred EEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhcccc
Q 040938 186 NVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLAT 265 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~ 265 (487)
+..++++++ |.||..++.......... ...+.|.++.... . +
T Consensus 118 ~y~f~~~~~---Gt~~yH~H~~~~~~~~~~--Gl~G~liV~~~~~---------~-~----------------------- 159 (288)
T 3gdc_A 118 TYEFDATPF---GTHLYHCHQSPLAPHIAK--GLYGGFIVEPKEG---------R-P----------------------- 159 (288)
T ss_dssp EEEEECCSC---EEEEEECCCSSHHHHHHT--TCEEEEEEECSSC---------C-C-----------------------
T ss_pred EEEEEcCCC---ccEEEEecCcchHHHHhC--cCeEEEEEeCCcc---------C-C-----------------------
Confidence 999999765 999999885310000011 2333344432200 0 0
Q ss_pred CCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCcc
Q 040938 266 AKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFK 345 (487)
Q Consensus 266 ~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 345 (487)
..++.+.+.+.--... .+ .....|.+||+.|..
T Consensus 160 ---------~~d~e~~l~~~d~~~~-------~g--~~~~~~~iNG~~~~~----------------------------- 192 (288)
T 3gdc_A 160 ---------PADDEMVMVMNGYNTD-------GG--DDNEFYSVNGLPFHF----------------------------- 192 (288)
T ss_dssp ---------CCSEEEEEEEEEECCS-------ST--TCCSEEEETTSTTHH-----------------------------
T ss_pred ---------CCcceEEEEEeeEecC-------CC--CCcceEEECcccccc-----------------------------
Confidence 0122332222110000 00 011257888876510
Q ss_pred ccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccc
Q 040938 346 FNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERN 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rD 425 (487)
....+.++.|++|+|.|.|.+. ..+.|||||||+.|+|++.+.. +..+.++|
T Consensus 193 ---------------~~~~l~v~~Ge~vr~~l~N~g~-~~~~H~fHlhG~~f~v~~~g~~------------~~~~~~~D 244 (288)
T 3gdc_A 193 ---------------MDFPVKVKQHELVRIHLINVLE-YDPINSFHIHGNFFHYYPTGTM------------LTPSEYTD 244 (288)
T ss_dssp ---------------HHSCEEEETTCCEEEEEEECCC-SSSEEEEEETTCCEEEEETTCC------------SSCSEEES
T ss_pred ---------------cCcccccCCCCEEEEEEEeCCC-CCcceeEEEcCCEEEEEcCCCc------------cCCCceee
Confidence 0113577889999999999762 1346999999999999975421 23457999
Q ss_pred eEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeC
Q 040938 426 TVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 426 tv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~ 469 (487)
|+.|+||++++|+|++++||.|+||||+++|++.|||+.|.|.+
T Consensus 245 tv~v~pg~~~~v~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 245 TISQVQGQRGILELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EEEEETTCEEEEEECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEEeCCCceEEEEEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999863
No 39
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.95 E-value=3.9e-27 Score=235.67 Aligned_cols=246 Identities=19% Similarity=0.184 Sum_probs=160.4
Q ss_pred CCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEe---cCcccceeEeeEEEeCCC
Q 040938 106 SDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVET---DAVYVKPIKTKVVLITPG 182 (487)
Q Consensus 106 ~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~---DG~~v~P~~~~~l~l~pG 182 (487)
...+++||+.. .|+|+|++|+++|+||+|.+... ++|+.|.+++.+. ||.+. ++...|.||
T Consensus 23 ~~~~~~NG~~p---------GP~I~v~~Gd~v~v~v~N~l~~~---~siH~HG~~~~~~~~~DGvp~----vtq~~I~PG 86 (339)
T 2zwn_A 23 YKVFGFNGQVP---------GPLIHVQEGDDVIVNVTNNTSLP---HTIHWHGVHQKGTWRSDGVPG----VTQQPIEAG 86 (339)
T ss_dssp EEEEEETTBSS---------CCEEEEETTCEEEEEEEEESSSC---BCCEEETCCCTTCGGGSCCBT----TTBCCBCTT
T ss_pred EEEEEECCccC---------CCeEEEECCCEEEEEEEECCCCC---ccEEeCCCCcCCCcccCCCCc----cccCccCCC
Confidence 35789999852 48999999999999999998643 4555566777775 99864 234569999
Q ss_pred ceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhc
Q 040938 183 QTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRS 262 (487)
Q Consensus 183 ~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 262 (487)
||+++.+++++. |+||.+++............ .+.+...... ...+ +.
T Consensus 87 ~~~~y~f~~~~~---Gt~wyH~H~~~~~q~~~~Gl--~G~liV~p~~-------~~~~-~~------------------- 134 (339)
T 2zwn_A 87 DSYTYKFKADRI---GTLWYHCHVNVNEHVGVRGM--WGPLIVDPKQ-------PLPI-EK------------------- 134 (339)
T ss_dssp CEEEEEEECCSC---EEEEEECCSSHHHHTTTSCC--EEEEEEECSS-------CCTT-GG-------------------
T ss_pred CeEEEEEECCCC---EEEEEEecCCchhhhhcCCc--eEeEEecCCC-------cccc-cc-------------------
Confidence 999999999865 99999987422000000112 2223232210 0000 00
Q ss_pred cccCCCCCCCCCCcccEEEEEec-ccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCC
Q 040938 263 LATAKFPAKVPRKVDRLFFFTVG-LGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPAN 341 (487)
Q Consensus 263 ~~~~~~p~~~p~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 341 (487)
..++.+.+.++ ..............+......|.+||+.|.
T Consensus 135 ------------~~d~e~~l~l~d~~~~~~~~~~~~g~~~~~~~~~~ING~~~~-------------------------- 176 (339)
T 2zwn_A 135 ------------RVTKDVIMMMSTWESAVADKYGEGGTPMNVADYFSVNAKSFP-------------------------- 176 (339)
T ss_dssp ------------GCSEEEEEEEEEECGGGTTCTTCCCSTTSCCCEEEETTBCTT--------------------------
T ss_pred ------------cCCceEEEEeeheecccccccCCCCCCccccceEEEccccCC--------------------------
Confidence 00111111110 000000000000000001124667775441
Q ss_pred CCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCC
Q 040938 342 PPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDP 421 (487)
Q Consensus 342 ~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p 421 (487)
...++.++.|++++|+|+|.+ ...||||||||.|+|++...+ .+.+|
T Consensus 177 -------------------~~~~~~v~~G~~vrlrliN~~---~~~h~~hlhGh~f~vi~~DG~-----------~~~~p 223 (339)
T 2zwn_A 177 -------------------LTQPLRVKKGDVVKIRFFGAG---GGIHAMHSHGHDMLVTHKDGL-----------PLDSP 223 (339)
T ss_dssp -------------------SSCCEEECTTCEEEEEEEECS---SSCEEEEETTCCEEEEEETTE-----------EEEEE
T ss_pred -------------------CcccEEECCCCEEEEEEEeCC---CceEEEEECCcEEEEEEeCCe-----------ecCCC
Confidence 122467889999999999976 368999999999999998422 22347
Q ss_pred CccceEEecCCcEEEEEEEcCCCeeEEEeecchhh------hhccceEEEEEeCC
Q 040938 422 AERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVH------TSWGLKMAWIVNDG 470 (487)
Q Consensus 422 ~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H------~~~GM~~~~~V~~~ 470 (487)
.++||+.|+||+++.|+|++|+||.|+||||+++| ++.||++.+.+...
T Consensus 224 ~~~dtv~l~pg~r~~v~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~ 278 (339)
T 2zwn_A 224 YYADTVLVSPGERYDVIIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGV 278 (339)
T ss_dssp EEESEEEECTTCEEEEEEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTS
T ss_pred cEEEEEEECCCCEEEEEEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECCC
Confidence 78999999999999999999999999999999999 88999999998654
No 40
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.94 E-value=1.6e-26 Score=228.85 Aligned_cols=248 Identities=18% Similarity=0.188 Sum_probs=163.2
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEE-EEEecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLT-VVETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~-via~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..+++||+.. .|+|++++|+++++|+.|... ....++++|.... ..+.||.+. +....|.||+++
T Consensus 23 ~~~~~ng~~p---------GP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~~~~~~DG~p~----~t~~~i~PG~~~ 88 (318)
T 3g5w_A 23 HTFAFNGQVP---------APLIHVMEGDDVTVNVTNMTT-LPHTIHWHGMLQRGTWQSDGVPH----ATQHAIEPGDTF 88 (318)
T ss_dssp EEEEETTBSS---------CCEEEEETTCEEEEEEEECSS-SCBCCEEETCCCTTCGGGSCCBT----TTBCCBCTTCEE
T ss_pred EEEEECCccC---------CceEEEeCCCEEEEEEEeCCC-CceeEEecCcCCCCCcccCCCcc----cccccCCCCCEE
Confidence 5789999852 489999999999999999975 4577888887543 246899864 223468999999
Q ss_pred EEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhcccc
Q 040938 186 NVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLAT 265 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~ 265 (487)
+..++++++ |+||..++.......... ...+.|...... ...+ +.
T Consensus 89 ~y~f~~~~~---Gt~wYH~H~~~~~~~~~~--Gl~G~lIV~~~~-------~~~~-~~---------------------- 133 (318)
T 3g5w_A 89 TYKFKAEPA---GTMWYHCHVNVNEHVTMR--GMWGPLIVEPKN-------PLPI-EK---------------------- 133 (318)
T ss_dssp EEEEECCSC---EEEEEECCSSHHHHHHHS--CCEEEEEEECSS-------CCHH-HH----------------------
T ss_pred EEEEEcCCC---EEEEEEccCChhhhhccC--CCEEEEEEcCCC-------cccc-cc----------------------
Confidence 999999865 999998875210000001 223333333221 0000 00
Q ss_pred CCCCCCCCCCcccEEEEEec-ccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCc
Q 040938 266 AKFPAKVPRKVDRLFFFTVG-LGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPF 344 (487)
Q Consensus 266 ~~~p~~~p~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~ 344 (487)
..++.+.+.++ ..............+....-.|+|||+.|.
T Consensus 134 ---------~~d~e~~l~l~dw~~~~~~~~~~~~~~~~~~d~~~ING~~~~----------------------------- 175 (318)
T 3g5w_A 134 ---------TVTKDYILMLSDWVSSWANKPGEGGIPGDVFDYYTINAKSFP----------------------------- 175 (318)
T ss_dssp ---------TCCEEEEEEEEEECGGGTTCTTCCCCTTCCCCEEEETTBCBT-----------------------------
T ss_pred ---------cccceeEEEEEeeccccccccccCCCCCCcCcEEEEcCcCCC-----------------------------
Confidence 00111111110 000000000000000001124778886551
Q ss_pred cccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 040938 345 KFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAER 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~r 424 (487)
....+.++.|++|+|+|.|.+. ..||||||||.|+|+++..+ .+.+|.++
T Consensus 176 ----------------~~~~l~v~~G~~vrlrliN~~~---~~h~~hlhGh~f~vi~~dG~-----------~~~~p~~~ 225 (318)
T 3g5w_A 176 ----------------ETQPIRVKKGDVIRLRLIGAGD---HVHAIHTHGHISQIAFKDGF-----------PLDKPIKG 225 (318)
T ss_dssp ----------------SSCCEEECTTCEEEEEEEECSS---SCEEEEETTSCEEEEEETTE-----------EEEEEEEE
T ss_pred ----------------CCccEEeCCCCEEEEEEEeCCC---ceEEEEECCcEEEEEecCCc-----------ccCCCccc
Confidence 0123678899999999999763 58999999999999998522 12357799
Q ss_pred ceEEecCCcEEEEEEEcCCCeeEEEeecchhhhh------ccceEEEEEeCCC
Q 040938 425 NTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTS------WGLKMAWIVNDGK 471 (487)
Q Consensus 425 Dtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~------~GM~~~~~V~~~~ 471 (487)
||+.|.||+++.|+|++++||.|+||||+++|++ .|||+.++|+..+
T Consensus 226 dtv~l~pger~~v~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 226 DTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp SEEEECTTCEEEEEEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred cEEEECCCCEEEEEEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 9999999999999999999999999999999998 6899999986543
No 41
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=99.93 E-value=9.6e-28 Score=261.68 Aligned_cols=186 Identities=18% Similarity=0.256 Sum_probs=138.5
Q ss_pred CccccCCCCCCC-----CCCCcccccCCCCCeEEEEEEeCCCcc---------ceeecccccccc---ccceeeEEEeCC
Q 040938 1 HGVRQLRSGWAD-----GPAYITQCPIQTGQSYVYNFTVTGQRG---------TLFWHAHISWLR---ATLYGPIVILPK 63 (487)
Q Consensus 1 HGl~~~~~~~~D-----Gv~~vtq~~I~PG~~~~Y~f~~~~~~G---------t~wYH~H~~~~~---~Gl~G~liV~~~ 63 (487)
|||++. ++|+| |++++|||+|+||++|+|+|++++++| |||||||.+.+. +||+|+|||+++
T Consensus 479 HGl~~~-~~~~DG~~~~G~~~~~~~~I~PG~t~tY~f~~~~~agPg~~d~~~gT~wYHsH~~~~~q~~~GL~G~lIV~~~ 557 (742)
T 2r7e_A 479 HGITDV-RPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYK 557 (742)
T ss_dssp TTCSEE-CCTTCSCCSSSCSSTTTSCCBSSCEECCEEECCSTTSCCSSSCSCCCCEEECCSSSSSTGGGSCCEECCCBCC
T ss_pred cccccC-CcccccccCCCCcccccccCCCCCeEEEEEEeccccCCcccCCCceEEEEecCcchhhhhhccceeeEEEcCc
Confidence 899985 46776 567889999999999999999976555 999999998753 799999999987
Q ss_pred CCC-CCC-CCCCCcceeEEeee------ccccChHHHHHHHhhcCC-C---C---CCCCeEEEcCcCCCCCCCCCCceee
Q 040938 64 RHA-SYP-FPQPFKEVPMIFGE------WWKADTEKIINQALQTGA-A---P---NISDAFTINGLPGPLYNCSAKDTFK 128 (487)
Q Consensus 64 ~~~-~~~-~~~~d~e~~l~l~d------~~~~~~~~~~~~~~~~g~-~---~---~~~d~~lvNG~~~~~~~~~~~~~~~ 128 (487)
... +.. ....|+|++|++++ |+++.....+. ..... . + ......+|||+.. |+ .+
T Consensus 558 ~~~~~~~~~~~~d~E~~l~~~~fde~~~wy~~~~~~~~~--~~p~~v~~~~~~~~~~~~~~~ING~~~----~~---~~- 627 (742)
T 2r7e_A 558 ESVDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFL--PNPAGVQLEDPEFQASNIMHSINGYVF----DS---LQ- 627 (742)
T ss_dssp CSCCCCCCSSCCSCCCEEEECBCCGGGSSCSHHHHHHHS--SSSSCSCCCCHHHHGGGCCBCTTTTCS----SC---CC-
T ss_pred cccccccCcCCCCceEEEEeeccccccccccccchhhcc--cCchhcccccccccccCceeeecCcCC----CC---Cc-
Confidence 531 111 12458999999964 55432211110 00000 0 0 0112468999963 11 23
Q ss_pred EEEeCCCEEEEEEEecCCC-ceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 129 LKVKPGKTYLLRMINAALN-DELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 129 ~~v~~G~~~rlR~iN~~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
+.|++|++|||||+|+|+. ..+.|+|+||.|+|+ |..+|+|.|.||||++|+|+++++ |.|.+.++..
T Consensus 628 l~v~~Ge~vr~rliN~g~~~~~h~~HlhGh~f~v~--------~~~~Dtv~l~Pg~~~~v~~~ad~p---G~w~~hcH~~ 696 (742)
T 2r7e_A 628 LSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHK--------MVYEDTLTLFPFSGETVFMSMENP---GLWILGCHNS 696 (742)
T ss_dssp CCCCSSCCCEEEEEECSSCCCCCCCEESSSCCCCB--------SSSBCSSCCCCCSSEECCEECCCC---CCSCCEECCC
T ss_pred EEEeCCCEEEEEEEeCCCCcceEEEEEcCcEEEEe--------ccceeEEEECCCcEEEEEEEcCCC---eEEEEEeCCc
Confidence 8999999999999998764 458999999999987 467899999999999999999987 8999999865
Q ss_pred C
Q 040938 208 A 208 (487)
Q Consensus 208 ~ 208 (487)
.
T Consensus 697 ~ 697 (742)
T 2r7e_A 697 D 697 (742)
T ss_dssp S
T ss_pred h
Confidence 3
No 42
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.93 E-value=1.7e-25 Score=219.62 Aligned_cols=219 Identities=17% Similarity=0.232 Sum_probs=147.0
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCC----------C
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHK----------S 195 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~----------~ 195 (487)
.|+|+++.|++++++|.|... ...+++.+|..+. -+.||.++. .-.|.|||.+...+++..+ .
T Consensus 57 GP~i~~~~GD~v~v~~~N~l~-~~~siH~HG~~~~-~~~DG~~~~-----~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~ 129 (299)
T 3t9w_A 57 GPVLEMWEGDTLEIDLVNTTD-RVLSLHPHGVDYD-VNSDGTLMN-----GSAVMPGQTRRYTWRSHVGYRRADGSWAEG 129 (299)
T ss_dssp CCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCC-GGGSCCTTT-----TCCBCTTCEEEEEEBCCCCEECTTSCEECC
T ss_pred CceEEEECCeEEEEEEEECCC-CCccEEeCCcccC-CccCCCccc-----cCccCCCCeEEEEEEeecccccCCCcCCCC
Confidence 589999999999999999975 4567888887654 367998652 1137899999888887632 0
Q ss_pred CCcceEEEeccCCCCCCCCC-CcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCC
Q 040938 196 PNASFLIAARPYATGPASFD-NTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPR 274 (487)
Q Consensus 196 ~~g~~~i~~~~~~~~~~~~~-~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~ 274 (487)
.-|.||-.+..........+ .....+.|...... ..
T Consensus 130 ~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~-------------------------------------------~~ 166 (299)
T 3t9w_A 130 TAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQG-------------------------------------------DL 166 (299)
T ss_dssp CCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT-------------------------------------------CC
T ss_pred CceeEEEecCCcccccchhhhcccccceEEEeccc-------------------------------------------cc
Confidence 11667766653211000000 00122222222110 00
Q ss_pred CcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCC
Q 040938 275 KVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPS 354 (487)
Q Consensus 275 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 354 (487)
..|+.+.+.++ .|.+|++.+.
T Consensus 167 ~~d~e~~l~~~--------------------~~~~Ng~~~~--------------------------------------- 187 (299)
T 3t9w_A 167 LPKRQFTVVFN--------------------DMMINNRAHH--------------------------------------- 187 (299)
T ss_dssp CCSEEEEEEEE--------------------TTEETTCCTT---------------------------------------
T ss_pred Cccccceeeee--------------------eeeecCcccc---------------------------------------
Confidence 12455544432 2567765430
Q ss_pred CcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcE
Q 040938 355 NIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGW 434 (487)
Q Consensus 355 ~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~ 434 (487)
....+.++.|++|+|+|+|.+ .+.|||||||+.|+|+..+... .....+.++||+.|.||+.
T Consensus 188 ------~~p~l~v~~Ge~Vr~~liN~~---~~~HpfHlHGh~F~v~~~g~~~---------~~~~~~~~~Dtv~v~PGe~ 249 (299)
T 3t9w_A 188 ------DAPTFEANLGERVEWIAIGHG---SNFHTFHLHGHRWLDNRTGMRT---------SEYDPSPLIDIKDLNPGVS 249 (299)
T ss_dssp ------CCCEEEEETTCEEEEEEEEES---SCCCEEEETTCCEESSSSSSCC---------STTCCCCEESEEECCTTCE
T ss_pred ------ccccceecCCCEEEEEEEecc---ccceeeeEecceEEEEeccccc---------CCcCCCCceeeEEeCCcee
Confidence 123567889999999999976 4789999999999998775322 1223456899999999976
Q ss_pred EEE---EEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 435 VAI---RFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 435 ~~i---rf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
..+ +|+++|||.|+|||||++|++.|||++|+|++.+
T Consensus 250 ~~~~via~~~dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~ 289 (299)
T 3t9w_A 250 FGFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRNAD 289 (299)
T ss_dssp EEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTT
T ss_pred EEEEEEEeeCCCCeeEEEEcCCHHHHhcCCeEEEEEECCC
Confidence 554 4566899999999999999999999999998775
No 43
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.92 E-value=1.8e-24 Score=213.90 Aligned_cols=220 Identities=16% Similarity=0.183 Sum_probs=147.9
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCC----------
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKS---------- 195 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~---------- 195 (487)
.|+|+++.|++++++|.|... ....++.+|..+. -+.||..+. .-.|.||+.+...+++..+.
T Consensus 41 GP~i~~~~Gd~v~v~~~N~l~-~~~siH~HG~~~~-~~~dG~~~~-----~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~ 113 (313)
T 3tas_A 41 GPLIELNEGDTLHIEFENTMD-VPVSLHVHGLDYE-ISSDGTKQS-----RSDVEPGGTRTYTWRTHVPGRRADGTWRAG 113 (313)
T ss_dssp CCCEEEETTCEEEEEEEECSS-SCBCCEESSSBCC-GGGSCSTTT-----TCCBCTTCEEEEEEBCCCCEECTTSCEECC
T ss_pred CCeEEEECCCEEEEEEEECCC-CCccEeecCCcCC-ccCCCCccc-----cCCcCCCCEEEEEEEeccCCccccccccCC
Confidence 589999999999999999875 4567888887654 257897652 11378999998888765331
Q ss_pred CCcceEEEeccCCCCCCCCC-CcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccccCCCCCCCCC
Q 040938 196 PNASFLIAARPYATGPASFD-NTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLATAKFPAKVPR 274 (487)
Q Consensus 196 ~~g~~~i~~~~~~~~~~~~~-~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~p~ 274 (487)
.-|.||-.++.........+ .....+.|...... ..
T Consensus 114 ~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~-------------------------------------------~~ 150 (313)
T 3tas_A 114 SAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG-------------------------------------------DV 150 (313)
T ss_dssp SCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTT-------------------------------------------CB
T ss_pred CceEEEEeecCcccccchhhhhccccCceEeeccc-------------------------------------------cc
Confidence 11566666553111000000 00122222222110 00
Q ss_pred CcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCCCCC
Q 040938 275 KVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGTPPS 354 (487)
Q Consensus 275 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 354 (487)
..|+.+.+.++ .|++|+..+.
T Consensus 151 ~~d~e~~l~~~--------------------d~t~Ng~~~~--------------------------------------- 171 (313)
T 3tas_A 151 LPDRTHTIVFN--------------------DMTINNRPAH--------------------------------------- 171 (313)
T ss_dssp CCSEEEEEEEE--------------------TTEETTCCTT---------------------------------------
T ss_pred cccccceeecc--------------------chhcccCCcc---------------------------------------
Confidence 12445544332 1567764331
Q ss_pred CcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcE
Q 040938 355 NIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGW 434 (487)
Q Consensus 355 ~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~ 434 (487)
....+.++.|++|+|+|.|.+ .+.|||||||+.|+|+..+... .....+.++||+.|.|++.
T Consensus 172 ------~~~~l~v~~Ge~vr~~liN~g---~~~hpfHlHGh~F~v~~~~~~~---------~~~~~~~~~Dtv~l~Pger 233 (313)
T 3tas_A 172 ------TGPDFEATVGDRVEFVMITHG---EYYHTFHLHGHRWADNRTGMLT---------GPDDPSQVIDNKICGPADS 233 (313)
T ss_dssp ------CCCCEEEETTCEEEEEEEEES---SCCEEEEETTCCEESSTTSSCC---------STTCCCCEESEEEECTTCE
T ss_pred ------cccccccccCCEEEEEEeccc---ccceeeeecCCeeEEEEECCcc---------CCCCCCeeeeEEEeCCCcc
Confidence 122367888999999999976 4789999999999998765221 1123467999999999998
Q ss_pred EEEEEEc---CCCeeEEEeecchhhhhccceEEEEEeCCCC
Q 040938 435 VAIRFLA---DNPGAWFMHCHLEVHTSWGLKMAWIVNDGKG 472 (487)
Q Consensus 435 ~~irf~~---dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~~ 472 (487)
..+++.+ +|||.|+||||+++|++.|||++|.|++++.
T Consensus 234 ~~v~v~a~~~~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~ 274 (313)
T 3tas_A 234 FGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 274 (313)
T ss_dssp EEEEEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTC
T ss_pred eEEEEEeccCCCCEeEEEEeCChHHHHCCCeEEEEEECCCC
Confidence 8887765 6999999999999999999999999997763
No 44
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.87 E-value=7.8e-24 Score=208.68 Aligned_cols=239 Identities=13% Similarity=0.108 Sum_probs=135.2
Q ss_pred EEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccc----eeEeeEEEeCCCce
Q 040938 109 FTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVK----PIKTKVVLITPGQT 184 (487)
Q Consensus 109 ~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~----P~~~~~l~l~pG~R 184 (487)
.++||.++ |+|++++|+++|+||.|... ..+.|+.+|..+. .+.||.+.. +.+.+...|.||||
T Consensus 52 ~~~n~~pG----------P~I~v~~Gd~v~v~~~N~l~-~~~siH~HGl~~~-~~~dG~~~~dg~~~~~~~~~~I~PG~~ 119 (306)
T 1sdd_A 52 SRTSGLLG----------PTLYAEVGDIMKVHFKNKAH-KPLSIHAQGIKYS-KFSEGASYSDHTLPMEKMDDAVAPGQE 119 (306)
T ss_dssp CSSCCSCC----------CCEEEETTCEEEEEEEECSS-SCBCCEEESSCCC-TTTSCCCSCCCCCHHHHTTTCBCTTCE
T ss_pred cccCCccC----------CEEEEeCCCEEEEEEEECCC-CcccEeecceecc-cccCCCccCCCCcccccCCCccCCCCe
Confidence 45787664 89999999999999999874 5677888777632 368998762 22333567999999
Q ss_pred EEEEEEecCCC-------CCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhh
Q 040938 185 TNVLLKAKHKS-------PNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFS 257 (487)
Q Consensus 185 ~dv~v~~~~~~-------~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~ 257 (487)
++..+++++.. .-|+||..++...... ....+.+ ++|.+........ +..... +. ++.
T Consensus 120 ~~Y~f~~~~~~gp~~~d~~~GT~wYHsH~~~~~q-~~~GL~G-~liV~~~~~~~~~--------~~~~~~-d~----e~~ 184 (306)
T 1sdd_A 120 YTYEWIISEHSGPTHDDPPCLTHIYYSYVNLVED-FNSGLIG-PLLICKKGTLTED--------GTQKMF-EK----QHV 184 (306)
T ss_dssp EEEEEECCGGGSCCSSSCSEEEEEEECCSSSHHH-HHTTCCE-EEEEECTTCBCTT--------SSBSSS-CC----CCC
T ss_pred EEEEEEeCCccCCCCCCCCceEEEEeccCCchhh-hccCceE-EEEEccCCCCCcc--------CCcCcc-cc----eEE
Confidence 99999997753 1169999987421000 0112223 3333322111000 000000 00 000
Q ss_pred hhhhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCC
Q 040938 258 KKIRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTD 337 (487)
Q Consensus 258 ~~~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~ 337 (487)
.-+. + +...... . ......++|||+.+..
T Consensus 185 l~~~---------------d----~d~~~~~----------~-~~~~~~~~ING~~~~~--------------------- 213 (306)
T 1sdd_A 185 LMFA---------------V----FDESKSW----------N-QTSSLMYTVNGYVNGT--------------------- 213 (306)
T ss_dssp CBCC---------------E----EETTSSS----------S-CCCCEEECSSSCCSSC---------------------
T ss_pred EEEE---------------e----ccccccc----------c-cCCCcceeeCCEecCC---------------------
Confidence 0000 0 0000000 0 0011246788765410
Q ss_pred CCCCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCC
Q 040938 338 FPANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFN 417 (487)
Q Consensus 338 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n 417 (487)
.+.+.++.|++++|.|.|.+. ....|+|||||+.|++ .|
T Consensus 214 ------------------------~p~l~v~~G~~vrlrliN~g~-~~~~h~~hlhG~~~~~----dG------------ 252 (306)
T 1sdd_A 214 ------------------------MPDITVCAHDHISWHLIGMSS-GPELFSIHFNGQVLEQ----NH------------ 252 (306)
T ss_dssp ------------------------CCCCCCCCC------BBCCCS-SSCEECCBCSSTTCEE----TT------------
T ss_pred ------------------------CcceEEcCCCEEEEEEEeCCC-CCccEEEEECCcEeee----CC------------
Confidence 012346679999999999763 2257999999999986 12
Q ss_pred CCCCCccceEEecCCcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCC
Q 040938 418 LVDPAERNTVGVPSGGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 418 ~~~p~~rDtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
.++||+.|.||+.+.|+|++++||.|+||||+++|++.|||++|.|.+.
T Consensus 253 ----~~~dtv~l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 253 ----HKISAITLVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp ----EECSCCCEETTCCBC--------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred ----EEcceEEECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 2699999999999999999999999999999999999999999999754
No 45
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.85 E-value=5.2e-21 Score=207.32 Aligned_cols=248 Identities=11% Similarity=0.148 Sum_probs=143.1
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccc---e-eEeeEEEeCCCceEEEEEEecCCC---CCc
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVK---P-IKTKVVLITPGQTTNVLLKAKHKS---PNA 198 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~---P-~~~~~l~l~pG~R~dv~v~~~~~~---~~g 198 (487)
.|+|++++|+++++||.|... ....||.+|.... .+.||.+.. | ..+....|.|||+++..+++++.. +.|
T Consensus 68 GP~I~~~~Gd~v~v~~~N~l~-~~~siH~HGl~~~-~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~gp~~~G 145 (647)
T 1sdd_B 68 GPVIRAEVDDVIQVRFKNLAS-RPYSLHAHGLSYE-KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSGPENPG 145 (647)
T ss_dssp CCCEEEETTCEEEEEECCCSS-SCBCCEEETCC----------------------CCBCTTCCEECCEECCTTTSCCSSS
T ss_pred CceEEEeCCCEEEEEEEECCC-CceEEecCcceeC-CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccCCCCCC
Confidence 489999999999999999986 4567888877654 578998752 2 233466799999999999998742 126
Q ss_pred ----ceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccc---cCCCCCC
Q 040938 199 ----SFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLA---TAKFPAK 271 (487)
Q Consensus 199 ----~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~---~~~~p~~ 271 (487)
.||..++...... ....+.+. +|........ . . +..+. .+.... .-+.... ...+.
T Consensus 146 ~~c~T~wYHsH~~~~~q-~~~GL~G~-lIV~~~~~~~------~-~-~~~~~-~~~e~~----l~l~~~d~~~~w~~~-- 208 (647)
T 1sdd_B 146 SACRAWAYYSAVNPEKD-IHSGLIGP-LLICRKGTLD------K-E-TNMPV-DMREFV----LLFMVFDEKKSWYYD-- 208 (647)
T ss_dssp CSEEEEEEECCSSHHHH-HTTTCEEE-EEEECTTSSC------T-T-SCCCS-SCCEEE----EEEEEEEGGGSSCCC--
T ss_pred CCceEEEEccCCCCccc-ccccCccC-EEEeeCCCcc------c-c-cCCCC-cceeEE----EEEEeecCccccccc--
Confidence 9999987521000 01122232 2323221100 0 0 00010 000000 0000000 00000
Q ss_pred CCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCccccCCCC
Q 040938 272 VPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFKFNYTGT 351 (487)
Q Consensus 272 ~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 351 (487)
. ..+..+.. .. . ........+.+||+.|.
T Consensus 209 --~--~~~~~~~~-~~-------~---~~~~~~~~~~iNG~~~~------------------------------------ 237 (647)
T 1sdd_B 209 --K--KPTRSWRR-AS-------S---EVKNSHEFHAINGMIYN------------------------------------ 237 (647)
T ss_dssp ------------------------------CCCEEEEETTBSSC------------------------------------
T ss_pred --c--Cccccccc-CC-------c---chhhcCceeccCCEecC------------------------------------
Confidence 0 00000000 00 0 00001123556664430
Q ss_pred CCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecC
Q 040938 352 PPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPS 431 (487)
Q Consensus 352 ~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~ 431 (487)
.+.+.++.|++|+|+|.|.+. ..+.|+||||||.|+|++.. +.++||+.|.|
T Consensus 238 ----------~p~l~v~~G~~vrlrliN~~~-~~~~h~~hlhG~~f~vi~~d-----------------~~~~d~v~l~p 289 (647)
T 1sdd_B 238 ----------LPGLRMYEQEWVRLHLLNLGG-SRDIHVVHFHGQTLLENGTQ-----------------QHQLGVWPLLP 289 (647)
T ss_dssp ----------CCCCEEETTCEEEEEEEECCC-TTCCEEEEETTCCEEECSSS-----------------CEEESSEEECT
T ss_pred ----------CCCeEEcCCCEEEEEEEeCCC-CCcceeEEEcCcEEEEecCC-----------------CcccceEEECC
Confidence 123567889999999999763 23589999999999998642 34899999999
Q ss_pred CcEEEEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 432 GGWVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 432 ~~~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
|+++.|+|++++||.|+||||+++|++.|||++|.|.+.+
T Consensus 290 g~r~~v~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~~~ 329 (647)
T 1sdd_B 290 GSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLIVDRE 329 (647)
T ss_dssp TEEEEEEEECCSSEEEEEECCCHHHHTTTCEEEEEEECTT
T ss_pred CeEEEEEEEeccceEeecccCcccccccccccceeeeccc
Confidence 9999999999999999999999999999999999997543
No 46
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=99.83 E-value=1.1e-19 Score=180.72 Aligned_cols=249 Identities=17% Similarity=0.152 Sum_probs=157.8
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCC-ceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALN-DELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..+++||+.. .|+|+|++|+++|+|++|.... ..+.++++|.. +.||.... ..|.|||++
T Consensus 59 ~~~~~ng~~p---------gP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~----~~dG~~~~------~~i~PG~~~ 119 (327)
T 1kbv_A 59 RYWTFDGDVP---------GRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAAT----GQGGGAAA------TFTAPGRTS 119 (327)
T ss_dssp EEEEETTBSS---------CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGTTT------TCBCTTEEE
T ss_pred EEEEECCccC---------CCeEEEeCCCEEEEEEEECCCCCCceeeEeCccc----cCCCCCcc------eeecCCCEE
Confidence 5789999842 4899999999999999999753 46778887753 67887532 248999999
Q ss_pred EEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhcccc
Q 040938 186 NVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLAT 265 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~ 265 (487)
++.++++++ |.||.+++........... ..+.+.+.... .+ | .. |.... .-+.....
T Consensus 120 ~y~f~~~~~---Gt~wyH~h~~~~~~~~~~G--l~G~~iV~~~~---------~~-p---~~-d~e~~----l~~~d~~~ 176 (327)
T 1kbv_A 120 TFSFKALQP---GLYIYHCAVAPVGMHIANG--MYGLILVEPKE---------GL-P---KV-DKEFY----IVQGDFYT 176 (327)
T ss_dssp EEEEECCSC---EEEEEECCCSSHHHHHHTT--CEEEEEEECTT---------CC-C---CC-SEEEE----EEEEEECB
T ss_pred EEEEECCCC---eEEEEEeCCCChhhhhhcc--eEEEEEEecCC---------CC-C---CC-ceEEE----EEeeeeec
Confidence 999999885 9999998742100000111 22333333221 01 1 00 00000 00000000
Q ss_pred CCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCcc
Q 040938 266 AKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPFK 345 (487)
Q Consensus 266 ~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 345 (487)
.. ... ..... ....... .+..+ ..+.+||+.+..
T Consensus 177 ~~----~~~-~~g~~--~~~~~~~--------~~~~~--~~~~iNG~~~~~----------------------------- 210 (327)
T 1kbv_A 177 KG----KKG-AQGLQ--PFDMDKA--------VAEQP--EYVVFNGHVGAL----------------------------- 210 (327)
T ss_dssp SS----CTT-CCEEE--CBCHHHH--------HHTCC--SEEEETTSTTTT-----------------------------
T ss_pred cC----ccc-ccccc--ccChhHh--------ccCCC--ceEEEcCcccCC-----------------------------
Confidence 00 000 00000 0000000 00001 134566644310
Q ss_pred ccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccc
Q 040938 346 FNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERN 425 (487)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rD 425 (487)
+ ....+.++.|++++|.|.|.+. ...|+||||||.|+||+...+. .+|.++|
T Consensus 211 -------------~-~~~~l~v~~G~~vRlRliN~~~--~~~~~~~l~Gh~f~vi~~DG~~------------~~p~~~d 262 (327)
T 1kbv_A 211 -------------T-GDNALKAKAGETVRMYVGNGGP--NLVSSFHVIGEIFDKVYVEGGK------------LINENVQ 262 (327)
T ss_dssp -------------S-GGGCEEEETTEEEEEEEEEEES--SCCEEEEEETCCBSEEEGGGSS------------CEECSBS
T ss_pred -------------C-CceeEEeCCCCEEEEEEECCCC--CCceeEEEeCCEEEEEEcCCCc------------CCCCcee
Confidence 0 0135688899999999999763 4689999999999999986431 2367899
Q ss_pred eEEecCCcEEEEEEEcCCCeeEEEeecchhhh-hccceEEEEEeCCC
Q 040938 426 TVGVPSGGWVAIRFLADNPGAWFMHCHLEVHT-SWGLKMAWIVNDGK 471 (487)
Q Consensus 426 tv~v~~~~~~~irf~~dnpG~w~~HCHi~~H~-~~GM~~~~~V~~~~ 471 (487)
++.|.||+.+.|.|++++||.|++|||+.+|. ..||++.+.|+...
T Consensus 263 ~l~l~pGer~dv~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 263 STIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEECTTEEEEEEEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEECCCCEEEEEEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 99999999999999999999999999999995 89999999997654
No 47
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=99.83 E-value=2.7e-19 Score=179.11 Aligned_cols=93 Identities=20% Similarity=0.265 Sum_probs=77.6
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCC--ccceEEecCCcEEEEEEE
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPA--ERNTVGVPSGGWVAIRFL 440 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~--~rDtv~v~~~~~~~irf~ 440 (487)
..+.++.|++++|++.|.+ ...|++|+|||.|+|++. |.+ .+++ ++||+.|.+|+.+.|.|+
T Consensus 231 ~~l~v~~G~r~Rl~n~~~~---~~~~~~~i~gh~~~Vi~d--G~~-----------~~~p~~~~dtv~l~pGer~~v~v~ 294 (340)
T 2bw4_A 231 HALTAAVGERVLVVHSQAN---RDTRPHLIGGHGDYVWAT--GKF-----------RNPPDLDQETWLIPGGTAGAAFYT 294 (340)
T ss_dssp GCEEEETTCEEEEEEEESS---SCBCEEEETCCEEEEETT--CCT-----------TSCCEEEESCCCBCTTEEEEEEEE
T ss_pred CceEcCCCCEEEEEECCCC---CccceEEecCcceEEeCC--Ccc-----------cCCccccceEEEeCCCceEEEEEE
Confidence 4578889999998887754 467888999999999863 321 1222 579999999999999999
Q ss_pred cCCCeeEEEeecch-hhhhccceEEEEEeCCC
Q 040938 441 ADNPGAWFMHCHLE-VHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 441 ~dnpG~w~~HCHi~-~H~~~GM~~~~~V~~~~ 471 (487)
+++||.|+||||++ +|++.|||+.|.|....
T Consensus 295 ~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 295 FRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp CCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred CCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 99999999999999 59999999999998654
No 48
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=99.79 E-value=1.6e-17 Score=165.60 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=73.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCC-ccceEEecCCcEEEEEEEcC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPA-ERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~-~rDtv~v~~~~~~~irf~~d 442 (487)
.+.++.|++++|++.|.+ ...|++++|+|.|.|++. |.+- ..|. ++||+.|.||+.+.|.|.++
T Consensus 226 ~l~v~~Ger~Rl~n~~~~---~~~~~h~i~~h~~~Vi~d--G~~~----------~~p~~~~dtv~l~pGer~~v~v~a~ 290 (333)
T 1mzy_A 226 ALKAKVGDNVLFVHSQPN---RDSRPHLIGGHGDLVWET--GKFH----------NAPERDLETWFIRGGTAGAALYKFL 290 (333)
T ss_dssp CEEEETTCEEEEEEEESS---SCBCEEEETCCEEEEETT--CCTT----------SCCEEEESBCCBCTTEEEEEEEECC
T ss_pred ceEecCCCEEEEEECCCC---CccccEEECCCCeEEEeC--Cccc----------CCCccCcceEEECCCceEEEEEEcC
Confidence 478889999999887753 233444467788888862 4321 1122 68999999999999999999
Q ss_pred CCeeEEEeecchhhh-hccceEEEEEeCCC
Q 040938 443 NPGAWFMHCHLEVHT-SWGLKMAWIVNDGK 471 (487)
Q Consensus 443 npG~w~~HCHi~~H~-~~GM~~~~~V~~~~ 471 (487)
+||.|+||||++.|+ +.|||+.|.|....
T Consensus 291 ~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 291 QPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp SCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred CCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 999999999999997 99999999998654
No 49
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.78 E-value=2.9e-20 Score=203.12 Aligned_cols=87 Identities=15% Similarity=0.333 Sum_probs=77.3
Q ss_pred EEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCC
Q 040938 365 VALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNP 444 (487)
Q Consensus 365 ~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnp 444 (487)
+.++.|++|+|+|+|.+. ..+.||||||||.|+|++.+ +.++||+.|.||+++.|+|++|+|
T Consensus 370 l~v~~Ge~vr~rliN~g~-~~~~H~fHlhGh~f~Vv~~d-----------------g~~~Dtv~l~Pg~~~~v~~~ad~p 431 (770)
T 2r7e_B 370 LVMAQDQRIRWYLLSMGS-NENIHSIHFSGHVFTVRKKE-----------------EYKMALYNLYPGVFETVEMLPSKA 431 (770)
T ss_dssp CCCCSSSCEEEECCCCCS-SSCCCEEEBSSCCEECCSSS-----------------CCEESEEECCTTCCCEEEECCSSC
T ss_pred eEEeCCCEEEEEEEeCCC-CcceEEEEEcCCEEEEEecC-----------------CceeeEEEECCCeEEEEEEEeCCC
Confidence 467789999999999763 23589999999999998763 128999999999999999999999
Q ss_pred eeEEEeecchhhhhccceEEEEEeC
Q 040938 445 GAWFMHCHLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 445 G~w~~HCHi~~H~~~GM~~~~~V~~ 469 (487)
|.|+||||+++|++.|||+.|.|..
T Consensus 432 G~w~~hcH~~~H~~~GM~~~~~V~s 456 (770)
T 2r7e_B 432 GIWRVECLIGEHLHAGMSTLFLVYS 456 (770)
T ss_dssp BCCCBCCCSHHHHTTBCCCCCCBCC
T ss_pred CceEEEecccccccccccccccccc
Confidence 9999999999999999999999853
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=99.74 E-value=1.7e-16 Score=158.50 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCC--ccceEEecCCcEEEEEEE
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPA--ERNTVGVPSGGWVAIRFL 440 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~--~rDtv~v~~~~~~~irf~ 440 (487)
..+.++.|++++|+..+.+ ...+++++|||.|.|+. .|.+ .+|+ +.||+.|.+|+...|.+.
T Consensus 225 ~~l~v~~GervRlin~~~~---~~~~~~~i~gh~~~Vi~--DG~~-----------~~p~~~~~dtv~i~pGer~dvlv~ 288 (336)
T 1oe1_A 225 NALTAKVGETVLLIHSQAN---RDTRPHLIGGHGDWVWE--TGKF-----------ANPPQRDLETWFIRGGSAGAALYT 288 (336)
T ss_dssp GCEEEETTCEEEEEEEESS---SCBCEEETTCCEEEEET--TCCT-----------TSCCEEEESBCCBCTTEEEEEEEE
T ss_pred cceEcCCCCEEEEEecCCC---CccceEEECCcCceEeC--CCcC-----------cCCccccceEEEECCCCcEEEEEE
Confidence 4678899999998766543 34456667999999985 3421 1232 579999999999999999
Q ss_pred cCCCeeEEEeecchhhh-hccceEEEEEeCCCCC-CCCCCCCCCCCC
Q 040938 441 ADNPGAWFMHCHLEVHT-SWGLKMAWIVNDGKGP-KQKLPPPPSDLP 485 (487)
Q Consensus 441 ~dnpG~w~~HCHi~~H~-~~GM~~~~~V~~~~~~-~~~~~~~p~~~~ 485 (487)
+++||.|+||||.+.|. +.||++.|.|+..... .-.....|.-+|
T Consensus 289 ~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~~~~~~~~~~~~~~~ 335 (336)
T 1oe1_A 289 FKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWNDDLMKQIKAPAPIP 335 (336)
T ss_dssp CCSCEEEEEEESSHHHHHTTSCEEEEEEESCCCTTTCCCSSCSCCCC
T ss_pred cCCCceEEEEechhhccccCCCeEEEEECCCCChHHhccCCCCCCCC
Confidence 99999999999999985 9999999999865422 113344455544
No 51
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=99.73 E-value=6.6e-17 Score=167.50 Aligned_cols=250 Identities=13% Similarity=0.113 Sum_probs=158.4
Q ss_pred CCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCC-ceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCce
Q 040938 106 SDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALN-DELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQT 184 (487)
Q Consensus 106 ~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R 184 (487)
...+++||+.. .|+|+++.|+++++||.|.... ....+|++|+. ..||.... ..|.||++
T Consensus 48 ~~~~~~ng~~p---------gp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~----~~dG~~~~------~~i~pg~~ 108 (442)
T 2zoo_A 48 YVFWSFGETVP---------GSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVT----GPGGGAES------SFTAPGHT 108 (442)
T ss_dssp EEEEEETTBSS---------CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCC----SGGGGGGG------CCBCTTCE
T ss_pred EEEEEECCcCC---------CCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCc----CCCCCCcc------EEECCCCE
Confidence 35789999852 4899999999999999999642 56788998864 46886431 25899999
Q ss_pred EEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhhccc
Q 040938 185 TNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIRSLA 264 (487)
Q Consensus 185 ~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 264 (487)
+++.++++++ |.||..++.......... ...+.|.+.... .+ | .+ |.. +..-+....
T Consensus 109 ~~y~f~~~~~---Gt~~yH~H~~~~~~~~~~--Gl~G~~iv~~~~---------~~-~---~~-d~e----~~l~l~d~~ 165 (442)
T 2zoo_A 109 STFNFKALNP---GLYIYHCATAPVGMHIAN--GMYGLILVEPKE---------GL-A---PV-DRE----YYLVQGDFY 165 (442)
T ss_dssp EEEEEECCSC---EEEEEECCCSSHHHHHHT--TCEEEEEEECTT---------CC-C---CC-SEE----EEEEEEEEC
T ss_pred EEEEEEcCCC---eEEEEecCCCChHHHHhC--ccEEEEEEeCCC---------CC-C---CC-Cce----EEEEeeeee
Confidence 9999999875 999999853110000001 233444444321 01 1 00 000 000000000
Q ss_pred cCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCCCCc
Q 040938 265 TAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPANPPF 344 (487)
Q Consensus 265 ~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~ 344 (487)
... .. .......+..... . ....-.+.|||+.+..
T Consensus 166 ~~~---~~----~~~~~~~~~~~~~--------~--~~~~~~~liNG~~~~~---------------------------- 200 (442)
T 2zoo_A 166 TKG---EF----GEAGLQPFDMAKA--------I--DEDADYVVFNGSVGST---------------------------- 200 (442)
T ss_dssp BSS---CT----TCCEEECBCHHHH--------H--TTCCSEEEETTSTTTT----------------------------
T ss_pred ccC---cc----cccccccCChhHh--------c--cCCCCEEEECCCcCCC----------------------------
Confidence 000 00 0000000000000 0 0000124566543210
Q ss_pred cccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 040938 345 KFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAER 424 (487)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~r 424 (487)
.....+.++.|++++|.|.|.+. ...|+||+||+.|.|++...+. ..|.+.
T Consensus 201 ---------------~~~~~l~v~~G~~vrlrliN~~~--~~~~~~~i~g~~~~vi~~DG~~------------~~p~~~ 251 (442)
T 2zoo_A 201 ---------------TDENSLTAKVGETVRLYIGNGGP--NLVSSFHVIGEIFDTVYVEGGS------------LKNHNV 251 (442)
T ss_dssp ---------------SGGGCEEEETTCEEEEEEEEEES--SCCEEEEEETCCBSEEEGGGSS------------CEECSB
T ss_pred ---------------CCCCceEeCCCCEEEEEEEeCCC--CCceeeEEcCCEEEEEecCCcc------------CCCccc
Confidence 00134678899999999999753 4689999999999999985331 226789
Q ss_pred ceEEecCCcEEEEEEEcCCCeeEEEeecchhh-hhccceEEEEEeCCC
Q 040938 425 NTVGVPSGGWVAIRFLADNPGAWFMHCHLEVH-TSWGLKMAWIVNDGK 471 (487)
Q Consensus 425 Dtv~v~~~~~~~irf~~dnpG~w~~HCHi~~H-~~~GM~~~~~V~~~~ 471 (487)
|++.|.||+...|.|+++++|.|++|||...| .+.||++.|.|....
T Consensus 252 ~~~~l~pg~r~~v~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 252 QTTLIPAGGAAIVEFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp SEEEECTTEEEEEEEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred eEEEECCCeeEEEEEEcCCCCeEEEEecccccccccCceEEEEecCCC
Confidence 99999999999999999999999999999999 599999999998665
No 52
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.16 E-value=6.2e-11 Score=102.45 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=71.2
Q ss_pred EEEecCCCEEEEEEeeCCCCCCC-CCCeeecCCceEEE--------EecC-CCCCCCCCCCCCCCCCCCccceEEecCCc
Q 040938 364 AVALPFNASVEVVMQDTSIIGAE-SHPLHLHGFNFFVV--------GQGF-GNFDPSKDPAKFNLVDPAERNTVGVPSGG 433 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~-~HP~HlHg~~f~Vl--------~~g~-g~~~~~~~~~~~n~~~p~~rDtv~v~~~~ 433 (487)
.+.++.|++|+|+|.|.+ .+ .|.||+|+....+. ..+. ..+.+.. ....++|+..|.||+
T Consensus 36 ~i~v~~G~~V~~~~~N~~---~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~-------~~~~~~~t~~l~pGe 105 (139)
T 2aan_A 36 ELTVSAGQTVTIRFKNNS---AVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPAD-------KSNIIAESPLANGNE 105 (139)
T ss_dssp EEEECTTCEEEEEEECCC---SSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSC-------CTTEEEECCCBCTTC
T ss_pred eEEECCCCEEEEEEEeCC---CCCCeeEEEeccccccchhhhhhhhcccccccccCcc-------cccccccccccCCCC
Confidence 578999999999999975 36 89999998643110 0000 0111110 123478999999999
Q ss_pred EEEEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 434 WVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 434 ~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
...|.|.+++||.|.||||+..|.+ ||++.+.|+
T Consensus 106 t~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 106 TVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp EEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred EEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 9999999999999999999999999 999999884
No 53
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.16 E-value=8.6e-11 Score=96.26 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=65.4
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc-C
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA-D 442 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~-d 442 (487)
.+.++.|++|+|+ |.+ ...|++|+||..+... .|. + .+....++..+.||+...++|.+ +
T Consensus 20 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~~~~---~g~-~----------~~~~~~~~~~i~pG~~~~~~f~~~~ 80 (105)
T 3cvb_A 20 NVTVHPGDTVKWV--NNK---LPPHNILFDDKQVPGA---SKE-L----------ADKLSHSQLMFSPGESYEITFSSDF 80 (105)
T ss_dssp EEEECTTEEEEEE--ECS---SCCEEEEECTTSSGGG---CHH-H----------HHHHCEEEEECSTTCEEEEEECTTS
T ss_pred EEEEcCCCEEEEE--ECC---CCCCeEEEeCCCCCcc---ccc-c----------cccccccccccCCCCeEEEEEecCC
Confidence 5789999999874 653 4789999999865331 000 0 00012578899999999999998 8
Q ss_pred CCeeEEEeecchhhhhccceEEEEEeC
Q 040938 443 NPGAWFMHCHLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 443 npG~w~~HCHi~~H~~~GM~~~~~V~~ 469 (487)
.||.|.|||| .|...||++.+.|++
T Consensus 81 ~~G~y~y~C~--~H~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 81 PAGTYTYYCA--PHRGAGMVGKITVEG 105 (105)
T ss_dssp CSEEEEEECT--TTGGGTCEEEEEECC
T ss_pred CCeeEEEEeC--CchhcCCEEEEEEcC
Confidence 9999999999 799999999999853
No 54
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=98.91 E-value=1.1e-08 Score=105.56 Aligned_cols=161 Identities=12% Similarity=0.139 Sum_probs=103.1
Q ss_pred CCCCCC-----cccccCCCCCeEEEEEEeCCCccceeeccccccccccc-ee-----------eE-EEeCCCCC-----C
Q 040938 11 ADGPAY-----ITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATL-YG-----------PI-VILPKRHA-----S 67 (487)
Q Consensus 11 ~DGv~~-----vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl-~G-----------~l-iV~~~~~~-----~ 67 (487)
.||.+- +++..|.||++++..+++ .+.|+||++++......|+ .| ++ -+...... .
T Consensus 230 ~DG~~~~~P~~~~~l~l~pgeR~dvlv~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~ 308 (451)
T 2uxt_A 230 GDQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDS 308 (451)
T ss_dssp CSSSEEEEEEEESSEEECTTCEEEEEEEC-TTCCCEEEEC----------------CCCCSCCEEEEEEECSCCC----C
T ss_pred eCCCccCCceEeceEEECceeEEEEEEEe-CCCCEEEEEecCccccccccccccccCCCCCCcceEEEEecCCCcCcccc
Confidence 688642 567889999999999998 5789999999875432221 11 11 11111100 0
Q ss_pred CCC-----CC----CCcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEE
Q 040938 68 YPF-----PQ----PFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYL 138 (487)
Q Consensus 68 ~~~-----~~----~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~r 138 (487)
.|. +. .+.++.+.|+ ..++|||+.+.. ..+.+.++.|++++
T Consensus 309 ~p~~L~~~~~~~~~~~~~~~~~l~------------------------~~~~iNg~~f~~------~~~~~~~~~G~~~~ 358 (451)
T 2uxt_A 309 LPMRLLPTEIMAGSPIRSRDISLG------------------------DDPGINGQLWDV------NRIDVTAQQGTWER 358 (451)
T ss_dssp CCSCSSSSCCCCCCCSEEEEEEEC------------------------SSSSBTTBCCCT------TCCCEEEETTCEEE
T ss_pred CccccCCCCCCCCCCcceEEEEEe------------------------eEEEECCEeCCC------CCCcEEcCCCCEEE
Confidence 000 00 0000001000 034688886421 23568999999999
Q ss_pred EEEEecCCCceEEEEEcCceEEEEEecCccc---ceeEeeEEEeCCCceEEEEEEecCCC-CCcceEEEeccC
Q 040938 139 LRMINAALNDELFFSIANHTLTVVETDAVYV---KPIKTKVVLITPGQTTNVLLKAKHKS-PNASFLIAARPY 207 (487)
Q Consensus 139 lR~iN~~~~~~~~~~i~~h~~~via~DG~~v---~P~~~~~l~l~pG~R~dv~v~~~~~~-~~g~~~i~~~~~ 207 (487)
|+|+|. ..+.|||+||.|+|++.||.++ +|...|++.| |+++.|.++++++. ..|.|.+.|+..
T Consensus 359 ~~l~N~---~~HP~HLHGh~F~Vl~~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~dnpg~~~g~w~~HCHil 426 (451)
T 2uxt_A 359 WTVRAD---EPQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWV--DGQVELLVYFGQPSWAHFPFYFNSQTL 426 (451)
T ss_dssp EEEEEE---EEEEEEETTCEEEEEEETTBCCCGGGSSCBSEEEE--EEEEEEEEECCSCCBTTBCEEEEESSH
T ss_pred EEEECC---CCcCeEECCceEEEEeeCCcCCCcccCCCccEEEE--CCEEEEEEEeCCCCCCCCceEEeCCch
Confidence 999998 4689999999999999999876 4778899999 99999999998861 013399999853
No 55
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.89 E-value=4.6e-09 Score=86.03 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=62.6
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCC-CccceEEecCCcEEEEEEEc-
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDP-AERNTVGVPSGGWVAIRFLA- 441 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p-~~rDtv~v~~~~~~~irf~~- 441 (487)
.+.++.|++|+|+ |.+ ...|+||+|+..+.. . .|. ..+ ..+|++.+.||+...+.|.+
T Consensus 21 ~i~v~~Gd~V~~~--n~~---~~~H~~~~~~~~~~~-~--~g~------------~~~~~~~~~~~~~pG~~~~~~f~~~ 80 (106)
T 2gim_A 21 KLTIKPGDTVEFL--NNK---VPPHNVVFDAALNPA-K--SAD------------LAKSLSHKQLLMSPGQSTSTTFPAD 80 (106)
T ss_dssp EEEECTTCEEEEE--ECS---SSCCCBEECSSSSTT-C--CHH------------HHHHHCBCSCCCSTTCEEEEECCTT
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEEeCCCCcc-c--ccc------------cchhccccceeeCCCCEEEEEEecC
Confidence 5788999999986 643 368999999764310 0 000 000 01467788999999999988
Q ss_pred CCCeeEEEeecchhhhhccceEEEEEe
Q 040938 442 DNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 442 dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
+.||.|.|||| .|.+.||++.+.|+
T Consensus 81 ~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 81 APAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 89999999999 89999999999985
No 56
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=98.82 E-value=8.4e-08 Score=101.69 Aligned_cols=253 Identities=11% Similarity=0.103 Sum_probs=144.8
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEE-EecCcccceeEeeEEEeCCCceE
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVV-ETDAVYVKPIKTKVVLITPGQTT 185 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~vi-a~DG~~v~P~~~~~l~l~pG~R~ 185 (487)
..+++||+.. .|+|++++|+++++++.|........+|.+|..+.-- ..||.+-. ..-.|.||+++
T Consensus 23 ~~~~~Ng~~P---------GP~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~v----tq~~I~PG~s~ 89 (552)
T 1aoz_A 23 IVMGINGQFP---------GPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASI----SQCAINPGETF 89 (552)
T ss_dssp EEEEETTBSS---------CCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTT----TBCCBCTTCEE
T ss_pred EEEEECCccC---------CCcEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCccc----ccCCcCCCCeE
Confidence 5789999852 4899999999999999999874567788887543211 15887631 12347899999
Q ss_pred EEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhh-hh-----hhhh
Q 040938 186 NVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFA-MQ-----FSKK 259 (487)
Q Consensus 186 dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~-~~-----~~~~ 259 (487)
...+++++. |.||-.++... . ..+ ...+.|......... . .. +.-.+.... .+ ....
T Consensus 90 tY~f~~~~~---GT~wYHsH~~~--q-~~~--Gl~G~liV~~~~~~~----~-~~----~~d~e~~l~l~Dw~~~~~~~~ 152 (552)
T 1aoz_A 90 FYNFTVDNP---GTFFYHGHLGM--Q-RSA--GLYGSLIVDPPQGKK----E-PF----HYDGEINLLLSDWWHQSIHKQ 152 (552)
T ss_dssp EEEEECCSC---EEEEEEECSTT--T-GGG--TCEEEEEEECCTTCC----C-SS----CCSEEEEEEEEEECSSCHHHH
T ss_pred EEEEECCCC---EEEEEEECchh--H-Hhc--cCeeeEEEeCCcccC----C-CC----CCCccceEEeecccCCCHHHH
Confidence 999999654 99999998521 1 112 233334343321100 0 01 000000000 00 0000
Q ss_pred hhccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCC
Q 040938 260 IRSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFP 339 (487)
Q Consensus 260 ~~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~ 339 (487)
+..+... + . +..+..-...|||+....- .+... +. +
T Consensus 153 ~~~~~~~------~------------~------------~~~~~~~~~liNG~~~~~c--~~~~~-~~----~------- 188 (552)
T 1aoz_A 153 EVGLSSK------P------------I------------RWIGEPQTILLNGRGQFDC--SIAAK-YD----S------- 188 (552)
T ss_dssp HHHTTSS------S------------C------------CCCCSCSEEEETTBCCSSS--BTTGG-GC----T-------
T ss_pred Hhhhhcc------c------------c------------cCCCCCCeEEECCccccCc--ccCcc-cc----c-------
Confidence 0000000 0 0 0001111246888653100 00000 00 0
Q ss_pred CCCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCC
Q 040938 340 ANPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLV 419 (487)
Q Consensus 340 ~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~ 419 (487)
....+..+++ .......+.++.|++++|.|+|.+. ...+-|||+||.|+||+...+ +.
T Consensus 189 --~~~~c~~~~~------~~~~~~~~~v~~G~~~RlRliNa~~--~~~~~~~i~gh~~~vi~~DG~------------~~ 246 (552)
T 1aoz_A 189 --NLEPCKLKGS------ESCAPYIFHVSPKKTYRIRIASTTA--LAALNFAIGNHQLLVVEADGN------------YV 246 (552)
T ss_dssp --TSCBCCCCSC------STTSCCCEEECTTCEEEEEEEECCS--SCEEEEEETTCCEEEEEETTE------------EE
T ss_pred --ccccccccCC------CCCCceEEEEcCCCEEEEEEEcccc--cceEEEEEcCcEEEEEEECCc------------cc
Confidence 0000000000 0001126889999999999999864 456899999999999998532 12
Q ss_pred CCCccceEEecCCcEEEEEEEcCC--CeeEEEeecchh
Q 040938 420 DPAERNTVGVPSGGWVAIRFLADN--PGAWFMHCHLEV 455 (487)
Q Consensus 420 ~p~~rDtv~v~~~~~~~irf~~dn--pG~w~~HCHi~~ 455 (487)
.|...|++.|.+|+...|.+++++ +|.|.++|+...
T Consensus 247 ~P~~~~~l~i~pgqR~dvlv~~~~~~~g~y~i~~~~~~ 284 (552)
T 1aoz_A 247 QPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRA 284 (552)
T ss_dssp EEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEES
T ss_pred CceEEeEEEEcCCcEEEEEEEcCCCCCCCEEEEEEccc
Confidence 466789999999999999999943 799999999764
No 57
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.78 E-value=2.9e-09 Score=87.07 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=38.3
Q ss_pred cccccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeC
Q 040938 17 ITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 17 vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
.+++.|.||++++|+|++++++|+||||||.| ..+||.|.|+|++
T Consensus 61 ~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~~H-~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 61 HSQLMFSPGESYEITFSSDFPAGTYTYYCAPH-RGAGMVGKITVEG 105 (105)
T ss_dssp EEEEECSTTCEEEEEECTTSCSEEEEEECTTT-GGGTCEEEEEECC
T ss_pred ccccccCCCCeEEEEEecCCCCeeEEEEeCCc-hhcCCEEEEEEcC
Confidence 46788999999999998657899999999943 3479999999974
No 58
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=98.77 E-value=1.5e-08 Score=87.40 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=70.6
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCC--ceEEE-Eec--CC---CCCCCCCCCCCCCCCCCccceEEecCCcEE
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGF--NFFVV-GQG--FG---NFDPSKDPAKFNLVDPAERNTVGVPSGGWV 435 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~--~f~Vl-~~g--~g---~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~ 435 (487)
.+.++.|++|+|++.|.+. +.+.|.||++.. .+.-+ ..+ .+ .|-+..+ ....+++|..|.+|...
T Consensus 34 ~i~v~~G~tV~~~~~N~~~-~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~t~~l~pG~~~ 106 (140)
T 1qhq_A 34 SLSLPANTVVRLDFVNQNN-LGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPD------TPNALAWTAMLNAGESG 106 (140)
T ss_dssp EEEEETTCEEEEEEEECCS-SCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTT------CTTEEEECCCBCTTEEE
T ss_pred eEEECCCCEEEEEEECCCC-CCCceeEEEeccCcchhhhhhhhhhhcccccccCccc------cccccccceeeCCCcee
Confidence 4788999999999999321 258899999853 12100 000 00 0100000 01236789999999999
Q ss_pred EEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 436 AIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 436 ~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
.+.|.++.||.|.|||++..|...||.+.+.|.
T Consensus 107 ~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 107 SVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp EEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred EEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 999999999999999999999999999999985
No 59
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=98.76 E-value=2e-07 Score=95.92 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=76.8
Q ss_pred eEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCccc-ceeEeeEEEeCCCceEE
Q 040938 108 AFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYV-KPIKTKVVLITPGQTTN 186 (487)
Q Consensus 108 ~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v-~P~~~~~l~l~pG~R~d 186 (487)
.+.|||+.+. . ..+.+.++.|++++|+|.|.+. ..+.|||+||.|+|++.+|... .|...|++.|.||+++.
T Consensus 335 ~~~iNg~~~~---~---~~~~~~~~~g~~~~~~~~N~~~-~~HP~HLHG~~F~Vl~~~g~~~~~p~~rDTv~v~p~~~v~ 407 (439)
T 2xu9_A 335 RFFINGQVFD---H---RRVDLKGQAQTVEVWEVENQGD-MDHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVAR 407 (439)
T ss_dssp EEEETTBCCC---T---TCCCEEECTTCEEEEEEEECSS-SCEEEEESSCCBEEEEETTEECSSCCCBSEEEECTTCEEE
T ss_pred eEeECCEECC---C---CCCceecCCCCEEEEEEEcCCC-CCCCceeCCCcEEEEeeCCCCCCCCCCeEEEEeCCCCEEE
Confidence 6789998742 1 1245899999999999999974 5689999999999999999877 58889999999999999
Q ss_pred EEEEecCCCCCcceEEEecc
Q 040938 187 VLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 187 v~v~~~~~~~~g~~~i~~~~ 206 (487)
|.++++.+ |.|.+.|+.
T Consensus 408 i~f~adnp---G~w~~HCHi 424 (439)
T 2xu9_A 408 LLVPLREK---GRTVFHCHI 424 (439)
T ss_dssp EEEECCSC---EEEEEEESS
T ss_pred EEEEcCCC---CCEEEECCc
Confidence 99998776 999999985
No 60
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=98.74 E-value=4.4e-07 Score=94.63 Aligned_cols=235 Identities=13% Similarity=0.141 Sum_probs=142.6
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCC----ceEEEEEcCceEE-EEEecCcccceeEeeEEEeCC
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALN----DELFFSIANHTLT-VVETDAVYVKPIKTKVVLITP 181 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~----~~~~~~i~~h~~~-via~DG~~v~P~~~~~l~l~p 181 (487)
..+++||+. ..|+|+++.|+++++++.|.... ....+|.+|..+. --..||.+-- ..-.|.|
T Consensus 23 ~~~~~NG~~---------PGP~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~v----tq~pI~P 89 (499)
T 3pxl_A 23 QAVVVNGVT---------PGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFI----NQCPISP 89 (499)
T ss_dssp EEEEETTBS---------SCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTT----TBCCBCT
T ss_pred EEEEECCcc---------cCCeEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCcc----ccCCCCC
Confidence 578999985 25899999999999999999864 3567888776542 1357887531 1124899
Q ss_pred CceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhh
Q 040938 182 GQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIR 261 (487)
Q Consensus 182 G~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 261 (487)
|+.+.-.+++.+.+ |+||-.++.... ..+ ...+.|....... + . +......+.
T Consensus 90 G~s~tY~f~~~~~~--GT~wYHsH~~~q---~~~--GL~G~lIV~~~~~-------~-~-~~~~~~d~~----------- 142 (499)
T 3pxl_A 90 GHSFLYDFQVPDQA--GTFWYHSHLSTQ---YCD--GLRGPFVVYDPND-------P-H-ASRYDVDND----------- 142 (499)
T ss_dssp TCEEEEEEECSSCC--EEEEEEECSTTG---GGG--TCEEEEEEECTTC-------T-T-GGGCSBCSG-----------
T ss_pred CCeEEEEEEcCCCC--ceeeeeccchhH---Hhc--cceeEEEEcCCcc-------c-c-cccCCCCCc-----------
Confidence 99999999996555 999999986211 011 2333343332210 0 0 000000000
Q ss_pred ccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCC
Q 040938 262 SLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPAN 341 (487)
Q Consensus 262 ~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 341 (487)
+..+.+. +....... .....+. ..-...|||+.... +.
T Consensus 143 ---------------~~~l~l~-Dw~~~~~~--~~~~~p~-~~d~~liNG~~~~~------------------~~----- 180 (499)
T 3pxl_A 143 ---------------DTVITLA-DWYHTAAK--LGPRFPG-GADATLINGKGRAP------------------SD----- 180 (499)
T ss_dssp ---------------GGEEEEE-EECSSCTT--TSCSSCS-SCSEEEETTBCCCT------------------TC-----
T ss_pred ---------------eEEEEEE-cccCCccc--cccCCCC-CCcEEEECCCCcCC------------------CC-----
Confidence 0001110 00000000 0000000 00134577642100 00
Q ss_pred CCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCC
Q 040938 342 PPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDP 421 (487)
Q Consensus 342 ~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p 421 (487)
.......+.++.|++++|.|+|.+. ...+.|||+||.|+|++.... +..|
T Consensus 181 ----------------~~~~~~~~~v~~G~~~RlRliNa~~--~~~~~~~i~gh~~~via~DG~------------~~~P 230 (499)
T 3pxl_A 181 ----------------SVAELSVIKVTKGKRYRFRLVSLSC--NPNHTFSIDGHNLTIIEVDSV------------NSQP 230 (499)
T ss_dssp ----------------TTCCCCEEEECTTCEEEEEEEECCS--SCCEEEEETTBCEEEEEETTE------------EEEE
T ss_pred ----------------CCCCcceEEEcCCCEEEEEEEecCC--CeeEEEEECCCeEEEEEECCc------------ccCc
Confidence 0011346889999999999999864 467899999999999998521 2346
Q ss_pred CccceEEecCCcEEEEEEEcCCC-eeEEEeecc
Q 040938 422 AERNTVGVPSGGWVAIRFLADNP-GAWFMHCHL 453 (487)
Q Consensus 422 ~~rDtv~v~~~~~~~irf~~dnp-G~w~~HCHi 453 (487)
...|++.|.+|+...|-++++.+ |.|.+.|..
T Consensus 231 ~~~~~l~i~pGqR~dvlv~~~~~~g~y~i~a~~ 263 (499)
T 3pxl_A 231 LEVDSIQIFAAQRYSFVLDANQAVDNYWIRANP 263 (499)
T ss_dssp EEESBEEECTTCEEEEEEECCSCSSEEEEEEEE
T ss_pred eEeeeEEECCCcEEEEEEECCCCCceEEEEEec
Confidence 67899999999999999999765 888888864
No 61
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=98.74 E-value=7.2e-07 Score=93.77 Aligned_cols=256 Identities=12% Similarity=0.126 Sum_probs=149.0
Q ss_pred CCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCC----ceEEEEEcCceEE-EEEecCcccceeEeeEEEeC
Q 040938 106 SDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALN----DELFFSIANHTLT-VVETDAVYVKPIKTKVVLIT 180 (487)
Q Consensus 106 ~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~----~~~~~~i~~h~~~-via~DG~~v~P~~~~~l~l~ 180 (487)
...+++||+.. .|+|++++|+++++++.|.... ....+|.+|..+. --..||.+-- ..-.|.
T Consensus 43 ~~~~~~NG~~P---------GP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~v----tq~~I~ 109 (521)
T 1v10_A 43 RSAVTAEGTTI---------APLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFV----NQCPII 109 (521)
T ss_dssp EEEEEESSSSS---------CCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSCCBTT----TBCCBC
T ss_pred EEEEEECCccC---------CCcEEEeCCCEEEEEEEECCCCccCCCCceEecCCeeccCCCccCCCcce----eeCCcC
Confidence 35789999852 4899999999999999999862 5567888775531 1346887531 112378
Q ss_pred CCceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhh
Q 040938 181 PGQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKI 260 (487)
Q Consensus 181 pG~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 260 (487)
||+.++-.++..+.+ |.||-.++.... ..+ ...+.|...+... + . +..-+..+. ++.--+
T Consensus 110 PG~s~~Y~f~~~~~~--GT~wYH~H~~~q---~~~--Gl~G~liV~~~~~-------~-~-~~~~~~d~~----e~~l~l 169 (521)
T 1v10_A 110 PNESFVYDFVVPGQA--GTYWYHSHLSTQ---YCD--GLRGAFVVYDPND-------P-H-LSLYDVDDA----STVITI 169 (521)
T ss_dssp TTEEEEEEEECTTCC--EEEEEEECSTTG---GGG--TCEEEEEEECTTC-------T-T-GGGCSBCSG----GGEEEE
T ss_pred CCCeEEEEEecCCCC--ccEEEEeccCCc---hhc--CceEEEEEcCCcc-------c-c-cccCCCCCc----eeEEEE
Confidence 999999999965545 999999985210 011 2333343333210 0 0 000000000 000000
Q ss_pred hccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCC
Q 040938 261 RSLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPA 340 (487)
Q Consensus 261 ~~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~ 340 (487)
.+.... .+..+...... . .+.+ -...+||+.+... .
T Consensus 170 ~D~~~~---------~~~~~~~~~~~-~----------~~~~--d~~liNG~~~~~~--------------~-------- 205 (521)
T 1v10_A 170 ADWYHS---------LSTVLFPNPNK-A----------PPAP--DTTLINGLGRNSA--------------N-------- 205 (521)
T ss_dssp EEECSS---------CCC-------C-C----------CSCC--SEEEETTBCCCSS--------------C--------
T ss_pred cccccC---------CHHHHhhccCC-C----------CCCC--CEEEECCcccCCC--------------C--------
Confidence 000000 00000000000 0 0001 1345776543100 0
Q ss_pred CCCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCC
Q 040938 341 NPPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVD 420 (487)
Q Consensus 341 ~~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~ 420 (487)
. .......+.++.|++++|.|+|.+. ...|.|||+||.|.|++...+ +..
T Consensus 206 -~---------------~~~~~~~~~v~~G~~~RlRliNa~~--~~~~~~~i~gh~~~vi~~DG~------------~~~ 255 (521)
T 1v10_A 206 -P---------------SAGQLAVVSVQSGKRYRFRIVSTSC--FPNYAFSIDGHRMTVIEVDGV------------SHQ 255 (521)
T ss_dssp -G---------------GGSCCCEEEECTTCEEEEEEEECCS--SCCEEEEETTCCEEEEEETTE------------EEE
T ss_pred -C---------------CCCCceEEEECCCCEEEEEEEecCC--cccEEEEECCCeEEEEecCCc------------ccc
Confidence 0 0001246889999999999999874 457999999999999998532 124
Q ss_pred CCccceEEecCCcEEEEEEEcCC-CeeEEEeecchh---hhhccc-eEEEEEe
Q 040938 421 PAERNTVGVPSGGWVAIRFLADN-PGAWFMHCHLEV---HTSWGL-KMAWIVN 468 (487)
Q Consensus 421 p~~rDtv~v~~~~~~~irf~~dn-pG~w~~HCHi~~---H~~~GM-~~~~~V~ 468 (487)
|...|++.|.+|+...|.++++. +|.|.++|+... ....|+ .+.+.+.
T Consensus 256 p~~~~~l~l~pgqR~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ail~y~ 308 (521)
T 1v10_A 256 PLTVDSLTIFAGQRYSVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQ 308 (521)
T ss_dssp EEEESBEEECTTCEEEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEET
T ss_pred ceeeeeEEEcccceEEEEEEcCCCCCceeeeeccccccccCCCCceeEEEEEC
Confidence 66789999999999999999976 699999998652 233444 2445443
No 62
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=98.72 E-value=2.2e-07 Score=96.82 Aligned_cols=237 Identities=9% Similarity=0.083 Sum_probs=142.4
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCC----ceEEEEEcCceEEE-EEecCcccceeEeeEEEeCC
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALN----DELFFSIANHTLTV-VETDAVYVKPIKTKVVLITP 181 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~----~~~~~~i~~h~~~v-ia~DG~~v~P~~~~~l~l~p 181 (487)
..+++||+. ..|+|+++.|+++++++.|.... ....+|.+|..+.- -..||.+-- ..-.|.|
T Consensus 24 ~~~~~NG~~---------PGP~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~v----tq~pI~P 90 (495)
T 3t6v_A 24 PAVNAGGTF---------PGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFI----TQCPIIV 90 (495)
T ss_dssp EEEEETTSS---------SCCEEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTT----TBCCBCT
T ss_pred EEEEECCcc---------cCCeEEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCcc----ccCCCCC
Confidence 578999985 25999999999999999999864 35677887765421 357887531 1124899
Q ss_pred CceEEEEEEecCCCCCcceEEEeccCCCCCCCCCCcceEEEEEEecCCCCCCCCCCCCCCCCCCCCCCchhhhhhhhhhh
Q 040938 182 GQTTNVLLKAKHKSPNASFLIAARPYATGPASFDNTTTAGVLEYEQPNNANKNKKLPLLKPALPKFNDTNFAMQFSKKIR 261 (487)
Q Consensus 182 G~R~dv~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 261 (487)
|+.+.-.+++.+.+ |+||-.++.... ..+ ...+.|....... + . +......+.
T Consensus 91 G~sftY~f~~~~~~--GT~wYHsH~~~q---~~~--GL~G~lIV~~~~~-------~-~-~~~~~~d~~----------- 143 (495)
T 3t6v_A 91 GNSFSYNFNVPGMA--GTYWYHSHLTTQ---YCD--GLRGPFVVYDPND-------P-D-ANLYDVDDD----------- 143 (495)
T ss_dssp TCEEEEEEECTTCC--EEEEEEECSTTG---GGG--TCEEEEEEECTTC-------T-T-GGGCSBCSG-----------
T ss_pred CCeEEEEEEeCCCC--ceeeeeccchhH---Hhc--CceEEEEEcCccc-------c-c-cccCCCCCc-----------
Confidence 99999999996555 999999985211 011 2333333332210 0 0 000000000
Q ss_pred ccccCCCCCCCCCCcccEEEEEecccccCCCCCCcccCCCCCceeeeecceeccCCChhhhhhhhcCcccCcccCCCCCC
Q 040938 262 SLATAKFPAKVPRKVDRLFFFTVGLGLSPCPQNQTCQGPNNTMLAASINNVSFAQPNIALLQAHFFNKSKGVYTTDFPAN 341 (487)
Q Consensus 262 ~~~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 341 (487)
+..+.+. +......... ....+. ..-...+||+.... +.
T Consensus 144 ---------------e~~l~l~-Dw~~~~~~~~-~~~~p~-~~d~~liNG~g~~~------------------~~----- 182 (495)
T 3t6v_A 144 ---------------TTIITLA-DWYHVLAKEM-GAGGAI-TADSTLIDGLGRTH------------------VN----- 182 (495)
T ss_dssp ---------------GGEEEEE-EECSSCGGGS-CSSSCC-CCSEEEETTBCCBS------------------SS-----
T ss_pred ---------------eeEEEEe-cccCCchhhh-ccCCCC-CCcEEEECCcCcCC------------------CC-----
Confidence 0001110 0000000000 000000 00124577652100 00
Q ss_pred CCccccCCCCCCCCcccCCCceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCC
Q 040938 342 PPFKFNYTGTPPSNIMVSSGTRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDP 421 (487)
Q Consensus 342 ~p~~~~~~~~~~~~~~~~~~~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p 421 (487)
| .......+.++.|++++|.|+|.+. ...+.|||+||.|+|++.... +..|
T Consensus 183 -~--------------~~~~~~~~~v~~G~~~RlRliN~~~--~~~~~~~i~gh~~~via~DG~------------~~~P 233 (495)
T 3t6v_A 183 -V--------------AAVPLSVITVEVGKRYRMRLVSISC--DPNYDFSIDGHDMTIIETDGV------------DSQE 233 (495)
T ss_dssp -C--------------CCCCCCEEEECTTCEEEEEEEECCS--SCCEEEEETTCCEEEEEETTE------------EEEE
T ss_pred -c--------------ccCCceEEEEcCCCEEEEEEEecCC--CeeEEEEECCCeEEEEEeCCc------------ccCC
Confidence 0 0011346889999999999999763 467899999999999998521 2346
Q ss_pred CccceEEecCCcEEEEEEEcCCC-eeEEEeecc
Q 040938 422 AERNTVGVPSGGWVAIRFLADNP-GAWFMHCHL 453 (487)
Q Consensus 422 ~~rDtv~v~~~~~~~irf~~dnp-G~w~~HCHi 453 (487)
...|++.|.+|+...|-++++.+ |.|.++|..
T Consensus 234 ~~~~~l~i~pGqR~dvlv~~~~~~g~y~i~a~~ 266 (495)
T 3t6v_A 234 LTVDEIQIFAAQRYSFVLNANQPVGNYWIRANP 266 (495)
T ss_dssp EEESBEEECTTCEEEEEEECCSCSSEEEEEEEE
T ss_pred EEeeeEEEcCceEEEEEEECCCCCceEEEEEec
Confidence 67899999999999999999765 888899864
No 63
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=98.66 E-value=5.9e-08 Score=93.61 Aligned_cols=179 Identities=16% Similarity=0.265 Sum_probs=145.2
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCC------------Cccceeecccccc------cc-ccceeeEEEe
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTG------------QRGTLFWHAHISW------LR-ATLYGPIVIL 61 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~------------~~Gt~wYH~H~~~------~~-~Gl~G~liV~ 61 (487)
||+++++ ++||++ +|||+|+||++|+|+|++.+ ++||||||||.++ |. +||+|+|||+
T Consensus 63 HG~~~~~--~~DG~~-~t~~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~ 139 (276)
T 3kw8_A 63 HGLDYEI--SSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVR 139 (276)
T ss_dssp SSSBCCG--GGSCCT-TTTCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEE
T ss_pred cCcccCC--ccCCCc-CCcCCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEe
Confidence 9999985 599999 99999999999999999853 3899999999964 34 7999999999
Q ss_pred CCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEE
Q 040938 62 PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRM 141 (487)
Q Consensus 62 ~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~ 141 (487)
++... ..|+|++|++++| +|||+... ..+.|+++.|+++||||
T Consensus 140 ~~~~~-----~~drE~~l~l~~~-------------------------~iNG~~~~-------~~p~i~v~~G~~vri~l 182 (276)
T 3kw8_A 140 RKGDV-----LPDATHTIVFNDM-------------------------TINNRKPH-------TGPDFEATVGDRVEIVM 182 (276)
T ss_dssp CTTCC-----CCSEEEEEEEETT-------------------------EETTCCTT-------CCCCEEEETTCEEEEEE
T ss_pred cCCCc-----ccccceEEEeccc-------------------------ccceeccc-------CCCCEEEecCCEEEEEE
Confidence 98752 1389999998764 89998642 35789999999999999
Q ss_pred EecCCCceEEEEEcCceEEEEEecCccc----ceeEeeEEEeCCCceEEEEEEecC--CCCCcceEEEeccCCCCCCCCC
Q 040938 142 INAALNDELFFSIANHTLTVVETDAVYV----KPIKTKVVLITPGQTTNVLLKAKH--KSPNASFLIAARPYATGPASFD 215 (487)
Q Consensus 142 iN~~~~~~~~~~i~~h~~~via~DG~~v----~P~~~~~l~l~pG~R~dv~v~~~~--~~~~g~~~i~~~~~~~~~~~~~ 215 (487)
+|.+. ..+.|+|+||.|.+++ ||... .+..+|++.|.||||+++++++++ .+ |.|++.++...-.
T Consensus 183 ~N~~~-~~Hp~HlHG~~f~v~~-~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~np--G~w~~HCH~~~H~----- 253 (276)
T 3kw8_A 183 ITHGE-YYHTFHMHGHRWADNR-TGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGA--GAWMYHCHVQSHS----- 253 (276)
T ss_dssp EEESS-CCEEEEETTCCEESSS-SSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCS--EEEEEEECSHHHH-----
T ss_pred ecCCC-cceeEEEccceeEEec-cCccCCCcccccCCccEEeCCCceEEEEEEeccCCCC--CeEEEECCCchHh-----
Confidence 99997 5789999999999976 77543 246789999999999999999985 34 9999999853211
Q ss_pred CcceEEEEEEecC
Q 040938 216 NTTTAGVLEYEQP 228 (487)
Q Consensus 216 ~~~~~ail~y~~~ 228 (487)
.....+.+.+...
T Consensus 254 ~~GM~g~~~V~~~ 266 (276)
T 3kw8_A 254 DMGMVGLFLVKKP 266 (276)
T ss_dssp HTTCEEEEEEECT
T ss_pred hCCCeEEEEEeCC
Confidence 1124466666543
No 64
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.64 E-value=1.1e-07 Score=76.59 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=59.2
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCc-cceEEecCCcEEEEEEEcC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAE-RNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~-rDtv~v~~~~~~~irf~~d 442 (487)
.+.++.|+.|.|+ |.+ ...|.+|+++..+- +. ..+.+ .++..+.||+...+.| +
T Consensus 20 ~i~v~~G~~V~~~--n~~---~~~H~~~~~~~~~p--g~----------------~~~~~~~~~~~~~pG~~~~~tf--~ 74 (98)
T 1pcs_A 20 TVTIKAGEEVKWV--NNK---LSPHNIVFDADGVP--AD----------------TAAKLSHKGLLFAAGESFTSTF--T 74 (98)
T ss_dssp EEEECTTCEEEEE--ECS---SCCEEEEECCSSSC--HH----------------HHHHHCEEEEECSTTCEEEEEC--C
T ss_pred EEEECCCCEEEEE--ECC---CCCcEEEEeCCCCC--cc----------------ccccccccccccCCCCEEEEEc--C
Confidence 5789999999987 543 36899999874321 00 00012 5688899999888866 8
Q ss_pred CCeeEEEeecchhhhhccceEEEEEe
Q 040938 443 NPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 443 npG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
.||.|.|||+ .|.+.||++.+.|+
T Consensus 75 ~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 75 EPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp SCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CCeEEEEEcC--CccccCCeEEEEEC
Confidence 9999999999 79999999999884
No 65
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.60 E-value=1.4e-07 Score=75.94 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=59.7
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|+| .|.+ ...|.+|+|+..+ ..+ ++. ...++|+..+.||+...++| +.
T Consensus 19 ~i~v~~G~~V~~--~n~~---~~~H~~~~~~~~~-----p~~-~~~----------~~~~~~~~~~~pG~~~~~tf--~~ 75 (98)
T 2plt_A 19 TLTIKSGETVNF--VNNA---GFPHNIVFDEDAI-----PSG-VNA----------DAISRDDYLNAPGETYSVKL--TA 75 (98)
T ss_dssp EEEECTTCEEEE--EECS---SCCEEEEECGGGS-----CTT-CCH----------HHHCEEEEECSTTCEEEEEC--CS
T ss_pred EEEECCCCEEEE--EECC---CCceEEEEeCCCC-----CCc-ccc----------ccccccceecCCCCEEEEEe--CC
Confidence 578999999998 4643 4689999997522 000 000 01246789999999888865 69
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||+ .|.+.||.+.+.|+
T Consensus 76 ~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 76 AGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp CEEEEEECG--GGGGGTCEEEEEEC
T ss_pred CeEEEEEcC--CccccCCeEEEEEC
Confidence 999999999 79999999999884
No 66
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.55 E-value=2.2e-07 Score=73.52 Aligned_cols=72 Identities=17% Similarity=0.338 Sum_probs=57.1
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|.|+ |.+ ...|.+|+++.. +...++..+.||+...+.| +.
T Consensus 20 ~i~v~~Gd~V~~~--n~~---~~~H~v~~~~~~------------------------~~~~~~~~~~~g~~~~~~f--~~ 68 (91)
T 1bxv_A 20 TIEIQAGDTVQWV--NNK---LAPHNVVVEGQP------------------------ELSHKDLAFSPGETFEATF--SE 68 (91)
T ss_dssp EEEECTTCEEEEE--ECS---SCCEEEEETTCG------------------------GGCEEEEECSTTCEEEEEC--CS
T ss_pred EEEECCCCEEEEE--ECC---CCCcEEEEeCCC------------------------ccCcccceeCCCCEEEEEe--CC
Confidence 5789999999986 543 368999998721 0124678889998877766 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||+ .|...||.+.+.|+
T Consensus 69 ~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 69 PGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CEEEEEEeC--CCccCCCEEEEEEC
Confidence 999999999 89999999999884
No 67
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=98.55 E-value=5.4e-08 Score=79.49 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=42.5
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
|.+.... -+||+....+..|.||++++|.| +++|+|||||+.|. ||.|.|+|+
T Consensus 53 H~v~~~~--~~~g~~~~~~~~~~pG~~~~~tf---~~~G~y~y~C~~H~---gM~G~i~V~ 105 (105)
T 2ov0_A 53 HNVHFVA--GVLGEAALKGPMMKKEQAYSLTF---TEAGTYDYHCTPHP---FMRGKVVVE 105 (105)
T ss_dssp BCCEECT--TTSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSSCT---TCEEEEEEC
T ss_pred EEEEEcC--CCCCcccccccccCCCCEEEEEe---CCCEEEEEEeCCCC---CCEEEEEEC
Confidence 5555443 25777767777899999999988 57999999999875 999999985
No 68
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=98.53 E-value=4e-07 Score=75.14 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=58.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|.+.|.+. ..|-|++... .-+..+.||+...+.|.++.
T Consensus 39 ~i~v~~G~~V~~~~~n~d~---~~H~~~i~~~----------------------------~~~~~i~pG~~~~~~f~~~~ 87 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSP---ISEGFSIDAF----------------------------GVQEVIKAGETKTISFTADK 87 (112)
T ss_dssp EEEEETTCEEEEEEEECSS---SCEEEEEGGG----------------------------TEEEEECTTCEEEEEEECCS
T ss_pred EEEEeCCCEEEEEEEECCC---CeEEEEEcCC----------------------------CceeEeCCCCEEEEEEECCC
Confidence 5789999999999999642 3444443321 11677899999999999999
Q ss_pred CeeEEEeecchhhhhccceEEEEEeC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVND 469 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~ 469 (487)
||.|.||||+.-|... |.+.+.|++
T Consensus 88 ~G~y~~~C~~~~~~~~-M~g~i~V~~ 112 (112)
T 1iby_A 88 AGAFTIWCQLHPKNIH-LPGTLNVVE 112 (112)
T ss_dssp CEEEEEBCSSSCTTTB-CCEEEEEEC
T ss_pred CEEEEEECCCCCchHH-CEEEEEEeC
Confidence 9999999999887655 999999863
No 69
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=98.51 E-value=3.8e-06 Score=87.87 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=68.8
Q ss_pred eeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCccc----ceeEeeEEEe-CCCceEEEEEEecCCCCCcce
Q 040938 126 TFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYV----KPIKTKVVLI-TPGQTTNVLLKAKHKSPNASF 200 (487)
Q Consensus 126 ~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v----~P~~~~~l~l-~pG~R~dv~v~~~~~~~~g~~ 200 (487)
...+.++.|++++++++|......+.|||+||.|+|++.+|... .|...|++.| .||+++.|.++++.+ |.|
T Consensus 372 ~~~~~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~adnP---G~W 448 (503)
T 1hfu_A 372 GSVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDNP---GPW 448 (503)
T ss_dssp TSEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCCCCCCSSBCEESEEECCSTTCEEEEEEECCSC---EEE
T ss_pred ceEEEccCCCEEEEEEECCCCCCCCCEEEecceEEEEecCCCCccccCCCCeeeeEEecCCCceEEEEEEcCCC---eee
Confidence 35789999999999999654456789999999999999999763 5888999999 899999999999887 999
Q ss_pred EEEecc
Q 040938 201 LIAARP 206 (487)
Q Consensus 201 ~i~~~~ 206 (487)
.+.|+.
T Consensus 449 ~~HCHi 454 (503)
T 1hfu_A 449 FFHCHI 454 (503)
T ss_dssp EEEESS
T ss_pred eEecCc
Confidence 999985
No 70
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=98.49 E-value=2.3e-07 Score=92.16 Aligned_cols=179 Identities=16% Similarity=0.259 Sum_probs=142.8
Q ss_pred CccccCCCCCCCCCCCcccccCCCCCeEEEEEEeCC------------Cccceeeccccc------ccc-ccceeeEEEe
Q 040938 1 HGVRQLRSGWADGPAYITQCPIQTGQSYVYNFTVTG------------QRGTLFWHAHIS------WLR-ATLYGPIVIL 61 (487)
Q Consensus 1 HGl~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~------------~~Gt~wYH~H~~------~~~-~Gl~G~liV~ 61 (487)
||++++ .++||++ +|||+|+||++|+|+|++.+ ++||||||||.. .|. +||+|+|||+
T Consensus 104 HG~~~~--~~~DG~~-~t~~~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~ 180 (343)
T 3cg8_A 104 HGLDYE--ISSDGTA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVR 180 (343)
T ss_dssp SSSBCC--GGGSCCT-TTTCSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEE
T ss_pred cCcccC--CcCCCcc-cccccccCCCEEEEEEEeCCCCcccccccCCCCceEEEEecCccccccchhhhhcCCeEEEEEe
Confidence 899988 4799999 89999999999999999832 369999999974 244 7999999999
Q ss_pred CCCCCCCCCCCCCcceeEEeeeccccChHHHHHHHhhcCCCCCCCCeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEE
Q 040938 62 PKRHASYPFPQPFKEVPMIFGEWWKADTEKIINQALQTGAAPNISDAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRM 141 (487)
Q Consensus 62 ~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~ 141 (487)
++.+. ..|+|++|+++|| +|||+..+ ..+.|.|+.|++|||||
T Consensus 181 ~~~~~-----~pd~e~~l~~~d~-------------------------~iNG~~~~-------~~~~l~v~~Ge~vri~l 223 (343)
T 3cg8_A 181 RKGDV-----LPDATHTIVFNDM-------------------------TINNRKPH-------TGPDFEATVGDRVEIVM 223 (343)
T ss_dssp CTTCC-----CCSEEEEEEEETT-------------------------EETTCCTT-------CCCCEEEETTCEEEEEE
T ss_pred cCCCC-----CCCceEEEEcccc-------------------------eecccCCC-------CCccEEeCCCCEEEEEE
Confidence 88652 2478999999875 78998632 24789999999999999
Q ss_pred EecCCCceEEEEEcCceEEEEEecCcccc----eeEeeEEEeCCCceEEEEEEecC--CCCCcceEEEeccCCCCCCCCC
Q 040938 142 INAALNDELFFSIANHTLTVVETDAVYVK----PIKTKVVLITPGQTTNVLLKAKH--KSPNASFLIAARPYATGPASFD 215 (487)
Q Consensus 142 iN~~~~~~~~~~i~~h~~~via~DG~~v~----P~~~~~l~l~pG~R~dv~v~~~~--~~~~g~~~i~~~~~~~~~~~~~ 215 (487)
+|.+. ..+.|+|+||.|+|+ .||.+.. +...|++.|.||||++|++++++ .+ |.|++.++...-.
T Consensus 224 ~N~g~-~~HpfHlHGh~f~v~-~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~p--G~w~~HCHi~~H~----- 294 (343)
T 3cg8_A 224 ITHGE-YYHTFHMHGHRWADN-RTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGA--GAWMYHCHVQSHS----- 294 (343)
T ss_dssp EEESS-CCEEEEETTCCEESS-SSSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCS--EEEEEEECSHHHH-----
T ss_pred EcCCc-cccccEecCcEEEEe-ccCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCC--eeEEEeCCCHHHH-----
Confidence 99996 678999999999997 4676543 45789999999999999999843 23 9999999853211
Q ss_pred CcceEEEEEEecC
Q 040938 216 NTTTAGVLEYEQP 228 (487)
Q Consensus 216 ~~~~~ail~y~~~ 228 (487)
.....+.+.+...
T Consensus 295 ~~GM~g~~~V~~~ 307 (343)
T 3cg8_A 295 DMGMVGLFLVKKP 307 (343)
T ss_dssp HTTCEEEEEEECT
T ss_pred hccCcEEEEEecC
Confidence 1235566777643
No 71
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.49 E-value=2.4e-07 Score=74.37 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=58.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|+ |.+ ...|.+++++..+ ..+. ....+++..+.||+...+.| +.
T Consensus 20 ~i~v~~G~~V~~~--n~~---~~~H~~~~~~~~~-----~~~~-------------~~~~~~~~~~~~g~~~~~tf--~~ 74 (97)
T 1b3i_A 20 ALSISAGDTVEFV--MNK---VGPHNVIFDKVPA-----GESA-------------PALSNTKLAIAPGSFYSVTL--GT 74 (97)
T ss_dssp EEEECTTCEEEEE--ECS---SCCCCBEEEECCT-----TSCH-------------HHHCBCCCCCSCSCCEEEEC--CS
T ss_pred EEEECCCCEEEEE--ECC---CCCeEEEEeCCCC-----cccc-------------ccccccceecCCCCEEEEEe--CC
Confidence 5689999999887 543 3689999987544 0000 00014677788898887766 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||+ .|.+.||.+.+.|+
T Consensus 75 ~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 75 PGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CSEEEEECS--STTTTTCEEEEEEC
T ss_pred CeEEEEEcc--ChhhcCCEEEEEEC
Confidence 999999999 89999999999884
No 72
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.48 E-value=5.8e-07 Score=72.56 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=58.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|++.|.+ ...|.|.+.+..+ ...+.||....+.|+++.
T Consensus 29 ~i~v~~G~tV~~~~~n~d---~~~H~~~~~~~~~----------------------------~~~~~pg~~~~~~~t~~~ 77 (100)
T 4hci_A 29 VITIPINESTTLLLKNKG---KSEHTFTIKKLGI----------------------------DVVVESGKEKNITVKPKS 77 (100)
T ss_dssp EEEECTTSCEEEEEEECS---SSCEEEEEGGGTE----------------------------EEEECTTCEEEEEECCCS
T ss_pred EEEECCCCEEEEEEEcCC---CceEEEEEecCCc----------------------------ceeecCCcceeEEEeccc
Confidence 578999999999999964 3567666544322 345678889999999999
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|+|. .|...||.+.+.|+
T Consensus 78 ~G~Y~y~C~--~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 78 AGTYELICR--YHLLKGMEGKVIVK 100 (100)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CceEEEECc--cccCCCCEEEEEEC
Confidence 999999997 59999999999884
No 73
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.44 E-value=3.8e-07 Score=73.48 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=58.9
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|+| .|.+ ...|.+|+++..|- .| ++. ... ...++++.+.+|+...+.| +.
T Consensus 18 ~i~v~~G~tV~~--~n~~---~~~H~~~~~~~~~p-----~g-~~~------~~~--~~~~~~~~~~~G~~~~~~f--~~ 76 (99)
T 1byp_A 18 DLSIASGEKITF--KNNA---GFPHNDLFDKKEVP-----AG-VDV------TKI--SMPEEDLLNAPGEEYSVTL--TE 76 (99)
T ss_dssp EEEECTTEEEEE--EECS---SCCBCCEECTTSSC-----TT-CCH------HHH--SCCTTCCBCSTTCEEEEEE--CS
T ss_pred EEEECCCCEEEE--EECC---CCcceEEEeCCCCc-----cc-ccc------ccc--cccccceeeCCCCEEEEEe--CC
Confidence 578999999988 4643 46899999975430 00 000 000 1125667888999888866 69
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||+ .|.+.||.+.+.|+
T Consensus 77 ~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 77 KGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp CEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CcEEEEEcC--CccccCCEEEEEEC
Confidence 999999999 79999999999884
No 74
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=98.36 E-value=1.8e-07 Score=81.81 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=35.3
Q ss_pred cCCCCC--eEEEEEEeCCCccceeecccccccc-ccceeeEEEe
Q 040938 21 PIQTGQ--SYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~--~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 61 (487)
.|.||+ +++|.|++ ++||||||||..++. +||+|.|+|+
T Consensus 113 ~i~PG~sgt~t~tft~--~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 113 VPKDGKFGYTDFTWHP--TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp CCBTTBEEEEEEEECC--CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred ccCCCCceEEEEEEEE--CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 689999 99999995 899999999987776 8999999995
No 75
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.34 E-value=8.9e-07 Score=71.66 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCc-cceEEecCCcEEEEEEEcC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAE-RNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~-rDtv~v~~~~~~~irf~~d 442 (487)
.+.++.|++|+|+ |.+ ...|.++++.-... .+.+... . ..+.+ .+++.+.||+...+.| +
T Consensus 18 ~i~v~~G~tV~~~--n~~---~~~H~~~~~~~~~~-----~~~~~~~------~-~~~~~~~~~~~~~pG~~~~~tf--~ 78 (102)
T 1kdj_A 18 SITVSAGEAVEFT--LVG---ETGHNIVFDIPAGA-----PGTVASE------L-KAASMDENDLLSEDEPSFKAKV--S 78 (102)
T ss_dssp EEEECTTCCEEEE--ECS---SSCBCCEECCCTTC-----CHHHHHH------H-HHTSCCTTCCBBTTBCEEEECC--C
T ss_pred EEEECCCCEEEEE--ECC---CCCeEEEEeCcccc-----cccccch------h-hcccccccceecCCCCEEEEEe--C
Confidence 5789999999986 643 36899998731100 0000000 0 00112 4677788998888766 8
Q ss_pred CCeeEEEeecchhhhhccceEEEEEe
Q 040938 443 NPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 443 npG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
.||.|.|||+ .|.+.||.+.+.|+
T Consensus 79 ~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 79 TPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp SCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CCeEEEEEeC--CCcccCCeEEEEEC
Confidence 9999999999 99999999999884
No 76
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=98.33 E-value=3.2e-07 Score=75.78 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=38.2
Q ss_pred cccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeC
Q 040938 19 QCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 19 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
+..|.||++++|.|++ +++|+||||||.+....+|.|.|+|.+
T Consensus 70 ~~~i~pG~~~~~~f~~-~~~G~y~~~C~~~~~~~~M~g~i~V~~ 112 (112)
T 1iby_A 70 QEVIKAGETKTISFTA-DKAGAFTIWCQLHPKNIHLPGTLNVVE 112 (112)
T ss_dssp EEEECTTCEEEEEEEC-CSCEEEEEBCSSSCTTTBCCEEEEEEC
T ss_pred eeEeCCCCEEEEEEEC-CCCEEEEEECCCCCchHHCEEEEEEeC
Confidence 5679999999999996 899999999998876666999999974
No 77
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=98.32 E-value=2.3e-06 Score=88.60 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=77.0
Q ss_pred eEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEe--cCccc---ceeEeeEEEeCCC
Q 040938 108 AFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVET--DAVYV---KPIKTKVVLITPG 182 (487)
Q Consensus 108 ~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~--DG~~v---~P~~~~~l~l~pG 182 (487)
..+|||+... ...+.+.++.|++++|+|+|.+ ...+.|||+||.|+|++. ||... ++...|++.|.||
T Consensus 372 ~~~iNG~~~~------~~~~~~~~~~G~~v~w~l~N~~-~~~Hp~HlHG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg 444 (481)
T 3zx1_A 372 MFLINRKSYD------LKRIDLSSKLGVVEDWIVINKS-HMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPN 444 (481)
T ss_dssp TEEETTBCCC------TTCCCEEEETTCCEEEEEEECS-SSCEEEEETTCCEEEEEEEETTEEEECSSCCEESEEEECTT
T ss_pred eeEECCEeCC------CCCceEEeCCCCEEEEEEEcCC-CCceeEEEeccEEEEEEecccCCCCCcccCcccceEEECCC
Confidence 4899999742 1246799999999999999976 467899999999999999 99876 3678999999999
Q ss_pred ceEEEEEEecCCCCCcceEEEecc
Q 040938 183 QTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 183 ~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
|++.|.++++.+ |.|.+.|+.
T Consensus 445 ~~~~i~~~~d~p---G~w~~HCHi 465 (481)
T 3zx1_A 445 EELRLRMKQDFK---GLRMYHCHI 465 (481)
T ss_dssp CEEEEEECCCSC---EEEEEEESS
T ss_pred CEEEEEEEcCCC---eeEEEEcCC
Confidence 999999999777 999999985
No 78
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=98.32 E-value=7.5e-06 Score=86.57 Aligned_cols=85 Identities=18% Similarity=0.326 Sum_probs=69.6
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccce------EEecCCcEEEE
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNT------VGVPSGGWVAI 437 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDt------v~v~~~~~~~i 437 (487)
++.++.|++|++.+.|.. ....+.+|+||.... + +.|-|- -.|+||+..+.
T Consensus 99 ~I~~~~GD~v~V~v~N~l--~~~~tsIHwHGl~~~----~-----------------t~~~DGvp~vTq~pI~PG~sftY 155 (580)
T 3sqr_A 99 AIIADWGDNLIIHVTNNL--EHNGTSIHWHGIRQL----G-----------------SLEYDGVPGVTQCPIAPGDTLTY 155 (580)
T ss_dssp CEEEETTCEEEEEEEECC--SSCCBCEEETTCCCT----T-----------------CGGGSCCBTTTBCCBCTTCEEEE
T ss_pred eEEEeCCCEEEEEEEECC--CCCcceEEecccccC----C-----------------CccccCCCccccCCCCCCCeEEE
Confidence 578889999999999974 235799999997521 1 012232 35899999999
Q ss_pred EEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 438 RFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 438 rf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
+|+++.+|.|.||||...+...||.+.+.|+++.
T Consensus 156 ~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p~ 189 (580)
T 3sqr_A 156 KFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGPA 189 (580)
T ss_dssp EEECCCCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEECCCCcceEEeecccccccCcCEEEEEeeCcc
Confidence 9999999999999999999999999999998764
No 79
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=98.31 E-value=1.4e-06 Score=90.40 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred eEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccce---eEeeEEEeCCCce
Q 040938 108 AFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKP---IKTKVVLITPGQT 184 (487)
Q Consensus 108 ~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P---~~~~~l~l~pG~R 184 (487)
..+|||+.+.. ..+.++++.|+++||+|+|.+....+.|||+||.|+|++.||..+.| ...|++.|. |++
T Consensus 379 ~~~ING~~~~~------~~~~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~~kDTV~v~-g~~ 451 (488)
T 3od3_A 379 ANKINGQAFDM------NKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVE-GNV 451 (488)
T ss_dssp CEEETTBCCCT------TCCSEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEEBTTBCCCGGGSSSBSEEEES-SSE
T ss_pred eeeECCeeCCC------CCCceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEeccCCCccccccCCceeEEEeC-CCE
Confidence 36999997521 24668999999999999999866679999999999999999988743 468999999 999
Q ss_pred EEEEEEecCCCC-CcceEEEeccC
Q 040938 185 TNVLLKAKHKSP-NASFLIAARPY 207 (487)
Q Consensus 185 ~dv~v~~~~~~~-~g~~~i~~~~~ 207 (487)
+.|+|+++.+.. .|.|.+.|+.+
T Consensus 452 ~~i~~~f~~~~~~~G~~m~HCH~l 475 (488)
T 3od3_A 452 SEVLVKFNHDAPKEHAYMAHCHLL 475 (488)
T ss_dssp EEEEECBCSCCCGGGCEEEEESSH
T ss_pred EEEEEEeccCCCCCCCEEEeCCch
Confidence 999999976421 26899998853
No 80
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=98.30 E-value=1.7e-06 Score=91.58 Aligned_cols=86 Identities=19% Similarity=0.294 Sum_probs=70.0
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccce------EEecC-CcEE
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNT------VGVPS-GGWV 435 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDt------v~v~~-~~~~ 435 (487)
+++.++.|++|++.+.|.. ....+.+|+||.... + +.+-|- -.|+| |+..
T Consensus 67 P~i~~~~GD~v~v~v~N~l--~~~~tsiHwHG~~~~----~-----------------~~~~DG~~~~tq~~I~P~G~~~ 123 (559)
T 2q9o_A 67 PNIVANWGDTVEVTVINNL--VTNGTSIHWHGIXQK----D-----------------TNLHDGANGVTECPIPPKGGQR 123 (559)
T ss_dssp CCEEEETTCEEEEEEEEEC--SSCCBCEEEETCCCT----T-----------------CGGGSCCBTTTBCCBCTTTEEE
T ss_pred CcEEEeCCCEEEEEEEeCC--CCCCceEEcCCCccC----C-----------------CCCcCCCCccccCccCCCCCeE
Confidence 3678899999999999974 246799999997531 0 012221 34889 9999
Q ss_pred EEEEEcCCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 436 AIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 436 ~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
+.+|+++.+|.|.||||...|...||.+.+.|+++.
T Consensus 124 ~Y~f~~~q~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 159 (559)
T 2q9o_A 124 TYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPA 159 (559)
T ss_dssp EEEEECCSCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEEEECCCCEEEEEEEcccchhcCCceEEEEecCCC
Confidence 999999999999999999999999999999998764
No 81
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.21 E-value=7.6e-07 Score=72.61 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=35.1
Q ss_pred cccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeC
Q 040938 19 QCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 19 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
.-.|.||++++|.|+++.++|+|||||| ....+||.|.|+|++
T Consensus 64 ~~~~~pG~~~~~~f~~~~~~G~y~y~C~-~H~~~GM~G~i~V~~ 106 (106)
T 2gim_A 64 QLLMSPGQSTSTTFPADAPAGEYTFYCE-PHRGAGMVGKITVAG 106 (106)
T ss_dssp SCCCSTTCEEEEECCTTCCSEEEEEECT-TTGGGTCEEEEEECC
T ss_pred ceeeCCCCEEEEEEecCCCCceEEEEeC-ChhhcCcEEEEEEcC
Confidence 3458999999999985478999999999 223369999999964
No 82
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.16 E-value=3.8e-06 Score=67.47 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=57.6
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|+| .|.+ ...|.++++...+- .+. + ..+. ...++.+.+.||+...+.| +.
T Consensus 18 ~i~v~~G~tV~~--~n~~---~~~H~v~~~~~~~p-----~~~-~------~~~~--~~~~~~~~~~~G~~~~~tf--~~ 76 (99)
T 1plc_A 18 EFSISPGEKIVF--KNNA---GFPHNIVFDEDSIP-----SGV-D------ASKI--SMSEEDLLNAKGETFEVAL--SN 76 (99)
T ss_dssp EEEECTTCEEEE--EECS---SCCBCCEECTTSSC-----TTC-C------HHHH--CCCTTCCBCSTTCEEEEEC--CS
T ss_pred EEEECCCCEEEE--EECC---CCceEEEEeCCCCc-----ccc-c------cccc--ccccCccccCCCCEEEEEE--CC
Confidence 578999999988 5643 46899999875320 000 0 0000 0124556788998877765 69
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||+ -|.+.||.+.+.|+
T Consensus 77 ~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 77 KGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp CEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CceEEEEcC--CCcccCCEEEEEEC
Confidence 999999999 79999999999883
No 83
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.6e-06 Score=86.59 Aligned_cols=86 Identities=19% Similarity=0.341 Sum_probs=70.1
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccce------EEecCCcEEE
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNT------VGVPSGGWVA 436 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDt------v~v~~~~~~~ 436 (487)
+++.++.|+.|++.+.|.. ....+.+|+||..... +.+-|- -.|+||+..+
T Consensus 34 P~i~~~~Gd~v~v~v~N~l--~~~~tsiHwHG~~~~~---------------------~~~~DG~~~vtq~pI~PG~~~~ 90 (534)
T 1zpu_A 34 PDITVNKGDRVQIYLTNGM--NNTNTSMHFHGLFQNG---------------------TASMDGVPFLTQCPIAPGSTML 90 (534)
T ss_dssp CCEEEETTCEEEEEEECCC--SSCCBCCEEETCCCTT---------------------CGGGSCCBTTTBCCBCTTCEEE
T ss_pred ccEEEECCCEEEEEEEeCC--CCCCeeEEcCCcccCC---------------------CCcccCCCccccCCcCCCCeEE
Confidence 3578899999999999974 2378999999975310 012222 2588999999
Q ss_pred EEEEcC-CCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 437 IRFLAD-NPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 437 irf~~d-npG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
.+|+++ .+|.|.||||...|...||.+.+.|+++.
T Consensus 91 Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 91 YNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDS 126 (534)
T ss_dssp EEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTT
T ss_pred EEEEeCccceeEEEEEcCcccccCcceeeEEeCCCC
Confidence 999997 99999999999999999999999998775
No 84
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=98.13 E-value=6.8e-06 Score=71.72 Aligned_cols=85 Identities=15% Similarity=0.290 Sum_probs=61.3
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccce-------EEecCCc--
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNT-------VGVPSGG-- 433 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDt-------v~v~~~~-- 433 (487)
+.+.++.|+.|.+++.|.+. ...|-|-++.. +. .+... |.-.+. ..|.||+
T Consensus 61 p~i~V~~GD~V~~~~tN~~~--~~~H~~~i~~~-------~~-~~~~~----------~~~~~~~~~~~~~~~i~PG~sg 120 (154)
T 2cal_A 61 PTLEIPAGATVDVTFINTNK--GFGHSFDITKK-------GP-PYAVM----------PVIDPIVAGTGFSPVPKDGKFG 120 (154)
T ss_dssp CEEEECTTCEEEEEEEECCT--TCCCCCEEESC-------CS-CCCSS----------CCCCSEEEEBCCCCCCBTTBEE
T ss_pred CEEEEeCCCEEEEEEEcCCC--CeeeEEEEeec-------Cc-chhcc----------ccccccccccccccccCCCCce
Confidence 46899999999999999631 35666665522 10 11000 001111 2678999
Q ss_pred EEEEEEEcCCCeeEEEeecchhhhhccceEEEEEe
Q 040938 434 WVAIRFLADNPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 434 ~~~irf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
...+.|++ .||.+.||||+.-|...||-+.+.|+
T Consensus 121 t~t~tft~-~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 121 YTDFTWHP-TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp EEEEEECC-CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred EEEEEEEE-CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 99999999 99999999999999999999999883
No 85
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=98.13 E-value=7.7e-06 Score=87.05 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=74.3
Q ss_pred CeEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCc-------------------
Q 040938 107 DAFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAV------------------- 167 (487)
Q Consensus 107 d~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~------------------- 167 (487)
..+.|||+.+. ..+.+.++.|++++|+|+|.+. ..+.|||++|.|+|++.+|.
T Consensus 459 ~~~~iNG~~~~-------~~~~~~v~~G~~v~w~l~N~~~-~~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~ 530 (612)
T 2g23_A 459 KTYRRTAATFN-------DGLGFTIGEGTHEQWTFLNLSP-ILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLD 530 (612)
T ss_dssp EEEEEEECSTT-------SCCCEEEETTCEEEEEEEECSS-SCEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEE
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEEeCCC-CCCCeEEcCceEEEecccCcccccccccccCcccccccc
Confidence 35889999652 3468999999999999999984 56899999999999997542
Q ss_pred -----cc---ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 168 -----YV---KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 168 -----~v---~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
.+ ++...|++.|.||+++.|.++++..+ |.|.+.|+..
T Consensus 531 ~g~~~~~~~~e~~~kDTv~v~Pg~~~~i~~~~~~~p--G~w~~HCHil 576 (612)
T 2g23_A 531 PDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAY--GRFMYHCHLL 576 (612)
T ss_dssp EEEECCCCTTSSSCBSEEEECSSEEEEEEEECCSCC--EEEEEEESSH
T ss_pred cccccCCCcccccccCeEEECCCcEEEEEEEeCCCC--ccEEEEeCch
Confidence 11 22368999999999999999999444 9999999863
No 86
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.07 E-value=1.3e-05 Score=84.29 Aligned_cols=78 Identities=15% Similarity=0.349 Sum_probs=63.0
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+.+.++.|+.|+|++.|.....+..|.|+++++.+ -..+.||....+.|+++
T Consensus 513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~gv----------------------------~~~i~PG~t~t~~Fta~ 564 (595)
T 1fwx_A 513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGV----------------------------AMEIGPQMTSSVTFVAA 564 (595)
T ss_dssp SEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTE----------------------------EEEECTTCEEEEEEECC
T ss_pred CEEEEECCCEEEEEEEeCCCCCCceeeEEecCCCc----------------------------ceeeCCCCeEEEEEECC
Confidence 46789999999999999642224578888876532 15688899999999999
Q ss_pred CCeeEEEeec---chhhhhccceEEEEEeCC
Q 040938 443 NPGAWFMHCH---LEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 443 npG~w~~HCH---i~~H~~~GM~~~~~V~~~ 470 (487)
.||.|.|||| ...|. ||.+.+.|++.
T Consensus 565 ~pGtY~yhC~e~Cg~~H~--gM~G~IiV~p~ 593 (595)
T 1fwx_A 565 NPGVYWYYCQWFCHALHM--EMRGRMLVEPK 593 (595)
T ss_dssp SCEEEEEECCSCCSTTCT--TCEEEEEEECC
T ss_pred CCEEEEEECCCCCCCCcc--CCEEEEEEEcC
Confidence 9999999999 45775 99999999754
No 87
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=98.06 E-value=6.9e-06 Score=84.60 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=70.6
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+++.++.|+.|++.+.|.. ...+.+|+||...- ...+|. |. ..|.||+..+.+|+++
T Consensus 38 P~i~~~~Gd~v~v~~~N~l---~~~tsiHwHG~~~~--~~~DG~--------------~~----~~i~PG~~~~Y~f~~~ 94 (448)
T 3aw5_A 38 PTIILRRGQRVDMTLKNKL---TEPTIVHWHGFDVN--WHNDAH--------------PS----FAITPGESYNYSFDVV 94 (448)
T ss_dssp CEEEEETTCEEEEEEEECS---SSCBCEEEETCCCC--HHHHTC--------------GG----GCBCTTCEEEEEEECC
T ss_pred ceEEEeCCCEEEEEEEECC---CCceeEEeCCccCC--CccCCC--------------CC----ccCCCCCEEEEEEEcC
Confidence 4688999999999999975 47899999997631 111111 11 5688999999999997
Q ss_pred -CCeeEEEeec----chhhhhccceEEEEEeCCCC
Q 040938 443 -NPGAWFMHCH----LEVHTSWGLKMAWIVNDGKG 472 (487)
Q Consensus 443 -npG~w~~HCH----i~~H~~~GM~~~~~V~~~~~ 472 (487)
.+|.|.|||| ...+...||.+.+.|+++..
T Consensus 95 ~~~GT~wYH~H~~~~~~~q~~~Gl~G~liV~~~~~ 129 (448)
T 3aw5_A 95 NRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGS 129 (448)
T ss_dssp SCSEEEEEEECCTTTHHHHHHTTCCEEEEEECTTT
T ss_pred CCCCceEeccCCCCchHHHHhccceEEEEEeCCcc
Confidence 7999999999 88999999999999998764
No 88
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.96 E-value=2.6e-05 Score=63.30 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=51.1
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|+ |.+ ...|.+|++... .|. .. + ++-.+.+|+...+.| +.
T Consensus 34 ~i~v~~Gd~V~~~--N~d---~~~H~v~~~~~~-------~g~-------~~-------~-~~~~~~pG~~~~~tf--~~ 84 (105)
T 2ov0_A 34 ELHVKVGDTVTWI--NRE---AMPHNVHFVAGV-------LGE-------AA-------L-KGPMMKKEQAYSLTF--TE 84 (105)
T ss_dssp EEEECTTCEEEEE--ECS---SSCBCCEECTTT-------SSS-------SC-------E-ECCCBCTTEEEEEEE--CS
T ss_pred EEEECCCCEEEEE--ECC---CCCEEEEEcCCC-------CCc-------cc-------c-cccccCCCCEEEEEe--CC
Confidence 5789999999985 643 368999988521 111 00 1 122367888766665 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||++ |. ||.+.+.|+
T Consensus 85 ~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 85 AGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp CEEEEEECSS--CT--TCEEEEEEC
T ss_pred CEEEEEEeCC--CC--CCEEEEEEC
Confidence 9999999998 55 999999884
No 89
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=97.87 E-value=2.7e-05 Score=81.85 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=68.0
Q ss_pred ceEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEc
Q 040938 362 TRAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLA 441 (487)
Q Consensus 362 ~~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~ 441 (487)
.+++.++.|+.|++.+.|.. ...+.+|+||... . +..|.. + + -.|.||+..+.+|.+
T Consensus 68 GPtI~~~~Gd~v~v~v~N~l---~~~tsiHwHGl~~----~--~~~DG~----------~---~-~~i~PG~~~~Y~f~~ 124 (534)
T 3abg_A 68 GPTFQVPRGVETVVRFINNA---EAPNSVHLHGSFS----R--AAFDGW----------A---E-DITEPGSFKDYYYPN 124 (534)
T ss_dssp EEEEEEETTCCEEEEEEECS---SSCBCEEEETCCC----C--TTTTTC----------S---S-SCBSSCSCCCEEECC
T ss_pred CceEEEeCCcEEEEEEEECC---CCCceEEECCCcC----C--CCCCCC----------C---C-CCCCCCCeEEEEEec
Confidence 45789999999999999975 4789999999742 1 111111 0 1 137899999999999
Q ss_pred CC-CeeEEEeecch----hhhhccceEEEEEeCCCC
Q 040938 442 DN-PGAWFMHCHLE----VHTSWGLKMAWIVNDGKG 472 (487)
Q Consensus 442 dn-pG~w~~HCHi~----~H~~~GM~~~~~V~~~~~ 472 (487)
+. .|.+.||||.. .|...||.+.+.|+++.+
T Consensus 125 ~~~~GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~~~ 160 (534)
T 3abg_A 125 RQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAE 160 (534)
T ss_dssp CSSSCEEEEEECCTTCHHHHHHTBCEEEEEEECTTT
T ss_pred CCcceeEEEecCccccchhhhhhcceEEEEEECCcc
Confidence 76 58999999985 478899999999998764
No 90
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=97.85 E-value=1.2e-05 Score=69.02 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=34.6
Q ss_pred CCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 22 IQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 22 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
|.||+++++.|++ +++|+||||||......||.|.|+|+
T Consensus 101 l~pGet~~v~f~~-~~pG~y~f~C~~~~H~~GM~G~i~V~ 139 (139)
T 2aan_A 101 ANGNETVEVTFTA-PAAGTYLYICTVPGHYPLMQGKLVVN 139 (139)
T ss_dssp BCTTCEEEEEEEC-CSSEEEEEECCSTTTTTTSEEEEEEC
T ss_pred cCCCCEEEEEEEC-CCCeEEEEEcCCCChHHcCEEEEEEC
Confidence 7999999999997 78999999999866544999999984
No 91
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.82 E-value=9.8e-06 Score=85.22 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=37.4
Q ss_pred cccCCCCCeEEEEEEeCCCccceeecccc-cccc-ccceeeEEEeCCC
Q 040938 19 QCPIQTGQSYVYNFTVTGQRGTLFWHAHI-SWLR-ATLYGPIVILPKR 64 (487)
Q Consensus 19 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~~~-~Gl~G~liV~~~~ 64 (487)
++.|.||++++|.|++ +++||||||||. .+.. .||+|.|+|++++
T Consensus 548 ~~~i~PG~t~t~~Fta-~~pGtY~yhC~e~Cg~~H~gM~G~IiV~p~~ 594 (595)
T 1fwx_A 548 AMEIGPQMTSSVTFVA-ANPGVYWYYCQWFCHALHMEMRGRMLVEPKE 594 (595)
T ss_dssp EEEECTTCEEEEEEEC-CSCEEEEEECCSCCSTTCTTCEEEEEEECC-
T ss_pred ceeeCCCCeEEEEEEC-CCCEEEEEECCCCCCCCccCCEEEEEEEcCC
Confidence 4779999999999997 899999999993 2222 5999999999763
No 92
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=97.77 E-value=3e-05 Score=65.15 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=33.3
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCCC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPKR 64 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~ 64 (487)
-+.||++|+|.| +.+|+|||||-.| ..+||.|.|+|.++.
T Consensus 59 ~s~pGet~s~TF---~~pG~y~y~C~~H-~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 59 KGKINEEITVTL---SKPGVYMYQCAPH-VGMGMIGAIVVGEPA 98 (127)
T ss_dssp BCCTTCCCEEEC---CSCEEEEEECTTT-GGGTCEEEEEESSCT
T ss_pred ecCCCCEEEEEe---CCCeEEEEEeCCC-CcCCcEEEEEECcCC
Confidence 357999999999 4799999999854 347999999999754
No 93
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=97.72 E-value=5.5e-05 Score=63.17 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=32.1
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPK 63 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 63 (487)
-+.||++|+|.| +.+|+|||+|-.|. .+||.|.|+|.+.
T Consensus 57 ~~~pg~t~s~TF---~~pG~y~y~C~~H~-~~GM~G~I~V~~~ 95 (123)
T 3erx_A 57 KSKINESYTLTV---TEPGLYGVKCTPHF-GMGMVGLVQVGDA 95 (123)
T ss_dssp BCCTTCCEEEEE---CSCEEEEEECGGGT-TTTCEEEEEESSS
T ss_pred ecCCCCEEEEEe---CCCeEEEEEeCCCC-cCCcEEEEEECCC
Confidence 357999999999 46999999998432 3699999999874
No 94
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=97.66 E-value=1.7e-05 Score=63.37 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=31.2
Q ss_pred ccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
-.+.||+++++.| +.+|+|||||+.| ..+||.|.|+|+
T Consensus 60 ~~~~~g~~~~~tf---~~~G~y~y~C~~H-~~~gM~G~i~V~ 97 (97)
T 1b3i_A 60 LAIAPGSFYSVTL---GTPGTYSFYCTPH-RGAGMVGTITVE 97 (97)
T ss_dssp CCCSCSCCEEEEC---CSCSEEEEECSST-TTTTCEEEEEEC
T ss_pred eecCCCCEEEEEe---CCCeEEEEEccCh-hhcCCEEEEEEC
Confidence 3478999999988 5799999999933 336999999984
No 95
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=97.65 E-value=3.2e-05 Score=61.80 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=31.5
Q ss_pred ccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
..+.||+++++.| +++|+||||||.| ..+||.|.|+|+
T Consensus 61 ~~~~pG~~~~~tf---~~~G~y~~~C~~H-~~~gM~G~i~V~ 98 (98)
T 1pcs_A 61 LLFAAGESFTSTF---TEPGTYTYYCEPH-RGAGMVGKVVVE 98 (98)
T ss_dssp EECSTTCEEEEEC---CSCEEEEEECGGG-TTTTCEEEEEEC
T ss_pred cccCCCCEEEEEc---CCCeEEEEEcCCc-cccCCeEEEEEC
Confidence 4589999999988 4799999999932 337999999985
No 96
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=97.64 E-value=0.00014 Score=76.20 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=72.0
Q ss_pred eEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCc---------------c-c--
Q 040938 108 AFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAV---------------Y-V-- 169 (487)
Q Consensus 108 ~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~---------------~-v-- 169 (487)
..+|||+.+. ....+.++.|++++|+|.|.+. ..+.|||+||.|+|++.+|. . .
T Consensus 385 ~~~iNg~~~~-------~~~~~~~~~g~~~~w~l~N~~~-~~HP~HlHG~~F~Vl~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (513)
T 2wsd_A 385 VLLLNNKRWH-------DPVTETPKVGTTEIWSIINPTR-GTHPIHLHLVSFRVLDRRPFDIARYQESGELSYTGPAVPP 456 (513)
T ss_dssp EEEETTBCTT-------SCCCBCCBTTCEEEEEEEECSS-SCEEEEESSCCEEEEEEEEBCHHHHHHHCCCCBSSCCBCC
T ss_pred eEeECCccCC-------CcccEecCCCCEEEEEEEcCCC-CCcCEeEeCceEEEEEecCcccccccccccccccCCCCCC
Confidence 4679998742 1245688999999999999875 46899999999999998762 1 0
Q ss_pred ---ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 170 ---KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 170 ---~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
+|...|++.|.||+++.|++++...+ |.|.+.|+..
T Consensus 457 ~~~~~~~rDTv~v~pg~~~~i~~~f~dnp--G~w~~HCHil 495 (513)
T 2wsd_A 457 PPSEKGWKDTIQAHAGEVLRIAATFGPYS--GRYVWHCHAL 495 (513)
T ss_dssp CGGGSSCBSEEEECTTEEEEEEEECCSCC--EEEEEEESCH
T ss_pred CccccCcccEEEeCCCCEEEEEEEecCCC--CCEEEEcCCh
Confidence 23478999999999999999995434 9999999853
No 97
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=97.60 E-value=3.7e-05 Score=61.38 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=31.3
Q ss_pred ccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
-.+.||+++++.|. ++|+||||||.| ..+||.|.|+|+
T Consensus 61 ~~~~pG~~~~~tf~---~~G~y~y~C~~H-~~~gM~G~i~V~ 98 (98)
T 2plt_A 61 YLNAPGETYSVKLT---AAGEYGYYCEPH-QGAGMVGKIIVQ 98 (98)
T ss_dssp EECSTTCEEEEECC---SCEEEEEECGGG-GGGTCEEEEEEC
T ss_pred eecCCCCEEEEEeC---CCeEEEEEcCCc-cccCCeEEEEEC
Confidence 35799999999884 699999999933 346999999984
No 98
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=97.58 E-value=0.00015 Score=60.82 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=51.1
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|+|++.| ..|.+.++... .... ...+.+.||+...+. ++.
T Consensus 24 ~i~V~~GDtVtf~n~~------~~H~v~~~~~~----------~P~g-------------~~~f~s~pGet~s~T--F~~ 72 (127)
T 3tu6_A 24 VIRAQPGDTVTFVAKD------KGHNSALMKGG----------APEG-------------AETWKGKINEEITVT--LSK 72 (127)
T ss_dssp EEEECTTCEEEEECSS------SSCCCEECTTC----------SCTT-------------CCCCBCCTTCCCEEE--CCS
T ss_pred EEEECCCCEEEEEECC------CCceEEEccCc----------CCCC-------------ccceecCCCCEEEEE--eCC
Confidence 5789999999998765 24666654210 0000 011222467654444 489
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
||.|.|||- .|...||.+.+.|.++.
T Consensus 73 pG~y~y~C~--~H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 73 PGVYMYQCA--PHVGMGMIGAIVVGEPA 98 (127)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEESSCT
T ss_pred CeEEEEEeC--CCCcCCcEEEEEECcCC
Confidence 999999999 69999999999998764
No 99
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=97.57 E-value=8.3e-05 Score=59.46 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=30.6
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
.+.||+++++.|. ++|+|+|||+.| ..+||.|.|+|+
T Consensus 63 ~~~~G~~~~~~f~---~~G~y~~~C~~H-~~~gM~G~i~V~ 99 (99)
T 1byp_A 63 LNAPGEEYSVTLT---EKGTYKFYCAPH-AGAGMVGKVTVN 99 (99)
T ss_dssp BCSTTCEEEEEEC---SCEEEEEECGGG-TTTTCEEEEEEC
T ss_pred eeCCCCEEEEEeC---CCcEEEEEcCCc-cccCCEEEEEEC
Confidence 4789999999884 799999999932 336999999984
No 100
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.57 E-value=0.0001 Score=61.47 Aligned_cols=39 Identities=8% Similarity=-0.011 Sum_probs=31.9
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPK 63 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 63 (487)
-+.||++|+|.| +.+|+|||||-.| ..+||.|.|+|.++
T Consensus 58 ~~~pg~t~s~TF---~~~G~y~Y~C~~H-~~~GM~G~I~V~~p 96 (124)
T 3ef4_A 58 KGGFSKEVVFNA---EKEGLYVLKCAPH-YGMGMVVLVQVGKP 96 (124)
T ss_dssp BCCTTCCEEEEC---CSSEEEEEECTTT-GGGTCEEEEEESSC
T ss_pred ccCCCCEEEEEe---CCCeEEEEEcCCC-CcCCCEEEEEECCC
Confidence 467999999998 4699999999633 23699999999875
No 101
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=97.56 E-value=0.00026 Score=59.04 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=52.0
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.++++.|++|+|++.| ..|.+.++.. ..... . +.+.+.||+...+.| +.
T Consensus 22 ~i~V~~GdtV~f~~~~------~~H~v~~~~~----------~~P~g--~-----------~~f~~~pg~t~s~TF--~~ 70 (123)
T 3erx_A 22 FVRAEPGDVINFVPTD------KSHNVEAIKE----------ILPEG--V-----------ESFKSKINESYTLTV--TE 70 (123)
T ss_dssp EEEECTTEEEEEEESS------TTCCCEECTT----------SSCTT--C-----------CCCBCCTTCCEEEEE--CS
T ss_pred EEEECCCCEEEEEECC------CCceEEEcCC----------cCCCC--c-----------cceecCCCCEEEEEe--CC
Confidence 5789999999999876 2466665421 00000 0 012234677666666 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
||.|.|+|- .|...||.+.+.|.++
T Consensus 71 pG~y~y~C~--~H~~~GM~G~I~V~~~ 95 (123)
T 3erx_A 71 PGLYGVKCT--PHFGMGMVGLVQVGDA 95 (123)
T ss_dssp CEEEEEECG--GGTTTTCEEEEEESSS
T ss_pred CeEEEEEeC--CCCcCCcEEEEEECCC
Confidence 999999999 8999999999999864
No 102
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=97.55 E-value=5e-05 Score=61.14 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=31.4
Q ss_pred ccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
-.+.||+++++.| +++|+|||||+ ....+||.|.|+|+
T Consensus 65 ~~~~pG~~~~~tf---~~~G~y~y~C~-~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 65 LLSEDEPSFKAKV---STPGTYTFYCT-PHKSANMKGTLTVK 102 (102)
T ss_dssp CBBTTBCEEEECC---CSCEEEEEECS-TTGGGTCEEEEEEC
T ss_pred eecCCCCEEEEEe---CCCeEEEEEeC-CCcccCCeEEEEEC
Confidence 3479999999988 57999999999 22347999999985
No 103
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=97.54 E-value=5.6e-05 Score=59.35 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=31.2
Q ss_pred ccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
..+.||+++++.| +++|+||||||.|. .+||.|.|+|+
T Consensus 54 ~~~~~g~~~~~~f---~~~G~y~~~C~~H~-~~gM~g~i~V~ 91 (91)
T 1bxv_A 54 LAFSPGETFEATF---SEPGTYTYYCEPHR-GAGMVGKIVVQ 91 (91)
T ss_dssp EECSTTCEEEEEC---CSCEEEEEECTTTG-GGTCEEEEEEC
T ss_pred ceeCCCCEEEEEe---CCCEEEEEEeCCCc-cCCCEEEEEEC
Confidence 4589999999887 57999999999432 35999999984
No 104
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.53 E-value=0.00025 Score=59.11 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=51.9
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.++++.|++|+|+..+ ..|.+..+.. .+... .+.+.+.+|+...+.| +.
T Consensus 23 ~i~V~~GDTV~f~n~~------~~Hnv~~~~~----------~~p~g-------------~~~~~~~pg~t~s~TF--~~ 71 (124)
T 3ef4_A 23 FVKVEAGDTVKFVPTD------KSHNAESVRE----------VWPEG-------------VAPVKGGFSKEVVFNA--EK 71 (124)
T ss_dssp EEEECTTCEEEEECSS------SSCCCEECTT----------TSCTT-------------SCCCBCCTTCCEEEEC--CS
T ss_pred EEEECCCCEEEEEECC------CCccEEEeCC----------cCCCC-------------ccccccCCCCEEEEEe--CC
Confidence 5789999999998653 4687776521 11100 0122344677655555 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
||.|.|||- .|...||.+.+.|.++
T Consensus 72 ~G~y~Y~C~--~H~~~GM~G~I~V~~p 96 (124)
T 3ef4_A 72 EGLYVLKCA--PHYGMGMVVLVQVGKP 96 (124)
T ss_dssp SEEEEEECT--TTGGGTCEEEEEESSC
T ss_pred CeEEEEEcC--CCCcCCCEEEEEECCC
Confidence 999999995 8999999999999764
No 105
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=97.49 E-value=9.8e-05 Score=59.05 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=30.6
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
.+.||+++++.|. ++|+|||||+.| ..+||.|.|+|+
T Consensus 63 ~~~~G~~~~~tf~---~~G~y~~~C~~H-~~~gM~G~i~V~ 99 (99)
T 1plc_A 63 LNAKGETFEVALS---NKGEYSFYCSPH-QGAGMVGKVTVN 99 (99)
T ss_dssp BCSTTCEEEEECC---SCEEEEEECGGG-TTTTCEEEEEEC
T ss_pred ccCCCCEEEEEEC---CCceEEEEcCCC-cccCCEEEEEEC
Confidence 4789999999884 799999999932 336999999984
No 106
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=97.39 E-value=0.00023 Score=59.41 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCCC
Q 040938 22 IQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPKR 64 (487)
Q Consensus 22 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~ 64 (487)
+.||++++|.| +.+|+|||+|..|. .+||.|.|+|.++.
T Consensus 58 ~~pG~t~~~tF---~~~G~y~y~C~~H~-~~gM~G~I~V~~~~ 96 (123)
T 1pmy_A 58 TTVGQEAVVKF---DKEGVYGFKCAPHY-MMGMVALVVVGDKR 96 (123)
T ss_dssp CCTTSCEEEEC---CSCEEEEEECSTTT-TTTCEEEEEESSCC
T ss_pred cCCCCEEEEEe---CCCeEEEEEeCCcc-ccCCEEEEEEcCCC
Confidence 57999998888 46999999997432 26999999998643
No 107
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.39 E-value=0.00011 Score=58.92 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=33.3
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
.+.||++.+|.|+. +.+|+|.|+|..|. ..||.|.|+|+
T Consensus 62 ~~~pg~~~~~~~t~-~~~G~Y~y~C~~H~-~~gM~G~i~Ve 100 (100)
T 4hci_A 62 VVESGKEKNITVKP-KSAGTYELICRYHL-LKGMEGKVIVK 100 (100)
T ss_dssp EECTTCEEEEEECC-CSCEEEEEECTTTG-GGTCEEEEEEC
T ss_pred eecCCcceeEEEec-ccCceEEEECcccc-CCCCEEEEEEC
Confidence 47899999999996 89999999997542 26999999996
No 108
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=97.38 E-value=0.00076 Score=53.72 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=54.1
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|+ |.+ ...|.+.+.... +. ..++. ...-.+...+.+|+...+.| +.
T Consensus 19 ~i~v~~GdtV~~~--n~~---~~~H~v~~~~~~----------~p-----~g~~~-~~~~~~~~~~~~g~~~~~tf--~~ 75 (98)
T 1iuz_A 19 KISVAAGEAIEFV--NNA---GFPHNIVFDEDA----------VP-----AGVDA-DAISYDDYLNSKGETVVRKL--ST 75 (98)
T ss_dssp EEEECTTCEEEEE--ECS---SCCEEEEECTTS----------SC-----TTCCH-HHHCEEEEECSTTCEEEEEC--CS
T ss_pred EEEECCCCEEEEE--ECC---CCCEEEEEeCCC----------Cc-----ccccc-ccccccccccCCCCEEEEEc--CC
Confidence 5789999999996 543 357776655311 00 00000 00013346788998877766 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|+|-+ |...||.+.+.|+
T Consensus 76 ~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 76 PGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp CEEEEEECTT--TGGGTCEEEEEEC
T ss_pred CEEEEEEchh--hccCCCEEEEEEC
Confidence 9999999986 9999999999884
No 109
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=97.36 E-value=0.00013 Score=62.35 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=36.0
Q ss_pred cCCCCCeEEEEEEeCCCccceeecccccccc-ccceeeEEEeC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLR-ATLYGPIVILP 62 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~ 62 (487)
.|.||++.++.|++ +.+|+|||||+..+.. .||.|.|+|.+
T Consensus 99 ~l~pG~~~~~~~~~-~~~G~y~f~C~~~~H~~~GM~g~i~V~p 140 (140)
T 1qhq_A 99 MLNAGESGSVTFRT-PAPGTYLYICTFPGHYLAGMKGTLTVTP 140 (140)
T ss_dssp CBCTTEEEEEEEEC-CSSEEEEEECCSTTTTTTTCEEEEEEEC
T ss_pred eeCCCceeEEEEEe-CCCeeEEEEeCCcCHhhcCCEEEEEEcC
Confidence 47899999999997 7899999999986655 79999999964
No 110
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.36 E-value=0.00017 Score=61.13 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=32.4
Q ss_pred cccccCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 17 ITQCPIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 17 vtq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
...-.+.||++++|.| +++|+|||||-.|. ||.|.|+|+
T Consensus 94 ~~s~~l~pG~t~~~tF---~~~G~y~y~C~~H~---gM~G~I~V~ 132 (132)
T 3c75_A 94 FRGEMMTKDQAYAITF---NEAGSYDYFCTPHP---FMRGKVIVE 132 (132)
T ss_dssp EECCCBCTTEEEEEEE---CSCEEEEEECSSCT---TCEEEEEEC
T ss_pred ccccccCCCCEEEEEc---CCCEEEEEEeCCCc---CCEEEEEEC
Confidence 3444689999999998 47999999997754 999999985
No 111
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=97.34 E-value=0.0003 Score=58.68 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=30.9
Q ss_pred CCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCC
Q 040938 22 IQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPK 63 (487)
Q Consensus 22 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 63 (487)
..||++++|.| +.+|+|||+|..|. .+||.|.|+|.++
T Consensus 58 ~~pG~t~~~tF---~~~G~y~y~C~~H~-~~gM~G~I~V~~~ 95 (123)
T 1paz_A 58 SKINENYVLTV---TQPGAYLVKCTPHY-AMGMIALIAVGDS 95 (123)
T ss_dssp CCTTCCEEEEC---CSCEEEEEECTTTG-GGTCEEEEEESSS
T ss_pred cCCCCEEEEEe---CCCEEEEEEeCCcc-cCCCEEEEEEcCC
Confidence 46999988888 46999999997432 2699999999874
No 112
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.28 E-value=0.0002 Score=60.30 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=36.0
Q ss_pred cCCCCCeEEEEEEeC--CCccceeeccccccccccceeeEEEeC
Q 040938 21 PIQTGQSYVYNFTVT--GQRGTLFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~--~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
-|.||++++..|+++ .++|+|||.|-..+.+.||.|.|+|.+
T Consensus 86 ~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~~M~G~i~V~~ 129 (129)
T 1cuo_A 86 IIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFSMMRGTLKLEE 129 (129)
T ss_dssp CBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTTTSEEEEEEEC
T ss_pred EECCCCEEEEEEeccccCCCceEEEEeCCCCchHcCEEEEEEeC
Confidence 378999999999973 389999999987776669999999964
No 113
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.25 E-value=0.0011 Score=53.68 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=49.9
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|+ |.+ ...|.+++....- |. . .-++-.+.+|+...+.| +.
T Consensus 35 ~i~V~~G~tV~~~--N~d---~~~H~v~~~~~~~-------~~-------~--------~~~s~~l~~g~~~~~tf--~~ 85 (106)
T 1id2_A 35 EVTIKAGETVYWV--NGE---VMPHNVAFKKGIV-------GE-------D--------AFRGEMMTKDQAYAITF--NE 85 (106)
T ss_dssp EEEECTTCEEEEE--ECS---SSCBCCEECTTTS-------SS-------S--------CEECCCBCTTEEEEEEE--CS
T ss_pred EEEECCCCEEEEE--ECC---CCcEEEEEeCCCC-------Cc-------c--------cccccccCCCCEEEEEe--CC
Confidence 5789999999987 643 3567776653210 00 0 01223467888777766 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|+|-+ |. ||.+.+.|+
T Consensus 86 ~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 86 AGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp CEEEEEECSS--CT--TCEEEEEEC
T ss_pred CEEEEEEeCC--CC--CCEEEEEEC
Confidence 9999999987 76 999999884
No 114
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.24 E-value=0.00019 Score=62.98 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=35.7
Q ss_pred cCCCCCeEEEEEEeC-CCccceeeccccccccccceeeEEEeC
Q 040938 21 PIQTGQSYVYNFTVT-GQRGTLFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
-|.||+++++.|+++ -++|+|||+|-..+.+.||.|.|+|.+
T Consensus 125 ~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~gM~G~i~V~~ 167 (167)
T 3ay2_A 125 LIGGGEESSLTLDPAKLADGDYKFACTFPGHGALMNGKVTLVD 167 (167)
T ss_dssp CBCTTCEEEEEECGGGGTTSCEEEECCSTTGGGTSEEEEEEEC
T ss_pred eeCCCCEEEEEEecCCCCCcEEEEEcCCCCchhcCEEEEEEeC
Confidence 379999999999863 279999999987766669999999964
No 115
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=97.22 E-value=0.0015 Score=69.90 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=70.4
Q ss_pred eEEEcCcCCCCCCCCCCceeeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCccc------------------
Q 040938 108 AFTINGLPGPLYNCSAKDTFKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYV------------------ 169 (487)
Q Consensus 108 ~~lvNG~~~~~~~~~~~~~~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v------------------ 169 (487)
...+||+... ....+.++.|++++|.|+|.+. ..+.|||+||.|+||+.+|...
T Consensus 460 ~~~~n~~~~~-------~~~~~~~~~g~~~~w~i~N~~~-~~HP~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~~~~~~ 531 (612)
T 3gyr_A 460 TYRRTARTFN-------DGLGFTIGEGTHEQWTFLNLSP-ILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDP 531 (612)
T ss_dssp EEEEEECSTT-------SCCCEEEETTCEEEEEEEECSS-SCEEEEESSCEEEEEEEEEEECTTEETTTTEESSCEEEEE
T ss_pred cccccCccCC-------CCcceEeCCCCEEEEEEEcCCC-CCcCEeECCCcEEEEeecCCcCcccccccccccccccccc
Confidence 4567776531 2356889999999999999986 4689999999999999876422
Q ss_pred ---------ceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 170 ---------KPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 170 ---------~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
++-..|++.|.+|+.+.|.+++...+ |.|.+.|+.+
T Consensus 532 ~~~~~~~~~~~~~kDTv~v~~~~~v~i~~rfadnp--G~w~~HCHil 576 (612)
T 3gyr_A 532 DTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAY--GRFMYHCHLL 576 (612)
T ss_dssp EEECCCCTTCSSCBSEEEECSSEEEEEEEECCSCC--EEEEEEESSH
T ss_pred ccccCcccccCCCCcEEEECCCCEEEEEEEeCCCC--cceEEcCCCh
Confidence 12236999999999999999965444 9999999853
No 116
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.11 E-value=0.0016 Score=54.90 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=50.5
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|+|+ |.+ ...|.+++.... .|. ..+ ++-.+.+|+...+.| +.
T Consensus 61 ~i~V~~GdtV~~~--N~d---~~~H~v~~~~~~-------~g~--------------~~~-~s~~l~pG~t~~~tF--~~ 111 (132)
T 3c75_A 61 EVTIKAGETVYWV--NGE---VMPHNVAFKKGI-------VGE--------------DAF-RGEMMTKDQAYAITF--NE 111 (132)
T ss_dssp EEEECTTCEEEEE--ECS---SSCBCCEECTTT-------SSS--------------SCE-ECCCBCTTEEEEEEE--CS
T ss_pred EEEECCCCEEEEE--ECC---CCceEEEEeCCC-------CCc--------------ccc-cccccCCCCEEEEEc--CC
Confidence 5789999999987 643 357887765321 010 001 233467888777776 79
Q ss_pred CeeEEEeecchhhhhccceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
||.|.|||-+ |. ||.+.+.|+
T Consensus 112 ~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 112 AGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp CEEEEEECSS--CT--TCEEEEEEC
T ss_pred CEEEEEEeCC--Cc--CCEEEEEEC
Confidence 9999999987 76 999999884
No 117
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.08 E-value=0.00085 Score=55.83 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=31.2
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEeCC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVILPK 63 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 63 (487)
-+.||++++|.| +++|+|||+|-.|.. |.|.|+|.+.
T Consensus 57 ~~~~g~t~~~tF---~~~G~y~y~C~~H~~---M~G~I~V~~~ 93 (122)
T 2ux6_A 57 KSKINENYKVTF---TAPGVYGVKCTPHPF---MVGVVQVGDA 93 (122)
T ss_dssp BCCTTCCEEEEE---CSCEEEEEEETTEEE---EEEEEEESSS
T ss_pred ecCCCCEEEEEe---CCCEEEEEEeCCCcc---CEEEEEEeCC
Confidence 357899999999 469999999987554 9999999874
No 118
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=97.05 E-value=0.00044 Score=55.13 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=30.9
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
.+.||+++++.| +.+|+|||+|-.|. .+||.|.|+|+
T Consensus 62 ~~~~g~~~~~tf---~~~G~y~y~C~~H~-~~gM~G~I~V~ 98 (98)
T 1iuz_A 62 LNSKGETVVRKL---STPGVYGVYCEPHA-GAGMKMTITVQ 98 (98)
T ss_dssp ECSTTCEEEEEC---CSCEEEEEECTTTG-GGTCEEEEEEC
T ss_pred ccCCCCEEEEEc---CCCEEEEEEchhhc-cCCCEEEEEEC
Confidence 478999999988 57999999998643 25999999984
No 119
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=96.99 E-value=0.0028 Score=52.77 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=48.8
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|.|+..+ ..|.+.++- + .. +.. .. .+.+.+|+... ++++.
T Consensus 22 ~i~V~~GdtV~f~~~~------~~H~v~~~~--------~--~~-p~~-~~-----------~~~~~pG~t~~--~tF~~ 70 (123)
T 1paz_A 22 YIKANPGDTVTFIPVD------KGHNVESIK--------D--MI-PEG-AE-----------KFKSKINENYV--LTVTQ 70 (123)
T ss_dssp EEEECTTCEEEEEESS------SSCCCEECT--------T--CS-CTT-CC-----------CCBCCTTCCEE--EECCS
T ss_pred EEEECCCCEEEEEECC------CCeEEEEec--------c--cC-CCC-cc-----------ceecCCCCEEE--EEeCC
Confidence 5788999999997654 246665541 1 00 000 00 11224676544 45589
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
||.|.|+|- .|...||.+.+.|.++
T Consensus 71 ~G~y~y~C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 71 PGAYLVKCT--PHYAMGMIALIAVGDS 95 (123)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEESSS
T ss_pred CEEEEEEeC--CcccCCCEEEEEEcCC
Confidence 999999997 5999999999999764
No 120
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=96.94 E-value=0.0022 Score=53.38 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=48.8
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|++|.|+..+ ..|.+.++- + .. +.. . ..+.+.+|+...+ +++.
T Consensus 22 ~i~V~~GdtV~f~n~~------~~H~v~~~~--------~--~~-p~~-~-----------~~~~~~pG~t~~~--tF~~ 70 (123)
T 1pmy_A 22 LVRLKPGDSIKFLPTD------KGHNVETIK--------G--MA-PDG-A-----------DYVKTTVGQEAVV--KFDK 70 (123)
T ss_dssp EEEECTTCEEEEECSS------SSCCCEECT--------T--SS-CTT-C-----------CCCBCCTTSCEEE--ECCS
T ss_pred EEEECCCCEEEEEECC------CCcEEEEec--------c--cC-CCC-c-----------cceecCCCCEEEE--EeCC
Confidence 5788999999987543 246555541 1 00 000 0 0122346775554 4489
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
||.|.|+|- .|...||.+.+.|.++
T Consensus 71 ~G~y~y~C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 71 EGVYGFKCA--PHYMMGMVALVVVGDK 95 (123)
T ss_dssp CEEEEEECS--TTTTTTCEEEEEESSC
T ss_pred CeEEEEEeC--CccccCCEEEEEEcCC
Confidence 999999998 5999999999999764
No 121
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=96.87 E-value=0.0009 Score=56.12 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=35.3
Q ss_pred cCCCCCeEEEEEEeC-CCccc-eeeccccccccccceeeEEEeC
Q 040938 21 PIQTGQSYVYNFTVT-GQRGT-LFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~-~~~Gt-~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
-|.||++++..|+++ -++|+ |+|.|-..+.+.||.|.|+|.+
T Consensus 85 ~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~gM~G~i~V~~ 128 (128)
T 2iaa_C 85 VIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWSIMKGTIELGS 128 (128)
T ss_dssp CBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTTTSEEEEEECC
T ss_pred eeCCCCEEEEEEeccccCCCceEEEEECCCChhHCCEEEEEEeC
Confidence 379999999999973 17885 9999988777779999999963
No 122
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=96.85 E-value=0.0009 Score=56.21 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=34.6
Q ss_pred cCCCCCeEEEEEEeC-CCccc-eeeccccccccccceeeEEEeC
Q 040938 21 PIQTGQSYVYNFTVT-GQRGT-LFWHAHISWLRATLYGPIVILP 62 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~-~~~Gt-~wYH~H~~~~~~Gl~G~liV~~ 62 (487)
-|.||++++..|+++ -.+|+ |||.|-..+.+.||.|.|+|.+
T Consensus 86 ~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~gM~G~i~V~~ 129 (129)
T 2ccw_A 86 VIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWAMMKGTLKLGS 129 (129)
T ss_dssp CBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGGTSEEEEEECC
T ss_pred EECCCCEEEEEEeccccCCCceEEEEeCCCChhHcCEEEEEEeC
Confidence 379999999999973 15665 9999987777669999999963
No 123
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=96.84 E-value=0.0011 Score=53.60 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=30.3
Q ss_pred cCCCCCeEEEEEEeCCCccceeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
.|.||+++++.| +.+|+|+|+|-.|. ||.|.|+|+
T Consensus 72 ~l~~g~~~~~tf---~~~G~y~~~C~~H~---~M~G~I~V~ 106 (106)
T 1id2_A 72 MMTKDQAYAITF---NEAGSYDYFCTPHP---FMRGKVIVE 106 (106)
T ss_dssp CBCTTEEEEEEE---CSCEEEEEECSSCT---TCEEEEEEC
T ss_pred ccCCCCEEEEEe---CCCEEEEEEeCCCC---CCEEEEEEC
Confidence 478999999988 47999999998764 999999984
No 124
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=96.80 E-value=0.0016 Score=57.00 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=61.1
Q ss_pred EEEe-cCCCEEEEEEeeCCCC--CCCCCCeeecCCc-eEEE-----EecCCCCCCCCCCCCCCCCCCCccceEEecCCcE
Q 040938 364 AVAL-PFNASVEVVMQDTSII--GAESHPLHLHGFN-FFVV-----GQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGW 434 (487)
Q Consensus 364 ~~~v-~~g~~v~~~l~n~~~~--~~~~HP~HlHg~~-f~Vl-----~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~ 434 (487)
-++| +.|+.|.|+|.|.+.. .++.|-|-|=... +.-+ ..+...|-+.. ..-....+..|.||+.
T Consensus 59 ~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~-------d~~vl~~t~~l~pGet 131 (167)
T 3ay2_A 59 DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPD-------DARVVAHTKLIGGGEE 131 (167)
T ss_dssp EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTT-------CTTEEEECCCBCTTCE
T ss_pred eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccccccc-------ccchhccceeeCCCCE
Confidence 4688 8999999999997531 0123554432110 0000 00000010000 0011334567899999
Q ss_pred EEEEEEcC--CCeeEEEeecchhhhhccceEEEEEe
Q 040938 435 VAIRFLAD--NPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 435 ~~irf~~d--npG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
..|.|.++ .||.|-|+|-+--|.. ||-+.+.|.
T Consensus 132 ~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 132 SSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp EEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred EEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 99999987 8999999999999988 999999986
No 125
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.68 E-value=0.0072 Score=62.56 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=60.7
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
..+.++.|+.|+|++.|.....+..|.|.+.+... -+.+.||....+.|+++
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~IPslGI----------------------------K~DaiPGrtnsvtFtad 609 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHGV----------------------------SMEISPQQTSSITFVAD 609 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTE----------------------------EEEECTTCEEEEEEECC
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeEecCCCc----------------------------eeeeCCCCeEEEEEEcC
Confidence 35779999999999999632224677776655321 23677899999999999
Q ss_pred CCeeEEEeecchhhh-hccceEEEEEeC
Q 040938 443 NPGAWFMHCHLEVHT-SWGLKMAWIVND 469 (487)
Q Consensus 443 npG~w~~HCHi~~H~-~~GM~~~~~V~~ 469 (487)
.||.|.++|...-|. ..+|.+.+.|++
T Consensus 610 kPGvY~y~CSE~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 610 KPGLHWYYCSWFCHALHMEMVGRMMVEP 637 (638)
T ss_dssp SCEEEEEECCSCCSTTCTTCEEEEEEEC
T ss_pred CCEEEEEECCCcCCCCcccceEEEEEec
Confidence 999999999976554 358999999874
No 126
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=96.62 E-value=0.0015 Score=54.73 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=34.2
Q ss_pred cCCCCCeEEEEEEeC-CCccc-eeeccccccccccceeeEEEe
Q 040938 21 PIQTGQSYVYNFTVT-GQRGT-LFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~-~~~Gt-~wYH~H~~~~~~Gl~G~liV~ 61 (487)
-|.||++++..|+++ -.+|+ |||.|-..+.+.||.|.|+|.
T Consensus 86 ~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~gM~G~i~V~ 128 (128)
T 1nwp_A 86 VIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHISMMKGTVTLK 128 (128)
T ss_dssp CBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGGGSEEEEEEC
T ss_pred eeCCCCEEEEEEeccccCCCceEEEEECCCChhHCCEEEEEEC
Confidence 379999999999973 16777 999998877666999999984
No 127
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=96.50 E-value=0.0043 Score=52.04 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=61.4
Q ss_pred EEEecCC-CEEEEEEeeCCCCC--CCCCCeeecCCceEEEEecC-----------C---CCCCCCCCCCCCCCCCCccce
Q 040938 364 AVALPFN-ASVEVVMQDTSIIG--AESHPLHLHGFNFFVVGQGF-----------G---NFDPSKDPAKFNLVDPAERNT 426 (487)
Q Consensus 364 ~~~v~~g-~~v~~~l~n~~~~~--~~~HP~HlHg~~f~Vl~~g~-----------g---~~~~~~~~~~~n~~~p~~rDt 426 (487)
-++++.| +.|.+++.|.+... .+.|-|-| ...+. | .|-+..+ .-....+
T Consensus 19 ~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi-------~~~~~~~~~~~~~m~~~~~~~~v~~~~-------~~~~~~t 84 (129)
T 1cuo_A 19 SISVPASCAEFTVNFEHKGHMPKTGMGHNWVL-------AKSADVGDVAKEGAHAGADNNFVTPGD-------KRVIAFT 84 (129)
T ss_dssp EEEEETTCSEEEEEEEECSSSCHHHHCBCCEE-------EEGGGHHHHHHHHHTTCGGGTTSCTTC-------TTCSEEC
T ss_pred eEEEcCCCeEEEEEEEECCCCcccccccceEE-------ecCcchhhhHHHhhhcccccccccccc-------ccceeee
Confidence 5789999 99999999975311 13355443 22210 0 1110000 0012345
Q ss_pred EEecCCcEEEEEEEcC---CCeeEEEeecchhhhhccceEEEEEe
Q 040938 427 VGVPSGGWVAIRFLAD---NPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 427 v~v~~~~~~~irf~~d---npG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
..|.||+...|.|.++ .||.|-|.|-+--|.. ||-+.+.|+
T Consensus 85 ~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 85 PIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred eEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 6688999999999997 9999999999999988 899999985
No 128
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=96.19 E-value=0.013 Score=48.53 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=47.7
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
.+.++.|+.|.|+..+ ..|.+++..- .+... . ..+.+.+|+...+.| +.
T Consensus 22 ~i~V~~GdtV~f~n~d------~~H~v~~~~~----------~~p~~--~-----------~~~~~~~g~t~~~tF--~~ 70 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTD------KGHNVETIKG----------MIPDG--A-----------EAFKSKINENYKVTF--TA 70 (122)
T ss_dssp EEEECTTEEEEEEESS------SSCCCEECTT----------CSCTT--C-----------CCCBCCTTCCEEEEE--CS
T ss_pred EEEECCCCEEEEEECC------CCcEEEEccc----------ccCCC--c-----------ceeecCCCCEEEEEe--CC
Confidence 5789999999997542 2577766541 11100 0 011234677655555 89
Q ss_pred CeeEEEeecchhhhhccceEEEEEeCC
Q 040938 444 PGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
||.|.|+|-+ |.. |.+.+.|.+.
T Consensus 71 ~G~y~y~C~~--H~~--M~G~I~V~~~ 93 (122)
T 2ux6_A 71 PGVYGVKCTP--HPF--MVGVVQVGDA 93 (122)
T ss_dssp CEEEEEEETT--EEE--EEEEEEESSS
T ss_pred CEEEEEEeCC--Ccc--CEEEEEEeCC
Confidence 9999999987 766 9999999764
No 129
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.09 E-value=0.027 Score=47.54 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=52.2
Q ss_pred EEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCC
Q 040938 365 VALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNP 444 (487)
Q Consensus 365 ~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnp 444 (487)
+.++.|+.|+|++.|.+ ..|. |.|-+. .--+.+.||....+.|+++.|
T Consensus 62 l~Vp~G~~V~~~vts~D----V~Hs-------f~ip~~---------------------~~k~d~~PG~~~~~~~~~~~~ 109 (135)
T 2cua_A 62 IEVPQGAEIVFKITSPD----VIHG-------FHVEGT---------------------NINVEVLPGEVSTVRYTFKRP 109 (135)
T ss_dssp EEEETTSEEEEEEEBSS----SCEE-------EEETTS---------------------SCEEEECBTBCEEEEEECCSC
T ss_pred EEEcCCCEEEEEEEeCC----ccce-------EEecCC---------------------CceeEeCCCCcEEEEEEcCCC
Confidence 67899999999999853 3444 433111 112456778888899999999
Q ss_pred eeEEEeecc---hhhhhccceEEEEEe
Q 040938 445 GAWFMHCHL---EVHTSWGLKMAWIVN 468 (487)
Q Consensus 445 G~w~~HCHi---~~H~~~GM~~~~~V~ 468 (487)
|.|.++|.. ..| .+|-+.+.|.
T Consensus 110 G~y~~~C~e~CG~~H--~~M~g~v~V~ 134 (135)
T 2cua_A 110 GEYRIICNQYCGLGH--QNMFGTIVVK 134 (135)
T ss_dssp EEEEEECCSCCSTTS--TTCEEEEEEE
T ss_pred EEEEEECcccCCCCc--CCCEEEEEEE
Confidence 999999977 667 4999998885
No 130
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=96.05 E-value=0.013 Score=49.01 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=59.7
Q ss_pred EEEe-cCCCEEEEEEeeCCCC--CCCCCCeeecCCc-eEE-----EEecC-CCCCCCCCCCCCCCCCCCccceEEecCCc
Q 040938 364 AVAL-PFNASVEVVMQDTSII--GAESHPLHLHGFN-FFV-----VGQGF-GNFDPSKDPAKFNLVDPAERNTVGVPSGG 433 (487)
Q Consensus 364 ~~~v-~~g~~v~~~l~n~~~~--~~~~HP~HlHg~~-f~V-----l~~g~-g~~~~~~~~~~~n~~~p~~rDtv~v~~~~ 433 (487)
-+++ +.|+.|.+++.|.+.. ..+.|-|-|=... ++- +..+. ..|-+..+ .-....+..|.||+
T Consensus 19 ~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~t~~l~pGe 91 (129)
T 2ccw_A 19 EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGD-------TRVIAHTKVIGGGE 91 (129)
T ss_dssp EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTC-------TTEEEECCCBCTTC
T ss_pred eEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccccccc-------ccceeeeeEECCCC
Confidence 4688 8899999999997531 1123554432110 000 00000 00100000 00122455689999
Q ss_pred EEEEEEEcC--CCee-EEEeecchhhhhccceEEEEEe
Q 040938 434 WVAIRFLAD--NPGA-WFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 434 ~~~irf~~d--npG~-w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
...|.|.++ .+|. |-|.|-+--|.. ||-+.+.|.
T Consensus 92 t~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 92 SDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred EEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 999999998 7865 999999999988 899999985
No 131
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=95.84 E-value=0.029 Score=46.80 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=38.2
Q ss_pred ceEEecCCcEEEEEEEcC--CCee-EEEeecchhhhhccceEEEEEe
Q 040938 425 NTVGVPSGGWVAIRFLAD--NPGA-WFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 425 Dtv~v~~~~~~~irf~~d--npG~-w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
.+..|.||+...|.|.+. .+|. |-|.|-+--|.. ||-+.+.|.
T Consensus 82 ~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 82 HTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp ECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred cceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 455689999999999998 8995 999999999988 999999985
No 132
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=95.40 E-value=0.058 Score=44.95 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=59.5
Q ss_pred EEEe-cCCCEEEEEEeeCCCC--CCCCCCeeecCCc-eEEEE---ecCC---CCCCCCCCCCCCCCCCCccceEEecCCc
Q 040938 364 AVAL-PFNASVEVVMQDTSII--GAESHPLHLHGFN-FFVVG---QGFG---NFDPSKDPAKFNLVDPAERNTVGVPSGG 433 (487)
Q Consensus 364 ~~~v-~~g~~v~~~l~n~~~~--~~~~HP~HlHg~~-f~Vl~---~g~g---~~~~~~~~~~~n~~~p~~rDtv~v~~~~ 433 (487)
-+.+ +.|+.|.+++.|.+.. ..+.|-|-|=... ++-+. ...| .|-+..+ .-....|-.|.||+
T Consensus 19 ~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~-------~~~~~~t~~l~pGe 91 (128)
T 1nwp_A 19 DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGD-------ARVIAHTKVIGAGE 91 (128)
T ss_dssp EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTC-------TTEEEECCCBCTTC
T ss_pred EEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccccccc-------chhheeeeeeCCCC
Confidence 4788 8999999999997531 0123655442110 00000 0000 0000000 00123344689999
Q ss_pred EEEEEEEcC--CCee-EEEeecchhhhhccceEEEEEe
Q 040938 434 WVAIRFLAD--NPGA-WFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 434 ~~~irf~~d--npG~-w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
...|.|.+. .+|. |-|.|-+--|.. ||-+.+.|.
T Consensus 92 t~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 92 KDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp EEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred EEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 999999997 7876 999999999988 899999873
No 133
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.27 E-value=0.014 Score=60.48 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=36.1
Q ss_pred ccCCCCCeEEEEEEeCCCccceeeccccc-ccc-ccceeeEEEeCC
Q 040938 20 CPIQTGQSYVYNFTVTGQRGTLFWHAHIS-WLR-ATLYGPIVILPK 63 (487)
Q Consensus 20 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~~~-~Gl~G~liV~~~ 63 (487)
.-+.||++.++.|++ +++|+|||+|..- +.. .+|.|.|+|+++
T Consensus 594 ~DaiPGrtnsvtFta-dkPGvY~y~CSE~CGa~Hs~M~G~ViVEPa 638 (638)
T 3sbq_A 594 MEISPQQTSSITFVA-DKPGLHWYYCSWFCHALHMEMVGRMMVEPA 638 (638)
T ss_dssp EEECTTCEEEEEEEC-CSCEEEEEECCSCCSTTCTTCEEEEEEECC
T ss_pred eeeCCCCeEEEEEEc-CCCEEEEEECCCcCCCCcccceEEEEEecC
Confidence 357899999999997 8999999999853 332 789999999864
No 134
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=94.85 E-value=0.021 Score=47.25 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCCCCeEEEEEEeC--CCccceeeccccccccccceeeEEEe
Q 040938 22 IQTGQSYVYNFTVT--GQRGTLFWHAHISWLRATLYGPIVIL 61 (487)
Q Consensus 22 I~PG~~~~Y~f~~~--~~~Gt~wYH~H~~~~~~Gl~G~liV~ 61 (487)
|.||++++..|+.+ ..+|+|.|-|- +.+ ||.|.|+|.
T Consensus 87 l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~-~M~G~v~V~ 125 (125)
T 3fsa_A 87 IGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA-AMKGTLTLK 125 (125)
T ss_dssp BCTTCEEEEEEEGGGC---CCEEEECS--SST-TCEEEEEEC
T ss_pred eCCCcEEEEEEeCcCcCCCccEEEEcC--CCC-CcEEEEEEC
Confidence 79999999999974 27999999999 444 999999984
No 135
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=93.84 E-value=0.31 Score=42.51 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=54.5
Q ss_pred EEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCCC
Q 040938 365 VALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADNP 444 (487)
Q Consensus 365 ~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dnp 444 (487)
+.++.|+.|+|.+.|.. ..|.|.+=... --+.+.||....+.|.++.|
T Consensus 95 l~VP~G~~Vr~~vTS~D----ViHsf~IP~lg----------------------------ik~da~PG~~n~~~~~~~kp 142 (168)
T 3s8f_B 95 IEVPQGAEIVFKITSPD----VIHGFHVEGTN----------------------------INVEVLPGEVSTVRYTFKRP 142 (168)
T ss_dssp EEEETTSEEEEEEECSS----SCEEEEETTSS----------------------------CEEEECTTBCEEEEEECCSC
T ss_pred EEEeCCCeEEEEEecCC----ceEEEEECCCC----------------------------eEEEecCCceeEEEEEeCCC
Confidence 57899999999999853 45665543221 12456688888899999999
Q ss_pred eeEEEeecc-hhhhhccceEEEEEe
Q 040938 445 GAWFMHCHL-EVHTSWGLKMAWIVN 468 (487)
Q Consensus 445 G~w~~HCHi-~~H~~~GM~~~~~V~ 468 (487)
|.|.+.|.. --+...+|.+.+.|+
T Consensus 143 G~y~g~Cse~CG~~Hs~M~g~V~V~ 167 (168)
T 3s8f_B 143 GEYRIICNQYCGLGHQNMFGTIVVK 167 (168)
T ss_dssp EEEEEECCSCCSTTGGGCEEEEEEE
T ss_pred EEEEEECCcCCCCCcCCCEEEEEEe
Confidence 999999985 445567999999886
No 136
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=93.49 E-value=0.31 Score=40.17 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=57.0
Q ss_pred EEEecC-CCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecC--CCCCC--CCCCCCCCC----CCCCccceEEecCCcE
Q 040938 364 AVALPF-NASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGF--GNFDP--SKDPAKFNL----VDPAERNTVGVPSGGW 434 (487)
Q Consensus 364 ~~~v~~-g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~--g~~~~--~~~~~~~n~----~~p~~rDtv~v~~~~~ 434 (487)
-+.++. |+.|+++|.|.+. . |--.=||.|-+...+. +.... ...+ .-++ +....-.|..|.||+.
T Consensus 19 ~i~V~~~Ge~V~~~l~N~G~---~--p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~-~~~y~~~~d~~via~t~~l~pGes 92 (125)
T 3fsa_A 19 AITVDKSCKQFTVNLSHPGN---L--PKNVMGHNWVLSTAADMQGVVTDGMASGL-DKDYLKPDDSRVIAHTKLIGSGEK 92 (125)
T ss_dssp EEEECTTCSEEEEEEECCSS---C--CHHHHCBCCEEEEHHHHHHHHHHHHHHCG-GGTTSCTTCTTCCEECCCBCTTCE
T ss_pred EEEEecCCCEEEEEEEECCc---c--cccccCceEEEcccchHHHHHHHHHhcCh-hhccCCCCCccceeccceeCCCcE
Confidence 467875 9999999999763 2 1111133443332210 00000 0000 0011 1123456777999999
Q ss_pred EEEEEEcC---CCeeEEEeecchhhhhccceEEEEEe
Q 040938 435 VAIRFLAD---NPGAWFMHCHLEVHTSWGLKMAWIVN 468 (487)
Q Consensus 435 ~~irf~~d---npG~w~~HCHi~~H~~~GM~~~~~V~ 468 (487)
..|.|.+. .+|.|-|-|- -|. ||-+.+.|.
T Consensus 93 ~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 93 DSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp EEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred EEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 99999997 8999999999 888 999999873
No 137
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=87.40 E-value=5.4 Score=32.40 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=51.4
Q ss_pred EEEEEEEecCCCceEEEEEc-Cce--EEEEEecCcccc--------eeEeeEEEeCCCceEEEEEEecCCCCCcceEEEe
Q 040938 136 TYLLRMINAALNDELFFSIA-NHT--LTVVETDAVYVK--------PIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAA 204 (487)
Q Consensus 136 ~~rlR~iN~~~~~~~~~~i~-~h~--~~via~DG~~v~--------P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~ 204 (487)
...|.+.|.+. ....|.+. |++ +.|...+|..|- .+......|.|||.+.+-+..++....|.|.+.+
T Consensus 21 ~~~ltv~N~s~-~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~a 99 (120)
T 3isy_A 21 KFNMSLKNQSE-RAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTYEVKV 99 (120)
T ss_dssp EEEEEEEECSS-SCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEEEEEEE
T ss_pred EEEEEEEcCCC-CcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCccEEEEE
Confidence 34688889986 45677776 555 555555576651 3456799999999999999999643349999988
Q ss_pred ccC
Q 040938 205 RPY 207 (487)
Q Consensus 205 ~~~ 207 (487)
...
T Consensus 100 ~l~ 102 (120)
T 3isy_A 100 TFK 102 (120)
T ss_dssp EEC
T ss_pred EEE
Confidence 753
No 138
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=85.71 E-value=0.72 Score=40.14 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=34.3
Q ss_pred cCCCCCeEEEEEEeCCCccceeecccc-cccc-ccceeeEEEeC
Q 040938 21 PIQTGQSYVYNFTVTGQRGTLFWHAHI-SWLR-ATLYGPIVILP 62 (487)
Q Consensus 21 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~~~-~Gl~G~liV~~ 62 (487)
-+.||+.-+..|+. +++|+|++.|.- .+.. ++|.|-++|++
T Consensus 126 da~PG~~n~~~~~~-~kpG~y~g~Cse~CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 126 EVLPGEVSTVRYTF-KRPGEYRIICNQYCGLGHQNMFGTIVVKE 168 (168)
T ss_dssp EECTTBCEEEEEEC-CSCEEEEEECCSCCSTTGGGCEEEEEEEC
T ss_pred EecCCceeEEEEEe-CCCEEEEEECCcCCCCCcCCCEEEEEEeC
Confidence 35699999999996 899999999983 5554 79999999974
No 139
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=84.12 E-value=3.4 Score=34.39 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=44.9
Q ss_pred eEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 128 KLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 128 ~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
.+.|+.|+.+||++-|.. -.+.|.+.+..+ .+.+.||+.-.+.++++++ |.|...+..
T Consensus 61 ~l~Vp~G~~V~~~vts~D--V~Hsf~ip~~~~----------------k~d~~PG~~~~~~~~~~~~---G~y~~~C~e 118 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPD--VIHGFHVEGTNI----------------NVEVLPGEVSTVRYTFKRP---GEYRIICNQ 118 (135)
T ss_dssp SEEEETTSEEEEEEEBSS--SCEEEEETTSSC----------------EEEECBTBCEEEEEECCSC---EEEEEECCS
T ss_pred EEEEcCCCEEEEEEEeCC--ccceEEecCCCc----------------eeEeCCCCcEEEEEEcCCC---EEEEEECcc
Confidence 699999999999988764 345666654432 2457889888899999887 999999864
No 140
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=64.22 E-value=15 Score=29.54 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=32.5
Q ss_pred EEEEEEEecCCCc-eEEEEEcCce-EEEEEecCcccceeEeeEEEeCCCceEEEEEEec
Q 040938 136 TYLLRMINAALND-ELFFSIANHT-LTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAK 192 (487)
Q Consensus 136 ~~rlR~iN~~~~~-~~~~~i~~h~-~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~ 192 (487)
.|+|||+|.+... .|.|++.|.. +.+++ +. .+.|.|||..++-|...
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g-------~~---~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWYG-------KQ---TIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEES-------CC---EEEECTTCEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEeC-------CC---cEEECCCCEEEEEEEEE
Confidence 7899999998554 5788887742 33322 11 39999999877766553
No 141
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=62.34 E-value=24 Score=31.46 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=51.7
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
-+.++.|+.|++.|.+.+ ..|.|-+=... =-+.+-||....+.|.++.
T Consensus 42 ~l~lP~g~~V~~~lTS~D----ViHSF~IP~lg----------------------------vK~daiPGr~n~l~~~~~~ 89 (205)
T 1cyx_A 42 EIAFPANTPVYFKVTSNS----VMHSFFIPRLG----------------------------SQIYAMAGMQTRLHLIANE 89 (205)
T ss_dssp EEEEETTSCEEEEEEESS----SCEEEEEGGGT----------------------------EEEEECTTCCEEEEECCSS
T ss_pred eEEEeCCCEEEEEEecCC----ceeeEEecccC----------------------------cEEEecCCceEEEEEEeCC
Confidence 578999999999999854 44544443221 1244557888889999999
Q ss_pred CeeEEEeecchhhhhc-cceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSW-GLKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~-GM~~~~~V~ 468 (487)
||.|...|-..-.... .|-..++|.
T Consensus 90 pG~y~g~CsE~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 90 PGTYDGICAEICGPGHSGMKFKAIAT 115 (205)
T ss_dssp SEEEEEEECSCCSTTSTTCCEEEEEE
T ss_pred CeEEEEEcccccccchhhceEEEEEE
Confidence 9999999987665544 455666665
No 142
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=49.89 E-value=51 Score=31.18 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=53.5
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+-+.++.|+.|++.+.+.+ ..|.|.+=... --+.+-||....+.|.++
T Consensus 189 N~lvlP~g~~V~~~ltS~D----ViHsf~iP~lg----------------------------~k~daiPG~~n~~~~~~~ 236 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTATD----VIHAWTIPAFA----------------------------VKQDAVPGRIAQLWFSVD 236 (298)
T ss_dssp SCEEEESSSEEEEEEEESS----SCEEEEEGGGT----------------------------EEEEECTTCCEEEEEECS
T ss_pred ceEEEEcCCEEEEEEEeCC----ccceeeEcccC----------------------------ceEEecCCceEEEEEEeC
Confidence 3578999999999999854 45665553221 124455777788999999
Q ss_pred CCeeEEEeecchhhh-hccceEEEEEeCC
Q 040938 443 NPGAWFMHCHLEVHT-SWGLKMAWIVNDG 470 (487)
Q Consensus 443 npG~w~~HCHi~~H~-~~GM~~~~~V~~~ 470 (487)
.||.|...|.-.--. ...|-..++|.+.
T Consensus 237 ~~G~y~g~CsE~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 237 QEGVYFGQCSELCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp SSEEEEECCCSCCSTTTTSCCEEEEEECH
T ss_pred CCEEEEEEcccccCcCccCCeeEEEEEcH
Confidence 999999999865443 3456666666543
No 143
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=45.97 E-value=71 Score=28.35 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=44.2
Q ss_pred eEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 128 KLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 128 ~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
.+.+..|+.+||+|-+.. -.+.|.|.+...++ ...||..-.+.+.++++ |.|+.++..+
T Consensus 42 ~l~lP~g~~V~~~lTS~D--ViHSF~IP~lgvK~----------------daiPGr~n~l~~~~~~p---G~y~g~CsE~ 100 (205)
T 1cyx_A 42 EIAFPANTPVYFKVTSNS--VMHSFFIPRLGSQI----------------YAMAGMQTRLHLIANEP---GTYDGICAEI 100 (205)
T ss_dssp EEEEETTSCEEEEEEESS--SCEEEEEGGGTEEE----------------EECTTCCEEEEECCSSS---EEEEEEECSC
T ss_pred eEEEeCCCEEEEEEecCC--ceeeEEecccCcEE----------------EecCCceEEEEEEeCCC---eEEEEEcccc
Confidence 589999999999998764 45677777655444 24467777777777877 9999999754
No 144
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=40.93 E-value=11 Score=30.86 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=18.7
Q ss_pred eEEEeCCCEEEEEEEecCCCceE
Q 040938 128 KLKVKPGKTYLLRMINAALNDEL 150 (487)
Q Consensus 128 ~~~v~~G~~~rlR~iN~~~~~~~ 150 (487)
.|+|++||++||.+.|-+..+.+
T Consensus 72 ~InV~~GETVrF~v~nkt~~W~F 94 (131)
T 2wtp_A 72 YVNVDSGETVAFRAGEKIVAWTF 94 (131)
T ss_dssp EEEEETTCEEEEEETTEEEEEEE
T ss_pred EEEecCCCEEEEEeCCcEEEEEE
Confidence 49999999999999998754433
No 145
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=38.28 E-value=94 Score=28.70 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=51.7
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+-+.++.|+.|++.+.+.+ ..|.|-+=.... -+.+-||....+.|.++
T Consensus 171 n~l~lP~g~~v~~~~tS~D----ViHsf~ip~l~~----------------------------k~da~PG~~n~~~~~~~ 218 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGAD----VIHSWTVPAFGV----------------------------KQDAVPGRLAQLWFRAE 218 (262)
T ss_dssp SCEEEETTSEEEEEEEESS----SCEEEEEGGGTE----------------------------EEEECBTCCEEEEEECC
T ss_pred ceEEEecCCEEEEEEEECc----ccceeeecccCc----------------------------eEEecCCceeEEEEecC
Confidence 3478999999999999854 456555433221 23345677778899999
Q ss_pred CCeeEEEeecchhhhh-ccceEEEEEeC
Q 040938 443 NPGAWFMHCHLEVHTS-WGLKMAWIVND 469 (487)
Q Consensus 443 npG~w~~HCHi~~H~~-~GM~~~~~V~~ 469 (487)
.||.+...|--.--.. ..|-..++|.+
T Consensus 219 ~~G~y~g~Cse~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 219 REGIFFGQCSELCGISHAYMPITVKVVS 246 (262)
T ss_dssp SCEEEEECCCSCCSTTGGGCCEEEEEEC
T ss_pred CcEEEEEEChHhcccCcccCeEEEEEEc
Confidence 9999999998655443 34555566543
No 146
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=37.54 E-value=90 Score=23.75 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=41.5
Q ss_pred EEeCCCEEEEEEEecCCCceEEEEEcC--ceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 130 KVKPGKTYLLRMINAALNDELFFSIAN--HTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 130 ~v~~G~~~rlR~iN~~~~~~~~~~i~~--h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
--+||+++++|++-...... . ..+ ..++|..-+|..+.-. .........++.-+.+...+..|.|.|++..
T Consensus 12 iYrPGetV~~~~~~~~~~~~-p--~~~~~~~v~l~dp~g~~v~~~---~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~ 84 (102)
T 2p9r_A 12 IYKPGQTVKFRVVSMDENFH-P--LNELIPLVYIQDPKGNRIAQW---QSFQLEGGLKQFSFPLSSEPFQGSYKVVVQK 84 (102)
T ss_dssp EECTTCEEEEEEEEECGGGC-B--CCCEEEEEEEECTTSCEEEEE---EEEECBTTEEEEEEECCSSCCCEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEECCCCc-C--CCCCceEEEEECCCCCEEEEE---EeecCCCCEEEEEEECCCCCCCeeEEEEEEE
Confidence 35799999999875432211 0 111 2455666666644221 1222334567777787766556999999864
No 147
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=34.20 E-value=43 Score=26.83 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=28.4
Q ss_pred EEEcCCCeeEEEeecchhhhhccceEEE-EEeCC
Q 040938 438 RFLADNPGAWFMHCHLEVHTSWGLKMAW-IVNDG 470 (487)
Q Consensus 438 rf~~dnpG~w~~HCHi~~H~~~GM~~~~-~V~~~ 470 (487)
.+..+.+|..-|=|=...|=..||...+ .|...
T Consensus 73 ~v~l~~~G~~yFic~~~~HC~~Gmkl~In~V~~~ 106 (116)
T 1x9u_A 73 KIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAG 106 (116)
T ss_dssp EEECCSCEEEEEECCSTTTTTTTCEEEEEEECC-
T ss_pred EEEECCCCCEEEECCCCCccccCCEEEEEEECCC
Confidence 4567899999999999999999999999 88655
No 148
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=31.38 E-value=28 Score=28.35 Aligned_cols=23 Identities=26% Similarity=0.636 Sum_probs=18.0
Q ss_pred CCCCCCcccccCCCCCeEEEEEEe
Q 040938 11 ADGPAYITQCPIQTGQSYVYNFTV 34 (487)
Q Consensus 11 ~DGv~~vtq~~I~PG~~~~Y~f~~ 34 (487)
.|+=.+ +.|||.+|+.++|.+..
T Consensus 70 ~daC~~-~~CPl~~G~~~~y~~~~ 92 (129)
T 1xwv_A 70 TNACHF-MKCPLVKGQQYDAKYTW 92 (129)
T ss_dssp CBGGGT-SCSSBCTTCEEEEEEEE
T ss_pred CCccCC-ccCcccCCEEEEEEEEe
Confidence 455434 58999999999999776
No 149
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=29.82 E-value=1.3e+02 Score=27.11 Aligned_cols=74 Identities=11% Similarity=0.307 Sum_probs=50.7
Q ss_pred eEEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcC
Q 040938 363 RAVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLAD 442 (487)
Q Consensus 363 ~~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~d 442 (487)
+.+.++.|+.|++.+.+.+ -.|.|.+=.... -+.+-||....+.|.++
T Consensus 140 n~lvlP~~~~Vr~~vtS~D----ViHsf~vP~lg~----------------------------K~DaiPGr~n~~~~~~~ 187 (227)
T 1v54_B 140 NRVVLPMEMTIRMLVSSED----VLHSWAVPSLGL----------------------------KTDAIPGRLNQTTLMSS 187 (227)
T ss_dssp SCEEEETTSCEEEEEEESS----SCEEEEEGGGTE----------------------------EEEECTTCCEEEEECCS
T ss_pred ceEEEecCCEEEEEEEeCc----ccceeeecccCc----------------------------EEEecCCceEEEEEecC
Confidence 4578999999999999854 456555432211 23345677778899999
Q ss_pred CCeeEEEeecchhhhhcc-ceEEEEEe
Q 040938 443 NPGAWFMHCHLEVHTSWG-LKMAWIVN 468 (487)
Q Consensus 443 npG~w~~HCHi~~H~~~G-M~~~~~V~ 468 (487)
.||.+...|.-.--.... |-..++|.
T Consensus 188 ~~G~y~g~Cse~CG~~Hs~M~~~v~vv 214 (227)
T 1v54_B 188 RPGLYYGQCSEICGSNHSFMPIVLELV 214 (227)
T ss_dssp SCEEEEECCCSCCSTTGGGCCEEEEEE
T ss_pred CcEEEEEEehhhcccccccCeEEEEEE
Confidence 999999999865554444 54555554
No 150
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=26.99 E-value=2.5e+02 Score=22.62 Aligned_cols=67 Identities=13% Similarity=0.035 Sum_probs=43.7
Q ss_pred EEeCCCEE--EEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 130 KVKPGKTY--LLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 130 ~v~~G~~~--rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
.+.+|+.+ +..+-|.|....-.+.+ .++ .||..+.-. .+.|++|+...|.+...... .|.|.|.+..
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V-----~ly-vng~~v~t~---~v~La~G~s~tv~f~~~~~~-~G~~~v~AvV 96 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKV-----RVY-INGTLYKNW---TVSLGPKEEKVLTFNWTPTQ-EGMYRINATV 96 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEE-----EEE-ETTEEEEEE---EEEECTTCEEEEEEEECCSS-CEEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEE-----EEE-ECCEEEeeE---EeccCCCCeEEEEEEEEcCC-CcEEEEEEEE
Confidence 66778755 56778988766443333 222 266655322 34699999999999876422 2889888764
No 151
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=26.46 E-value=39 Score=27.53 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCCCCCcccccCCCCCeEEEEEEeC
Q 040938 11 ADGPAYITQCPIQTGQSYVYNFTVT 35 (487)
Q Consensus 11 ~DGv~~vtq~~I~PG~~~~Y~f~~~ 35 (487)
.|+=..-+.|||.+|+.++|.+.++
T Consensus 71 ~daC~~g~~CPl~~G~~~~y~~~lp 95 (130)
T 1nep_A 71 SDGCKSGIRCPIEKDKTYNYVNKLP 95 (130)
T ss_dssp CBGGGTTCCSSBCTTCEEEEEEEEE
T ss_pred CCcccCCCcCcccCCcEEEEEEEeE
Confidence 4554222479999999999998874
No 152
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=25.38 E-value=1.7e+02 Score=26.84 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=43.9
Q ss_pred eEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEeccC
Q 040938 128 KLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARPY 207 (487)
Q Consensus 128 ~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~~ 207 (487)
++.+..|+.+||++-+.. -.+.|.|.+...++- .-||..-.+.+.++++ |.|+.++..+
T Consensus 172 ~l~lP~g~~v~~~~tS~D--ViHsf~ip~l~~k~d----------------a~PG~~n~~~~~~~~~---G~y~g~Cse~ 230 (262)
T 2gsm_B 172 AMVVPVNKTVVVQVTGAD--VIHSWTVPAFGVKQD----------------AVPGRLAQLWFRAERE---GIFFGQCSEL 230 (262)
T ss_dssp CEEEETTSEEEEEEEESS--SCEEEEEGGGTEEEE----------------ECBTCCEEEEEECCSC---EEEEECCCSC
T ss_pred eEEEecCCEEEEEEEECc--ccceeeecccCceEE----------------ecCCceeEEEEecCCc---EEEEEEChHh
Confidence 689999999999997654 467778876654442 3467667777788877 9999998753
No 153
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=25.08 E-value=33 Score=28.05 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=14.4
Q ss_pred CCCCCcccccCCCCCeEEEEE
Q 040938 12 DGPAYITQCPIQTGQSYVYNF 32 (487)
Q Consensus 12 DGv~~vtq~~I~PG~~~~Y~f 32 (487)
+||-|- |.-|.||++|.|.=
T Consensus 67 ~GVVG~-qP~L~PGe~f~YtS 86 (127)
T 2f1e_A 67 EGVVGE-QPWLRPGEAFHYTS 86 (127)
T ss_dssp SSBTTB-CCEECTTCEEEEEE
T ss_pred CCeecC-CCcCCCCCceEEeC
Confidence 677663 56689999877753
No 154
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=25.00 E-value=92 Score=25.70 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=29.1
Q ss_pred EEc-CCCeeEEEeecchhhhhccceEEEEEeCCC
Q 040938 439 FLA-DNPGAWFMHCHLEVHTSWGLKMAWIVNDGK 471 (487)
Q Consensus 439 f~~-dnpG~w~~HCHi~~H~~~GM~~~~~V~~~~ 471 (487)
|.. +.+|.+-|=|=+..|=..||...+.|....
T Consensus 77 v~L~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~ 110 (138)
T 1jer_A 77 IERLDELGMHYFVCTVGTHCSNGQKLSINVVAAN 110 (138)
T ss_dssp EEECCSSEEEEEECCSTTTGGGTCEEEEEEECCC
T ss_pred EEeccCCcCEEEEcCCCCccccCCEEEEEEcCCC
Confidence 455 889999999999999999999999998654
No 155
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=24.70 E-value=80 Score=30.07 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=49.8
Q ss_pred EEEecCCCEEEEEEeeCCCCCCCCCCeeecCCceEEEEecCCCCCCCCCCCCCCCCCCCccceEEecCCcEEEEEEEcCC
Q 040938 364 AVALPFNASVEVVMQDTSIIGAESHPLHLHGFNFFVVGQGFGNFDPSKDPAKFNLVDPAERNTVGVPSGGWVAIRFLADN 443 (487)
Q Consensus 364 ~~~v~~g~~v~~~l~n~~~~~~~~HP~HlHg~~f~Vl~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~irf~~dn 443 (487)
-+.++.|+.|++.+.+.+ ..|.|.+=... =-+.+-||-...+.|.++.
T Consensus 152 ~l~lP~g~~V~~~lTS~D----ViHsf~IP~lg----------------------------~k~DaiPGr~n~~~~~~~~ 199 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNS----VMNSFFIPRLG----------------------------SQIYAMAGMQTRLHLIANE 199 (315)
T ss_dssp BCCCCSSSEEEEEECBSS----SCEEEEEGGGT----------------------------EEEEECBTSCEEEEEECCS
T ss_pred eEEEeCCCEEEEEEEeCC----ccceeeecccC----------------------------cEEeecCCcceeeEEecCC
Confidence 456888999999998753 45655443221 1234456777889999999
Q ss_pred CeeEEEeecchhhhhcc-ceEEEEEe
Q 040938 444 PGAWFMHCHLEVHTSWG-LKMAWIVN 468 (487)
Q Consensus 444 pG~w~~HCHi~~H~~~G-M~~~~~V~ 468 (487)
||.|...|--.--.... |-..++|.
T Consensus 200 ~G~y~g~CsE~CG~~Hs~M~~~v~vv 225 (315)
T 1fft_B 200 PGTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_dssp CBCCEEBCCSCCSTTTTTCCEECCBC
T ss_pred CeEEEEeccccchhhHHhccceEEEe
Confidence 99999999866555444 44555554
No 156
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=24.03 E-value=33 Score=28.52 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=14.5
Q ss_pred CCCCCcccccCCCCCeEEEEE
Q 040938 12 DGPAYITQCPIQTGQSYVYNF 32 (487)
Q Consensus 12 DGv~~vtq~~I~PG~~~~Y~f 32 (487)
+||-|- |.-|.||++|.|.=
T Consensus 71 ~GVVGe-qPvL~PGe~F~YtS 90 (139)
T 1xq4_A 71 LGVVGQ-QPLLAPGETFEYTS 90 (139)
T ss_dssp ESSSSC-CCEECTTCEEEEEE
T ss_pred CCeecC-CCcCCCCCceEEcC
Confidence 677663 56689999877754
No 157
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=22.87 E-value=65 Score=25.97 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=29.2
Q ss_pred CCCCCCC---cccccCCCCCeEEEEEEeCC--Cccceeecccccccc
Q 040938 10 WADGPAY---ITQCPIQTGQSYVYNFTVTG--QRGTLFWHAHISWLR 51 (487)
Q Consensus 10 ~~DGv~~---vtq~~I~PG~~~~Y~f~~~~--~~Gt~wYH~H~~~~~ 51 (487)
|+||-.+ +.+.-|+||++.+|++..++ .+|+|..+.=.-++.
T Consensus 59 wS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG~Ytl~a~l~~~~ 105 (120)
T 3isy_A 59 YSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPGTYEVKVTFKGRA 105 (120)
T ss_dssp TTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSEEEEEEEEECCEE
T ss_pred ccccchhhhhhceEEECCCCEEEEEEEeCCCCCCccEEEEEEEEeee
Confidence 4555432 22445899999999999963 489998877655443
No 158
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=22.72 E-value=33 Score=27.96 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=14.4
Q ss_pred CCCCCcccccCCCCCeEEEEE
Q 040938 12 DGPAYITQCPIQTGQSYVYNF 32 (487)
Q Consensus 12 DGv~~vtq~~I~PG~~~~Y~f 32 (487)
+||-|- |.-|.||++|.|.=
T Consensus 66 ~GVVG~-qP~L~PGe~f~YtS 85 (126)
T 1xvs_A 66 DGVVGE-QPRIKANDEYTYSS 85 (126)
T ss_dssp ESBTTB-CCEECTTCEEEEEE
T ss_pred CceEcC-CCcCCCCCceEEeC
Confidence 677663 56689999877753
No 159
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=22.67 E-value=93 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=28.4
Q ss_pred EEEcCCCeeEEEeecchhhhhccceEEEEEeCC
Q 040938 438 RFLADNPGAWFMHCHLEVHTSWGLKMAWIVNDG 470 (487)
Q Consensus 438 rf~~dnpG~w~~HCHi~~H~~~GM~~~~~V~~~ 470 (487)
.|..+.+|..-|=|=...|=..||-..+.|...
T Consensus 73 ~v~L~~~G~~yFic~~~gHC~~GmKl~I~V~~~ 105 (109)
T 1ws8_A 73 SIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPG 105 (109)
T ss_dssp EEECCSSEEEEEECCSTTTTTTTCEEEEEECC-
T ss_pred EEEECCCcCEEEECCCCCcccCCCEEEEEEcCC
Confidence 466789999999999999999999999998643
No 160
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=22.51 E-value=2.6e+02 Score=26.28 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=45.1
Q ss_pred eeEEEeCCCEEEEEEEecCCCceEEEEEcCceEEEEEecCcccceeEeeEEEeCCCceEEEEEEecCCCCCcceEEEecc
Q 040938 127 FKLKVKPGKTYLLRMINAALNDELFFSIANHTLTVVETDAVYVKPIKTKVVLITPGQTTNVLLKAKHKSPNASFLIAARP 206 (487)
Q Consensus 127 ~~~~v~~G~~~rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~l~pG~R~dv~v~~~~~~~~g~~~i~~~~ 206 (487)
-++.+..|+.+||++-+.. -.+.|.|.....++- .-||..-.+.+.++++ |.|+.++..
T Consensus 189 N~lvlP~g~~V~~~ltS~D--ViHsf~iP~lg~k~d----------------aiPG~~n~~~~~~~~~---G~y~g~CsE 247 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTATD--VIHAWTIPAFAVKQD----------------AVPGRIAQLWFSVDQE---GVYFGQCSE 247 (298)
T ss_dssp SCEEEESSSEEEEEEEESS--SCEEEEEGGGTEEEE----------------ECTTCCEEEEEECSSS---EEEEECCCS
T ss_pred ceEEEEcCCEEEEEEEeCC--ccceeeEcccCceEE----------------ecCCceEEEEEEeCCC---EEEEEEccc
Confidence 3688999999999988754 456777876655442 4577777788888887 999999875
Q ss_pred C
Q 040938 207 Y 207 (487)
Q Consensus 207 ~ 207 (487)
+
T Consensus 248 ~ 248 (298)
T 3hb3_B 248 L 248 (298)
T ss_dssp C
T ss_pred c
Confidence 3
No 161
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Probab=21.29 E-value=1.9e+02 Score=25.80 Aligned_cols=30 Identities=7% Similarity=-0.026 Sum_probs=22.6
Q ss_pred EEEEEecCCCceEEEEEcCceEEEEEecCccc
Q 040938 138 LLRMINAALNDELFFSIANHTLTVVETDAVYV 169 (487)
Q Consensus 138 rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v 169 (487)
++++.|+|..+.+.++ +.++..+..|+.++
T Consensus 109 ~l~~~~aG~~~~~l~r--~g~~~~l~~~~~~l 138 (242)
T 3pu9_A 109 SVLVTRNSEVPMLLGR--NGEFEQISESGGRI 138 (242)
T ss_dssp EEEEEEESCCCEEEEE--TTEEEEECCCCCCB
T ss_pred EEEEEeCCCCcEEEEE--CCEEEEeCCCCccc
Confidence 6889999987776554 45777888887766
No 162
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=20.97 E-value=1.8e+02 Score=26.44 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=10.9
Q ss_pred eEEEeCCCceEEE
Q 040938 175 KVVLITPGQTTNV 187 (487)
Q Consensus 175 ~~l~l~pG~R~dv 187 (487)
..|.|.|||.+.+
T Consensus 172 ~~i~L~PGESiTl 184 (246)
T 3kmh_A 172 SQLRLSPGESICL 184 (246)
T ss_dssp CEEEECTTCEEEE
T ss_pred CEEEECCCCeEec
Confidence 6788999998876
No 163
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=20.75 E-value=32 Score=28.42 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=14.4
Q ss_pred CCCCCcccccCCCCCeEEEEE
Q 040938 12 DGPAYITQCPIQTGQSYVYNF 32 (487)
Q Consensus 12 DGv~~vtq~~I~PG~~~~Y~f 32 (487)
+||-|- |.-|.||++|.|.=
T Consensus 66 ~GVVGe-qP~L~PGe~F~YtS 85 (134)
T 1tza_A 66 AGVVGE-TPTIPPNTAYQYTS 85 (134)
T ss_dssp ESBTTB-CCEECTTEEEEEEE
T ss_pred CceEcC-CCcCCCCCceEEcC
Confidence 677663 56689999777754
No 164
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*
Probab=20.44 E-value=1.6e+02 Score=26.10 Aligned_cols=30 Identities=3% Similarity=0.117 Sum_probs=19.5
Q ss_pred EEEEEecCCCceEEEEEcCceEEEEEecCccc
Q 040938 138 LLRMINAALNDELFFSIANHTLTVVETDAVYV 169 (487)
Q Consensus 138 rlR~iN~~~~~~~~~~i~~h~~~via~DG~~v 169 (487)
+++++|+|..+.+.++ +.++..+..++.++
T Consensus 106 ~l~~~~aG~~~~~l~r--~g~~~~l~~~~~~l 135 (242)
T 3t91_A 106 SCKFLKVGSTPSFIKR--GDQVMKVQASNLPI 135 (242)
T ss_dssp EEEEEEESCCCEEEEE--TTEEEECCCC----
T ss_pred EEEEEcCCCCceEEEE--CCEEEEecCCCcee
Confidence 6999999988877554 44666666666554
Done!