BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040943
         (950 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
           Tarantula Muscle Thick Filament Cryo-Em 3d-Map
          Length = 973

 Score = 30.4 bits (67), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 190 KEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC 249
           KEQ   L          F  C      +R+  LDA   L+     Q R +G L+  +++C
Sbjct: 663 KEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLE-----QLRCNGVLEG-IRIC 716

Query: 250 NQALSHEESRRKYLEVQVSEFRTHYDNTFAE-----YQDAKSQLECLTNQRDKEIAALRH 304
            Q   +         +   EFR  Y+   A      + D K    C+   +  E+    +
Sbjct: 717 RQGFPNR--------IVFQEFRQRYEILAANAIPKGFMDGKQ--ACILMIKALELDPNLY 766

Query: 305 SLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQM 364
            +G  + F++        LE E    +  +    +AQ +   +  + AK + +L +++ +
Sbjct: 767 RIGQSKIFFRTG--VLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVI 824

Query: 365 HRDCSANLRAKEAEW 379
            R+C+A L+ +  +W
Sbjct: 825 QRNCAAYLKLRNWQW 839


>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
           Tarantula Muscle Thick Filament Cryo-Em 3d-Map
          Length = 971

 Score = 30.4 bits (67), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 190 KEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC 249
           KEQ   L          F  C      +R+  LDA   L+     Q R +G L+  +++C
Sbjct: 663 KEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLE-----QLRCNGVLEG-IRIC 716

Query: 250 NQALSHEESRRKYLEVQVSEFRTHYDNTFAE-----YQDAKSQLECLTNQRDKEIAALRH 304
            Q   +         +   EFR  Y+   A      + D K    C+   +  E+    +
Sbjct: 717 RQGFPNR--------IVFQEFRQRYEILAANAIPKGFMDGKQ--ACILMIKALELDPNLY 766

Query: 305 SLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQM 364
            +G  + F++        LE E    +  +    +AQ +   +  + AK + +L +++ +
Sbjct: 767 RIGQSKIFFRTG--VLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVI 824

Query: 365 HRDCSANLRAKEAEW 379
            R+C+A L+ +  +W
Sbjct: 825 QRNCAAYLKLRNWQW 839


>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
           Smooth Muscle Myosin With Regulatory Light Chain In
           Phosphorylated State
 pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
           Smooth Muscle Myosin With Regulatory Light Chain In
           Phosphorylated State
          Length = 909

 Score = 30.0 bits (66), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 23/195 (11%)

Query: 190 KEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC 249
           KEQ   L          F  C      +R+  LDA   L+     Q R +G L+  +++C
Sbjct: 663 KEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLE-----QLRCNGVLEG-IRIC 716

Query: 250 NQALSHEESRRKYLEVQVSEFRTHYDNTFAE-----YQDAKSQLECLTNQRDKEIAALRH 304
            Q   +         +   EFR  Y+   A      + D K    C+   +  E+    +
Sbjct: 717 RQGFPNR--------IVFQEFRQRYEILAANAIPKGFMDGKQ--ACILMIKALELDPNLY 766

Query: 305 SLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQM 364
            +G  + F++        LE E    +  +    +AQ +   +  + AK + +L +++ +
Sbjct: 767 RIGQSKIFFRTG--VLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAMKVI 824

Query: 365 HRDCSANLRAKEAEW 379
            R+C+A L+ +  +W
Sbjct: 825 QRNCAAYLKLRNWQW 839


>pdb|2BDD|A Chain A, Crystal Structure Of Holo-Acp-Synthase From Plasmodium
          Yoelii
          Length = 182

 Score = 29.6 bits (65), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 51 EKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLG 89
          E Q ++LNEK  + +E+K+L   + +    KE+I+K +G
Sbjct: 61 ETQKKKLNEKINKSNELKKLAIYVSKKFAAKEAILKSMG 99


>pdb|2QG8|A Chain A, Plasmodium Yoelii Acyl Carrier Protein Synthase Py06285
          With Adp Bound
          Length = 163

 Score = 29.3 bits (64), Expect = 10.0,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 51 EKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLG 89
          E Q ++LNEK  + +E+K+L   + +    KE+I+K +G
Sbjct: 42 ETQKKKLNEKINKSNELKKLAIYVSKKFAAKEAILKSMG 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.125    0.325 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,959,049
Number of Sequences: 62578
Number of extensions: 787741
Number of successful extensions: 3069
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2776
Number of HSP's gapped (non-prelim): 288
length of query: 950
length of database: 14,973,337
effective HSP length: 108
effective length of query: 842
effective length of database: 8,214,913
effective search space: 6916956746
effective search space used: 6916956746
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)