Query 040943
Match_columns 950
No_of_seqs 31 out of 33
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 13:21:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 99.6 1.9E-07 4E-12 119.2 91.2 543 62-639 936-1511(1930)
2 TIGR00606 rad50 rad50. This fa 99.4 4.3E-06 9.4E-11 104.9 86.6 625 196-887 392-1086(1311)
3 TIGR00606 rad50 rad50. This fa 99.0 0.0004 8.7E-09 87.7 85.8 97 308-405 529-629 (1311)
4 PF10174 Cast: RIM-binding pro 98.9 0.00047 1E-08 83.4 69.2 276 104-464 124-409 (775)
5 KOG4674 Uncharacterized conser 98.9 0.00098 2.1E-08 85.7 92.9 213 168-417 222-434 (1822)
6 PF10174 Cast: RIM-binding pro 98.8 0.0016 3.5E-08 78.9 60.4 290 112-417 228-529 (775)
7 PRK02224 chromosome segregatio 98.8 0.0016 3.5E-08 78.5 63.9 31 384-414 519-549 (880)
8 KOG4674 Uncharacterized conser 98.8 0.003 6.4E-08 81.5 86.6 685 3-768 388-1230(1822)
9 PRK02224 chromosome segregatio 98.7 0.0029 6.3E-08 76.3 67.6 119 279-408 244-362 (880)
10 KOG0161 Myosin class II heavy 98.5 0.014 3E-07 76.5 99.3 206 16-235 932-1144(1930)
11 PF12128 DUF3584: Protein of u 98.3 0.035 7.5E-07 70.4 61.5 186 721-908 725-927 (1201)
12 TIGR02169 SMC_prok_A chromosom 98.2 0.036 7.9E-07 67.8 76.1 16 280-295 556-571 (1164)
13 TIGR02169 SMC_prok_A chromosom 98.2 0.038 8.3E-07 67.6 77.7 17 892-908 1017-1033(1164)
14 PRK03918 chromosome segregatio 98.1 0.056 1.2E-06 65.3 60.8 47 126-172 311-357 (880)
15 PRK03918 chromosome segregatio 98.0 0.078 1.7E-06 64.0 65.1 27 50-76 202-228 (880)
16 PF00038 Filament: Intermediat 98.0 0.021 4.5E-07 61.2 31.1 67 452-521 242-308 (312)
17 PF01576 Myosin_tail_1: Myosin 98.0 1.6E-06 3.5E-11 104.9 0.0 108 206-331 142-249 (859)
18 COG1196 Smc Chromosome segrega 97.6 0.5 1.1E-05 60.1 80.3 43 838-880 988-1031(1163)
19 TIGR02168 SMC_prok_B chromosom 97.4 0.57 1.2E-05 57.3 84.3 48 543-590 790-837 (1179)
20 PF00038 Filament: Intermediat 97.4 0.31 6.8E-06 52.3 31.1 86 42-145 55-140 (312)
21 PF01576 Myosin_tail_1: Myosin 97.0 0.00012 2.5E-09 89.2 -0.8 229 264-526 298-541 (859)
22 PF07888 CALCOCO1: Calcium bin 96.9 1.6 3.4E-05 52.2 34.1 288 7-339 165-452 (546)
23 COG1196 Smc Chromosome segrega 96.9 2.5 5.5E-05 54.0 82.2 168 213-381 380-570 (1163)
24 PRK01156 chromosome segregatio 96.9 2 4.4E-05 52.8 57.5 69 471-539 642-710 (895)
25 PF12128 DUF3584: Protein of u 96.9 2.7 5.7E-05 54.1 75.2 121 193-318 415-547 (1201)
26 KOG4643 Uncharacterized coiled 96.8 2.7 5.8E-05 53.1 45.3 266 4-412 175-446 (1195)
27 PF05557 MAD: Mitotic checkpoi 96.8 0.0047 1E-07 73.9 9.4 197 178-381 108-326 (722)
28 PRK04778 septation ring format 96.6 2.3 4.9E-05 50.5 43.0 385 5-478 104-527 (569)
29 PHA02562 46 endonuclease subun 96.4 1.2 2.6E-05 51.4 25.5 218 36-291 169-391 (562)
30 PRK04863 mukB cell division pr 96.4 6.2 0.00013 52.2 70.9 75 807-881 1065-1142(1486)
31 PHA02562 46 endonuclease subun 96.2 0.78 1.7E-05 52.8 22.6 104 170-273 174-277 (562)
32 TIGR02168 SMC_prok_B chromosom 96.0 6.3 0.00014 48.6 86.9 11 792-802 969-979 (1179)
33 PF14662 CCDC155: Coiled-coil 95.8 1.5 3.2E-05 46.4 19.9 180 74-327 6-188 (193)
34 PF08317 Spc7: Spc7 kinetochor 95.7 0.47 1E-05 52.4 17.2 143 209-366 134-293 (325)
35 PF00261 Tropomyosin: Tropomyo 95.7 3.7 7.9E-05 43.6 23.4 137 2-156 4-147 (237)
36 PF05701 WEMBL: Weak chloropla 95.6 7.1 0.00015 46.2 48.9 292 74-423 118-416 (522)
37 PF07888 CALCOCO1: Calcium bin 95.5 8.3 0.00018 46.3 37.1 96 239-335 138-237 (546)
38 KOG0250 DNA repair protein RAD 95.2 14 0.0003 47.4 54.7 171 117-294 209-409 (1074)
39 PF09726 Macoilin: Transmembra 94.9 2.8 6.1E-05 51.4 21.5 101 173-308 548-654 (697)
40 PF05622 HOOK: HOOK protein; 94.3 0.032 6.8E-07 67.1 3.4 151 123-280 240-406 (713)
41 PF05483 SCP-1: Synaptonemal c 94.3 19 0.0004 44.5 75.0 511 20-639 99-642 (786)
42 smart00787 Spc7 Spc7 kinetocho 94.0 10 0.00022 42.6 21.7 153 209-365 129-287 (312)
43 KOG0978 E3 ubiquitin ligase in 94.0 21 0.00046 44.2 44.8 286 105-421 262-585 (698)
44 PF09726 Macoilin: Transmembra 93.9 21 0.00045 44.2 25.7 188 277-491 465-655 (697)
45 PF05557 MAD: Mitotic checkpoi 93.9 0.13 2.8E-06 62.0 7.4 283 1-339 300-587 (722)
46 KOG0995 Centromere-associated 93.8 20 0.00044 43.4 37.4 132 744-888 423-554 (581)
47 PF00261 Tropomyosin: Tropomyo 93.8 11 0.00024 40.1 24.8 215 181-414 5-230 (237)
48 PRK10869 recombination and rep 93.1 18 0.00039 43.2 22.9 59 249-307 132-195 (553)
49 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.9 5.2 0.00011 39.1 15.4 127 6-139 3-129 (132)
50 TIGR00634 recN DNA repair prot 92.8 19 0.00041 42.8 22.5 101 249-375 136-238 (563)
51 KOG0996 Structural maintenance 92.1 49 0.0011 43.2 61.3 32 238-269 268-299 (1293)
52 COG0419 SbcC ATPase involved i 92.1 41 0.00089 42.3 68.5 20 4-23 176-195 (908)
53 PF06160 EzrA: Septation ring 91.6 36 0.00079 40.8 46.3 276 95-436 54-333 (560)
54 KOG0250 DNA repair protein RAD 91.5 55 0.0012 42.4 26.9 121 110-242 339-462 (1074)
55 PF15070 GOLGA2L5: Putative go 91.4 42 0.00092 41.1 25.7 248 79-340 11-291 (617)
56 KOG0976 Rho/Rac1-interacting s 91.4 50 0.0011 41.8 50.4 263 32-367 132-411 (1265)
57 PF09730 BicD: Microtubule-ass 91.2 49 0.0011 41.4 36.3 162 240-412 256-429 (717)
58 PF15619 Lebercilin: Ciliary p 91.1 23 0.00049 37.4 18.6 112 114-255 46-157 (194)
59 COG0419 SbcC ATPase involved i 91.0 52 0.0011 41.4 69.3 50 69-118 144-195 (908)
60 KOG0971 Microtubule-associated 90.9 58 0.0013 41.7 36.3 223 500-762 322-559 (1243)
61 KOG0933 Structural maintenance 90.8 61 0.0013 41.9 59.1 211 123-337 245-467 (1174)
62 PF05769 DUF837: Protein of un 89.9 28 0.0006 36.5 18.5 33 318-360 70-102 (181)
63 KOG0977 Nuclear envelope prote 89.5 58 0.0012 39.6 31.7 193 76-332 36-229 (546)
64 KOG4643 Uncharacterized coiled 89.0 84 0.0018 40.7 52.6 224 219-513 180-411 (1195)
65 PRK01156 chromosome segregatio 88.5 75 0.0016 39.6 64.3 23 566-588 677-699 (895)
66 PF05622 HOOK: HOOK protein; 88.5 0.14 3E-06 61.8 0.0 30 386-415 620-649 (713)
67 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.4 9.5 0.00021 37.3 12.5 118 108-239 3-124 (132)
68 PF09730 BicD: Microtubule-ass 88.3 79 0.0017 39.6 35.1 91 163-272 91-184 (717)
69 PRK09039 hypothetical protein; 87.9 34 0.00074 38.8 18.1 78 269-358 120-199 (343)
70 COG1579 Zn-ribbon protein, pos 86.9 53 0.0011 36.1 18.6 84 219-304 13-96 (239)
71 COG1579 Zn-ribbon protein, pos 86.7 29 0.00063 38.0 16.0 84 5-88 30-115 (239)
72 PF15290 Syntaphilin: Golgi-lo 86.1 7.9 0.00017 43.3 11.5 96 128-257 81-179 (305)
73 PF04849 HAP1_N: HAP1 N-termin 85.8 55 0.0012 37.2 17.9 170 122-292 97-303 (306)
74 PF10212 TTKRSYEDQ: Predicted 85.4 28 0.0006 41.9 16.2 179 299-492 318-514 (518)
75 PF05701 WEMBL: Weak chloropla 84.1 1E+02 0.0022 36.8 45.6 56 185-247 17-79 (522)
76 PRK09039 hypothetical protein; 83.7 60 0.0013 36.9 17.3 88 792-879 113-204 (343)
77 KOG0971 Microtubule-associated 83.6 1.5E+02 0.0032 38.4 39.2 208 317-551 367-604 (1243)
78 KOG0962 DNA repair protein RAD 83.0 1.8E+02 0.0039 38.8 76.9 165 110-285 180-355 (1294)
79 KOG0977 Nuclear envelope prote 81.7 1.4E+02 0.0029 36.6 29.0 283 84-399 57-388 (546)
80 PF05010 TACC: Transforming ac 80.9 86 0.0019 33.8 23.6 135 708-874 60-194 (207)
81 PF06705 SF-assemblin: SF-asse 79.9 91 0.002 33.4 22.7 132 104-239 8-144 (247)
82 PF08317 Spc7: Spc7 kinetochor 79.6 1.1E+02 0.0024 34.3 17.7 115 741-858 172-286 (325)
83 PF10186 Atg14: UV radiation r 79.5 88 0.0019 33.1 16.0 18 891-908 193-210 (302)
84 PF15450 DUF4631: Domain of un 78.5 1.7E+02 0.0036 35.7 33.5 245 95-400 154-413 (531)
85 PF06160 EzrA: Septation ring 78.5 1.6E+02 0.0035 35.5 42.6 124 5-151 100-223 (560)
86 PF10473 CENP-F_leu_zip: Leuci 77.8 16 0.00036 37.0 9.4 95 796-890 4-101 (140)
87 PF04849 HAP1_N: HAP1 N-termin 77.4 1.4E+02 0.003 34.1 20.2 125 351-485 162-303 (306)
88 PF13851 GAS: Growth-arrest sp 74.3 30 0.00065 36.5 10.7 98 789-886 28-138 (201)
89 PRK11637 AmiB activator; Provi 73.4 1.8E+02 0.0039 33.5 24.4 51 276-326 198-248 (428)
90 KOG1103 Predicted coiled-coil 72.6 2E+02 0.0043 33.7 22.0 86 127-212 91-181 (561)
91 PF08614 ATG16: Autophagy prot 72.3 12 0.00026 38.6 7.2 73 44-116 105-180 (194)
92 TIGR03185 DNA_S_dndD DNA sulfu 71.0 2.5E+02 0.0055 34.2 33.6 74 39-119 207-280 (650)
93 PF05667 DUF812: Protein of un 70.5 2.7E+02 0.0059 34.3 27.5 237 253-516 316-591 (594)
94 KOG2129 Uncharacterized conser 70.1 72 0.0016 37.9 13.1 80 99-187 206-302 (552)
95 PRK11637 AmiB activator; Provi 66.6 2.5E+02 0.0054 32.5 24.5 81 5-85 46-126 (428)
96 PF12325 TMF_TATA_bd: TATA ele 66.2 74 0.0016 31.6 10.7 82 293-413 26-107 (120)
97 PF13851 GAS: Growth-arrest sp 65.9 1.9E+02 0.004 30.8 20.0 181 28-241 10-200 (201)
98 KOG2991 Splicing regulator [RN 64.2 2.6E+02 0.0056 31.8 16.7 51 274-324 138-194 (330)
99 TIGR03185 DNA_S_dndD DNA sulfu 63.7 3.5E+02 0.0075 33.1 33.4 103 259-361 210-312 (650)
100 PF13870 DUF4201: Domain of un 63.5 1.8E+02 0.0038 29.7 18.9 69 267-339 65-133 (177)
101 PF12718 Tropomyosin_1: Tropom 62.9 1.7E+02 0.0038 29.5 12.8 113 172-285 30-142 (143)
102 PF10498 IFT57: Intra-flagella 62.2 2.3E+02 0.005 32.8 15.2 118 458-587 227-345 (359)
103 PF05911 DUF869: Plant protein 61.1 4.5E+02 0.0098 33.6 23.3 199 112-325 503-715 (769)
104 PF10473 CENP-F_leu_zip: Leuci 60.3 2.1E+02 0.0045 29.4 14.8 26 353-378 91-116 (140)
105 PF02183 HALZ: Homeobox associ 58.8 15 0.00032 30.8 3.8 45 261-309 1-45 (45)
106 PF15619 Lebercilin: Ciliary p 57.7 2.6E+02 0.0057 29.7 18.7 167 294-496 9-188 (194)
107 PF05667 DUF812: Protein of un 57.6 4.6E+02 0.0099 32.5 24.9 71 172-248 507-589 (594)
108 PF04012 PspA_IM30: PspA/IM30 57.4 2.5E+02 0.0054 29.4 16.9 139 95-287 10-148 (221)
109 PF09787 Golgin_A5: Golgin sub 56.4 4.2E+02 0.0091 31.7 27.1 42 727-768 336-377 (511)
110 PF10186 Atg14: UV radiation r 56.0 2.8E+02 0.006 29.5 14.2 70 74-143 18-91 (302)
111 PF09728 Taxilin: Myosin-like 54.9 3.6E+02 0.0078 30.5 27.9 84 171-265 203-286 (309)
112 PRK10884 SH3 domain-containing 54.7 45 0.00097 35.6 7.6 75 788-883 93-167 (206)
113 PF08826 DMPK_coil: DMPK coile 54.4 66 0.0014 28.8 7.3 52 16-67 4-58 (61)
114 PF09787 Golgin_A5: Golgin sub 53.6 4.6E+02 0.01 31.4 23.8 207 180-413 158-380 (511)
115 KOG0980 Actin-binding protein 53.5 6.4E+02 0.014 32.9 25.8 223 2-268 336-562 (980)
116 smart00787 Spc7 Spc7 kinetocho 53.0 3.5E+02 0.0076 30.7 14.5 117 27-150 140-260 (312)
117 PF12718 Tropomyosin_1: Tropom 52.5 2.7E+02 0.0057 28.2 14.4 106 31-161 4-112 (143)
118 cd09234 V_HD-PTP_like Protein- 51.9 3.2E+02 0.007 30.8 14.0 132 3-147 195-329 (337)
119 KOG0612 Rho-associated, coiled 51.7 7.7E+02 0.017 33.3 53.3 92 3-98 465-558 (1317)
120 PF15070 GOLGA2L5: Putative go 49.6 6.1E+02 0.013 31.6 31.1 62 193-254 6-67 (617)
121 PF11932 DUF3450: Protein of u 49.5 3.3E+02 0.0072 29.3 13.2 43 867-915 125-169 (251)
122 PF09755 DUF2046: Uncharacteri 49.4 4.7E+02 0.01 30.2 25.8 223 498-798 29-267 (310)
123 PF04156 IncA: IncA protein; 49.1 3E+02 0.0065 28.0 12.2 25 260-284 125-149 (191)
124 KOG1029 Endocytic adaptor prot 49.0 7.2E+02 0.016 32.3 26.7 113 274-397 460-572 (1118)
125 PRK04778 septation ring format 48.5 5.7E+02 0.012 31.0 48.9 274 95-431 58-332 (569)
126 smart00502 BBC B-Box C-termina 47.6 1.9E+02 0.0042 26.4 9.7 60 93-152 42-102 (127)
127 KOG0963 Transcription factor/C 47.1 6.8E+02 0.015 31.4 27.7 299 97-417 110-436 (629)
128 KOG0804 Cytoplasmic Zn-finger 46.9 3.7E+02 0.008 32.6 13.7 42 369-413 405-446 (493)
129 PF05911 DUF869: Plant protein 46.7 7.5E+02 0.016 31.8 49.8 163 192-361 46-226 (769)
130 PF08614 ATG16: Autophagy prot 46.2 1.2E+02 0.0025 31.6 8.9 75 784-869 112-186 (194)
131 cd00632 Prefoldin_beta Prefold 45.6 2.3E+02 0.0049 26.8 9.9 102 274-413 1-102 (105)
132 PF09789 DUF2353: Uncharacteri 45.4 5.4E+02 0.012 29.7 16.4 163 53-255 14-179 (319)
133 PF09789 DUF2353: Uncharacteri 45.1 5.4E+02 0.012 29.7 17.9 99 108-235 126-229 (319)
134 COG2433 Uncharacterized conser 45.0 2.1E+02 0.0046 35.5 11.8 94 301-413 412-506 (652)
135 PF12329 TMF_DNA_bd: TATA elem 44.7 2.1E+02 0.0046 26.1 9.2 48 719-766 3-53 (74)
136 PF07200 Mod_r: Modifier of ru 44.1 2.8E+02 0.0062 27.3 10.8 113 103-215 29-141 (150)
137 cd08915 V_Alix_like Protein-in 43.9 4.6E+02 0.0099 29.4 13.6 91 60-150 245-337 (342)
138 PRK09841 cryptic autophosphory 43.4 4.7E+02 0.01 32.6 14.8 141 173-349 256-405 (726)
139 PF10168 Nup88: Nuclear pore c 42.3 7.4E+02 0.016 31.4 16.2 35 98-132 636-670 (717)
140 PF14772 NYD-SP28: Sperm tail 40.1 1.2E+02 0.0026 28.5 7.3 58 353-413 21-87 (104)
141 KOG0243 Kinesin-like protein [ 39.5 1.1E+03 0.023 31.5 47.5 161 131-372 406-569 (1041)
142 PF07106 TBPIP: Tat binding pr 39.4 1.5E+02 0.0033 29.9 8.4 86 132-217 75-164 (169)
143 PF06818 Fez1: Fez1; InterPro 39.4 5.4E+02 0.012 28.1 17.4 151 59-223 7-177 (202)
144 PRK04863 mukB cell division pr 39.3 1.2E+03 0.026 32.1 72.4 68 705-772 1051-1121(1486)
145 PF08826 DMPK_coil: DMPK coile 39.2 74 0.0016 28.5 5.3 44 100-143 17-60 (61)
146 KOG0946 ER-Golgi vesicle-tethe 37.5 1.1E+03 0.023 30.9 26.9 37 376-412 801-837 (970)
147 cd09237 V_ScBro1_like Protein- 36.2 6.9E+02 0.015 28.4 13.7 89 61-149 253-350 (356)
148 PF06005 DUF904: Protein of un 36.1 1.3E+02 0.0028 27.5 6.5 43 845-887 29-71 (72)
149 PRK11519 tyrosine kinase; Prov 36.0 9.2E+02 0.02 30.1 15.6 139 173-347 256-403 (719)
150 PF13870 DUF4201: Domain of un 35.9 4.9E+02 0.011 26.6 18.1 109 294-412 60-169 (177)
151 KOG1937 Uncharacterized conser 35.7 9E+02 0.02 29.6 26.9 274 9-333 237-517 (521)
152 PF14992 TMCO5: TMCO5 family 35.7 7.2E+02 0.016 28.4 13.4 157 660-833 15-175 (280)
153 PF14197 Cep57_CLD_2: Centroso 35.7 1.6E+02 0.0035 26.7 6.9 60 221-294 3-62 (69)
154 PF08232 Striatin: Striatin fa 34.9 1.6E+02 0.0035 29.5 7.5 50 211-260 20-69 (134)
155 KOG4360 Uncharacterized coiled 34.6 8.6E+02 0.019 30.1 14.4 133 8-144 168-304 (596)
156 PF03962 Mnd1: Mnd1 family; I 34.2 3.9E+02 0.0086 28.1 10.6 102 128-239 68-172 (188)
157 PF12777 MT: Microtubule-bindi 33.3 1.1E+02 0.0024 34.5 6.9 110 783-892 216-331 (344)
158 TIGR01010 BexC_CtrB_KpsE polys 33.2 7.4E+02 0.016 27.8 15.4 141 182-348 168-312 (362)
159 PF12240 Angiomotin_C: Angiomo 33.0 5.7E+02 0.012 28.0 11.6 102 295-412 55-167 (205)
160 cd09235 V_Alix Middle V-domain 31.7 6.9E+02 0.015 28.3 12.7 133 3-146 195-330 (339)
161 PF09744 Jnk-SapK_ap_N: JNK_SA 31.0 4.9E+02 0.011 27.1 10.4 88 116-205 37-131 (158)
162 KOG0992 Uncharacterized conser 30.9 1.1E+03 0.024 29.2 29.7 106 109-215 216-339 (613)
163 PF14932 HAUS-augmin3: HAUS au 30.5 3.8E+02 0.0081 29.3 10.1 121 788-908 68-195 (256)
164 KOG1029 Endocytic adaptor prot 30.0 1.4E+03 0.03 30.0 30.5 116 669-786 485-603 (1118)
165 PF05008 V-SNARE: Vesicle tran 29.4 3.5E+02 0.0076 23.9 8.0 28 294-321 22-49 (79)
166 TIGR03007 pepcterm_ChnLen poly 29.4 9.7E+02 0.021 28.0 19.1 120 180-299 157-295 (498)
167 PF11932 DUF3450: Protein of u 29.2 5.9E+02 0.013 27.5 11.2 72 818-893 51-122 (251)
168 PF10211 Ax_dynein_light: Axon 28.9 7.1E+02 0.015 26.3 16.7 58 380-437 32-91 (189)
169 KOG0946 ER-Golgi vesicle-tethe 28.5 1.5E+03 0.032 29.8 25.5 52 592-643 665-716 (970)
170 PF10481 CENP-F_N: Cenp-F N-te 28.5 7E+02 0.015 28.7 11.7 107 172-289 20-126 (307)
171 PF06818 Fez1: Fez1; InterPro 28.3 8.1E+02 0.018 26.8 16.3 48 266-324 11-58 (202)
172 KOG0612 Rho-associated, coiled 27.9 1.7E+03 0.037 30.4 55.5 98 126-232 462-559 (1317)
173 COG2433 Uncharacterized conser 27.1 3.5E+02 0.0076 33.8 9.8 83 163-247 422-505 (652)
174 TIGR02449 conserved hypothetic 26.8 89 0.0019 28.4 3.8 50 838-887 4-53 (65)
175 TIGR03017 EpsF chain length de 26.6 1E+03 0.022 27.3 19.5 131 176-306 163-309 (444)
176 PF11559 ADIP: Afadin- and alp 26.0 6.6E+02 0.014 24.9 12.4 79 112-210 42-120 (151)
177 PF14818 DUF4482: Domain of un 25.8 94 0.002 31.9 4.3 47 203-252 3-50 (141)
178 TIGR01005 eps_transp_fam exopo 25.0 1.4E+03 0.03 28.4 19.5 49 258-306 295-343 (754)
179 PRK10884 SH3 domain-containing 24.7 3.1E+02 0.0067 29.5 8.0 34 296-336 117-150 (206)
180 PF10498 IFT57: Intra-flagella 24.2 5.6E+02 0.012 29.8 10.5 95 4-108 232-326 (359)
181 KOG4460 Nuclear pore complex, 24.1 1.5E+03 0.033 28.5 15.2 154 15-187 568-733 (741)
182 KOG4403 Cell surface glycoprot 23.4 1.4E+03 0.031 27.9 16.9 149 486-638 242-409 (575)
183 PF11559 ADIP: Afadin- and alp 23.2 7.5E+02 0.016 24.6 13.5 95 70-177 53-147 (151)
184 PF04111 APG6: Autophagy prote 22.9 9.5E+02 0.021 27.3 11.7 118 267-412 11-130 (314)
185 PF12329 TMF_DNA_bd: TATA elem 22.9 4.5E+02 0.0098 24.0 7.6 31 362-392 28-58 (74)
186 PF01920 Prefoldin_2: Prefoldi 22.8 5.3E+02 0.011 23.5 8.2 38 123-160 63-100 (106)
187 PRK02119 hypothetical protein; 22.8 3.4E+02 0.0073 24.8 6.8 52 789-840 3-54 (73)
188 PF04156 IncA: IncA protein; 22.7 8.2E+02 0.018 24.9 13.0 41 178-218 82-122 (191)
189 cd07685 F-BAR_Fes The F-BAR (F 22.5 1.1E+03 0.024 26.4 16.0 146 191-342 62-218 (237)
190 TIGR03495 phage_LysB phage lys 22.3 4.7E+02 0.01 26.8 8.3 75 226-332 22-96 (135)
191 PF09744 Jnk-SapK_ap_N: JNK_SA 21.8 6.8E+02 0.015 26.1 9.5 51 854-904 88-138 (158)
192 PF10146 zf-C4H2: Zinc finger- 21.6 1.1E+03 0.024 25.9 12.3 49 41-96 32-80 (230)
193 cd09236 V_AnPalA_UmRIM20_like 21.4 1.2E+03 0.027 26.5 14.8 88 60-147 256-345 (353)
194 PF13949 ALIX_LYPXL_bnd: ALIX 21.3 1E+03 0.023 25.6 17.0 93 60-152 195-289 (296)
195 PF04859 DUF641: Plant protein 21.1 1.5E+02 0.0033 30.0 4.7 65 267-338 57-121 (131)
196 PF05278 PEARLI-4: Arabidopsis 21.0 1.3E+03 0.027 26.4 13.2 42 822-867 213-254 (269)
197 PF14197 Cep57_CLD_2: Centroso 20.8 4.1E+02 0.0089 24.2 6.8 47 262-308 2-48 (69)
198 KOG0972 Huntingtin interacting 20.6 1.4E+03 0.03 26.7 14.1 74 199-276 210-284 (384)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.62 E-value=1.9e-07 Score=119.21 Aligned_cols=543 Identities=22% Similarity=0.258 Sum_probs=306.4
Q ss_pred hhHHHHHHHHHHHHhhh----hhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHH
Q 040943 62 EEISEVKQLFEGLKRSL----TEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAE 137 (950)
Q Consensus 62 eEi~~~k~~~e~L~~~L----~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~e 137 (950)
+++..++...+++...+ .+|.....++....+.+-. |++.+.++-.+++.+=.++.+.....+..+.+++....-
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~-~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~ 1014 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS-LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKA 1014 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555543 3566666667766776665 777887777777776666666555555555555555555
Q ss_pred HhhhhhhhhhhhhHhhhhhhhhhcchhhhhh-hHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhH
Q 040943 138 IEGLKGLLSASQKKCVKAESEAKAPKKLRER-DDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEH 216 (950)
Q Consensus 138 i~~lk~~ls~~ekkc~eaek~a~a~ke~~~r-ddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ 216 (950)
.+++...+..-+. ...+ .-....+|-..+++++.|+=.+++-.-+..--.++..++ .+++|
T Consensus 1015 ~~kle~~l~~le~--------------~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l--~kke~-- 1076 (1930)
T KOG0161|consen 1015 KAKLEQQLDDLEV--------------TLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQL--KKKES-- 1076 (1930)
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHH--
Confidence 5555544443322 2221 123355667777888888766666555444444444442 33444
Q ss_pred hHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHH---hHHHHHhhh
Q 040943 217 ERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDA---KSQLECLTN 293 (950)
Q Consensus 217 ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ea---rs~ie~Lt~ 293 (950)
|.+.+.-.+.-++.-+---++...+|+.|+.-=.+-|..|...|.-+|-..+++.+.|..+-.++++. -.....++.
T Consensus 1077 El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~ 1156 (1930)
T KOG0161|consen 1077 ELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNK 1156 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444455566777777777777888888888899999999999999999999887 445567889
Q ss_pred hchhHHHHHHhhhhhhhH----HHHHH--------HHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHH
Q 040943 294 QRDKEIAALRHSLGTKET----FYKEM--------EYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSV 361 (950)
Q Consensus 294 ~rd~eIa~LR~sL~~Ket----~~kE~--------ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~L 361 (950)
+|+-|++.||..|.+... ...++ .+--+-+++.-+.=....|+.+..|...++-..-+..+-
T Consensus 1157 k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~------ 1230 (1930)
T KOG0161|consen 1157 KREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLS------ 1230 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 999999999988865432 22222 222222333333333333444443333222111111110
Q ss_pred HHhhHHHHHhhhhhHH---HHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhH
Q 040943 362 EQMHRDCSANLRAKEA---EWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELEND 438 (950)
Q Consensus 362 Eq~Hr~Cs~~LraKEa---EW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql~~qNeE~s~mllvl~k~ 438 (950)
.--.++...-|.-|+ +-...+.+++..++++-.+..-.-..+.++...|+.....+.++ +...+.+-.-++.+
T Consensus 1231 -~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~---~r~~~~~~~qle~~ 1306 (1930)
T KOG0161|consen 1231 -SEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSAL---SRDKQALESQLEEL 1306 (1930)
T ss_pred -hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 000011111122221 11111222222222222222222222222222222211111111 22222333344456
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhH---HHHHhhhhhHHH-------HhHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHH
Q 040943 439 QEMLEKSLRCQRHLEEQAKQIESDS---ERKLGEVSNALD-------IANLELAKEREKTASLSEVVESLDHIEEQRVLM 508 (950)
Q Consensus 439 ~E~le~S~r~Ql~lqeq~~q~E~~~---~eqLee~~~aL~-------~aqaelaeerEkvAsL~rriEsld~~Eeq~~lM 508 (950)
+.-++.-+|....+.....+.+++. .+++++--.+.. .++++.++-+-+...+..+ .++-+++.+..+
T Consensus 1307 k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~--~~eelee~kk~l 1384 (1930)
T KOG0161|consen 1307 KRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ--RLEELEELKKKL 1384 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 7777788888888888888888765 566666555443 4555555544444333222 244556777788
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhHHHHHHHHhHHhhhhHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 040943 509 EKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELEE 588 (950)
Q Consensus 509 QkELd~yKEMLEeSSr~Ql~Lkeq~lq~E~dlKekL~e~~daLD~AnsELaek~~E~s~~Efel~~wKs~~e~LK~~leE 588 (950)
+..+..+.+.++.++..-.-|+.-- +.++-.+..+..++++..+..+.---...+++--|--||...+.|-..++.
T Consensus 1385 ~~~lq~~qe~~e~~~~~~~~Lek~k----~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~ 1460 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAK----NRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA 1460 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998876666554433 234444677777787776555554445666788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q 040943 589 NQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLE 639 (950)
Q Consensus 589 n~~lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~~i~~lq~qi~~lE 639 (950)
.+.--|.+++.++.-...-+.+..+.+.+...-+.....|.++-.++..++
T Consensus 1461 aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~ 1511 (1930)
T KOG0161|consen 1461 AQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGG 1511 (1930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877666666555554444444433444444444444333
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=4.3e-06 Score=104.88 Aligned_cols=625 Identities=14% Similarity=0.157 Sum_probs=285.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhh
Q 040943 196 LEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYD 275 (950)
Q Consensus 196 Leeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~ 275 (950)
+...+.++..-++....+|..-+..+-.++..++..||.-..-......++.++...+.....+-+-+..+++.+-..-+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 392 IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 66778888888888888998888888888889998888888877788888888888888877777777777765433322
Q ss_pred h---hhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHH
Q 040943 276 N---TFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLA 352 (950)
Q Consensus 276 n---v~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~ 352 (950)
+ +-.+..++...++.++. +...+.+..-+..+-.-..+++..+.+|.++...+...-... |.-++--.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~ 542 (1311)
T TIGR00606 472 RILELDQELRKAERELSKAEK--NSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTR-------TQMEMLTK 542 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 2 22233333333433333 445666666666666666666666666555544433211110 01111112
Q ss_pred HHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhH----HHHHhhhhHHH
Q 040943 353 KLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSL----TLQLKMQNEEI 428 (950)
Q Consensus 353 kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~----~~Ql~~qNeE~ 428 (950)
.+..|.+.|..+-..+++.|+.-=-.|. .+ ..+...+.++...+.+++.+....... .+++..-..+.
T Consensus 543 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l 614 (1311)
T TIGR00606 543 DKMDKDEQIRKIKSRHSDELTSLLGYFP-------NK-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNEL 614 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555444445444544211331 11 334444555555555555554442222 11211111222
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHH
Q 040943 429 SVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLM 508 (950)
Q Consensus 429 s~mllvl~k~~E~le~S~r~Ql~lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL~rriEsld~~Eeq~~lM 508 (950)
.-+...|+.+.+-+. ..| .+ .+|.+-|......+..+..++.. ...+
T Consensus 615 ~~~~~eL~~~~~~i~----------~~~-~~-~~~~~~L~~~~~~l~~~~~~~~~---------------------~~~~ 661 (1311)
T TIGR00606 615 ESKEEQLSSYEDKLF----------DVC-GS-QDEESDLERLKEEIEKSSKQRAM---------------------LAGA 661 (1311)
T ss_pred HHHHHHHHHHHHHHh----------cCC-Cc-hhHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Confidence 222222222211111 000 00 11222222222333333222222 1112
Q ss_pred HHHHHHHHHHH--HhhhhhHHHHHHHHhhhh-hhhHHHHHHHHhHH----hhhh--------------------------
Q 040943 509 EKELQKNKEKL--EEASRYQLCIEEKAKQME-SDSKRKLQEATDAL----DIAN-------------------------- 555 (950)
Q Consensus 509 QkELd~yKEML--EeSSr~Ql~Lkeq~lq~E-~dlKekL~e~~daL----D~An-------------------------- 555 (950)
-.-+..|-+.. ....-|.+|-..=..+-+ ++|..+|..-.+.+ ....
T Consensus 662 ~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l 741 (1311)
T TIGR00606 662 TAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDL 741 (1311)
T ss_pred HHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 22223333333 333355555443333333 34444444333332 1111
Q ss_pred --HHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhhhhHHHHH
Q 040943 556 --SELAEKTSEGHQIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQ 633 (950)
Q Consensus 556 --sELaek~~E~s~~Efel~~wKs~~e~LK~~leEn~~lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~~i~~lq~ 633 (950)
.++.+...++.+++-++...++-.+.+...+.....-...+++ |+..|..-..+ ...+..++.
T Consensus 742 ~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~--------------~~ei~~l~~ 806 (1311)
T TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERF--------------QMELKDVER 806 (1311)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHH--------------HHHHHHHHH
Confidence 1222222222333333333333333333322222222222221 23333222222 334444455
Q ss_pred HHHHHHHHHHHHHH-------HHHHhhhhhhhhhhHHHHHHHhhhhhhhhhhHHHHHHHHhhhhhhhhHHHhhhhHHHHH
Q 040943 634 QILSLEQDLKLKAL-------EAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQI 706 (950)
Q Consensus 634 qi~~lE~~lk~k~l-------~aa~~ak~E~a~s~~~Ek~~L~qi~~EKd~~IddLQk~I~~LEqEsl~rELe~A~lak~ 706 (950)
++..++..+..... .+-+.+.-..-.....+.+.+..-..-+..-|..||..|.-+..+.+. +..++-.+-
T Consensus 807 qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klk--l~~~l~~r~ 884 (1311)
T TIGR00606 807 KIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ--IGTNLQRRQ 884 (1311)
T ss_pred HHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 55555544432211 000000000001111112222222222223344444444333322211 111222222
Q ss_pred Hhhh---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhhhhHHHHhHHHHHHHHH-------HHHHHhhHH-
Q 040943 707 CAER---SFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAI-------EAWEKISAA- 775 (950)
Q Consensus 707 eaEr---s~e~EKe~liqiv~EKD~~IddLq~~V~slEq~f~~sl~sfs~~laEkq~Ei~~~~-------~a~eki~~a- 775 (950)
..+. .+..+.+.+...+.+.+..|..+...+..++..+...-........+.+.+|+.+. ..|..|..-
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~ 964 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKI 964 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 23445556666678888888888888888888887766666666666665555544 444444431
Q ss_pred -----HHhhhhhhhhh--hhHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHH--HHHHHhhhHHHHh-hhcc
Q 040943 776 -----ETLAMLEIEEK--KLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALK--QREMKNLTNQLEE-NLTT 845 (950)
Q Consensus 776 -----e~La~leieeK--~mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~ak--q~e~~~l~~~me~-k~r~ 845 (950)
.-|..++-+.. .--|.+++.++..+..++......++.+....-.+...+.-. +.++..+..++.+ ..+.
T Consensus 965 ~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~ 1044 (1311)
T TIGR00606 965 QDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEM 1044 (1311)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11332221111 233466666666666667766666666666666666665555 3333333333310 0011
Q ss_pred hHHHHHHHHhhhHhHHHHHHHhhHHhhhHHhhhhcccccccc
Q 040943 846 SDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSK 887 (950)
Q Consensus 846 se~~v~eLk~en~~l~~~~~~lssEr~~Ll~~~~gl~d~i~~ 887 (950)
.+.-...++.+...|-+.+..|++.+..+.|.+..+-+.|..
T Consensus 1045 ~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~ 1086 (1311)
T TIGR00606 1045 GQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKH 1086 (1311)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111224556666666666667777777777666666655543
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=0.0004 Score=87.73 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcC-ccchHHHHHHHhHHHHHhh---HHHHHhhhhhHHHHhHhH
Q 040943 308 TKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAG-SSSSLAKLRNKLRSVEQMH---RDCSANLRAKEAEWSSQM 383 (950)
Q Consensus 308 ~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~ag-as~sl~kLr~Klr~LEq~H---r~Cs~~LraKEaEW~~Q~ 383 (950)
.......++......|..-+..+...+..+-+.=....| .+.+ ..+...+..+..-- +...+.+...-++-..++
T Consensus 529 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l 607 (1311)
T TIGR00606 529 HHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNK-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNK 607 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666655555432222222 1111 22222222222111 222333333334455566
Q ss_pred HhhHHhhhhhhhhhhhHHHHHH
Q 040943 384 QQMDAEMNGYRSELERKDAALK 405 (950)
Q Consensus 384 eKL~~el~~~~s~L~sKd~~i~ 405 (950)
..+..+++.+..+|++....|.
T Consensus 608 ~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 608 NHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666665555
No 4
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.94 E-value=0.00047 Score=83.40 Aligned_cols=276 Identities=24% Similarity=0.326 Sum_probs=150.9
Q ss_pred hhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHH
Q 040943 104 RKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFE 183 (950)
Q Consensus 104 ~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e 183 (950)
...-.+..-|-..|+++..+..-+.+.+.....+|.+|.+.| +.+-..+ .+...-.....-+..+|-....++
T Consensus 124 er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L---~~~g~~~----~~~~~~~~~~~~~~~~e~~~~~le 196 (775)
T PF10174_consen 124 ERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML---QSKGLSA----EAEEEDNEALRRIREAEARIMRLE 196 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCcc----cchhhhhHHHHHHHHHHHHHHHHH
Confidence 333445556667888999999999999999999999998887 2332322 222222223334667777778888
Q ss_pred HHhhhhHHHhhhH-HHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhH--HhhhHHHHh
Q 040943 184 NQLKWKKEQFKHL-EEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQ--ALSHEESRR 260 (950)
Q Consensus 184 ~qLkwk~Eqf~hL-eeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnq--aLahEEs~r 260 (950)
..|.|+.-.-.++ +..|.++.-.--.++.+ =--++||...+=..+| -|+.++++..+.|=.+ +++.. -|
T Consensus 197 ~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~---alq~~ie~Kd~ki~~l---Er~l~~le~Ei~~L~~~~~~~~~--~r 268 (775)
T PF10174_consen 197 SLLERKEKEHMEAREQLHRRLQMERDDAETE---ALQTVIEEKDTKIASL---ERMLRDLEDEIYRLRSRGELSEA--DR 268 (775)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhcCCCchhHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccccccc--ch
Confidence 8887776655555 44555554433333322 0022333322222222 2334444544444422 22222 23
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHH
Q 040943 261 KYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEA 340 (950)
Q Consensus 261 K~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEa 340 (950)
-.+.-++.-++..-.-..+.|..++.+ |+.|++ |..
T Consensus 269 ~~~~k~le~~~s~~~~mK~k~d~~~~e------------------L~rk~~--------------E~~------------ 304 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAMKSKMDRLKLE------------------LSRKKS--------------ELE------------ 304 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH------------------HHHHHH--------------HHH------------
Confidence 333222222221111112222222211 222221 111
Q ss_pred HhhhcCccchHHHHHHHhHHHHHhhHHH-------HHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhh
Q 040943 341 QIQKAGSSSSLAKLRNKLRSVEQMHRDC-------SANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELED 413 (950)
Q Consensus 341 qI~~agas~sl~kLr~Klr~LEq~Hr~C-------s~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~ 413 (950)
.+..+|..++..|.+| -.-|++|+.+. +.|.+|++.+++.|+.|...|...+.-++
T Consensus 305 ------------~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~----~~Lqsdve~Lr~rle~k~~~l~kk~~~~~- 367 (775)
T PF10174_consen 305 ------------ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEA----EMLQSDVEALRFRLEEKNSQLEKKQAQIE- 367 (775)
T ss_pred ------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1122222222222222 23346666543 46779999999999999998877665444
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHhhhHH
Q 040943 414 YHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSE 464 (950)
Q Consensus 414 c~s~~~Ql~~qNeE~s~mllvl~k~~E~le~S~r~Ql~lqeq~~q~E~~~~ 464 (950)
--++|.+.+...+..+++++....+-=..++.++..++..++
T Consensus 368 ---------~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 368 ---------KLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888999999999888877788888877777664
No 5
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.92 E-value=0.00098 Score=85.68 Aligned_cols=213 Identities=15% Similarity=0.187 Sum_probs=145.2
Q ss_pred hhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHH
Q 040943 168 RDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQ 247 (950)
Q Consensus 168 rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~ 247 (950)
-..=|..+.+.+..+..+.+|.+.+|.||+.-++-+...+...++=-.. .++.+..-++.|.++.+=+.+.+.
T Consensus 222 L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s-------~~~kf~~El~~q~kL~eL~ks~~e 294 (1822)
T KOG4674|consen 222 LEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAES-------SEEKFEKELSTQKKLNELWKSKLE 294 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667777888888898889998888777777666655543322 267777888999999999999988
Q ss_pred HhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhh
Q 040943 248 LCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLEREN 327 (950)
Q Consensus 248 mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN 327 (950)
=|.+-++- |.-.|.+++..|++|-..|.+-. ..|-.+=.++....++++-...+|+.+.
T Consensus 295 e~~~~~~e-------l~~~i~~~~klled~~~~~~e~~--------------d~l~e~~~sl~~~~~~~~k~~~~le~~l 353 (1822)
T KOG4674|consen 295 ELSHEVAE-------LQRAIEELEKLLEDASERNKENT--------------DQLKELEQSLSKLNEKLEKKVSRLEGEL 353 (1822)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77655442 44456777777877777776652 3344444566677788888899999998
Q ss_pred HHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHH
Q 040943 328 QELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKEL 407 (950)
Q Consensus 328 ~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eL 407 (950)
..-.+++.. -+..++++..+.+=.+|+.+ |..-++-+..+ ....-|++-+--+|+.+.-.|.|....+++.
T Consensus 354 ~~an~~~~~-----~~~~~~~s~~~a~~s~~~~~---~~sLtk~ys~~-~~~qqqle~~~lele~~~~~l~s~~eev~~~ 424 (1822)
T KOG4674|consen 354 EDANDSLSA-----TGESSMVSEKAALASSLIRP---GSSLTKLYSKY-SKLQQQLESLKLELERLQNILSSFKEEVKQK 424 (1822)
T ss_pred HhhhhhHHh-----hcccchhhhHHHHHHhhccc---chhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888776 12223333223344555555 66655544444 4777777777777788877788877777777
Q ss_pred HHHHhhhhhH
Q 040943 408 KMELEDYHSL 417 (950)
Q Consensus 408 q~ELe~c~s~ 417 (950)
--.|..-++.
T Consensus 425 ~p~lk~qr~~ 434 (1822)
T KOG4674|consen 425 APILKEQRSE 434 (1822)
T ss_pred hhHHHHHHHH
Confidence 7777765555
No 6
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.78 E-value=0.0016 Score=78.94 Aligned_cols=290 Identities=18% Similarity=0.237 Sum_probs=192.7
Q ss_pred HHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchh----hhhhhHHH----HhhHHhhHHHH
Q 040943 112 VLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKK----LRERDDML----LKLEDENSKFE 183 (950)
Q Consensus 112 ~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke----~~~rddm~----~klEeE~~~~e 183 (950)
.|-.++|.-..+.-..|..++-...||..|++-...+..--...+|.+...+. |..+=|.+ ..=..|...+.
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888999999999999999999977554444333333333333222 22121221 22234666777
Q ss_pred HHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHH
Q 040943 184 NQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYL 263 (950)
Q Consensus 184 ~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~l 263 (950)
-+|.=+.++|.-.-.=+..|+..+++.. .+.+.|.-.+..|...||.....++..+.++.-+...+++ +
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke----~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~-------~ 376 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKE----QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR-------L 376 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 7888888888877667777777777654 5567888899999999999999999999988877766665 6
Q ss_pred HHHHhhhhhhhhhhhHHHHHHhHHHHHhh---hhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHH
Q 040943 264 EVQVSEFRTHYDNTFAEYQDAKSQLECLT---NQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEA 340 (950)
Q Consensus 264 E~e~Se~K~~~~nv~~e~~ears~ie~Lt---~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEa 340 (950)
-.+|++++.+|+..-.+..-+...||.|. ..+|..+..++.-|.+ .+=+-.-++-.++||.=+.+.-.....+.+.
T Consensus 377 ~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~ 455 (775)
T PF10174_consen 377 QGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQ 455 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999988888888888876665 4567777777777774 3333333444456665555554444444433
Q ss_pred Hhhhc-CccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhH
Q 040943 341 QIQKA-GSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSL 417 (950)
Q Consensus 341 qI~~a-gas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~ 417 (950)
..... .-..-+..+++.+..|......--..|- +-..++.-+..+...+.+...-++..|+.|.++|+.-..-
T Consensus 456 r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs----Ek~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek 529 (775)
T PF10174_consen 456 RERAEKERQEELETYQKELKELKAKLESLQKELS----EKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREK 529 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhH
Confidence 22211 1112244555555555444444333333 3446777777888888888889999999999999874443
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.0016 Score=78.45 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=16.6
Q ss_pred HhhHHhhhhhhhhhhhHHHHHHHHHHHHhhh
Q 040943 384 QQMDAEMNGYRSELERKDAALKELKMELEDY 414 (950)
Q Consensus 384 eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c 414 (950)
..+...+++...+++.....+..++.+++.+
T Consensus 519 ~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l 549 (880)
T PRK02224 519 EDLEELIAERRETIEEKRERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333445555555555555555555555544
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.77 E-value=0.003 Score=81.53 Aligned_cols=685 Identities=19% Similarity=0.236 Sum_probs=318.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHH
Q 040943 3 RIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQAR-------ELNEKTEEISEVKQLFEGLK 75 (950)
Q Consensus 3 ~v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~-------E~~~k~eEi~~~k~~~e~L~ 75 (950)
++|...-++.-+++-+.-++-.++..+..+++--...+.-+.+++...++-.. ++......|.-+......|.
T Consensus 388 k~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~ 467 (1822)
T KOG4674|consen 388 KLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLK 467 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888888888888888888888888888888888887664 44455555556666666666
Q ss_pred hhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhh--------------------------hhchhHHH
Q 040943 76 RSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEAN--------------------------EKNIDQEQ 129 (950)
Q Consensus 76 ~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~--------------------------~~~~dqe~ 129 (950)
.+++...-=++++...++.|--...= +..=-++.|+..-...++. .+|+.+=.
T Consensus 468 ~~~~~~~renk~l~~~~sdlsrqv~~-Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~ 546 (1822)
T KOG4674|consen 468 KQLNDLERENKLLEQQISDLSRQVNV-LLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLN 546 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666666655555444211100 0000111111111111111 12222222
Q ss_pred H--------------------------HHhHHHHHhhhhhhhhhhhhHhhhh--------------hh--------hhhc
Q 040943 130 K--------------------------VNVFKAEIEGLKGLLSASQKKCVKA--------------ES--------EAKA 161 (950)
Q Consensus 130 ~--------------------------~~~~~~ei~~lk~~ls~~ekkc~ea--------------ek--------~a~a 161 (950)
+ ++..++.|+-|+..+-...-...-+ +- ++-.
T Consensus 547 ~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~ 626 (1822)
T KOG4674|consen 547 AVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALD 626 (1822)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhc
Confidence 3 3333333333333332222111111 00 0111
Q ss_pred chhhhhh-hHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhh---------hhhHhHh-HHhhhhhhhhh
Q 040943 162 PKKLRER-DDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKK---------EWEHERS-TLLDAISSLQT 230 (950)
Q Consensus 162 ~ke~~~r-ddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skk---------EW~~ers-~LlDeI~sLq~ 230 (950)
......+ +--+..|+. .++--.+.+.+.-+-|++....++.+..+-+. ....+|- .|-+.|..+..
T Consensus 627 ~t~~~~~~e~~l~qLe~---~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~ 703 (1822)
T KOG4674|consen 627 QTEAPRAKEKRLRQLEN---ELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKE 703 (1822)
T ss_pred ccccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 112222222 22222333334445555555555554443322 3344552 23334443333
Q ss_pred hhh---hhhh----hhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhh-------hhhhhhhhHHHHHHhHHHHHhhhhch
Q 040943 231 SLD---SQTR----ISGDLQNRLQLCNQALSHEESRRKYLEVQVSEF-------RTHYDNTFAEYQDAKSQLECLTNQRD 296 (950)
Q Consensus 231 ~Ld---Sqtr----~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~-------K~~~~nv~~e~~ears~ie~Lt~~rd 296 (950)
..+ .++- +.-+-+...+.-.+.|.+-.+.-+.++++++.+ ++.+.+++.+|+-.-.
T Consensus 704 e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~---------- 773 (1822)
T KOG4674|consen 704 EVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSA---------- 773 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 333 2211 222233333444445555556667788888774 3445555554443321
Q ss_pred hHHHHHHhhhhhhhHHHHHHHH----HHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhh
Q 040943 297 KEIAALRHSLGTKETFYKEMEY----QATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANL 372 (950)
Q Consensus 297 ~eIa~LR~sL~~Ket~~kE~ey----~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~L 372 (950)
+...||..+..=.|+.++.+. ..+++++.+.+|-..|-.+..- +..-.+.||.| -.+
T Consensus 774 -e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k----------lq~~~~~~r~l---~~~----- 834 (1822)
T KOG4674|consen 774 -EQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK----------LQEKSSDLREL---TNS----- 834 (1822)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH---Hhh-----
Confidence 233333333333344333322 2234444444444433222210 11222222222 111
Q ss_pred hhhHHHH-hHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHH-----HHhhh----hHHHHHHHHHHh------
Q 040943 373 RAKEAEW-SSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTL-----QLKMQ----NEEISVMLLELE------ 436 (950)
Q Consensus 373 raKEaEW-~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~-----Ql~~q----NeE~s~mllvl~------ 436 (950)
+.+...| ..++..++.+++..+..|.++.+.|..|.+.+.+=...+. ..-+. |+.+.+..-.|.
T Consensus 835 ~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~ 914 (1822)
T KOG4674|consen 835 LEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEI 914 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHH
Confidence 1223333 4566777777777777777777777777776665332211 11122 444443332232
Q ss_pred -hHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhhhHh-------hhhh----------
Q 040943 437 -NDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEV-------VESL---------- 498 (950)
Q Consensus 437 -k~~E~le~S~r~Ql~lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL~rr-------iEsl---------- 498 (950)
.+++-|..+...=...++.+.-+|..+..--...+...-..-+.|.....++-+|..+ +..|
T Consensus 915 ~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~ 994 (1822)
T KOG4674|consen 915 TDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKG 994 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2233333333222233333333332221000000111112222233333333333322 2211
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhHHHH-------HHHHhHHhhhhHHHHhhhhccc
Q 040943 499 -----DHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKL-------QEATDALDIANSELAEKTSEGH 566 (950)
Q Consensus 499 -----d~~Eeq~~lMQkELd~yKEMLEeSSr~Ql~Lkeq~lq~E~dlKekL-------~e~~daLD~AnsELaek~~E~s 566 (950)
...-.+...++.++..|..+.. ++.-+..+++..+ +.+.+.-+.=....++.+..+.
T Consensus 995 ~e~~~~~~~~e~~sl~ne~~~~~~~~s-----------~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~ 1063 (1822)
T KOG4674|consen 995 KEDKLLDLSREISSLQNELKSLLKAAS-----------QANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLI 1063 (1822)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222233444443333322 2233333333333 3334444444445666666665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 040943 567 QIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLEQDLKLKA 646 (950)
Q Consensus 567 ~~Efel~~wKs~~e~LK~~leEn~~lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~~i~~lq~qi~~lE~~lk~k~ 646 (950)
.+--++..-+.-+.+|+...+--+..-.+.++ ...++++.|..-+....++|.+|..|-..+..-+-..-
T Consensus 1064 kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~----------~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s 1133 (1822)
T KOG4674|consen 1064 KLREEFAKCNDELLKLKKSRESRHALLSEQER----------DWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELS 1133 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhHHhhccc----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556665556666665554444444444444 44445555555555555666666555555443322221
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHhhhhhhhhhhHHHHHHHHhhhhhhhhHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040943 647 LEAASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEHEKESLIQLLEEK 726 (950)
Q Consensus 647 l~aa~~ak~E~a~s~~~Ek~~L~qi~~EKd~~IddLQk~I~~LEqEsl~rELe~A~lak~eaErs~e~EKe~liqiv~EK 726 (950)
.-++. .....+.+. ..||+..|-+|= +|.+-+- +++ -....|+..|.+-++-=
T Consensus 1134 ~~~~~---------------~n~S~~~~g---~sdL~~iv~~LR-----~Ekei~~-tk~---~~lk~e~~~L~qq~~~~ 1186 (1822)
T KOG4674|consen 1134 QQSAV---------------SNLSAMLLG---LSDLQNIVSFLR-----KEKEIAE-TKL---DTLKRENARLKQQVASL 1186 (1822)
T ss_pred hhhhh---------------ccccccccc---hHHHHHHHHHHH-----hHHHHHh-hhH---HHHHHHHHHHHHHHHHH
Confidence 11000 112233333 678888888764 3332221 111 12456888999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhh--HHHHhHHHHHHHHHHH
Q 040943 727 NQKIDDLLQLVRSLEERFNSSLNSFS--SQLAGKQAEISLAIEA 768 (950)
Q Consensus 727 D~~IddLq~~V~slEq~f~~sl~sfs--~~laEkq~Ei~~~~~a 768 (950)
+++|+|||...+-.+-.+..+..+.. .-+..+-.+||.|++-
T Consensus 1187 ~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~Es 1230 (1822)
T KOG4674|consen 1187 NRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRES 1230 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999966655443 3445777888888876
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=98.68 E-value=0.0029 Score=76.30 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=56.1
Q ss_pred HHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHh
Q 040943 279 AEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKL 358 (950)
Q Consensus 279 ~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Kl 358 (950)
.+|......++.+. +++..+..-+...+.-+.++..++..++....++...++.|+. .|..+ +....+|.-+.
T Consensus 244 ~el~~~~~~l~~l~----~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~-~l~~~--~~~~~~l~~~~ 316 (880)
T PRK02224 244 EEHEERREELETLE----AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA-EAGLD--DADAEAVEARR 316 (880)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC--cchHHHHHHHH
Confidence 44444444444443 3455555555555555555555555555555555554555442 22222 33344444444
Q ss_pred HHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHH
Q 040943 359 RSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELK 408 (950)
Q Consensus 359 r~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq 408 (950)
..|+ +-.+.++..-.+++.++.++..+...+...+......+.+++
T Consensus 317 ~~l~----~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~ 362 (880)
T PRK02224 317 EELE----DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362 (880)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 223333333444445555555554555555555554444444
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.53 E-value=0.014 Score=76.48 Aligned_cols=206 Identities=22% Similarity=0.300 Sum_probs=103.1
Q ss_pred HHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH-------HHHHHHHHhhhhhhHHHHHHh
Q 040943 16 EKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEV-------KQLFEGLKRSLTEKESIIKCL 88 (950)
Q Consensus 16 EkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~-------k~~~e~L~~~L~eKEs~i~hL 88 (950)
.++..+|....+.++.+-.....-......+-.++..+..++.+-.+-++.+ ...+.+|..-+...+--+.+|
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444555555555555555555544433 234455555555555555666
Q ss_pred hhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhh
Q 040943 89 GAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRER 168 (950)
Q Consensus 89 ~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~r 168 (950)
..++.+|....++.-. .|+.-+..+.++|...|.+--+..-+.........+..+.+- .-.+.--..
T Consensus 1012 ~k~~~kle~~l~~le~-----------~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~--~l~kke~El 1078 (1930)
T KOG0161|consen 1012 NKAKAKLEQQLDDLEV-----------TLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN--QLKKKESEL 1078 (1930)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 5555555544444444 444444455566655554443333322222222222222111 111122233
Q ss_pred hHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhh
Q 040943 169 DDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQ 235 (950)
Q Consensus 169 ddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSq 235 (950)
-.|..+++++..-+..--|=.++-=.++.+..+.|-.. |++...-+..|+.|-.++-.|+..|+-+
T Consensus 1079 ~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e-r~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1079 SQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE-RASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665555555454444444455555444433 4555566777788888888888888776
No 11
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.30 E-value=0.035 Score=70.40 Aligned_cols=186 Identities=23% Similarity=0.309 Sum_probs=94.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhhhh----hhhHHHHhHHHHHHHHHHHHHHhhHHHHhhhhh-hhhhhhHHHHhHH
Q 040943 721 QLLEEKNQKIDDLLQLVRSLEERFNSSLN----SFSSQLAGKQAEISLAIEAWEKISAAETLAMLE-IEEKKLMIVELED 795 (950)
Q Consensus 721 qiv~EKD~~IddLq~~V~slEq~f~~sl~----sfs~~laEkq~Ei~~~~~a~eki~~ae~La~le-ieeK~mmI~ElE~ 795 (950)
.+..+.|..|+.+.+.+....+.+..-+. .+...|+.+=+....|.+.=.+|...+ ..|. |+...-.|.+-++
T Consensus 725 ~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~--~~l~~ie~~r~~V~eY~~ 802 (1201)
T PF12128_consen 725 ELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLE--KELKRIEERRAEVIEYED 802 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHH
Confidence 34467777777777777766666655332 444445544444444444422222111 1111 3444445555555
Q ss_pred HHHHHHHH-------HHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHHHHHh-
Q 040943 796 EISNVQQK-------LELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKL- 867 (950)
Q Consensus 796 ei~~~q~k-------L~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~~~~l- 867 (950)
.....=.+ --..+...+..++...++..++..++.+++....+++.++...+..+..+..--+.+-..+..+
T Consensus 803 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 882 (1201)
T PF12128_consen 803 WLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLA 882 (1201)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 54443222 3333444555566667777777777777777777777777777777776665554443333333
Q ss_pred ----hHHhhhHHhhhhcccccccccchhhHHHHHHHHHHHhhccc
Q 040943 868 ----SSERENLLGFLGGLGDRVSKFSDEDMQLMEMLGRLVQSLDS 908 (950)
Q Consensus 868 ----ssEr~~Ll~~~~gl~d~i~~~s~~D~~Lm~~L~~~~q~~d~ 908 (950)
+......-+.+..+...+.++...=..+++.+..-+..|++
T Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~ 927 (1201)
T PF12128_consen 883 ELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKAVERFKG 927 (1201)
T ss_pred hcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222223333334455555555666664
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.23 E-value=0.036 Score=67.77 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHhhhhc
Q 040943 280 EYQDAKSQLECLTNQR 295 (950)
Q Consensus 280 e~~ears~ie~Lt~~r 295 (950)
...+|+.-|+-|..+|
T Consensus 556 ~~~~a~~~i~~l~~~~ 571 (1164)
T TIGR02169 556 DDAVAKEAIELLKRRK 571 (1164)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 3444555555555444
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.21 E-value=0.038 Score=67.58 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHhhccc
Q 040943 892 DMQLMEMLGRLVQSLDS 908 (950)
Q Consensus 892 D~~Lm~~L~~~~q~~d~ 908 (950)
...+|.+...|-..|+.
T Consensus 1017 ~~~f~~~f~~~~~~f~~ 1033 (1164)
T TIGR02169 1017 REVFMEAFEAINENFNE 1033 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455554444444443
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=98.11 E-value=0.056 Score=65.27 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=20.5
Q ss_pred hHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHH
Q 040943 126 DQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDML 172 (950)
Q Consensus 126 dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~ 172 (950)
.+++.+....+++..+...+...+.....+++......++...-.-+
T Consensus 311 ~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~~~~~~~~~~l 357 (880)
T PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555444444444444444333333333333333
No 15
>PRK03918 chromosome segregation protein; Provisional
Probab=98.02 E-value=0.078 Score=64.04 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 040943 50 VEKQARELNEKTEEISEVKQLFEGLKR 76 (950)
Q Consensus 50 ~e~~~~E~~~k~eEi~~~k~~~e~L~~ 76 (950)
+..+..++.....++..+......++.
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~ 228 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKLEK 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.97 E-value=0.021 Score=61.16 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 040943 452 LEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEE 521 (950)
Q Consensus 452 lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL~rriEsld~~Eeq~~lMQkELd~yKEMLEe 521 (950)
|+.++..++..+...+......|..-.+++++=+..++...+.-. ..---...|..|+.+|..+|+.
T Consensus 242 Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~---~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 242 LERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ---ELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhC
Confidence 566677777777777888888888777777776666655554433 3333455688999999988874
No 17
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.96 E-value=1.6e-06 Score=104.92 Aligned_cols=108 Identities=26% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHh
Q 040943 206 QFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAK 285 (950)
Q Consensus 206 qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ear 285 (950)
+++-.|.-++.+|+.|-.+|..|.+.||+- ..+-+.-|..+|-+|+++.++++.++.+-....+..
T Consensus 142 ~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~--------------~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~ 207 (859)
T PF01576_consen 142 QLQKQKAKLEKEKSQLEAELDDLQAQLDSL--------------QKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELT 207 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556688999999999999888888774 445555577788999999988888776655555544
Q ss_pred HHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHH
Q 040943 286 SQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELL 331 (950)
Q Consensus 286 s~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~ 331 (950)
+....|.+. |+.|...|...++-+.-+......|+....++.
T Consensus 208 ~~k~kL~~E----~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk 249 (859)
T PF01576_consen 208 EQKAKLQSE----NSELTRQLEEAESQLSQLQREKSSLESQLEELK 249 (859)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444433332 455555555444444444444444444433333
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.59 E-value=0.5 Score=60.11 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHhhhcchHHHHHHHHhhhHhHHHHHHH-hhHHhhhHHhhhhc
Q 040943 838 QLEENLTTSDALVIELRSENRKLLEDVLK-LSSERENLLGFLGG 880 (950)
Q Consensus 838 ~me~k~r~se~~v~eLk~en~~l~~~~~~-lssEr~~Ll~~~~g 880 (950)
.++...++.-..+.+++.+.++....+.. .+..-..+|..+.|
T Consensus 988 dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~ 1031 (1163)
T COG1196 988 DLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFG 1031 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445566677777777777777666554 44455667777766
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.44 E-value=0.57 Score=57.33 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHHhHHhhhhHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 040943 543 KLQEATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELEENQ 590 (950)
Q Consensus 543 kL~e~~daLD~AnsELaek~~E~s~~Efel~~wKs~~e~LK~~leEn~ 590 (950)
.+..+...++.+..++++...+...+...+.....-+.++...+....
T Consensus 790 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~ 837 (1179)
T TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555566666666665566655444433
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.35 E-value=0.31 Score=52.30 Aligned_cols=86 Identities=27% Similarity=0.357 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhh
Q 040943 42 KIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEAN 121 (950)
Q Consensus 42 ~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~ 121 (950)
.+..+|..+...+.+...-.-++..++.-.++++.++.+-- .....++.+..+|--.+|.+.
T Consensus 55 el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~------------------~~~~~le~el~~lrk~ld~~~ 116 (312)
T PF00038_consen 55 ELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL------------------AERKDLEEELESLRKDLDEET 116 (312)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhhhhhhhhhhh
Confidence 46667777777777777777777777777777777776653 334456666677778899999
Q ss_pred hhchhHHHHHHhHHHHHhhhhhhh
Q 040943 122 EKNIDQEQKVNVFKAEIEGLKGLL 145 (950)
Q Consensus 122 ~~~~dqe~~~~~~~~ei~~lk~~l 145 (950)
..+.|++.++..++.||..++..-
T Consensus 117 ~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 117 LARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998876653
No 21
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.04 E-value=0.00012 Score=89.25 Aligned_cols=229 Identities=22% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhHH----HHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHH
Q 040943 264 EVQVSEFRTHYDNTFAE----YQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQE 339 (950)
Q Consensus 264 E~e~Se~K~~~~nv~~e----~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQE 339 (950)
..+|..+|+.|+..+.. .+++|-++ .+.|.++...+.....-+.-++....||..|+.++...|...+-
T Consensus 298 ~~El~~~k~K~e~e~~~~~EelEeaKKkL-------~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~ 370 (859)
T PF01576_consen 298 NAELEQWKKKYEEEAEQRTEELEEAKKKL-------ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQA 370 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555543322 33443333 34566666666666667777778888888888888876655542
Q ss_pred HHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHH
Q 040943 340 AQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTL 419 (950)
Q Consensus 340 aqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~ 419 (950)
+...|.| |-|.+++.. ++|...+..+..+++..........+.|-.|+.+|+.-...+-
T Consensus 371 -------~~~~LeK---Kqr~fDk~l-----------~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 371 -------AAAELEK---KQRKFDKQL-----------AEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------HHHHHHH---HHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 2222333 333332222 3677777777777777776666666666666666665444433
Q ss_pred HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHhhhH---HHHHhhhhhHHHH-------hHHHHHHHHHhhh
Q 040943 420 QLKMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDS---ERKLGEVSNALDI-------ANLELAKEREKTA 489 (950)
Q Consensus 420 Ql~~qNeE~s~mllvl~k~~E~le~S~r~Ql~lqeq~~q~E~~~---~eqLee~~~aL~~-------aqaelaeerEkvA 489 (950)
.+.-.| ..+...+.-+...+....++=..|+.....+|... ..+|++..++|.. .+.++..-|.
T Consensus 430 ~lere~---k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~--- 503 (859)
T PF01576_consen 430 ELEREN---KQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ--- 503 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH---HHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 221111 12223333333333333333333444444444432 4455555555432 2223322111
Q ss_pred hhhHhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 040943 490 SLSEVVE-SLDHIEEQRVLMEKELQKNKEKLEEASRYQ 526 (950)
Q Consensus 490 sL~rriE-sld~~Eeq~~lMQkELd~yKEMLEeSSr~Q 526 (950)
.+-|++. --+-+++.+..+|+.++.+..-||.-.+..
T Consensus 504 e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r 541 (859)
T PF01576_consen 504 EIERELQEKEEEFEETRRNHQRQLESLEAELEEERKER 541 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHH
Confidence 1223333 223455566666777777666666555543
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.91 E-value=1.6 Score=52.19 Aligned_cols=288 Identities=21% Similarity=0.322 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 040943 7 ELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIK 86 (950)
Q Consensus 7 EldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~ 86 (950)
+....+.+++.|.++|....+.++.|+.-.-+-....+.+..+.+.+-.+.......|..+..-...|..+..++++..-
T Consensus 165 e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~ 244 (546)
T PF07888_consen 165 EVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELD 244 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666665555555555555555555555555566666666666666666666666665
Q ss_pred HhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhh
Q 040943 87 CLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLR 166 (950)
Q Consensus 87 hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~ 166 (950)
.+...+- +.......+...-+..+.-+..-...+...++.+...++++.+++..+.+++.+..-.-+..-+...+
T Consensus 245 ~lk~~~~----elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~- 319 (546)
T PF07888_consen 245 KLKELKA----ELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNV- 319 (546)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5543221 11111111112222233333333334455666677777777777788877776666555554333333
Q ss_pred hhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHH
Q 040943 167 ERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRL 246 (950)
Q Consensus 167 ~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl 246 (950)
||-....|-.-.-. ..+|+| +|-+|-- ++|..+.-|..||.+|...+- ...+-.++|..++
T Consensus 320 -RDrt~aeLh~aRLe-~aql~~------qLad~~l----~lke~~~q~~qEk~~l~~~~e-------~~k~~ie~L~~el 380 (546)
T PF07888_consen 320 -RDRTMAELHQARLE-AAQLKL------QLADASL----ELKEGRSQWAQEKQALQHSAE-------ADKDEIEKLSREL 380 (546)
T ss_pred -HHHHHHHHHHhhhh-HHHHHH------HHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHH
Confidence 34444333221100 223333 2233322 456677788888887765443 2344578899999
Q ss_pred HHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHh
Q 040943 247 QLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERE 326 (950)
Q Consensus 247 ~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqE 326 (950)
+|=...|--+-+-|-.|++++...+.+= -| .+-|. ..+|..|+++|.- ..-.++.|--|
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n--~v-qlsE~-----------~rel~Elks~lrv-------~qkEKEql~~E 439 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCN--RV-QLSEN-----------RRELQELKSSLRV-------AQKEKEQLQEE 439 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh--HH-HHHHH-----------HHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 9888888888888888999887655432 11 22222 4556666665532 11223445566
Q ss_pred hHHHHHhHHHHHH
Q 040943 327 NQELLMSLKELQE 339 (950)
Q Consensus 327 N~el~~sLKElQE 339 (950)
+|+|+....-|..
T Consensus 440 kQeL~~yi~~Le~ 452 (546)
T PF07888_consen 440 KQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666653
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.86 E-value=2.5 Score=53.98 Aligned_cols=168 Identities=21% Similarity=0.340 Sum_probs=82.8
Q ss_pred hhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhh
Q 040943 213 EWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLT 292 (950)
Q Consensus 213 EW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt 292 (950)
.|..+-..+..++..++..+....+-.++++.++..++..+.-=..+.+-++.++++.+..++.+-.+......+++.+.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 459 (1163)
T COG1196 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666677777777777777777776666665555555555555544433333333333333332222
Q ss_pred hhc---hhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHH---HHHhHHHHHHHHhhhc-CccchHHHHHHHhHH-H---
Q 040943 293 NQR---DKEIAALRHSLGTKETFYKEMEYQATKLERENQE---LLMSLKELQEAQIQKA-GSSSSLAKLRNKLRS-V--- 361 (950)
Q Consensus 293 ~~r---d~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~e---l~~sLKElQEaqI~~a-gas~sl~kLr~Klr~-L--- 361 (950)
..+ ..+++.++..+....-.+...+.++..|+-..+. ++.-+..++-. +.|. |+.+.+-+...++-. +
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~Gv~G~v~~li~v~~~y~~Aie~a 538 (1163)
T COG1196 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG-LPGVYGPVAELIKVKEKYETALEAA 538 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhcc-CCCccchHHHhcCcChHHHHHHHHH
Confidence 211 2234444444555455555555555555544333 22222233322 4444 444444444443322 2
Q ss_pred ------------HHhhHHHHHhhhhhHHHHhH
Q 040943 362 ------------EQMHRDCSANLRAKEAEWSS 381 (950)
Q Consensus 362 ------------Eq~Hr~Cs~~LraKEaEW~~ 381 (950)
+.+=+.|..-||..-+-+-+
T Consensus 539 lG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~t 570 (1163)
T COG1196 539 LGNRLQAVVVENEEVAKKAIEFLKENKAGRAT 570 (1163)
T ss_pred cccccCCeeeCChHHHHHHHHHHhhcCCCccc
Confidence 23456677777765544433
No 24
>PRK01156 chromosome segregation protein; Provisional
Probab=96.86 E-value=2 Score=52.83 Aligned_cols=69 Identities=13% Similarity=0.259 Sum_probs=33.5
Q ss_pred hhHHHHhHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhh
Q 040943 471 SNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESD 539 (950)
Q Consensus 471 ~~aL~~aqaelaeerEkvAsL~rriEsld~~Eeq~~lMQkELd~yKEMLEeSSr~Ql~Lkeq~lq~E~d 539 (950)
..-+.....++..-...++.+...+..++..++....+..++.....-++.-....--|+++..++..+
T Consensus 642 ~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 710 (895)
T PRK01156 642 KILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444445444445555555555555555555544444444444455554444443
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.85 E-value=2.7 Score=54.07 Aligned_cols=121 Identities=21% Similarity=0.349 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHHHH----hhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhh-------hHHHHhh
Q 040943 193 FKHLEEAHEKLKDQFR----TCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALS-------HEESRRK 261 (950)
Q Consensus 193 f~hLeeah~kl~~qfr----~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLa-------hEEs~rK 261 (950)
....++++..+..+|+ .-..++..++..+..++..+.+.+++ +...+++..++.....++. .-.....
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKN-PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVE 493 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554 33345666677777788888888864 3344444444444444443 3333333
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhh-hhhHHHHHHHH
Q 040943 262 YLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLG-TKETFYKEMEY 318 (950)
Q Consensus 262 ~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~-~Ket~~kE~ey 318 (950)
.+..+.-+++..++.+-.....++..+..+..+ |+.|...|. .+.||+.=+..
T Consensus 494 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~----~~~l~~~L~p~~gSL~~fL~~ 547 (1201)
T PF12128_consen 494 ELQAEEQELRKERDQAEEELRQARRELEELRAQ----IAELQRQLDPQKGSLLEFLRK 547 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhCCCCCcHHHHHHh
Confidence 444445556666666666777777776666555 777776664 66777654433
No 26
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.78 E-value=2.7 Score=53.08 Aligned_cols=266 Identities=24% Similarity=0.290 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHH
Q 040943 4 IYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKES 83 (950)
Q Consensus 4 v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs 83 (950)
+-.++-.++++|-.|++++--|+ +||.++.++ |+.-.+.+.++.||+-.--++...++.+...+.+...-+|-
T Consensus 175 L~velAdle~kir~LrqElEEK~---enll~lr~e----Lddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer 247 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKF---ENLLRLRNE----LDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAER 247 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhc
Confidence 45788999999999999999999 566666554 46667788899999888888888888877777654433332
Q ss_pred HHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcch
Q 040943 84 IIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPK 163 (950)
Q Consensus 84 ~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~k 163 (950)
.= -+|+.--.+.-+|..-+++..+-|.-+-.---|+++.|.|++.
T Consensus 248 ~d---------------~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lra-------------------- 292 (1195)
T KOG4643|consen 248 PD---------------TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRA-------------------- 292 (1195)
T ss_pred CC---------------CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 11 2233223333344444444333333333333344444444332
Q ss_pred hhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhH---hHHhhhhhhhhh---hhhhhhh
Q 040943 164 KLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHER---STLLDAISSLQT---SLDSQTR 237 (950)
Q Consensus 164 e~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~er---s~LlDeI~sLq~---~LdSqtr 237 (950)
|.|- .-+|-++.++..+|-.- .-+-..+| ..|..++++|++ +||++-.
T Consensus 293 ----rse~-~tleseiiqlkqkl~dm---------------------~~erdtdr~kteeL~eEnstLq~q~eqL~~~~e 346 (1195)
T KOG4643|consen 293 ----RSEG-ATLESEIIQLKQKLDDM---------------------RSERDTDRHKTEELHEENSTLQVQKEQLDGQME 346 (1195)
T ss_pred ----cccc-CChHHHHHHHHHHHHHH---------------------HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 2222 23444444444433322 22333444 346667777764 2333322
Q ss_pred hhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHH
Q 040943 238 ISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEME 317 (950)
Q Consensus 238 ~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~e 317 (950)
...-+---=+.||-.+-| +-+.||+
T Consensus 347 llq~~se~~E~en~Sl~~-------------------------------e~eqLts------------------------ 371 (1195)
T KOG4643|consen 347 LLQIFSENEELENESLQV-------------------------------ENEQLTS------------------------ 371 (1195)
T ss_pred HhhhhhcchhhhhhhHHH-------------------------------HHHHhhh------------------------
Confidence 221110000123333333 3444554
Q ss_pred HHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhh
Q 040943 318 YQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSEL 397 (950)
Q Consensus 318 y~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L 397 (950)
-++-+++=+|+.+..-|-++|. +|+-.+++|--.|+.-|++.+-. .+.|++.|+....++
T Consensus 372 ~ralkllLEnrrlt~tleelqs---------ss~Ee~~SK~leleke~KnLs~k-----------~e~Leeri~ql~qq~ 431 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQS---------SSYEELISKHLELEKEHKNLSKK-----------HEILEERINQLLQQL 431 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhh---------hhHHHHHHHHHHHHHHhHhHhHH-----------HHHHHHHHHHHHHHH
Confidence 1346788889999999999995 37899999999999999997654 445567777777776
Q ss_pred hhHHHHHHHHHHHHh
Q 040943 398 ERKDAALKELKMELE 412 (950)
Q Consensus 398 ~sKd~~i~eLq~ELe 412 (950)
..=+-.-+-|+-|++
T Consensus 432 ~eled~~K~L~~E~e 446 (1195)
T KOG4643|consen 432 AELEDLEKKLQFELE 446 (1195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555555555554
No 27
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.76 E-value=0.0047 Score=73.94 Aligned_cols=197 Identities=25% Similarity=0.386 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHH
Q 040943 178 ENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEE 257 (950)
Q Consensus 178 E~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEE 257 (950)
.+..++..+++...+-.-+++-...+..++...+..|+.+...|-.+...+....+..+. .+..++.=....+.+=+
T Consensus 108 ~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~---~l~~~~~~l~~~~~~~e 184 (722)
T PF05557_consen 108 RNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEIS---SLKNELSELERQAENAE 184 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555444443333332222221111 11112211122334445
Q ss_pred HHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhh------chhHHHHHHhhhhhhhH---HHHHHHHH---HHHhHH
Q 040943 258 SRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQ------RDKEIAALRHSLGTKET---FYKEMEYQ---ATKLER 325 (950)
Q Consensus 258 s~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~------rd~eIa~LR~sL~~Ket---~~kE~ey~---~~kLEq 325 (950)
+.-+.++.++.+++..++.+.++++++-.++..|... .+..|..|..-++.-++ +.|.+..+ +..||.
T Consensus 185 ~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~ 264 (722)
T PF05557_consen 185 SQIQSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEK 264 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777888888877777777777777666332 34455544433322211 22333222 345666
Q ss_pred hhHHHHHhHHHHHHHHhhhcCccc----hHHHHHHHhHHHHHhhHHHHH------hhhhhHHHHhH
Q 040943 326 ENQELLMSLKELQEAQIQKAGSSS----SLAKLRNKLRSVEQMHRDCSA------NLRAKEAEWSS 381 (950)
Q Consensus 326 EN~el~~sLKElQEaqI~~agas~----sl~kLr~Klr~LEq~Hr~Cs~------~LraKEaEW~~ 381 (950)
+|..+..-|+-|... -+++- -...|++|+..+|.+...+.+ .|.++=..|.+
T Consensus 265 en~~l~~Elk~Lr~~----~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 265 ENRRLREELKHLRQS----QENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555532 11111 134567777777777766654 34444455544
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.65 E-value=2.3 Score=50.48 Aligned_cols=385 Identities=17% Similarity=0.249 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 040943 5 YEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESI 84 (950)
Q Consensus 5 ~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~ 84 (950)
...++.+.+.+.....++..=.+-++.|...+..+-..+.+.+-+-..+-..+.+++-..+.+-+..+.-=..+....+-
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~ 183 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQ 183 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666677777777777777777777777777777777665544333333333333334444
Q ss_pred HHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchh
Q 040943 85 IKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKK 164 (950)
Q Consensus 85 i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke 164 (950)
...|.++-|-+. |.+....++..+..+..-|+..-+++...++.
T Consensus 184 f~~l~~~Gd~~~-----------------------A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~------------- 227 (569)
T PRK04778 184 FVELTESGDYVE-----------------------AREILDQLEEELAALEQIMEEIPELLKELQTE------------- 227 (569)
T ss_pred HHHHhcCCCHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 455555555444 22222222333333333333333333222211
Q ss_pred hhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHH-HHhhhh--hh-----hHhHhHHhhhhhhhhhhhhhhh
Q 040943 165 LRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQ-FRTCKK--EW-----EHERSTLLDAISSLQTSLDSQT 236 (950)
Q Consensus 165 ~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~q-fr~skk--EW-----~~ers~LlDeI~sLq~~LdSqt 236 (950)
--.||..|...|+++..+ |.-... ++ .......+..|++| .||.+.
T Consensus 228 ------------------------~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~ 281 (569)
T PRK04778 228 ------------------------LPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAE 281 (569)
T ss_pred ------------------------hhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHH
Confidence 124666666666666652 110000 11 11233444556665 678888
Q ss_pred hhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhh---chhHHHHHHhhhhhhhHHH
Q 040943 237 RISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQ---RDKEIAALRHSLGTKETFY 313 (950)
Q Consensus 237 r~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~---rd~eIa~LR~sL~~Ket~~ 313 (950)
-..+++..++..+-..|.+|..-++..+-.+..+......+-.........|+.|... -++|+...|.
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~--------- 352 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQ--------- 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHH---------
Confidence 8999999999999999999999999999999888888888888888887777777543 2444444433
Q ss_pred HHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhH-------HHHHhh---HHHHHhhhhhHHHHhHhH
Q 040943 314 KEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLR-------SVEQMH---RDCSANLRAKEAEWSSQM 383 (950)
Q Consensus 314 kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr-------~LEq~H---r~Cs~~LraKEaEW~~Q~ 383 (950)
++.+-.++...++.+.+ .|.+...+ .+.++..+. .++.-| .+....||..|.+-+.++
T Consensus 353 ---------lekeL~~Le~~~~~~~~-~i~~~~~~--ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL 420 (569)
T PRK04778 353 ---------LEKQLESLEKQYDEITE-RIAEQEIA--YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL 420 (569)
T ss_pred ---------HHHHHHHHHHHHHHHHH-HHHcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443332 12222222 222222222 222222 123345555665555555
Q ss_pred HhhHHhhhhhh----------------hhhhhHHHHHHHHHHHHhhhhhHHH-HHhhhhHHHHHHHHHHh-hHHHHHHHH
Q 040943 384 QQMDAEMNGYR----------------SELERKDAALKELKMELEDYHSLTL-QLKMQNEEISVMLLELE-NDQEMLEKS 445 (950)
Q Consensus 384 eKL~~el~~~~----------------s~L~sKd~~i~eLq~ELe~c~s~~~-Ql~~qNeE~s~mllvl~-k~~E~le~S 445 (950)
.++...|.+++ ..+..=...|..|..+|.. ....| .+..+..++.-...-|. ...++....
T Consensus 421 ~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a 499 (569)
T PRK04778 421 ERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENA 499 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443 4455556777777777776 44433 33223344443333332 122222222
Q ss_pred HHHHhHHHHHHHHHhhhHHHHHhhhhhHHHHhH
Q 040943 446 LRCQRHLEEQAKQIESDSERKLGEVSNALDIAN 478 (950)
Q Consensus 446 ~r~Ql~lqeq~~q~E~~~~eqLee~~~aL~~aq 478 (950)
......++. -+-|+.....++.+|..|.
T Consensus 500 ~~lE~~Iqy-----~nRfr~~~~~V~~~f~~Ae 527 (569)
T PRK04778 500 TLTEQLIQY-----ANRYRSDNEEVAEALNEAE 527 (569)
T ss_pred HHHHHHHHH-----HhccCCCCHHHHHHHHHHH
Confidence 222222222 2445556666666666665
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.45 E-value=1.2 Score=51.36 Aligned_cols=218 Identities=15% Similarity=0.241 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhh---hchHHHHhhHHHhhHH
Q 040943 36 HNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLR---FDFNEKCRKLEEQNRV 112 (950)
Q Consensus 36 ~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~---~~~~ek~~k~e~e~r~ 112 (950)
+..-..+++++..++..+..++.+...++..+....+.+...... .+..+...-+.+. .........++++.-.
T Consensus 169 ~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~---~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGE---NIARKQNKYDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666666666666666666666666666666554432 1222222222221 1122233333333333
Q ss_pred HHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhh--hHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhH
Q 040943 113 LVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQ--KKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKK 190 (950)
Q Consensus 113 lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~e--kkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~ 190 (950)
+...+++..+...+.+.++...+..++.+.+.+.--+ ..|--........ +...+.+.+++.-.+
T Consensus 246 l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-------------~~~~~~l~d~i~~l~ 312 (562)
T PHA02562 246 LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-------------PDRITKIKDKLKELQ 312 (562)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-------------HHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444444433332 2444444443332 334444444555555
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhh
Q 040943 191 EQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEF 270 (950)
Q Consensus 191 Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~ 270 (950)
.+.+.|+++...+....+ .++.+.+-..++++.+.-|+..+..--.+++.+++++..+
T Consensus 313 ~~l~~l~~~i~~~~~~~~----------------------~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 313 HSLEKLDTAIDELEEIMD----------------------EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566665555444432 2222333334455555556666655556677778877777
Q ss_pred hhhhhhhhHHHHHHhHHHHHh
Q 040943 271 RTHYDNTFAEYQDAKSQLECL 291 (950)
Q Consensus 271 K~~~~nv~~e~~ears~ie~L 291 (950)
...+.++-.+..+...+++.+
T Consensus 371 ~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 371 QAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HhhhhchHHHHHHHHHHHHHH
Confidence 776555544444444444433
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.36 E-value=6.2 Score=52.20 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHH---hhhcchHHHHHHHHhhhHhHHHHHHHhhHHhhhHHhhhhcc
Q 040943 807 QEKSLSHSKHQAQKIEAELALKQREMKNLTNQLE---ENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGL 881 (950)
Q Consensus 807 ~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me---~k~r~se~~v~eLk~en~~l~~~~~~lssEr~~Ll~~~~gl 881 (950)
....++.+......++.-+.-.+.+|.+|+.++. ..+...+..|..+|..--..+.-+..=--||.=.=..+.++
T Consensus 1065 l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~~~~~~l~~~~~~~~ 1142 (1486)
T PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAYL 1142 (1486)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHhhhhcc
Confidence 3445555555566666666666777777777664 34445555555555554443333333333444333333333
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.25 E-value=0.78 Score=52.83 Aligned_cols=104 Identities=11% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHh
Q 040943 170 DMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC 249 (950)
Q Consensus 170 dm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mC 249 (950)
+.+..++.++..+..++.=.+.+..+++.+...++.++...-.+-..+...+++....++..++.-..-..++...+..+
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~ 253 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 44456677777777777777777777777777777777666666666667777777777666666666666666666666
Q ss_pred hHHhhhHHHHhhHHHHHHhhhhhh
Q 040943 250 NQALSHEESRRKYLEVQVSEFRTH 273 (950)
Q Consensus 250 nqaLahEEs~rK~lE~e~Se~K~~ 273 (950)
..+|..-+....-++..+..+...
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555554443
No 32
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.97 E-value=6.3 Score=48.63 Aligned_cols=11 Identities=9% Similarity=0.314 Sum_probs=4.6
Q ss_pred HhHHHHHHHHH
Q 040943 792 ELEDEISNVQQ 802 (950)
Q Consensus 792 ElE~ei~~~q~ 802 (950)
+|...|..|..
T Consensus 969 ~l~~~i~~lg~ 979 (1179)
T TIGR02168 969 EARRRLKRLEN 979 (1179)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 33
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.78 E-value=1.5 Score=46.39 Aligned_cols=180 Identities=22% Similarity=0.279 Sum_probs=97.1
Q ss_pred HHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhH---HHHHhhhhhhhhhhhh
Q 040943 74 LKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVF---KAEIEGLKGLLSASQK 150 (950)
Q Consensus 74 L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~---~~ei~~lk~~ls~~ek 150 (950)
|=+++++=+.-=++|-..|-+|. ..+...++.+..|..-+......-.+..|.++.+ +.|++.||..+.
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~----~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~---- 77 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQ----RSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAK---- 77 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 33333333333345555555554 3345566666666666666666666666666655 566666665544
Q ss_pred HhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhh
Q 040943 151 KCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQT 230 (950)
Q Consensus 151 kc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~ 230 (950)
.||++++++-.+-+--...=.||..-...|+++-.... .++..+-+.+-.|.+
T Consensus 78 -----------------------~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~----~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 78 -----------------------SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLL----AERDGLKKRSKELAT 130 (193)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HhhhhHHHHHHHHHH
Confidence 35566666666555554444555544444444322111 112222222222221
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhh
Q 040943 231 SLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKE 310 (950)
Q Consensus 231 ~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ke 310 (950)
-..+|+++++ .|+..-++-+.+.+.|..-|..|-..+.+=-
T Consensus 131 -------~~~~Lq~Ql~--------------------------------~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~ 171 (193)
T PF14662_consen 131 -------EKATLQRQLC--------------------------------EFESLICQRDAILSERTQQIEELKKTIEEYR 171 (193)
T ss_pred -------hhHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555 3333444455556666666777777777777
Q ss_pred HHHHHHHHHHHHhHHhh
Q 040943 311 TFYKEMEYQATKLEREN 327 (950)
Q Consensus 311 t~~kE~ey~~~kLEqEN 327 (950)
++.-|++-.+.|||+--
T Consensus 172 ~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 172 SITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77778888888888754
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.73 E-value=0.47 Score=52.39 Aligned_cols=143 Identities=23% Similarity=0.352 Sum_probs=77.4
Q ss_pred hhhhhhhHhHhHHhhhhh-hhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHH
Q 040943 209 TCKKEWEHERSTLLDAIS-SLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQ 287 (950)
Q Consensus 209 ~skkEW~~ers~LlDeI~-sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ 287 (950)
.||+.|-.=|.+++++|- .|+.+++.=..=...|...+..=+.. +-.+...+..+-.++...+..
T Consensus 134 ~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~--------------~~~l~~~~~~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 134 EAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDEL--------------LPKLRERKAELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 578889888999998775 44444332222112222222222222 233333444444444444444
Q ss_pred HHHhhhhchhHHHHHHhhhhhhhHHHH-------HHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcC---------ccchH
Q 040943 288 LECLTNQRDKEIAALRHSLGTKETFYK-------EMEYQATKLERENQELLMSLKELQEAQIQKAG---------SSSSL 351 (950)
Q Consensus 288 ie~Lt~~rd~eIa~LR~sL~~Ket~~k-------E~ey~~~kLEqEN~el~~sLKElQEaqI~~ag---------as~sl 351 (950)
...++.-.-.+++.+|..|..-.+-+. +++.+...+.+...++-....+++ ++|+.+. +..=+
T Consensus 200 ~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~-~eI~e~~~~~~~~r~~t~~Ev 278 (325)
T PF08317_consen 200 VEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL-AEIAEAEKIREECRGWTRSEV 278 (325)
T ss_pred HhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCHHHH
Confidence 444444444555555555554444444 555555555555555555555555 4555544 44558
Q ss_pred HHHHHHhHHHHHhhH
Q 040943 352 AKLRNKLRSVEQMHR 366 (950)
Q Consensus 352 ~kLr~Klr~LEq~Hr 366 (950)
..|+.+|+.||..|-
T Consensus 279 ~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 279 KRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999998884
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.66 E-value=3.7 Score=43.62 Aligned_cols=137 Identities=23% Similarity=0.272 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH------
Q 040943 2 ERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLK------ 75 (950)
Q Consensus 2 e~v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~------ 75 (950)
..+-.++|++...+..+...|...-.-++ .|-..+..+.+-+..-.+++..+..-+....
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~--------------~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~ 69 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAE--------------KAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEA 69 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556777777777777777665433332 3333444455554444444444443333333
Q ss_pred -hhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhh
Q 040943 76 -RSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVK 154 (950)
Q Consensus 76 -~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~e 154 (950)
..+.+-+...+.|...+. ..++|+..++..-......++++..+..+-..++.+.-..+++...-+...+.+|.+
T Consensus 70 e~~~de~er~~k~lE~r~~----~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~e 145 (237)
T PF00261_consen 70 EKRADESERARKVLENREQ----SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKE 145 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHH----HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Confidence 333333444444443332 357888899999999999999999999999999998888888877766666666655
Q ss_pred hh
Q 040943 155 AE 156 (950)
Q Consensus 155 ae 156 (950)
++
T Consensus 146 LE 147 (237)
T PF00261_consen 146 LE 147 (237)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 36
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.56 E-value=7.1 Score=46.21 Aligned_cols=292 Identities=23% Similarity=0.292 Sum_probs=150.6
Q ss_pred HHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhh
Q 040943 74 LKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCV 153 (950)
Q Consensus 74 L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~ 153 (950)
|..-=..-.+++.-|.++-+.|. ..+..|...-+++-.-..--+++.........++..+..||.++++.|-...--+.
T Consensus 118 le~~~~q~~~~~~eL~~~k~EL~-~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 118 LESAREQYASAVAELDSVKQELE-KLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455666666666664 44444444444444444445666667778888999999999999999999999999
Q ss_pred hhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhh
Q 040943 154 KAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLD 233 (950)
Q Consensus 154 eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~Ld 233 (950)
+|++.... -+..++.-...++.+....+..+.+.+.+| ..+..|+..|+
T Consensus 197 eAeee~~~--~~~~~~~~~~~~~~~leeae~~l~~L~~e~-----------------------------~~~k~Le~kL~ 245 (522)
T PF05701_consen 197 EAEEERIE--IAAEREQDAEEWEKELEEAEEELEELKEEL-----------------------------EAAKDLESKLA 245 (522)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHH
Confidence 98864222 122333333333333333333333333332 22334445555
Q ss_pred hhhhhhhhhHHHHHHhhH-HhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHH
Q 040943 234 SQTRISGDLQNRLQLCNQ-ALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETF 312 (950)
Q Consensus 234 Sqtr~~edlq~rl~mCnq-aLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~ 312 (950)
.-..-..+|+..|.-+.. -+..+. -....++.++..++.+-.+..+++..|+..+. |+..||.+..+ +
T Consensus 246 ~a~~~l~~Lq~El~~~~~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~----E~~~L~~~ves---L 314 (522)
T PF05701_consen 246 EASAELESLQAELEAAKESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAKE----EASSLRASVES---L 314 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---H
Confidence 544455555555543332 111111 22233455666677777777777777766543 46666665532 2
Q ss_pred HHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHH----HHhhHHHHHhhhhhHHHHhHhHHhhHH
Q 040943 313 YKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSV----EQMHRDCSANLRAKEAEWSSQMQQMDA 388 (950)
Q Consensus 313 ~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~L----Eq~Hr~Cs~~LraKEaEW~~Q~eKL~~ 388 (950)
-.|+ +....++.. +++ ...-+++....|..++..+ +-++-.. ...+..=..-...+.+++.
T Consensus 315 ~~EL-------e~~K~el~~----lke---~e~~a~~~v~~L~~eL~~~r~eLea~~~~e-~~~k~~~~~l~~~Lqql~~ 379 (522)
T PF05701_consen 315 RSEL-------EKEKEELER----LKE---REKEASSEVSSLEAELNKTRSELEAAKAEE-EKAKEAMSELPKALQQLSS 379 (522)
T ss_pred HHHH-------HHHHHHHHH----HHH---HHHHHHhHHhhHHHHHHHHHHHHHHHHhhh-cchhhhHHHHHHHHHHHHH
Confidence 2222 222222222 221 2222233333333333222 1112222 1111222344556677777
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhhhhH--HHHHhh
Q 040943 389 EMNGYRSELERKDAALKELKMELEDYHSL--TLQLKM 423 (950)
Q Consensus 389 el~~~~s~L~sKd~~i~eLq~ELe~c~s~--~~Ql~~ 423 (950)
+.+..+.....-...+..++.+.+.-... +++.++
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL 416 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666777777777765555 444433
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.45 E-value=8.3 Score=46.33 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=50.4
Q ss_pred hhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHH----HH
Q 040943 239 SGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETF----YK 314 (950)
Q Consensus 239 ~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~----~k 314 (950)
+..+|.+++.|-+....=......|+.++..++...+.+-++....+...+.|..+ ++++..-...+...-.. +.
T Consensus 138 a~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~-~kel~~~~e~l~~E~~~L~~q~~ 216 (546)
T PF07888_consen 138 AQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQ-QKELTESSEELKEERESLKEQLA 216 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777666555555555666666666666666666666666665555554 33333333222221111 23
Q ss_pred HHHHHHHHhHHhhHHHHHhHH
Q 040943 315 EMEYQATKLERENQELLMSLK 335 (950)
Q Consensus 315 E~ey~~~kLEqEN~el~~sLK 335 (950)
++.-++..||+++..|....+
T Consensus 217 e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544443
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.21 E-value=14 Score=47.41 Aligned_cols=171 Identities=18% Similarity=0.297 Sum_probs=103.2
Q ss_pred hhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhh-------
Q 040943 117 LDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWK------- 189 (950)
Q Consensus 117 Lde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk------- 189 (950)
|+....-.+.-...+..+++.|.-..+=++..+|+|.+++.....+..+ ..+.+-.+++..++-|.
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~-------e~~~~~l~~Lk~k~~W~~V~~~~~ 281 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQL-------EDLKENLEQLKAKMAWAWVNEVER 281 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666677777777777777777777777666554433 22334445556666664
Q ss_pred -----HHHhhhHHHHHHHHHHHHHhhhhhhhHhHh----------HHhh-------hhhhhhhhhhhhhhhhhhhHHHHH
Q 040943 190 -----KEQFKHLEEAHEKLKDQFRTCKKEWEHERS----------TLLD-------AISSLQTSLDSQTRISGDLQNRLQ 247 (950)
Q Consensus 190 -----~Eqf~hLeeah~kl~~qfr~skkEW~~ers----------~LlD-------eI~sLq~~LdSqtr~~edlq~rl~ 247 (950)
.+.|+|.++.+.+|++..+..--.-+.-|. .+.| +|-.+...+|-..|...+++....
T Consensus 282 ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~ 361 (1074)
T KOG0250|consen 282 QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR 361 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999998888765422222222221 2222 455666667777777777777776
Q ss_pred HhhHHhhhHHHHhhHHHHHHhhhhhhh-hhhhHHHHHHhHHHHHhhhh
Q 040943 248 LCNQALSHEESRRKYLEVQVSEFRTHY-DNTFAEYQDAKSQLECLTNQ 294 (950)
Q Consensus 248 mCnqaLahEEs~rK~lE~e~Se~K~~~-~nv~~e~~ears~ie~Lt~~ 294 (950)
+|-.-.-.=-++..+++-+|..++.++ +++=++-.+..-.++.|+.+
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~e 409 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKE 409 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 665555555566667777777777777 55555555555555555544
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.92 E-value=2.8 Score=51.37 Aligned_cols=101 Identities=35% Similarity=0.460 Sum_probs=67.8
Q ss_pred HhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhh---HhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHh
Q 040943 173 LKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWE---HERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC 249 (950)
Q Consensus 173 ~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~---~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mC 249 (950)
..||.|..+++..||+|.|+-.-||.-...+++.-+.+.++-+ +.-+++=|.=..|+.+|-..|||=-|
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKld-------- 619 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLD-------- 619 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------
Confidence 7899999999999999999999999887766664333333222 11123333444555666666665443
Q ss_pred hHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhh---hchhHHHHHHhhhhh
Q 040943 250 NQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTN---QRDKEIAALRHSLGT 308 (950)
Q Consensus 250 nqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~---~rd~eIa~LR~sL~~ 308 (950)
+|+-+-|||-|||-+.. +||+||.+|+.-++.
T Consensus 620 ---------------------------LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 620 ---------------------------LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888776554 478888888765544
No 40
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.28 E-value=0.032 Score=67.08 Aligned_cols=151 Identities=23% Similarity=0.306 Sum_probs=0.0
Q ss_pred hchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhh---hhHHHhhhHHHH
Q 040943 123 KNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLK---WKKEQFKHLEEA 199 (950)
Q Consensus 123 ~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLk---wk~Eqf~hLeea 199 (950)
+..++..++...++|+.++...+...+-+|...++. ..+++.+.+-+....++.+.++|.+. -+.+++.-||-+
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~e---i~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ 316 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKE---IDELRQENEELQAEAREARALRDELDELREKADRADKLENE 316 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 456677788888888888877777777777777654 47788888888889999999998864 445589999999
Q ss_pred HHHHHHHHHhhh------hhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHH-------hhHHhhhHHHHhhHHHHH
Q 040943 200 HEKLKDQFRTCK------KEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQL-------CNQALSHEESRRKYLEVQ 266 (950)
Q Consensus 200 h~kl~~qfr~sk------kEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~m-------CnqaLahEEs~rK~lE~e 266 (950)
.+++++-+.... ++=+..-..+++.+..|...| +-+..++.+++. +.+.+..+..+...++.+
T Consensus 317 ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel----~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e 392 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL----KKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFE 392 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887544332 233334455666665555444 333344444443 445566666666777777
Q ss_pred HhhhhhhhhhhhHH
Q 040943 267 VSEFRTHYDNTFAE 280 (950)
Q Consensus 267 ~Se~K~~~~nv~~e 280 (950)
+..++..+..+-.+
T Consensus 393 ~~~L~ek~~~l~~e 406 (713)
T PF05622_consen 393 NKQLEEKLEALEEE 406 (713)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 76666655544333
No 41
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.27 E-value=19 Score=44.54 Aligned_cols=511 Identities=23% Similarity=0.269 Sum_probs=251.7
Q ss_pred HHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhch
Q 040943 20 ADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDF 99 (950)
Q Consensus 20 ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~ 99 (950)
.++++|-.-+..=++--..|---|||-.|..|++.--+. |+|..-+ .|..+-.+.||||--=..-=+..
T Consensus 99 sd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLe---e~i~en~--------dL~k~nnaTR~lCNlLKeT~~rs 167 (786)
T PF05483_consen 99 SDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLE---EEIQENK--------DLRKENNATRHLCNLLKETCQRS 167 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH---HHHhhHH--------HHHHhhhHHHHHHHHHHHHHHHH
Confidence 466666666655566666666677777777777754443 3343322 25567788999998755555567
Q ss_pred HHHHhhHHHhhHH---HHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhH
Q 040943 100 NEKCRKLEEQNRV---LVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLE 176 (950)
Q Consensus 100 ~ek~~k~e~e~r~---lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klE 176 (950)
++|..++|-+.-+ +.--+-+... .=|....+++ +-
T Consensus 168 aEK~~~yE~EREET~qly~~l~~nie-------------kMi~aFEeLR-----------------------------~q 205 (786)
T PF05483_consen 168 AEKMKKYEYEREETRQLYMDLNENIE-------------KMIAAFEELR-----------------------------VQ 205 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH-------------HHHHHHHHHH-----------------------------HH
Confidence 7888888865432 2222211111 1111111111 11
Q ss_pred HhhHHHHH--HhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhh
Q 040943 177 DENSKFEN--QLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALS 254 (950)
Q Consensus 177 eE~~~~e~--qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLa 254 (950)
.||...+= +||..-++|-||++-|.+=.. .-=.+++-|++.++-+--...|+.-.|+-+..-.+
T Consensus 206 AEn~r~EM~fKlKE~~~k~~~leeey~~E~n--------------~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~ 271 (786)
T PF05483_consen 206 AENDRQEMHFKLKEDYEKFEDLEEEYKKEVN--------------DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCN 271 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 23333333 466667899999987765332 22246778888888888877777777764333333
Q ss_pred hHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhH
Q 040943 255 HEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSL 334 (950)
Q Consensus 255 hEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sL 334 (950)
+=+-..+..--=+++....-+..-++..+++. +|..+..+..++-.++......+.|=+++--+.+
T Consensus 272 qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~--------------slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~ 337 (786)
T PF05483_consen 272 QLEEKTKEQHENLKESNEEQEHLLQELEDIKQ--------------SLQESESTQKALEEDLQQATKTLIQLTEEKEAQM 337 (786)
T ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 32333333333344444444444444444432 3444555556665566666666666666666666
Q ss_pred HHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhh-------hhHHHHHHHH
Q 040943 335 KELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSEL-------ERKDAALKEL 407 (950)
Q Consensus 335 KElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L-------~sKd~~i~eL 407 (950)
-++-.|.++-|+-.- -|....-+|...-+ +..-|.+.. ..|+.-++.||..--+.| ..|+..+.+|
T Consensus 338 Ee~nk~k~~~s~~v~---e~qtti~~L~~lL~--~Eqqr~~~~--ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL 410 (786)
T PF05483_consen 338 EELNKAKAQHSFVVT---ELQTTICNLKELLT--TEQQRLKKN--EDQLKILTMELQKKSSELEEMTKQKNNKEVELEEL 410 (786)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHh--HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHH
Confidence 666666555544322 22222222221111 111222221 123333333333322222 2334444444
Q ss_pred HHHHhhhh---hHHHHH-----hhhhHHHH--HHHHHHh----hHHHHHHHHHHHHhHHHHHHHHHhhhHH------HHH
Q 040943 408 KMELEDYH---SLTLQL-----KMQNEEIS--VMLLELE----NDQEMLEKSLRCQRHLEEQAKQIESDSE------RKL 467 (950)
Q Consensus 408 q~ELe~c~---s~~~Ql-----~~qNeE~s--~mllvl~----k~~E~le~S~r~Ql~lqeq~~q~E~~~~------eqL 467 (950)
...|..-. ..--|+ .+|+-|.. -.+.+.. -+..-+....+..-+.-.|+.++..+|. ..|
T Consensus 411 ~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~EL 490 (786)
T PF05483_consen 411 KKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTEL 490 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444311 110011 12222222 2233333 3555566666777778888888888774 356
Q ss_pred hhhhhHHHHhHHHHHHHHHhhhhhh-HhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhHHHHHH
Q 040943 468 GEVSNALDIANLELAKEREKTASLS-EVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQE 546 (950)
Q Consensus 468 ee~~~aL~~aqaelaeerEkvAsL~-rriEsld~~Eeq~~lMQkELd~yKEMLEeSSr~Ql~Lkeq~lq~E~dlKekL~e 546 (950)
-..|..|...+..++.+...+|.=. ..-+.+.-...+-..|=++++.+ ++. ..| |...+-.+-..++.+-.+
T Consensus 491 t~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~L----ee~-~~~--Lrneles~~eel~~k~~E 563 (786)
T PF05483_consen 491 TVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENL----EET-NTQ--LRNELESVKEELKQKGEE 563 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHH--HHHHHHHHHHHHHHHHHH
Confidence 6778888888888988887766533 33334444444445555555442 222 111 122222222222222222
Q ss_pred HHhHHhhhhHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhh
Q 040943 547 ATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDS 626 (950)
Q Consensus 547 ~~daLD~AnsELaek~~E~s~~Efel~~wKs~~e~LK~~leEn~~lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~ 626 (950)
|-..||.-.-. ..-++|+...-..-+..|.+- ...+|+.++... =+.+.+.+++..|...+---+.
T Consensus 564 v~~kl~ksEen-------~r~~e~e~~~k~kq~k~lenk---~~~LrKqvEnk~----K~ieeLqqeNk~LKKk~~aE~k 629 (786)
T PF05483_consen 564 VKCKLDKSEEN-------ARSIECEILKKEKQMKILENK---CNNLRKQVENKN----KNIEELQQENKALKKKITAESK 629 (786)
T ss_pred HHHHhhhHHHh-------hHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111 122445544444444444322 234566555442 1223366666666655554444
Q ss_pred hhHHHHHHHHHHH
Q 040943 627 RISKFQQQILSLE 639 (950)
Q Consensus 627 ~i~~lq~qi~~lE 639 (950)
.++.+.-+|-.++
T Consensus 630 q~~~~eikVn~L~ 642 (786)
T PF05483_consen 630 QSNVYEIKVNKLQ 642 (786)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 42
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.04 E-value=10 Score=42.55 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=94.1
Q ss_pred hhhhhhhHhHhHHhhhhh-hhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhh----hHHHHH
Q 040943 209 TCKKEWEHERSTLLDAIS-SLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNT----FAEYQD 283 (950)
Q Consensus 209 ~skkEW~~ers~LlDeI~-sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv----~~e~~e 283 (950)
.||+.|-.=|++|+++|- .|..+++.=..=..-|-..+..=+..+.-=..+..-|..++..++..=..+ -++-..
T Consensus 129 ~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~ 208 (312)
T smart00787 129 EAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDR 208 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHH
Confidence 588899888999988764 444444332222222444444444555444455555666666655433222 123334
Q ss_pred HhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHH-hhhcCccchHHHHHHHhHHHH
Q 040943 284 AKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQ-IQKAGSSSSLAKLRNKLRSVE 362 (950)
Q Consensus 284 ars~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaq-I~~agas~sl~kLr~Klr~LE 362 (950)
+|..|..+ +.+|...|+.+..+..=+.++.-.+......-.+++..+.+++--- ....-+.+=+..|+.+++.||
T Consensus 209 lk~~l~~~----~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 209 AKEKLKKL----LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 44333333 6678888888888887777777777777777777777666665311 123455666899999999999
Q ss_pred Hhh
Q 040943 363 QMH 365 (950)
Q Consensus 363 q~H 365 (950)
..|
T Consensus 285 ~l~ 287 (312)
T smart00787 285 SLT 287 (312)
T ss_pred HHh
Confidence 887
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=21 Score=44.18 Aligned_cols=286 Identities=17% Similarity=0.188 Sum_probs=166.2
Q ss_pred hHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHH
Q 040943 105 KLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFEN 184 (950)
Q Consensus 105 k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~ 184 (950)
-.-.+.|.|.+.+-+++....++....+.....+-.+++..++..-.|.- .-.++..|...++..-.
T Consensus 262 ~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~-------------~~~~~e~l~~~~~~~~~ 328 (698)
T KOG0978|consen 262 SINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLES-------------KSRDLESLLDKIQDLIS 328 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccc-------------hhHHHHHHHHHHHHHHH
Confidence 34455666777777777766666666666666777777777776666554 34556667777777777
Q ss_pred HhhhhHHHhhhHHHH-HHHHHHHHHhhhhhhhHhH--hHHhhhhhh-hhhhhhhhhhhhhhhHHH--------HH-HhhH
Q 040943 185 QLKWKKEQFKHLEEA-HEKLKDQFRTCKKEWEHER--STLLDAISS-LQTSLDSQTRISGDLQNR--------LQ-LCNQ 251 (950)
Q Consensus 185 qLkwk~Eqf~hLeea-h~kl~~qfr~skkEW~~er--s~LlDeI~s-Lq~~LdSqtr~~edlq~r--------l~-mCnq 251 (950)
++.-.+..|+....+ +++++.-.+...++...+| .+.-+++.. +...||.---.+...... ++ .|++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~ 408 (698)
T KOG0978|consen 329 QEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQR 408 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence 777777677765554 8888888888877877765 333333332 333333222222111110 00 2222
Q ss_pred Hhh----------------------hHHHHhhHHHHHHhhhh---hhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhh
Q 040943 252 ALS----------------------HEESRRKYLEVQVSEFR---THYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSL 306 (950)
Q Consensus 252 aLa----------------------hEEs~rK~lE~e~Se~K---~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL 306 (950)
..+ ...+..+.|...+-+|+ +--.-+.+-|+|--+++ ..|=-.+
T Consensus 409 l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn-----------~kL~~el 477 (698)
T KOG0978|consen 409 LKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQN-----------QKLLQEL 477 (698)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 222 22222222222223333 12223344455544444 4444457
Q ss_pred hhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhh
Q 040943 307 GTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQM 386 (950)
Q Consensus 307 ~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL 386 (950)
.+++-++..|=|...+.=|.+.-|+..+-.+-+ +|+..++ +..++--+.+.||.-=+-|+++.....++-. .+
T Consensus 478 ~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~-~i~~l~~--~~~~~~~~i~~leeq~~~lt~~~~~l~~el~----~~ 550 (698)
T KOG0978|consen 478 REKDDKNFKLMSERIKANQKHKLLREEKSKLEE-QILTLKA--SVDKLELKIGKLEEQERGLTSNESKLIKELT----TL 550 (698)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH----HH
Confidence 788888888888888887777777766665553 4444444 4566677788888777888888887775533 33
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHH
Q 040943 387 DAEMNGYRSELERKDAALKELKMELEDYHSLTLQL 421 (950)
Q Consensus 387 ~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql 421 (950)
+.=|..+.....-=.+....||.+++.|+.-.-|+
T Consensus 551 ~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 551 TQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444556677777777777665444
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.90 E-value=21 Score=44.16 Aligned_cols=188 Identities=22% Similarity=0.334 Sum_probs=103.0
Q ss_pred hhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHH
Q 040943 277 TFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRN 356 (950)
Q Consensus 277 v~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~ 356 (950)
.--+++...+.+-+|+..|-.|-..+ .+=|-=++|-....+.||....+-+..=++-.++ -..+.+....
T Consensus 465 lr~ene~Lq~Kl~~L~~aRq~DKq~l----~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~-aar~~~~~~~----- 534 (697)
T PF09726_consen 465 LRQENEQLQNKLQNLVQARQQDKQSL----QQLEKRLAEERRQRASLEKQLQEERKARKEEEEK-AARALAQAQA----- 534 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hhhccccchh-----
Confidence 33477788888888888888774333 3333336677777777888877777655543332 1111111100
Q ss_pred HhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHH---HH
Q 040943 357 KLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVM---LL 433 (950)
Q Consensus 357 Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql~~qNeE~s~m---ll 433 (950)
+.-.|++.+|.+..+| ..|+..++-.|-.|+..+..|..++..-+.-. +--+.++.++ |.
T Consensus 535 -------~r~e~~e~~r~r~~~l-------E~E~~~lr~elk~kee~~~~~e~~~~~lr~~~---~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 535 -------TRQECAESCRQRRRQL-------ESELKKLRRELKQKEEQIRELESELQELRKYE---KESEKDTEVLMSALS 597 (697)
T ss_pred -------ccchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHH
Confidence 2338999888887554 46777777788899999999988884211100 0001123322 33
Q ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhh
Q 040943 434 ELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASL 491 (950)
Q Consensus 434 vl~k~~E~le~S~r~Ql~lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL 491 (950)
.+..-...|+.|...+..+|--.-..-.+-+.||+...+.|..=-.||.+=..|||.+
T Consensus 598 amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 598 AMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333334445555555555544444444444444443
No 45
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.87 E-value=0.13 Score=62.05 Aligned_cols=283 Identities=22% Similarity=0.308 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhHhhhHH--HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhh
Q 040943 1 MERIYEELDEIKAENEKLRADCKSKSELCGNLK--KAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSL 78 (950)
Q Consensus 1 Me~v~eEldeakaeiEkL~ae~r~K~~~~d~Lk--k~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L 78 (950)
|+.+..++.++..++..|..++..=+.++.+.- -..++. +++ .|..+..-+-.|...+
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~-------------l~~-------~l~~lq~~~~~L~ek~ 359 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPED-------------LAR-------ALVQLQQENASLTEKL 359 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH-------------HHH-------HHHHHHHHHHHHHHHH
Confidence 455667777777777777777665443333210 011111 111 1222222223333333
Q ss_pred hhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhh
Q 040943 79 TEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESE 158 (950)
Q Consensus 79 ~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~ 158 (950)
..-.+-++.+-.+++.|...+ ..+..+...+-.++......+.-+|++.-....|+.+||.+|..-+..-.-....
T Consensus 360 g~~~~~~~~l~~~~~~Le~e~----~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~ 435 (722)
T PF05557_consen 360 GSLQSELRELEEEIQELEQEK----EQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPS 435 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc
Confidence 444444455555555454333 2344455555556666667777889999999999999999999977654444444
Q ss_pred hhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHh-H--hHHhhhhhhhhhhhhhh
Q 040943 159 AKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHE-R--STLLDAISSLQTSLDSQ 235 (950)
Q Consensus 159 a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~e-r--s~LlDeI~sLq~~LdSq 235 (950)
....+.+....||+..+...+..++..|++..+........-..+...+...+..-... + +.+-+.+..|+..+++=
T Consensus 436 ~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~L 515 (722)
T PF05557_consen 436 EQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEEL 515 (722)
T ss_dssp ----------------------------------------------------------HHCCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHH
Confidence 44567777788999999998888888887776665555544444444443333222111 1 22223333333333222
Q ss_pred hhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHH
Q 040943 236 TRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKE 315 (950)
Q Consensus 236 tr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE 315 (950)
.+-...|+ .....||.++..+ ++-+.|...+.. |=.||+....+..+++
T Consensus 516 e~e~~~L~--------------~~~~~Le~~l~~~-----~L~g~~~~~~tr-----------VL~lr~NP~~~~~~~k- 564 (722)
T PF05557_consen 516 ERENERLR--------------QELEELESELEKL-----TLQGEFNPSKTR-----------VLHLRDNPTSKAEQIK- 564 (722)
T ss_dssp HHHHHHHH--------------HHHHHHHHHHHHH-----CCCT--BTTTEE-----------EEEESS-HHHHHHHHH-
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHh-----hhccccCCCCce-----------eeeeCCCcHHHHHHHH-
Confidence 22222222 2222333333210 000122222222 3344555555555555
Q ss_pred HHHHHHHhHHhhHHHHHhHHHHHH
Q 040943 316 MEYQATKLERENQELLMSLKELQE 339 (950)
Q Consensus 316 ~ey~~~kLEqEN~el~~sLKElQE 339 (950)
.-.+..|-.||++|+..|+.+.+
T Consensus 565 -~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 565 -KSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHhccc
Confidence 34568899999999999988864
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.82 E-value=20 Score=43.36 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=79.0
Q ss_pred hhhhhhhhhHHHHhHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHH
Q 040943 744 FNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEA 823 (950)
Q Consensus 744 f~~sl~sfs~~laEkq~Ei~~~~~a~eki~~ae~La~leieeK~mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~ea 823 (950)
++..+.+.+.++.+.+.+-.-+.++ -..+|+. |+++.-..-+++.++..+..+-.+..+.-..+. .+++++.
T Consensus 423 l~el~~ei~~~~~~~~~~~~tLq~~------~~~~~~~-i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~-~k~~~E~ 494 (581)
T KOG0995|consen 423 LKELLDEISEELHEAENELETLQEH------FSNKAST-IEEKIQILGEIELELKKAESKYELKKEEAEEEW-KKCRKEI 494 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3344457777777777776666666 3333332 556666666666666666555444444333322 2444444
Q ss_pred HHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHHHHHhhHHhhhHHhhhhccccccccc
Q 040943 824 ELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKF 888 (950)
Q Consensus 824 Em~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~~~~lssEr~~Ll~~~~gl~d~i~~~ 888 (950)
+....++..+.--|.+.+-..+..|+....+..-++.+.+ -+|.++-..|.++.|-|..|
T Consensus 495 --e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~---eer~ki~~ql~~~i~~i~~~ 554 (581)
T KOG0995|consen 495 --EKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATGE---EERQKIAKQLFAVIDQISDF 554 (581)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556678888889999999999999988854 45555555555555544443
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.75 E-value=11 Score=40.10 Aligned_cols=215 Identities=21% Similarity=0.321 Sum_probs=127.9
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHh--H-hHHhhhhhhhhhhhhhhhhhhhhhHHH-------HH-Hh
Q 040943 181 KFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHE--R-STLLDAISSLQTSLDSQTRISGDLQNR-------LQ-LC 249 (950)
Q Consensus 181 ~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~e--r-s~LlDeI~sLq~~LdSqtr~~edlq~r-------l~-mC 249 (950)
.+++.+.-..+.+.+++..++...+.+..+..++..= | ..|=+.+.....+|+..+.-++.++.+ +. +.
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554444444444321 1 222233333344444433333333333 33 33
Q ss_pred hHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHH
Q 040943 250 NQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQE 329 (950)
Q Consensus 250 nqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~e 329 (950)
|. ...-+.|=..||.++.+.+..++.+...|.++...+..+... |..=+.=+.-.+-++..||.+...
T Consensus 85 ~r-~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~-----------Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 85 NR-EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQE-----------LERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhchhHHHHHHHHHH
Confidence 32 344466777888899999999999999999997776655433 333333345567778888888888
Q ss_pred HHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHH
Q 040943 330 LLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKM 409 (950)
Q Consensus 330 l~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ 409 (950)
+..+||.|+- .+..++.-...+-++++.|.+--+. .--|+-.|+ -.+.+|...|+.+--.|..-....+.++.
T Consensus 153 ~~~~lk~lE~---~~~~~~~re~~~e~~i~~L~~~lke--aE~Rae~aE--~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 153 VGNNLKSLEA---SEEKASEREDEYEEKIRDLEEKLKE--AENRAEFAE--RRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh---hhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988874 3444455556667777777443333 344555555 33667888888888888777777777777
Q ss_pred HHhhh
Q 040943 410 ELEDY 414 (950)
Q Consensus 410 ELe~c 414 (950)
+|...
T Consensus 226 eld~~ 230 (237)
T PF00261_consen 226 ELDQT 230 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 48
>PRK10869 recombination and repair protein; Provisional
Probab=93.08 E-value=18 Score=43.25 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=45.8
Q ss_pred hhHHhhhHHHHhhHHHHH--HhhhhhhhhhhhHHHHHHhHHHHHhhhh---chhHHHHHHhhhh
Q 040943 249 CNQALSHEESRRKYLEVQ--VSEFRTHYDNTFAEYQDAKSQLECLTNQ---RDKEIAALRHSLG 307 (950)
Q Consensus 249 CnqaLahEEs~rK~lE~e--~Se~K~~~~nv~~e~~ears~ie~Lt~~---rd~eIa~LR~sL~ 307 (950)
-+|.|.....++.+|..= ...++..|..+|.+|.+++.+++.|... +..+++-|++-+.
T Consensus 132 ~~~~ll~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~ 195 (553)
T PRK10869 132 AHQLLLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLK 195 (553)
T ss_pred hHHHhcCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 367899999999999852 3579999999999999999999998665 3445555555443
No 49
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.93 E-value=5.2 Score=39.09 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHH
Q 040943 6 EELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESII 85 (950)
Q Consensus 6 eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i 85 (950)
.++..+.+++..+......=..-+..++.....|....++|..+-++ |+..-++.|.. ...++..++.-.+-|
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~---El~~Ha~~~~~----L~~lr~e~~~~~~~~ 75 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER---ELVKHAEDIKE----LQQLREELQELQQEI 75 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHH----HHHHHHHHHHHHHHH
Confidence 46777788888887777777777788888888888888888876554 44444555543 334555666777888
Q ss_pred HHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHh
Q 040943 86 KCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIE 139 (950)
Q Consensus 86 ~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~ 139 (950)
..|.+.-+..+......-..|+.++..|.--++++..+..|+..|...+-.=|+
T Consensus 76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 76 NELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999999999877655544
No 50
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.81 E-value=19 Score=42.82 Aligned_cols=101 Identities=23% Similarity=0.337 Sum_probs=74.2
Q ss_pred hhHHhhhHHHHhhHHHH--HHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHh
Q 040943 249 CNQALSHEESRRKYLEV--QVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERE 326 (950)
Q Consensus 249 CnqaLahEEs~rK~lE~--e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqE 326 (950)
-++.|.....++.+|.. .+..++..|..+|.+|.+++..+..+... ...++++
T Consensus 136 ~~~~l~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-------------------------~~~~~~e 190 (563)
T TIGR00634 136 DQQLLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQK-------------------------EQELAQR 190 (563)
T ss_pred HHHHhcCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------hHHHHHH
Confidence 47888899999999984 34567888888888888887777766554 3455666
Q ss_pred hHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhh
Q 040943 327 NQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAK 375 (950)
Q Consensus 327 N~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraK 375 (950)
...+.-.|.|+..+.++ .|---.|..-+++|.+-|.....|..-+-.-
T Consensus 191 ld~L~~ql~ELe~~~l~-~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 191 LDFLQFQLEELEEADLQ-PGEDEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHHhCCcC-CCcHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 77777778888888774 5555557777777777777777777665544
No 51
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.14 E-value=49 Score=43.24 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhh
Q 040943 238 ISGDLQNRLQLCNQALSHEESRRKYLEVQVSE 269 (950)
Q Consensus 238 ~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se 269 (950)
..+.+.+|+..-|.-.+.-+.|.|+.+-+.-.
T Consensus 268 ~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~ 299 (1293)
T KOG0996|consen 268 PIEELMRRVERLNEDRSEKENRVKLVEKEKKA 299 (1293)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44556777776666666666777777765543
No 52
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.10 E-value=41 Score=42.29 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 040943 4 IYEELDEIKAENEKLRADCK 23 (950)
Q Consensus 4 v~eEldeakaeiEkL~ae~r 23 (950)
+.+-..+++..++.|...+.
T Consensus 176 l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 176 LKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888887777
No 53
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.64 E-value=36 Score=40.76 Aligned_cols=276 Identities=22% Similarity=0.293 Sum_probs=145.2
Q ss_pred hhhchHHHHhhHHHhhHHHH-HHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHH
Q 040943 95 LRFDFNEKCRKLEEQNRVLV-LALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLL 173 (950)
Q Consensus 95 L~~~~~ek~~k~e~e~r~lv-laLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~ 173 (950)
+-+.+..+|..|...--.++ ..+-+......+-|..+..++ =.+|.+.+...++++.
T Consensus 54 l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~r----------------------f~ka~~~i~~~~~~l~ 111 (560)
T PF06160_consen 54 LTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYR----------------------FKKAKQAIKEIEEQLD 111 (560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc----------------------HHHHHHHHHHHHHHHH
Confidence 66788889999999888888 456666655555555554332 1123334444555555
Q ss_pred hhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHh
Q 040943 174 KLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQAL 253 (950)
Q Consensus 174 klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaL 253 (950)
.+|+....+.+.|.-..++=.-=-.+...|++.|+..+|.--..+...=+.+..|...| .+
T Consensus 112 ~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L-------~~------------ 172 (560)
T PF06160_consen 112 EIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQL-------EN------------ 172 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHH-------HH------------
Confidence 55555555555544222221111222334444555554433333333222333333222 22
Q ss_pred hhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHh
Q 040943 254 SHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMS 333 (950)
Q Consensus 254 ahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~s 333 (950)
+|..+++|...= -.++|.+|+-.+..+... +..|...+..=-.+|+++.-.+- ....+|...
T Consensus 173 ---------ie~~F~~f~~lt--~~GD~~~A~eil~~l~~~----~~~l~~~~e~IP~l~~~l~~~~P---~ql~eL~~g 234 (560)
T PF06160_consen 173 ---------IEEEFSEFEELT--ENGDYLEAREILEKLKEE----TDELEEIMEDIPKLYKELQKEFP---DQLEELKEG 234 (560)
T ss_pred ---------HHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHhH---HHHHHHHHH
Confidence 222333322221 124677777777766554 66666666655556555532221 222223322
Q ss_pred HHHHHHHHhhhcCccchHHH--HHHHhHHHHHhhHHHHHhhhhhHH-HHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHH
Q 040943 334 LKELQEAQIQKAGSSSSLAK--LRNKLRSVEQMHRDCSANLRAKEA-EWSSQMQQMDAEMNGYRSELERKDAALKELKME 410 (950)
Q Consensus 334 LKElQEaqI~~agas~sl~k--Lr~Klr~LEq~Hr~Cs~~LraKEa-EW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~E 410 (950)
-+++.+ .| +.+.. +-..+..+...-..|...|..-+. +-...+..+.+.||.+-..++.=-.+-..+...
T Consensus 235 y~~m~~-----~g--y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~ 307 (560)
T PF06160_consen 235 YREMEE-----EG--YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKN 307 (560)
T ss_pred HHHHHH-----CC--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222 12 22222 445555665556666666654332 345567777788888888877777777777777
Q ss_pred HhhhhhHHHHHhhhhHHHHHHHHHHh
Q 040943 411 LEDYHSLTLQLKMQNEEISVMLLELE 436 (950)
Q Consensus 411 Le~c~s~~~Ql~~qNeE~s~mllvl~ 436 (950)
+......+.++.-+|.....-+.-|.
T Consensus 308 ~~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 308 LKELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666655544444
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.46 E-value=55 Score=42.42 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=79.7
Q ss_pred hHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhh
Q 040943 110 NRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWK 189 (950)
Q Consensus 110 ~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk 189 (950)
.-++...++.....-.+.+.+++.+-..|..++...-.-++....+++.. -.-+..+..+++++++|.
T Consensus 339 i~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~------------~~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 339 IEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT------------NNELGSELEERENKLEQL 406 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhhhhhHHHHHHHHHHH
Confidence 33445555555555556666666666666666666666666655555443 244566778899999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhh---hhhHhHhHHhhhhhhhhhhhhhhhhhhhhh
Q 040943 190 KEQFKHLEEAHEKLKDQFRTCKK---EWEHERSTLLDAISSLQTSLDSQTRISGDL 242 (950)
Q Consensus 190 ~Eqf~hLeeah~kl~~qfr~skk---EW~~ers~LlDeI~sLq~~LdSqtr~~edl 242 (950)
+.+-.-||+-...|+......+. +=+.++..+-+.|-+|.-++--......+|
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777777765554444 456777778888888877766666555544
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.41 E-value=42 Score=41.09 Aligned_cols=248 Identities=23% Similarity=0.328 Sum_probs=147.1
Q ss_pred hhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhh
Q 040943 79 TEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESE 158 (950)
Q Consensus 79 ~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~ 158 (950)
.+...+..||...+-. +.+|+..+-++.+-|.-=.+....+-..+|..|..++..++-....--+ ..-++.|.+
T Consensus 11 ~Erd~ya~~lk~e~a~----~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~p--a~pse~E~~ 84 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQ----WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPP--AGPSEVEQQ 84 (617)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccc--ccchHHHHH
Confidence 4556666666655333 3456666666666666666666666666676666655555433311111 011222222
Q ss_pred hhcch-hhhhh-hHHHHhhH---HhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhh---h
Q 040943 159 AKAPK-KLRER-DDMLLKLE---DENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQ---T 230 (950)
Q Consensus 159 a~a~k-e~~~r-ddm~~klE---eE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq---~ 230 (950)
..+-- .|+.. +++-.++. +.|..+-.-...+.+++.-||+.++.++.+- -++..|+..|.|=. +
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~--------~D~~kLLe~lqsdk~t~S 156 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ--------EDRQKLLEQLQSDKATAS 156 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhcccchHHH
Confidence 11111 12221 22222222 2234443333566667777777777766543 34555666554322 2
Q ss_pred hhhhhhhhh----hhhHHHHH-HhhH------HhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHH
Q 040943 231 SLDSQTRIS----GDLQNRLQ-LCNQ------ALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEI 299 (950)
Q Consensus 231 ~LdSqtr~~----edlq~rl~-mCnq------aLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eI 299 (950)
+--||.+-. ..|+.+|- |+|. +|-.|.-..|=|...+.++....+++...+...-+.+-.|..+||.-.
T Consensus 157 RAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~ 236 (617)
T PF15070_consen 157 RALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYL 236 (617)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334555532 34666664 7775 678888888889999999999999999888888888999999999988
Q ss_pred HHHHhhh-------hhhhHHHHHHHHHHH---HhHHhh----HHHHHhHHHHHHH
Q 040943 300 AALRHSL-------GTKETFYKEMEYQAT---KLEREN----QELLMSLKELQEA 340 (950)
Q Consensus 300 a~LR~sL-------~~Ket~~kE~ey~~~---kLEqEN----~el~~sLKElQEa 340 (950)
..|-+.. .+|+++++.+-+... +|-++. -.+-++.+|||++
T Consensus 237 ~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~ 291 (617)
T PF15070_consen 237 GHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEA 291 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888764 588899988877544 555443 2334566777764
No 56
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.37 E-value=50 Score=41.80 Aligned_cols=263 Identities=22% Similarity=0.254 Sum_probs=157.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhh-
Q 040943 32 LKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQN- 110 (950)
Q Consensus 32 Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~- 110 (950)
+-...-+.-+.|-+.++.++++-+++.+++++|-.......+=-..|++++.-..-+-+.|..+......+..+|.++-
T Consensus 132 ~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~ 211 (1265)
T KOG0976|consen 132 AQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLI 211 (1265)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333335557778888888899999999999997654433333345777777777766777667666666666665431
Q ss_pred --HHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhh-------hhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHH
Q 040943 111 --RVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGL-------LSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSK 181 (950)
Q Consensus 111 --r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~-------ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~ 181 (950)
-..++ .++.+|+ ..++|-.-..+ +-+..+-|+-++ .+ ||+.
T Consensus 212 ~nD~~sl------e~~~~q~-----~tq~vl~ev~QLss~~q~ltp~rk~~s~i~----------E~-d~~l-------- 261 (1265)
T KOG0976|consen 212 EKDQKSL------ELHKDQE-----NTQKVLKEVMQLSSQKQTLTPLRKTCSMIE----------EQ-DMDL-------- 261 (1265)
T ss_pred cchHHHH------HHHHHHH-----HHHHHHHHHHHHHHhHhhhhhHhhhhHHHH----------HH-HHHH--------
Confidence 11111 1222222 22333222223 333344444332 22 2221
Q ss_pred HHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhh
Q 040943 182 FENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRK 261 (950)
Q Consensus 182 ~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK 261 (950)
+-+-+.+-..-.+|.--+|+|=|+.|.-....---.+.+++++. .--+|.-.-+--+|
T Consensus 262 -------------------q~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq---t~t~a~gdseqatk 319 (1265)
T KOG0976|consen 262 -------------------QASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ---TRTRADGDSEQATK 319 (1265)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHhhccHHHHHH
Confidence 12223333444578888899999888666555555555555542 23356666667789
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhHHHHHhh-------hhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhH
Q 040943 262 YLEVQVSEFRTHYDNTFAEYQDAKSQLECLT-------NQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSL 334 (950)
Q Consensus 262 ~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt-------~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sL 334 (950)
||+.++-+++..--++--..-+||-..+++. -+||.=.++.|+.-.-|++. .+++.||
T Consensus 320 ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv---------------e~elqsL 384 (1265)
T KOG0976|consen 320 YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV---------------EEELQSL 384 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH---------------HHHHHHH
Confidence 9999999999998888888888888777654 45566666666655444443 2344455
Q ss_pred HHHHHHHhhhcCccchHHHHHHHhHHHHHhhHH
Q 040943 335 KELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRD 367 (950)
Q Consensus 335 KElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~ 367 (950)
.++|.- .+. -+.-|+|+.++|||..++
T Consensus 385 ~~l~ae-rqe-----QidelKn~if~~e~~~~d 411 (1265)
T KOG0976|consen 385 LELQAE-RQE-----QIDELKNHIFRLEQGKKD 411 (1265)
T ss_pred HHHHHH-HHH-----HHHHHHHhhhhhhhccch
Confidence 555521 111 155689999999998665
No 57
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.19 E-value=49 Score=41.35 Aligned_cols=162 Identities=19% Similarity=0.286 Sum_probs=88.8
Q ss_pred hhhHHHHHHh-----hHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHH
Q 040943 240 GDLQNRLQLC-----NQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYK 314 (950)
Q Consensus 240 edlq~rl~mC-----nqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~k 314 (950)
.||=+-|++| .|-|.+.|.-+..|-.-+-+....++...+....--.+|..|+.+ |.+|++.-+.++.-..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~----l~aL~~l~~~ke~~~~ 331 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQ----LDALRKLQEDKEQQSA 331 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhccchhhhhh
Confidence 3666666665 366667777777777777777777777777777777778888877 7777774333332100
Q ss_pred -HHHHHH------HHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhH
Q 040943 315 -EMEYQA------TKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMD 387 (950)
Q Consensus 315 -E~ey~~------~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~ 387 (950)
..+-.. .-.+.+...+ +.-++... .++.-...|+..|+.|...|..|-.+.+.--..|...+..|.
T Consensus 332 ~d~~~~~~s~~d~~~ye~Di~~~-----eiLe~Ky~--vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ 404 (717)
T PF09730_consen 332 EDSEKERDSHEDGDYYEVDINGL-----EILECKYK--VAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLK 404 (717)
T ss_pred hhcccccccccccchhhhccccH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000000000 11122222 233335556666666666666666666655566777776666
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHh
Q 040943 388 AEMNGYRSELERKDAALKELKMELE 412 (950)
Q Consensus 388 ~el~~~~s~L~sKd~~i~eLq~ELe 412 (950)
..+..+-.........|..|+.+|-
T Consensus 405 ekl~~lek~~re~qeri~~LE~ELr 429 (717)
T PF09730_consen 405 EKLMSLEKSSREDQERISELEKELR 429 (717)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6666654444333445555555544
No 58
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.13 E-value=23 Score=37.43 Aligned_cols=112 Identities=22% Similarity=0.302 Sum_probs=81.9
Q ss_pred HHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHh
Q 040943 114 VLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQF 193 (950)
Q Consensus 114 vlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf 193 (950)
.-||+.......++-+-|+....||-.|+..|..+..++.+++++++. .|+=+.
T Consensus 46 ~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~------~~~el~-------------------- 99 (194)
T PF15619_consen 46 EKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD------KDEELL-------------------- 99 (194)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH--------------------
Confidence 457777778888889999999999999999999988888877665432 222222
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhh
Q 040943 194 KHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSH 255 (950)
Q Consensus 194 ~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLah 255 (950)
.+...+.+|++- +.+==-.||..|...++.+.+.|+...+-..+|.+++++-+.++.+
T Consensus 100 -k~~~~l~~L~~L---~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 100 -KTKDELKHLKKL---SEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred -HHHHHHHHHHHH---HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 223333333332 2212234688999999999999999999999999999988877666
No 59
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.05 E-value=52 Score=41.43 Aligned_cols=50 Identities=20% Similarity=0.110 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhhHHHHHHhhhhhh--hhhhchHHHHhhHHHhhHHHHHHhh
Q 040943 69 QLFEGLKRSLTEKESIIKCLGAAND--KLRFDFNEKCRKLEEQNRVLVLALD 118 (950)
Q Consensus 69 ~~~e~L~~~L~eKEs~i~hL~aand--kL~~~~~ek~~k~e~e~r~lvlaLd 118 (950)
.+..-|.+.-.++.-++..|-.... ++.....+.++........+-..+.
T Consensus 144 e~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 144 EFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677777766654443 4444444555555544444444444
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.90 E-value=58 Score=41.72 Aligned_cols=223 Identities=21% Similarity=0.288 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhHHHHHHHHhHHhhhhHHHHhhhhccchhHHHHHHHHHHH
Q 040943 500 HIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKSIA 579 (950)
Q Consensus 500 ~~Eeq~~lMQkELd~yKEMLEeSSr~Ql~Lkeq~lq~E~dlKekL~e~~daLD~AnsELaek~~E~s~~Efel~~wKs~~ 579 (950)
..|+.-..+|.|++..||-+|+=+++--+||.+.-..=+|- -+....+.-|+|..=..-|.++
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~-----------------~~~ss~qfkqlEqqN~rLKdal 384 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG-----------------QAASSYQFKQLEQQNARLKDAL 384 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------------cccchHHHHHHHHHHHHHHHHH
Confidence 34555667888898888888888888777776542221110 0111223345555555566666
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH-------HHHHHHHHHHH
Q 040943 580 ERLKF----ELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILS-------LEQDLKLKALE 648 (950)
Q Consensus 580 e~LK~----~leEn~~lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~~i~~lq~qi~~-------lE~~lk~k~l~ 648 (950)
=||++ +-.+.+-+.+++|.- +-|..+ ++..+++|...++..+..|.+|+.||.+ |++.--
T Consensus 385 VrLRDlsA~ek~d~qK~~kelE~k---~sE~~e-L~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtd----- 455 (1243)
T KOG0971|consen 385 VRLRDLSASEKQDHQKLQKELEKK---NSELEE-LRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTD----- 455 (1243)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHH---hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHh-----
Confidence 67764 566777788888754 345544 4556899999999999999999999876 333211
Q ss_pred HHHhhhhhhhhhhHHHHHHHhhhhhhhhhhHHHHHHHHh----hhhhhhhHHHhhhhHHHHHHhhhhhHHHHHHHHHHHH
Q 040943 649 AASNARMETAMSFEIEKQRFSQITKEKDEILEDLQRQIG----WLEEESLRRELESSLLTQICAERSFEHEKESLIQLLE 724 (950)
Q Consensus 649 aa~~ak~E~a~s~~~Ek~~L~qi~~EKd~~IddLQk~I~----~LEqEsl~rELe~A~lak~eaErs~e~EKe~liqiv~ 724 (950)
-|++.+.+-+ .|--+|.+-. -+++++.++. -||- -||.|||-+-.++ +.+...++.-++.+-
T Consensus 456 ----knlnlEekVk----lLeetv~dlE-alee~~EQL~Esn~ele~-DLreEld~~~g~~----kel~~r~~aaqet~y 521 (1243)
T KOG0971|consen 456 ----KNLNLEEKVK----LLEETVGDLE-ALEEMNEQLQESNRELEL-DLREELDMAKGAR----KELQKRVEAAQETVY 521 (1243)
T ss_pred ----hccCHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Confidence 1222221111 1111111111 1222222211 2222 3788999886666 445566677788888
Q ss_pred HHhhhHHHHHHHHHHHHHHhhhhhhhhhHHHHhHHHHH
Q 040943 725 EKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEI 762 (950)
Q Consensus 725 EKD~~IddLq~~V~slEq~f~~sl~sfs~~laEkq~Ei 762 (950)
..|++|-.+-.+|.-|.-.+...-.--.|..-+-|-.+
T Consensus 522 DrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~ 559 (1243)
T KOG0971|consen 522 DRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPP 559 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCC
Confidence 99999999999998888777665553222233444444
No 61
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.84 E-value=61 Score=41.89 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=109.0
Q ss_pred hchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchh---------hhhhhHHHHhhHHhhHHHHHHhhhhHHHh
Q 040943 123 KNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKK---------LRERDDMLLKLEDENSKFENQLKWKKEQF 193 (950)
Q Consensus 123 ~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke---------~~~rddm~~klEeE~~~~e~qLkwk~Eqf 193 (950)
+.....+.++.-+.=|+++...+....+.....|+++++... ++.=++-+.-+-.++.+.+..+.|+++..
T Consensus 245 ~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl 324 (1174)
T KOG0933|consen 245 KRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETL 324 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555666666666666666666666555444 33445666677778888999999999988
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHhHhHHhh---hhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhh
Q 040943 194 KHLEEAHEKLKDQFRTCKKEWEHERSTLLD---AISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEF 270 (950)
Q Consensus 194 ~hLeeah~kl~~qfr~skkEW~~ers~LlD---eI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~ 270 (950)
...++-.+.++.-....++=-...++.+-+ .-..++...-......++-+.-++--..-+...+.--+.++.++-.-
T Consensus 325 ~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~a 404 (1174)
T KOG0933|consen 325 NGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDA 404 (1174)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHH
Confidence 888877777766544333322222222222 22222222222222222222222222222333333445666666666
Q ss_pred hhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHH
Q 040943 271 RTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKEL 337 (950)
Q Consensus 271 K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKEl 337 (950)
|..++.+-++-.-++-.++.+..+ |-..-..+++...=|..-...+.-+..+-.+++.+|+.|
T Consensus 405 K~~~~~~~t~~k~a~~k~e~~~~e----lk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 405 KITLSEASTEIKQAKLKLEHLRKE----LKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777776777766666666665432 433333333333333333333333344444555544443
No 62
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=89.94 E-value=28 Score=36.49 Aligned_cols=33 Identities=42% Similarity=0.489 Sum_probs=28.6
Q ss_pred HHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHH
Q 040943 318 YQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRS 360 (950)
Q Consensus 318 y~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~ 360 (950)
..+..|.+||.+|+.+|+|||-| +-.+=+|||.
T Consensus 70 ~qi~~Lq~EN~eL~~~leEhq~a----------lelIM~KyRe 102 (181)
T PF05769_consen 70 RQIRQLQQENRELRQSLEEHQSA----------LELIMSKYRE 102 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 34788999999999999999976 7888888884
No 63
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.53 E-value=58 Score=39.59 Aligned_cols=193 Identities=23% Similarity=0.242 Sum_probs=118.7
Q ss_pred hhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhH-HHHHHhHHHHHhhhhhhhhhhhhHhhh
Q 040943 76 RSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQ-EQKVNVFKAEIEGLKGLLSASQKKCVK 154 (950)
Q Consensus 76 ~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dq-e~~~~~~~~ei~~lk~~ls~~ekkc~e 154 (950)
+++.|| ++|..-||.|- +.=+|.+-||.+||.|..=++.....-.-- -.=--.|..||...+..+....+....
T Consensus 36 sR~rEK----~El~~LNDRLA-~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~ 110 (546)
T KOG0977|consen 36 SREREK----KELQELNDRLA-VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAK 110 (546)
T ss_pred HHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 445555 35666788886 677899999999999999888876543332 222346788888888888888777666
Q ss_pred hhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhh
Q 040943 155 AESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDS 234 (950)
Q Consensus 155 aek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdS 234 (950)
++..+. +|.+|+..+..++- +.++ .+..++.-.++|. +-|+.++.
T Consensus 111 ~e~ei~-------------kl~~e~~elr~~~~---~~~k--------~~~~~re~~~~~~-------~~l~~leA---- 155 (546)
T KOG0977|consen 111 LEIEIT-------------KLREELKELRKKLE---KAEK--------ERRGAREKLDDYL-------SRLSELEA---- 155 (546)
T ss_pred HHHHHH-------------HhHHHHHHHHHHHH---HHHH--------HHhhhHHHHHHHh-------hhhhhhhh----
Confidence 554432 12222222221110 0111 1112222222222 23333332
Q ss_pred hhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHH
Q 040943 235 QTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYK 314 (950)
Q Consensus 235 qtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~k 314 (950)
.+++=-.+.+.+|.++..+|..-+-.+.+...+|+++ |.|+..=........+|..
T Consensus 156 -----------------e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l-------d~Etllr~d~~n~~q~Lle 211 (546)
T KOG0977|consen 156 -----------------EINTLKRRIKALEDELKRLKAENSRLREELARARKQL-------DDETLLRVDLQNRVQTLLE 211 (546)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHH
Confidence 2222237889999999999998888888888887766 5566555556666778888
Q ss_pred HHHHHHHHhHHhhHHHHH
Q 040943 315 EMEYQATKLERENQELLM 332 (950)
Q Consensus 315 E~ey~~~kLEqEN~el~~ 332 (950)
|+.+...-=++|..+++.
T Consensus 212 el~f~~~~h~~eI~e~~~ 229 (546)
T KOG0977|consen 212 ELAFLKRIHKQEIEEERR 229 (546)
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 888887766666666554
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.99 E-value=84 Score=40.74 Aligned_cols=224 Identities=27% Similarity=0.322 Sum_probs=120.7
Q ss_pred hHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhH
Q 040943 219 STLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKE 298 (950)
Q Consensus 219 s~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~e 298 (950)
.++=.-|..|+.-|.-++...-++++-|+| ++++++.++---++.|++---|+--+ +|
T Consensus 180 Adle~kir~LrqElEEK~enll~lr~eLdd--------------leae~~klrqe~~e~l~ea~ra~~yr--------de 237 (1195)
T KOG4643|consen 180 ADLEKKIRTLRQELEEKFENLLRLRNELDD--------------LEAEISKLRQEIEEFLDEAHRADRYR--------DE 237 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhhhhh--------hH
Confidence 334445667777777776555555555553 66777777776677666655554333 45
Q ss_pred HHHHHhhhhhhhHHHHH-------HHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHh
Q 040943 299 IAALRHSLGTKETFYKE-------MEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSAN 371 (950)
Q Consensus 299 Ia~LR~sL~~Ket~~kE-------~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~ 371 (950)
+++||+--..=++=||| .+-+..-|+++|+-|+.. |++=++|||+-.|-+
T Consensus 238 ldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLlee-keMLeeQLq~lrars---------------------- 294 (1195)
T KOG4643|consen 238 LDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEE-KEMLEEQLQKLRARS---------------------- 294 (1195)
T ss_pred HHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhcc----------------------
Confidence 66666644333333333 344667788888887764 666677777654433
Q ss_pred hhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHhH
Q 040943 372 LRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQEMLEKSLRCQRH 451 (950)
Q Consensus 372 LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql~~qNeE~s~mllvl~k~~E~le~S~r~Ql~ 451 (950)
.+ +...+++=++..+|++..+..+.=-.-+.+|+.| +++|.++++=.-.-...+..+ -+-+..++.-
T Consensus 295 --e~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE-------nstLq~q~eqL~~~~ellq~~---se~~E~en~S 361 (1195)
T KOG4643|consen 295 --EG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE-------NSTLQVQKEQLDGQMELLQIF---SENEELENES 361 (1195)
T ss_pred --cc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHhhhhhhHhhhh---hcchhhhhhh
Confidence 01 3455666666666666666666555555555544 233333331111101111111 1112233333
Q ss_pred HHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhhhHhhh-hhhhHHHHHHHHHHHHH
Q 040943 452 LEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVE-SLDHIEEQRVLMEKELQ 513 (950)
Q Consensus 452 lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL~rriE-sld~~Eeq~~lMQkELd 513 (950)
++....++.+ +.|..-+=+-|++.++|+.+=. +|+-.--++..|.++-.
T Consensus 362 l~~e~eqLts-------------~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~K 411 (1195)
T KOG4643|consen 362 LQVENEQLTS-------------DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHK 411 (1195)
T ss_pred HHHHHHHhhh-------------HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhH
Confidence 4444444433 3455556667788888876544 66666666666666543
No 65
>PRK01156 chromosome segregation protein; Provisional
Probab=88.53 E-value=75 Score=39.63 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=10.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 040943 566 HQIEFELWIWKSIAERLKFELEE 588 (950)
Q Consensus 566 s~~Efel~~wKs~~e~LK~~leE 588 (950)
..++-++..+.+-.+.|+..+.+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~ 699 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRAR 699 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 66
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.49 E-value=0.14 Score=61.81 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=0.0
Q ss_pred hHHhhhhhhhhhhhHHHHHHHHHHHHhhhh
Q 040943 386 MDAEMNGYRSELERKDAALKELKMELEDYH 415 (950)
Q Consensus 386 L~~el~~~~s~L~sKd~~i~eLq~ELe~c~ 415 (950)
-..++..++.++.-|+..|..|..+++...
T Consensus 620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k 649 (713)
T PF05622_consen 620 SSPEIQALKKQLQEKDRRIESLEKELEKSK 649 (713)
T ss_dssp ------------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 446778888899999999998888887554
No 67
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.37 E-value=9.5 Score=37.33 Aligned_cols=118 Identities=18% Similarity=0.386 Sum_probs=82.0
Q ss_pred HhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhh-hhhhHHHHhhHHhhHHHHHHh
Q 040943 108 EQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKL-RERDDMLLKLEDENSKFENQL 186 (950)
Q Consensus 108 ~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~-~~rddm~~klEeE~~~~e~qL 186 (950)
.++..+...+........+.+.++...+.++.........++.+- .++| .|.+|+ +...+++.++
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y---------E~El~~Ha~~~-----~~L~~lr~e~ 68 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKY---------ERELVKHAEDI-----KELQQLREEL 68 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhHHHH-----HHHHHHHHHH
Confidence 445555555555556666666666666666666666655555542 1222 233332 4456777778
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhh---hhhhhh
Q 040943 187 KWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLD---SQTRIS 239 (950)
Q Consensus 187 kwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~Ld---Sqtr~~ 239 (950)
...+-++..|.......+..+..++.-|..+|..|-++|..++.++| .|.+++
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999988754 454443
No 68
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.33 E-value=79 Score=39.62 Aligned_cols=91 Identities=21% Similarity=0.353 Sum_probs=73.5
Q ss_pred hhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhh---hHhHhHHhhhhhhhhhhhhhhhhhh
Q 040943 163 KKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEW---EHERSTLLDAISSLQTSLDSQTRIS 239 (950)
Q Consensus 163 ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW---~~ers~LlDeI~sLq~~LdSqtr~~ 239 (950)
|+.|.-.| |-.|||||..+++|+-- +|.+.-|+ -+|-..|-++|..|...|+--+|.=
T Consensus 91 rE~rll~d-yselEeENislQKqvs~------------------Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk 151 (717)
T PF09730_consen 91 REARLLQD-YSELEEENISLQKQVSV------------------LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLK 151 (717)
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHHHH------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 57899999999888753 33444444 3567889999999999999999999
Q ss_pred hhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhh
Q 040943 240 GDLQNRLQLCNQALSHEESRRKYLEVQVSEFRT 272 (950)
Q Consensus 240 edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~ 272 (950)
+=-++||+=+-.+|..|--++.-|--|++-+.+
T Consensus 152 ~iae~qleEALesl~~EReqk~~LrkEL~~~~~ 184 (717)
T PF09730_consen 152 EIAEKQLEEALESLKSEREQKNALRKELDQHLN 184 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987554
No 69
>PRK09039 hypothetical protein; Validated
Probab=87.92 E-value=34 Score=38.76 Aligned_cols=78 Identities=26% Similarity=0.312 Sum_probs=39.5
Q ss_pred hhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcC--
Q 040943 269 EFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAG-- 346 (950)
Q Consensus 269 e~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~ag-- 346 (950)
.+...+.+.-+.|.++..++.-|+.+ |++||..|+.=+.-+ .-.|+...+....+..|+ ..|+.|=
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~q----I~aLr~Qla~le~~L-------~~ae~~~~~~~~~i~~L~-~~L~~a~~~ 187 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQ----IAALRRQLAALEAAL-------DASEKRDRESQAKIADLG-RRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33344444455666666666666655 666666644433333 333333344444444443 3444441
Q ss_pred ccchHHHHHHHh
Q 040943 347 SSSSLAKLRNKL 358 (950)
Q Consensus 347 as~sl~kLr~Kl 358 (950)
-+-.|..+|+.|
T Consensus 188 ~~~~l~~~~~~~ 199 (343)
T PRK09039 188 RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHhHHHH
Confidence 244567777777
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.93 E-value=53 Score=36.09 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=54.1
Q ss_pred hHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhH
Q 040943 219 STLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKE 298 (950)
Q Consensus 219 s~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~e 298 (950)
++|-.++.+|....+++..-....+..+.-||-++.-=+..-+=++.++|-+..-...+-..-.+++..+ =+....++
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~~~~e 90 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL--SAVKDERE 90 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHH
Confidence 4666788899999999999999999999999988887555555555555555544444444444444444 22333445
Q ss_pred HHHHHh
Q 040943 299 IAALRH 304 (950)
Q Consensus 299 Ia~LR~ 304 (950)
+.+|=+
T Consensus 91 ~~aL~~ 96 (239)
T COG1579 91 LRALNI 96 (239)
T ss_pred HHHHHH
Confidence 554433
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.74 E-value=29 Score=38.00 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHhhhhhhH
Q 040943 5 YEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNE--KTEEISEVKQLFEGLKRSLTEKE 82 (950)
Q Consensus 5 ~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~--k~eEi~~~k~~~e~L~~~L~eKE 82 (950)
-++|+-++++++.++..+-.+-.-+++++.---..-..||+++.+..+.---+.+ +.++++.+..-..-++.+.+..+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le 109 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999988888888888888776666666777777777665433322 23344444443333333444333
Q ss_pred HHHHHh
Q 040943 83 SIIKCL 88 (950)
Q Consensus 83 s~i~hL 88 (950)
+-|.+|
T Consensus 110 ~el~~l 115 (239)
T COG1579 110 DELAEL 115 (239)
T ss_pred HHHHHH
Confidence 333333
No 72
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=86.12 E-value=7.9 Score=43.26 Aligned_cols=96 Identities=27% Similarity=0.404 Sum_probs=62.9
Q ss_pred HHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHH
Q 040943 128 EQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQF 207 (950)
Q Consensus 128 e~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qf 207 (950)
+..+|-..-||..||++|. |||+|-+ |||+-.|+-||--|. | |.+.
T Consensus 81 ~~~l~dRetEI~eLksQL~-------------------RMrEDWI---EEECHRVEAQLALKE--------A----RkEI 126 (305)
T PF15290_consen 81 ENRLHDRETEIDELKSQLA-------------------RMREDWI---EEECHRVEAQLALKE--------A----RKEI 126 (305)
T ss_pred HHHHHhhHHHHHHHHHHHH-------------------HHHHHHH---HHHHHHHHHHHHHHH--------H----HHHH
Confidence 3445556778999999985 7888874 899999999985442 2 2222
Q ss_pred HhhhhhhhHhHhHHhh---hhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHH
Q 040943 208 RTCKKEWEHERSTLLD---AISSLQTSLDSQTRISGDLQNRLQLCNQALSHEE 257 (950)
Q Consensus 208 r~skkEW~~ers~LlD---eI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEE 257 (950)
+--|-=-+-=|+-|.| .|-.|=..++-|++.+|.|=.-++|-.--.+.+|
T Consensus 127 kQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~~rde 179 (305)
T PF15290_consen 127 KQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGSLRDE 179 (305)
T ss_pred HHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhcccccc
Confidence 2222222333455555 5777778889999999988777776544444433
No 73
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.79 E-value=55 Score=37.19 Aligned_cols=170 Identities=23% Similarity=0.288 Sum_probs=87.2
Q ss_pred hhchhHHHHHHhHHHHHhhhhhhhhhhhhH-------hhhhhhhhhcchhhhhhh-----------HHH----HhhHHhh
Q 040943 122 EKNIDQEQKVNVFKAEIEGLKGLLSASQKK-------CVKAESEAKAPKKLRERD-----------DML----LKLEDEN 179 (950)
Q Consensus 122 ~~~~dqe~~~~~~~~ei~~lk~~ls~~ekk-------c~eaek~a~a~ke~~~rd-----------dm~----~klEeE~ 179 (950)
++|..+++++......|..|+--|+....= +-+.+-..-.+..++.+. |.+ -.||+||
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 456666777777777777777666544322 112333333443343333 333 4589999
Q ss_pred HHHHHHhhhhHHHhhhHHHH----HHHHHHHHHhhhhhhh---HhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhh--
Q 040943 180 SKFENQLKWKKEQFKHLEEA----HEKLKDQFRTCKKEWE---HERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCN-- 250 (950)
Q Consensus 180 ~~~e~qLkwk~Eqf~hLeea----h~kl~~qfr~skkEW~---~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCn-- 250 (950)
.+++...--.+--...+|+- ...|..||..+...-. .|-+.=.++....|..+.+=..-.=|+|+|++++.
T Consensus 177 ~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 177 EQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE 256 (306)
T ss_pred HHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 98876544333222233332 2345567776654321 11111111111111111111112234555555432
Q ss_pred -----HHhhh-HHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhh
Q 040943 251 -----QALSH-EESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLT 292 (950)
Q Consensus 251 -----qaLah-EEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt 292 (950)
+-|.- =++++ .|-+++.+|+.+|..+.+=+.+|.+++-.|-
T Consensus 257 nEeL~q~L~~ske~Q~-~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 257 NEELQQHLQASKESQR-QLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111 22333 3688999999999999999999988776554
No 74
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=85.41 E-value=28 Score=41.86 Aligned_cols=179 Identities=22% Similarity=0.270 Sum_probs=97.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHH---Hhhhhh
Q 040943 299 IAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCS---ANLRAK 375 (950)
Q Consensus 299 Ia~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs---~~LraK 375 (950)
||.|.. +|+.+.=|-.+...|||+||+-+...-|+....+..+..+ .-..+-..|..++ .....-
T Consensus 318 Ia~LEq---EKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~---------e~~~l~~~~e~~se~s~~~~~e 385 (518)
T PF10212_consen 318 IAKLEQ---EKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQ---------ESSVLSEASEQQSEASSQSVDE 385 (518)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh---------hhhhhccccccccccccccccc
Confidence 666665 8999988888889999999998887666553322222111 1111111111111 111111
Q ss_pred HHHHhHhHHhhHHhhhhhhhhhhhHHHH--------HHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHh-------hHHH
Q 040943 376 EAEWSSQMQQMDAEMNGYRSELERKDAA--------LKELKMELEDYHSLTLQLKMQNEEISVMLLELE-------NDQE 440 (950)
Q Consensus 376 EaEW~~Q~eKL~~el~~~~s~L~sKd~~--------i~eLq~ELe~c~s~~~Ql~~qNeE~s~mllvl~-------k~~E 440 (950)
...|..-..-++..-+.-...-++++.. |.+|-.++..|.|...=. -.|+..+..-|+ .+-+
T Consensus 386 ~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f---~~Ec~aL~~rL~~aE~ek~~l~e 462 (518)
T PF10212_consen 386 PLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHF---YAECRALQKRLESAEKEKESLEE 462 (518)
T ss_pred ccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222221111111112233444443 445555555555552211 124444433333 2223
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhhh
Q 040943 441 MLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLS 492 (950)
Q Consensus 441 ~le~S~r~Ql~lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL~ 492 (950)
-+......=..+++...-+..+++.||...++=|..+|..|+.+++.|.+|.
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444577777788889999999999999999999999999998876
No 75
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.06 E-value=1e+02 Score=36.84 Aligned_cols=56 Identities=29% Similarity=0.523 Sum_probs=35.6
Q ss_pred HhhhhH----HHhhhHHHHHHHHHHHHHhhhhhh---hHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHH
Q 040943 185 QLKWKK----EQFKHLEEAHEKLKDQFRTCKKEW---EHERSTLLDAISSLQTSLDSQTRISGDLQNRLQ 247 (950)
Q Consensus 185 qLkwk~----Eqf~hLeeah~kl~~qfr~skkEW---~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~ 247 (950)
.+-||+ ++..+.+.=+.+++.++...|+.. +.+|...+++. ++-.|++++|..+|+
T Consensus 17 ~~~~k~~~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~EL-------e~akr~veel~~kLe 79 (522)
T PF05701_consen 17 SIDWKKHQSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSEL-------ESAKRTVEELKLKLE 79 (522)
T ss_pred ccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 346763 566666666677777777777655 56666666654 444566666666666
No 76
>PRK09039 hypothetical protein; Validated
Probab=83.71 E-value=60 Score=36.87 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=63.1
Q ss_pred HhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHH---HhhhcchHHHHHHHHhhhHhHHHH-HHHh
Q 040943 792 ELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQL---EENLTTSDALVIELRSENRKLLED-VLKL 867 (950)
Q Consensus 792 ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~m---e~k~r~se~~v~eLk~en~~l~~~-~~~l 867 (950)
+++.....++..|..++..++...-.-..+..++++....+-.+...+ |.+.+....-+..|+.+-.+.+.. |-.|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667777766666666666666666666666666666666 566677788888888888887755 7788
Q ss_pred hHHhhhHHhhhh
Q 040943 868 SSERENLLGFLG 879 (950)
Q Consensus 868 ssEr~~Ll~~~~ 879 (950)
..=|.+++|.+.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 899999988775
No 77
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.60 E-value=1.5e+02 Score=38.37 Aligned_cols=208 Identities=25% Similarity=0.289 Sum_probs=119.7
Q ss_pred HHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHh-HHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhh
Q 040943 317 EYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKL-RSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRS 395 (950)
Q Consensus 317 ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Kl-r~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s 395 (950)
-|++-.|||-|.-|..-|=-|+ |.|.+=+--+.|+ +.||--|-..+.--|-|| +|...+|.
T Consensus 367 s~qfkqlEqqN~rLKdalVrLR-------DlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE--------~Lsr~~d~--- 428 (1243)
T KOG0971|consen 367 SYQFKQLEQQNARLKDALVRLR-------DLSASEKQDHQKLQKELEKKNSELEELRRQKE--------RLSRELDQ--- 428 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHH---
Confidence 3677778888887777554444 4455444445554 234444444443333333 33332222
Q ss_pred hhhhHHHHHHHHHHHHhhhhhH---HHHHhhh--hHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHhhh
Q 040943 396 ELERKDAALKELKMELEDYHSL---TLQLKMQ--NEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEV 470 (950)
Q Consensus 396 ~L~sKd~~i~eLq~ELe~c~s~---~~Ql~~q--NeE~s~mllvl~k~~E~le~S~r~Ql~lqeq~~q~E~~~~eqLee~ 470 (950)
=+..|-+||....-.-.+ +.||.-. |-|..|+++. .-..-++.-.-.+-.|.+.-.++|.|+++.|...
T Consensus 429 ----aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLe--etv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 429 ----AESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLE--ETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred ----HHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333444444333222 4477666 4555576654 2233345555667778888899999999999888
Q ss_pred hhHHHHhHHHHHH--------------HHHhhhhhhHhhhhhhhHHHHHHHHHHHH----------HHHHHHHHhhhhhH
Q 040943 471 SNALDIANLELAK--------------EREKTASLSEVVESLDHIEEQRVLMEKEL----------QKNKEKLEEASRYQ 526 (950)
Q Consensus 471 ~~aL~~aqaelae--------------erEkvAsL~rriEsld~~Eeq~~lMQkEL----------d~yKEMLEeSSr~Q 526 (950)
+.++.-.+-.+.. =|+-+|.|.-++-.+- -++.+..+|. =-||-|+-+|..|-
T Consensus 503 ~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~---dq~~Sseees~q~~s~~~et~dyk~~fa~skaya 579 (1243)
T KOG0971|consen 503 KGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELT---DQQESSEEESQQPPSVDPETFDYKIKFAESKAYA 579 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHhcCCCCCchhhhHHHHHHHHhHHHH
Confidence 7776555444433 3444444433332111 1233333333 26999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhHH
Q 040943 527 LCIEEKAKQMESDSKRKLQEATDAL 551 (950)
Q Consensus 527 l~Lkeq~lq~E~dlKekL~e~~daL 551 (950)
--++-|+-++|-.+..+=-..+-||
T Consensus 580 raie~QlrqiEv~~a~rh~~~l~AF 604 (1243)
T KOG0971|consen 580 RAIEMQLRQIEVAQANRHMSLLTAF 604 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998887754444444
No 78
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=82.96 E-value=1.8e+02 Score=38.83 Aligned_cols=165 Identities=22% Similarity=0.254 Sum_probs=95.3
Q ss_pred hHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhh
Q 040943 110 NRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWK 189 (950)
Q Consensus 110 ~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk 189 (950)
--.++.|||-.-..+.|+-+.+-.+++++.+++++--.+++...-. ..+.+....+..-...+|.+...+...+.-.
T Consensus 180 ~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i---~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei 256 (1294)
T KOG0962|consen 180 ATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNI---HSGQRKIEKSKEEVSELENELGPIEAKIEEI 256 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3568999999999999999999999999999999866555443322 2233334444444566666666666655433
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhh--------hhhhhHHHHHHhhHHhhhHHHHhh
Q 040943 190 KEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTR--------ISGDLQNRLQLCNQALSHEESRRK 261 (950)
Q Consensus 190 ~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr--------~~edlq~rl~mCnqaLahEEs~rK 261 (950)
--.... +++...+++ .-..++..+-++|+.+...++--++ ....+..++.-=+.-+.-.+....
T Consensus 257 ~~~~~e----l~k~~~~~~----~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~ 328 (1294)
T KOG0962|consen 257 EKSLKE----LEKLLKQVK----LLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREIS 328 (1294)
T ss_pred HHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence 222222 222333322 3355666677777766665552222 222344444434444444445555
Q ss_pred HHHHHH---hhhhhhhhhhhHHHHHHh
Q 040943 262 YLEVQV---SEFRTHYDNTFAEYQDAK 285 (950)
Q Consensus 262 ~lE~e~---Se~K~~~~nv~~e~~ear 285 (950)
-++.+. +..|+.|.+.++.-+--.
T Consensus 329 ~l~~e~~~l~~~k~~~~~~~~~lq~e~ 355 (1294)
T KOG0962|consen 329 DLNEERSSLIQLKTELDLEQSELQAEA 355 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444 336677777776655433
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.75 E-value=1.4e+02 Score=36.59 Aligned_cols=283 Identities=21% Similarity=0.317 Sum_probs=159.6
Q ss_pred HHHHhhhhhhhhhhchHHHH-----------hhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHh
Q 040943 84 IIKCLGAANDKLRFDFNEKC-----------RKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKC 152 (950)
Q Consensus 84 ~i~hL~aandkL~~~~~ek~-----------~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc 152 (950)
-||-|-+.|.+|..+.+.-- ..|+.|++..--.||++...+-..+..|.-++.|+.-++..+-.+++.|
T Consensus 57 kVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 57 KVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKER 136 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46888899999988876543 3568888999999999999999999999999999999999999988888
Q ss_pred hhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhH----------hHHh
Q 040943 153 VKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHER----------STLL 222 (950)
Q Consensus 153 ~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~er----------s~Ll 222 (950)
..+..++. .--.-+-.++-+...+.-.++--.+.-++|=.=-..++.++...++.-+.|. .+|+
T Consensus 137 ~~~re~~~------~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Ll 210 (546)
T KOG0977|consen 137 RGAREKLD------DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLL 210 (546)
T ss_pred hhhHHHHH------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 77765543 2223334445554444444444444444444444444555555555444443 4444
Q ss_pred hhhhhhhhhhhh-----hh--------hhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHH-----H
Q 040943 223 DAISSLQTSLDS-----QT--------RISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQD-----A 284 (950)
Q Consensus 223 DeI~sLq~~LdS-----qt--------r~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~e-----a 284 (950)
.+|..+..-=.. +. +..+-|++.|+ .-|-++++.|+.....+-. -
T Consensus 211 eel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~-----------------~Ai~eiRaqye~~~~~nR~diE~~Y 273 (546)
T KOG0977|consen 211 EELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELA-----------------LAIREIRAQYEAISRQNRKDIESWY 273 (546)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHH-----------------HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444443321110 00 11112333332 2355677777766655433 1
Q ss_pred hHHHHHhhh----------hchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHH
Q 040943 285 KSQLECLTN----------QRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKL 354 (950)
Q Consensus 285 rs~ie~Lt~----------~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kL 354 (950)
+.+|..+.+ +.-.|+-.+|..+.+=-.=+-+++-+..-|++..++|...|.+-+. +.=..|
T Consensus 274 ~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r---------~~e~~L 344 (546)
T KOG0977|consen 274 KRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR---------SFEQAL 344 (546)
T ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh---------hhhhhh
Confidence 222222221 1223445555554444444455555555566666666555555442 223344
Q ss_pred HHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhh
Q 040943 355 RNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELER 399 (950)
Q Consensus 355 r~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~s 399 (950)
=.|=..+..|--.|..-+-..++=+..++ .|..+|..|+..|+.
T Consensus 345 ~~kd~~i~~mReec~~l~~Elq~LlD~ki-~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 345 NDKDAEIAKMREECQQLSVELQKLLDTKI-SLDAEIAAYRKLLEG 388 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchHh-HHHhHHHHHHHHhcc
Confidence 44555666666666666655555444444 455566666655543
No 80
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.89 E-value=86 Score=33.76 Aligned_cols=135 Identities=22% Similarity=0.304 Sum_probs=68.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhHHHHhhhhhhhhhh
Q 040943 708 AERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKK 787 (950)
Q Consensus 708 aErs~e~EKe~liqiv~EKD~~IddLq~~V~slEq~f~~sl~sfs~~laEkq~Ei~~~~~a~eki~~ae~La~leieeK~ 787 (950)
.++....-+..+-.+..+||+...|| .|+|..|......| ++.-+|.--|.. +-+.|.
T Consensus 60 ~~~~~~~~~~~i~~~~~erdq~~~dL----~s~E~sfsdl~~ry-----ek~K~vi~~~k~-----NEE~Lk-------- 117 (207)
T PF05010_consen 60 KQKQKELSEAEIQKLLKERDQAYADL----NSLEKSFSDLHKRY-----EKQKEVIEGYKK-----NEETLK-------- 117 (207)
T ss_pred HHhhHHhHHHHHHHHHhhHHHHHHHH----HHHHhhHHHHHHHH-----HHHHHHHHHHHH-----hHHHHH--------
Confidence 34556666777888899999988887 56665555333322 333333222222 233332
Q ss_pred hHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHHHHHh
Q 040943 788 LMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKL 867 (950)
Q Consensus 788 mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~~~~l 867 (950)
..+.....++...++.+..+ +.-++..|..--.++..|...-+..+..+.+.|....+...+|-..+---
T Consensus 118 -------k~~~ey~~~l~~~eqry~aL---K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 118 -------KCIEEYEERLKKEEQRYQAL---KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333333333222 22333444444455555555555555556666666666666666654444
Q ss_pred hHHhhhH
Q 040943 868 SSERENL 874 (950)
Q Consensus 868 ssEr~~L 874 (950)
+.|-+.|
T Consensus 188 ~kEn~EL 194 (207)
T PF05010_consen 188 TKENEEL 194 (207)
T ss_pred HHHHHHH
Confidence 4444443
No 81
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=79.90 E-value=91 Score=33.43 Aligned_cols=132 Identities=19% Similarity=0.313 Sum_probs=86.4
Q ss_pred hhHHHhhHHHHHHh-hhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHH
Q 040943 104 RKLEEQNRVLVLAL-DEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKF 182 (950)
Q Consensus 104 ~k~e~e~r~lvlaL-de~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~ 182 (950)
..+.+--.|+-.-| .+...++..-++.++..++-|.+|+..+..--++..++.+.+...-+ ....+|...++......
T Consensus 8 ~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e-~~i~~~~~~v~~~~~~~ 86 (247)
T PF06705_consen 8 ASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFE-EQINNMQERVENQISEK 86 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33333334444444 56678889999999999999999999999988888888877765322 23455665555555544
Q ss_pred HHHhhhhHHHhhhHHHHHHHHHHHHHhhhh----hhhHhHhHHhhhhhhhhhhhhhhhhhh
Q 040943 183 ENQLKWKKEQFKHLEEAHEKLKDQFRTCKK----EWEHERSTLLDAISSLQTSLDSQTRIS 239 (950)
Q Consensus 183 e~qLkwk~Eqf~hLeeah~kl~~qfr~skk----EW~~ers~LlDeI~sLq~~LdSqtr~~ 239 (950)
.+++. ..|..|.+-...|...+..-+. .|+.-...|.+.|..|...+|.-...-
T Consensus 87 ~~~~~---~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R 144 (247)
T PF06705_consen 87 QEQLQ---SRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNER 144 (247)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 4556666655555555544444 345555677888888888777765543
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.60 E-value=1.1e+02 Score=34.25 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=80.2
Q ss_pred HHHhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhh
Q 040943 741 EERFNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQK 820 (950)
Q Consensus 741 Eq~f~~sl~sfs~~laEkq~Ei~~~~~a~eki~~ae~La~leieeK~mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~ 820 (950)
...+...+.......+....++..++.+ ....+....-++..=+--|..+..+|...+.+|...+.+...+......
T Consensus 172 ~~~l~~~~~~l~~~~~~L~~e~~~Lk~~---~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 172 LEQLDELLPKLRERKAELEEELENLKQL---VEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666777777777766 2233444455555556677888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhH
Q 040943 821 IEAELALKQREMKNLTNQLEENLTTSDALVIELRSENR 858 (950)
Q Consensus 821 ~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~ 858 (950)
+++++.+-+.++.++....+....-+..=|..||.+-.
T Consensus 249 ~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 249 LEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 88888888888888888777554445555666665543
No 83
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.51 E-value=88 Score=33.14 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHhhccc
Q 040943 891 EDMQLMEMLGRLVQSLDS 908 (950)
Q Consensus 891 ~D~~Lm~~L~~~~q~~d~ 908 (950)
.+..+...|+-+.|-|.-
T Consensus 193 ~~~~isaALgyvahlv~l 210 (302)
T PF10186_consen 193 PDEEISAALGYVAHLVSL 210 (302)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 356777889988887774
No 84
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=78.54 E-value=1.7e+02 Score=35.69 Aligned_cols=245 Identities=22% Similarity=0.321 Sum_probs=151.6
Q ss_pred hhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhh-------hhhhhcchhhhh
Q 040943 95 LRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKA-------ESEAKAPKKLRE 167 (950)
Q Consensus 95 L~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~ea-------ek~a~a~ke~~~ 167 (950)
|..+.++...+...|.+.|- .++.....|+. +.+++-.-|=|+.+ |++.+++...|.
T Consensus 154 L~k~qe~~~~k~d~E~arm~--------------aqi~~l~eEmS--~r~l~reakl~~~lqk~f~alEk~mka~e~~rl 217 (531)
T PF15450_consen 154 LQKSQEEDSQKVDNEVARMQ--------------AQITKLGEEMS--LRFLKREAKLCSFLQKSFLALEKRMKAQESSRL 217 (531)
T ss_pred HHhcchhhHHhhhhHHHHHH--------------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443 34555556654 24555555555555 555555533333
Q ss_pred hhHHHHhhHHhhHHHHHHhhhhH------HHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhh
Q 040943 168 RDDMLLKLEDENSKFENQLKWKK------EQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGD 241 (950)
Q Consensus 168 rddm~~klEeE~~~~e~qLkwk~------Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~ed 241 (950)
+-+-. |.+ +.--+|.+ |.|.||-. +....-.-|..|++.+++....|...+--=|..+.-
T Consensus 218 ~~E~~--lre-----ElE~rW~~lq~l~Ee~l~al~g-------q~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~ 283 (531)
T PF15450_consen 218 RTERS--LRE-----ELESRWQKLQELTEERLRALQG-------QQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQ 283 (531)
T ss_pred HHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHh-------hHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 32221 111 11224554 34444433 333344467789999999999999888888888888
Q ss_pred hHHHHH-HhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhc-hhHHHHHHhhhhhhhHHHHHHHHH
Q 040943 242 LQNRLQ-LCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQR-DKEIAALRHSLGTKETFYKEMEYQ 319 (950)
Q Consensus 242 lq~rl~-mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~r-d~eIa~LR~sL~~Ket~~kE~ey~ 319 (950)
-+..|. .-+-....=.++-++++..+.+|.+.++|-.+-.+-| -.++.+= +.+++.|+ ||.
T Consensus 284 ~q~sL~kvl~aE~kaR~~k~~~e~sk~eeL~~~L~~~lea~q~a----gkla~Qe~~~~ld~Lq-----------Eks-- 346 (531)
T PF15450_consen 284 NQKSLNKVLNAEQKARDAKEKLEESKAEELATKLQENLEAMQLA----GKLAQQETQSELDLLQ-----------EKS-- 346 (531)
T ss_pred HHHHHHHHHhhHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHh----hhhhHhhhhhHHHHHH-----------HHH--
Confidence 777775 2222223334666789999999999999988887776 3333332 34444444 222
Q ss_pred HHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhh
Q 040943 320 ATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELER 399 (950)
Q Consensus 320 ~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~s 399 (950)
.=||.-+..+...||.|-.- +..|.++|..=|||=-.=.+.++. +|.+-..+..++|+.|+-..++
T Consensus 347 -qile~sv~~l~~~lkDLd~~----------~~aLs~rld~qEqtL~~rL~e~~~---e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 347 -QILEDSVAELMRQLKDLDDH----------ILALSWRLDLQEQTLNLRLSEAKN---EWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred -HHHHHHHHHHHHHHHHHHHH----------HHHHhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 23566677777778877752 677888898888886655555554 8999999999999998877665
Q ss_pred H
Q 040943 400 K 400 (950)
Q Consensus 400 K 400 (950)
.
T Consensus 413 ~ 413 (531)
T PF15450_consen 413 H 413 (531)
T ss_pred H
Confidence 4
No 85
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=78.52 E-value=1.6e+02 Score=35.51 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 040943 5 YEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESI 84 (950)
Q Consensus 5 ~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~ 84 (950)
...++.+...+.....++..=.+-++.|......+-..+.+.+-.-..+-..+.+.+-..+.+-+..+.-=..+....+-
T Consensus 100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~ 179 (560)
T PF06160_consen 100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSE 179 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666677776666666666666666666666666554443333222222233333333
Q ss_pred HHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhH
Q 040943 85 IKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKK 151 (950)
Q Consensus 85 i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekk 151 (950)
...|..+-|-+. |.+.....+..+..+.+-|+.+-+++....+.
T Consensus 180 f~~lt~~GD~~~-----------------------A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~ 223 (560)
T PF06160_consen 180 FEELTENGDYLE-----------------------AREILEKLKEETDELEEIMEDIPKLYKELQKE 223 (560)
T ss_pred HHHHHHCCCHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334443333333 44455555556666666666666666554443
No 86
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.79 E-value=16 Score=36.97 Aligned_cols=95 Identities=25% Similarity=0.272 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHHhhhcc---hHHHHHHHHhhhHhHHHHHHHhhHHhh
Q 040943 796 EISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTT---SDALVIELRSENRKLLEDVLKLSSERE 872 (950)
Q Consensus 796 ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me~k~r~---se~~v~eLk~en~~l~~~~~~lssEr~ 872 (950)
-..++..+|+-.+....++++.+.-++++++..+.....+.-..|+..+. +.+-+..+-.+.+.|-.++..+++|++
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKE 83 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777788888888888888888888887777777765544 666677777788888888888999999
Q ss_pred hHHhhhhcccccccccch
Q 040943 873 NLLGFLGGLGDRVSKFSD 890 (950)
Q Consensus 873 ~Ll~~~~gl~d~i~~~s~ 890 (950)
+|-..+...-++|..+-.
T Consensus 84 ~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 84 NLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888888888877643
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.41 E-value=1.4e+02 Score=34.14 Aligned_cols=125 Identities=25% Similarity=0.315 Sum_probs=69.1
Q ss_pred HHHHHHHhHHHHHhh---HHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHhhhhHH
Q 040943 351 LAKLRNKLRSVEQMH---RDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEE 427 (950)
Q Consensus 351 l~kLr~Klr~LEq~H---r~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql~~qNeE 427 (950)
+.-|+.|+|.||.-- |.=+..|+.--.....+=.+| +.+|-.+|.+-.+-|..|..||..+..... -|.+|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~---rQQEE 235 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENR---RQQEE 235 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHH
Confidence 578888888887532 333455554333444443344 556788888888888888888877665533 23344
Q ss_pred HH-HHHHHHh-------------hHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHH
Q 040943 428 IS-VMLLELE-------------NDQEMLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKER 485 (950)
Q Consensus 428 ~s-~mllvl~-------------k~~E~le~S~r~Ql~lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeer 485 (950)
.. ++-.+++ .+...|..+-..|..|... -.+|+++-.++-.-|.-||.++..-|
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE----L~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE----LQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44 3333333 2222233333344443332 23556666666666666776666544
No 88
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.28 E-value=30 Score=36.52 Aligned_cols=98 Identities=23% Similarity=0.343 Sum_probs=67.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHH-------------HhhhcchHHHHHHHHh
Q 040943 789 MIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQL-------------EENLTTSDALVIELRS 855 (950)
Q Consensus 789 mI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~m-------------e~k~r~se~~v~eLk~ 855 (950)
+|=-|-++|..|..+...-+..+....+.-..+..-+..-+.+..+|..++ ..++..++.-+..|+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555554444444444444444444333 4677788999999999
Q ss_pred hhHhHHHHHHHhhHHhhhHHhhhhccccccc
Q 040943 856 ENRKLLEDVLKLSSERENLLGFLGGLGDRVS 886 (950)
Q Consensus 856 en~~l~~~~~~lssEr~~Ll~~~~gl~d~i~ 886 (950)
++.-|-.-+.++..||+.|.+-|++....+-
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886655443
No 89
>PRK11637 AmiB activator; Provisional
Probab=73.39 E-value=1.8e+02 Score=33.55 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=30.6
Q ss_pred hhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHh
Q 040943 276 NTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERE 326 (950)
Q Consensus 276 nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqE 326 (950)
....+.+..+..|+..-..|...++.|+.......+.+.+++....+|...
T Consensus 198 ~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 198 TLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666677777777776666666655555444443
No 90
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=72.61 E-value=2e+02 Score=33.73 Aligned_cols=86 Identities=29% Similarity=0.353 Sum_probs=69.5
Q ss_pred HHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhh-----hhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHH
Q 040943 127 QEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKL-----RERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHE 201 (950)
Q Consensus 127 qe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~-----~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~ 201 (950)
+..-+..|++=-++.-++|.+.++|--..=++..+-|+. ..-||+..-||-|-.++..||.+-.++-+..|-|-.
T Consensus 91 L~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~ 170 (561)
T KOG1103|consen 91 LDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKD 170 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888899999999998876655555554443 456899999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 040943 202 KLKDQFRTCKK 212 (950)
Q Consensus 202 kl~~qfr~skk 212 (950)
|+--|+-.-|+
T Consensus 171 Kl~~qLeeEk~ 181 (561)
T KOG1103|consen 171 KLEMQLEEEKK 181 (561)
T ss_pred HHHHHHHHHHH
Confidence 99988765554
No 91
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.33 E-value=12 Score=38.63 Aligned_cols=73 Identities=32% Similarity=0.442 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhc---hHHHHhhHHHhhHHHHHH
Q 040943 44 QEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFD---FNEKCRKLEEQNRVLVLA 116 (950)
Q Consensus 44 qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~---~~ek~~k~e~e~r~lvla 116 (950)
+..+.+.......+..-..++..+..-+.+|...+.+|...+-.|...+..|... ..+|+++++.|++.||-=
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455666666677777788888889999999999998888888765 468999999999999853
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.01 E-value=2.5e+02 Score=34.23 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhh
Q 040943 39 HLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALD 118 (950)
Q Consensus 39 q~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLd 118 (950)
...++.++..++..+..+......++..+..-.+.+...+.+=+..++- ..++..+....++.+...+...+.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~-------~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS-------EGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555554444444433332222222 223333333355555555555444
Q ss_pred h
Q 040943 119 E 119 (950)
Q Consensus 119 e 119 (950)
+
T Consensus 280 e 280 (650)
T TIGR03185 280 A 280 (650)
T ss_pred H
Confidence 4
No 93
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.49 E-value=2.7e+02 Score=34.35 Aligned_cols=237 Identities=21% Similarity=0.283 Sum_probs=129.9
Q ss_pred hhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHH
Q 040943 253 LSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLM 332 (950)
Q Consensus 253 LahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~ 332 (950)
...+++...--+.++.+++...+.+.+++......++.|++. ++.=..-+.+++-...++|++.. +..
T Consensus 316 ~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~-----------~~q~~~e~~~~~~~~~~le~~~~-l~~ 383 (594)
T PF05667_consen 316 KETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSS-----------LKQLEEELEEKEAENEELEEELK-LKK 383 (594)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345566667777888888877777777777775555555544 22222222233333333333332 111
Q ss_pred -----------hHHHHHHHHhhhc-CccchHHHHHHHhHH-HHHhhHHHHHhhhhhHHH---HhHhHHhhHHhhhhhhhh
Q 040943 333 -----------SLKELQEAQIQKA-GSSSSLAKLRNKLRS-VEQMHRDCSANLRAKEAE---WSSQMQQMDAEMNGYRSE 396 (950)
Q Consensus 333 -----------sLKElQEaqI~~a-gas~sl~kLr~Klr~-LEq~Hr~Cs~~LraKEaE---W~~Q~eKL~~el~~~~s~ 396 (950)
-+..||. .|..+ ..-..|+.-|.+.|. |...+|.--.....++.+ +-..+..+...+......
T Consensus 384 k~~~lL~d~e~ni~kL~~-~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e 462 (594)
T PF05667_consen 384 KTVELLPDAEENIAKLQA-LVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEE 462 (594)
T ss_pred HHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122221 12221 223344444544432 222222222222222222 335566777777888888
Q ss_pred hhhHHHHHHHHHHHHhh--------hhhH-HHHH----hhhhHHHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHhhhH
Q 040943 397 LERKDAALKELKMELED--------YHSL-TLQL----KMQNEEISVMLLELENDQEMLEKSLRCQRHLEEQAKQIESDS 463 (950)
Q Consensus 397 L~sKd~~i~eLq~ELe~--------c~s~-~~Ql----~~qNeE~s~mllvl~k~~E~le~S~r~Ql~lqeq~~q~E~~~ 463 (950)
+..|+..+++|..+++. .|-. |+.+ .=|+.|+.=++.--+ .+|...-.+..-+
T Consensus 463 ~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr--------------~lQkeiN~l~gkL 528 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTR--------------ELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 88999999999998887 2333 5543 223444442221111 1122111111111
Q ss_pred HHHHh----------hhhhHHHHhHHHHHHHHHhhhhhhHhhhhhhhHHHHHHHHHHHHHHHH
Q 040943 464 ERKLG----------EVSNALDIANLELAKEREKTASLSEVVESLDHIEEQRVLMEKELQKNK 516 (950)
Q Consensus 464 ~eqLe----------e~~~aL~~aqaelaeerEkvAsL~rriEsld~~Eeq~~lMQkELd~yK 516 (950)
...+- .++.+..+|+.-|+.=|+.-.+|...|+.-+.+..+..-|+.+++.-+
T Consensus 529 ~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 529 DRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTES 591 (594)
T ss_pred HhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 11111 156688899999999999999999999999999999988888888644
No 94
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=70.11 E-value=72 Score=37.87 Aligned_cols=80 Identities=26% Similarity=0.363 Sum_probs=51.7
Q ss_pred hHHHHhhHHHhhHHHHHHhhhhhh---------hchh--------HHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhc
Q 040943 99 FNEKCRKLEEQNRVLVLALDEANE---------KNID--------QEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKA 161 (950)
Q Consensus 99 ~~ek~~k~e~e~r~lvlaLde~~~---------~~~d--------qe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a 161 (950)
.-.|..+|+.|+|-|+-.||.--. ++-| .-.-|..++.||+|||..|+.++|.-.+-
T Consensus 206 LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek------ 279 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK------ 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 345788999999999999986322 1111 22346678999999999999999876542
Q ss_pred chhhhhhhHHHHhhHHhhHHHHHHhh
Q 040943 162 PKKLRERDDMLLKLEDENSKFENQLK 187 (950)
Q Consensus 162 ~ke~~~rddm~~klEeE~~~~e~qLk 187 (950)
++.--.==..+++||..++.+|+
T Consensus 280 ---~~qy~~Ee~~~reen~rlQrkL~ 302 (552)
T KOG2129|consen 280 ---LMQYRAEEVDHREENERLQRKLI 302 (552)
T ss_pred ---HHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111111345666666666554
No 95
>PRK11637 AmiB activator; Provisional
Probab=66.63 E-value=2.5e+02 Score=32.45 Aligned_cols=81 Identities=15% Similarity=0.249 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 040943 5 YEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESI 84 (950)
Q Consensus 5 ~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~ 84 (950)
-.+++.++.++..+..++.........+....+.--.+|..+..++..+.+++.....+|..+..-..+++..+......
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655554444444444444444444555555555555555555556655555555566666555555
Q ss_pred H
Q 040943 85 I 85 (950)
Q Consensus 85 i 85 (950)
+
T Consensus 126 l 126 (428)
T PRK11637 126 L 126 (428)
T ss_pred H
Confidence 5
No 96
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.25 E-value=74 Score=31.59 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=54.4
Q ss_pred hhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhh
Q 040943 293 NQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANL 372 (950)
Q Consensus 293 ~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~L 372 (950)
.+|++||++++.-++.=..--.++...+.+|-.+|.++....+++. .|+..+..|+
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~--------------~L~~el~~l~---------- 81 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVE--------------ELEQELEELQ---------- 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH----------
Confidence 3568888888888777666667777777888888888766444433 3444444443
Q ss_pred hhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhh
Q 040943 373 RAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELED 413 (950)
Q Consensus 373 raKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~ 413 (950)
.-.++.+-.|.-|...+.+|+.++..
T Consensus 82 ---------------~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 82 ---------------QRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred ---------------HHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44445555667777777777777664
No 97
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.90 E-value=1.9e+02 Score=30.75 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=82.6
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHH
Q 040943 28 LCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLE 107 (950)
Q Consensus 28 ~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e 107 (950)
-|.++|.++|.-..- --+-|.++|.=..+++......+..+..+.+.|..|.. -+.+..
T Consensus 10 af~~iK~YYndIT~~-----------------NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~e----pL~~a~ 68 (201)
T PF13851_consen 10 AFQEIKNYYNDITLN-----------------NLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSE----PLKKAE 68 (201)
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHH
Confidence 467788888865211 11234444444455555555556666666666655542 222223
Q ss_pred HhhHHHHH----------HhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHH
Q 040943 108 EQNRVLVL----------ALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLED 177 (950)
Q Consensus 108 ~e~r~lvl----------aLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEe 177 (950)
.+...|-- +|..+..+...++++++.++-|-+-|...+..-+..+-++-.+. -....||.+|..-
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf-----~~~i~evqQk~~~ 143 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF-----ESAIQEVQQKTGL 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 33222222 33333344444444444444444444444333333333322222 2334455555555
Q ss_pred hhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhh
Q 040943 178 ENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGD 241 (950)
Q Consensus 178 E~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~ed 241 (950)
.|.-++.+|. .|.+++++---|+...-.-...+=.++-.--..+..-|+|+.....|
T Consensus 144 kn~lLEkKl~-------~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~~ 200 (201)
T PF13851_consen 144 KNLLLEKKLQ-------ALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIKD 200 (201)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555553 44455555444544333222333333333333555555555554444
No 98
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=64.21 E-value=2.6e+02 Score=31.76 Aligned_cols=51 Identities=29% Similarity=0.333 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhh---hH---HHHHHHHHHHHhH
Q 040943 274 YDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTK---ET---FYKEMEYQATKLE 324 (950)
Q Consensus 274 ~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~K---et---~~kE~ey~~~kLE 324 (950)
|-|---+.+|-.|+|..|-.+----.+.||.+|-.- .- +-+|++....|||
T Consensus 138 lA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Kle 194 (330)
T KOG2991|consen 138 LATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLE 194 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 333444778888888888888888889999887432 22 2345555555544
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.74 E-value=3.5e+02 Score=33.11 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=55.4
Q ss_pred HhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHH
Q 040943 259 RRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQ 338 (950)
Q Consensus 259 ~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQ 338 (950)
+-.-++.++.++....+++-.+.......++.+..+++.=-+.+|...|.----..+++-++..++.+-.+....++.+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555555555554444555555554333344677777778888888888777776
Q ss_pred HHHhhhcCccchHHHHHHHhHHH
Q 040943 339 EAQIQKAGSSSSLAKLRNKLRSV 361 (950)
Q Consensus 339 EaqI~~agas~sl~kLr~Klr~L 361 (950)
.-.+.=+=++-.+..+++.+...
T Consensus 290 ~~~~p~~l~~~ll~~~~~q~~~e 312 (650)
T TIGR03185 290 ADPLPLLLIPNLLDSTKAQLQKE 312 (650)
T ss_pred cccCCHhhhHHHHHHHHHHHHHH
Confidence 43322222333344444444443
No 100
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.54 E-value=1.8e+02 Score=29.68 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=42.8
Q ss_pred HhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHH
Q 040943 267 VSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQE 339 (950)
Q Consensus 267 ~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQE 339 (950)
+..+|..+++++---.-.|.++..++.. +..++..|..+...+...+-.+.++..+...++....+++.
T Consensus 65 L~~Lk~~~~~~v~~L~h~keKl~~~~~~----~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 65 LLKLKKKIGKTVQILTHVKEKLHFLSEE----LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433 67777777777777777777777777777777777777763
No 101
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.86 E-value=1.7e+02 Score=29.51 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=74.8
Q ss_pred HHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhH
Q 040943 172 LLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQ 251 (950)
Q Consensus 172 ~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnq 251 (950)
+.++|.++..+..++.=...++--+++.+..+.+.+-.+-+-- ..=..|=-.|..|+-.||.-...+.....+|.=-+.
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444444444444444333222110 000145557888888888888888888888888888
Q ss_pred HhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHh
Q 040943 252 ALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAK 285 (950)
Q Consensus 252 aLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ear 285 (950)
..-|-+-+.+.||.+....=..|+-+-..|.+++
T Consensus 109 ~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999998875
No 102
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=62.20 E-value=2.3e+02 Score=32.82 Aligned_cols=118 Identities=25% Similarity=0.271 Sum_probs=84.2
Q ss_pred HHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhhhHhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q 040943 458 QIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVE-SLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQM 536 (950)
Q Consensus 458 q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL~rriE-sld~~Eeq~~lMQkELd~yKEMLEeSSr~Ql~Lkeq~lq~ 536 (950)
+....+...+.....-|+.-+.++..-.++|.+--..|- +|+..-++-...+.+|..-++-..++|.+..
T Consensus 227 ~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~--------- 297 (359)
T PF10498_consen 227 QHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVS--------- 297 (359)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---------
Confidence 334455566677777778888888888888888777776 6777777777777777766666666666655
Q ss_pred hhhhHHHHHHHHhHHhhhhHHHHhhhhccchhHHHHHHHHHHHHHHHHHHH
Q 040943 537 ESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKSIAERLKFELE 587 (950)
Q Consensus 537 E~dlKekL~e~~daLD~AnsELaek~~E~s~~Efel~~wKs~~e~LK~~le 587 (950)
.+-..|.++.+.|+....++.++-.-.+-- .-|..-|+++-+||.++-
T Consensus 298 --~~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 298 --ERTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQEIK 345 (359)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 555668889999999999888875443322 446677888888887654
No 103
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=61.13 E-value=4.5e+02 Score=33.58 Aligned_cols=199 Identities=20% Similarity=0.221 Sum_probs=96.3
Q ss_pred HHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHH
Q 040943 112 VLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKE 191 (950)
Q Consensus 112 ~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~E 191 (950)
++..|.-.+..-..-+++-+|.|..-..|--++-.-++.-|.-.+ .+.-..--+..+......+...+.|-..
T Consensus 503 eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLd-------wIls~~~SLqDv~s~~sEIK~~f~~~ss 575 (769)
T PF05911_consen 503 ELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLD-------WILSNCFSLQDVSSMRSEIKKNFDGDSS 575 (769)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-------HHHHccchHHHHHHHHHHHHHhhhhccc
Confidence 333333333444445556666666654444444444444444443 2333333444466666677777777544
Q ss_pred Hh--------------hhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHH
Q 040943 192 QF--------------KHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEE 257 (950)
Q Consensus 192 qf--------------~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEE 257 (950)
+= .+|++=++ .....|.+-+.+-...-|.|-+++..|-.-...+..|+.+|...+..=.--|
T Consensus 576 ~e~E~~~~dea~~~~~~el~eelE----~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E 651 (769)
T PF05911_consen 576 SEAEINSEDEADTSEKKELEEELE----KLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAE 651 (769)
T ss_pred ccccccchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11111111 2223344455555555666667777776666677777777775554333222
Q ss_pred HHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHH
Q 040943 258 SRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLER 325 (950)
Q Consensus 258 s~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEq 325 (950)
+.-+........+.+++..+-++-....+++..|. .||..=|..-+.-.+=+.+++|++.+-.+
T Consensus 652 ~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le----~Ele~er~~~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 652 TQLKAMKESYESLETRLKDLEAEAEELQSKISSLE----EELEKERALSEELEAKCRELEEELERMKK 715 (769)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence 22222222222233333333333444444444443 33555555555555556666666665543
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=60.30 E-value=2.1e+02 Score=29.36 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.9
Q ss_pred HHHHHhHHHHHhhHHHHHhhhhhHHH
Q 040943 353 KLRNKLRSVEQMHRDCSANLRAKEAE 378 (950)
Q Consensus 353 kLr~Klr~LEq~Hr~Cs~~LraKEaE 378 (950)
+++.+...||..+.+|..-|..+|++
T Consensus 91 ~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 91 KKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34458888999999999999999988
No 105
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.83 E-value=15 Score=30.82 Aligned_cols=45 Identities=31% Similarity=0.438 Sum_probs=34.1
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhh
Q 040943 261 KYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTK 309 (950)
Q Consensus 261 K~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~K 309 (950)
|-||....-+|++|+++-++|.-....-+.|.++ |..|+.-+.+|
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~ae----v~~L~~kl~~k 45 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAE----VQELKEKLQMK 45 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhcCC
Confidence 3467777889999999999998888777777766 66666655543
No 106
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=57.75 E-value=2.6e+02 Score=29.74 Aligned_cols=167 Identities=23% Similarity=0.311 Sum_probs=85.3
Q ss_pred hchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhc-C--ccc---------hHHHHHHHhHHH
Q 040943 294 QRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKA-G--SSS---------SLAKLRNKLRSV 361 (950)
Q Consensus 294 ~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~a-g--as~---------sl~kLr~Klr~L 361 (950)
-|..-|-.|++-+ .++.+++..|.-||.=|...-+. |+.-|+.. | +-. =+..||..+|..
T Consensus 9 ar~~ki~~L~n~l-------~elq~~l~~l~~ENk~Lk~lq~R-q~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~ 80 (194)
T PF15619_consen 9 ARLHKIKELQNEL-------AELQRKLQELRKENKTLKQLQKR-QEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKS 80 (194)
T ss_pred hhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666654 35566667777777766654433 44444443 1 111 144677777777
Q ss_pred HHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHH-HHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHhhHHH
Q 040943 362 EQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAA-LKELKMELEDYHSLTLQLKMQNEEISVMLLELENDQE 440 (950)
Q Consensus 362 Eq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~-i~eLq~ELe~c~s~~~Ql~~qNeE~s~mllvl~k~~E 440 (950)
....+.-...+|.++++ +.++.+.+..+..-...|+-+ ..+|+..|. ....
T Consensus 81 q~~~r~~~~klk~~~~e----l~k~~~~l~~L~~L~~dknL~eReeL~~kL~------------------------~~~~ 132 (194)
T PF15619_consen 81 QEQERELERKLKDKDEE----LLKTKDELKHLKKLSEDKNLAEREELQRKLS------------------------QLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCchhHHHHHHHHH------------------------HHHH
Confidence 77777777777777744 334445555444333322211 223333322 1222
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhHHHHHhhhhhHHHHhHHHHHHHHHhhhhhhHhhh
Q 040943 441 MLEKSLRCQRHLEEQAKQIESDSERKLGEVSNALDIANLELAKEREKTASLSEVVE 496 (950)
Q Consensus 441 ~le~S~r~Ql~lqeq~~q~E~~~~eqLee~~~aL~~aqaelaeerEkvAsL~rriE 496 (950)
-+..+..-=..|..++.-...+|..+|..-......++.++..-.+.|..|..++.
T Consensus 133 ~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 133 KLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233455555555566666666666666666655554444444444443
No 107
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.63 E-value=4.6e+02 Score=32.50 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=40.1
Q ss_pred HHhhHHhhHHHHHHhhhhHH----HhhhHHHHHHHHHHHHHhhhh-hhhHhHh----HHhhhhh---hhhhhhhhhhhhh
Q 040943 172 LLKLEDENSKFENQLKWKKE----QFKHLEEAHEKLKDQFRTCKK-EWEHERS----TLLDAIS---SLQTSLDSQTRIS 239 (950)
Q Consensus 172 ~~klEeE~~~~e~qLkwk~E----qf~hLeeah~kl~~qfr~skk-EW~~ers----~LlDeI~---sLq~~LdSqtr~~ 239 (950)
+.|.-...+.|+..+.+... +|--.+|. -||.+|| +|..-== +|.+.-+ +....-+.-.|=.
T Consensus 507 I~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl------ifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEi 580 (594)
T PF05667_consen 507 IEKILSDTRELQKEINSLTGKLDRTFTVTDEL------IFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREI 580 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 36666677777777777766 44444443 5787776 5543322 2222222 3333344555667
Q ss_pred hhhHHHHHH
Q 040943 240 GDLQNRLQL 248 (950)
Q Consensus 240 edlq~rl~m 248 (950)
.||+.|++.
T Consensus 581 rdLe~qI~~ 589 (594)
T PF05667_consen 581 RDLEEQIDT 589 (594)
T ss_pred HHHHHHHHH
Confidence 777777764
No 108
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=57.43 E-value=2.5e+02 Score=29.37 Aligned_cols=139 Identities=22% Similarity=0.286 Sum_probs=80.5
Q ss_pred hhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHh
Q 040943 95 LRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLK 174 (950)
Q Consensus 95 L~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~k 174 (950)
+++++.+-+.++++-.+-|-.++.+.........+.+......--.++.-+...+..+.+.+.+|...-... ++|.-
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g-~edLA-- 86 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG-REDLA-- 86 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHH--
Confidence 555566666666666655556666555555555555555555555555555555555555555554442211 22221
Q ss_pred hHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhh
Q 040943 175 LEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALS 254 (950)
Q Consensus 175 lEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLa 254 (950)
+++-..+..+-+.+..|+..++.++...+.|...+.
T Consensus 87 -------------------------------------r~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~------- 122 (221)
T PF04012_consen 87 -------------------------------------REALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLE------- 122 (221)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 255556666677777888888888888777777665
Q ss_pred hHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHH
Q 040943 255 HEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQ 287 (950)
Q Consensus 255 hEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ 287 (950)
-++..+.+++..-+.+.+.+.-++.+
T Consensus 123 -------~l~~kl~e~k~k~~~l~ar~~~a~a~ 148 (221)
T PF04012_consen 123 -------ELEAKLEELKSKREELKARENAAKAQ 148 (221)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444555555555555555544443
No 109
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=56.36 E-value=4.2e+02 Score=31.71 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhHHHHhHHHHHHHHHHH
Q 040943 727 NQKIDDLLQLVRSLEERFNSSLNSFSSQLAGKQAEISLAIEA 768 (950)
Q Consensus 727 D~~IddLq~~V~slEq~f~~sl~sfs~~laEkq~Ei~~~~~a 768 (950)
+-.+.-++.+..++.......-.+++.++.++-.||..++.+
T Consensus 336 e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~ 377 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQ 377 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 555666777888888888888889999999998888888776
No 110
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.02 E-value=2.8e+02 Score=29.48 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHhhhhhhHHHHHHhhhhhhhhhhchHHHHhh----HHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhh
Q 040943 74 LKRSLTEKESIIKCLGAANDKLRFDFNEKCRK----LEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKG 143 (950)
Q Consensus 74 L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k----~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~ 143 (950)
+..+|.++-.-+.++.++|+.|+..+.+.+.. -....+.+...+.....++..+...+...+.+|+..+.
T Consensus 18 ~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 18 VNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888888777776651 22233334444444444444444444444444444333
No 111
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=54.90 E-value=3.6e+02 Score=30.51 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=56.2
Q ss_pred HHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhh
Q 040943 171 MLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCN 250 (950)
Q Consensus 171 m~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCn 250 (950)
.+..+-+.-..++.||.--.+.|..+++++.|=-+-|-.-|+|-+. +-..|..| ... ...++++.+-||
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emek----m~Kk~kkl----EKE---~~~~k~k~e~~n 271 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEK----MSKKIKKL----EKE---NQTWKSKWEKSN 271 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHH----HHH---HHHHHHHHHHHh
Confidence 4444555667788899999999999999999988888888876432 22222222 222 124677888899
Q ss_pred HHhhhHHHHhhHHHH
Q 040943 251 QALSHEESRRKYLEV 265 (950)
Q Consensus 251 qaLahEEs~rK~lE~ 265 (950)
.+|.-.-.-|..+.-
T Consensus 272 ~~l~~m~eer~~~~~ 286 (309)
T PF09728_consen 272 KALIEMAEERQKLEK 286 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988775555555554
No 112
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.73 E-value=45 Score=35.62 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=48.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHHHHHh
Q 040943 788 LMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKL 867 (950)
Q Consensus 788 mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~~~~l 867 (950)
..+-++|.++..++.+|.....+ ....+..|.+++..++..+.+|+.+|..|-..+..+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNT---------------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777666666554433 334444555566667777777888888888887777
Q ss_pred hHHhhhHHhhhhcccc
Q 040943 868 SSERENLLGFLGGLGD 883 (950)
Q Consensus 868 ssEr~~Ll~~~~gl~d 883 (950)
.++.+.|=..+..+-+
T Consensus 152 ~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 152 QKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776555555444
No 113
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.44 E-value=66 Score=28.75 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=42.4
Q ss_pred HHHHHHHhhhhhHhhhHHHHhHHHHH---HHHHHHHHHHHHHHHHhhhhhhHHHH
Q 040943 16 EKLRADCKSKSELCGNLKKAHNEHLL---KIQEANLKVEKQARELNEKTEEISEV 67 (950)
Q Consensus 16 EkL~ae~r~K~~~~d~Lkk~~~eq~~---~~qEa~~k~e~~~~E~~~k~eEi~~~ 67 (950)
..|.++.|+|-.+-+-|.+++..+++ ++|+|......+.+++...-.++.++
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999998887664 78898888888888877777777554
No 114
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=53.61 E-value=4.6e+02 Score=31.37 Aligned_cols=207 Identities=20% Similarity=0.256 Sum_probs=110.8
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHH
Q 040943 180 SKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESR 259 (950)
Q Consensus 180 ~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~ 259 (950)
..+.++|.-...-++.=...+...+..|=...-+|+.++..|-.... ....+=...+...|++..++++...+.+.
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~--- 233 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESE--- 233 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHH---
Confidence 45555555555545433333444455666666678888888877777 44566677888999999999988887773
Q ss_pred hhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHh-hhhh--hh----HHHHHHHHHHHHhHHhhHHHHH
Q 040943 260 RKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRH-SLGT--KE----TFYKEMEYQATKLERENQELLM 332 (950)
Q Consensus 260 rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~-sL~~--Ke----t~~kE~ey~~~kLEqEN~el~~ 332 (950)
++++.++|.+ +-.-.++ .++=|+.|+. ++.. .. +-+.++......+..+++.|..
T Consensus 234 ----~~el~~Yk~k---A~~iLq~-----------kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~ 295 (511)
T PF09787_consen 234 ----EAELQQYKQK---AQRILQS-----------KEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLER 295 (511)
T ss_pred ----HHHHHHHHHH---HHHHhcC-----------HHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHH
Confidence 3444444422 1111111 2555777777 3331 10 2356677777777777888877
Q ss_pred hHHHHHHHHhhhcCc--cchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHh---hHHhhhhhhhh----hhhHHHH
Q 040943 333 SLKELQEAQIQKAGS--SSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQ---MDAEMNGYRSE----LERKDAA 403 (950)
Q Consensus 333 sLKElQEaqI~~aga--s~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eK---L~~el~~~~s~----L~sKd~~ 403 (950)
.+..+. ++++...+ ......++...+.++.+..-=... |++.+....- +.+++..+.+. +.-|+..
T Consensus 296 Qi~~l~-~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E 370 (511)
T PF09787_consen 296 QIEQLR-AELQDLEAQLEGEQESFREQPQELSQQLEPELTT----EAELRLYYQELYHYREELSRQKSPLQLKLKEKESE 370 (511)
T ss_pred HHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 775554 34433322 222334444445554433222111 4333332211 23333333333 3335556
Q ss_pred HHHHHHHHhh
Q 040943 404 LKELKMELED 413 (950)
Q Consensus 404 i~eLq~ELe~ 413 (950)
|..|...|-+
T Consensus 371 ~q~lr~~l~~ 380 (511)
T PF09787_consen 371 IQKLRNQLSA 380 (511)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 115
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=53.49 E-value=6.4e+02 Score=32.94 Aligned_cols=223 Identities=22% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHh----hhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh
Q 040943 2 ERIYEELDEIKAENEKLRADCKSKSELC----GNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRS 77 (950)
Q Consensus 2 e~v~eEldeakaeiEkL~ae~r~K~~~~----d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~ 77 (950)
...+.|....++.++.++.+-|.-...+ +.|.-..++|-...|+++...+++..|+.+..-.=.. |+.-...
T Consensus 336 ~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q----~eka~~~ 411 (980)
T KOG0980|consen 336 EQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQ----LEKAQVL 411 (980)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred hhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhh
Q 040943 78 LTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAES 157 (950)
Q Consensus 78 L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek 157 (950)
..+.+--+--.-.-..+++ ++|..+..+.-.|....+..-...--.++.+--...++..|-..+-.....-..++
T Consensus 412 ~ee~e~~~l~~e~ry~klk----ek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~- 486 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLK----EKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAE- 486 (980)
T ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhh
Q 040943 158 EAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTR 237 (950)
Q Consensus 158 ~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr 237 (950)
++....-+|+..|+.|...+..++.-.+....|+.++|--...+ +...|-++.|
T Consensus 487 -----~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~---------------------l~~~l~~KD~ 540 (980)
T KOG0980|consen 487 -----TKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQ---------------------LEDLLKQKDR 540 (980)
T ss_pred -----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------------------HHHHHHhhHH
Q ss_pred hhhhhHHHHHHhhHHhhhHHHHhhHHHHHHh
Q 040943 238 ISGDLQNRLQLCNQALSHEESRRKYLEVQVS 268 (950)
Q Consensus 238 ~~edlq~rl~mCnqaLahEEs~rK~lE~e~S 268 (950)
-+..+..|+ +|-.-+.+|++.|
T Consensus 541 ~~~~~~~~~---------~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 541 LAAELVARE---------EEREALRLEAERS 562 (980)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHhh
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.04 E-value=3.5e+02 Score=30.75 Aligned_cols=117 Identities=22% Similarity=0.224 Sum_probs=66.7
Q ss_pred hHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhh----hhhhchHHH
Q 040943 27 ELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAAND----KLRFDFNEK 102 (950)
Q Consensus 27 ~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aand----kL~~~~~ek 102 (950)
.+++||+..-..++.-++.-...+.+. ..-+..+.+...+....|..+-.-++.+.+.=+ ..-....++
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~-------~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~ 212 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKE-------LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEK 212 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHH
Confidence 456999999999988888776654443 333444444444455555555444444443311 112234455
Q ss_pred HhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhh
Q 040943 103 CRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQK 150 (950)
Q Consensus 103 ~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ek 150 (950)
+.....+......-+++.+.........|....+.+..+.+.+...++
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666655555555555555554
No 117
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.48 E-value=2.7e+02 Score=28.23 Aligned_cols=106 Identities=24% Similarity=0.347 Sum_probs=54.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhh
Q 040943 31 NLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQN 110 (950)
Q Consensus 31 ~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~ 110 (950)
.||-.-..-..+..++..++-.+.++..++..+|..+.. -|..|. ..+.++++.-
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~---------------------K~~~lE----~eld~~~~~l 58 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK---------------------KNQQLE----EELDKLEEQL 58 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH----HHHHHHHHHH
Confidence 344444444455555555555555666666666654433 222222 3333444444
Q ss_pred HHHHHHhhhhhhhch---hHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhc
Q 040943 111 RVLVLALDEANEKNI---DQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKA 161 (950)
Q Consensus 111 r~lvlaLde~~~~~~---dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a 161 (950)
.....+++++..... .+...|-..-++++...+-|.....|.-+++.+|..
T Consensus 59 ~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 59 KEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEH 112 (143)
T ss_pred HHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455555555544332 344555555566666666666655555555555443
No 118
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=51.87 E-value=3.2e+02 Score=30.79 Aligned_cols=132 Identities=19% Similarity=0.229 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhH
Q 040943 3 RIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKE 82 (950)
Q Consensus 3 ~v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKE 82 (950)
..+.+++..+.+-..+-.++|.|+.--|=..+--..- . ...+.+ -.+|+..+.+....|...+..-+
T Consensus 195 ~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~-~------~~~e~l------f~~eL~k~~~~~~~l~~~~~~Q~ 261 (337)
T cd09234 195 RILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTT-G------GDMEDL------FKEELKKHDQLVNLIEQNLAAQE 261 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhc-c------hhHHHH------HHHHHHHhhhHHHHHHHHHHHHH
Confidence 4667777777777777777777654332111111100 0 012223 34578889999999999999999
Q ss_pred HHHHHhhhhhhhhhh---chHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhh
Q 040943 83 SIIKCLGAANDKLRF---DFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSA 147 (950)
Q Consensus 83 s~i~hL~aandkL~~---~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~ 147 (950)
.++..|-.+|.++.. ...+-...++.=...|..|.+.-.+.....++-..+|..-...+.+++..
T Consensus 262 ~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~~~~~ 329 (337)
T cd09234 262 NILKALTEANAKYAPVRKALSETKQKRESTISSLIASYEAYEDLLKKSQKGIDFYKKLEGNVSKLLQR 329 (337)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998842 21334566666666777777777777777777788887776666655543
No 119
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=51.69 E-value=7.7e+02 Score=33.33 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh--hhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhh
Q 040943 3 RIYEELDEIKAENEKLRADCKS--KSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTE 80 (950)
Q Consensus 3 ~v~eEldeakaeiEkL~ae~r~--K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~e 80 (950)
.+.++|++++.++.....+|.. ++=+-.+.+. --.+.-+.+.+..++-+.+..+-+++.-+++.+..+.-++..
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke----~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQREQKALLQHEQKE----VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666664 1111122222 122333344444444445555555665555555555444444
Q ss_pred hHHHHHHhhhhhhhhhhc
Q 040943 81 KESIIKCLGAANDKLRFD 98 (950)
Q Consensus 81 KEs~i~hL~aandkL~~~ 98 (950)
=.+.-+-|-++++-.++.
T Consensus 541 v~~~rk~le~~~~d~~~e 558 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAE 558 (1317)
T ss_pred HHHHHHHHHHhhhhhhhh
Confidence 444455555555555533
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=49.63 E-value=6.1e+02 Score=31.59 Aligned_cols=62 Identities=11% Similarity=0.336 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhh
Q 040943 193 FKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALS 254 (950)
Q Consensus 193 f~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLa 254 (950)
+++|.-=......+++...--|...-..|.+++++|....+.-++....|++.|.-+...++
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333334444444566666777788888888888777777777777765544444
No 121
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.54 E-value=3.3e+02 Score=29.29 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=29.9
Q ss_pred hhHHhhhHHhhhhcccccccccchhhHHHHHHHHHHHhhccc--ccccccc
Q 040943 867 LSSERENLLGFLGGLGDRVSKFSDEDMQLMEMLGRLVQSLDS--KSGLVLK 915 (950)
Q Consensus 867 lssEr~~Ll~~~~gl~d~i~~~s~~D~~Lm~~L~~~~q~~d~--~~g~~~~ 915 (950)
+..||..=++++..+ +.+.|..+.+.+|+++.-+.. .+|+.+.
T Consensus 125 ~~~eR~~Rl~~L~~~------l~~~dv~~~ek~r~vlea~~~E~~yg~~i~ 169 (251)
T PF11932_consen 125 LLEERQERLARLRAM------LDDADVSLAEKFRRVLEAYQIEMEYGRTIE 169 (251)
T ss_pred ChHHHHHHHHHHHHh------hhccCCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 445677766666665 456788888999999877765 5666544
No 122
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=49.36 E-value=4.7e+02 Score=30.18 Aligned_cols=223 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhHHHHHHHHhHHhhhhHHHHhhhhccchhHHHHHHHHH
Q 040943 498 LDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKAKQMESDSKRKLQEATDALDIANSELAEKTSEGHQIEFELWIWKS 577 (950)
Q Consensus 498 ld~~Eeq~~lMQkELd~yKEMLEeSSr~Ql~Lkeq~lq~E~dlKekL~e~~daLD~AnsELaek~~E~s~~Efel~~wKs 577 (950)
+..+.++...|..+++.|| .--.-|.+-.-+|-.++-.+..+.-.-
T Consensus 29 ~~sL~qen~~Lk~El~~ek----------------------~~~~~L~~e~~~lr~~sv~~~~~aEqE------------ 74 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEK----------------------ARCKHLQEENRALREASVRIQAKAEQE------------ 74 (310)
T ss_pred HHHHHHHhHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040943 578 IAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLE-ERDSRISKFQQQILSLEQDLKLKALEAASNARME 656 (950)
Q Consensus 578 ~~e~LK~~leEn~~lrreleaSLLaqvE~ee~lkqEke~L~~~Le-E~~~~i~~lq~qi~~lE~~lk~k~l~aa~~ak~E 656 (950)
.-=+-.+|+.++.. ++++++.|...++ |-++-+++|++++..|=+
T Consensus 75 ---------------EE~isN~LlKkl~~---l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~---------------- 120 (310)
T PF09755_consen 75 ---------------EEFISNTLLKKLQQ---LKKEKETLALKYEQEEEFLTNDLSRKLNQLRQ---------------- 120 (310)
T ss_pred ---------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q ss_pred hhhhhHHHHHHHhh-hhhhhhhhHHHHHHHHhhhhh--hhhHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhhhHHHH
Q 040943 657 TAMSFEIEKQRFSQ-ITKEKDEILEDLQRQIGWLEE--ESLRRELESSLLTQICAERSFEHEKESLIQLLEEKNQKIDDL 733 (950)
Q Consensus 657 ~a~s~~~Ek~~L~q-i~~EKd~~IddLQk~I~~LEq--Esl~rELe~A~lak~eaErs~e~EKe~liqiv~EKD~~IddL 733 (950)
||-.|-+ +.+|...+++-|++.|.-|+- .++..+|+-=.-.|++-|.++++|-+.++ --=..+++.|
T Consensus 121 -------EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lv---N~L~Kqm~~l 190 (310)
T PF09755_consen 121 -------EKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALV---NRLWKQMDKL 190 (310)
T ss_pred -------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhHHH------------HhHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHhHHHHH
Q 040943 734 LQLVRSLEERFNSSLNSFSSQL------------AGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEIS 798 (950)
Q Consensus 734 q~~V~slEq~f~~sl~sfs~~l------------aEkq~Ei~~~~~a~eki~~ae~La~leieeK~mmI~ElE~ei~ 798 (950)
-..=+.|+..+........+.- ....+-|..|+.=+..+..-=.-+.-+.-.|---++.=|..|.
T Consensus 191 ~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ir 267 (310)
T PF09755_consen 191 EAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIR 267 (310)
T ss_pred HHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 123
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.12 E-value=3e+02 Score=27.96 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=11.3
Q ss_pred hhHHHHHHhhhhhhhhhhhHHHHHH
Q 040943 260 RKYLEVQVSEFRTHYDNTFAEYQDA 284 (950)
Q Consensus 260 rK~lE~e~Se~K~~~~nv~~e~~ea 284 (950)
++-.+..+..+...|.+...++.+.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 124
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.03 E-value=7.2e+02 Score=32.27 Aligned_cols=113 Identities=23% Similarity=0.307 Sum_probs=72.0
Q ss_pred hhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHH
Q 040943 274 YDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAK 353 (950)
Q Consensus 274 ~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~k 353 (950)
.-+|-....-.|..|+.++.+||-.|+..-+ +..-+||.-..+.+|=+|-|+|...||-.|-|.-. ++.-.+-
T Consensus 460 l~Dvr~~~tt~kt~ie~~~~q~e~~isei~q----lqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~---~~~~~s~ 532 (1118)
T KOG1029|consen 460 LQDVRVDITTQKTEIEEVTKQRELMISEIDQ----LQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE---TTQRKSE 532 (1118)
T ss_pred hhhheeccchHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC---cchHHHH
Confidence 3344445556788899999999988877654 45568999999999999999999999999876433 3333444
Q ss_pred HHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhh
Q 040943 354 LRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSEL 397 (950)
Q Consensus 354 Lr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L 397 (950)
|.-.|+.=+-+-+..-+.|-.-+-|-.+.+ ++||.|.-++
T Consensus 533 L~aa~~~ke~irq~ikdqldelskE~esk~----~eidi~n~ql 572 (1118)
T KOG1029|consen 533 LEAARRKKELIRQAIKDQLDELSKETESKL----NEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHH
Confidence 555555444444443333333333333333 4444444443
No 125
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.50 E-value=5.7e+02 Score=30.96 Aligned_cols=274 Identities=20% Similarity=0.234 Sum_probs=150.0
Q ss_pred hhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHh
Q 040943 95 LRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLK 174 (950)
Q Consensus 95 L~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~k 174 (950)
|.+....+|..|..+--.++. ...-+.+..+.....-+.+.+= .+|.+.+...++++..
T Consensus 58 l~Ges~~~f~~w~~~~~~i~~------~~~~~ie~~l~~ae~~~~~~~f---------------~~a~~~~~~~~~~l~~ 116 (569)
T PRK04778 58 LTGQSEEKFEEWRQKWDEIVT------NSLPDIEEQLFEAEELNDKFRF---------------RKAKHEINEIESLLDL 116 (569)
T ss_pred CCcccHHHHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHHHHH
Confidence 778888899999988777653 2333344444433333333321 2344455555566666
Q ss_pred hHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhh
Q 040943 175 LEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALS 254 (950)
Q Consensus 175 lEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLa 254 (950)
.|+....+.+.| .+|-+.+++-+......++-...=|.+|++.=.++=..++.
T Consensus 117 ~e~~~~~i~~~l-------~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~-------------------- 169 (569)
T PRK04778 117 IEEDIEQILEEL-------QELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDE-------------------- 169 (569)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHH--------------------
Confidence 666666655554 44444444444444444444444444555532222221111
Q ss_pred hHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhH
Q 040943 255 HEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSL 334 (950)
Q Consensus 255 hEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sL 334 (950)
=|.+=.-+|.+++.|..- +--++|..|+-.+..|... +..|...+..=-.+|+++.-.+ =....+|..--
T Consensus 170 -le~~l~~~e~~f~~f~~l--~~~Gd~~~A~e~l~~l~~~----~~~l~~~~~~iP~l~~~~~~~~---P~ql~el~~gy 239 (569)
T PRK04778 170 -LEKQLENLEEEFSQFVEL--TESGDYVEAREILDQLEEE----LAALEQIMEEIPELLKELQTEL---PDQLQELKAGY 239 (569)
T ss_pred -HHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 111111233333333322 1235788888888887655 7777777766666666665333 12234444444
Q ss_pred HHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHH-HHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhh
Q 040943 335 KELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEA-EWSSQMQQMDAEMNGYRSELERKDAALKELKMELED 413 (950)
Q Consensus 335 KElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEa-EW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~ 413 (950)
+++.+.+ =...--.+-..+..|..-..+|...|..-+. .-...+..+...||.+-..|+.=-.+...+......
T Consensus 240 ~~m~~~g-----y~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~ 314 (569)
T PRK04778 240 RELVEEG-----YHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDT 314 (569)
T ss_pred HHHHHcC-----CCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4444322 1111112344555555555555555544332 235678888899999999999888888888888888
Q ss_pred hhhHHHHHhhhhHHHHHH
Q 040943 414 YHSLTLQLKMQNEEISVM 431 (950)
Q Consensus 414 c~s~~~Ql~~qNeE~s~m 431 (950)
+...+..+.-+|.+...=
T Consensus 315 l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877776666655433
No 126
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.56 E-value=1.9e+02 Score=26.39 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=38.2
Q ss_pred hhhhhchHHHHhhHHHhhHHHHHHhhhhhh-hchhHHHHHHhHHHHHhhhhhhhhhhhhHh
Q 040943 93 DKLRFDFNEKCRKLEEQNRVLVLALDEANE-KNIDQEQKVNVFKAEIEGLKGLLSASQKKC 152 (950)
Q Consensus 93 dkL~~~~~ek~~k~e~e~r~lvlaLde~~~-~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc 152 (950)
..++..|+.=..-+++.+..|+..|+.... +...+..++..+...++++.+.....+.-+
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556677777778887776543 445666667777777777766666655544
No 127
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=47.08 E-value=6.8e+02 Score=31.41 Aligned_cols=299 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred hchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhh--hhhhcchhhhhhhHHHHh
Q 040943 97 FDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAE--SEAKAPKKLRERDDMLLK 174 (950)
Q Consensus 97 ~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eae--k~a~a~ke~~~rddm~~k 174 (950)
+....+.+.-.+|++.|.--|.+-|....+.+-+=.....++++++.. ...-|..++ -+.....--+.-.+....
T Consensus 110 ~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~---~~~~~~~ie~~a~~~e~~~~q~~~e~e~~ 186 (629)
T KOG0963|consen 110 AELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKL---EQLLEIFIENAANETEEKLEQEWAEREAG 186 (629)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhh
Q 040943 175 LEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALS 254 (950)
Q Consensus 175 lEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLa 254 (950)
|=+++..+.+|+.-....-+-|+-||+.-+.+.-..+--.+.|=....++|+-+=+.|+--.-++.+++.+-..=.+.++
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHhhHH---------------HHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHH
Q 040943 255 HEESRRKYL---------------EVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQ 319 (950)
Q Consensus 255 hEEs~rK~l---------------E~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~ 319 (950)
.--+-.+.= +-+++.+-.-+.++-+--... ++....+ |.+|=.-+.+|.+.+.||+.+
T Consensus 267 ~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e---~e~~~~q----I~~le~~l~~~~~~leel~~k 339 (629)
T KOG0963|consen 267 KANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE---REKHKAQ----ISALEKELKAKISELEELKEK 339 (629)
T ss_pred hhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHhhHHHHHhHHHHHHHHhh-hcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhh---
Q 040943 320 ATKLERENQELLMSLKELQEAQIQ-KAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRS--- 395 (950)
Q Consensus 320 ~~kLEqEN~el~~sLKElQEaqI~-~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s--- 395 (950)
+..- -+-.++..-|.=|+.-..+ +++|+- ..+.=+.|-+| |-+|+.-...+...|..-.+++-.
T Consensus 340 L~~~-sDYeeIK~ELsiLk~ief~~se~a~~-~~~~~~~lesl----------Ll~knr~lq~e~a~Lr~~n~~~~~~~~ 407 (629)
T KOG0963|consen 340 LNSR-SDYEEIKKELSILKAIEFGDSEEAND-EDETAKTLESL----------LLEKNRKLQNENASLRVANSGLSGRIT 407 (629)
T ss_pred Hhhh-ccHHHHHHHHHHHHHhhcCCcccccc-cccccchHHHH----------HHHHHhhhhHHHHHHhccccccchhHH
Q ss_pred -------hhhhHHHHHHHHHHHHhhhhhH
Q 040943 396 -------ELERKDAALKELKMELEDYHSL 417 (950)
Q Consensus 396 -------~L~sKd~~i~eLq~ELe~c~s~ 417 (950)
.+..+++.++++...|+..|..
T Consensus 408 ~~~~~~~el~~~~~~~ke~i~klE~dl~~ 436 (629)
T KOG0963|consen 408 ELSKKGEELEAKATEQKELIAKLEQDLLK 436 (629)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhHhh
No 128
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.89 E-value=3.7e+02 Score=32.55 Aligned_cols=42 Identities=19% Similarity=0.476 Sum_probs=29.8
Q ss_pred HHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhh
Q 040943 369 SANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELED 413 (950)
Q Consensus 369 s~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~ 413 (950)
...|+.-..=|.-+++++.. .+.-++.+||.-|.+||..|-.
T Consensus 405 n~~l~knq~vw~~kl~~~~e---~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 405 NKKLIKNQDVWRGKLKELEE---REKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555678888877765 5566778888888888887753
No 129
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=46.68 E-value=7.5e+02 Score=31.76 Aligned_cols=163 Identities=21% Similarity=0.315 Sum_probs=86.9
Q ss_pred HhhhHHHHHHHHHHHHHhhhh---------------hhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhH
Q 040943 192 QFKHLEEAHEKLKDQFRTCKK---------------EWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHE 256 (950)
Q Consensus 192 qf~hLeeah~kl~~qfr~skk---------------EW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahE 256 (950)
.-.||..|++.|..|+|..+. ||++-|+.|=..|..+...|+.-+-=.--|-+-|..=...++-=
T Consensus 46 r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l 125 (769)
T PF05911_consen 46 RVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAEL 125 (769)
T ss_pred HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 457899999999998885543 78887777777666666655322221111111111111112222
Q ss_pred HHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhh---chhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHh
Q 040943 257 ESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQ---RDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMS 333 (950)
Q Consensus 257 Es~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~---rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~s 333 (950)
-..+-..|+++..+.++++.+--++-..|-.+--|+-. |..|-.--|.+--+=-.-+-|.=.+++|||-|=|-||..
T Consensus 126 ~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 126 SEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444556666666666666555544444433333211 112211122222111222336666889999999999985
Q ss_pred HHHHHHHHhhhcCccchHHHHHHHhHHH
Q 040943 334 LKELQEAQIQKAGSSSSLAKLRNKLRSV 361 (950)
Q Consensus 334 LKElQEaqI~~agas~sl~kLr~Klr~L 361 (950)
.. -.. .++..++++|+-.-.|
T Consensus 206 ~r----k~l---pgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 206 VR----KKL---PGPAALAQMKNEVESL 226 (769)
T ss_pred Hh----ccC---CChHHHHHhHHHHHHh
Confidence 43 222 3355678888876666
No 130
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.16 E-value=1.2e+02 Score=31.58 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=45.2
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHH
Q 040943 784 EEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLED 863 (950)
Q Consensus 784 eeK~mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~ 863 (950)
..+.-.|..|+.++..++.++...+..+......-..+..|+.+-+.+. -..+.-+..|+.+|+.|++-
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~-----------~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL-----------NMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666655555555555555566666555544 23444555667799999998
Q ss_pred HHHhhH
Q 040943 864 VLKLSS 869 (950)
Q Consensus 864 ~~~lss 869 (950)
.|....
T Consensus 181 wm~~k~ 186 (194)
T PF08614_consen 181 WMQRKA 186 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
No 131
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.57 E-value=2.3e+02 Score=26.78 Aligned_cols=102 Identities=21% Similarity=0.311 Sum_probs=55.3
Q ss_pred hhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHH
Q 040943 274 YDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAK 353 (950)
Q Consensus 274 ~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~k 353 (950)
|.+++..|+..+.++..|+++| ..|+..-.|....++|+.-.. .|+.+ ...
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~-------------------------~~l~~~~~E~~~v~~EL~~l~---~d~~v-y~~ 51 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQR-------------------------QKVEAQLNENKKALEELEKLA---DDAEV-YKL 51 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHcCC---CcchH-HHH
Confidence 4578889999999988888873 445555555555566655321 11111 000
Q ss_pred HHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhh
Q 040943 354 LRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELED 413 (950)
Q Consensus 354 Lr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~ 413 (950)
.=.= -++..+..+.++|.. .++.+...+..+-.++......+.+++.+|..
T Consensus 52 VG~v--fv~~~~~ea~~~Le~-------~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 52 VGNV--LVKQEKEEARTELKE-------RLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred hhhH--HhhccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 123344445555544 34555566666666666666666666665543
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.40 E-value=5.4e+02 Score=29.75 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=83.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHH
Q 040943 53 QARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVN 132 (950)
Q Consensus 53 ~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~ 132 (950)
+.+++..--.|-..+|.|.+.|+.+. +.+++=+.+.+---+.+++.--....++..|...|-++.++|..+..-+-
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~----q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~ 89 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERY----QALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVE 89 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44777777788888999988887442 22222111111111111111112222667777777777777776666666
Q ss_pred hHHHHHhhhhhhhhhhhhHhhhh---hhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHh
Q 040943 133 VFKAEIEGLKGLLSASQKKCVKA---ESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRT 209 (950)
Q Consensus 133 ~~~~ei~~lk~~ls~~ekkc~ea---ek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~ 209 (950)
.+++.+.-+.|=...-..+-... .....+.-....|.+.+.+|| .+..+.
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLE---------------------k~~~q~------ 142 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLE---------------------KLREQI------ 142 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH---------------------HHHHHH------
Confidence 66666655554322211111100 001111111234444444432 222222
Q ss_pred hhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhh
Q 040943 210 CKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSH 255 (950)
Q Consensus 210 skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLah 255 (950)
..|+.+-.+++|+..-+.+.-|.-. ...+-+|+.|.|
T Consensus 143 --~qLe~d~qs~lDEkeEl~~ERD~yk-------~K~~RLN~ELn~ 179 (319)
T PF09789_consen 143 --EQLERDLQSLLDEKEELVTERDAYK-------CKAHRLNHELNY 179 (319)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 2788888999999988888776644 444444555544
No 133
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.11 E-value=5.4e+02 Score=29.71 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=71.4
Q ss_pred HhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhh----h-cchhhhhhhHHHHhhHHhhHHH
Q 040943 108 EQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEA----K-APKKLRERDDMLLKLEDENSKF 182 (950)
Q Consensus 108 ~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a----~-a~ke~~~rddm~~klEeE~~~~ 182 (950)
.+...||.-|+.++.++..++.-+.++-.|.+-+..=+.+-..||--+=... . +...+.-.|.++ -||+-+
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi----~ENRyL 201 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALI----MENRYL 201 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHH----HHHHHH
Confidence 7888999999999999999999999999999888888888888886651111 0 011222344444 355544
Q ss_pred HHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhh
Q 040943 183 ENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQ 235 (950)
Q Consensus 183 e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSq 235 (950)
..+|+ .|..|++.+.-.|..|.+.||..
T Consensus 202 ~erl~-------------------------q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 202 KERLK-------------------------QLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44332 56778888889999999999963
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.96 E-value=2.1e+02 Score=35.52 Aligned_cols=94 Identities=28% Similarity=0.420 Sum_probs=67.1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHH-HHhhhhhHHHH
Q 040943 301 ALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDC-SANLRAKEAEW 379 (950)
Q Consensus 301 ~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~C-s~~LraKEaEW 379 (950)
..|--.....+-++..+-...+|+.+|.+|..-+.+++-- +.+|++++..+ -++- .+..+.+|
T Consensus 412 ~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e----------ie~L~~~l~~~---~r~~~~~~~~~re--- 475 (652)
T COG2433 412 EERREITVYEKRIKKLEETVERLEEENSELKRELEELKRE----------IEKLESELERF---RREVRDKVRKDRE--- 475 (652)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH---HHHHHHHHhhhHH---
Confidence 3444445555666777888899999999999999999942 67888888776 2221 33333333
Q ss_pred hHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhh
Q 040943 380 SSQMQQMDAEMNGYRSELERKDAALKELKMELED 413 (950)
Q Consensus 380 ~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~ 413 (950)
+..+...|+.+...|..|...|.+|...|..
T Consensus 476 ---i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 476 ---IRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888888887763
No 135
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.69 E-value=2.1e+02 Score=26.05 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH---HHHhhhhhhhhhHHHHhHHHHHHHHH
Q 040943 719 LIQLLEEKNQKIDDLLQLVRSL---EERFNSSLNSFSSQLAGKQAEISLAI 766 (950)
Q Consensus 719 liqiv~EKD~~IddLq~~V~sl---Eq~f~~sl~sfs~~laEkq~Ei~~~~ 766 (950)
+...+++||..|..|+..-+.| +....+.+..+-.++.+....|..+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999766655 33444444455555555554444444
No 136
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.05 E-value=2.8e+02 Score=27.31 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=77.8
Q ss_pred HhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHH
Q 040943 103 CRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKF 182 (950)
Q Consensus 103 ~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~ 182 (950)
+..+....-.+..+.....+.|..++-.+...+.+|...-.-+...+..|.+..++....-.----+-.+..|.......
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~ 108 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEA 108 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 44566666677777777778899999999999999998888888888888888887777755555566667777777777
Q ss_pred HHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 040943 183 ENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWE 215 (950)
Q Consensus 183 e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~ 215 (950)
+..=.+.-++|-.=+--...-.++|+..++.+-
T Consensus 109 eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~yH 141 (150)
T PF07200_consen 109 EEESEELAEEFLDGEIDVDDFLKQFKEKRKLYH 141 (150)
T ss_dssp HHHHHHHC-S-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 776666666665444445566778887777663
No 137
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=43.94 E-value=4.6e+02 Score=29.38 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=71.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhch--HHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHH
Q 040943 60 KTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDF--NEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAE 137 (950)
Q Consensus 60 k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~--~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~e 137 (950)
-..++..+.+....|...+..-+.++..|-.+|+++...- .......+.-.-.|..|.+.-.+-..++++-..+|..-
T Consensus 245 f~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r~~~l~~L~~ay~~y~el~~~l~eG~~FY~dL 324 (342)
T cd08915 245 FEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNSNDSLDPREEALQDLEASYKKYLELKENLNEGSKFYNDL 324 (342)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3457788999999999999999999999999999985332 45566666667777777777778888888888888888
Q ss_pred Hhhhhhhhhhhhh
Q 040943 138 IEGLKGLLSASQK 150 (950)
Q Consensus 138 i~~lk~~ls~~ek 150 (950)
...+..+......
T Consensus 325 ~~~~~~l~~~~~~ 337 (342)
T cd08915 325 IEKVNRLLEECED 337 (342)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777665443
No 138
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=43.39 E-value=4.7e+02 Score=32.56 Aligned_cols=141 Identities=12% Similarity=0.238 Sum_probs=80.5
Q ss_pred HhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhh-----hHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHH
Q 040943 173 LKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEW-----EHERSTLLDAISSLQTSLDSQTRISGDLQNRLQ 247 (950)
Q Consensus 173 ~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW-----~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~ 247 (950)
..++.-+.....-+.|..+|..-+..-+.....++..-+..= ..+-..++++|..|++ |+
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~--------------ql- 320 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDN--------------QL- 320 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH--------------HH-
Confidence 457888888888999999998888777777665544443321 1122333444333322 21
Q ss_pred HhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhh---hhhhhHHHHHHHHHHHHhH
Q 040943 248 LCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHS---LGTKETFYKEMEYQATKLE 324 (950)
Q Consensus 248 mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~s---L~~Ket~~kE~ey~~~kLE 324 (950)
.-+..+..++...|+.=.-.++..+.++..|..+ ++.++.. +..++.-|.++++...-
T Consensus 321 -------------~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~----~~~l~~~~~~~p~~e~~~~~L~R~~~~-- 381 (726)
T PRK09841 321 -------------NELTFREAEISQLYKKDHPTYRALLEKRQTLEQE----RKRLNKRVSAMPSTQQEVLRLSRDVEA-- 381 (726)
T ss_pred -------------HHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHH----HHHHHHHHHhccHHHHHHHHHHHHHHH--
Confidence 1122233444556777777777777777777544 5555443 34444444444444432
Q ss_pred HhhHHHH-HhHHHHHHHHhhhcCccc
Q 040943 325 RENQELL-MSLKELQEAQIQKAGSSS 349 (950)
Q Consensus 325 qEN~el~-~sLKElQEaqI~~agas~ 349 (950)
++++- ..|.-++|++|+.+.+.+
T Consensus 382 --~~~lY~~lL~r~~e~~i~~a~~~~ 405 (726)
T PRK09841 382 --GRAVYLQLLNRQQELSISKSSAIG 405 (726)
T ss_pred --HHHHHHHHHHHHHHHHHHhccCCC
Confidence 23333 447778888888886543
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.27 E-value=7.4e+02 Score=31.38 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=26.2
Q ss_pred chHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHH
Q 040943 98 DFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVN 132 (950)
Q Consensus 98 ~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~ 132 (950)
++.+.++.+.+.-++|...++.++.+..-|+.++.
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455777778888888888888888777776655
No 140
>PF14772 NYD-SP28: Sperm tail
Probab=40.12 E-value=1.2e+02 Score=28.50 Aligned_cols=58 Identities=28% Similarity=0.530 Sum_probs=43.5
Q ss_pred HHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHH-----hhHHhhhh----hhhhhhhHHHHHHHHHHHHhh
Q 040943 353 KLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQ-----QMDAEMNG----YRSELERKDAALKELKMELED 413 (950)
Q Consensus 353 kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~e-----KL~~el~~----~~s~L~sKd~~i~eLq~ELe~ 413 (950)
.+++||.. -...|..++-.-.+.|..=+. -|.++|.. |-..++.||..|..|+.+|..
T Consensus 21 ~~~~kl~~---E~~~s~~~~~~I~~~W~~i~~~~~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~ 87 (104)
T PF14772_consen 21 ERREKLEE---EEKESRANFEKINERWREILRKKKPQELRKEIEEQKQACERIIDRKDALIKELQQELKE 87 (104)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444 477799999999999987654 35666654 555699999999999999984
No 141
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=39.48 E-value=1.1e+03 Score=31.51 Aligned_cols=161 Identities=26% Similarity=0.308 Sum_probs=95.7
Q ss_pred HHhHHHHHhhhhhhhhhhhhHhhhh--hhhh-hcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHH
Q 040943 131 VNVFKAEIEGLKGLLSASQKKCVKA--ESEA-KAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQF 207 (950)
Q Consensus 131 ~~~~~~ei~~lk~~ls~~ekkc~ea--ek~a-~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qf 207 (950)
+--+-.||++||.=|.++..|=.=. +.+. ...++......-+.+|+++...++.+|+-..|.|-|..+....|+...
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3467899999999998887765432 3333 333445556666777777777777777777777766666555555442
Q ss_pred HhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHH
Q 040943 208 RTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQ 287 (950)
Q Consensus 208 r~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ 287 (950)
.. ++..|+....-..+++
T Consensus 486 ~~------------------~k~~L~~~~~el~~~~-------------------------------------------- 503 (1041)
T KOG0243|consen 486 EK------------------LKSKLQNKNKELESLK-------------------------------------------- 503 (1041)
T ss_pred HH------------------HHHHHHHHHHHHHHHH--------------------------------------------
Confidence 22 2222222222222222
Q ss_pred HHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHH
Q 040943 288 LECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRD 367 (950)
Q Consensus 288 ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~ 367 (950)
.++..+++.|..++-.+..++.--.++..-+..|+.++.+-|.. ++.|+.|+..+...-..
T Consensus 504 ---------ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d----------~s~l~~kld~~~~~~d~ 564 (1041)
T KOG0243|consen 504 ---------EELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDD----------LSSLFEKLDRKDRLDDD 564 (1041)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhccccc
Confidence 22444455556666666666666666666677777777776654 66666676666655555
Q ss_pred HHHhh
Q 040943 368 CSANL 372 (950)
Q Consensus 368 Cs~~L 372 (950)
|...+
T Consensus 565 n~~~~ 569 (1041)
T KOG0243|consen 565 NQEVI 569 (1041)
T ss_pred cHHHH
Confidence 54443
No 142
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.44 E-value=1.5e+02 Score=29.90 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=51.3
Q ss_pred HhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhh---hhhHHHHhhHHhhHHHHHHhhhhHHHhhhH-HHHHHHHHHHH
Q 040943 132 NVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLR---ERDDMLLKLEDENSKFENQLKWKKEQFKHL-EEAHEKLKDQF 207 (950)
Q Consensus 132 ~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~---~rddm~~klEeE~~~~e~qLkwk~Eqf~hL-eeah~kl~~qf 207 (950)
..+..+|..|+.-+......|..++.......... ...+.+..|+.++..++.+|.=....+.+. .+-..++.+.|
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~ 154 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEY 154 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 33344444444444444455555544444444433 345566889999999999998766655553 23455666677
Q ss_pred HhhhhhhhHh
Q 040943 208 RTCKKEWEHE 217 (950)
Q Consensus 208 r~skkEW~~e 217 (950)
....++|..=
T Consensus 155 ~~~~k~w~kR 164 (169)
T PF07106_consen 155 KKWRKEWKKR 164 (169)
T ss_pred HHHHHHHHHH
Confidence 7777777543
No 143
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=39.42 E-value=5.4e+02 Score=28.05 Aligned_cols=151 Identities=23% Similarity=0.349 Sum_probs=76.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhh--------------c
Q 040943 59 EKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEK--------------N 124 (950)
Q Consensus 59 ~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~--------------~ 124 (950)
+|+-|||-+|.=..+.+.-++-|.+-|..|.+....+++. .+.-+....++-.++..-+.. .
T Consensus 7 qk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~----l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAE----LRNKESQIQELQDSLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence 4566666666666666666666666666555544433322 222233333333333221111 1
Q ss_pred hhHHHHHHhHHHHHhhhhhhhhhh---hhHhhhhhhhhhcchhhhhhhHHHHhh---HHhhHHHHHHhhhhHHHhhhHHH
Q 040943 125 IDQEQKVNVFKAEIEGLKGLLSAS---QKKCVKAESEAKAPKKLRERDDMLLKL---EDENSKFENQLKWKKEQFKHLEE 198 (950)
Q Consensus 125 ~dqe~~~~~~~~ei~~lk~~ls~~---ekkc~eaek~a~a~ke~~~rddm~~kl---EeE~~~~e~qLkwk~Eqf~hLee 198 (950)
.-+-.++.....||.+|+..++.. ...|.- +...||.-..- ......+..++-+......-+-.
T Consensus 83 ~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~----------l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREELACAGRLKRQCQL----------LSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccchhhhcc----------ccccchhHHhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 112234445555666666655554 111111 11222221111 12344455666666667776777
Q ss_pred HHHHHHHHHHhhhhhhhHhHhHHhh
Q 040943 199 AHEKLKDQFRTCKKEWEHERSTLLD 223 (950)
Q Consensus 199 ah~kl~~qfr~skkEW~~ers~LlD 223 (950)
.++....-|-.-+.=|..|+.+.|-
T Consensus 153 ~~e~q~~~Fe~ER~~W~eEKekVi~ 177 (202)
T PF06818_consen 153 RREEQRSSFEQERRTWQEEKEKVIR 177 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888877765
No 144
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.30 E-value=1.2e+03 Score=32.11 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=55.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh---hhhhhHHHHhHHHHHHHHHHHHHHh
Q 040943 705 QICAERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSS---LNSFSSQLAGKQAEISLAIEAWEKI 772 (950)
Q Consensus 705 k~eaErs~e~EKe~liqiv~EKD~~IddLq~~V~slEq~f~~s---l~sfs~~laEkq~Ei~~~~~a~eki 772 (950)
-.++|.....-++.+-+-+..=..+.+.|.+..++.+.++.+. |......+.....+|..+++-|.-.
T Consensus 1051 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v 1121 (1486)
T PRK04863 1051 DSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAV 1121 (1486)
T ss_pred CccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555567788888888889999999999999998887 4577788899999999999999764
No 145
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=39.17 E-value=74 Score=28.47 Aligned_cols=44 Identities=30% Similarity=0.439 Sum_probs=35.2
Q ss_pred HHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhh
Q 040943 100 NEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKG 143 (950)
Q Consensus 100 ~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~ 143 (950)
.+.+.+....+-.+-.-|.++..+|.++++.|...+.+++.++.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566667777788999999999999999999999988764
No 146
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.46 E-value=1.1e+03 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHh
Q 040943 376 EAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELE 412 (950)
Q Consensus 376 EaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe 412 (950)
-+|-+++...+..++..|.-+.+.+-+-|...-..++
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le 837 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLE 837 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4566677777777777777777666666655555444
No 147
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=36.15 E-value=6.9e+02 Score=28.36 Aligned_cols=89 Identities=20% Similarity=0.148 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhc---------hHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHH
Q 040943 61 TEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFD---------FNEKCRKLEEQNRVLVLALDEANEKNIDQEQKV 131 (950)
Q Consensus 61 ~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~---------~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~ 131 (950)
.+|+..+.+....|...+..-++++..|-.+|+++..+ .....+..+.-...|..|.+.-.+-...+++-.
T Consensus 253 ~~eL~kf~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~ 332 (356)
T cd09237 253 PEELEKFKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAGLPKGL 332 (356)
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 35788899999999999999999999999999998533 234445555555666777777777777788888
Q ss_pred HhHHHHHhhhhhhhhhhh
Q 040943 132 NVFKAEIEGLKGLLSASQ 149 (950)
Q Consensus 132 ~~~~~ei~~lk~~ls~~e 149 (950)
.+|..-...+.++.....
T Consensus 333 ~FY~dL~~~~~~l~~~~~ 350 (356)
T cd09237 333 EFYDDLLKMAKDLAKNVQ 350 (356)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877777766655443
No 148
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.11 E-value=1.3e+02 Score=27.54 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=29.5
Q ss_pred chHHHHHHHHhhhHhHHHHHHHhhHHhhhHHhhhhcccccccc
Q 040943 845 TSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSK 887 (950)
Q Consensus 845 ~se~~v~eLk~en~~l~~~~~~lssEr~~Ll~~~~gl~d~i~~ 887 (950)
.+..-...|+.+|..|-....+|..||...-+.|.||-++|..
T Consensus 29 eLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 29 ELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333444455667777777788888888888888888777653
No 149
>PRK11519 tyrosine kinase; Provisional
Probab=35.98 E-value=9.2e+02 Score=30.09 Aligned_cols=139 Identities=14% Similarity=0.276 Sum_probs=72.7
Q ss_pred HhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhh-----hHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHH
Q 040943 173 LKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEW-----EHERSTLLDAISSLQTSLDSQTRISGDLQNRLQ 247 (950)
Q Consensus 173 ~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW-----~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~ 247 (950)
.-++.-+......+.|..+|+.-+...+......+..-+..= ..+-..+++.+..+++.+-.
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~------------- 322 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE------------- 322 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH-------------
Confidence 345555666788999999999888777777666544433321 22333444444333322211
Q ss_pred HhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhh---hhhhhHHHHHHHHHHHHhH
Q 040943 248 LCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHS---LGTKETFYKEMEYQATKLE 324 (950)
Q Consensus 248 mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~s---L~~Ket~~kE~ey~~~kLE 324 (950)
++.+.+++...|+.=.-.+..++.++..|..+ ++.++.. +...+.=|.+++....-
T Consensus 323 ---------------l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~----~~~l~~~~~~lp~~e~~~~~L~Re~~~-- 381 (719)
T PRK11519 323 ---------------LTFKEAEISKLYTKEHPAYRTLLEKRKALEDE----KAKLNGRVTAMPKTQQEIVRLTRDVES-- 381 (719)
T ss_pred ---------------HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH----HHHHHHHHHhccHHHHHHHHHHHHHHH--
Confidence 23333445556776666677777666666543 4444332 22233333333332222
Q ss_pred HhhHHH-HHhHHHHHHHHhhhcCc
Q 040943 325 RENQEL-LMSLKELQEAQIQKAGS 347 (950)
Q Consensus 325 qEN~el-~~sLKElQEaqI~~aga 347 (950)
|+.+ ...|.-++|+.|..+.+
T Consensus 382 --~~~lY~~lL~r~~e~~i~~a~~ 403 (719)
T PRK11519 382 --GQQVYMQLLNKQQELKITEAST 403 (719)
T ss_pred --HHHHHHHHHHHHHHHhHHhcCC
Confidence 2222 34556677777776643
No 150
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.89 E-value=4.9e+02 Score=26.55 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=86.4
Q ss_pred hchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhh
Q 040943 294 QRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLR 373 (950)
Q Consensus 294 ~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~Lr 373 (950)
.|+.|+-.||...+.-.-.+.-..-+..-+..++..+...|...++. +.++|..+..+..-|..--....
T Consensus 60 ERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~----------~~~~r~~l~~~k~~r~k~~~~~~ 129 (177)
T PF13870_consen 60 ERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE----------LAKLREELYRVKKERDKLRKQNK 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999888888888888888999999999999988875 77888888887777665544444
Q ss_pred hhHHHHhH-hHHhhHHhhhhhhhhhhhHHHHHHHHHHHHh
Q 040943 374 AKEAEWSS-QMQQMDAEMNGYRSELERKDAALKELKMELE 412 (950)
Q Consensus 374 aKEaEW~~-Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe 412 (950)
..-.+|.. .+|.+..|.+.+...++.+...|..+.-..+
T Consensus 130 ~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~ 169 (177)
T PF13870_consen 130 KLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVE 169 (177)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 7888988999999888888888888776544
No 151
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.72 E-value=9e+02 Score=29.55 Aligned_cols=274 Identities=21% Similarity=0.240 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHhhhhhhHHHHHH
Q 040943 9 DEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEK-TEEISEVKQLFEGLKRSLTEKESIIKC 87 (950)
Q Consensus 9 deakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k-~eEi~~~k~~~e~L~~~L~eKEs~i~h 87 (950)
-+---+++.+-|++.++.-.+..|+.-. .++.+-.++.|.+ .-++.. .+-+.--......|...|.++-+-+-|
T Consensus 237 ~eq~eeneel~ae~kqh~v~~~ales~~----sq~~e~~selE~l-lklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ 311 (521)
T KOG1937|consen 237 TEQNEENEELQAEYKQHLVEYKALESKR----SQFEEQNSELEKL-LKLKERLIEALDDGEAYLAKLMGKLAELNKQMEE 311 (521)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHH-HHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHH
Confidence 3333455667777777666665554221 1122222333311 111110 111111233567788888888888888
Q ss_pred hhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhh-hhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhh---hhhcch
Q 040943 88 LGAANDKLRFDFNEKCRKLEEQNRVLVLALDEA-NEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAES---EAKAPK 163 (950)
Q Consensus 88 L~aandkL~~~~~ek~~k~e~e~r~lvlaLde~-~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek---~a~a~k 163 (950)
|-.-=+.-|.-...++..+.++.-.+- ++.. ..+.+.+|+-+....++|.+=..+-.--.++..-.-+ |-.--.
T Consensus 312 ltqqwed~R~pll~kkl~Lr~~l~~~e--~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytq 389 (521)
T KOG1937|consen 312 LTQQWEDTRQPLLQKKLQLREELKNLE--TEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQ 389 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 888888888888888888777655432 2333 3677888888888888888433332221111111111 111122
Q ss_pred hhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhH
Q 040943 164 KLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQ 243 (950)
Q Consensus 164 e~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq 243 (950)
-....+-++-|.++.+.++-+--+-.+-|-.-+.+++.. .| ..+|+.-+--..=|-..|-+=.+=
T Consensus 390 rikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R---sf------------avtdellf~sakhddhvR~aykll 454 (521)
T KOG1937|consen 390 RIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR---SF------------AVTDELLFMSAKHDDHVRLAYKLL 454 (521)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hH------------HHHHHHHHHHhccCHHHHHHHHHH
Confidence 345567778888888877766555444444444333221 21 344555555555566666565666
Q ss_pred HHHH-HhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHH-hhhhchhHHHHHHhhhhhhhHHHHHHHHHHH
Q 040943 244 NRLQ-LCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLEC-LTNQRDKEIAALRHSLGTKETFYKEMEYQAT 321 (950)
Q Consensus 244 ~rl~-mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~-Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~ 321 (950)
-++| -|+|-+.. -..-|++--+.-|.-++|.. +-.++++-+.-|+. -..
T Consensus 455 t~iH~nc~ei~E~---------------i~~tg~~~revrdlE~qI~~E~~k~~l~slEkl~~--------------Dyq 505 (521)
T KOG1937|consen 455 TRIHLNCMEILEM---------------IRETGALKREVRDLESQIYVEEQKQYLKSLEKLHQ--------------DYQ 505 (521)
T ss_pred HHHHHHHHHHHHH---------------HHHcchHHHHHHHHHHHHhHHHHHHHHhhHHHHHH--------------HHH
Confidence 6666 67765433 34457777777777777775 33444444444432 235
Q ss_pred HhHHhhHHHHHh
Q 040943 322 KLERENQELLMS 333 (950)
Q Consensus 322 kLEqEN~el~~s 333 (950)
.+.|+|+.|...
T Consensus 506 airqen~~L~~~ 517 (521)
T KOG1937|consen 506 AIRQENDQLFSE 517 (521)
T ss_pred HHHHHHHHHHHH
Confidence 677778777653
No 152
>PF14992 TMCO5: TMCO5 family
Probab=35.71 E-value=7.2e+02 Score=28.39 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhhhhhhHHHHHHHHhhhhhhhhHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhhhH----HHHHH
Q 040943 660 SFEIEKQRFSQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEHEKESLIQLLEEKNQKI----DDLLQ 735 (950)
Q Consensus 660 s~~~Ek~~L~qi~~EKd~~IddLQk~I~~LEqEsl~rELe~A~lak~eaErs~e~EKe~liqiv~EKD~~I----ddLq~ 735 (950)
+....+..|++=|+++..-|-.|.++|....+=.=+.+=+..++ .+-+..| ++=+--.--++.++... .|||.
T Consensus 15 ~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~--~~~e~~l-~~le~e~~~LE~~ne~l~~~~~elq~ 91 (280)
T PF14992_consen 15 RLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS--EERETDL-QELELETAKLEKENEHLSKSVQELQR 91 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh--hchHHHH-HHHHhhhHHHhhhhHhhhhhhhhhhh
Q ss_pred HHHHHHHHhhhhhhhhhHHHHhHHHHHHHHHHHHHHhhHHHHhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHhhhchhH
Q 040943 736 LVRSLEERFNSSLNSFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEKKLMIVELEDEISNVQQKLELQEKSLSHSK 815 (950)
Q Consensus 736 ~V~slEq~f~~sl~sfs~~laEkq~Ei~~~~~a~eki~~ae~La~leieeK~mmI~ElE~ei~~~q~kL~~~ee~~s~~k 815 (950)
.+..-+.++.+-=.+.|..+++-++.+.++..- ......-|.++++|...+.+-.+-+=.-.-.++
T Consensus 92 k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~--------------~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klk 157 (280)
T PF14992_consen 92 KQDEQETNVQCEDPQLSQSLQFSKNKLQQLLES--------------CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLK 157 (280)
T ss_pred hhccccCCCCCCccchhcccHHhhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhhHHHHHHHHHHHHH
Q 040943 816 HQAQKIEAELALKQREMK 833 (950)
Q Consensus 816 ~~a~~~eaEm~akq~e~~ 833 (950)
..-.+++.+++.-.++.+
T Consensus 158 E~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 158 EKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHH
No 153
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.66 E-value=1.6e+02 Score=26.73 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=37.0
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhh
Q 040943 221 LLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQ 294 (950)
Q Consensus 221 LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~ 294 (950)
|=.+|.+|++.||+-+|-..-.+.- | |.|=.|=+.+-++.+..+.++.+.++.++.|...
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~----~----------k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIE----N----------KRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888866554422 1 2222244556666677777777777776666433
No 154
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.89 E-value=1.6e+02 Score=29.49 Aligned_cols=50 Identities=26% Similarity=0.490 Sum_probs=45.3
Q ss_pred hhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHh
Q 040943 211 KKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRR 260 (950)
Q Consensus 211 kkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~r 260 (950)
+-.|+-||+-|--.|..|+-..-++-++-.||-.|..|=-.||-.|-++-
T Consensus 20 R~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 20 RNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44899999999999999999999999999999999999999998865553
No 155
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.63 E-value=8.6e+02 Score=30.12 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHH-hhhhhHh--hhHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHH
Q 040943 8 LDEIKAENEKLRADC-KSKSELC--GNLKKA-HNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKES 83 (950)
Q Consensus 8 ldeakaeiEkL~ae~-r~K~~~~--d~Lkk~-~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs 83 (950)
|-..+.|+..|+.+| .-|++.+ .-.+.. ++.=+-+++.++.++-+...++.+|.++++..-.=+--|-+-|..+..
T Consensus 168 Lk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qk 247 (596)
T KOG4360|consen 168 LKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQK 247 (596)
T ss_pred cCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334456666665553 2233333 333332 335667888888888888888888888887655544444444433333
Q ss_pred HHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhh
Q 040943 84 IIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGL 144 (950)
Q Consensus 84 ~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ 144 (950)
=|+-+.-.+..+.. -+-..-+--|.+-.-+.|-..++-...+..|....||--|+.+
T Consensus 248 k~k~~~~Ekeel~~----~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 248 KIKYLRHEKEELDE----HLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33333223332221 1222334445555556666777777788888877777777654
No 156
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=34.16 E-value=3.9e+02 Score=28.14 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=45.8
Q ss_pred HHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHH---HhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHH
Q 040943 128 EQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDML---LKLEDENSKFENQLKWKKEQFKHLEEAHEKLK 204 (950)
Q Consensus 128 e~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~---~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~ 204 (950)
+..+..+.++|+.++.-+...+.++..+...-..+ -.|..++ ..|..++..+..+|. .+...=-...
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~---~eR~~~l~~l~~l~~~~~~l~~el~-------~~~~~Dp~~i 137 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES---EEREELLEELEELKKELKELKKELE-------KYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCHHHH
Confidence 34444444444444444444444444442222222 3344444 344455555555544 2211111122
Q ss_pred HHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhh
Q 040943 205 DQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRIS 239 (950)
Q Consensus 205 ~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~ 239 (950)
++.+.....|-..=-.+-|.|++|+.=+..+.-+.
T Consensus 138 ~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~ 172 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMD 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCC
Confidence 22222222333334567788988888776665443
No 157
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.34 E-value=1.1e+02 Score=34.47 Aligned_cols=110 Identities=21% Similarity=0.348 Sum_probs=72.6
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHH---HhhhcchHHHHHHHHhhhHh
Q 040943 783 IEEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQL---EENLTTSDALVIELRSENRK 859 (950)
Q Consensus 783 ieeK~mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~m---e~k~r~se~~v~eLk~en~~ 859 (950)
|.-+.--+.+.+..+...+..|...+..+..+...-..++.+.+....+...+...+ +.++.....++.-|..++.-
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R 295 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKER 295 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
Confidence 344555666666777777777776666666666666666677766666666666555 46677777788888878777
Q ss_pred HHHHHHHhhHHhhhHHhhh---hcccccccccchhh
Q 040943 860 LLEDVLKLSSERENLLGFL---GGLGDRVSKFSDED 892 (950)
Q Consensus 860 l~~~~~~lssEr~~Ll~~~---~gl~d~i~~~s~~D 892 (950)
--+.+..|.....+|+|-. .++.--.|-|+...
T Consensus 296 W~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~ 331 (344)
T PF12777_consen 296 WSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEY 331 (344)
T ss_dssp CHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHH
Confidence 7777777877777777643 23334445555544
No 158
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.19 E-value=7.4e+02 Score=27.83 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=83.5
Q ss_pred HHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhh
Q 040943 182 FENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRK 261 (950)
Q Consensus 182 ~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK 261 (950)
..+.+.|-.+|+.-++..+......+..-+... .++| ++.+.... .+.++.=+++.-
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~-----~~~d--------~~~~~~~~----------~~~i~~L~~~l~ 224 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKN-----KVFD--------PKAQSSAQ----------LSLISTLEGELI 224 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcC--------hHHHHHHH----------HHHHHHHHHHHH
Confidence 567778888888777777776666555444332 1221 11111110 011222234455
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhh----hhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHH
Q 040943 262 YLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHS----LGTKETFYKEMEYQATKLERENQELLMSLKEL 337 (950)
Q Consensus 262 ~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~s----L~~Ket~~kE~ey~~~kLEqEN~el~~sLKEl 337 (950)
-+++++.+++..|++-.-.+..++.++..|..+-+.+++.+-.+ +..+..=|.++++...--+ .-+...|.-+
T Consensus 225 ~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~---~~y~~~l~r~ 301 (362)
T TIGR01010 225 RVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQ---QQLKAALTSL 301 (362)
T ss_pred HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 66788888888999989999999999999999988877766553 4444443333333333222 2244566677
Q ss_pred HHHHhhhcCcc
Q 040943 338 QEAQIQKAGSS 348 (950)
Q Consensus 338 QEaqI~~agas 348 (950)
+++.+..+...
T Consensus 302 ~~a~~~~~~~~ 312 (362)
T TIGR01010 302 QQTRVEADRQQ 312 (362)
T ss_pred HHHHHHHHhhh
Confidence 77777766443
No 159
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=33.01 E-value=5.7e+02 Score=28.02 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=67.7
Q ss_pred chhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHH-----------HHHHHhHHHHH
Q 040943 295 RDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLA-----------KLRNKLRSVEQ 363 (950)
Q Consensus 295 rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~-----------kLr~Klr~LEq 363 (950)
....+..|+..|.+|+--+=-++-...|.||.+=+=-+ ++.+-+..|.+++-.- +--|.||..|.
T Consensus 55 ~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~----mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~ee 130 (205)
T PF12240_consen 55 PSNNASNLKELLREKEERILALEADMTKWEQKYLEESA----MRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEE 130 (205)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHH
Confidence 34789999999999999999999999999998833222 4445444443332110 00234566666
Q ss_pred hhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHh
Q 040943 364 MHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELE 412 (950)
Q Consensus 364 ~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe 412 (950)
+|.. + ....-|..=|-.+-.+|--||+.|+-||...-
T Consensus 131 l~~a---~---------~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~ 167 (205)
T PF12240_consen 131 LHMA---N---------RKCQEMENRIKALHAQIAEKDAMIKVLQQRSR 167 (205)
T ss_pred HHHh---h---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6642 2 22333555577777888899999999987654
No 160
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=31.72 E-value=6.9e+02 Score=28.34 Aligned_cols=133 Identities=21% Similarity=0.229 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHhhhhhh
Q 040943 3 RIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISE-VKQLFEGLKRSLTEK 81 (950)
Q Consensus 3 ~v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~-~k~~~e~L~~~L~eK 81 (950)
..+.+++..+++-..+-.+++.+++-+ ...-=..+.. .....+-.--..+|.. +.+....|...+..-
T Consensus 195 ~~l~~l~~lk~eR~~~~~~Lk~~~dDI---~~~ll~~~~~--------~~~~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q 263 (339)
T cd09235 195 QLMEQVETIKAEREVIESELKSATFDM---KSKFLSALAQ--------DGAINEEAISVEELDRVYGPLQKQVQESLSRQ 263 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHh--------cCCccHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776664322 1111100000 0000111113456654 899999999999999
Q ss_pred HHHHHHhhhhhhhhhh--chHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhh
Q 040943 82 ESIIKCLGAANDKLRF--DFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLS 146 (950)
Q Consensus 82 Es~i~hL~aandkL~~--~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls 146 (950)
++++..|..+|.++.. ..+.-..+++.--..|..|.+.-.+-...+++-..+|..-..-+..+..
T Consensus 264 ~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~ 330 (339)
T cd09235 264 ESLLANIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEILVKFQN 330 (339)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998832 2222344666666777777777777777777888888777666655544
No 161
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=30.97 E-value=4.9e+02 Score=27.12 Aligned_cols=88 Identities=24% Similarity=0.375 Sum_probs=52.6
Q ss_pred HhhhhhhhchhHHHHHHhHHHHHhhhhh-------hhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhh
Q 040943 116 ALDEANEKNIDQEQKVNVFKAEIEGLKG-------LLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKW 188 (950)
Q Consensus 116 aLde~~~~~~dqe~~~~~~~~ei~~lk~-------~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkw 188 (950)
.||..-.+|...+..+...+...++|.. +...++.++.++|-...+-+. .=...+..|+++|+.++.+++=
T Consensus 37 ~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k--~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 37 LLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERK--DLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 4566677777777777777777777665 444445555544433333222 2223467788888888877766
Q ss_pred hHHHhhhHHHHHHHHHH
Q 040943 189 KKEQFKHLEEAHEKLKD 205 (950)
Q Consensus 189 k~Eqf~hLeeah~kl~~ 205 (950)
..+|-..|++-...++.
T Consensus 115 ~~~q~~rlee~e~~l~~ 131 (158)
T PF09744_consen 115 LSDQSSRLEEREAELKK 131 (158)
T ss_pred hhhhccccchhHHHHHH
Confidence 66666666554444433
No 162
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.90 E-value=1.1e+03 Score=29.20 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=67.9
Q ss_pred hhHHHHHHhhhhhhhc--hhHHHHHHhHHHHHhhhhhhhhhhh-----------hHhhhh-----hhhhhcchhhhhhhH
Q 040943 109 QNRVLVLALDEANEKN--IDQEQKVNVFKAEIEGLKGLLSASQ-----------KKCVKA-----ESEAKAPKKLRERDD 170 (950)
Q Consensus 109 e~r~lvlaLde~~~~~--~dqe~~~~~~~~ei~~lk~~ls~~e-----------kkc~ea-----ek~a~a~ke~~~rdd 170 (950)
..-...-+|+.++.-. +....--..|-++|.||++++|..+ |..+-+ ++-+..-+-+..+||
T Consensus 216 ~~~s~~e~l~kl~~EqQlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~ 295 (613)
T KOG0992|consen 216 VEESRLESLGKLNSEQQLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDD 295 (613)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555541 1112223467889999999988665 444444 334455566788899
Q ss_pred HHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 040943 171 MLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWE 215 (950)
Q Consensus 171 m~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~ 215 (950)
.++..++-+..++ ++|----+=..-=+..+++++.+-.|+++|.
T Consensus 296 l~q~~~~~~~eL~-K~kde~~~n~~~~~lie~lq~el~~al~~c~ 339 (613)
T KOG0992|consen 296 LIQSRKQVSFELE-KAKDEIKQNDDKVKLIEELQDELSVALKECR 339 (613)
T ss_pred HHHHHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777 4443333444455677888898888888887
No 163
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=30.54 E-value=3.8e+02 Score=29.33 Aligned_cols=121 Identities=18% Similarity=0.178 Sum_probs=77.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHHHHHh
Q 040943 788 LMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKL 867 (950)
Q Consensus 788 mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~~~~l 867 (950)
-=|..|+.++..++.-..+.......+.+.+.-+...+...+......+..+........+...++-.+...+...|.++
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l 147 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKL 147 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888887666677777766777777676666666666666666666666667776777777777777777777
Q ss_pred hHHhhhHHhh---hhcc---cccccccchhhHHHHHHHHHHH-hhccc
Q 040943 868 SSERENLLGF---LGGL---GDRVSKFSDEDMQLMEMLGRLV-QSLDS 908 (950)
Q Consensus 868 ssEr~~Ll~~---~~gl---~d~i~~~s~~D~~Lm~~L~~~~-q~~d~ 908 (950)
+++=.+.... -.++ .--+..|...+.+-|..|+.-+ ..|..
T Consensus 148 ~~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF~~ 195 (256)
T PF14932_consen 148 ASELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQFFQ 195 (256)
T ss_pred HHHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7654332110 0000 0124556667788889999844 46775
No 164
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.97 E-value=1.4e+03 Score=29.97 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=73.5
Q ss_pred hhhhhhhhhhHHHHHHHHhhhhhhhhHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 040943 669 SQITKEKDEILEDLQRQIGWLEEESLRRELESSLLTQICAERSFEHEKESLIQLLEEKNQKIDDLLQLVRSLEERFNSSL 748 (950)
Q Consensus 669 ~qi~~EKd~~IddLQk~I~~LEqEsl~rELe~A~lak~eaErs~e~EKe~liqiv~EKD~~IddLq~~V~slEq~f~~sl 748 (950)
...|.++...|.++|.....|=+|. .+|..-+..+--+=.--..-+..|-...+.|+-.+..|-..+.-++....+.+
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ek--q~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~ 562 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEK--QELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKL 562 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777777666655542 34444443332211111111222333346777777777778888888888776
Q ss_pred h---hhhHHHHhHHHHHHHHHHHHHHhhHHHHhhhhhhhhh
Q 040943 749 N---SFSSQLAGKQAEISLAIEAWEKISAAETLAMLEIEEK 786 (950)
Q Consensus 749 ~---sfs~~laEkq~Ei~~~~~a~eki~~ae~La~leieeK 786 (950)
. +|.-|+.|...+++-..=+++++--++....-+++-|
T Consensus 563 ~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~ 603 (1118)
T KOG1029|consen 563 NEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETK 603 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 8999999999999988888888877777766666544
No 165
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.37 E-value=3.5e+02 Score=23.90 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=14.2
Q ss_pred hchhHHHHHHhhhhhhhHHHHHHHHHHH
Q 040943 294 QRDKEIAALRHSLGTKETFYKEMEYQAT 321 (950)
Q Consensus 294 ~rd~eIa~LR~sL~~Ket~~kE~ey~~~ 321 (950)
.|..-|..+-..|.+=+-+++.|++.+.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555444
No 166
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.37 E-value=9.7e+02 Score=27.97 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=64.0
Q ss_pred HHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhh----HhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhh-
Q 040943 180 SKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWE----HERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALS- 254 (950)
Q Consensus 180 ~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~----~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLa- 254 (950)
.....-..|-..|...++.........++.-+..=+ .....+...|..++..+..-..-..+.+.++..=...++
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556777777776666666666555444332211 122344555555555544333333333333332222111
Q ss_pred --------------hHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHH
Q 040943 255 --------------HEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEI 299 (950)
Q Consensus 255 --------------hEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eI 299 (950)
--.++-.=++.++.++...|+.=.....+++.+|+.|..+...++
T Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 237 EEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEG 295 (498)
T ss_pred CCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhc
Confidence 122344445667777777777777777777777777776654444
No 167
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.24 E-value=5.9e+02 Score=27.46 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=49.1
Q ss_pred HhhHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHHHHHhhHHhhhHHhhhhcccccccccchhhH
Q 040943 818 AQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKFSDEDM 893 (950)
Q Consensus 818 a~~~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~~~~lssEr~~Ll~~~~gl~d~i~~~s~~D~ 893 (950)
+..+.+++.....++..+.. ..+..+..|..+..+-.+|-..+-.+..-|..|..++..+.|++..|...|.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~----~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEV----YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444433333 5556666777777777777777777788888999999999999999888884
No 168
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.94 E-value=7.1e+02 Score=26.28 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=47.6
Q ss_pred hHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhh-hhhH-HHHHhhhhHHHHHHHHHHhh
Q 040943 380 SSQMQQMDAEMNGYRSELERKDAALKELKMELED-YHSL-TLQLKMQNEEISVMLLELEN 437 (950)
Q Consensus 380 ~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~-c~s~-~~Ql~~qNeE~s~mllvl~k 437 (950)
+..|-+|..-||..+.+...+++.|-.+..+|=+ |.-. |=|+++.=.|+-++|..+-.
T Consensus 32 R~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrd 91 (189)
T PF10211_consen 32 RQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVTIDCPERGLLLLRVRD 91 (189)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHH
Confidence 3457788888999999999999999888888877 7766 77999999999988776663
No 169
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.54 E-value=1.5e+03 Score=29.80 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 040943 592 LRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKFQQQILSLEQDLK 643 (950)
Q Consensus 592 lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~~i~~lq~qi~~lE~~lk 643 (950)
+.|+++..+=+==.-...+..+++.|...+.........+..|...+...++
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444333222356677888888888888877777778888888887766
No 170
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.46 E-value=7e+02 Score=28.68 Aligned_cols=107 Identities=24% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhH
Q 040943 172 LLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQ 251 (950)
Q Consensus 172 ~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnq 251 (950)
+..||..+.++..-=+=++=|.--||-|+.|=+..+-..| -+++.|+--.-+=..+.++|++.=+-|.|
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek-----------~e~s~LkREnq~l~e~c~~lek~rqKlsh 88 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEK-----------NEYSALKRENQSLMESCENLEKTRQKLSH 88 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----------hhhhhhhhhhhhHHHHHHHHHHHHHHhhH
Q ss_pred HhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHH
Q 040943 252 ALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLE 289 (950)
Q Consensus 252 aLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie 289 (950)
-|..-|+.-.+||.+++-.|...+..-.+.---|+.+|
T Consensus 89 dlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 89 DLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 171
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=28.29 E-value=8.1e+02 Score=26.75 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=29.7
Q ss_pred HHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhH
Q 040943 266 QVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLE 324 (950)
Q Consensus 266 e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLE 324 (950)
|||=+|..+-.+-++ -++|+.||-+||+.|..--+-+...+..+..|.
T Consensus 11 EIsLLKqQLke~q~E-----------~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~ 58 (202)
T PF06818_consen 11 EISLLKQQLKESQAE-----------VNQKDSEIVSLRAQLRELRAELRNKESQIQELQ 58 (202)
T ss_pred hHHHHHHHHHHHHHH-----------HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455566555444333 256788888888887766666666655555443
No 172
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.87 E-value=1.7e+03 Score=30.38 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=63.0
Q ss_pred hHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHH
Q 040943 126 DQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKD 205 (950)
Q Consensus 126 dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~ 205 (950)
+.+.....+.+.|+.++...+.-.. ++++.+..+...-+.++...++++.++..+++=+.++.+.++....
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~-----~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~---- 532 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQR-----EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND---- 532 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4455555566666666666555544 6667777777777888888888889998888888888776644433
Q ss_pred HHHhhhhhhhHhHhHHhhhhhhhhhhh
Q 040943 206 QFRTCKKEWEHERSTLLDAISSLQTSL 232 (950)
Q Consensus 206 qfr~skkEW~~ers~LlDeI~sLq~~L 232 (950)
..+.+...-.+.|.+|......+.+..
T Consensus 533 ~~~~~~~kv~~~rk~le~~~~d~~~e~ 559 (1317)
T KOG0612|consen 533 NAADSLEKVNSLRKQLEEAELDMRAES 559 (1317)
T ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhH
Confidence 333444444555666655444444433
No 173
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.05 E-value=3.5e+02 Score=33.77 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=50.3
Q ss_pred hhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhh-hHhHhHHhhhhhhhhhhhhhhhhhhhh
Q 040943 163 KKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEW-EHERSTLLDAISSLQTSLDSQTRISGD 241 (950)
Q Consensus 163 ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW-~~ers~LlDeI~sLq~~LdSqtr~~ed 241 (950)
+.++....++.+|++||+.+...+.-.+--.--|+.-+..++...+ .+.| ..|-..+-..|..|...|--+....+.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR--DKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999998888877666433333333333333322 2233 222344555677777777776666666
Q ss_pred hHHHHH
Q 040943 242 LQNRLQ 247 (950)
Q Consensus 242 lq~rl~ 247 (950)
|..+|.
T Consensus 500 L~~~l~ 505 (652)
T COG2433 500 LERKLA 505 (652)
T ss_pred HHHHHH
Confidence 666665
No 174
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.76 E-value=89 Score=28.38 Aligned_cols=50 Identities=24% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHhhhcchHHHHHHHHhhhHhHHHHHHHhhHHhhhHHhhhhcccccccc
Q 040943 838 QLEENLTTSDALVIELRSENRKLLEDVLKLSSERENLLGFLGGLGDRVSK 887 (950)
Q Consensus 838 ~me~k~r~se~~v~eLk~en~~l~~~~~~lssEr~~Ll~~~~gl~d~i~~ 887 (950)
.++.|+..+=.....|+.+|..|-..+..+.+||..|+.-..--..+|..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777788999999999999999999999988766554444443
No 175
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.58 E-value=1e+03 Score=27.27 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=65.2
Q ss_pred HHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHh----H-hHHhhhhhhhhhhhhhhhhhhhhhHHHHHH--
Q 040943 176 EDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHE----R-STLLDAISSLQTSLDSQTRISGDLQNRLQL-- 248 (950)
Q Consensus 176 EeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~e----r-s~LlDeI~sLq~~LdSqtr~~edlq~rl~m-- 248 (950)
+.-+.....-..|-.+|..-+..-.......+..-+.+.+-- . ......+..+...|-.-..-..+.+.++.-
T Consensus 163 ~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 242 (444)
T TIGR03017 163 ELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSS 242 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444555666788888887777777777766655555443210 0 000111111111111100001111111110
Q ss_pred ---------hhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhh
Q 040943 249 ---------CNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSL 306 (950)
Q Consensus 249 ---------CnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL 306 (950)
-+..+..--++-.-++.++.++...|+.-.-....++.+|+.|-.+-+.+|+.+..++
T Consensus 243 ~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~ 309 (444)
T TIGR03017 243 GKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSV 309 (444)
T ss_pred CcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233334444556666777777777777777777777777776666666655554
No 176
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.02 E-value=6.6e+02 Score=24.94 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=47.4
Q ss_pred HHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHH
Q 040943 112 VLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKE 191 (950)
Q Consensus 112 ~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~E 191 (950)
+|+..-+.....+.++...++....+++++......-+.++.+++ .+...++.+..=.+.
T Consensus 42 ~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~e--------------------re~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 42 DLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELE--------------------RELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Confidence 345555666666777777777777777777776666555544443 344444555555555
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 040943 192 QFKHLEEAHEKLKDQFRTC 210 (950)
Q Consensus 192 qf~hLeeah~kl~~qfr~s 210 (950)
++++++.+++..++++.-.
T Consensus 102 ~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 102 QLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666665554433
No 177
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=25.82 E-value=94 Score=31.94 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHH-HhhHH
Q 040943 203 LKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQ-LCNQA 252 (950)
Q Consensus 203 l~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~-mCnqa 252 (950)
|+.|+..+.+.|..||.-|||...+-...-++|.++ ||++++ .|..+
T Consensus 3 L~~ql~~~EknW~rEk~ELLdrfd~ER~eWE~Q~ke---mq~kieql~~e~ 50 (141)
T PF14818_consen 3 LRWQLQHSEKNWSREKMELLDRFDRERQEWEQQWKE---MQRKIEQLQKEV 50 (141)
T ss_pred HhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhc
No 178
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.98 E-value=1.4e+03 Score=28.38 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhh
Q 040943 258 SRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSL 306 (950)
Q Consensus 258 s~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL 306 (950)
.+.--++.++.++...|+.-.-....++.+|+.|..+.+.++..+..++
T Consensus 295 ~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~ 343 (754)
T TIGR01005 295 ERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSL 343 (754)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777778888888888888888888877777766665554
No 179
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.68 E-value=3.1e+02 Score=29.50 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=16.1
Q ss_pred hhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHH
Q 040943 296 DKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKE 336 (950)
Q Consensus 296 d~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKE 336 (950)
|..-+.+...++.-+..+.+ |+.+|+.|...|..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~-------L~~~n~~L~~~l~~ 150 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVING-------LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33344445555444444333 55556655544333
No 180
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.21 E-value=5.6e+02 Score=29.79 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHH
Q 040943 4 IYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKES 83 (950)
Q Consensus 4 v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs 83 (950)
|..-+.+++..+.+|-.++-.=.+-+..--++-|.| .+.+.++..+..+++++++.-........++.-.
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~q----------le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~ 301 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIESREKYINNQ----------LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTR 301 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445566777777777777766666666666667776 5777788888888899988888888899999988
Q ss_pred HHHHhhhhhhhhhhchHHHHhhHHH
Q 040943 84 IIKCLGAANDKLRFDFNEKCRKLEE 108 (950)
Q Consensus 84 ~i~hL~aandkL~~~~~ek~~k~e~ 108 (950)
.+..++...+.++...++|....-|
T Consensus 302 ~L~~IseeLe~vK~emeerg~~mtD 326 (359)
T PF10498_consen 302 ELAEISEELEQVKQEMEERGSSMTD 326 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 8888888888888888887665543
No 181
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.10 E-value=1.5e+03 Score=28.49 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=89.1
Q ss_pred HHHHHHHHhhhhhHh--------hhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHH
Q 040943 15 NEKLRADCKSKSELC--------GNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIK 86 (950)
Q Consensus 15 iEkL~ae~r~K~~~~--------d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~ 86 (950)
++=++.+|--++++. .+|++--..|+.+|++++-+.+++-.-.+--++-|.+++.-.++|..+++ .++
T Consensus 568 ~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~----~L~ 643 (741)
T KOG4460|consen 568 TQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMK----KLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHH
Confidence 445566666666665 67777777888888888777666543333333334444445666666654 566
Q ss_pred HhhhhhhhhhhchHH----HHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcc
Q 040943 87 CLGAANDKLRFDFNE----KCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAP 162 (950)
Q Consensus 87 hL~aandkL~~~~~e----k~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ 162 (950)
|+-.++-+--++.+- .+--.-.+-+.|..+++-+..+-..| +-|+ ...+++..|+--+ +-.
T Consensus 644 ~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ--~~H~--------~~v~~al~K~~Y~-----l~~ 708 (741)
T KOG4460|consen 644 HSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQ--QQHM--------EKVLSALPKPTYI-----LSA 708 (741)
T ss_pred hcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHH--------HHHHhhccCCccc-----ccH
Confidence 666665554433333 33345677888999999888876663 3332 2233333333221 113
Q ss_pred hhhhhhhHHHHhhHHhhHHHHHHhh
Q 040943 163 KKLRERDDMLLKLEDENSKFENQLK 187 (950)
Q Consensus 163 ke~~~rddm~~klEeE~~~~e~qLk 187 (950)
+.++-.+..+.+|=.+|...-.+.|
T Consensus 709 ~Q~~~iqsiL~~L~~~i~~~~k~VK 733 (741)
T KOG4460|consen 709 YQRKCIQSILKELGEHIREMVKQVK 733 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777665544443
No 182
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.41 E-value=1.4e+03 Score=27.91 Aligned_cols=149 Identities=19% Similarity=0.339 Sum_probs=89.6
Q ss_pred HhhhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----------hhhhhhh-HHHHHHHHhHHhhh
Q 040943 486 EKTASLSEVVESLDHIEEQRVLMEKELQKNKEKLEEASRYQLCIEEKA----------KQMESDS-KRKLQEATDALDIA 554 (950)
Q Consensus 486 EkvAsL~rriEsld~~Eeq~~lMQkELd~yKEMLEeSSr~Ql~Lkeq~----------lq~E~dl-KekL~e~~daLD~A 554 (950)
+.++.+....|.|--+|+...-||+.|++-.+--.+--.--+.|+... .-.||.. +-.|..+.-+|.+|
T Consensus 242 ehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kA 321 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKA 321 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 456667777777888888888888888755443222222222222222 2333332 22577888889998
Q ss_pred hHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhh--------hhhhhh
Q 040943 555 NSELAEKTSEGHQIEFELWIWKSIAERLKFELEENQELRKELEASLLAQVEVGEVIKQENCGLTHS--------LEERDS 626 (950)
Q Consensus 555 nsELaek~~E~s~~Efel~~wKs~~e~LK~~leEn~~lrreleaSLLaqvE~ee~lkqEke~L~~~--------LeE~~~ 626 (950)
.-+|...- +...=--||.|=+.-+-+.+.|.+.. |-.-+--|..-.|.-+-++..+-++.-. ++++++
T Consensus 322 Ekele~nS--~wsaP~aLQ~wLq~T~E~E~q~~~kk--rqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~ 397 (575)
T KOG4403|consen 322 EKELEANS--SWSAPLALQKWLQLTHEVEVQYYNKK--RQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDH 397 (575)
T ss_pred HHHHHhcc--CCCCcHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHH
Confidence 88887643 44555678999998888877766654 3334444565666666777766555433 456666
Q ss_pred hhHHHHHHHHHH
Q 040943 627 RISKFQQQILSL 638 (950)
Q Consensus 627 ~i~~lq~qi~~l 638 (950)
+|.....-+..+
T Consensus 398 kIleak~al~ev 409 (575)
T KOG4403|consen 398 KILEAKSALSEV 409 (575)
T ss_pred HHHHHHHHHHHH
Confidence 665554443333
No 183
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.16 E-value=7.5e+02 Score=24.56 Aligned_cols=95 Identities=22% Similarity=0.240 Sum_probs=59.8
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhh
Q 040943 70 LFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQ 149 (950)
Q Consensus 70 ~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~e 149 (950)
.+++|...+..+.+=+.+|...+.+|+ ++....+.+....-...-........++..+...++|+.+++..+....
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~----~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLK----EQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666665 3333334444444444455566677788888889999999988887777
Q ss_pred hHhhhhhhhhhcchhhhhhhHHHHhhHH
Q 040943 150 KKCVKAESEAKAPKKLRERDDMLLKLED 177 (950)
Q Consensus 150 kkc~eaek~a~a~ke~~~rddm~~klEe 177 (950)
..|. -+++.++--+.+|-+
T Consensus 129 tq~~---------~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 129 TQYE---------HELRKKEREIEKLKE 147 (151)
T ss_pred HHHH---------HHHHHHHHHHHHHHH
Confidence 7664 456666666655543
No 184
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.90 E-value=9.5e+02 Score=27.27 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=0.0
Q ss_pred HhhhhhhhhhhhHHHHHHhHHHHHhh--hhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhh
Q 040943 267 VSEFRTHYDNTFAEYQDAKSQLECLT--NQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQK 344 (950)
Q Consensus 267 ~Se~K~~~~nv~~e~~ears~ie~Lt--~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~ 344 (950)
+..++..|+.+-.++..-..=+..|. ...+.+++.+...+..=+.--+++......||+++.++..-+..++.-
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e---- 86 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE---- 86 (314)
T ss_dssp -------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred cCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHh
Q 040943 345 AGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELE 412 (950)
Q Consensus 345 agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe 412 (950)
...|...|.+.-...-.+.-++..+....++=...+.-.+..|+
T Consensus 87 ------------------------~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 87 ------------------------LEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 185
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.90 E-value=4.5e+02 Score=24.01 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHhhHHHHHhhhhhHHHHhHhHHhhHHhhhh
Q 040943 362 EQMHRDCSANLRAKEAEWSSQMQQMDAEMNG 392 (950)
Q Consensus 362 Eq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~ 392 (950)
+.-|++-+.+||++..+=..++..+...++.
T Consensus 28 el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 28 ELKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666555555555444443333
No 186
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.82 E-value=5.3e+02 Score=23.46 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=25.0
Q ss_pred hchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhh
Q 040943 123 KNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAK 160 (950)
Q Consensus 123 ~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~ 160 (950)
....++..+..+..+|..++..+...+++..++++...
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777777777666655543
No 187
>PRK02119 hypothetical protein; Provisional
Probab=22.77 E-value=3.4e+02 Score=24.84 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=41.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHH
Q 040943 789 MIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLE 840 (950)
Q Consensus 789 mI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me 840 (950)
.|..+|..|..|+-++++++.-...+-..-+.-..++...+.++..|.+++.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999998888877777777777777777777776553
No 188
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.69 E-value=8.2e+02 Score=24.87 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=18.1
Q ss_pred hhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhH
Q 040943 178 ENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHER 218 (950)
Q Consensus 178 E~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~er 218 (950)
+......++.-..+.+.+++.-...+...+...++.|...+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33334444444444444444444444444444444444433
No 189
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=22.55 E-value=1.1e+03 Score=26.37 Aligned_cols=146 Identities=15% Similarity=0.162 Sum_probs=102.3
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhh-hhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhh
Q 040943 191 EQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSL-QTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSE 269 (950)
Q Consensus 191 Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sL-q~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se 269 (950)
.+++|+-.|...+..|--.. ..+..++-+++.+- =.+|++=++-.+.+++.+.-|.|-|..+.+ +..+.+|..
T Consensus 62 ~~~s~i~~sW~~il~QTE~i----sk~~~~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~--~~t~~eveK 135 (237)
T cd07685 62 MLSSPISQSWAVLVSQTETL----SQVLRKHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYT--KTTQQDIEK 135 (237)
T ss_pred ccCChHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 47788888888888775422 23333444433321 244555555666788889999999999888 888889999
Q ss_pred hhhhhhhhhHHHHHHhHHHHHhhhh------chhHHHHHHhhhhhhhHHHHHHHHHHHH----hHHhhHHHHHhHHHHHH
Q 040943 270 FRTHYDNTFAEYQDAKSQLECLTNQ------RDKEIAALRHSLGTKETFYKEMEYQATK----LERENQELLMSLKELQE 339 (950)
Q Consensus 270 ~K~~~~nv~~e~~ears~ie~Lt~~------rd~eIa~LR~sL~~Ket~~kE~ey~~~k----LEqEN~el~~sLKElQE 339 (950)
+|..|...+..++-||.+-+.=.+. +++++.+++..-..|-.|+==|---... --|..-+|+.+|-+++|
T Consensus 136 ~Kk~Y~~~c~~~e~AR~K~ekas~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy~q~lP~LLd~lQ~lnE 215 (237)
T cd07685 136 LKSQYRSLAKDSAQAKRKYQEASKDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQRILPGLLESLQSLHE 215 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999999999999999988875443 4677888777777777765443322221 12456788999999998
Q ss_pred HHh
Q 040943 340 AQI 342 (950)
Q Consensus 340 aqI 342 (950)
..|
T Consensus 216 ~~v 218 (237)
T cd07685 216 EMV 218 (237)
T ss_pred HHH
Confidence 654
No 190
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.25 E-value=4.7e+02 Score=26.78 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=51.2
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhh
Q 040943 226 SSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHS 305 (950)
Q Consensus 226 ~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~s 305 (950)
+++...++.+.++..-.+.-+.|=+..|.+ +...+..-+..=+.||..
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~--------------------------------l~~~a~~~~~~Q~~Lr~~ 69 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIV--------------------------------LLALAKRNEEAQAQLRQQ 69 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------------------------HHHHHHHHHHHHHHHHHH
Confidence 566666677766666666555555544443 111122224556788888
Q ss_pred hhhhhHHHHHHHHHHHHhHHhhHHHHH
Q 040943 306 LGTKETFYKEMEYQATKLERENQELLM 332 (950)
Q Consensus 306 L~~Ket~~kE~ey~~~kLEqEN~el~~ 332 (950)
++.=.+...--+..+.+|-.||+.|+.
T Consensus 70 ~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 70 LAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 888888888899999999999999985
No 191
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.82 E-value=6.8e+02 Score=26.09 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=26.2
Q ss_pred HhhhHhHHHHHHHhhHHhhhHHhhhhcccccccccchhhHHHHHHHHHHHh
Q 040943 854 RSENRKLLEDVLKLSSERENLLGFLGGLGDRVSKFSDEDMQLMEMLGRLVQ 904 (950)
Q Consensus 854 k~en~~l~~~~~~lssEr~~Ll~~~~gl~d~i~~~s~~D~~Lm~~L~~~~q 904 (950)
..+++.|...|..|-++-..|-.-+.+++|.+..+.-.+.+|+..+.++.+
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~e 138 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Confidence 334444444444444444444444455555566666666666665555543
No 192
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.59 E-value=1.1e+03 Score=25.94 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhh
Q 040943 41 LKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLR 96 (950)
Q Consensus 41 ~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~ 96 (950)
.-|++-+...+-|.+|-..-.++|- ++..-.+.=|.+|+...+.+++.+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLr-------qI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELR-------QINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555555553 233334556777887777777755
No 193
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=21.36 E-value=1.2e+03 Score=26.48 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=60.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhh--chHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHH
Q 040943 60 KTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRF--DFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAE 137 (950)
Q Consensus 60 k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~--~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~e 137 (950)
-..+|..+.+....|...+..-++++..|-.+|+++.. ..+.-....+.--..|..|.+.-.+-...+++-..+|..-
T Consensus 256 f~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~ay~~y~el~~nl~eG~kFY~dL 335 (353)
T cd09236 256 FDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAFLQSRKGDPATKERERALQSLDLAYFKYKEIVSNLDEGRKFYNDL 335 (353)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999821 1222233444444455556665566666666667777766
Q ss_pred Hhhhhhhhhh
Q 040943 138 IEGLKGLLSA 147 (950)
Q Consensus 138 i~~lk~~ls~ 147 (950)
..-+..+...
T Consensus 336 ~~~~~~~~~~ 345 (353)
T cd09236 336 AKILSQFRDA 345 (353)
T ss_pred HHHHHHHHHH
Confidence 6555554443
No 194
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=21.28 E-value=1e+03 Score=25.56 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=73.2
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchH--HHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHH
Q 040943 60 KTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFN--EKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAE 137 (950)
Q Consensus 60 k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~--ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~e 137 (950)
-.+++..+.++...|..++..=+.+|..+..+|+.+...-. ......+.=...|..|.+-..+...++..=+.+|..-
T Consensus 195 f~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a~~~y~el~~~l~eG~~FY~~L 274 (296)
T PF13949_consen 195 FEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAAYDAYKELSSNLEEGLKFYNDL 274 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56788889999999999999999999999999999965442 2235555556667777777777888888888899988
Q ss_pred HhhhhhhhhhhhhHh
Q 040943 138 IEGLKGLLSASQKKC 152 (950)
Q Consensus 138 i~~lk~~ls~~ekkc 152 (950)
...+..++.....=|
T Consensus 275 ~~~~~~l~~~~~~f~ 289 (296)
T PF13949_consen 275 LEILNKLQQKVEDFC 289 (296)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877665544
No 195
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.14 E-value=1.5e+02 Score=30.00 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=45.0
Q ss_pred HhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHH
Q 040943 267 VSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQ 338 (950)
Q Consensus 267 ~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQ 338 (950)
+|+||++|-+....- + -.++.-..+|..+|+.+.+.++..++++-++..=+-|...|+..|.++.
T Consensus 57 Ls~LK~~y~~~~~~~----~---~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 57 LSELKRRYRKKQSDP----S---PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHcCCCCC----C---ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477787775432211 1 2223334458999999999999999998888877777777777666665
No 196
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.97 E-value=1.3e+03 Score=26.39 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHHHHHh
Q 040943 822 EAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLEDVLKL 867 (950)
Q Consensus 822 eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~~~~l 867 (950)
..+|..++.+++++.+++. -.-+.+++|+.+-..|-..+..+
T Consensus 213 ~EeL~~~Eke~~e~~~~i~----e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERIT----EMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666442 22233444444444444443333
No 197
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.76 E-value=4.1e+02 Score=24.19 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=40.5
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhh
Q 040943 262 YLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGT 308 (950)
Q Consensus 262 ~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~ 308 (950)
-||++++.++...+.+..++.-.-..+..|+.-||+-+-.|.....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e 48 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEE 48 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999998887765443
No 198
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.62 E-value=1.4e+03 Score=26.74 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHH-HhhHHhhhHHHHhhHHHHHHhhhhhhhhh
Q 040943 199 AHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQ-LCNQALSHEESRRKYLEVQVSEFRTHYDN 276 (950)
Q Consensus 199 ah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~-mCnqaLahEEs~rK~lE~e~Se~K~~~~n 276 (950)
.+-.|+--+|+--|.| .+=++++-++.+++.+.....+.+=..|| =--.+|..=+||-|+|-.++-.+-..|.-
T Consensus 210 VlPQLKVt~k~DakDW----R~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~ 284 (384)
T KOG0972|consen 210 VLPQLKVTLKQDAKDW----RLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRR 284 (384)
T ss_pred hhhhheehhccccHHH----HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444555 45678888888888887766665555554 22345555566666666655444443333
Done!