Query 040943
Match_columns 950
No_of_seqs 31 out of 33
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.0 0.014 4.8E-07 56.1 34.9 59 1-59 1-59 (284)
2 1c1g_A Tropomyosin; contractIl 97.8 0.025 8.6E-07 54.3 33.6 27 388-414 251-277 (284)
3 1i84_S Smooth muscle myosin he 97.2 0.00075 2.5E-08 82.7 9.8 15 7-21 858-872 (1184)
4 1i84_S Smooth muscle myosin he 97.1 0.0011 3.7E-08 81.3 9.9 27 321-348 1140-1166(1184)
5 3na7_A HP0958; flagellar bioge 90.8 9.6 0.00033 39.3 17.3 128 99-230 30-157 (256)
6 3vkg_A Dynein heavy chain, cyt 90.7 56 0.0019 45.2 28.2 128 784-911 2010-2144(3245)
7 3vkg_A Dynein heavy chain, cyt 90.2 17 0.00057 50.0 22.8 97 170-284 2014-2110(3245)
8 3na7_A HP0958; flagellar bioge 86.3 33 0.0011 35.3 19.2 27 783-809 99-125 (256)
9 2dfs_A Myosin-5A; myosin-V, in 86.3 6 0.00021 48.9 14.1 119 70-190 922-1043(1080)
10 2v66_B Nuclear distribution pr 81.7 5.3 0.00018 37.8 8.5 84 266-359 4-87 (111)
11 2dfs_A Myosin-5A; myosin-V, in 76.6 22 0.00077 44.0 14.1 60 170-229 984-1043(1080)
12 2fxo_A Myosin heavy chain, car 75.5 55 0.0019 30.8 14.2 95 99-206 11-105 (129)
13 3ol1_A Vimentin; structural ge 70.2 41 0.0014 31.5 11.2 86 42-145 21-106 (119)
14 3tnu_B Keratin, type II cytosk 64.7 31 0.0011 32.4 9.2 112 187-306 11-126 (129)
15 2v71_A Nuclear distribution pr 64.2 1.3E+02 0.0045 30.7 14.5 93 245-361 50-142 (189)
16 3hnw_A Uncharacterized protein 63.9 20 0.00069 34.6 7.9 63 276-338 65-130 (138)
17 3oja_B Anopheles plasmodium-re 62.9 58 0.002 36.3 12.5 30 310-339 550-579 (597)
18 3o0z_A RHO-associated protein 61.8 1.4E+02 0.0047 30.1 14.9 145 76-233 2-153 (168)
19 3tnu_A Keratin, type I cytoske 60.6 32 0.0011 32.4 8.6 111 188-306 14-128 (131)
20 2v71_A Nuclear distribution pr 60.4 1.5E+02 0.0053 30.2 19.3 135 380-519 23-159 (189)
21 2v0o_A FCHO2, FCH domain only 57.9 1.6E+02 0.0053 29.5 14.7 50 858-907 198-248 (276)
22 4gkw_A Spindle assembly abnorm 55.6 1.6E+02 0.0055 29.0 17.1 148 167-337 8-159 (167)
23 3s84_A Apolipoprotein A-IV; fo 55.1 2.1E+02 0.0072 30.2 22.1 126 258-400 125-257 (273)
24 3oja_B Anopheles plasmodium-re 54.2 46 0.0016 37.0 9.9 23 172-194 539-561 (597)
25 3nmd_A CGMP dependent protein 51.1 29 0.00098 30.8 5.9 29 388-416 40-68 (72)
26 3swk_A Vimentin; cytoskeleton, 49.9 98 0.0034 27.7 9.4 39 105-143 46-84 (86)
27 2eqb_B RAB guanine nucleotide 49.3 69 0.0023 29.8 8.4 60 279-340 5-67 (97)
28 3etw_A Adhesin A; antiparallel 49.0 61 0.0021 31.1 8.3 75 192-289 10-88 (119)
29 3ol1_A Vimentin; structural ge 48.9 1E+02 0.0035 28.9 9.8 66 213-292 31-96 (119)
30 2efr_A General control protein 46.9 2.3E+02 0.0078 28.1 15.7 129 41-207 7-135 (155)
31 3swk_A Vimentin; cytoskeleton, 41.5 83 0.0028 28.1 7.6 71 216-304 14-84 (86)
32 2e7s_A RAB guanine nucleotide 41.2 1.2E+02 0.0041 29.7 9.1 89 104-205 42-131 (135)
33 3nmd_A CGMP dependent protein 40.4 48 0.0016 29.4 5.7 43 55-97 26-68 (72)
34 1x79_B RAB GTPase binding effe 38.0 2.1E+02 0.0072 27.2 10.0 87 794-880 5-95 (112)
35 1dh3_A Transcription factor CR 36.7 52 0.0018 27.3 5.1 36 304-339 15-50 (55)
36 3qh9_A Liprin-beta-2; coiled-c 33.1 78 0.0027 28.7 5.9 55 96-150 11-68 (81)
37 2z0v_A SH3-containing GRB2-lik 33.1 4E+02 0.014 26.9 12.8 66 313-384 164-229 (240)
38 1t2k_D Cyclic-AMP-dependent tr 32.7 1.4E+02 0.0047 24.8 7.1 41 299-340 11-51 (61)
39 3hnw_A Uncharacterized protein 32.6 2.1E+02 0.0072 27.6 9.4 63 3-65 65-127 (138)
40 3qh9_A Liprin-beta-2; coiled-c 32.6 62 0.0021 29.3 5.2 25 388-412 54-78 (81)
41 2v66_B Nuclear distribution pr 31.1 3.1E+02 0.011 25.9 10.0 71 261-338 13-83 (111)
42 3iv1_A Tumor susceptibility ge 30.7 1.4E+02 0.005 26.7 7.2 68 88-155 5-72 (78)
43 1ez3_A Syntaxin-1A; three heli 30.6 3E+02 0.01 24.8 11.7 103 350-456 20-122 (127)
44 1t6f_A Geminin; coiled-coil, c 30.5 72 0.0025 25.1 4.5 30 46-75 5-34 (37)
45 2ocy_A RAB guanine nucleotide 30.4 4.2E+02 0.014 26.3 15.7 93 102-207 52-145 (154)
46 1wt6_A Myotonin-protein kinase 30.3 1.5E+02 0.0053 26.8 7.3 51 16-66 17-70 (81)
47 3i00_A HIP-I, huntingtin-inter 27.9 1.3E+02 0.0046 28.5 7.0 86 192-277 16-118 (120)
48 3s4r_A Vimentin; alpha-helix, 27.5 2.3E+02 0.0077 25.7 8.1 20 320-339 25-44 (93)
49 2wt7_A Proto-oncogene protein 27.0 2.2E+02 0.0075 23.8 7.4 41 299-340 12-52 (63)
50 2no2_A HIP-I, huntingtin-inter 26.3 3.4E+02 0.012 25.2 9.3 73 23-95 29-101 (107)
51 1x8y_A Lamin A/C; structural p 26.2 2.3E+02 0.0077 25.2 7.8 50 136-187 3-52 (86)
52 1hjb_A Ccaat/enhancer binding 25.8 1.9E+02 0.0064 26.2 7.2 56 295-360 20-75 (87)
53 3vp9_A General transcriptional 24.5 2.1E+02 0.0073 26.3 7.4 38 351-402 52-89 (92)
54 2eqb_B RAB guanine nucleotide 24.4 4.3E+02 0.015 24.6 10.1 31 382-412 6-36 (97)
55 4fla_A Regulation of nuclear P 24.3 5.1E+02 0.017 25.4 11.3 107 134-242 44-150 (152)
56 2zxx_A Geminin; coiled-coil, c 23.5 2.8E+02 0.0097 25.0 7.8 55 573-631 16-74 (79)
57 3a7p_A Autophagy protein 16; c 22.6 2E+02 0.0067 28.7 7.2 62 53-114 66-130 (152)
58 2w6a_A ARF GTPase-activating p 22.3 93 0.0032 26.9 4.2 35 826-860 26-60 (63)
59 3twe_A Alpha4H; unknown functi 22.2 80 0.0027 23.0 3.2 23 2-24 4-26 (27)
60 3mq7_A Bone marrow stromal ant 22.1 5.4E+02 0.018 24.8 9.8 10 20-29 21-30 (121)
61 3mov_A Lamin-B1; LMNB1, B-type 21.9 1.9E+02 0.0064 26.4 6.5 75 223-306 12-88 (95)
62 3ryc_E Stathmin-4; alpha-tubul 21.6 5.9E+02 0.02 25.1 10.4 90 238-367 44-134 (143)
63 2efl_A Formin-binding protein 21.5 6.3E+02 0.021 25.4 22.9 14 894-907 252-265 (305)
64 3bas_A Myosin heavy chain, str 20.6 4.5E+02 0.015 23.3 9.3 46 294-339 18-63 (89)
65 3bas_A Myosin heavy chain, str 20.5 4.5E+02 0.015 23.3 8.9 46 99-144 12-57 (89)
66 1deq_A Fibrinogen (alpha chain 20.2 8.3E+02 0.028 27.6 12.2 110 226-394 52-161 (390)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.97 E-value=0.014 Score=56.06 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 040943 1 MERIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNE 59 (950)
Q Consensus 1 Me~v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~ 59 (950)
|+.+-+.|.-++.+++.+...+..-..-+..+.......-..+..+...+..+...+..
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDK 59 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777766666665555555555544444444444444444444333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.83 E-value=0.025 Score=54.33 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=11.6
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHhhh
Q 040943 388 AEMNGYRSELERKDAALKELKMELEDY 414 (950)
Q Consensus 388 ~el~~~~s~L~sKd~~i~eLq~ELe~c 414 (950)
..+..+...+..-...+..+..+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (284)
T 1c1g_A 251 KSIDDLEDELYAQKLKYKAISEELDHA 277 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433344444444444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.19 E-value=0.00075 Score=82.69 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 040943 7 ELDEIKAENEKLRAD 21 (950)
Q Consensus 7 EldeakaeiEkL~ae 21 (950)
|+.+.+.+++.++..
T Consensus 858 El~~L~~eL~el~~~ 872 (1184)
T 1i84_S 858 EMQAKDEELQRTKER 872 (1184)
T ss_dssp HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.09 E-value=0.0011 Score=81.28 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHhHHhhHHHHHhHHHHHHHHhhhcCcc
Q 040943 321 TKLERENQELLMSLKELQEAQIQKAGSS 348 (950)
Q Consensus 321 ~kLEqEN~el~~sLKElQEaqI~~agas 348 (950)
..++.+..+|...+.+|+ .+|.+.|++
T Consensus 1140 ~~le~q~~~L~~ele~L~-~~Ieel~~v 1166 (1184)
T 1i84_S 1140 NKAEKQKRDLSEELEALK-TELEDTLDT 1166 (1184)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence 334444445555555555 245555544
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.80 E-value=9.6 Score=39.31 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=85.8
Q ss_pred hHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHh
Q 040943 99 FNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDE 178 (950)
Q Consensus 99 ~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE 178 (950)
....+..++++..++-..+..+.....|.+.++.....+|+..+.-+...+.+-. .++.+|++.--..=+..++.+
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~----~v~~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS----EIKSERELRSLNIEEDIAKER 105 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCSSSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888888888888888888888888887777776653 344556555555455566666
Q ss_pred hHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhh
Q 040943 179 NSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQT 230 (950)
Q Consensus 179 ~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~ 230 (950)
+..+++.+.-..++.-.++.....+...+...+.++...+..+=..+..+..
T Consensus 106 i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~ 157 (256)
T 3na7_A 106 SNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKE 157 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666665555555544444444433
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.67 E-value=56 Score=45.18 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=92.3
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHH---HhhhcchHHHHHHHHhhhHhH
Q 040943 784 EEKKLMIVELEDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQL---EENLTTSDALVIELRSENRKL 860 (950)
Q Consensus 784 eeK~mmI~ElE~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~m---e~k~r~se~~v~eLk~en~~l 860 (950)
+-|+--+.++|.++...+.+|...+..+..+...-..++++.++...|...|.+.+ +.|+...+.+|.-|-.|+.--
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 56666777778888888788877777777777777777777777777777777777 578888999999999999999
Q ss_pred HHHHHHhhHHhhhHHhhh---hcccccccccchhh-HHHHHHHHHHHhhcccccc
Q 040943 861 LEDVLKLSSERENLLGFL---GGLGDRVSKFSDED-MQLMEMLGRLVQSLDSKSG 911 (950)
Q Consensus 861 ~~~~~~lssEr~~Ll~~~---~gl~d~i~~~s~~D-~~Lm~~L~~~~q~~d~~~g 911 (950)
-+.+..|.....+|.|-+ .|+.--.|.|+..- ..|+..-...++..+.++.
T Consensus 2090 ~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~~~l~~~~Ip~s 2144 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFK 2144 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999998753 34444455666554 2344544444444443433
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.21 E-value=17 Score=49.98 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=76.1
Q ss_pred HHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHh
Q 040943 170 DMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC 249 (950)
Q Consensus 170 dm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mC 249 (950)
+-+.++|.+....+.+|.-++...+.|++-...|+++|..+.. |+..|-+++...+.+|+.-.+...+|-
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~----ek~~L~~e~~~~~~kl~rA~~Li~gL~------ 2083 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR----ETEQIKTESSKVKNKVDRSIALLDNLN------ 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhh------
Confidence 4567888888999999999999999999999999999987654 577788888888888887777766653
Q ss_pred hHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHH
Q 040943 250 NQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDA 284 (950)
Q Consensus 250 nqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ea 284 (950)
|=+.+-...+..|+..+.++..+|-=+
T Consensus 2084 --------~Ek~RW~~~~~~l~~~~~~L~GD~LLa 2110 (3245)
T 3vkg_A 2084 --------SERGRWEQQSENFNTQMSTVVGDVVLA 2110 (3245)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hccccHHHHHHHHHHHHHhccHHHHHH
Confidence 334456677778888888888877655
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.27 E-value=33 Score=35.35 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=11.5
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHh
Q 040943 783 IEEKKLMIVELEDEISNVQQKLELQEK 809 (950)
Q Consensus 783 ieeK~mmI~ElE~ei~~~q~kL~~~ee 809 (950)
|+.-+..|..+|++|-.+-..++..+.
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443333
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.27 E-value=6 Score=48.90 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=52.6
Q ss_pred HHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHH---HHhhhhhhhchhHHHHHHhHHHHHhhhhhhhh
Q 040943 70 LFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLV---LALDEANEKNIDQEQKVNVFKAEIEGLKGLLS 146 (950)
Q Consensus 70 ~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lv---laLde~~~~~~dqe~~~~~~~~ei~~lk~~ls 146 (950)
..-.|+..+.+=..-+......|..|......--.++..|...|. ..|+.....+...+.++....+||+.++..+.
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333344444555555444444456666666663 33333444455566777777777777777777
Q ss_pred hhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhH
Q 040943 147 ASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKK 190 (950)
Q Consensus 147 ~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~ 190 (950)
...+....+|.+....++ .-++.+..|+.||.+++.|+.-..
T Consensus 1002 ~~~ke~~~lee~~~~~~~--~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1002 QTQTEKKTIEEWADKYKH--ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666655544443 222555566666666665554443
No 10
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.65 E-value=5.3 Score=37.80 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhc
Q 040943 266 QVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKA 345 (950)
Q Consensus 266 e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~a 345 (950)
..++++.....+..+++.+|.++....+.-...|..|..-+.+=-.-...+.-.++.|||.|-+|-.+- -
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~----------R 73 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK----------R 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH----------H
Confidence 345566666666666666666666654443444444443333333344556667788888888876521 1
Q ss_pred CccchHHHHHHHhH
Q 040943 346 GSSSSLAKLRNKLR 359 (950)
Q Consensus 346 gas~sl~kLr~Klr 359 (950)
-+++||.-+-+||-
T Consensus 74 ~t~~SLeD~E~k~n 87 (111)
T 2v66_B 74 ATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHH
Confidence 24555666555553
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.62 E-value=22 Score=44.00 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=39.1
Q ss_pred HHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhh
Q 040943 170 DMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQ 229 (950)
Q Consensus 170 dm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq 229 (950)
..+..|+++...+++++.=.....+.||++|..+++.+..--..+..+...|=.++..|.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777778888888877655444455555555544444444
No 12
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=75.50 E-value=55 Score=30.84 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=72.5
Q ss_pred hHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHh
Q 040943 99 FNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDE 178 (950)
Q Consensus 99 ~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE 178 (950)
.++.+.+++++...|--+|......+.+++.+....-+|...|...|.+-.--|.++|. ++..|-..
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE-------------~~~~L~~~ 77 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE-------------RCDQLIKN 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHH
Confidence 45677888999999999999999999999999999999999999999887777777764 44455555
Q ss_pred hHHHHHHhhhhHHHhhhHHHHHHHHHHH
Q 040943 179 NSKFENQLKWKKEQFKHLEEAHEKLKDQ 206 (950)
Q Consensus 179 ~~~~e~qLkwk~Eqf~hLeeah~kl~~q 206 (950)
...++.+|+-..+.+-..++....|...
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~ 105 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555554443
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.22 E-value=41 Score=31.49 Aligned_cols=86 Identities=21% Similarity=0.263 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhh
Q 040943 42 KIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEAN 121 (950)
Q Consensus 42 ~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~ 121 (950)
.|.++|..+..++.+-..-.-+|.-++...++++.+..+- -. +....|.+..+|.--+|++.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E-~~-----------------~r~~~E~di~~lrK~lD~~~ 82 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE-ML-----------------QREEAENTLQSFRQDVDNAS 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HH-----------------HHHHHHHHHHHhhhcccHHH
Confidence 3556666666666666666666777777777777766431 11 11234677888888999999
Q ss_pred hhchhHHHHHHhHHHHHhhhhhhh
Q 040943 122 EKNIDQEQKVNVFKAEIEGLKGLL 145 (950)
Q Consensus 122 ~~~~dqe~~~~~~~~ei~~lk~~l 145 (950)
-.+.|+|.++.++++||.-||..-
T Consensus 83 l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 83 LARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 14
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.67 E-value=31 Score=32.44 Aligned_cols=112 Identities=23% Similarity=0.357 Sum_probs=48.9
Q ss_pred hhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHh----hHHhhhHHHHhhH
Q 040943 187 KWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC----NQALSHEESRRKY 262 (950)
Q Consensus 187 kwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mC----nqaLahEEs~rK~ 262 (950)
.|-+-+|..|..+..+--+.++.+|.| -+-+=-.|.+|+..|+|....-..|+.++.=. ..++..=...--.
T Consensus 11 ~~y~~K~eel~~~~~~~~~~l~~~k~E----i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~ 86 (129)
T 3tnu_B 11 SWYQTKYEELQQTAGRHGDDLRNTKHE----ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAE 86 (129)
T ss_dssp -----------------------CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888888777777788887755 34444467778887777765555555554311 1122222223334
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhh
Q 040943 263 LEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSL 306 (950)
Q Consensus 263 lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL 306 (950)
||+++...|.-......+|++.=. .-..=|.|||.-|..|
T Consensus 87 lE~eL~~~r~e~~~ql~EYq~Lln----vKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 87 LEEALQKAKQDMARLLREYQELMN----TKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhH
Confidence 677777777766666667765411 1112367777777766
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.22 E-value=1.3e+02 Score=30.70 Aligned_cols=93 Identities=14% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhH
Q 040943 245 RLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLE 324 (950)
Q Consensus 245 rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLE 324 (950)
.|.-|..-..+-.++-..|..++-..|+.|.+..++ .-...+.=.++|+.||.. ...+.-+++.||
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e-------~~~~~~~Lq~el~~l~~~-------~~~l~~~ireLE 115 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ-------SYKQVSVLEDDLSQTRAI-------KEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 333444444444455555666555555555444333 222223335567777743 444566778889
Q ss_pred HhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHH
Q 040943 325 RENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSV 361 (950)
Q Consensus 325 qEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~L 361 (950)
|.|-+|-..-. -+++|+.-+..||-..
T Consensus 116 q~NDdlEr~~R----------~~~~SleD~e~kln~a 142 (189)
T 2v71_A 116 QANDDLERAKR----------ATIMSLEDFEQRLNQA 142 (189)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHH----------HHHhhHHHHHHHHHHH
Confidence 99988876322 2456677777777544
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.92 E-value=20 Score=34.63 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=50.4
Q ss_pred hhhHHHHHHhHHHHHhhh---hchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHH
Q 040943 276 NTFAEYQDAKSQLECLTN---QRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQ 338 (950)
Q Consensus 276 nv~~e~~ears~ie~Lt~---~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQ 338 (950)
|+..+|-.++.+++.|.. ..++||.+|++-|.+..+=+.+....+.+|..+|.+|...+..|+
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655543 357899999999999999999999999999999998888888885
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.92 E-value=58 Score=36.27 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhHHhhHHHHHhHHHHHH
Q 040943 310 ETFYKEMEYQATKLERENQELLMSLKELQE 339 (950)
Q Consensus 310 et~~kE~ey~~~kLEqEN~el~~sLKElQE 339 (950)
+..+.+++.+...+-|||..+...+|++++
T Consensus 550 e~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 550 EKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555553
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=61.77 E-value=1.4e+02 Score=30.14 Aligned_cols=145 Identities=23% Similarity=0.259 Sum_probs=0.0
Q ss_pred hhhhhhHHHH-HHhhhhhhhhhhchH--HHHhhHHHhhHHHHHHhhhhh----hhchhHHHHHHhHHHHHhhhhhhhhhh
Q 040943 76 RSLTEKESII-KCLGAANDKLRFDFN--EKCRKLEEQNRVLVLALDEAN----EKNIDQEQKVNVFKAEIEGLKGLLSAS 148 (950)
Q Consensus 76 ~~L~eKEs~i-~hL~aandkL~~~~~--ek~~k~e~e~r~lvlaLde~~----~~~~dqe~~~~~~~~ei~~lk~~ls~~ 148 (950)
+..++|-..+ |.|.-+|++|++..+ .|.+|-..|-+.-+.+++.++ .++.-++.+--++.+++..|.+.|..-
T Consensus 2 ~~~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE 81 (168)
T 3o0z_A 2 SLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE 81 (168)
T ss_dssp --------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhh
Q 040943 149 QKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSL 228 (950)
Q Consensus 149 ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sL 228 (950)
..-|. ..-+++..|+.-+..+..-|+--+....+++..-++|.+-+-...||..+=.=-|.=++-++
T Consensus 82 r~~r~-------------q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 82 RRDRG-------------HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred hhhhh
Q 040943 229 QTSLD 233 (950)
Q Consensus 229 q~~Ld 233 (950)
|.+++
T Consensus 149 Q~~~e 153 (168)
T 3o0z_A 149 QQRLE 153 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
No 19
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.63 E-value=32 Score=32.43 Aligned_cols=111 Identities=22% Similarity=0.287 Sum_probs=44.7
Q ss_pred hhHHHhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHh----hHHhhhHHHHhhHH
Q 040943 188 WKKEQFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLC----NQALSHEESRRKYL 263 (950)
Q Consensus 188 wk~Eqf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mC----nqaLahEEs~rK~l 263 (950)
|-+-+|..|..+..+-.+.++.+|.| -+.+=-.|.+|+..|+|....-..|+.++.=. ..++..=...--.|
T Consensus 14 ~y~~K~eel~~~~~~~~~~l~~~k~E----i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~l 89 (131)
T 3tnu_A 14 WFFTKTEELNREVATNSELVQSGKSE----ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSV 89 (131)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777754 34444466777777777655544455544311 11222222233346
Q ss_pred HHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhh
Q 040943 264 EVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSL 306 (950)
Q Consensus 264 E~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL 306 (950)
|+++...|.-......+|++.=. .-..=|.|||.-|..|
T Consensus 90 E~eL~~~r~em~~ql~EYq~Ll~----vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 90 EEQLAQLRCEMEQQNQEYKILLD----VKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhH
Confidence 67777777666666667765411 1112366777777665
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.38 E-value=1.5e+02 Score=30.21 Aligned_cols=135 Identities=21% Similarity=0.286 Sum_probs=73.7
Q ss_pred hHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHh-hHHHHHHHHHHHHhHHHHHHHH
Q 040943 380 SSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEISVMLLELE-NDQEMLEKSLRCQRHLEEQAKQ 458 (950)
Q Consensus 380 ~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql~~qNeE~s~mllvl~-k~~E~le~S~r~Ql~lqeq~~q 458 (950)
..++..|..+++.|... | -.+=.+|..+|+.|....-+|..+|.-...=+-.++ |+.....++.+.+..|+..+.+
T Consensus 23 ~q~~~~le~El~EFqes--S-rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~ 99 (189)
T 2v71_A 23 KQSFQEARDELVEFQEG--S-RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 99 (189)
T ss_dssp HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666677777776542 2 233345666666666665555444443333233333 5666666767767777776655
Q ss_pred HhhhHHHHHhhhhhHHHHhHHHHHH-HHHhhhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 040943 459 IESDSERKLGEVSNALDIANLELAK-EREKTASLSEVVESLDHIEEQRVLMEKELQKNKEKL 519 (950)
Q Consensus 459 ~E~~~~eqLee~~~aL~~aqaelae-erEkvAsL~rriEsld~~Eeq~~lMQkELd~yKEML 519 (950)
+-.. ..+|....-.|-++|-++.- .|-.++||---=--|+..-+..-.|+-||+. |+.|
T Consensus 100 l~~~-~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l 159 (189)
T 2v71_A 100 TRAI-KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESL 159 (189)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5432 22333333333444444433 2444444443333677777888888888885 5444
No 21
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=57.91 E-value=1.6e+02 Score=29.50 Aligned_cols=50 Identities=8% Similarity=0.075 Sum_probs=23.7
Q ss_pred HhHHHHHHHhhHHhhhHH-hhhhcccccccccchhhHHHHHHHHHHHhhcc
Q 040943 858 RKLLEDVLKLSSERENLL-GFLGGLGDRVSKFSDEDMQLMEMLGRLVQSLD 907 (950)
Q Consensus 858 ~~l~~~~~~lssEr~~Ll-~~~~gl~d~i~~~s~~D~~Lm~~L~~~~q~~d 907 (950)
..+++..=.+-.+|-+.| +.|..++..+......+.+..+.++..+..||
T Consensus 198 ~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~id 248 (276)
T 2v0o_A 198 TETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANTT 248 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCC
Confidence 344444334555665544 34444444444333344444555555555555
No 22
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=55.59 E-value=1.6e+02 Score=28.98 Aligned_cols=148 Identities=24% Similarity=0.317 Sum_probs=94.6
Q ss_pred hhhHHHHhhHHhhHHHHHHhhhhHHHh----hhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhh
Q 040943 167 ERDDMLLKLEDENSKFENQLKWKKEQF----KHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDL 242 (950)
Q Consensus 167 ~rddm~~klEeE~~~~e~qLkwk~Eqf----~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edl 242 (950)
..|||+..|+.-...+...+..-++.+ +-|++-.+|+ ||+.-.---...|-++|--+.+++|.+|+--...+.
T Consensus 8 ~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKV-DQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk-- 84 (167)
T 4gkw_A 8 DKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKV-DQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK-- 84 (167)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH--
Confidence 457889999999999999998888865 4566666665 555544434455667777888888887764322110
Q ss_pred HHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHH
Q 040943 243 QNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATK 322 (950)
Q Consensus 243 q~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~k 322 (950)
++-.+---|.|.. ||+=| +-+..-+.-|++++||.- |-.||.-|..----.+|.=-.+.+
T Consensus 85 rn~~qQnQQSlDi----RKLrE------------LEADLKEKDsMVe~LT~T----iG~LrKELEdEklK~~E~MdSFE~ 144 (167)
T 4gkw_A 85 RNSQQQNQQSLDM----RKLGE------------LEADLKEKDSMVESLTET----IGILRKELENEKLKAAENMDSFEK 144 (167)
T ss_dssp HHHHHHHHHHHHH----HHTHH------------HHHTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhHhhhhH----HHHHH------------HHhHHhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112233322 34322 223778889999999987 999998776555455565566777
Q ss_pred hHHhhHHHHHhHHHH
Q 040943 323 LERENQELLMSLKEL 337 (950)
Q Consensus 323 LEqEN~el~~sLKEl 337 (950)
|-=||.-+-..|--|
T Consensus 145 LkvENE~vkerl~mY 159 (167)
T 4gkw_A 145 LSMENENLKEKIAHY 159 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhhhHhHHHHHHHH
Confidence 777777666555444
No 23
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=55.06 E-value=2.1e+02 Score=30.16 Aligned_cols=126 Identities=24% Similarity=0.294 Sum_probs=58.1
Q ss_pred HHhhHHHHHHhhhhhhhhhhhHHHHH-HhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHH
Q 040943 258 SRRKYLEVQVSEFRTHYDNTFAEYQD-AKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKE 336 (950)
Q Consensus 258 s~rK~lE~e~Se~K~~~~nv~~e~~e-ars~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKE 336 (950)
.-|.-+..-+.+|+.++.-...+|.+ +...++.|+.+=-+-...||. +|..--++|+..|.-
T Consensus 125 elr~k~~~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~~-----------------~l~~~~eeLr~~L~p 187 (273)
T 3s84_A 125 EFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKA-----------------RISASAEELRQRLAP 187 (273)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
Confidence 34445555577777777777666665 333445554442222333332 333333444444433
Q ss_pred HHHH---Hhhhc--CccchHHHHHHHhH-HHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhH
Q 040943 337 LQEA---QIQKA--GSSSSLAKLRNKLR-SVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERK 400 (950)
Q Consensus 337 lQEa---qI~~a--gas~sl~kLr~Klr-~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sK 400 (950)
+-+. +|.+. +...++..|-.+++ .+|.+.++-.-.--+..-.|..++++|..-|+-|-+.++.+
T Consensus 188 ~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~~~~~~~~~~ 257 (273)
T 3s84_A 188 LAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGDVEGH 257 (273)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhCcchhhHHhh
Confidence 3221 11110 11222333323332 24555666555555666778888777777777766666554
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.19 E-value=46 Score=37.04 Aligned_cols=23 Identities=35% Similarity=0.357 Sum_probs=11.5
Q ss_pred HHhhHHhhHHHHHHhhhhHHHhh
Q 040943 172 LLKLEDENSKFENQLKWKKEQFK 194 (950)
Q Consensus 172 ~~klEeE~~~~e~qLkwk~Eqf~ 194 (950)
+.+++.+...++.+++-.+++..
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHH
Confidence 44455555555555554444443
No 25
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.10 E-value=29 Score=30.83 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=23.6
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 040943 388 AEMNGYRSELERKDAALKELKMELEDYHS 416 (950)
Q Consensus 388 ~el~~~~s~L~sKd~~i~eLq~ELe~c~s 416 (950)
.=|..+-..|+-||..|.+|+.+|..+.|
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44677778888999999999999987765
No 26
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=49.92 E-value=98 Score=27.65 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=34.2
Q ss_pred hHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhh
Q 040943 105 KLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKG 143 (950)
Q Consensus 105 k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~ 143 (950)
..|.+..+|.--+|++.-...|+|.++.++++||.-||.
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667788888999999999999999999999998875
No 27
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.28 E-value=69 Score=29.82 Aligned_cols=60 Identities=30% Similarity=0.507 Sum_probs=48.8
Q ss_pred HHHHHHhHHHHHhhhh---chhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHH
Q 040943 279 AEYQDAKSQLECLTNQ---RDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEA 340 (950)
Q Consensus 279 ~e~~ears~ie~Lt~~---rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEa 340 (950)
.+|+.+|-+|..|..+ .|.++..|..-|..-...-.+.+....++++|..+|-.|| +.||
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL--FeEA 67 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL--FDEA 67 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3556666555555443 5788999999999999999999999999999999999999 6666
No 28
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=48.96 E-value=61 Score=31.05 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=49.1
Q ss_pred HhhhHHHHHHHHHHH----HHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHH
Q 040943 192 QFKHLEEAHEKLKDQ----FRTCKKEWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQV 267 (950)
Q Consensus 192 qf~hLeeah~kl~~q----fr~skkEW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~ 267 (950)
+|+.||.-+..|.+. |..-+. ..-+-+..|++++.+-..+.-|+.+-.+ ....
T Consensus 10 ~l~~Leae~q~L~~~E~qry~~eka-----------~AE~A~~~La~~~~l~~~i~er~~~i~~------------~~~~ 66 (119)
T 3etw_A 10 ELQALDAEYQNLANQEEARFNEERA-----------QADAARQALAQNEQVYNELSQRAQRLQA------------EANT 66 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhcc
Confidence 466777777777653 222221 1223455677777766666666653322 2266
Q ss_pred hhhhhhhhhhhHHHHHHhHHHH
Q 040943 268 SEFRTHYDNTFAEYQDAKSQLE 289 (950)
Q Consensus 268 Se~K~~~~nv~~e~~ears~ie 289 (950)
|-||..|++++++|++.+++|+
T Consensus 67 ~~yk~~y~~l~k~Y~~~~keLd 88 (119)
T 3etw_A 67 RFYKSQYQELASKYEDALKKLE 88 (119)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999884
No 29
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.86 E-value=1e+02 Score=28.85 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=41.5
Q ss_pred hhhHhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhh
Q 040943 213 EWEHERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLT 292 (950)
Q Consensus 213 EW~~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt 292 (950)
....++..|.-+|++++ ..++||+.+++ .|-+.|.-+|+++.-+|.-.++.+----|..+++++|+
T Consensus 31 ~~~~e~a~l~leldn~~-------~~~edfk~KyE-------~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 31 QLTNDKARVEVERDNLA-------EDIMRLREKLQ-------EEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHhhH-------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 44455666555555554 35667777776 24566777777777777766666666666666666654
No 30
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=46.90 E-value=2.3e+02 Score=28.12 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhh
Q 040943 41 LKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDFNEKCRKLEEQNRVLVLALDEA 120 (950)
Q Consensus 41 ~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~~ek~~k~e~e~r~lvlaLde~ 120 (950)
.++.+| +.+...|-+|++. +=..|..+-+++. .+..|+..++++.+.+.-.|-..
T Consensus 7 ~qlkea-------ae~ad~KyeEvaR-----------------~E~dLEraEERae-~aE~k~~eLEeeL~~v~~nlKsL 61 (155)
T 2efr_A 7 DKVEEL-------LSKNYHLENEVAR-----------------LKKLLERAEERAE-LSEGKSAELEEELKTVTNNLKSL 61 (155)
T ss_dssp HHHHHH-------HHHHHHHHHHHHH-----------------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHhHHHHHHHHH-----------------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc
Q ss_pred hhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHH
Q 040943 121 NEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAH 200 (950)
Q Consensus 121 ~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah 200 (950)
...-..-.++-..|...|..|..-|..++.+.-.||.. +.+||-++-.+++.|.=-++.|+.+.+-+
T Consensus 62 E~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERs-------------v~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 62 EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS-------------VTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 040943 201 EKLKDQF 207 (950)
Q Consensus 201 ~kl~~qf 207 (950)
...-..+
T Consensus 129 d~tl~el 135 (155)
T 2efr_A 129 KQLEDKV 135 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=41.53 E-value=83 Score=28.13 Aligned_cols=71 Identities=25% Similarity=0.303 Sum_probs=53.4
Q ss_pred HhHhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhc
Q 040943 216 HERSTLLDAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQR 295 (950)
Q Consensus 216 ~ers~LlDeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~r 295 (950)
.+++.|.-+|..++ ..++||+.+++ .|-+.|.-+|+++.-+|.-.++++----|.-.++++|+.
T Consensus 14 ~e~~~l~~e~dn~~-------~~~edfk~KyE-------~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e-- 77 (86)
T 3swk_A 14 NDKARVEVERDNLA-------EDIMRLREKLQ-------EEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE-- 77 (86)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--
Confidence 34555544444443 46678888876 577889999999999999999998888888899999875
Q ss_pred hhHHHHHHh
Q 040943 296 DKEIAALRH 304 (950)
Q Consensus 296 d~eIa~LR~ 304 (950)
||+-||.
T Consensus 78 --El~fLkk 84 (86)
T 3swk_A 78 --EIAFLKK 84 (86)
T ss_dssp --HHHHHTT
T ss_pred --HHHHHhh
Confidence 4777764
No 32
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.17 E-value=1.2e+02 Score=29.66 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=58.9
Q ss_pred hhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhh-hhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHH
Q 040943 104 RKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKG-LLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKF 182 (950)
Q Consensus 104 ~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~-~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~ 182 (950)
..|..+.-.|..+|.+...++..-|.......+|++.|-. ++..+-+-+..| .+. -..+|..|.++
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a-r~~------------~~~~e~r~~~L 108 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADA-RME------------KYAIEILNKRL 108 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-THH------------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------------HHHHHHHHHHH
Confidence 4677888889999999999999999999999999999965 455555555444 111 14577888888
Q ss_pred HHHhhhhHHHhhhHHHHHHHHHH
Q 040943 183 ENQLKWKKEQFKHLEEAHEKLKD 205 (950)
Q Consensus 183 e~qLkwk~Eqf~hLeeah~kl~~ 205 (950)
+.+|+-+..=+.-|++.+..|+.
T Consensus 109 ~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 109 TEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766666666655554
No 33
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.39 E-value=48 Score=29.41 Aligned_cols=43 Identities=33% Similarity=0.448 Sum_probs=34.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhh
Q 040943 55 RELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRF 97 (950)
Q Consensus 55 ~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~ 97 (950)
.-+..|.+||..-..+.++|+..|.+|+..|+.|.+.=|+++.
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566667766677789999999999999999999888874
No 34
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=38.05 E-value=2.1e+02 Score=27.17 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhhhchhHhHHhhHHHHHHHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhHHHH----HHHhhH
Q 040943 794 EDEISNVQQKLELQEKSLSHSKHQAQKIEAELALKQREMKNLTNQLEENLTTSDALVIELRSENRKLLED----VLKLSS 869 (950)
Q Consensus 794 E~ei~~~q~kL~~~ee~~s~~k~~a~~~eaEm~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l~~~----~~~lss 869 (950)
=++...+|..+....++++.....+.+++..+..+.-+++.=...|-.+..+++.++.+|+.--.-..++ +.+|+.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777778888888888888888887766667777788888888887654444433 345666
Q ss_pred HhhhHHhhhhc
Q 040943 870 ERENLLGFLGG 880 (950)
Q Consensus 870 Er~~Ll~~~~g 880 (950)
.|+.+=..++.
T Consensus 85 ~Re~V~~eL~r 95 (112)
T 1x79_B 85 SREQVSEELVR 95 (112)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHHHHH
Confidence 66665444443
No 35
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.69 E-value=52 Score=27.28 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=31.2
Q ss_pred hhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHH
Q 040943 304 HSLGTKETFYKEMEYQATKLERENQELLMSLKELQE 339 (950)
Q Consensus 304 ~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQE 339 (950)
.|=.-|-.|+.+++.+...|+.+|..|...+..|++
T Consensus 15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 15 ESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667899999999999999999999998888874
No 36
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.13 E-value=78 Score=28.68 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=45.5
Q ss_pred hhchHHHHh---hHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhh
Q 040943 96 RFDFNEKCR---KLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQK 150 (950)
Q Consensus 96 ~~~~~ek~~---k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ek 150 (950)
+.+++++++ .|--|.+.|-..+.+...-+.--|.++.+-++||+.|+.+|...+.
T Consensus 11 ~~~~ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 11 QREQEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 356677777 5667899999999999999999999999999999999999976654
No 37
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=33.13 E-value=4e+02 Score=26.95 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHH
Q 040943 313 YKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQ 384 (950)
Q Consensus 313 ~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~e 384 (950)
-.||+-...++++-+..+...+..+.+.. +..+.-|..=+.+-=..|+.|.+.|..-...|..++.
T Consensus 164 eeEl~~A~~~fe~~~e~~~~~m~~~~~~~------~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~ 229 (240)
T 2z0v_A 164 DEEVRQAVEKFEESKELAERSMFNFLEND------VEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRIS 229 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHST------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888777776432 2223333333444445699999999999888887663
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.74 E-value=1.4e+02 Score=24.78 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHH
Q 040943 299 IAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEA 340 (950)
Q Consensus 299 Ia~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEa 340 (950)
+|+.|+- .-|-.+..+++.+...|+.+|.+|..-+..|++-
T Consensus 11 ~AA~k~R-~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 11 AAASRSR-QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 4456688999999999999999999998888863
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.62 E-value=2.1e+02 Score=27.56 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 040943 3 RIYEELDEIKAENEKLRADCKSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEIS 65 (950)
Q Consensus 3 ~v~eEldeakaeiEkL~ae~r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~ 65 (950)
++..|+-.++.+++.|.+++..+...+-.||.....--.++.++..+++.+..+++.-..++.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999998888888887777666777777776666666555555554
No 40
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.60 E-value=62 Score=29.32 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=18.3
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHh
Q 040943 388 AEMNGYRSELERKDAALKELKMELE 412 (950)
Q Consensus 388 ~el~~~~s~L~sKd~~i~eLq~ELe 412 (950)
++|..++-+|..||+.|+.|+.+|-
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 6677777777777777777777764
No 41
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=31.11 E-value=3.1e+02 Score=25.91 Aligned_cols=71 Identities=17% Similarity=0.380 Sum_probs=53.0
Q ss_pred hHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHH
Q 040943 261 KYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQ 338 (950)
Q Consensus 261 K~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQ 338 (950)
..|..++-++|+.|....++ +-+++ +.=.+||..||..-.+=-.++.++|..+--||.-..-.-+||..+.
T Consensus 13 ~~L~~E~e~~k~K~~~~~~e---~~~~~----~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 13 QRLKYEVEALKEKLEHQYAQ---SYKQV----SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 35666777777766654332 22233 3336789999999888889999999999999999999999998876
No 42
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=30.68 E-value=1.4e+02 Score=26.73 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=46.3
Q ss_pred hhhhhhhhhhchHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhhhhhhhhHhhhh
Q 040943 88 LGAANDKLRFDFNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGLLSASQKKCVKA 155 (950)
Q Consensus 88 L~aandkL~~~~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ls~~ekkc~ea 155 (950)
|+|++||||....+++...-.|---|.-.=++-+.=-+-++.-|.-+.+|-+.+..-+..-..|-.|+
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998888887777766666666555555556555555555555444444444333
No 43
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.65 E-value=3e+02 Score=24.76 Aligned_cols=103 Identities=10% Similarity=0.136 Sum_probs=59.9
Q ss_pred hHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHhhhhHHHH
Q 040943 350 SLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDAALKELKMELEDYHSLTLQLKMQNEEIS 429 (950)
Q Consensus 350 sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe~c~s~~~Ql~~qNeE~s 429 (950)
.+..|++.+..|...|...-..-.+ +..=+.+|+.+++++...-..+-.+=..|..--..+++|+.......+ -..
T Consensus 20 ~i~~i~~~v~~l~~~~~~~L~~~~~-~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Ri---r~~ 95 (127)
T 1ez3_A 20 FIDKIAENVEEVKRKHSAILASPNP-DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRI---RKT 95 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHH---HHH
Confidence 3566666666666667765443332 334556777788887777777766666666555556666533211111 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHHHHHH
Q 040943 430 VMLLELENDQEMLEKSLRCQRHLEEQA 456 (950)
Q Consensus 430 ~mllvl~k~~E~le~S~r~Ql~lqeq~ 456 (950)
..-....+|+++...+-..|...++.|
T Consensus 96 q~~~L~~kf~e~m~~y~~~q~~yre~~ 122 (127)
T 1ez3_A 96 QHSTLSRKFVEVMSEYNATQSDYRERC 122 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344468887777777777766654
No 44
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=30.48 E-value=72 Score=25.14 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 040943 46 ANLKVEKQARELNEKTEEISEVKQLFEGLK 75 (950)
Q Consensus 46 a~~k~e~~~~E~~~k~eEi~~~k~~~e~L~ 75 (950)
|--+.+++-.++.+|.++|+.+|.-+++|.
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334568888899999999998888777775
No 45
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.40 E-value=4.2e+02 Score=26.35 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=72.0
Q ss_pred HHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhh-hhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhH
Q 040943 102 KCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKG-LLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENS 180 (950)
Q Consensus 102 k~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~-~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~ 180 (950)
....+..+.-.|..+|.+-..++..-|+......+|++.|-. ++..+-+=+.+| .+. -..+|..|.
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a-r~~------------~~~~e~r~~ 118 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA-RKE------------KYAIEILNK 118 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------------HHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------------HHHHHHHHH
Confidence 345688888889999999999999999999999999999965 555555555544 111 245788889
Q ss_pred HHHHHhhhhHHHhhhHHHHHHHHHHHH
Q 040943 181 KFENQLKWKKEQFKHLEEAHEKLKDQF 207 (950)
Q Consensus 181 ~~e~qLkwk~Eqf~hLeeah~kl~~qf 207 (950)
+++.+|+-+..-+.-|++....|+.-|
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888888877776543
No 46
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.28 E-value=1.5e+02 Score=26.82 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=38.4
Q ss_pred HHHHHHHhhhhhHhhhHHHHhHHHHH---HHHHHHHHHHHHHHHHhhhhhhHHH
Q 040943 16 EKLRADCKSKSELCGNLKKAHNEHLL---KIQEANLKVEKQARELNEKTEEISE 66 (950)
Q Consensus 16 EkL~ae~r~K~~~~d~Lkk~~~eq~~---~~qEa~~k~e~~~~E~~~k~eEi~~ 66 (950)
..|.++.++|.-+.+-|.+....+++ ++|+|.++...+..++...-.++..
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999888888877776654 7888888888877776666666543
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.90 E-value=1.3e+02 Score=28.53 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=46.5
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhHhHhHHhhhhhhhhhhhhhhhhh-------hhhhHHHHHHhhHHh-hhHHHHhhHH
Q 040943 192 QFKHLEEAHEKLKDQFRTCKKEWEHERSTLLDAISSLQTSLDSQTRI-------SGDLQNRLQLCNQAL-SHEESRRKYL 263 (950)
Q Consensus 192 qf~hLeeah~kl~~qfr~skkEW~~ers~LlDeI~sLq~~LdSqtr~-------~edlq~rl~mCnqaL-ahEEs~rK~l 263 (950)
+--||--..+.|+.+|..-+-|...-=+.|-+.|..|+.-|+-+... .+.|+..+.-+.... .++...+++.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~ 95 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLS 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44566667777777888777788888889999999999999998765 566777776553322 3444455555
Q ss_pred HH---------HHhhhhhhhhhh
Q 040943 264 EV---------QVSEFRTHYDNT 277 (950)
Q Consensus 264 E~---------e~Se~K~~~~nv 277 (950)
|+ .++.+|..|...
T Consensus 96 e~E~kAqa~Eerf~KLKe~yteL 118 (120)
T 3i00_A 96 EIERKAQANEQRYSKLKEKYSEL 118 (120)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 445566666443
No 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.48 E-value=2.3e+02 Score=25.66 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.4
Q ss_pred HHHhHHhhHHHHHhHHHHHH
Q 040943 320 ATKLERENQELLMSLKELQE 339 (950)
Q Consensus 320 ~~kLEqEN~el~~sLKElQE 339 (950)
..-|||+|..|.+-+..++.
T Consensus 25 VR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45699999999988887775
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.97 E-value=2.2e+02 Score=23.81 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=33.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHH
Q 040943 299 IAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEA 340 (950)
Q Consensus 299 Ia~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEa 340 (950)
+|+-|.- .-|-.+..+++.+...|+.+|..|...+..|++-
T Consensus 12 ~AA~rcR-~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 12 MAAAKCR-NRRRELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 5677788999999999999999999988888753
No 50
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=26.26 E-value=3.4e+02 Score=25.17 Aligned_cols=73 Identities=22% Similarity=0.207 Sum_probs=0.0
Q ss_pred hhhhhHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhh
Q 040943 23 KSKSELCGNLKKAHNEHLLKIQEANLKVEKQARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKL 95 (950)
Q Consensus 23 r~K~~~~d~Lkk~~~eq~~~~qEa~~k~e~~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL 95 (950)
|.|.++-..+.+..-.+..+.++....++.+-++|..+.+|+..++.-.+....+=..=-+-+.-+.+..+.|
T Consensus 29 ~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 29 REKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 51
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.22 E-value=2.3e+02 Score=25.18 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=26.1
Q ss_pred HHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhh
Q 040943 136 AEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLK 187 (950)
Q Consensus 136 ~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLk 187 (950)
.||++|++..++-+....++|.+. ...+..-+..+..+|.+..+++..+-
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~--~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSL--ARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp ---------CTTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999998888888888765 33445555556666665555544443
No 52
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.84 E-value=1.9e+02 Score=26.24 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=38.8
Q ss_pred chhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHH
Q 040943 295 RDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRS 360 (950)
Q Consensus 295 rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~ 360 (950)
|.+.=.+-|.|=..+-.=-.++..+...|++||..|+..+..|..- +..||+-|..
T Consensus 20 R~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E----------~~~Lr~ll~~ 75 (87)
T 1hjb_A 20 RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRE----------LSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 4444444444444444555788899999999999999988888753 5566666654
No 53
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=24.53 E-value=2.1e+02 Score=26.35 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHhhHHhhhhhhhhhhhHHH
Q 040943 351 LAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQMDAEMNGYRSELERKDA 402 (950)
Q Consensus 351 l~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eKL~~el~~~~s~L~sKd~ 402 (950)
+-.+|+++-.||++|+.--. +-.++|..++.+|++++.
T Consensus 52 mq~Ir~tvyeLE~~h~kmKq--------------~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 52 MQQIRNTVYERELTHRKMKD--------------AYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHcCC
Confidence 45689999999999997432 334677777777776653
No 54
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.45 E-value=4.3e+02 Score=24.57 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=16.2
Q ss_pred hHHhhHHhhhhhhhhhhhHHHHHHHHHHHHh
Q 040943 382 QMQQMDAEMNGYRSELERKDAALKELKMELE 412 (950)
Q Consensus 382 Q~eKL~~el~~~~s~L~sKd~~i~eLq~ELe 412 (950)
+++++...|+.+.+++.+.+..+..|+.+|.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~ 36 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIA 36 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444455555555555555555555555554
No 55
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.28 E-value=5.1e+02 Score=25.35 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=77.7
Q ss_pred HHHHHhhhhhhhhhhhhHhhhhhhhhhcchhhhhhhHHHHhhHHhhHHHHHHhhhhHHHhhhHHHHHHHHHHHHHhhhhh
Q 040943 134 FKAEIEGLKGLLSASQKKCVKAESEAKAPKKLRERDDMLLKLEDENSKFENQLKWKKEQFKHLEEAHEKLKDQFRTCKKE 213 (950)
Q Consensus 134 ~~~ei~~lk~~ls~~ekkc~eaek~a~a~ke~~~rddm~~klEeE~~~~e~qLkwk~Eqf~hLeeah~kl~~qfr~skkE 213 (950)
.++.|+.|-.=++.-. -+....-+..+-+=....++....|++=|..++..++-++-=.+-|+.+..-.+.++..+++-
T Consensus 44 vrq~Ia~LP~eVsd~s-~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~ 122 (152)
T 4fla_A 44 VRQKIASLPQEVQDVS-LLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKK 122 (152)
T ss_dssp HHHHHHTSCGGGTCGG-GGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccccCHH-HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777654443322 122223344444555666888899999999999999999999999999999999999998887
Q ss_pred hhHhHhHHhhhhhhhhhhhhhhhhhhhhh
Q 040943 214 WEHERSTLLDAISSLQTSLDSQTRISGDL 242 (950)
Q Consensus 214 W~~ers~LlDeI~sLq~~LdSqtr~~edl 242 (950)
-..=|. -++.|.++...|||+.-.+=||
T Consensus 123 leeyK~-Kl~rv~~vkkeL~~hi~sLPDl 150 (152)
T 4fla_A 123 LEEYKQ-KLARVTQVRKELKSHIQSLPDL 150 (152)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhcCCcc
Confidence 665554 4689999999999988766554
No 56
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.49 E-value=2.8e+02 Score=24.96 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhhhhhhHHH
Q 040943 573 WIWKSIAERLK----FELEENQELRKELEASLLAQVEVGEVIKQENCGLTHSLEERDSRISKF 631 (950)
Q Consensus 573 ~~wKs~~e~LK----~~leEn~~lrreleaSLLaqvE~ee~lkqEke~L~~~LeE~~~~i~~l 631 (950)
+-||-+|++=+ ..|+||..|+.+++. +-+-...+++++..|..++++...-.+-+
T Consensus 16 ~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~----~~eEi~~LkeEN~~L~el~~~~~~laevl 74 (79)
T 2zxx_A 16 QYWKEVAEQRRKALYEALKENEKLHKEIEQ----KDSEIARLRKENKDLAEVAEHVQYMAEVI 74 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999864 578888888887652 22333578899999988888665544433
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.56 E-value=2e+02 Score=28.70 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHhhhhhhhhhhch---HHHHhhHHHhhHHHH
Q 040943 53 QARELNEKTEEISEVKQLFEGLKRSLTEKESIIKCLGAANDKLRFDF---NEKCRKLEEQNRVLV 114 (950)
Q Consensus 53 ~~~E~~~k~eEi~~~k~~~e~L~~~L~eKEs~i~hL~aandkL~~~~---~ek~~k~e~e~r~lv 114 (950)
+.+.+..-..++..+..-+.+|+..+.+|...+-.|.+++..|...+ .+|.++++.|+..||
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 58
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.29 E-value=93 Score=26.93 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhHHHHhhhcchHHHHHHHHhhhHhH
Q 040943 826 ALKQREMKNLTNQLEENLTTSDALVIELRSENRKL 860 (950)
Q Consensus 826 ~akq~e~~~l~~~me~k~r~se~~v~eLk~en~~l 860 (950)
+||--..+.|++.|-..+|.+.-.|+.|.++|.+|
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 47778889999999999999999999999999887
No 59
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.17 E-value=80 Score=23.02 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 040943 2 ERIYEELDEIKAENEKLRADCKS 24 (950)
Q Consensus 2 e~v~eEldeakaeiEkL~ae~r~ 24 (950)
+++|+||.++...+-||+..+|.
T Consensus 4 delykeledlqerlrklrkklrs 26 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999888774
No 60
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.08 E-value=5.4e+02 Score=24.82 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=6.6
Q ss_pred HHHhhhhhHh
Q 040943 20 ADCKSKSELC 29 (950)
Q Consensus 20 ae~r~K~~~~ 29 (950)
.+||..|.++
T Consensus 21 ~ECrN~T~lL 30 (121)
T 3mq7_A 21 MEARNVTHLL 30 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhHHHHH
Confidence 4677777666
No 61
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.89 E-value=1.9e+02 Score=26.41 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhh--chhHHH
Q 040943 223 DAISSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQ--RDKEIA 300 (950)
Q Consensus 223 DeI~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~--rd~eIa 300 (950)
..|++|+...+|--+...+++.++.+ .++.=.+.--.||+++...|.--..-..+|++. |+++ =|.|||
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L------lnvKl~Le~EIa 82 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL------LDVKLALDMEIS 82 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q ss_pred HHHhhh
Q 040943 301 ALRHSL 306 (950)
Q Consensus 301 ~LR~sL 306 (950)
.-|..|
T Consensus 83 tYrkLL 88 (95)
T 3mov_A 83 AYRKLL 88 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 62
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=21.59 E-value=5.9e+02 Score=25.11 Aligned_cols=90 Identities=28% Similarity=0.467 Sum_probs=57.6
Q ss_pred hhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhhhhhhhHHHHHHH
Q 040943 238 ISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHSLGTKETFYKEME 317 (950)
Q Consensus 238 ~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~sL~~Ket~~kE~e 317 (950)
-.+++|.+|.- - |-|||.+|+++ +..|+.+|..+-..++.-+..-.+|.+--+
T Consensus 44 SleEIqkKLeA------A-EERRks~Ea~~--------------------lk~laekrehe~EvlqKa~Een~~F~k~ae 96 (143)
T 3ryc_E 44 SLEEIQKKLEA------A-EERRKYQEAEL--------------------LKHLAEKREHEREVIQKAIEENNNFIKMAK 96 (143)
T ss_dssp CHHHHHHHHHH------H-HHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH------H-HHHHHhHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888872 2 67899999965 677888999988889888888777866554
Q ss_pred HHH-HHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHH
Q 040943 318 YQA-TKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRD 367 (950)
Q Consensus 318 y~~-~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~ 367 (950)
-.. .|+| .-+|-+||+|.. ...+|+.|=++.+.|-|+
T Consensus 97 EkL~~KME--------~~kEnReA~laa-----l~erLkek~kha~eVrr~ 134 (143)
T 3ryc_E 97 EKLAQKME--------SNKENREAHLAA-----MLERLQEKDKHAEEVRKN 134 (143)
T ss_dssp HHHHHHHH--------HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------HHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 433 2222 345556665532 344555555555555443
No 63
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=21.52 E-value=6.3e+02 Score=25.36 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhcc
Q 040943 894 QLMEMLGRLVQSLD 907 (950)
Q Consensus 894 ~Lm~~L~~~~q~~d 907 (950)
+..+.|...+..||
T Consensus 252 ~~~~~l~~~~~~id 265 (305)
T 2efl_A 252 KCLDGIVKAAESID 265 (305)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcC
Confidence 34444444444444
No 64
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.64 E-value=4.5e+02 Score=23.34 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=37.7
Q ss_pred hchhHHHHHHhhhhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHH
Q 040943 294 QRDKEIAALRHSLGTKETFYKEMEYQATKLERENQELLMSLKELQE 339 (950)
Q Consensus 294 ~rd~eIa~LR~sL~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQE 339 (950)
..+.++..++..+..-+...+|++.....|.++-.+|..+|.+..+
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe 63 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLED 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3577888999999888899999999999999999998887444433
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=20.48 E-value=4.5e+02 Score=23.32 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=33.9
Q ss_pred hHHHHhhHHHhhHHHHHHhhhhhhhchhHHHHHHhHHHHHhhhhhh
Q 040943 99 FNEKCRKLEEQNRVLVLALDEANEKNIDQEQKVNVFKAEIEGLKGL 144 (950)
Q Consensus 99 ~~ek~~k~e~e~r~lvlaLde~~~~~~dqe~~~~~~~~ei~~lk~~ 144 (950)
.++.+..++++...+.-.|......+.+++.+.-.+-+|...|-..
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777777777777665
No 66
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.18 E-value=8.3e+02 Score=27.57 Aligned_cols=110 Identities=9% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHhhHHhhhHHHHhhHHHHHHhhhhhhhhhhhHHHHHHhHHHHHhhhhchhHHHHHHhh
Q 040943 226 SSLQTSLDSQTRISGDLQNRLQLCNQALSHEESRRKYLEVQVSEFRTHYDNTFAEYQDAKSQLECLTNQRDKEIAALRHS 305 (950)
Q Consensus 226 ~sLq~~LdSqtr~~edlq~rl~mCnqaLahEEs~rK~lE~e~Se~K~~~~nv~~e~~ears~ie~Lt~~rd~eIa~LR~s 305 (950)
|-||..||.|. .||..|+.+=++.|+. ..+.+-++ +--+-.+-..
T Consensus 52 CrLqg~Ldk~e---r~~~~rIe~L~~~L~~--~s~s~~~~------------------------------~~y~~~~~~~ 96 (390)
T 1deq_A 52 CRMKGLIDEVD---QDFTSRINKLRDSLFN--YQKNSKDS------------------------------NTLTKNIVEL 96 (390)
T ss_pred chHHHHHHHhh---hhHHHHHHHHHHHHHH--HHHhhhHH------------------------------HHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHhHHhhHHHHHhHHHHHHHHhhhcCccchHHHHHHHhHHHHHhhHHHHHhhhhhHHHHhHhHHh
Q 040943 306 LGTKETFYKEMEYQATKLERENQELLMSLKELQEAQIQKAGSSSSLAKLRNKLRSVEQMHRDCSANLRAKEAEWSSQMQQ 385 (950)
Q Consensus 306 L~~Ket~~kE~ey~~~kLEqEN~el~~sLKElQEaqI~~agas~sl~kLr~Klr~LEq~Hr~Cs~~LraKEaEW~~Q~eK 385 (950)
+..+.+-.+..+-....+=.+.+.=-..||+-=..||+ .+..||+-++.+ ...|.+
T Consensus 97 lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~------~ir~Lq~~l~~q------------------~~kiqR 152 (390)
T 1deq_A 97 MRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ------RINLLQKNVRDQ------------------LVDMKR 152 (390)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHH------------------HHHHHH
Q ss_pred hHHhhhhhh
Q 040943 386 MDAEMNGYR 394 (950)
Q Consensus 386 L~~el~~~~ 394 (950)
|..||+.|+
T Consensus 153 LE~~Id~c~ 161 (390)
T 1deq_A 153 LEVDIDIKI 161 (390)
T ss_pred HHHHHHHHh
Done!