BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040944
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum
GN=rio2 PE=3 SV=1
Length = 522
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 1 MKLDVDVLRYLSKDDFKVLTAVETGMRNHEIVP 33
MKLD LRYLSKDDF+ L AVE GM+NHE+VP
Sbjct: 1 MKLDPKALRYLSKDDFRTLVAVEMGMKNHELVP 33
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 41 CFSQALEEHGFPVPSAVDCNRHCI 64
+ +AL E+GFPVP+ +D NRHCI
Sbjct: 161 AYMKALYENGFPVPTPIDYNRHCI 184
>sp|Q9BVS4|RIOK2_HUMAN Serine/threonine-protein kinase RIO2 OS=Homo sapiens GN=RIOK2
PE=1 SV=2
Length = 552
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 2 KLDVDVLRYLSKDDFKVLTAVETGMRNHEIVPFRTRAS 39
K++V LRY+S+DDF+VLTAVE GM+NHEIVP AS
Sbjct: 3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIAS 40
>sp|Q9CQS5|RIOK2_MOUSE Serine/threonine-protein kinase RIO2 OS=Mus musculus GN=Riok2
PE=1 SV=1
Length = 547
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 2 KLDVDVLRYLSKDDFKVLTAVETGMRNHEIVP 33
K++V LRY+S+DDF+VLTAVE GM+NHEIVP
Sbjct: 3 KVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVP 34
>sp|P40160|RIO2_YEAST Serine/threonine-protein kinase RIO2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIO2 PE=1 SV=1
Length = 425
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 1 MKLDVDVLRYLSKDDFKVLTAVETGMRNHEIVP 33
MKLD +RYL+ DDF+VL AVE G R+HE+VP
Sbjct: 1 MKLDTSHMRYLTTDDFRVLQAVEQGSRSHEVVP 33
>sp|Q9P7W5|RIO2_SCHPO Serine/threonine-protein kinase rio2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rio2 PE=3 SV=2
Length = 344
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 3 LDVDVLRYLSKDDFKVLTAVETGMRNHEIVP 33
L++ +RYLS +DF+ LTAVE G RNHE+VP
Sbjct: 4 LNIKAMRYLSAEDFRTLTAVEMGSRNHEVVP 34
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 41 CFSQALEEHGFPVPSAVDCNRHCI 64
F + L EHGFPVP+ +D +RHCI
Sbjct: 163 AFMKILHEHGFPVPAPIDHSRHCI 186
>sp|Q9NAL4|MED17_CAEEL Mediator of RNA polymerase II transcription subunit 17
OS=Caenorhabditis elegans GN=mdt-17 PE=3 SV=4
Length = 667
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 19 LTAVETGMRNHEIV-PFRTRASHCFSQALEEHGFPVPSAVDCNR 61
+T V T RN+ V PF+T ++ F AL+E G P P+ V CN+
Sbjct: 562 VTMVSTMSRNNNWVTPFQTMCANVF--ALDERGNPAPNIVLCNQ 603
>sp|B7KJX8|LEU1_CYAP7 2-isopropylmalate synthase OS=Cyanothece sp. (strain PCC 7424)
GN=leuA PE=3 SV=1
Length = 536
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 12 SKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNR 61
+K ++++ A G+ N++IV + H FS L+E GF + S D N+
Sbjct: 324 NKLTYEIMDAESIGLTNNQIVLGKLSGRHAFSTRLKELGFEL-SETDLNK 372
>sp|Q6FZE6|RPOA_BARQU DNA-directed RNA polymerase subunit alpha OS=Bartonella quintana
(strain Toulouse) GN=rpoA PE=3 SV=1
Length = 337
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 57 VDCNRHCIDDDEKGVIHKDPALNSKKEGVSEENQQNSEAGRGSEPDR-------HNASDK 109
+ +R+C+DD G+I D +L S VS + +N+ G+ + D+ + A +
Sbjct: 154 IPSDRNCVDDGRIGLIPVD-SLYSPIRKVSYK-VENTREGQVLDYDKLTLTIETNGAVNG 211
Query: 110 VGAIIFCEYFEIDLLVYFCSFREDDDESVNENDAEL 145
A+ F D L F +F E E V+E+D+EL
Sbjct: 212 EDAVAFAARILQDQLSLFVNFEEPQKEIVDESDSEL 247
>sp|Q9FDC7|RPOA_BARHE DNA-directed RNA polymerase subunit alpha OS=Bartonella henselae
(strain ATCC 49882 / Houston 1) GN=rpoA PE=3 SV=2
Length = 337
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 57 VDCNRHCIDDDEKGVIHKDPALNSKKEGVSEENQQNSEAGRGSEPDR-------HNASDK 109
V +R+CIDD G+I D +L S VS + +N+ G+ + D+ + A +
Sbjct: 154 VPSDRNCIDDARIGLIPVD-SLYSPIRKVSYK-VENTREGQVLDYDKLTLTVETNGAVNG 211
Query: 110 VGAIIFCEYFEIDLLVYFCSFREDDDESVNENDAEL 145
A+ F D L F +F+E + +V E+++EL
Sbjct: 212 EDALAFAARILQDQLALFINFKEPEKPTVEESNSEL 247
>sp|A1VN06|LEU1_POLNA 2-isopropylmalate synthase OS=Polaromonas naphthalenivorans (strain
CJ2) GN=leuA PE=3 SV=1
Length = 512
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 12 SKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCI 64
++D ++++ A + G ++IV + + F Q L+E G + S D N I
Sbjct: 308 ARDTYEIMRAEDVGWSANKIVLGKLSGRNAFKQRLQELGVAMESETDINNAFI 360
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,737,071
Number of Sequences: 539616
Number of extensions: 3029537
Number of successful extensions: 9170
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 9134
Number of HSP's gapped (non-prelim): 52
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)