Query 040944
Match_columns 188
No_of_seqs 133 out of 212
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 13:22:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0478 RIO-like serine/threon 100.0 7.4E-30 1.6E-34 226.3 5.4 106 1-121 1-128 (304)
2 KOG2268 Serine/threonine prote 99.9 2.8E-25 6E-30 203.6 3.3 141 1-162 1-168 (465)
3 PF09202 Rio2_N: Rio2, N-termi 99.8 6.7E-22 1.5E-26 146.3 1.6 66 8-88 1-67 (82)
4 cd05146 RIO3_euk RIO kinase fa 97.1 0.00026 5.7E-09 59.5 2.4 35 91-132 1-45 (197)
5 PF15013 CCSMST1: CCSMST1 fami 92.2 0.094 2E-06 39.3 1.9 25 122-151 42-66 (77)
6 KOG2268 Serine/threonine prote 91.3 0.11 2.5E-06 49.3 1.8 37 28-64 146-185 (465)
7 PF12802 MarR_2: MarR family; 90.6 0.16 3.4E-06 33.5 1.6 51 11-75 3-54 (62)
8 COG1522 Lrp Transcriptional re 90.5 0.17 3.6E-06 38.9 1.9 52 8-75 3-55 (154)
9 TIGR00498 lexA SOS regulatory 89.7 0.26 5.7E-06 40.0 2.5 67 8-88 1-69 (199)
10 cd05147 RIO1_euk RIO kinase fa 88.7 0.32 6.9E-06 39.5 2.3 27 92-118 2-31 (190)
11 KOG1165 Casein kinase (serine/ 82.5 0.77 1.7E-05 43.7 1.8 28 89-116 30-61 (449)
12 COG1321 TroR Mn-dependent tran 80.3 1.4 3.1E-05 35.9 2.4 61 11-88 4-65 (154)
13 cd05144 RIO2_C RIO kinase fami 78.8 1.7 3.8E-05 34.4 2.5 29 89-117 17-48 (198)
14 PF01726 LexA_DNA_bind: LexA D 78.3 0.76 1.7E-05 32.6 0.3 57 8-75 1-59 (65)
15 cd05119 RIO RIO kinase family, 78.3 1.7 3.7E-05 33.5 2.2 27 91-117 1-30 (187)
16 smart00344 HTH_ASNC helix_turn 75.8 2 4.4E-05 31.3 1.9 48 11-74 1-49 (108)
17 PF13463 HTH_27: Winged helix 75.5 1.4 3E-05 29.4 0.9 50 11-75 1-51 (68)
18 cd05145 RIO1_like RIO kinase f 74.0 2.6 5.6E-05 33.6 2.3 28 91-118 1-31 (190)
19 KOG4257 Focal adhesion tyrosin 71.2 2 4.3E-05 44.0 1.2 29 89-117 391-427 (974)
20 PF01047 MarR: MarR family; I 69.6 2.9 6.4E-05 27.3 1.4 49 11-75 1-50 (59)
21 PRK10857 DNA-binding transcrip 66.8 5.2 0.00011 32.8 2.6 61 13-88 6-68 (164)
22 TIGR00738 rrf2_super rrf2 fami 66.6 5.1 0.00011 30.2 2.4 57 16-88 11-68 (132)
23 cd07377 WHTH_GntR Winged helix 64.1 7.6 0.00016 25.1 2.6 55 17-88 9-66 (66)
24 TIGR02337 HpaR homoprotocatech 64.1 5.2 0.00011 29.8 2.0 50 10-75 25-75 (118)
25 TIGR02010 IscR iron-sulfur clu 63.6 6 0.00013 30.7 2.3 75 16-110 11-86 (135)
26 PRK11512 DNA-binding transcrip 63.4 4.9 0.00011 31.1 1.8 50 10-75 37-87 (144)
27 PF01325 Fe_dep_repress: Iron 63.3 5 0.00011 27.8 1.6 50 18-84 9-59 (60)
28 PF13730 HTH_36: Helix-turn-he 61.3 7.4 0.00016 25.3 2.1 48 10-69 2-51 (55)
29 PF01978 TrmB: Sugar-specific 61.1 2.2 4.8E-05 29.2 -0.5 50 10-75 5-55 (68)
30 PF13412 HTH_24: Winged helix- 61.1 5 0.00011 25.6 1.2 47 11-73 1-48 (48)
31 PRK03902 manganese transport t 60.9 6.5 0.00014 30.6 2.1 54 18-88 9-63 (142)
32 KOG1163 Casein kinase (serine/ 59.0 6.3 0.00014 36.5 1.9 24 93-116 21-48 (341)
33 TIGR01889 Staph_reg_Sar staphy 58.4 9.3 0.0002 28.5 2.5 54 10-75 22-76 (109)
34 COG1846 MarR Transcriptional r 58.1 8.9 0.00019 27.0 2.2 54 11-83 20-74 (126)
35 PRK03573 transcriptional regul 57.9 11 0.00023 29.0 2.8 51 10-75 28-79 (144)
36 KOG0193 Serine/threonine prote 57.0 7.9 0.00017 39.0 2.4 62 89-167 394-460 (678)
37 KOG0668 Casein kinase II, alph 57.0 4 8.6E-05 37.6 0.3 36 82-117 27-72 (338)
38 smart00090 RIO RIO-like kinase 55.1 10 0.00022 32.1 2.4 28 90-117 31-63 (237)
39 PF02082 Rrf2: Transcriptional 54.9 7.8 0.00017 27.6 1.5 57 16-88 11-68 (83)
40 TIGR02944 suf_reg_Xantho FeS a 54.8 11 0.00025 28.6 2.5 57 15-88 11-68 (130)
41 KOG0201 Serine/threonine prote 54.0 9.5 0.00021 37.0 2.3 25 93-117 19-47 (467)
42 PRK13777 transcriptional regul 53.0 9.8 0.00021 32.0 2.0 50 10-75 42-92 (185)
43 PRK11179 DNA-binding transcrip 52.7 9.5 0.00021 30.1 1.8 49 10-74 6-55 (153)
44 KOG0580 Serine/threonine prote 51.8 13 0.00028 34.0 2.7 32 89-120 24-59 (281)
45 PF04889 Cwf_Cwc_15: Cwf15/Cwc 51.7 12 0.00026 33.0 2.4 19 136-154 142-160 (244)
46 COG1718 RIO1 Serine/threonine 49.7 13 0.00027 33.8 2.3 31 91-121 52-85 (268)
47 PF13404 HTH_AsnC-type: AsnC-t 49.7 9.4 0.0002 24.8 1.1 41 11-67 1-41 (42)
48 KOG0595 Serine/threonine-prote 49.6 9.4 0.0002 36.7 1.5 30 90-119 13-46 (429)
49 TIGR01610 phage_O_Nterm phage 49.6 15 0.00033 27.2 2.4 56 8-75 20-80 (95)
50 PRK11920 rirA iron-responsive 47.8 17 0.00037 29.3 2.5 52 22-88 15-67 (153)
51 PRK04172 pheS phenylalanyl-tRN 47.4 10 0.00022 35.8 1.4 60 10-88 3-63 (489)
52 PRK12423 LexA repressor; Provi 45.5 16 0.00034 30.4 2.1 57 8-75 1-59 (202)
53 PRK10870 transcriptional repre 45.5 19 0.00042 29.3 2.6 51 11-75 53-104 (176)
54 KOG0591 NIMA (never in mitosis 44.1 14 0.0003 34.8 1.7 65 91-155 23-120 (375)
55 PF01163 RIO1: RIO1 family; I 43.4 12 0.00027 31.1 1.2 18 102-119 1-21 (188)
56 COG1959 Predicted transcriptio 42.6 21 0.00046 28.7 2.4 63 31-112 25-88 (150)
57 TIGR01884 cas_HTH CRISPR locus 42.3 16 0.00035 30.1 1.7 62 8-88 138-200 (203)
58 smart00347 HTH_MARR helix_turn 41.8 35 0.00075 23.4 3.1 50 10-75 7-57 (101)
59 COG3355 Predicted transcriptio 40.7 18 0.00039 29.3 1.7 53 8-75 22-75 (126)
60 cd07868 STKc_CDK8 Catalytic do 39.5 19 0.00041 29.8 1.7 28 90-117 4-37 (317)
61 PRK11169 leucine-responsive tr 39.4 12 0.00026 30.0 0.5 51 8-74 9-60 (164)
62 smart00421 HTH_LUXR helix_turn 39.3 16 0.00035 22.5 1.0 35 9-57 2-36 (58)
63 COG2512 Predicted membrane-ass 38.3 22 0.00048 31.5 2.0 52 9-75 191-243 (258)
64 cd05068 PTKc_Frk_like Catalyti 38.3 23 0.00051 28.2 2.0 27 91-117 10-39 (261)
65 cd05064 PTKc_EphR_A10 Catalyti 37.9 18 0.0004 29.2 1.3 28 90-117 8-42 (266)
66 cd05072 PTKc_Lyn Catalytic dom 37.8 26 0.00056 27.9 2.2 27 91-117 10-39 (261)
67 cd05039 PTKc_Csk_like Catalyti 36.7 29 0.00062 27.5 2.3 27 91-117 10-38 (256)
68 cd05075 PTKc_Axl Catalytic dom 36.3 25 0.00054 28.0 1.9 28 90-117 2-35 (272)
69 cd05034 PTKc_Src_like Catalyti 35.4 25 0.00054 27.9 1.7 26 91-116 10-38 (261)
70 PRK14879 serine/threonine prot 35.4 28 0.0006 27.3 2.0 23 93-115 2-26 (211)
71 smart00346 HTH_ICLR helix_turn 35.3 39 0.00085 23.5 2.6 43 30-88 19-62 (91)
72 KOG0597 Serine-threonine prote 35.2 23 0.0005 36.2 1.8 25 92-116 7-35 (808)
73 KOG0032 Ca2+/calmodulin-depend 34.2 29 0.00063 31.9 2.2 54 89-151 37-94 (382)
74 PF00069 Pkinase: Protein kina 34.1 20 0.00043 28.1 0.9 32 91-122 3-38 (260)
75 PF04492 Phage_rep_O: Bacterio 33.9 37 0.0008 26.1 2.4 57 6-74 25-86 (100)
76 PF09339 HTH_IclR: IclR helix- 33.4 29 0.00064 22.6 1.6 36 28-75 15-51 (52)
77 cd05071 PTKc_Src Catalytic dom 33.3 35 0.00077 27.4 2.3 27 91-117 10-39 (262)
78 cd05104 PTKc_Kit Catalytic dom 33.1 29 0.00063 30.4 1.9 28 90-117 38-74 (375)
79 PRK09954 putative kinase; Prov 32.7 31 0.00067 30.4 2.0 48 11-74 1-49 (362)
80 cd05067 PTKc_Lck_Blk Catalytic 32.4 34 0.00074 27.2 2.1 27 91-117 10-39 (260)
81 smart00345 HTH_GNTR helix_turn 32.3 50 0.0011 20.7 2.5 45 18-74 5-52 (60)
82 cd07869 STKc_PFTAIRE1 Catalyti 31.9 28 0.00061 28.8 1.5 26 92-117 10-39 (303)
83 TIGR03724 arch_bud32 Kae1-asso 31.7 37 0.0008 26.4 2.1 23 94-116 1-25 (199)
84 KOG0583 Serine/threonine prote 31.3 37 0.0008 30.9 2.3 29 90-118 20-52 (370)
85 cd07867 STKc_CDC2L6 Catalytic 30.6 31 0.00066 28.4 1.6 27 90-116 4-36 (317)
86 cd07845 STKc_CDK10 Catalytic d 30.4 29 0.00063 28.7 1.4 26 91-116 11-40 (309)
87 PF13203 DUF2201_N: Putative m 30.3 47 0.001 28.6 2.7 44 140-183 206-249 (292)
88 KOG4076 Regulator of ATP-sensi 30.2 79 0.0017 25.8 3.8 30 143-172 50-86 (121)
89 PRK11014 transcriptional repre 29.6 52 0.0011 25.6 2.6 61 13-88 6-68 (141)
90 cd05051 PTKc_DDR Catalytic dom 28.9 46 0.001 27.0 2.3 18 90-107 8-25 (296)
91 cd07853 STKc_NLK Catalytic dom 28.8 30 0.00065 29.8 1.3 26 90-115 3-32 (372)
92 cd05102 PTKc_VEGFR3 Catalytic 28.2 27 0.00059 29.3 0.9 27 90-116 10-45 (338)
93 cd05103 PTKc_VEGFR2 Catalytic 28.2 40 0.00086 28.8 1.9 27 90-116 10-45 (343)
94 KOG0592 3-phosphoinositide-dep 27.6 22 0.00048 35.5 0.3 29 89-117 75-107 (604)
95 cd05098 PTKc_FGFR1 Catalytic d 27.5 39 0.00085 28.0 1.7 28 90-117 21-59 (307)
96 PHA03211 serine/threonine kina 27.5 37 0.0008 31.6 1.7 34 91-124 173-214 (461)
97 cd08228 STKc_Nek6 Catalytic do 27.2 52 0.0011 26.1 2.3 26 91-116 6-35 (267)
98 PRK15090 DNA-binding transcrip 27.2 71 0.0015 27.0 3.2 44 16-75 17-61 (257)
99 cd05114 PTKc_Tec_Rlk Catalytic 27.1 51 0.0011 26.2 2.2 26 92-117 9-37 (256)
100 cd06611 STKc_SLK_like Catalyti 27.1 40 0.00088 27.1 1.7 34 81-118 3-40 (280)
101 cd05632 STKc_GRK5 Catalytic do 27.1 35 0.00075 28.0 1.3 25 93-117 6-34 (285)
102 cd05054 PTKc_VEGFR Catalytic d 26.8 44 0.00095 28.7 1.9 26 91-116 11-45 (337)
103 PRK10163 DNA-binding transcrip 26.4 95 0.0021 26.7 3.9 27 138-164 185-211 (271)
104 cd05612 STKc_PRKX_like Catalyt 26.2 29 0.00063 28.7 0.7 28 91-118 5-36 (291)
105 PTZ00284 protein kinase; Provi 26.0 37 0.00081 30.6 1.4 27 91-117 133-163 (467)
106 cd05084 PTKc_Fes Catalytic dom 25.9 49 0.0011 26.1 1.9 23 94-116 2-28 (252)
107 cd00092 HTH_CRP helix_turn_hel 25.8 44 0.00095 21.8 1.4 37 27-75 21-58 (67)
108 cd07872 STKc_PCTAIRE2 Catalyti 25.4 49 0.0011 27.4 1.9 27 91-117 10-40 (309)
109 cd07863 STKc_CDK4 Catalytic do 25.4 72 0.0016 25.7 2.8 27 91-117 4-34 (288)
110 cd05113 PTKc_Btk_Bmx Catalytic 25.4 58 0.0013 26.1 2.3 27 91-117 8-37 (256)
111 KOG0194 Protein tyrosine kinas 25.3 60 0.0013 31.4 2.7 29 90-118 160-196 (474)
112 PF08279 HTH_11: HTH domain; 24.9 39 0.00084 21.8 1.0 41 18-70 2-42 (55)
113 cd05105 PTKc_PDGFR_alpha Catal 24.8 44 0.00096 30.1 1.6 28 90-117 40-76 (400)
114 PRK09834 DNA-binding transcrip 24.7 85 0.0019 26.8 3.3 44 17-75 15-59 (263)
115 PF04545 Sigma70_r4: Sigma-70, 24.5 46 0.001 21.3 1.3 47 7-66 1-47 (50)
116 PTZ00263 protein kinase A cata 24.5 56 0.0012 27.7 2.1 29 90-118 21-53 (329)
117 cd00090 HTH_ARSR Arsenical Res 24.4 63 0.0014 20.4 1.9 46 13-75 7-53 (78)
118 PF04182 B-block_TFIIIC: B-blo 24.3 69 0.0015 22.7 2.3 50 12-75 1-51 (75)
119 cd05573 STKc_ROCK_NDR_like Cat 24.2 52 0.0011 27.6 1.9 27 91-117 5-35 (350)
120 cd05035 PTKc_Axl_like Catalyti 24.1 60 0.0013 25.7 2.1 28 90-117 2-36 (273)
121 cd06610 STKc_OSR1_SPAK Catalyt 23.9 61 0.0013 25.5 2.1 26 91-116 5-34 (267)
122 cd06628 STKc_MAPKKK_Byr2_like 23.8 53 0.0011 26.1 1.7 26 91-116 4-33 (267)
123 cd06629 STKc_MAPKKK_Bck1_like 23.8 55 0.0012 26.2 1.8 27 91-117 5-35 (272)
124 TIGR02172 Fb_sc_TIGR02172 Fibr 23.7 64 0.0014 27.0 2.3 23 93-115 7-29 (226)
125 PF14389 Lzipper-MIP1: Leucine 23.4 1.1E+02 0.0023 22.9 3.2 28 140-167 15-44 (88)
126 cd07878 STKc_p38beta_MAPK11 Ca 23.2 48 0.001 28.0 1.5 27 91-117 19-49 (343)
127 cd06631 STKc_YSK4 Catalytic do 23.2 55 0.0012 26.0 1.8 27 91-117 4-33 (265)
128 cd05096 PTKc_DDR1 Catalytic do 23.2 56 0.0012 26.9 1.8 17 91-107 9-25 (304)
129 KOG0197 Tyrosine kinases [Sign 22.9 56 0.0012 31.8 2.0 58 82-152 198-261 (468)
130 cd05085 PTKc_Fer Catalytic dom 22.9 64 0.0014 25.3 2.0 23 94-116 2-27 (250)
131 PF10007 DUF2250: Uncharacteri 22.9 52 0.0011 25.2 1.5 49 11-75 5-54 (92)
132 PF06072 Herpes_US9: Alphaherp 22.8 70 0.0015 23.2 2.0 21 128-152 1-21 (60)
133 PLN00034 mitogen-activated pro 22.8 63 0.0014 27.6 2.1 27 90-116 77-107 (353)
134 cd05611 STKc_Rim15_like Cataly 22.7 77 0.0017 25.1 2.5 25 93-117 2-30 (260)
135 cd05597 STKc_DMPK_like Catalyt 22.6 60 0.0013 27.6 1.9 27 91-117 5-35 (331)
136 cd05107 PTKc_PDGFR_beta Cataly 22.6 56 0.0012 29.5 1.9 29 89-117 39-76 (401)
137 smart00420 HTH_DEOR helix_turn 22.5 83 0.0018 19.1 2.1 44 16-75 3-47 (53)
138 cd07859 STKc_TDY_MAPK_plant Ca 22.4 43 0.00092 27.8 1.0 25 91-115 4-32 (338)
139 cd05631 STKc_GRK4 Catalytic do 22.4 62 0.0014 26.5 2.0 26 92-117 5-34 (285)
140 cd05059 PTKc_Tec_like Catalyti 22.0 63 0.0014 25.7 1.9 26 91-116 8-36 (256)
141 smart00221 STYKc Protein kinas 21.9 71 0.0015 24.1 2.0 29 90-118 2-34 (225)
142 PTZ00024 cyclin-dependent prot 21.9 55 0.0012 27.4 1.6 27 90-116 12-42 (335)
143 cd05626 STKc_LATS2 Catalytic d 21.8 51 0.0011 28.7 1.4 27 91-117 5-35 (381)
144 cd06625 STKc_MEKK3_like Cataly 21.7 68 0.0015 25.3 2.0 27 91-117 6-36 (263)
145 cd05592 STKc_nPKC_theta_delta 21.3 77 0.0017 26.7 2.3 24 94-117 2-29 (316)
146 PF08461 HTH_12: Ribonuclease 21.2 38 0.00082 23.9 0.4 25 59-88 34-59 (66)
147 TIGR02431 pcaR_pcaU beta-ketoa 21.2 1.2E+02 0.0027 25.3 3.6 45 19-75 12-57 (248)
148 cd05083 PTKc_Chk Catalytic dom 21.1 75 0.0016 25.2 2.1 28 90-117 9-38 (254)
149 cd05069 PTKc_Yes Catalytic dom 20.9 80 0.0017 25.2 2.2 26 91-116 10-38 (260)
150 cd07861 STKc_CDK1_euk Catalyti 20.8 64 0.0014 25.9 1.7 27 91-117 4-34 (285)
151 cd05616 STKc_cPKC_beta Catalyt 20.8 58 0.0013 27.4 1.5 27 91-117 4-34 (323)
152 cd05073 PTKc_Hck Catalytic dom 20.8 67 0.0014 25.6 1.8 27 90-116 9-38 (260)
153 cd06652 STKc_MEKK2 Catalytic d 20.7 54 0.0012 26.2 1.2 26 91-116 6-35 (265)
154 cd06626 STKc_MEKK4 Catalytic d 20.7 83 0.0018 24.7 2.3 28 91-118 4-35 (264)
155 PF11819 DUF3338: Domain of un 20.6 1.3E+02 0.0029 24.8 3.5 37 145-182 48-84 (138)
156 PTZ00036 glycogen synthase kin 20.6 56 0.0012 29.6 1.4 27 90-116 69-99 (440)
157 cd05587 STKc_cPKC Catalytic do 20.5 72 0.0016 26.9 2.0 27 91-117 4-34 (324)
158 PRK11050 manganese transport r 20.5 76 0.0016 25.3 2.0 42 30-88 50-92 (152)
159 PLN03225 Serine/threonine-prot 20.3 59 0.0013 31.2 1.6 26 90-115 135-168 (566)
160 KOG2270 Serine/threonine prote 20.3 81 0.0018 31.0 2.5 29 89-117 146-177 (520)
161 cd05070 PTKc_Fyn_Yrk Catalytic 20.3 72 0.0016 25.4 1.9 27 91-117 10-39 (260)
162 cd06630 STKc_MEKK1 Catalytic d 20.2 77 0.0017 25.1 2.0 27 91-117 4-34 (268)
163 cd06646 STKc_MAP4K5 Catalytic 20.2 56 0.0012 26.0 1.2 27 91-117 13-43 (267)
164 COG0478 RIO-like serine/threon 20.0 79 0.0017 29.3 2.3 44 27-73 144-190 (304)
No 1
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=99.96 E-value=7.4e-30 Score=226.31 Aligned_cols=106 Identities=27% Similarity=0.347 Sum_probs=97.9
Q ss_pred CCcchHHhcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCcc
Q 040944 1 MKLDVDVLRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALN 79 (188)
Q Consensus 1 MkL~ae~~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~ 79 (188)
|++.++.+++|+++|||||+|||.|||+|||||.++|.+++ +|+.+++. ++|++|.+ +||.|+ +
T Consensus 1 ~~~~~~~~~~l~~~D~rlLraiE~~mR~~e~VP~~~i~~~a--------r~~~~~~~----~~L~~L~~l~lv~r~---~ 65 (304)
T COG0478 1 MKLVAEAYPKLSKEDFRLLRAIEGGMRSHEWVPLELIKKRA--------RMDEEELL----YRLKRLDKLKLVSRR---T 65 (304)
T ss_pred CcchhhhhhhcCHHHHHHHHHHHhcccccccccHHHHHHHc--------CCCHHHHH----HHHHHHHhcCceecc---C
Confidence 56789999999999999999999999999999999999998 99977777 79999999 699985 8
Q ss_pred CCccceehh------------------hhcccccCcCCcCceeeccCC---CeeEEeeehhhh
Q 040944 80 SKKEGVSEE------------------NQQNSEAGRGSEPDRHNASDK---VGAIIFCEYFEI 121 (188)
Q Consensus 80 ~~YeGY~Lt------------------~alG~~IGVGKESDVYea~~~---~~aiKFh~~~~~ 121 (188)
.+|+||||| +++|++||||||||||.|.++ ++|+|||...-+
T Consensus 66 ~~y~Gy~lT~~GyD~LAL~~l~~r~~ve~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~Grt 128 (304)
T COG0478 66 ISYEGYQLTFSGYDALALHALVKRGIVEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRT 128 (304)
T ss_pred CcceeEEEEecchhHHHHHHHHHcChHHhhccccccCccceEEEEECCCCCEEEEEEeecCch
Confidence 999999988 899999999999999999654 999999998854
No 2
>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=2.8e-25 Score=203.59 Aligned_cols=141 Identities=32% Similarity=0.363 Sum_probs=103.4
Q ss_pred CCcchHHhcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCcc
Q 040944 1 MKLDVDVLRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALN 79 (188)
Q Consensus 1 MkL~ae~~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~ 79 (188)
|||+++.+|||+.+|||||+||||||||||.||..+|.+++ -++||.- . +.|+.|-| .||... .+
T Consensus 1 mKl~v~~mryLs~ddFRvLtAvEmgmrnHEiVP~~li~~ia----~ik~gg~----~----k~l~dL~KhkLia~~--r~ 66 (465)
T KOG2268|consen 1 MKLNVSVMRYLSRDDFRVLTAVEMGMRNHEIVPTPLIASIA----GIKGGGV----T----KVLSDLCKHKLIAYE--RN 66 (465)
T ss_pred CccchhhhhhhccchhHHHHHHHHhcccCccccHHHHHHHH----hhccCch----H----HHHHHHHHhHHHHhh--cc
Confidence 89999999999999999999999999999999999999986 3444432 2 35566666 587754 26
Q ss_pred CCccceehh------------------hhcccccCcCCcCceeeccCC---CeeEEeeehhhhhhhhhhccccCcCCcc-
Q 040944 80 SKKEGVSEE------------------NQQNSEAGRGSEPDRHNASDK---VGAIIFCEYFEIDLLVYFCSFREDDDES- 137 (188)
Q Consensus 80 ~~YeGY~Lt------------------~alG~~IGVGKESDVYea~~~---~~aiKFh~~~~~~~~~~~~~~~~~~~~~- 137 (188)
..|+||+|| .++|.+||||||||||.+.++ +.++|||..-.+ |||.=-+--
T Consensus 67 ~k~dGYRLTy~GyDyLAlktL~~R~~v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRt-------SFR~Vk~kRD 139 (465)
T KOG2268|consen 67 KKYDGYRLTYAGYDYLALKTLSNRGSVESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRT-------SFRNVKNKRD 139 (465)
T ss_pred ccccceEeeeccchHHHHHHHHhcchhhhhccccccccccceEEEecCCCCchhHHHHhhhhh-------hHHHhhhhhh
Confidence 789999998 789999999999999999666 788898876544 343211100
Q ss_pred --c--ccchHHHHHHHHHHHHHHHHhhCC
Q 040944 138 --V--NENDAELVKQIEKQRRRAVAAVGD 162 (188)
Q Consensus 138 --~--~e~~~~l~k~l~kqr~~a~aaa~~ 162 (188)
- .+--=--.-+|.-+|.=|.-.|+-
T Consensus 140 Y~r~r~~~sWlyLSRlaa~kEfafmkaL~ 168 (465)
T KOG2268|consen 140 YLRKRKSGSWLYLSRLAATKEFAFMKALY 168 (465)
T ss_pred hHhcCCccchhhhHHHHHHHHHHHHHHHH
Confidence 0 000012234677777777777743
No 3
>PF09202 Rio2_N: Rio2, N-terminal; InterPro: IPR015285 This N-terminal domain is found in RIO2 kinases, and is structurally homologous to the winged helix (wHTH) domain. It adopts a structure consisting of four alpha helices followed by two beta strands and a fifth alpha helix. The domain confers DNA binding properties to the protein, as per other winged helix domains []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A.
Probab=99.83 E-value=6.7e-22 Score=146.34 Aligned_cols=66 Identities=35% Similarity=0.539 Sum_probs=51.6
Q ss_pred hcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCcccee
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVS 86 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~ 86 (188)
+++|+++|||||+|||+|||||||||.++|.++| |++.+++. ++|++|.+ +||.++ +.+|+||+
T Consensus 1 ~r~L~~~d~rvL~aiE~gmk~hE~VP~~~I~~~s--------~l~~~~~~----~~L~~L~~~kLv~~~---~~~Y~GYr 65 (82)
T PF09202_consen 1 LRYLSKEDFRVLRAIEMGMKNHEWVPLELIEKIS--------GLSEGEVE----KRLKRLVKLKLVSRR---NKPYDGYR 65 (82)
T ss_dssp --T--HHHHHHHHHHHTTTTT-SSEEHHHHHHHH--------T--HHHHH----HHHHHHHHTTSEEEE----SSS-EEE
T ss_pred CCcCCHHHHHHHHHHHHcccCCccCCHHHHHHHh--------CcCHHHHH----HHHHHHHhcCCcccc---CCCcceEE
Confidence 6899999999999999999999999999999998 99955555 79999999 699996 89999999
Q ss_pred hh
Q 040944 87 EE 88 (188)
Q Consensus 87 Lt 88 (188)
||
T Consensus 66 LT 67 (82)
T PF09202_consen 66 LT 67 (82)
T ss_dssp E-
T ss_pred Ee
Confidence 99
No 4
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=97.14 E-value=0.00026 Score=59.52 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.8
Q ss_pred cccccCcCCcCceeeccC----------CCeeEEeeehhhhhhhhhhccccC
Q 040944 91 QNSEAGRGSEPDRHNASD----------KVGAIIFCEYFEIDLLVYFCSFRE 132 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----------~~~aiKFh~~~~~~~~~~~~~~~~ 132 (188)
++..||+||||+||.|.+ ..+|+|+|+ +-+++|+.
T Consensus 1 ~~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r-------~~~~~Fk~ 45 (197)
T cd05146 1 INGCISTGKESVVLHANGGSNETEQVIPTECAIKVFK-------TTLNEFKN 45 (197)
T ss_pred CCCccccCcceEEEEEecCcccccccCCceEEEEEEe-------ccceeEcC
Confidence 356799999999999933 389999998 55677764
No 5
>PF15013 CCSMST1: CCSMST1 family
Probab=92.21 E-value=0.094 Score=39.31 Aligned_cols=25 Identities=40% Similarity=0.740 Sum_probs=19.3
Q ss_pred hhhhhhccccCcCCcccccchHHHHHHHHH
Q 040944 122 DLLVYFCSFREDDDESVNENDAELVKQIEK 151 (188)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~e~~~~l~k~l~k 151 (188)
=+++|||-+|||+| .|..|.++|..
T Consensus 42 ~fliyFC~lReEnD-----iD~~L~~~L~e 66 (77)
T PF15013_consen 42 AFLIYFCFLREEND-----IDRWLDKNLYE 66 (77)
T ss_pred HHHHHHhhcccccc-----HHHHHHhhHHh
Confidence 47899999999865 56677777754
No 6
>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]
Probab=91.26 E-value=0.11 Score=49.27 Aligned_cols=37 Identities=41% Similarity=0.740 Sum_probs=31.7
Q ss_pred CCcccchhhhh---hhhhhhhhhhCCCCCcccccccccch
Q 040944 28 NHEIVPFRTRA---SHCFSQALEEHGFPVPSAVDCNRHCI 64 (188)
Q Consensus 28 nhE~VP~elI~---k~s~~~~~~~hgls~ee~vd~~r~~l 64 (188)
.-.|.-++-|+ .++||+||++||||+|+..|++|||+
T Consensus 146 ~~sWlyLSRlaa~kEfafmkaL~e~gfpVPkpiD~~RH~V 185 (465)
T KOG2268|consen 146 SGSWLYLSRLAATKEFAFMKALYERGFPVPKPIDHNRHCV 185 (465)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHcCCCCCCcccccceee
Confidence 34588888765 45699999999999999999999997
No 7
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=90.64 E-value=0.16 Score=33.52 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=41.3
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
|+..+|+||.+|...-.. .+....|++.. +++...+. +.+.+|.+ +||.+.
T Consensus 3 lt~~q~~vL~~l~~~~~~--~~t~~~la~~l--------~~~~~~vs----~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 3 LTPSQFRVLMALARHPGE--ELTQSELAERL--------GISKSTVS----RIVKRLEKKGLVERE 54 (62)
T ss_dssp STHHHHHHHHHHHHSTTS--GEEHHHHHHHH--------TS-HHHHH----HHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHHHHHCCCC--CcCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEEe
Confidence 678899999999887765 77888888886 88866666 78999998 799885
No 8
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=90.52 E-value=0.17 Score=38.87 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=44.9
Q ss_pred hcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
...|++.|.++|..+..+-| .|...|++.. |+|++.+. +++.+|.+ |+|++-
T Consensus 3 ~~~lD~~D~~IL~~L~~d~r----~~~~eia~~l--------glS~~~v~----~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 3 MMKLDDIDRRILRLLQEDAR----ISNAELAERV--------GLSPSTVL----RRIKRLEEEGVIKGY 55 (154)
T ss_pred cccccHHHHHHHHHHHHhCC----CCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCceeeE
Confidence 35689999999999999999 8999999997 99977766 79999999 788874
No 9
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=89.73 E-value=0.26 Score=40.04 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=50.6
Q ss_pred hcccCccchhHHHHHHhhccCCcccc-hhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccce
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVP-FRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGV 85 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP-~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY 85 (188)
|+.|++.+++||..|...++.+.+-| +..|++.. |++....+. +.|.+|++ ++|.+. .+.|.|.
T Consensus 1 ~~~lt~~q~~iL~~l~~~~~~~~~~~~~~ela~~~--------~~~s~~tv~---~~l~~L~~~g~i~~~---~~~~~~~ 66 (199)
T TIGR00498 1 MKPLTARQQEVLDLIRAHIESTGYPPSIREIARAV--------GLRSPSAAE---EHLKALERKGYIERD---PGKPRAI 66 (199)
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHh--------CCCChHHHH---HHHHHHHHCCCEecC---CCCCCeE
Confidence 35689999999999998888777756 56777775 887334443 78889999 688886 4666688
Q ss_pred ehh
Q 040944 86 SEE 88 (188)
Q Consensus 86 ~Lt 88 (188)
+++
T Consensus 67 ~~~ 69 (199)
T TIGR00498 67 RIL 69 (199)
T ss_pred EeC
Confidence 775
No 10
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=88.73 E-value=0.32 Score=39.47 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.6
Q ss_pred ccccCcCCcCceeeccC---CCeeEEeeeh
Q 040944 92 NSEAGRGSEPDRHNASD---KVGAIIFCEY 118 (188)
Q Consensus 92 G~~IGVGKESDVYea~~---~~~aiKFh~~ 118 (188)
...||.|++|+||.|.. .++|+|..+-
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~ 31 (190)
T cd05147 2 NGCISTGKEANVYHATTANGEERAIKIYKT 31 (190)
T ss_pred CCccccccceEEEEEECCCCCEEEEEEEEe
Confidence 46799999999999943 3899999874
No 11
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=82.46 E-value=0.77 Score=43.67 Aligned_cols=28 Identities=21% Similarity=0.068 Sum_probs=24.5
Q ss_pred hhcccccCcCCcCceeeccCC----CeeEEee
Q 040944 89 NQQNSEAGRGSEPDRHNASDK----VGAIIFC 116 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea~~~----~~aiKFh 116 (188)
-.+|.+||.|.++++++|..- ++||||-
T Consensus 30 yrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfE 61 (449)
T KOG1165|consen 30 YRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFE 61 (449)
T ss_pred ceeccccccCcceeeecccccccCceEEEEec
Confidence 579999999999999999333 9999995
No 12
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=80.27 E-value=1.4 Score=35.95 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=48.1
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
+++....-|.+|-.-.++..++.+..|++.. +.+.+++. ..+.+|.+ +||.+ .+|-|++||
T Consensus 4 ~s~~~edYL~~Iy~l~~~~~~~~~~diA~~L--------~Vsp~sVt----~ml~rL~~~GlV~~-----~~y~gi~LT 65 (154)
T COG1321 4 LSETEEDYLETIYELLEEKGFARTKDIAERL--------KVSPPSVT----EMLKRLERLGLVEY-----EPYGGVTLT 65 (154)
T ss_pred cchHHHHHHHHHHHHHhccCcccHHHHHHHh--------CCCcHHHH----HHHHHHHHCCCeEE-----ecCCCeEEC
Confidence 4444555566666555588899999999985 99988888 58889999 79998 679999999
No 13
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=78.82 E-value=1.7 Score=34.41 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=23.7
Q ss_pred hhcccccCcCCcCceeeccC---CCeeEEeee
Q 040944 89 NQQNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
.+++.+||.|.+|.||.|.. ..+|+|.+.
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~ 48 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHR 48 (198)
T ss_pred hhcCCccccCcceEEEEEEcCCCCEEEEEEEe
Confidence 46789999999999999933 389999754
No 14
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=78.31 E-value=0.76 Score=32.59 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=39.9
Q ss_pred hcccCccchhHHHHHHhhccCCcccch-hhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVPF-RTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP~-elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
|..|++.+-+||..|..-+..|-|-|. ..|.+.. |++....+. +-|..|++ ++|+|.
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~--------g~~S~~tv~---~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEENGYPPTVREIAEAL--------GLKSTSTVQ---RHLKALERKGYIRRD 59 (65)
T ss_dssp -----HHHHHHHHHHHHHHHHHSS---HHHHHHHH--------TSSSHHHHH---HHHHHHHHTTSEEEG
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh--------CCCChHHHH---HHHHHHHHCcCccCC
Confidence 467899999999999999999999987 4677765 887565554 67778888 799885
No 15
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=78.28 E-value=1.7 Score=33.46 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=22.2
Q ss_pred cccccCcCCcCceeecc---CCCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNAS---DKVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~---~~~~aiKFh~ 117 (188)
++..||.|.+|.||.|. +..+|+|.+.
T Consensus 1 ~~~~lg~G~~g~Vy~a~~~~~~~vavKv~~ 30 (187)
T cd05119 1 VGGPIGTGKEADVYLALDGDGEPVAVKIYR 30 (187)
T ss_pred CCcccccccceeEEEEECCCCCEEEEEEEe
Confidence 46789999999999993 3389999755
No 16
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=75.77 E-value=2 Score=31.31 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=38.0
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-ccccc
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHK 74 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R 74 (188)
|++.|.+||.++..+- -+|...|++.. |+|.+.+. +++.+|.+ ++|++
T Consensus 1 ld~~D~~il~~L~~~~----~~~~~~la~~l--------~~s~~tv~----~~l~~L~~~g~i~~ 49 (108)
T smart00344 1 LDEIDRKILEELQKDA----RISLAELAKKV--------GLSPSTVH----NRVKRLEEEGVIKG 49 (108)
T ss_pred CCHHHHHHHHHHHHhC----CCCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCeec
Confidence 4678999999998863 38888899886 99966665 78888888 67775
No 17
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=75.52 E-value=1.4 Score=29.36 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=32.6
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
|+..+|.||..|- ..++-.....|++.+ +++...+. +.|++|.. +||.+.
T Consensus 1 lt~~q~~vL~~l~---~~~~~~t~~~l~~~~--------~~~~~~vs----~~i~~L~~~glv~~~ 51 (68)
T PF13463_consen 1 LTRPQWQVLRALA---HSDGPMTQSDLAERL--------GISKSTVS----RIIKKLEEKGLVEKE 51 (68)
T ss_dssp --HHHHHHHHHHT-----TS-BEHHHHHHHT--------T--HHHHH----HHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHH---ccCCCcCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEec
Confidence 4677899999998 344555667788876 88866666 68888887 788764
No 18
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=73.96 E-value=2.6 Score=33.58 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=22.7
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeeeh
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCEY 118 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~~ 118 (188)
+..+||.|++|.||.|.. ..+|+|...-
T Consensus 1 ~~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~ 31 (190)
T cd05145 1 INGCISTGKEANVYHARTGDGEELAVKIYKT 31 (190)
T ss_pred CCceeecCCCcEEEEEEcCCCCEEEEEEEEc
Confidence 356899999999999943 3999998763
No 19
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=71.23 E-value=2 Score=43.97 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=23.6
Q ss_pred hhcccccCcCCcCceeec--cCC------CeeEEeee
Q 040944 89 NQQNSEAGRGSEPDRHNA--SDK------VGAIIFCE 117 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea--~~~------~~aiKFh~ 117 (188)
--++..||+|-++|||.| .++ .||||-||
T Consensus 391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK 427 (974)
T KOG4257|consen 391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCK 427 (974)
T ss_pred ccHHHhhcCCcccceeeeEecccccCcceeeeeehhc
Confidence 456788999999999999 222 68999887
No 20
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=69.60 E-value=2.9 Score=27.34 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=37.4
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
|+..+|.+|..|.. +.=+....|++.. +++...+. +.+++|.+ +||.|.
T Consensus 1 lt~~q~~iL~~l~~----~~~~~~~~la~~~--------~~~~~~~t----~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 1 LTPSQFRILRILYE----NGGITQSELAEKL--------GISRSTVT----RIIKRLEKKGLIERE 50 (59)
T ss_dssp STHHHHHHHHHHHH----HSSEEHHHHHHHH--------TS-HHHHH----HHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH----cCCCCHHHHHHHH--------CCChhHHH----HHHHHHHHCCCEEec
Confidence 46778999999874 3348888888886 88866666 68888888 698875
No 21
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=66.80 E-value=5.2 Score=32.80 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=43.9
Q ss_pred ccchhHHHHHHhhcc-CCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 13 KDDFKVLTAVETGMR-NHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 13 ~~DfRVL~AIE~GMR-nhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
+.++-+...+..... +.+.|+.+.|++.. ++|..-+. +.+..|.+ +||... .++.-||+|.
T Consensus 6 ~~~yAl~~l~~lA~~~~~~~vs~~eIA~~~--------~ip~~~l~----kIl~~L~~aGLv~s~---rG~~GGy~La 68 (164)
T PRK10857 6 KGRYAVTAMLDVALNSEAGPVPLADISERQ--------GISLSYLE----QLFSRLRKNGLVSSV---RGPGGGYLLG 68 (164)
T ss_pred HHHHHHHHHHHHHhCCCCCcCcHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEeC---CCCCCCeecc
Confidence 344444445555543 45799999999986 88855444 79999999 788864 5777899987
No 22
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=66.60 E-value=5.1 Score=30.19 Aligned_cols=57 Identities=11% Similarity=0.125 Sum_probs=39.6
Q ss_pred hhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 16 FKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 16 fRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
+++|..+-. ..+...++.+.|++.. ++|...+. +.+.+|.+ ++|.+. .+...||++.
T Consensus 11 l~~l~~la~-~~~~~~~s~~eia~~~--------~i~~~~v~----~il~~L~~~gli~~~---~g~~ggy~l~ 68 (132)
T TIGR00738 11 LRALLDLAL-NPDEGPVSVKEIAERQ--------GISRSYLE----KILRTLRRAGLVESV---RGPGGGYRLA 68 (132)
T ss_pred HHHHHHHHh-CCCCCcCcHHHHHHHH--------CcCHHHHH----HHHHHHHHCCcEEec---cCCCCCccCC
Confidence 344444432 1334599999999997 88855554 78888888 688764 3556799987
No 23
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=64.12 E-value=7.6 Score=25.09 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=36.3
Q ss_pred hHHHHHHhhccC-Ccccc-hhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 17 KVLTAVETGMRN-HEIVP-FRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 17 RVL~AIE~GMRn-hE~VP-~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
+++..|..+..+ ..-+| ...|++.. ++|.+.+. +.+.+|.+ ++|.+. +..||.++
T Consensus 9 ~i~~~i~~~~~~~~~~~~~~~~la~~~--------~is~~~v~----~~l~~L~~~G~i~~~-----~~~~~~l~ 66 (66)
T cd07377 9 QLREAILSGELKPGDRLPSERELAEEL--------GVSRTTVR----EALRELEAEGLVERR-----PGRGTFVA 66 (66)
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEEec-----CCCeEEeC
Confidence 466677777643 33445 88888886 88855555 68888888 688763 24577653
No 24
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=64.09 E-value=5.2 Score=29.82 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=39.2
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.|+..+|+||..|.. +..+....|++.. +++.+.+. +.+++|++ +||.|.
T Consensus 25 ~lt~~q~~iL~~l~~----~~~~t~~ela~~~--------~~~~~tvs----~~l~~Le~~GlI~r~ 75 (118)
T TIGR02337 25 GLTEQQWRILRILAE----QGSMEFTQLANQA--------CILRPSLT----GILARLERDGLVTRL 75 (118)
T ss_pred CCCHHHHHHHHHHHH----cCCcCHHHHHHHh--------CCCchhHH----HHHHHHHHCCCEEec
Confidence 478889999999864 3456777888875 88866666 79999999 799885
No 25
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=63.57 E-value=6 Score=30.73 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=48.4
Q ss_pred hhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehhhhcccc
Q 040944 16 FKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEENQQNSE 94 (188)
Q Consensus 16 fRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt~alG~~ 94 (188)
.|+|..+-. ....+.|+.+.|++.. ++|...+. +.+.+|.+ +||... .++.-||++.... ..
T Consensus 11 l~~l~~La~-~~~~~~~s~~~ia~~~--------~ip~~~l~----kil~~L~~~glv~s~---~G~~Ggy~l~~~~-~~ 73 (135)
T TIGR02010 11 VTAMLDLAL-NAETGPVTLADISERQ--------GISLSYLE----QLFAKLRKAGLVKSV---RGPGGGYQLGRPA-ED 73 (135)
T ss_pred HHHHHHHHh-CCCCCcCcHHHHHHHH--------CcCHHHHH----HHHHHHHHCCceEEE---eCCCCCEeccCCH-HH
Confidence 344444443 2445689999999987 88854444 79999999 788753 4666799988322 12
Q ss_pred cCcCCcCceeeccCCC
Q 040944 95 AGRGSEPDRHNASDKV 110 (188)
Q Consensus 95 IGVGKESDVYea~~~~ 110 (188)
|-+ .||+.+.+++
T Consensus 74 Itl---~dv~~a~eg~ 86 (135)
T TIGR02010 74 ISV---ADIIDAVDES 86 (135)
T ss_pred CcH---HHHHHHhCCC
Confidence 222 3677775554
No 26
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=63.44 E-value=4.9 Score=31.06 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=39.2
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.|+.-.|+||..|. .++-+....|++.. +++...+. +.+++|++ +||.|.
T Consensus 37 glt~~q~~vL~~l~----~~~~~t~~eLa~~l--------~i~~~tvs----r~l~~Le~~GlI~R~ 87 (144)
T PRK11512 37 DITAAQFKVLCSIR----CAACITPVELKKVL--------SVDLGALT----RMLDRLVCKGWVERL 87 (144)
T ss_pred CCCHHHHHHHHHHH----HcCCCCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEEec
Confidence 36778899999884 24557777888876 88866777 79999999 799986
No 27
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=63.31 E-value=5 Score=27.83 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=37.8
Q ss_pred HHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccc
Q 040944 18 VLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEG 84 (188)
Q Consensus 18 VL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeG 84 (188)
-|.+|-.-....+.|....|++.. +++.+.+. ..+.+|.+ +||.+ .+|.|
T Consensus 9 YL~~Iy~l~~~~~~v~~~~iA~~L--------~vs~~tvt----~ml~~L~~~GlV~~-----~~y~g 59 (60)
T PF01325_consen 9 YLKAIYELSEEGGPVRTKDIAERL--------GVSPPTVT----EMLKRLAEKGLVEY-----EPYKG 59 (60)
T ss_dssp HHHHHHHHHHCTSSBBHHHHHHHH--------TS-HHHHH----HHHHHHHHTTSEEE-----ETTTE
T ss_pred HHHHHHHHHcCCCCccHHHHHHHH--------CCChHHHH----HHHHHHHHCCCEEe-----cCCCC
Confidence 455655555578899999999996 99988888 48888888 79988 45655
No 28
>PF13730 HTH_36: Helix-turn-helix domain
Probab=61.26 E-value=7.4 Score=25.27 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=35.3
Q ss_pred ccCccchhHHHHHHhhc--cCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc
Q 040944 10 YLSKDDFKVLTAVETGM--RNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK 69 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GM--RnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k 69 (188)
.|++.++.|+..+-.-. ....|-..+.|++.+ |++...+. +.|+.|.+
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~--------g~s~~Tv~----~~i~~L~~ 51 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL--------GVSRRTVQ----RAIKELEE 51 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH--------CcCHHHHH----HHHHHHHH
Confidence 47888999999887776 333566789999997 99844444 67766666
No 29
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=61.14 E-value=2.2 Score=29.15 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=39.4
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.|++.+.+|+.++- .+.....+.|++.+ |+|...+. +.|.+|.+ +||++.
T Consensus 5 gLs~~E~~vy~~Ll----~~~~~t~~eIa~~l--------~i~~~~v~----~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 5 GLSENEAKVYLALL----KNGPATAEEIAEEL--------GISRSTVY----RALKSLEEKGLVERE 55 (68)
T ss_dssp CHHHHHHHHHHHHH----HHCHEEHHHHHHHH--------TSSHHHHH----HHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHHHH----HcCCCCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEEE
Confidence 36778888988874 55678888899997 99966666 68888888 799985
No 30
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=61.07 E-value=5 Score=25.62 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=31.5
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccc
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIH 73 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~ 73 (188)
|+..+++||..|.. +.-.....|++.+ |+|...+. +.+.+|.+ ++|+
T Consensus 1 l~~~~~~Il~~l~~----~~~~t~~ela~~~--------~is~~tv~----~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 1 LDETQRKILNYLRE----NPRITQKELAEKL--------GISRSTVN----RYLKKLEEKGLIE 48 (48)
T ss_dssp --HHHHHHHHHHHH----CTTS-HHHHHHHH--------TS-HHHHH----HHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHH----cCCCCHHHHHHHh--------CCCHHHHH----HHHHHHHHCcCcC
Confidence 46678899998877 3448888888887 99866666 57777766 5653
No 31
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=60.93 E-value=6.5 Score=30.58 Aligned_cols=54 Identities=9% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 18 VLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 18 VL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
.|.+|-.-...+..+.+..|++.. +++.+.+. +.|.+|.+ ++|.+. .+.||+||
T Consensus 9 yL~~I~~l~~~~~~~~~~ela~~l--------~vs~~svs----~~l~~L~~~Gli~~~-----~~~~i~LT 63 (142)
T PRK03902 9 YIEQIYLLIEEKGYARVSDIAEAL--------SVHPSSVT----KMVQKLDKDEYLIYE-----KYRGLVLT 63 (142)
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHh--------CCChhHHH----HHHHHHHHCCCEEEe-----cCceEEEC
Confidence 566666666677888888899886 88877777 68888888 788763 24678887
No 32
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=58.97 E-value=6.3 Score=36.48 Aligned_cols=24 Identities=29% Similarity=0.128 Sum_probs=20.1
Q ss_pred cccCcCCcCceeec----cCCCeeEEee
Q 040944 93 SEAGRGSEPDRHNA----SDKVGAIIFC 116 (188)
Q Consensus 93 ~~IGVGKESDVYea----~~~~~aiKFh 116 (188)
.+||-|+++|+|.| ++..||||.-
T Consensus 21 rkiGsGSFGdIy~~~~i~~ge~VAiK~E 48 (341)
T KOG1163|consen 21 RKIGSGSFGDIYLGISITSGEEVAIKLE 48 (341)
T ss_pred EeecCCchhheeeeeeccCCceEEEEee
Confidence 56899999999999 3349999974
No 33
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=58.44 E-value=9.3 Score=28.53 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=41.5
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.|+..+|+||..|-.-..+..-+....|.... +++...+. +.+++|++ ++|.|.
T Consensus 22 ~ls~~q~~vL~~l~~~~~~~~~~t~~eL~~~l--------~~~~stvs----~~i~~Le~kg~I~r~ 76 (109)
T TIGR01889 22 NLSLEELLILYYLGKLENNEGKLTLKEIIKEI--------LIKQSALV----KIIKKLSKKGYLSKE 76 (109)
T ss_pred CCCHHHHHHHHHHHhhhccCCcCcHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEecc
Confidence 57889999998887433344677788888876 88866666 79999999 698875
No 34
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=58.15 E-value=8.9 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=39.8
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCcc
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKE 83 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~Ye 83 (188)
|+..+|.+|..|...-.... ..|++.. +++...+. +.+++|++ +||.|. ..+-+
T Consensus 20 lt~~q~~~L~~l~~~~~~~~----~~la~~l--------~i~~~~vt----~~l~~Le~~glv~r~---~~~~D 74 (126)
T COG1846 20 LTPPQYQVLLALYEAGGITV----KELAERL--------GLDRSTVT----RLLKRLEDKGLIERL---RDPED 74 (126)
T ss_pred CCHHHHHHHHHHHHhCCCcH----HHHHHHH--------CCCHHHHH----HHHHHHHHCCCeeec---CCccc
Confidence 78899999999877655443 5566664 88866666 79999999 799986 44444
No 35
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=57.90 E-value=11 Score=28.99 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=37.8
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.|+..+|.||..|.... +-.....|++.. +++.+.+. +.+++|++ +||.|.
T Consensus 28 glt~~q~~vL~~l~~~~---~~~t~~eLa~~l--------~~~~~tvt----~~v~~Le~~GlV~r~ 79 (144)
T PRK03573 28 ELTQTHWVTLHNIHQLP---PEQSQIQLAKAI--------GIEQPSLV----RTLDQLEEKGLISRQ 79 (144)
T ss_pred CCCHHHHHHHHHHHHcC---CCCCHHHHHHHh--------CCChhhHH----HHHHHHHHCCCEeee
Confidence 47888999999997421 223356777775 88866666 79999999 799985
No 36
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=57.02 E-value=7.9 Score=39.01 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=42.9
Q ss_pred hhcccccCcCCcCceeec-cCCCeeEEeeehhhhhhhhhhccccCcCCcccccchHHHHH----HHHHHHHHHHHhhCCC
Q 040944 89 NQQNSEAGRGSEPDRHNA-SDKVGAIIFCEYFEIDLLVYFCSFREDDDESVNENDAELVK----QIEKQRRRAVAAVGDE 163 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea-~~~~~aiKFh~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~k----~l~kqr~~a~aaa~~~ 163 (188)
-.||.+||-|.++-||.| .-+.||||..+- ++-+++ -++.-| .|.|-|+--|+--.|-
T Consensus 394 v~l~~rIGsGsFGtV~Rg~whGdVAVK~Lnv---------------~~pt~~--qlqaFKnEVa~lkkTRH~NIlLFMG~ 456 (678)
T KOG0193|consen 394 VLLGERIGSGSFGTVYRGRWHGDVAVKLLNV---------------DDPTPE--QLQAFKNEVAVLKKTRHENILLFMGA 456 (678)
T ss_pred hhccceeccccccceeecccccceEEEEEec---------------CCCCHH--HHHHHHHHHHHHhhcchhhheeeehh
Confidence 678999999999999999 667999998752 211211 334333 4777787777666665
Q ss_pred CCcc
Q 040944 164 SLLP 167 (188)
Q Consensus 164 ~~~~ 167 (188)
..-|
T Consensus 457 ~~~p 460 (678)
T KOG0193|consen 457 CMNP 460 (678)
T ss_pred hcCC
Confidence 5444
No 37
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=56.97 E-value=4 Score=37.57 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=26.2
Q ss_pred ccceehh------hhcccccCcCCcCceeecc---C-CCeeEEeee
Q 040944 82 KEGVSEE------NQQNSEAGRGSEPDRHNAS---D-KVGAIIFCE 117 (188)
Q Consensus 82 YeGY~Lt------~alG~~IGVGKESDVYea~---~-~~~aiKFh~ 117 (188)
|+.+.++ -++-.++|.||.|+|++|- + .+.+||.-|
T Consensus 27 YE~~~i~wg~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLK 72 (338)
T KOG0668|consen 27 YESLVIDWGNQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILK 72 (338)
T ss_pred hhheeeeccccchHHHHHHHcCccHhhHhcccccCCCceEEEeeec
Confidence 5555544 4555789999999999993 2 277888765
No 38
>smart00090 RIO RIO-like kinase.
Probab=55.09 E-value=10 Score=32.06 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=23.1
Q ss_pred hcccccCcCCcCceeecc--C--C-CeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNAS--D--K-VGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~--~--~-~~aiKFh~ 117 (188)
.++.+||.|.+|.||.|. . + .+|+|...
T Consensus 31 ~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~ 63 (237)
T smart00090 31 AIGGCISTGKEANVYHALDFDGSGKERAVKIYR 63 (237)
T ss_pred HhCCeeccCcceeEEEEEecCCCCcEEEEEEEE
Confidence 567899999999999996 2 2 88999765
No 39
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=54.85 E-value=7.8 Score=27.65 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=38.8
Q ss_pred hhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 16 FKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 16 fRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
+++|..+-.. ....-+..+.|++.. ++|+..+. +.+.+|.+ ++|+.. .++.-||.|.
T Consensus 11 l~~l~~la~~-~~~~~~s~~eiA~~~--------~i~~~~l~----kil~~L~~~Gli~s~---~G~~GGy~L~ 68 (83)
T PF02082_consen 11 LRILLYLARH-PDGKPVSSKEIAERL--------GISPSYLR----KILQKLKKAGLIESS---RGRGGGYRLA 68 (83)
T ss_dssp HHHHHHHHCT-TTSC-BEHHHHHHHH--------TS-HHHHH----HHHHHHHHTTSEEEE---TSTTSEEEES
T ss_pred HHHHHHHHhC-CCCCCCCHHHHHHHH--------CcCHHHHH----HHHHHHhhCCeeEec---CCCCCceeec
Confidence 4555555332 222239999999987 88844444 79999999 698874 5778899987
No 40
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=54.82 E-value=11 Score=28.62 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=40.3
Q ss_pred chhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 15 DFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 15 DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
-.++|..+-. ...+.++...|++.. ++|.+-+. +++.+|.+ ++|... .++..||++.
T Consensus 11 al~~l~~la~--~~~~~~s~~eia~~l--------~is~~~v~----~~l~~L~~~Gli~~~---~g~~ggy~l~ 68 (130)
T TIGR02944 11 ATLVLTTLAQ--NDSQPYSAAEIAEQT--------GLNAPTVS----KILKQLSLAGIVTSK---RGVEGGYTLA 68 (130)
T ss_pred HHHHHHHHHh--CCCCCccHHHHHHHH--------CcCHHHHH----HHHHHHHHCCcEEec---CCCCCChhhc
Confidence 3455555533 445789999999986 88855544 78888888 788763 3556788875
No 41
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.95 E-value=9.5 Score=36.99 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=21.1
Q ss_pred cccCcCCcCceeeccCC----CeeEEeee
Q 040944 93 SEAGRGSEPDRHNASDK----VGAIIFCE 117 (188)
Q Consensus 93 ~~IGVGKESDVYea~~~----~~aiKFh~ 117 (188)
..||-|++++||.|.+. .+|+|.-.
T Consensus 19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~ 47 (467)
T KOG0201|consen 19 ELIGRGSFGEVYKAIDNKTKKVVAIKIID 47 (467)
T ss_pred hhccccccceeeeeeeccccceEEEEEec
Confidence 78999999999999665 78888743
No 42
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=53.00 E-value=9.8 Score=32.01 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=38.7
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.|+...|.||..|.. ++-+....|++.. +++.+.+. +.+++|++ +||.|.
T Consensus 42 gLt~~q~~iL~~L~~----~~~itq~eLa~~l--------~l~~sTvt----r~l~rLE~kGlI~R~ 92 (185)
T PRK13777 42 DLNINEHHILWIAYH----LKGASISEIAKFG--------VMHVSTAF----NFSKKLEERGYLTFS 92 (185)
T ss_pred CCCHHHHHHHHHHHh----CCCcCHHHHHHHH--------CCCHhhHH----HHHHHHHHCCCEEec
Confidence 477888999988853 4567788888875 67655666 79999999 799985
No 43
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=52.71 E-value=9.5 Score=30.14 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=38.7
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-ccccc
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHK 74 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R 74 (188)
.|++.|.+||.++..+-| .|...|++.. |+|++.+. +++.+|.. |.|++
T Consensus 6 ~lD~~D~~Il~~Lq~d~R----~s~~eiA~~l--------glS~~tV~----~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 6 QIDNLDRGILEALMENAR----TPYAELAKQF--------GVSPGTIH----VRVEKMKQAGIITG 55 (153)
T ss_pred ccCHHHHHHHHHHHHcCC----CCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCeee
Confidence 478899999999998844 5677888886 99955555 79989888 67774
No 44
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=51.80 E-value=13 Score=33.99 Aligned_cols=32 Identities=16% Similarity=-0.076 Sum_probs=25.7
Q ss_pred hhcccccCcCCcCceeec----cCCCeeEEeeehhh
Q 040944 89 NQQNSEAGRGSEPDRHNA----SDKVGAIIFCEYFE 120 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea----~~~~~aiKFh~~~~ 120 (188)
-.+|.++|-||++.||.| +..-+|+|.-.--+
T Consensus 24 feigr~LgkgkFG~vYlarekks~~IvalKVlfKsq 59 (281)
T KOG0580|consen 24 FEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQ 59 (281)
T ss_pred ccccccccCCccccEeEeeeccCCcEEEEeeeeHHH
Confidence 578999999999999999 22378888865544
No 45
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=51.75 E-value=12 Score=33.01 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=15.1
Q ss_pred cccccchHHHHHHHHHHHH
Q 040944 136 ESVNENDAELVKQIEKQRR 154 (188)
Q Consensus 136 ~~~~e~~~~l~k~l~kqr~ 154 (188)
+++++++++|+..|+|-|+
T Consensus 142 ~ddeDd~~~Ll~ELekIKk 160 (244)
T PF04889_consen 142 DDDEDDTAALLRELEKIKK 160 (244)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 4566778999999998765
No 46
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=49.72 E-value=13 Score=33.79 Aligned_cols=31 Identities=13% Similarity=-0.068 Sum_probs=23.7
Q ss_pred cccccCcCCcCceeeccC--C-CeeEEeeehhhh
Q 040944 91 QNSEAGRGSEPDRHNASD--K-VGAIIFCEYFEI 121 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~--~-~~aiKFh~~~~~ 121 (188)
++..|.-|||+.||.|-+ + .+|+|-.+-+-.
T Consensus 52 ~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~ 85 (268)
T COG1718 52 LVGCISTGKEANVYLAETGDGRYVAVKIYRTSTS 85 (268)
T ss_pred eEeeecCCcceEEEeeccCCCceEEEEEEehhhh
Confidence 344799999999999843 2 889988776543
No 47
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=49.69 E-value=9.4 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=27.3
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhh
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDD 67 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL 67 (188)
|+.-|.+||..+...-| .|...|++.. |+|++.+. +++.+|
T Consensus 1 lD~~D~~Il~~Lq~d~r----~s~~~la~~l--------glS~~~v~----~Ri~rL 41 (42)
T PF13404_consen 1 LDELDRKILRLLQEDGR----RSYAELAEEL--------GLSESTVR----RRIRRL 41 (42)
T ss_dssp --HHHHHHHHHHHH-TT----S-HHHHHHHH--------TS-HHHHH----HHHHHH
T ss_pred CCHHHHHHHHHHHHcCC----ccHHHHHHHH--------CcCHHHHH----HHHHHh
Confidence 56779999999998844 5788888887 99966655 566555
No 48
>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=49.64 E-value=9.4 Score=36.66 Aligned_cols=30 Identities=23% Similarity=0.042 Sum_probs=23.1
Q ss_pred hcccccCcCCcCceeec----cCCCeeEEeeehh
Q 040944 90 QQNSEAGRGSEPDRHNA----SDKVGAIIFCEYF 119 (188)
Q Consensus 90 alG~~IGVGKESDVYea----~~~~~aiKFh~~~ 119 (188)
.++.+||-|.++.||.| .+..+|||--.-.
T Consensus 13 ~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~ 46 (429)
T KOG0595|consen 13 ELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKK 46 (429)
T ss_pred eehhhccCcceEEEEEeEeccCCceEEeeeehhh
Confidence 45677999999999999 2238999875544
No 49
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=49.62 E-value=15 Score=27.17 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=42.3
Q ss_pred hcccCccchhHHHHHHh---hc-cCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 8 LRYLSKDDFKVLTAVET---GM-RNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~---GM-RnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
...++...+++|..|-. |. +.+..++...|++.+ |++.+.+. +.|++|++ ++|.+.
T Consensus 20 ~~~l~~r~~~vLl~L~~~~~G~~~~~~~is~~eLa~~~--------g~sr~tVs----r~L~~Le~~GlI~r~ 80 (95)
T TIGR01610 20 GADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELT--------GLSRTHVS----DAIKSLARRRIIFRQ 80 (95)
T ss_pred hCCCCHHHHHHHHHHHHHHhCccccCCccCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCeeee
Confidence 44567888888887742 33 367788888999987 99966666 78999999 688864
No 50
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=47.77 E-value=17 Score=29.26 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=38.4
Q ss_pred HHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 22 VETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 22 IE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
++..-...+.|+...|++.. ++|..-+. +.+..|-+ +||... .++.-||+|.
T Consensus 15 ~~LA~~~~~~~s~~eIA~~~--------~is~~~L~----kIl~~L~~aGlv~S~---rG~~GGy~La 67 (153)
T PRK11920 15 MYCAANDGKLSRIPEIARAY--------GVSELFLF----KILQPLVEAGLVETV---RGRNGGVRLG 67 (153)
T ss_pred HHHHhCCCCcCcHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEee---cCCCCCeeec
Confidence 34443445678999999885 88744444 79999999 799875 6778899988
No 51
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=47.37 E-value=10 Score=35.82 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=45.9
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
.|+..+++||.++.. ++-+....|++.. |++.+.++ +.+++|.+ +||.+. ...+..|.||
T Consensus 3 ~Lt~~e~~vL~~L~~----~~~~s~~eLA~~l--------~l~~~tVt----~~i~~Le~kGlV~~~---~~~~~~i~LT 63 (489)
T PRK04172 3 ELHPNEKKVLKALKE----LKEATLEELAEKL--------GLPPEAVM----RAAEWLEEKGLVKVE---ERVEEVYVLT 63 (489)
T ss_pred CCCHHHHHHHHHHHh----CCCCCHHHHHHHh--------CcCHHHHH----HHHHHHHhCCCEEEE---eeeEEEEEEC
Confidence 578899999999943 4467788888876 88877777 68989998 698875 3335677777
No 52
>PRK12423 LexA repressor; Provisional
Probab=45.54 E-value=16 Score=30.38 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=43.0
Q ss_pred hcccCccchhHHHHHHhhccCCcccchh-hhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVPFR-TRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP~e-lI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
|+.|++....+|..|...+..+.|-|.. .|++.. |+.....+. +.|.+|.+ ++|.+.
T Consensus 1 m~~lt~~q~~il~~l~~~i~~~g~~Ps~~eia~~~--------g~~s~~~v~---~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 1 MDTLTPKRAAILAFIRERIAQAGQPPSLAEIAQAF--------GFASRSVAR---KHVQALAEAGLIEVV 59 (202)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh--------CCCChHHHH---HHHHHHHHCCCEEec
Confidence 3558999999999999999999998654 566654 864355553 67778888 688875
No 53
>PRK10870 transcriptional repressor MprA; Provisional
Probab=45.52 E-value=19 Score=29.30 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=37.2
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
|+.-+|.||..|.. ....-+....|++.. +++...+. +.+++|++ +||.|.
T Consensus 53 Lt~~q~~iL~~L~~--~~~~~it~~eLa~~l--------~l~~~tvs----r~v~rLe~kGlV~R~ 104 (176)
T PRK10870 53 INETLFMALITLES--QENHSIQPSELSCAL--------GSSRTNAT----RIADELEKRGWIERR 104 (176)
T ss_pred CCHHHHHHHHHHhc--CCCCCcCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEEec
Confidence 67778999999862 222345555677775 88866666 79999999 799986
No 54
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=44.14 E-value=14 Score=34.80 Aligned_cols=65 Identities=31% Similarity=0.415 Sum_probs=45.0
Q ss_pred cccccCcCCcCceeec---cCC-CeeEEeeehh------------hhhhh--------h-hhc-cccCcCC-------cc
Q 040944 91 QNSEAGRGSEPDRHNA---SDK-VGAIIFCEYF------------EIDLL--------V-YFC-SFREDDD-------ES 137 (188)
Q Consensus 91 lG~~IGVGKESDVYea---~~~-~~aiKFh~~~------------~~~~~--------~-~~~-~~~~~~~-------~~ 137 (188)
+=..||-|.+|.||.+ +++ .+|.|=..|- ||++| | |+- +|.+++. =-
T Consensus 23 Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c 102 (375)
T KOG0591|consen 23 ILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELC 102 (375)
T ss_pred HHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhh
Confidence 3367999999999999 444 7787766664 44554 3 333 6755443 13
Q ss_pred cccchHHHHHHHHHHHHH
Q 040944 138 VNENDAELVKQIEKQRRR 155 (188)
Q Consensus 138 ~~e~~~~l~k~l~kqr~~ 155 (188)
+-+|=+.+.|.-.||+|+
T Consensus 103 ~~GDLsqmIk~~K~qkr~ 120 (375)
T KOG0591|consen 103 DAGDLSQMIKHFKKQKRL 120 (375)
T ss_pred cccCHHHHHHHHHhcccc
Confidence 456778899999999874
No 55
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=43.42 E-value=12 Score=31.08 Aligned_cols=18 Identities=22% Similarity=-0.027 Sum_probs=13.3
Q ss_pred ceeeccCC---CeeEEeeehh
Q 040944 102 DRHNASDK---VGAIIFCEYF 119 (188)
Q Consensus 102 DVYea~~~---~~aiKFh~~~ 119 (188)
|||.|.++ .+|+|||+..
T Consensus 1 ~Vy~~~~~~~~~~a~K~~r~~ 21 (188)
T PF01163_consen 1 DVYHAIDPDGEEVAVKIYRTG 21 (188)
T ss_dssp EEEEEEECTTEEEEEEEE-S-
T ss_pred CEEEEECCCCCEEEEEEeccC
Confidence 79999543 8999999964
No 56
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=42.62 E-value=21 Score=28.70 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=45.0
Q ss_pred ccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehhhhcccccCcCCcCceeeccCC
Q 040944 31 IVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEENQQNSEAGRGSEPDRHNASDK 109 (188)
Q Consensus 31 ~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt~alG~~IGVGKESDVYea~~~ 109 (188)
.|+++.|+... ++|..-+ ++.+..|-+ +||+.. .++.-||+|...- +.| +-.||+.+.++
T Consensus 25 ~~s~~~IA~~~--------~is~~~L----~kil~~L~kaGlV~S~---rG~~GGy~Lar~~-~~I---sl~dVv~ave~ 85 (150)
T COG1959 25 PVSSAEIAERQ--------GISPSYL----EKILSKLRKAGLVKSV---RGKGGGYRLARPP-EEI---TLGDVVRALEG 85 (150)
T ss_pred cccHHHHHHHh--------CcCHHHH----HHHHHHHHHcCCEEee---cCCCCCccCCCCh-HHC---cHHHHHHHhcC
Confidence 89999999985 8884333 379999999 799975 5788999988222 112 23588988776
Q ss_pred Cee
Q 040944 110 VGA 112 (188)
Q Consensus 110 ~~a 112 (188)
+.+
T Consensus 86 ~~~ 88 (150)
T COG1959 86 PLA 88 (150)
T ss_pred CCC
Confidence 533
No 57
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=42.26 E-value=16 Score=30.07 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=43.0
Q ss_pred hcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCcccee
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVS 86 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~ 86 (188)
...+++.+++||..+.. |.-+....|++.. +++.+.+. +.+++|.+ ++|.+.+ .....|+
T Consensus 138 ~~~ls~~~~~IL~~l~~----~g~~s~~eia~~l--------~is~stv~----r~L~~Le~~GlI~r~~---~r~~~~~ 198 (203)
T TIGR01884 138 LAGLSREELKVLEVLKA----EGEKSVKNIAKKL--------GKSLSTIS----RHLRELEKKGLVEQKG---RKGKRYS 198 (203)
T ss_pred hcCCCHHHHHHHHHHHH----cCCcCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEEEc---CCccEEE
Confidence 34678889999999864 2346677788876 88855555 78888888 7998852 1234466
Q ss_pred hh
Q 040944 87 EE 88 (188)
Q Consensus 87 Lt 88 (188)
+|
T Consensus 199 lT 200 (203)
T TIGR01884 199 LT 200 (203)
T ss_pred eC
Confidence 55
No 58
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=41.84 E-value=35 Score=23.40 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=35.1
Q ss_pred ccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 10 YLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 10 ~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.|+..+++||..|-..- .+....|++.. +++.+.+. +.|++|.+ ++|.+.
T Consensus 7 ~l~~~~~~il~~l~~~~----~~~~~~la~~~--------~~s~~~i~----~~l~~L~~~g~v~~~ 57 (101)
T smart00347 7 GLTPTQFLVLRILYEEG----PLSVSELAKRL--------GVSPSTVT----RVLDRLEKKGLIRRL 57 (101)
T ss_pred CCCHHHHHHHHHHHHcC----CcCHHHHHHHH--------CCCchhHH----HHHHHHHHCCCeEec
Confidence 46788999999987532 34555566654 88866666 68888888 687753
No 59
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=40.70 E-value=18 Score=29.32 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=40.1
Q ss_pred hcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.--|++.|..|+.++=. .+.+.-++.|++.. +.+ .+.+. ++|.+|.. |||.|.
T Consensus 22 ~~GLs~~Dv~v~~~LL~---~~~~~tvdelae~l--------nr~-rStv~---rsl~~L~~~GlV~Re 75 (126)
T COG3355 22 VYGLSELDVEVYKALLE---ENGPLTVDELAEIL--------NRS-RSTVY---RSLQNLLEAGLVERE 75 (126)
T ss_pred HhCCcHHHHHHHHHHHh---hcCCcCHHHHHHHH--------Ccc-HHHHH---HHHHHHHHcCCeeee
Confidence 34588899999988643 66788999999986 777 44443 67777777 899885
No 60
>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p
Probab=39.52 E-value=19 Score=29.77 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=21.7
Q ss_pred hcccccCcCCcCceeecc--C----CCeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNAS--D----KVGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~--~----~~~aiKFh~ 117 (188)
..|.+||-|.+|.||.|. + ..+|+|-.+
T Consensus 4 ~~~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~ 37 (317)
T cd07868 4 YEGCKVGRGTYGHVYKAKRKDGKDDRDYALKQIE 37 (317)
T ss_pred ccccccccCCCeEEEEEEEccCCCCceEEEEEEC
Confidence 457899999999999994 2 267888654
No 61
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=39.42 E-value=12 Score=29.99 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=38.7
Q ss_pred hcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-ccccc
Q 040944 8 LRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHK 74 (188)
Q Consensus 8 ~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R 74 (188)
.+.|++-|.+||.++...-|- +...|++.. |+|+..+. +++.+|.+ +.|++
T Consensus 9 ~~~lD~~D~~IL~~Lq~d~R~----s~~eiA~~l--------glS~~tv~----~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 9 GKDLDRIDRNILNELQKDGRI----SNVELSKRV--------GLSPTPCL----ERVRRLERQGFIQG 60 (164)
T ss_pred hhhHHHHHHHHHHHhccCCCC----CHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCeEE
Confidence 355888999999999776663 447777776 99955555 79999998 67764
No 62
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=39.33 E-value=16 Score=22.47 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=25.0
Q ss_pred cccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccc
Q 040944 9 RYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAV 57 (188)
Q Consensus 9 r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~v 57 (188)
..|++.+++++..+..|+ +...|++.. |+|...+.
T Consensus 2 ~~l~~~e~~i~~~~~~g~------s~~eia~~l--------~is~~tv~ 36 (58)
T smart00421 2 ASLTPREREVLRLLAEGL------TNKEIAERL--------GISEKTVK 36 (58)
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHH--------CCCHHHHH
Confidence 357888999887776665 667788775 88854444
No 63
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=38.34 E-value=22 Score=31.50 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=39.8
Q ss_pred cccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 9 RYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 9 r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
-.|.++|..||.+|...+- =|-...|.+.+ |+|...+. +.|.+|++ |+|++.
T Consensus 191 ~~L~~~e~~il~~i~~~GG---ri~Q~eL~r~l--------glsktTvs----R~L~~LEk~GlIe~~ 243 (258)
T COG2512 191 YDLNEDEKEILDLIRERGG---RITQAELRRAL--------GLSKTTVS----RILRRLEKRGLIEKE 243 (258)
T ss_pred CCCCHHHHHHHHHHHHhCC---EEeHHHHHHhh--------CCChHHHH----HHHHHHHhCCceEEE
Confidence 4578888889998655442 25577888887 99966666 89999999 798874
No 64
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=38.34 E-value=23 Score=28.19 Aligned_cols=27 Identities=11% Similarity=-0.091 Sum_probs=21.0
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
+...||-|.+|.||.|.. ..+|+|..+
T Consensus 10 ~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~ 39 (261)
T cd05068 10 LLRKLGAGQFGEVWEGLWNNTTPVAVKTLK 39 (261)
T ss_pred eEEEecccCCccEEEEEecCCeEEEEEeeC
Confidence 457899999999999843 378888765
No 65
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=37.91 E-value=18 Score=29.18 Aligned_cols=28 Identities=14% Similarity=-0.075 Sum_probs=20.9
Q ss_pred hcccccCcCCcCceeeccC-------CCeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNASD-------KVGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~-------~~~aiKFh~ 117 (188)
.++..||.|.+|+||.|.. ..+|+|..+
T Consensus 8 ~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~ 42 (266)
T cd05064 8 KIERILGTGRFGELCRGCLKLPSKRELPVAIHTLR 42 (266)
T ss_pred EEeeeecccCCCeEEEEEEecCCCceeeEEEEecC
Confidence 3567899999999999831 177888644
No 66
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=37.80 E-value=26 Score=27.85 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=21.1
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
+..+||.|..|.||.|.. ..+|+|..+
T Consensus 10 ~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~ 39 (261)
T cd05072 10 LVKKLGAGQFGEVWMGYYNNSTKVAVKTLK 39 (261)
T ss_pred EeeecCCcCCceEEEEEecCCceEEEEEcc
Confidence 447789999999999933 378888765
No 67
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=36.75 E-value=29 Score=27.52 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=21.1
Q ss_pred cccccCcCCcCceeeccC--CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD--KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~--~~~aiKFh~ 117 (188)
+...||-|..|.||.|.+ ..+|+|..+
T Consensus 10 ~~~~ig~g~~g~v~~~~~~~~~v~iK~~~ 38 (256)
T cd05039 10 LGATIGKGEFGDVMLGDYRGQKVAVKCLK 38 (256)
T ss_pred ceeeeecCCCceEEEEEecCcEEEEEEec
Confidence 457799999999999933 378888765
No 68
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=36.29 E-value=25 Score=28.03 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=21.9
Q ss_pred hcccccCcCCcCceeeccCC------CeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNASDK------VGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~~------~~aiKFh~ 117 (188)
++|..||-|..|.||.|... .+|+|..+
T Consensus 2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~ 35 (272)
T cd05075 2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMK 35 (272)
T ss_pred ccccccCcccCceEEEeEEccCCCeeeEEEEecc
Confidence 57899999999999998322 47888654
No 69
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=35.41 E-value=25 Score=27.86 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=19.1
Q ss_pred cccccCcCCcCceeeccCC---CeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASDK---VGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~---~~aiKFh 116 (188)
++..||.|..|.||.|... .+++|.-
T Consensus 10 i~~~ig~g~~~~v~~~~~~~~~~~~vK~~ 38 (261)
T cd05034 10 LERKLGAGQFGEVWMGTWNGTTKVAVKTL 38 (261)
T ss_pred eeeeeccCcceEEEEEEEcCCceEEEEEe
Confidence 4578999999999988332 5677643
No 70
>PRK14879 serine/threonine protein kinase; Provisional
Probab=35.35 E-value=28 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=18.7
Q ss_pred cccCcCCcCceeec--cCCCeeEEe
Q 040944 93 SEAGRGSEPDRHNA--SDKVGAIIF 115 (188)
Q Consensus 93 ~~IGVGKESDVYea--~~~~~aiKF 115 (188)
..||.|..|.||.| .+.++++|.
T Consensus 2 ~~l~~G~~~~vy~~~~~~~~~~vK~ 26 (211)
T PRK14879 2 KLIKRGAEAEIYLGDFLGIKAVIKW 26 (211)
T ss_pred cccccCceEEEEEEeeCCCceEEEE
Confidence 36899999999999 344888885
No 71
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=35.31 E-value=39 Score=23.47 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=30.0
Q ss_pred cccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 30 EIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 30 E~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
..+....|++.. |++...+. +.+..|.. ++|.+. ....+|++.
T Consensus 19 ~~~t~~~ia~~l--------~i~~~tv~----r~l~~L~~~g~l~~~----~~~~~y~l~ 62 (91)
T smart00346 19 GGLTLAELAERL--------GLSKSTAH----RLLNTLQELGYVEQD----GQNGRYRLG 62 (91)
T ss_pred CCcCHHHHHHHh--------CCCHHHHH----HHHHHHHHCCCeeec----CCCCceeec
Confidence 468888888886 88855555 78888877 788874 223457765
No 72
>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]
Probab=35.16 E-value=23 Score=36.17 Aligned_cols=25 Identities=32% Similarity=0.216 Sum_probs=19.4
Q ss_pred ccccCcCCcCceeeccCC----CeeEEee
Q 040944 92 NSEAGRGSEPDRHNASDK----VGAIIFC 116 (188)
Q Consensus 92 G~~IGVGKESDVYea~~~----~~aiKFh 116 (188)
-..||.|+++.||.|--+ .+|+||-
T Consensus 7 ~e~iG~Gsfg~VYKgrrK~t~~~vAik~i 35 (808)
T KOG0597|consen 7 YEMIGEGSFGRVYKGRRKYTIQVVAIKFI 35 (808)
T ss_pred HHHhcCCccceeeecccccceeEEEEEEe
Confidence 367999999999999332 7777774
No 73
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=34.19 E-value=29 Score=31.95 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=34.5
Q ss_pred hhcccccCcCCcCceeeccCC----CeeEEeeehhhhhhhhhhccccCcCCcccccchHHHHHHHHH
Q 040944 89 NQQNSEAGRGSEPDRHNASDK----VGAIIFCEYFEIDLLVYFCSFREDDDESVNENDAELVKQIEK 151 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea~~~----~~aiKFh~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~k~l~k 151 (188)
-.+|..+|-|++|.||.+..+ .+|+|+-+--.+- ...+.++..++-..+++|++
T Consensus 37 Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~---------~~~~~~~v~~Ev~il~~l~~ 94 (382)
T KOG0032|consen 37 YELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLR---------GKEDREDVRREVAILQQLSG 94 (382)
T ss_pred EEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhcc---------ccccHHHHHHHHHHHHhccC
Confidence 467799999999999999333 6888887532210 11133455566666666654
No 74
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=34.11 E-value=20 Score=28.13 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=25.3
Q ss_pred cccccCcCCcCceeeccCC----CeeEEeeehhhhh
Q 040944 91 QNSEAGRGSEPDRHNASDK----VGAIIFCEYFEID 122 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~----~~aiKFh~~~~~~ 122 (188)
++..||-|-+|.||.+.+. .+|+|.....+.+
T Consensus 3 ~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~ 38 (260)
T PF00069_consen 3 LVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIE 38 (260)
T ss_dssp EEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHH
T ss_pred EeEEEEeCCCEEEEEEEECCCCeEEEEEEecccccc
Confidence 5788999999999999333 6899988766543
No 75
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=33.92 E-value=37 Score=26.11 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=43.5
Q ss_pred HHhcccCccchhHHHHHHhh----ccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-ccccc
Q 040944 6 DVLRYLSKDDFKVLTAVETG----MRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHK 74 (188)
Q Consensus 6 e~~r~L~~~DfRVL~AIE~G----MRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R 74 (188)
-....|+...|+|+-||-+- -+..+||+..-++..+ |++...+. +.++.|.+ ++|.+
T Consensus 25 l~~~dls~rq~ki~~ai~RkTyG~nKk~d~Is~sq~~e~t--------g~~~~~V~----~al~~Li~~~vI~~ 86 (100)
T PF04492_consen 25 LLRADLSGRQLKILLAIIRKTYGWNKKMDRISNSQIAEMT--------GLSRDHVS----KALNELIRRGVIIR 86 (100)
T ss_pred HHhccccHHHHHHHHHHHHHccCCCCccceeeHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEe
Confidence 34468999999999998875 3778899999999998 88855555 46666666 56655
No 76
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=33.41 E-value=29 Score=22.61 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 28 NHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 28 nhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
.-.-+.+..|++.+ |++...+- +.+..|.. ++|+++
T Consensus 15 ~~~~~t~~eia~~~--------gl~~stv~----r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 15 SGGPLTLSEIARAL--------GLPKSTVH----RLLQTLVEEGYVERD 51 (52)
T ss_dssp TBSCEEHHHHHHHH--------TS-HHHHH----HHHHHHHHTTSEEEC
T ss_pred CCCCCCHHHHHHHH--------CcCHHHHH----HHHHHHHHCcCeecC
Confidence 33335888899987 99844444 67777777 688774
No 77
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=33.29 E-value=35 Score=27.44 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=20.4
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
+...||-|..|.||.|.+ ..+|+|..+
T Consensus 10 ~~~~lg~g~~~~v~~~~~~~~~~valK~~~ 39 (262)
T cd05071 10 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLK 39 (262)
T ss_pred EeeecCCCCCCcEEEEEecCCceEEEEecc
Confidence 446789999999999933 368888655
No 78
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=33.14 E-value=29 Score=30.36 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=21.6
Q ss_pred hcccccCcCCcCceeecc---------CCCeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNAS---------DKVGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~---------~~~~aiKFh~ 117 (188)
.+|..||.|.+|.||.|. ...+|+|..+
T Consensus 38 ~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~ 74 (375)
T cd05104 38 SFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLK 74 (375)
T ss_pred ehhheecCCccceEEEEEEeccccCccceeEEEEecc
Confidence 457899999999999883 1168888754
No 79
>PRK09954 putative kinase; Provisional
Probab=32.69 E-value=31 Score=30.36 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=36.0
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-ccccc
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHK 74 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R 74 (188)
|++.|.+||..+. ++.+++...|++.. ++|...+. ++|.+|.+ ++|+.
T Consensus 1 ~~~~~~~il~~l~----~~~~~s~~~la~~l--------~~s~~~v~----~~i~~L~~~g~i~~ 49 (362)
T PRK09954 1 MNNREKEILAILR----RNPLIQQNEIADIL--------QISRSRVA----AHIMDLMRKGRIKG 49 (362)
T ss_pred CChHHHHHHHHHH----HCCCCCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCcCC
Confidence 4677888998887 34589999999986 88855544 68888877 57654
No 80
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=32.42 E-value=34 Score=27.23 Aligned_cols=27 Identities=15% Similarity=-0.079 Sum_probs=20.6
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
+...||-|-+|.||.|.. ..+|+|...
T Consensus 10 ~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~ 39 (260)
T cd05067 10 LVKKLGAGQFGEVWMGYYNGHTKVAIKSLK 39 (260)
T ss_pred eeeeeccCccceEEeeecCCCceEEEEEec
Confidence 457799999999999944 378888543
No 81
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=32.25 E-value=50 Score=20.72 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=29.7
Q ss_pred HHHHHHhhc-cCCcccc-hhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-ccccc
Q 040944 18 VLTAVETGM-RNHEIVP-FRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHK 74 (188)
Q Consensus 18 VL~AIE~GM-RnhE~VP-~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R 74 (188)
+...+..+. ...+.+| ...|++.. ++|.+.+. +.+.+|.+ ++|.+
T Consensus 5 l~~~i~~~~~~~~~~l~s~~~la~~~--------~vs~~tv~----~~l~~L~~~g~i~~ 52 (60)
T smart00345 5 LREDIVSGELRPGDKLPSERELAAQL--------GVSRTTVR----EALSRLEAEGLVQR 52 (60)
T ss_pred HHHHHHcCCCCCCCcCcCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEEE
Confidence 344455553 4566674 77777775 88854444 78888888 68776
No 82
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=31.87 E-value=28 Score=28.76 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=20.2
Q ss_pred ccccCcCCcCceeeccC----CCeeEEeee
Q 040944 92 NSEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 92 G~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
...||-|..|.||.|.+ ..+|+|.-+
T Consensus 10 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~ 39 (303)
T cd07869 10 LEKLGEGSYATVYKGKSKVNGKLVALKVIR 39 (303)
T ss_pred eeeEEecCCEEEEEEEECCCCCEEEEEEec
Confidence 46789999999999933 278888754
No 83
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=31.68 E-value=37 Score=26.38 Aligned_cols=23 Identities=13% Similarity=-0.136 Sum_probs=18.5
Q ss_pred ccCcCCcCceeecc-CC-CeeEEee
Q 040944 94 EAGRGSEPDRHNAS-DK-VGAIIFC 116 (188)
Q Consensus 94 ~IGVGKESDVYea~-~~-~~aiKFh 116 (188)
.||.|..|.||.|. ++ ++++|..
T Consensus 1 ~ig~G~~~~vy~~~~~~~~~viK~~ 25 (199)
T TIGR03724 1 LIAKGAEAIIYLGDFLGLKAVIKER 25 (199)
T ss_pred CCCCCceEEEEEeecCCccEEEEEe
Confidence 38999999999993 33 8888873
No 84
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.29 E-value=37 Score=30.94 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=24.2
Q ss_pred hcccccCcCCcCceeec----cCCCeeEEeeeh
Q 040944 90 QQNSEAGRGSEPDRHNA----SDKVGAIIFCEY 118 (188)
Q Consensus 90 alG~~IGVGKESDVYea----~~~~~aiKFh~~ 118 (188)
.+|..||.|.+|-||.| .+..+|+|++..
T Consensus 20 ~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~ 52 (370)
T KOG0583|consen 20 ELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDR 52 (370)
T ss_pred eeeeeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence 57899999999999999 234999998765
No 85
>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as
Probab=30.63 E-value=31 Score=28.40 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=20.7
Q ss_pred hcccccCcCCcCceeecc--C----CCeeEEee
Q 040944 90 QQNSEAGRGSEPDRHNAS--D----KVGAIIFC 116 (188)
Q Consensus 90 alG~~IGVGKESDVYea~--~----~~~aiKFh 116 (188)
..|++||-|.+|.||.|. + ..+|+|-.
T Consensus 4 ~~g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~ 36 (317)
T cd07867 4 YEGCKVGRGTYGHVYKAKRKDGKDEKEYALKQI 36 (317)
T ss_pred eeceEeccCCCeeEEEEEecCCCccceEEEEEe
Confidence 357889999999999994 2 26777754
No 86
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=30.38 E-value=29 Score=28.68 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=20.1
Q ss_pred cccccCcCCcCceeeccC----CCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh 116 (188)
+...||.|..|.||.|.+ ..+|+|.-
T Consensus 11 ~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~ 40 (309)
T cd07845 11 KLNRIGEGTYGIVYRARDTTSGEIVALKKV 40 (309)
T ss_pred EeeeeeecCCEEEEEEEECCCCcEEEEEEE
Confidence 346789999999999943 27888854
No 87
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=30.32 E-value=47 Score=28.63 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhCCCCCccccccccccccCCCCCC
Q 040944 140 ENDAELVKQIEKQRRRAVAAVGDESLLPQEIPARLRVANPPTIP 183 (188)
Q Consensus 140 e~~~~l~k~l~kqr~~a~aaa~~~~~~~~~~~~~~~~~~~~~~~ 183 (188)
|.+.+..+...+.=.+|+.++.++.-+|..|-..+...+.|.+|
T Consensus 206 e~~~~~~~~~~~~~~~a~~~~~~~G~~Pg~l~r~l~~~~~p~vd 249 (292)
T PF13203_consen 206 EQEAEEAREWRQAIQRAAEAARSAGTLPGGLQRLLEELLKPKVD 249 (292)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcCCCCChHHHHHHHHHhccCCCC
Confidence 33444444555555667777888889999999888888888887
No 88
>KOG4076 consensus Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.23 E-value=79 Score=25.80 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHH------HHHHhhC-CCCCccccccc
Q 040944 143 AELVKQIEKQRR------RAVAAVG-DESLLPQEIPA 172 (188)
Q Consensus 143 ~~l~k~l~kqr~------~a~aaa~-~~~~~~~~~~~ 172 (188)
+-|.|.|.|+|+ =|||.|. +...+|--+|.
T Consensus 50 d~l~krlQkgrKyFDSGDYam~KAk~~~~~~~~~~~~ 86 (121)
T KOG4076|consen 50 DFLRKRLQKGRKYFDSGDYAMAKAKMKNKQLPTANPD 86 (121)
T ss_pred HHHHHHHHhcccccccchHHHHHhhcccccCCccccc
Confidence 467889999887 5899994 44444544443
No 89
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=29.62 E-value=52 Score=25.60 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=43.2
Q ss_pred ccchhHHHHHHhhc-cCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 13 KDDFKVLTAVETGM-RNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 13 ~~DfRVL~AIE~GM-RnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
+-||-+...|..+. ...+.++...|++.. |+|..- +++.+.+|.+ +||... .+..-||.+.
T Consensus 6 ~~~YAl~~~i~la~~~~g~~~s~~~ia~~~--------~is~~~----vrk~l~~L~~~Glv~s~---~G~~GG~~l~ 68 (141)
T PRK11014 6 FTDYGLRALIYMASLPEGRMTSISEVTEVY--------GVSRNH----MVKIINQLSRAGYVTAV---RGKNGGIRLG 68 (141)
T ss_pred HHhHHHHHHHHHhcCCCCCccCHHHHHHHH--------CcCHHH----HHHHHHHHHhCCEEEEe---cCCCCCeeec
Confidence 45666666677764 445678888888875 887333 3479999999 798875 4666789877
No 90
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=28.91 E-value=46 Score=26.97 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.1
Q ss_pred hcccccCcCCcCceeecc
Q 040944 90 QQNSEAGRGSEPDRHNAS 107 (188)
Q Consensus 90 alG~~IGVGKESDVYea~ 107 (188)
.++..||.|..|.||.|.
T Consensus 8 ~~~~~lg~G~~g~v~~~~ 25 (296)
T cd05051 8 NFVEKLGEGQFGEVHLCE 25 (296)
T ss_pred cccccccCCCCccEEEEE
Confidence 356889999999999874
No 91
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=28.77 E-value=30 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=20.7
Q ss_pred hcccccCcCCcCceeeccC----CCeeEEe
Q 040944 90 QQNSEAGRGSEPDRHNASD----KVGAIIF 115 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~----~~~aiKF 115 (188)
.++..||.|..|.||.|.+ ..+|+|-
T Consensus 3 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~ 32 (372)
T cd07853 3 EPDRPIGYGAFGVVWSVTDPRDGKRVALKK 32 (372)
T ss_pred cccceeeeCCCEEEEEEEECCCCCEEEEEe
Confidence 3567899999999999943 2788884
No 92
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=28.16 E-value=27 Score=29.33 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=20.6
Q ss_pred hcccccCcCCcCceeeccC---------CCeeEEee
Q 040944 90 QQNSEAGRGSEPDRHNASD---------KVGAIIFC 116 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~---------~~~aiKFh 116 (188)
.++..||-|.+|.||.|.. ..+|+|-.
T Consensus 10 ~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~ 45 (338)
T cd05102 10 RLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKML 45 (338)
T ss_pred eeeeEeccCCcceEEEEEEeccCCcccchhhheecc
Confidence 3567899999999999831 26888864
No 93
>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp
Probab=28.16 E-value=40 Score=28.81 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=20.8
Q ss_pred hcccccCcCCcCceeeccC---------CCeeEEee
Q 040944 90 QQNSEAGRGSEPDRHNASD---------KVGAIIFC 116 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~---------~~~aiKFh 116 (188)
.++..||.|.+|.||.|.+ ..+|+|.-
T Consensus 10 ~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~ 45 (343)
T cd05103 10 KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKML 45 (343)
T ss_pred cccccccCCccceEEEEeeccCCccccceeEEEEEe
Confidence 4568899999999999831 26888853
No 94
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=27.58 E-value=22 Score=35.55 Aligned_cols=29 Identities=24% Similarity=0.069 Sum_probs=24.0
Q ss_pred hhcccccCcCCcCceeec----cCCCeeEEeee
Q 040944 89 NQQNSEAGRGSEPDRHNA----SDKVGAIIFCE 117 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea----~~~~~aiKFh~ 117 (188)
=..|..||+|..|-||.| .++..|||.+.
T Consensus 75 F~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~ 107 (604)
T KOG0592|consen 75 FKFGKILGEGSYSTVVLAREKATGKEYAIKVLD 107 (604)
T ss_pred cchhheeccccceeEEEeeecCCCceeeHhhhh
Confidence 367899999999999999 34488888874
No 95
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=27.51 E-value=39 Score=27.96 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=21.6
Q ss_pred hcccccCcCCcCceeeccC-----------CCeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNASD-----------KVGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~-----------~~~aiKFh~ 117 (188)
.++.+||.|.+|.||.|.. ..+|+|..+
T Consensus 21 ~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~ 59 (307)
T cd05098 21 VLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLK 59 (307)
T ss_pred EEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEecc
Confidence 5778999999999998832 147787664
No 96
>PHA03211 serine/threonine kinase US3; Provisional
Probab=27.50 E-value=37 Score=31.62 Aligned_cols=34 Identities=24% Similarity=0.108 Sum_probs=24.5
Q ss_pred cccccCcCCcCceeeccCC----CeeEEeeeh----hhhhhh
Q 040944 91 QNSEAGRGSEPDRHNASDK----VGAIIFCEY----FEIDLL 124 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~----~~aiKFh~~----~~~~~~ 124 (188)
+...||-|.+|.||.|... .+|+|...+ +|+++|
T Consensus 173 i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL 214 (461)
T PHA03211 173 IHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLL 214 (461)
T ss_pred EEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHH
Confidence 3467899999999999543 689985432 455554
No 97
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=27.23 E-value=52 Score=26.13 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=20.2
Q ss_pred cccccCcCCcCceeecc----CCCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNAS----DKVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~----~~~~aiKFh 116 (188)
+...||-|..|.||.|. +..+|+|.-
T Consensus 6 i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~ 35 (267)
T cd08228 6 IEKKIGRGQFSEVYRATCLLDRKPVALKKV 35 (267)
T ss_pred eeeeeccCCCeeEEEEEEeCCCCEEEEEEe
Confidence 45779999999999993 238888843
No 98
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=27.20 E-value=71 Score=27.03 Aligned_cols=44 Identities=9% Similarity=0.216 Sum_probs=30.7
Q ss_pred hhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 16 FKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 16 fRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
++||..+- . +..+.+..|++.+ |++.+.+- +.+..|.. ++|.++
T Consensus 17 l~IL~~l~---~-~~~l~l~eia~~l--------gl~kstv~----Rll~tL~~~G~l~~~ 61 (257)
T PRK15090 17 FGILQALG---E-EREIGITELSQRV--------MMSKSTVY----RFLQTMKTLGYVAQE 61 (257)
T ss_pred HHHHHHhh---c-CCCCCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEEc
Confidence 34555553 3 3457899999998 99955555 78888777 788874
No 99
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=27.14 E-value=51 Score=26.17 Aligned_cols=26 Identities=23% Similarity=-0.046 Sum_probs=19.0
Q ss_pred ccccCcCCcCceeeccC---CCeeEEeee
Q 040944 92 NSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 92 G~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
...||.|.+|.||.|.. ..+|+|..+
T Consensus 9 ~~~lg~G~~~~vy~~~~~~~~~~a~K~~~ 37 (256)
T cd05114 9 MKELGSGQFGVVHLGKWRAQIKVAIKAIN 37 (256)
T ss_pred eeEecCCcCceEEEEEeccCceEEEEecc
Confidence 46789999999998832 267777643
No 100
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=27.12 E-value=40 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=24.4
Q ss_pred CccceehhhhcccccCcCCcCceeeccC----CCeeEEeeeh
Q 040944 81 KKEGVSEENQQNSEAGRGSEPDRHNASD----KVGAIIFCEY 118 (188)
Q Consensus 81 ~YeGY~Lt~alG~~IGVGKESDVYea~~----~~~aiKFh~~ 118 (188)
|+++|++. ..||.|..|.||.|.+ ..+|+|....
T Consensus 3 ~~~~~~i~----~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~ 40 (280)
T cd06611 3 PNDIWEII----GELGDGAFGKVYKAQHKETGLFAAAKIIQI 40 (280)
T ss_pred chhHHHHH----HHhcCCCCceEEEEEEcCCCcEEEEEEEee
Confidence 56777765 4468899999999932 3788887643
No 101
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=27.05 E-value=35 Score=28.03 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=19.9
Q ss_pred cccCcCCcCceeeccC----CCeeEEeee
Q 040944 93 SEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 93 ~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
..||-|..|.||.|.+ ..+|+|..+
T Consensus 6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~ 34 (285)
T cd05632 6 RVLGKGGFGEVCACQVRATGKMYACKRLE 34 (285)
T ss_pred EEEecCCCeEEEEEEECCCCcEEEEEEee
Confidence 5699999999999833 378888764
No 102
>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto
Probab=26.83 E-value=44 Score=28.72 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=20.2
Q ss_pred cccccCcCCcCceeeccC---------CCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASD---------KVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---------~~~aiKFh 116 (188)
++..||.|.+|.||.|.. ..+|+|..
T Consensus 11 i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~ 45 (337)
T cd05054 11 LGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKML 45 (337)
T ss_pred hhcccccCcCceEEeccccccccccccceeeeeec
Confidence 457899999999999832 25888863
No 103
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=26.44 E-value=95 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=21.1
Q ss_pred cccchHHHHHHHHHHHHHHHHhhCCCC
Q 040944 138 VNENDAELVKQIEKQRRRAVAAVGDES 164 (188)
Q Consensus 138 ~~e~~~~l~k~l~kqr~~a~aaa~~~~ 164 (188)
..-+-++|.++|.+.|++-.|...|+.
T Consensus 185 t~~~~~~l~~eL~~ir~~Gya~~~~E~ 211 (271)
T PRK10163 185 TLVDMPTLLKDLEQARELGYTVDKEEH 211 (271)
T ss_pred CCCCHHHHHHHHHHHHHhCCeeccccc
Confidence 334567899999999999888776653
No 104
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=26.18 E-value=29 Score=28.68 Aligned_cols=28 Identities=18% Similarity=0.123 Sum_probs=21.8
Q ss_pred cccccCcCCcCceeeccC----CCeeEEeeeh
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFCEY 118 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh~~ 118 (188)
+...||-|..|.||.|.+ ..+|+|....
T Consensus 5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~ 36 (291)
T cd05612 5 RIKTVGTGTFGRVHLVRDRISEHYYALKVMAI 36 (291)
T ss_pred eeeeeecCCCeEEEEEEEcCCCCEEEEEEEEH
Confidence 357799999999999933 3789997653
No 105
>PTZ00284 protein kinase; Provisional
Probab=25.98 E-value=37 Score=30.64 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=21.4
Q ss_pred cccccCcCCcCceeeccCC----CeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASDK----VGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~----~~aiKFh~ 117 (188)
+...||.|.+|.||.|.+. .+|+|..+
T Consensus 133 i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~ 163 (467)
T PTZ00284 133 ILSLLGEGTFGKVVEAWDRKRKEYCAVKIVR 163 (467)
T ss_pred EEEEEEeccCEEEEEEEEcCCCeEEEEEEEe
Confidence 4467999999999999432 68999763
No 106
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=25.94 E-value=49 Score=26.12 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=18.2
Q ss_pred ccCcCCcCceeeccC----CCeeEEee
Q 040944 94 EAGRGSEPDRHNASD----KVGAIIFC 116 (188)
Q Consensus 94 ~IGVGKESDVYea~~----~~~aiKFh 116 (188)
.||-|..|.||.|.+ ..+|+|..
T Consensus 2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~ 28 (252)
T cd05084 2 RIGRGNFGEVFSGRLRADNTPVAVKSC 28 (252)
T ss_pred ccCcccCccEEEEEEecCCceEEEEec
Confidence 689999999999833 26888854
No 107
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=25.77 E-value=44 Score=21.78 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=28.6
Q ss_pred cCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 27 RNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 27 RnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
..+..++...|++.. |++.+.+. +.+.+|.+ ++|.+.
T Consensus 21 ~~~~~~s~~ela~~~--------g~s~~tv~----r~l~~L~~~g~i~~~ 58 (67)
T cd00092 21 LVQLPLTRQEIADYL--------GLTRETVS----RTLKELEEEGLISRR 58 (67)
T ss_pred cccCCcCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEEec
Confidence 355678888999987 99866666 68888888 688874
No 108
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=25.44 E-value=49 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=20.5
Q ss_pred cccccCcCCcCceeeccCC----CeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASDK----VGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~----~~aiKFh~ 117 (188)
+...||.|.+|.||.|.+. .+|+|-.+
T Consensus 10 ~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~ 40 (309)
T cd07872 10 KLEKLGEGTYATVFKGRSKLTENLVALKEIR 40 (309)
T ss_pred EEEEecccCCEEEEEEEecCCCCeEEEEEee
Confidence 3467899999999998432 68888544
No 109
>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou
Probab=25.43 E-value=72 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=20.8
Q ss_pred cccccCcCCcCceeeccCC----CeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASDK----VGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~----~~aiKFh~ 117 (188)
+...||-|..|.||.|.+. .+|+|-.+
T Consensus 4 ~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~ 34 (288)
T cd07863 4 PVAEIGVGAYGTVYKARDPHSGHFVALKSVR 34 (288)
T ss_pred EeeEEeecCCeEEEEEEECCCCcEEEEEEec
Confidence 3467999999999999433 68888654
No 110
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=25.40 E-value=58 Score=26.08 Aligned_cols=27 Identities=19% Similarity=-0.096 Sum_probs=20.3
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
++..||.|.+|.||.|.. ..+|+|..+
T Consensus 8 ~~~~lg~G~~~~vy~~~~~~~~~~aik~~~ 37 (256)
T cd05113 8 FLKELGTGQFGVVKYGKWRGQYDVAIKMIK 37 (256)
T ss_pred EeeEecCcccceEEEEEecCCCcEEEEEcC
Confidence 446789999999999832 258888665
No 111
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=25.28 E-value=60 Score=31.38 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=22.7
Q ss_pred hcccccCcCCcCceeec----cCC----CeeEEeeeh
Q 040944 90 QQNSEAGRGSEPDRHNA----SDK----VGAIIFCEY 118 (188)
Q Consensus 90 alG~~IGVGKESDVYea----~~~----~~aiKFh~~ 118 (188)
.++..+|.|-+++||.| .+. +||+|=.+=
T Consensus 160 ~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~ 196 (474)
T KOG0194|consen 160 ELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKG 196 (474)
T ss_pred cccceeecccccEEEEEEEEecCCceeeeeEEEeecc
Confidence 56689999999999999 111 379998873
No 112
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=24.94 E-value=39 Score=21.81 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=27.5
Q ss_pred HHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhcc
Q 040944 18 VLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEKG 70 (188)
Q Consensus 18 VL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k~ 70 (188)
....+..-+.+.+.|+.+.|++.. ++|...+. +-|..|...
T Consensus 2 ~~~il~~L~~~~~~it~~eLa~~l--------~vS~rTi~----~~i~~L~~~ 42 (55)
T PF08279_consen 2 QKQILKLLLESKEPITAKELAEEL--------GVSRRTIR----RDIKELREW 42 (55)
T ss_dssp HHHHHHHHHHTTTSBEHHHHHHHC--------TS-HHHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHh--------CCCHHHHH----HHHHHHHHC
Confidence 344555666777789999999986 88843333 677777663
No 113
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=24.78 E-value=44 Score=30.07 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=21.1
Q ss_pred hcccccCcCCcCceeeccCC---------CeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNASDK---------VGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~~---------~~aiKFh~ 117 (188)
.+|..||.|.+|.||.|... .+|+|-.+
T Consensus 40 ~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~ 76 (400)
T cd05105 40 VLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLK 76 (400)
T ss_pred ehhheecCCCCceEEEEEEcccCCCCCceEEEEEecC
Confidence 46788999999999988321 47888553
No 114
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=24.72 E-value=85 Score=26.75 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=30.1
Q ss_pred hHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 17 KVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 17 RVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
+||..+ .....-+.+..|.+.+ |++.+.+- +.|..|.. ++|.++
T Consensus 15 ~iL~~l---~~~~~~ls~~eia~~l--------gl~kstv~----RlL~tL~~~g~v~~~ 59 (263)
T PRK09834 15 MVLRAL---NRLDGGATVGLLAELT--------GLHRTTVR----RLLETLQEEGYVRRS 59 (263)
T ss_pred HHHHHH---HhcCCCCCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEEe
Confidence 444444 3334457788888886 99855555 78888888 788875
No 115
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=24.54 E-value=46 Score=21.29 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=29.5
Q ss_pred HhcccCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhh
Q 040944 7 VLRYLSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDD 66 (188)
Q Consensus 7 ~~r~L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~r 66 (188)
++..|++++-.|+...- ++=-+.+.|++.. |+|...+....++.+.+
T Consensus 1 Al~~L~~~er~vi~~~y-----~~~~t~~eIa~~l--------g~s~~~V~~~~~~al~k 47 (50)
T PF04545_consen 1 ALDQLPPREREVIRLRY-----FEGLTLEEIAERL--------GISRSTVRRILKRALKK 47 (50)
T ss_dssp HHCTS-HHHHHHHHHHH-----TST-SHHHHHHHH--------TSCHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHh-----cCCCCHHHHHHHH--------CCcHHHHHHHHHHHHHH
Confidence 46778888888887765 4555677788875 99855554344444433
No 116
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=24.46 E-value=56 Score=27.73 Aligned_cols=29 Identities=21% Similarity=0.063 Sum_probs=22.4
Q ss_pred hcccccCcCCcCceeeccC----CCeeEEeeeh
Q 040944 90 QQNSEAGRGSEPDRHNASD----KVGAIIFCEY 118 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~----~~~aiKFh~~ 118 (188)
.+...||-|.+|.||.|.. ..+|+|..+.
T Consensus 21 ~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~ 53 (329)
T PTZ00263 21 EMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKK 53 (329)
T ss_pred EEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 4567899999999999932 3789997653
No 117
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=24.39 E-value=63 Score=20.39 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=31.7
Q ss_pred ccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 13 KDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 13 ~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
...+.||.++-.+ . +....|++.. +++...+. +.+++|.. ++|.+.
T Consensus 7 ~~~~~il~~l~~~----~-~~~~ei~~~~--------~i~~~~i~----~~l~~L~~~g~i~~~ 53 (78)
T cd00090 7 PTRLRILRLLLEG----P-LTVSELAERL--------GLSQSTVS----RHLKKLEEAGLVESR 53 (78)
T ss_pred hHHHHHHHHHHHC----C-cCHHHHHHHH--------CcCHhHHH----HHHHHHHHCCCeEEE
Confidence 4567788876654 3 7777788875 88755555 67888876 677753
No 118
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=24.34 E-value=69 Score=22.70 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=32.8
Q ss_pred CccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 12 SKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 12 ~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
++..|.+|..|=+.-.+= +-...+.+.+ |.+...+- ++++.|.+ +||.+.
T Consensus 1 t~~~~~~Le~I~rsR~~G--i~q~~L~~~~--------~~D~r~i~----~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 1 TDIQYCLLERIARSRYNG--ITQSDLSKLL--------GIDPRSIF----YRLKKLEKKGLIVKQ 51 (75)
T ss_pred CchHHHHHHHHHhcCCCC--EehhHHHHHh--------CCCchHHH----HHHHHHHHCCCEEEE
Confidence 356788888775544443 3444566665 76644444 88989998 798885
No 119
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=24.23 E-value=52 Score=27.63 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=21.6
Q ss_pred cccccCcCCcCceeecc----CCCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNAS----DKVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~----~~~~aiKFh~ 117 (188)
+...||.|..|.||.|. +..+|+|..+
T Consensus 5 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~ 35 (350)
T cd05573 5 VIKVIGRGAFGEVWLVRDKDTGQVYAMKVLR 35 (350)
T ss_pred EEEEEEeCCcEEEEEEEECCCCCEEEEEEEE
Confidence 45789999999999993 3378999764
No 120
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=24.12 E-value=60 Score=25.70 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=21.7
Q ss_pred hcccccCcCCcCceeeccC-------CCeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNASD-------KVGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~-------~~~aiKFh~ 117 (188)
.++..||-|..|.||.|.. ..+|+|.-+
T Consensus 2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~ 36 (273)
T cd05035 2 KLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMK 36 (273)
T ss_pred ccccccCcCCCceEEEEEEecCCCCcceEEEEEec
Confidence 3678899999999999831 258888654
No 121
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=23.88 E-value=61 Score=25.49 Aligned_cols=26 Identities=19% Similarity=-0.102 Sum_probs=20.4
Q ss_pred cccccCcCCcCceeeccC----CCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh 116 (188)
++..||.|..|.||.|.. ..+++|..
T Consensus 5 ~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~ 34 (267)
T cd06610 5 LIEVIGVGATAVVYAAICLPNNEKVAIKRI 34 (267)
T ss_pred eeeeecCCCCeEEEEEEEcCCCcEEEEEEe
Confidence 567899999999999932 27788864
No 122
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=23.85 E-value=53 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=20.6
Q ss_pred cccccCcCCcCceeeccC----CCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh 116 (188)
+|..||-|..|.||.|.+ ..+|+|..
T Consensus 4 ~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~ 33 (267)
T cd06628 4 KGALIGSGSFGSVYLGMNASSGELMAVKQV 33 (267)
T ss_pred ccceeecCCCeEEEEEEecCCCcEEEEEEe
Confidence 578899999999999943 26888854
No 123
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=23.80 E-value=55 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=21.2
Q ss_pred cccccCcCCcCceeecc----CCCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNAS----DKVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~----~~~~aiKFh~ 117 (188)
++..||.|..+.||.|. +..+|+|..+
T Consensus 5 ~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~ 35 (272)
T cd06629 5 KGELIGKGTYGRVYLALNVTTGEMMAVKQVE 35 (272)
T ss_pred ecceecccCceEEEEEeecCCCceeeeeeee
Confidence 56789999999999993 2378888543
No 124
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=23.68 E-value=64 Score=27.00 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=18.9
Q ss_pred cccCcCCcCceeeccCCCeeEEe
Q 040944 93 SEAGRGSEPDRHNASDKVGAIIF 115 (188)
Q Consensus 93 ~~IGVGKESDVYea~~~~~aiKF 115 (188)
++||.|..++||...+...++|+
T Consensus 7 ~~i~~G~t~~~y~~~~~~~VlR~ 29 (226)
T TIGR02172 7 TQTGEGGNGESYTHKTGKWMLKL 29 (226)
T ss_pred eeecCCCCcceeEecCCCEEEEe
Confidence 68999999999997555667776
No 125
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.41 E-value=1.1e+02 Score=22.89 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHH--HHHHHhhCCCCCcc
Q 040944 140 ENDAELVKQIEKQR--RRAVAAVGDESLLP 167 (188)
Q Consensus 140 e~~~~l~k~l~kqr--~~a~aaa~~~~~~~ 167 (188)
++=++|-++|.+++ |+|+.+|++++.-|
T Consensus 15 qeV~~Lq~~L~~E~~~r~aLe~al~~~~~~ 44 (88)
T PF14389_consen 15 QEVAELQKQLQEEQDLRRALEKALGRSSGS 44 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 34578899999887 68999999987655
No 126
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=23.22 E-value=48 Score=28.01 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=20.9
Q ss_pred cccccCcCCcCceeeccCC----CeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASDK----VGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~----~~aiKFh~ 117 (188)
+...||-|.+|.||.|.+. .+|+|-..
T Consensus 19 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 49 (343)
T cd07878 19 NLTPVGSGAYGSVCSAYDTRLRQKVAVKKLS 49 (343)
T ss_pred hheecccCCCeEEEEEEECCCCCEEEEEEeC
Confidence 4478999999999999432 78888653
No 127
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=23.18 E-value=55 Score=26.03 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=21.0
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
+|..||-|.+|.||.|.+ ..+|+|..+
T Consensus 4 ~~~~ig~g~~~~v~~~~~~~~~~~avk~~~ 33 (265)
T cd06631 4 KGEVLGKGAYGTVYCGLTNQGQLIAVKQVE 33 (265)
T ss_pred ccceEeccCCeEEEEEEEcCCCeEEEEEee
Confidence 567899999999999833 267888654
No 128
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=23.18 E-value=56 Score=26.91 Aligned_cols=17 Identities=18% Similarity=0.220 Sum_probs=14.3
Q ss_pred cccccCcCCcCceeecc
Q 040944 91 QNSEAGRGSEPDRHNAS 107 (188)
Q Consensus 91 lG~~IGVGKESDVYea~ 107 (188)
+..+||.|.+|.||.|.
T Consensus 9 ~~~~lg~G~fg~V~~~~ 25 (304)
T cd05096 9 FKEKLGEGQFGEVHLCE 25 (304)
T ss_pred eeeEecccCCeEEEEEE
Confidence 45679999999999883
No 129
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=22.87 E-value=56 Score=31.75 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=38.3
Q ss_pred ccceehh---hhcccccCcCCcCceeec-cCC--CeeEEeeehhhhhhhhhhccccCcCCcccccchHHHHHHHHHH
Q 040944 82 KEGVSEE---NQQNSEAGRGSEPDRHNA-SDK--VGAIIFCEYFEIDLLVYFCSFREDDDESVNENDAELVKQIEKQ 152 (188)
Q Consensus 82 YeGY~Lt---~alG~~IGVGKESDVYea-~~~--~~aiKFh~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~k~l~kq 152 (188)
++.|.+- -.+..+||-|-+++|+.| +.+ ++|+|--+=- ....++--.||.+||+|+-.
T Consensus 198 ~d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-------------~m~~~~f~~Ea~iMk~L~H~ 261 (468)
T KOG0197|consen 198 RDPWEIPREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-------------SMSPEAFLREAQIMKKLRHE 261 (468)
T ss_pred cCCeeecHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecc-------------ccChhHHHHHHHHHHhCccc
Confidence 4445444 455589999999999999 333 7888876521 12222333689999988643
No 130
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=22.86 E-value=64 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=18.1
Q ss_pred ccCcCCcCceeeccC---CCeeEEee
Q 040944 94 EAGRGSEPDRHNASD---KVGAIIFC 116 (188)
Q Consensus 94 ~IGVGKESDVYea~~---~~~aiKFh 116 (188)
.||.|..|.||.|.. ..+|+|..
T Consensus 2 ~ig~g~~g~vy~~~~~~~~~~a~K~~ 27 (250)
T cd05085 2 LLGKGNFGEVFKGTLKDKTPVAVKTC 27 (250)
T ss_pred ccCCCCCceEEEEEecCCcEEEEEec
Confidence 689999999999832 26888863
No 131
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=22.86 E-value=52 Score=25.20 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=35.9
Q ss_pred cCccchhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 11 LSKDDFKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 11 L~~~DfRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
+++.+++||.-+..-=-+|=| .|++.+ +++.+++. .++.+|+. |||+|.
T Consensus 5 ~~~l~~~IL~hl~~~~~Dy~k----~ia~~l--------~~~~~~v~----~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 5 LDPLDLKILQHLKKAGPDYAK----SIARRL--------KIPLEEVR----EALEKLEEMGLLERV 54 (92)
T ss_pred cChhHHHHHHHHHHHCCCcHH----HHHHHH--------CCCHHHHH----HHHHHHHHCCCeEEe
Confidence 567888888888776555543 366665 88877777 58888888 799985
No 132
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=22.82 E-value=70 Score=23.24 Aligned_cols=21 Identities=29% Similarity=0.801 Sum_probs=12.0
Q ss_pred ccccCcCCcccccchHHHHHHHHHH
Q 040944 128 CSFREDDDESVNENDAELVKQIEKQ 152 (188)
Q Consensus 128 ~~~~~~~~~~~~e~~~~l~k~l~kq 152 (188)
|-+.|.|||++. |...+..+|
T Consensus 1 cYYSESDnETA~----~FL~RvGr~ 21 (60)
T PF06072_consen 1 CYYSESDNETAT----EFLRRVGRQ 21 (60)
T ss_pred CCcCccccccHH----HHHHHHhHH
Confidence 556677776654 455554443
No 133
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=22.77 E-value=63 Score=27.63 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=21.1
Q ss_pred hcccccCcCCcCceeecc----CCCeeEEee
Q 040944 90 QQNSEAGRGSEPDRHNAS----DKVGAIIFC 116 (188)
Q Consensus 90 alG~~IGVGKESDVYea~----~~~~aiKFh 116 (188)
.+...||.|.+|.||.|. +..+|+|.-
T Consensus 77 ~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~ 107 (353)
T PLN00034 77 ERVNRIGSGAGGTVYKVIHRPTGRLYALKVI 107 (353)
T ss_pred hhhhhccCCCCeEEEEEEECCCCCEEEEEEE
Confidence 344789999999999993 237888874
No 134
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=22.66 E-value=77 Score=25.14 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=20.1
Q ss_pred cccCcCCcCceeeccC----CCeeEEeee
Q 040944 93 SEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 93 ~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
.+||.|..|.||.|.+ ..+|+|...
T Consensus 2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~ 30 (260)
T cd05611 2 KPISKGAFGSVYLAKKRSTGDYFAIKVLK 30 (260)
T ss_pred ccCCcCCCeeEEEEEecCCCCeEEEEEec
Confidence 4689999999999933 378999764
No 135
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=22.63 E-value=60 Score=27.59 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=21.5
Q ss_pred cccccCcCCcCceeecc----CCCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNAS----DKVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~----~~~~aiKFh~ 117 (188)
+...||-|..|.||.+. +..+|+|...
T Consensus 5 ~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~ 35 (331)
T cd05597 5 ILKVIGRGAFGEVAVVKMKNTGQVYAMKILN 35 (331)
T ss_pred EEEEEEecCCeEEEEEEECCCCCEEEEEEEE
Confidence 45779999999999983 3378999764
No 136
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=22.63 E-value=56 Score=29.50 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=22.7
Q ss_pred hhcccccCcCCcCceeeccC---------CCeeEEeee
Q 040944 89 NQQNSEAGRGSEPDRHNASD---------KVGAIIFCE 117 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea~~---------~~~aiKFh~ 117 (188)
-.++..||.|.+|.||.|-. ..+|+|-.+
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~ 76 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLK 76 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecC
Confidence 35678999999999999831 168888765
No 137
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=22.46 E-value=83 Score=19.14 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=30.1
Q ss_pred hhHHHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 16 FKVLTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 16 fRVL~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
..||..+.. +..+....|.+.. +++...+. +.|..|.+ ++|.+.
T Consensus 3 ~~il~~l~~----~~~~s~~~l~~~l--------~~s~~tv~----~~l~~L~~~g~i~~~ 47 (53)
T smart00420 3 QQILELLAQ----QGKVSVEELAELL--------GVSEMTIR----RDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHHH----cCCcCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEEEe
Confidence 346666653 3568888888885 88855555 68888877 677764
No 138
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=22.41 E-value=43 Score=27.82 Aligned_cols=25 Identities=28% Similarity=0.100 Sum_probs=20.1
Q ss_pred cccccCcCCcCceeeccC----CCeeEEe
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIF 115 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKF 115 (188)
++..||.|..|.||.|.+ ..+|+|-
T Consensus 4 i~~~lg~G~~g~V~~~~~~~~~~~vaiK~ 32 (338)
T cd07859 4 IQEVIGKGSYGVVCSAIDTHTGEKVAIKK 32 (338)
T ss_pred EEEEEeecCCeEEEEEEECCCCCEEEEEE
Confidence 567899999999999932 3788884
No 139
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=22.39 E-value=62 Score=26.53 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=20.3
Q ss_pred ccccCcCCcCceeecc----CCCeeEEeee
Q 040944 92 NSEAGRGSEPDRHNAS----DKVGAIIFCE 117 (188)
Q Consensus 92 G~~IGVGKESDVYea~----~~~~aiKFh~ 117 (188)
...||-|..|.||.|. +..+|+|...
T Consensus 5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~ 34 (285)
T cd05631 5 YRVLGKGGFGEVCACQVRATGKMYACKKLE 34 (285)
T ss_pred EEEEecCCCEEEEEEEEecCCceEEEEEee
Confidence 3679999999999983 3388998653
No 140
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=22.04 E-value=63 Score=25.74 Aligned_cols=26 Identities=23% Similarity=-0.066 Sum_probs=20.0
Q ss_pred cccccCcCCcCceeeccC---CCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh 116 (188)
++..||-|..|.||.|.. ...|+|..
T Consensus 8 ~~~~lg~G~~~~v~~~~~~~~~~~~iK~~ 36 (256)
T cd05059 8 FLKELGSGQFGVVHLGKWRGKIDVAIKMI 36 (256)
T ss_pred hhhhhccCCCceEEEeEecCCccEEEEEe
Confidence 567899999999999833 26788864
No 141
>smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.
Probab=21.89 E-value=71 Score=24.12 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=22.9
Q ss_pred hcccccCcCCcCceeecc----CCCeeEEeeeh
Q 040944 90 QQNSEAGRGSEPDRHNAS----DKVGAIIFCEY 118 (188)
Q Consensus 90 alG~~IGVGKESDVYea~----~~~~aiKFh~~ 118 (188)
.++..||.|.++.||.+. +..+++|....
T Consensus 2 ~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~ 34 (225)
T smart00221 2 ELGKKLGEGAFGKVYLARDKGTGELVAVKVLKK 34 (225)
T ss_pred ceeeEeecCCCeEEEEEEEcCCCcEEEEEeecc
Confidence 357889999999999992 34788888764
No 142
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=21.88 E-value=55 Score=27.44 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=21.1
Q ss_pred hcccccCcCCcCceeeccC----CCeeEEee
Q 040944 90 QQNSEAGRGSEPDRHNASD----KVGAIIFC 116 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~----~~~aiKFh 116 (188)
.++..||.|..|.||.|.+ ..+|+|.-
T Consensus 12 ~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~ 42 (335)
T PTZ00024 12 QKGAHLGEGTYGKVEKAYDTLTGKIVAIKKV 42 (335)
T ss_pred hhhhcccCCCceeEEEEEECCCCCeEEEEEe
Confidence 3567799999999999943 27888854
No 143
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=21.83 E-value=51 Score=28.68 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=21.0
Q ss_pred cccccCcCCcCceeeccC----CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
+...||-|.+|.||.|.+ ..+|+|...
T Consensus 5 ~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~ 35 (381)
T cd05626 5 KIKTLGIGAFGEVCLACKVDTHALYAMKTLR 35 (381)
T ss_pred EEEEEeecCCEEEEEEEECCCCCEEEEEEEE
Confidence 346799999999999932 278888753
No 144
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=21.75 E-value=68 Score=25.31 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=20.8
Q ss_pred cccccCcCCcCceeecc----CCCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNAS----DKVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~----~~~~aiKFh~ 117 (188)
++..||.|..|.||.|. +.++++|...
T Consensus 6 ~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~ 36 (263)
T cd06625 6 RGKLLGQGAFGRVYLCYDVDTGRELAVKQVP 36 (263)
T ss_pred ccceecCCCceEEEEEEEcCCCcEEEEEEEe
Confidence 57889999999999983 2378888643
No 145
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=21.29 E-value=77 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.004 Sum_probs=19.2
Q ss_pred ccCcCCcCceeeccC----CCeeEEeee
Q 040944 94 EAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 94 ~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
.||.|..|.||.|.. ..+|+|..+
T Consensus 2 ~lG~G~~g~Vy~~~~~~~~~~vaiK~~~ 29 (316)
T cd05592 2 VLGKGSFGKVMLAELKGTNEFFAIKALK 29 (316)
T ss_pred eeeeCCCeEEEEEEECCCCCEEEEEEEE
Confidence 589999999999932 268999765
No 146
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=21.24 E-value=38 Score=23.88 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=19.6
Q ss_pred ccccchhhhhc-cccccCCCccCCccceehh
Q 040944 59 CNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 59 ~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
.+|++|..|+. +|+++ ..|-|+.+|
T Consensus 34 avRrrLr~me~~Glt~~-----~g~~G~~iT 59 (66)
T PF08461_consen 34 AVRRRLRAMERDGLTRK-----VGRQGRIIT 59 (66)
T ss_pred HHHHHHHHHHHCCCccc-----cCCcccccC
Confidence 45799999999 68887 347788887
No 147
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=21.23 E-value=1.2e+02 Score=25.34 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHhhccCCcccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccC
Q 040944 19 LTAVETGMRNHEIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKD 75 (188)
Q Consensus 19 L~AIE~GMRnhE~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~ 75 (188)
|..+|.=.....-+.+..|++.+ |++.+.+- +.+..|.. ++|.++
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~l--------glpksT~~----RlL~tL~~~G~l~~~ 57 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEAT--------GLTRAAAR----RFLLTLVELGYVTSD 57 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHH--------CcCHHHHH----HHHHHHHHCCCEEeC
Confidence 33333334445567788899987 99954444 67777777 788875
No 148
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=21.06 E-value=75 Score=25.19 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=20.8
Q ss_pred hcccccCcCCcCceeecc--CCCeeEEeee
Q 040944 90 QQNSEAGRGSEPDRHNAS--DKVGAIIFCE 117 (188)
Q Consensus 90 alG~~IGVGKESDVYea~--~~~~aiKFh~ 117 (188)
.++..||-|.+|.||.+. +..+|+|-..
T Consensus 9 ~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~ 38 (254)
T cd05083 9 TLGEIIGEGEFGAVLQGEYTGQKVAVKNIK 38 (254)
T ss_pred eeeeeeccCCCCceEecccCCCceEEEeec
Confidence 356788999999999983 3377887643
No 149
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=20.88 E-value=80 Score=25.20 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=19.1
Q ss_pred cccccCcCCcCceeeccC---CCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh 116 (188)
+..+||.|..|.||.|.. ..+|+|..
T Consensus 10 ~~~~ig~g~~~~v~~~~~~~~~~~~lK~~ 38 (260)
T cd05069 10 LDVKLGQGCFGEVWMGTWNGTTKVAIKTL 38 (260)
T ss_pred eeeeecCcCCCeEEEEEEcCCceEEEEEc
Confidence 346789999999998832 26778753
No 150
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=20.83 E-value=64 Score=25.87 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=20.3
Q ss_pred cccccCcCCcCceeeccC----CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
+...||-|..|.||.|.+ ..+|+|-..
T Consensus 4 ~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~ 34 (285)
T cd07861 4 KIEKIGEGTYGVVYKGRNKKTGQIVAMKKIR 34 (285)
T ss_pred EeeEecccCceEEEEEEECCCCcEEEEEEec
Confidence 346789999999999932 278888543
No 151
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=20.78 E-value=58 Score=27.42 Aligned_cols=27 Identities=22% Similarity=0.039 Sum_probs=20.9
Q ss_pred cccccCcCCcCceeeccC----CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
+...||.|.+|.||.|.+ ..+|+|...
T Consensus 4 ~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~ 34 (323)
T cd05616 4 FLMVLGKGSFGKVMLAERKGTDELYAIKILK 34 (323)
T ss_pred EEEEEeeCCCeEEEEEEECCCCCEEEEEEEE
Confidence 457799999999999832 278888654
No 152
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=20.77 E-value=67 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=20.1
Q ss_pred hcccccCcCCcCceeeccC---CCeeEEee
Q 040944 90 QQNSEAGRGSEPDRHNASD---KVGAIIFC 116 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~---~~~aiKFh 116 (188)
.+..+||-|.+|.||.|.. ..+++|.-
T Consensus 9 ~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~ 38 (260)
T cd05073 9 KLEKKLGAGQFGEVWMATYNKHTKVAVKTM 38 (260)
T ss_pred eEEeEecCccceEEEEEEecCCccEEEEec
Confidence 3567899999999998833 26777744
No 153
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=20.74 E-value=54 Score=26.17 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=20.6
Q ss_pred cccccCcCCcCceeeccC----CCeeEEee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFC 116 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh 116 (188)
++..||.|.+|.||.|.+ ..+++|..
T Consensus 6 ~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~ 35 (265)
T cd06652 6 LGKLLGQGAFGRVYLCYDADTGRELAVKQV 35 (265)
T ss_pred EeeEEecCCceEEEEEEEcCCCcEEEEEEe
Confidence 567899999999999943 27888864
No 154
>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4
Probab=20.67 E-value=83 Score=24.75 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=22.1
Q ss_pred cccccCcCCcCceeecc----CCCeeEEeeeh
Q 040944 91 QNSEAGRGSEPDRHNAS----DKVGAIIFCEY 118 (188)
Q Consensus 91 lG~~IGVGKESDVYea~----~~~~aiKFh~~ 118 (188)
++..||.|.++.||.|. +..+++|..+.
T Consensus 4 ~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~ 35 (264)
T cd06626 4 RGNKIGGGTFGKVYTAVNLDTGELMAVKEIRI 35 (264)
T ss_pred eeeEeecCCCcEEEEEEECCCCcEEEEEEEEC
Confidence 46789999999999993 23788888664
No 155
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=20.61 E-value=1.3e+02 Score=24.83 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccccccccCCCCC
Q 040944 145 LVKQIEKQRRRAVAAVGDESLLPQEIPARLRVANPPTI 182 (188)
Q Consensus 145 l~k~l~kqr~~a~aaa~~~~~~~~~~~~~~~~~~~~~~ 182 (188)
|...++..|+=.|.-|-.-..||.|+|-.- --.||+|
T Consensus 48 L~~kl~ELk~lClrEAELTG~LP~E~PL~p-GEk~P~i 84 (138)
T PF11819_consen 48 LAQKLEELKKLCLREAELTGELPPEYPLEP-GEKPPKI 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccCCCC-CCCCCcc
Confidence 444556666667777877778999998321 1245554
No 156
>PTZ00036 glycogen synthase kinase; Provisional
Probab=20.61 E-value=56 Score=29.62 Aligned_cols=27 Identities=22% Similarity=-0.043 Sum_probs=21.1
Q ss_pred hcccccCcCCcCceeeccC----CCeeEEee
Q 040944 90 QQNSEAGRGSEPDRHNASD----KVGAIIFC 116 (188)
Q Consensus 90 alG~~IGVGKESDVYea~~----~~~aiKFh 116 (188)
.++..||.|.+|.||.|.. ..+|+|-.
T Consensus 69 ~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i 99 (440)
T PTZ00036 69 KLGNIIGNGSFGVVYEAICIDTSEKVAIKKV 99 (440)
T ss_pred EEeEEEEeCCCEEEEEEEECCCCCEEEEEEE
Confidence 3567899999999999932 37888854
No 157
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=20.54 E-value=72 Score=26.86 Aligned_cols=27 Identities=26% Similarity=0.064 Sum_probs=21.0
Q ss_pred cccccCcCCcCceeeccCC----CeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASDK----VGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~~----~~aiKFh~ 117 (188)
+...||-|..|.||.|.+. .+|+|..+
T Consensus 4 ~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~ 34 (324)
T cd05587 4 FLMVLGKGSFGKVMLAERKGTDELYAIKILK 34 (324)
T ss_pred EEEEEeeccCeEEEEEEECCCCCEEEEEEEE
Confidence 3467999999999999332 68999654
No 158
>PRK11050 manganese transport regulator MntR; Provisional
Probab=20.50 E-value=76 Score=25.29 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=29.0
Q ss_pred cccchhhhhhhhhhhhhhhCCCCCcccccccccchhhhhc-cccccCCCccCCccceehh
Q 040944 30 EIVPFRTRASHCFSQALEEHGFPVPSAVDCNRHCIDDDEK-GVIHKDPALNSKKEGVSEE 88 (188)
Q Consensus 30 E~VP~elI~k~s~~~~~~~hgls~ee~vd~~r~~l~rL~k-~LV~R~~~~~~~YeGY~Lt 88 (188)
+-+....|++.. +++.+.+. +.+.+|.+ ++|.++ ++.|+++|
T Consensus 50 ~~~t~~eLA~~l--------~is~stVs----r~l~~Le~~GlI~r~-----~~~~v~LT 92 (152)
T PRK11050 50 GEARQVDIAARL--------GVSQPTVA----KMLKRLARDGLVEMR-----PYRGVFLT 92 (152)
T ss_pred CCCCHHHHHHHH--------CCCHHHHH----HHHHHHHHCCCEEEe-----cCCceEEC
Confidence 456666777775 88866666 68888888 688774 24567766
No 159
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=20.30 E-value=59 Score=31.21 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=20.5
Q ss_pred hcccccCcCCcCceeecc--------CCCeeEEe
Q 040944 90 QQNSEAGRGSEPDRHNAS--------DKVGAIIF 115 (188)
Q Consensus 90 alG~~IGVGKESDVYea~--------~~~~aiKF 115 (188)
.++..||.|.+|.||.|. +..+|+|-
T Consensus 135 ~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~ 168 (566)
T PLN03225 135 VLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKK 168 (566)
T ss_pred EEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEE
Confidence 456889999999999993 23678884
No 160
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=20.28 E-value=81 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=21.5
Q ss_pred hhcccccCcCCcCceeeccCC---CeeEEeee
Q 040944 89 NQQNSEAGRGSEPDRHNASDK---VGAIIFCE 117 (188)
Q Consensus 89 ~alG~~IGVGKESDVYea~~~---~~aiKFh~ 117 (188)
..|...|-.|||+-||-|... ..|||..|
T Consensus 146 ~~inGCiSTGKEANVYHat~~dG~~~AIKIYK 177 (520)
T KOG2270|consen 146 VEINGCISTGKEANVYHATEEDGSEFAIKIYK 177 (520)
T ss_pred eecccccccCccceeEeeecCCCceEEEEEEe
Confidence 445556999999999999333 56887665
No 161
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=20.27 E-value=72 Score=25.38 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=19.7
Q ss_pred cccccCcCCcCceeeccC---CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD---KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~---~~~aiKFh~ 117 (188)
+..+||.|..|.||.|.. ..+|+|...
T Consensus 10 ~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~ 39 (260)
T cd05070 10 LIKKLGNGQFGEVWMGTWNGNTKVAVKTLK 39 (260)
T ss_pred hhheeccccCceEEEEEecCCceeEEEEec
Confidence 346789999999999843 267777554
No 162
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=20.22 E-value=77 Score=25.07 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=20.7
Q ss_pred cccccCcCCcCceeeccC----CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
.|..||-|..|.||.|.+ ..+|+|.-.
T Consensus 4 ~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~ 34 (268)
T cd06630 4 KGQQLGTGAFSSCYQARDVKTGTLMAVKQVT 34 (268)
T ss_pred ccceecCcCceEEEEEEEcCCCcEEEEEEee
Confidence 467899999999999832 277887554
No 163
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=20.19 E-value=56 Score=26.04 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.5
Q ss_pred cccccCcCCcCceeeccC----CCeeEEeee
Q 040944 91 QNSEAGRGSEPDRHNASD----KVGAIIFCE 117 (188)
Q Consensus 91 lG~~IGVGKESDVYea~~----~~~aiKFh~ 117 (188)
++..||-|.+|.||.|.+ ..+|+|.-+
T Consensus 13 ~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~ 43 (267)
T cd06646 13 LIQRVGSGTYGDVYKARNLHTGELAAVKIIK 43 (267)
T ss_pred hhheeecCCCeEEEEEEECCCCeEEEEEEEe
Confidence 457789999999999943 267888654
No 164
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=20.03 E-value=79 Score=29.30 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=31.9
Q ss_pred cCCcccchhhhhhhh---hhhhhhhCCCCCcccccccccchhhhhccccc
Q 040944 27 RNHEIVPFRTRASHC---FSQALEEHGFPVPSAVDCNRHCIDDDEKGVIH 73 (188)
Q Consensus 27 RnhE~VP~elI~k~s---~~~~~~~hgls~ee~vd~~r~~l~rL~k~LV~ 73 (188)
+.-.|+-+.-+...- +++.|+.+|+++|+..++|||++ .+.+|.
T Consensus 144 ~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP~P~~~nRHaV---vMe~ie 190 (304)
T COG0478 144 EHGSWLYVSRLAAEREFEALQRLYPEGVKVPKPIAWNRHAV---VMEYIE 190 (304)
T ss_pred cCcchhhhHHHHHHHHHHHHHHhhhcCCCCCCcccccccee---eeehcc
Confidence 334566666554332 68899999999999999999999 554443
Done!