Query 040945
Match_columns 125
No_of_seqs 110 out of 1072
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.7 2.4E-16 5.3E-21 121.5 13.9 114 11-125 11-125 (358)
2 PRK11272 putative DMT superfam 99.5 5E-13 1.1E-17 100.1 15.1 109 12-124 6-116 (292)
3 PRK15430 putative chlorampheni 99.5 3.3E-13 7.3E-18 101.3 12.6 111 12-125 7-120 (296)
4 TIGR00688 rarD rarD protein. T 99.5 3E-13 6.5E-18 99.4 12.0 110 13-125 2-117 (256)
5 PF00892 EamA: EamA-like trans 99.5 1.4E-13 3.1E-18 89.6 7.6 100 23-124 1-100 (126)
6 PRK10532 threonine and homoser 99.4 9.2E-12 2E-16 93.4 13.7 106 11-122 10-115 (293)
7 TIGR00950 2A78 Carboxylate/Ami 99.4 1.3E-11 2.9E-16 90.2 13.9 113 10-125 125-239 (260)
8 COG2510 Predicted membrane pro 99.4 3.8E-12 8.3E-17 84.4 8.7 110 14-125 4-114 (140)
9 PRK11689 aromatic amino acid e 99.4 1.2E-11 2.5E-16 92.9 11.6 106 12-125 3-112 (295)
10 PRK11453 O-acetylserine/cystei 99.3 4.7E-11 1E-15 89.7 12.4 101 15-125 6-107 (299)
11 TIGR00950 2A78 Carboxylate/Ami 99.3 2.9E-11 6.3E-16 88.4 10.5 94 25-125 1-94 (260)
12 PRK10532 threonine and homoser 99.3 1.1E-10 2.4E-15 87.5 13.7 111 11-125 146-256 (293)
13 PRK11272 putative DMT superfam 99.2 5.7E-10 1.2E-14 83.6 13.8 113 11-125 148-260 (292)
14 PRK11689 aromatic amino acid e 99.1 2.2E-09 4.7E-14 80.6 12.8 108 12-125 155-262 (295)
15 PRK11453 O-acetylserine/cystei 99.1 4.6E-09 1E-13 78.9 14.4 114 12-125 142-262 (299)
16 PLN00411 nodulin MtN21 family 99.1 8E-09 1.7E-13 79.9 14.2 111 12-125 188-303 (358)
17 TIGR00817 tpt Tpt phosphate/ph 99.0 1.3E-08 2.8E-13 76.4 11.8 94 30-125 19-112 (302)
18 TIGR03340 phn_DUF6 phosphonate 98.9 5.8E-08 1.3E-12 72.3 11.9 107 15-125 3-110 (281)
19 PTZ00343 triose or hexose phos 98.8 1.6E-07 3.5E-12 72.3 14.1 111 12-125 48-161 (350)
20 TIGR00817 tpt Tpt phosphate/ph 98.8 6.4E-08 1.4E-12 72.7 8.9 116 10-125 142-268 (302)
21 TIGR00688 rarD rarD protein. T 98.7 4.8E-07 1E-11 66.4 13.3 105 16-124 149-254 (256)
22 TIGR03340 phn_DUF6 phosphonate 98.7 5.9E-08 1.3E-12 72.3 6.8 113 11-125 142-258 (281)
23 COG0697 RhaT Permeases of the 98.7 1E-06 2.3E-11 64.5 13.3 110 12-123 6-115 (292)
24 COG0697 RhaT Permeases of the 98.6 3.9E-06 8.4E-11 61.5 13.7 109 11-124 152-261 (292)
25 PRK15430 putative chlorampheni 98.5 2.7E-06 5.9E-11 63.9 12.2 108 16-125 152-260 (296)
26 PTZ00343 triose or hexose phos 98.5 1E-05 2.2E-10 62.4 14.1 118 7-125 188-323 (350)
27 COG5006 rhtA Threonine/homoser 98.4 5E-06 1.1E-10 61.4 10.1 112 11-125 146-257 (292)
28 TIGR00776 RhaT RhaT L-rhamnose 98.3 1.5E-05 3.2E-10 60.0 11.0 104 12-125 151-259 (290)
29 PF13536 EmrE: Multidrug resis 98.3 2.5E-06 5.4E-11 55.5 5.8 78 47-125 2-81 (113)
30 COG2962 RarD Predicted permeas 98.2 3.2E-05 7E-10 58.0 10.7 112 11-125 5-119 (293)
31 COG5006 rhtA Threonine/homoser 98.2 3.2E-05 6.9E-10 57.2 9.8 103 14-122 13-115 (292)
32 TIGR00776 RhaT RhaT L-rhamnose 98.1 6.4E-05 1.4E-09 56.6 11.1 104 14-124 2-106 (290)
33 PF03151 TPT: Triose-phosphate 98.0 0.00054 1.2E-08 46.1 13.3 111 14-125 1-128 (153)
34 PF06027 DUF914: Eukaryotic pr 97.4 0.0079 1.7E-07 46.4 13.3 114 11-125 11-126 (334)
35 PF06027 DUF914: Eukaryotic pr 97.4 0.0041 8.9E-08 48.0 10.8 113 10-124 165-279 (334)
36 KOG4510 Permease of the drug/m 97.3 2.1E-05 4.6E-10 58.7 -2.5 98 23-125 47-144 (346)
37 COG2962 RarD Predicted permeas 96.2 0.3 6.5E-06 37.0 12.8 104 18-125 153-258 (293)
38 PRK02971 4-amino-4-deoxy-L-ara 96.0 0.21 4.6E-06 33.3 10.1 92 13-123 2-93 (129)
39 KOG1441 Glucose-6-phosphate/ph 95.9 0.051 1.1E-06 41.7 7.5 95 29-124 33-129 (316)
40 PF08449 UAA: UAA transporter 95.7 0.43 9.3E-06 35.9 11.8 93 29-125 16-111 (303)
41 PF08449 UAA: UAA transporter 95.6 0.57 1.2E-05 35.2 12.4 110 14-124 155-271 (303)
42 PRK15051 4-amino-4-deoxy-L-ara 95.5 0.1 2.2E-06 33.8 6.8 44 82-125 41-84 (111)
43 PF04657 DUF606: Protein of un 95.2 0.58 1.3E-05 31.5 11.1 94 16-112 4-98 (138)
44 KOG4510 Permease of the drug/m 95.0 0.013 2.8E-07 44.1 1.5 109 13-124 191-299 (346)
45 PF06800 Sugar_transport: Suga 94.8 1 2.2E-05 33.9 11.3 106 11-124 136-241 (269)
46 KOG2765 Predicted membrane pro 94.2 0.37 8E-06 37.9 7.8 101 12-112 246-352 (416)
47 PRK13499 rhamnose-proton sympo 91.8 2 4.4E-05 33.5 8.8 107 12-121 6-117 (345)
48 PF10639 UPF0546: Uncharacteri 91.7 0.5 1.1E-05 30.9 4.7 86 19-124 2-88 (113)
49 KOG1441 Glucose-6-phosphate/ph 91.7 4.8 0.0001 31.0 10.7 103 7-111 157-268 (316)
50 KOG1444 Nucleotide-sugar trans 88.6 9.5 0.00021 29.4 12.0 111 12-124 11-123 (314)
51 PRK13499 rhamnose-proton sympo 84.5 17 0.00038 28.3 11.8 111 11-122 172-308 (345)
52 PF04142 Nuc_sug_transp: Nucle 84.4 4.2 9E-05 30.0 6.0 52 73-125 13-64 (244)
53 COG4975 GlcU Putative glucose 81.9 1.1 2.4E-05 33.5 2.1 91 14-112 3-93 (288)
54 KOG2765 Predicted membrane pro 76.3 7.4 0.00016 30.9 5.1 44 81-125 163-206 (416)
55 PF06570 DUF1129: Protein of u 72.5 19 0.00041 25.7 6.2 24 14-37 112-135 (206)
56 KOG1443 Predicted integral mem 71.4 21 0.00045 27.7 6.4 99 25-125 29-131 (349)
57 TIGR00803 nst UDP-galactose tr 70.4 35 0.00077 24.2 8.4 36 89-124 163-198 (222)
58 PF07857 DUF1632: CEO family ( 61.4 33 0.00072 25.6 5.8 57 10-66 180-247 (254)
59 PF04142 Nuc_sug_transp: Nucle 60.8 64 0.0014 23.7 12.8 108 11-123 112-226 (244)
60 KOG1442 GDP-fucose transporter 60.0 57 0.0012 25.1 6.7 82 11-92 183-270 (347)
61 PF00893 Multi_Drug_Res: Small 60.0 27 0.00059 21.6 4.5 35 89-123 40-75 (93)
62 KOG2234 Predicted UDP-galactos 59.7 84 0.0018 24.7 12.8 111 13-124 15-138 (345)
63 COG3238 Uncharacterized protei 59.0 56 0.0012 22.5 10.3 108 12-120 4-112 (150)
64 PF06800 Sugar_transport: Suga 54.0 78 0.0017 23.9 6.7 50 74-124 42-92 (269)
65 KOG4314 Predicted carbohydrate 52.3 12 0.00025 27.5 2.0 37 89-125 64-100 (290)
66 PF12832 MFS_1_like: MFS_1 lik 51.5 50 0.0011 19.6 6.0 46 77-122 7-52 (77)
67 PF02687 FtsX: FtsX-like perme 48.7 61 0.0013 19.8 8.2 17 1-17 36-52 (121)
68 COG1968 BacA Undecaprenyl pyro 48.0 1.2E+02 0.0026 23.0 11.9 103 14-117 86-200 (270)
69 COG4760 Predicted membrane pro 41.0 1.4E+02 0.0031 21.9 7.9 91 3-102 49-139 (276)
70 PF07123 PsbW: Photosystem II 36.2 34 0.00074 23.2 2.2 28 8-35 101-128 (138)
71 KOG2766 Predicted membrane pro 32.5 42 0.0009 25.6 2.3 92 13-107 166-258 (336)
72 KOG3236 Predicted membrane pro 31.6 2.1E+02 0.0045 20.9 5.7 56 3-60 156-212 (225)
73 COG4858 Uncharacterized membra 31.1 1.6E+02 0.0034 21.3 4.9 22 11-32 123-144 (226)
74 KOG3912 Predicted integral mem 30.3 2.6E+02 0.0057 21.7 6.4 56 9-64 172-228 (372)
75 KOG1582 UDP-galactose transpor 28.6 2.8E+02 0.0061 21.5 6.4 112 12-124 189-306 (367)
76 PF11460 DUF3007: Protein of u 28.1 1.7E+02 0.0037 18.9 4.8 26 87-112 17-42 (104)
77 KOG1444 Nucleotide-sugar trans 27.9 2.9E+02 0.0063 21.4 7.9 101 7-108 151-258 (314)
78 PF04246 RseC_MucC: Positive r 27.0 56 0.0012 21.5 2.1 14 107-120 70-83 (135)
79 KOG3912 Predicted integral mem 26.8 2.2E+02 0.0047 22.2 5.3 97 23-123 13-131 (372)
80 PF08802 CytB6-F_Fe-S: Cytochr 26.7 1.1E+02 0.0024 16.1 2.9 27 71-97 5-31 (39)
81 PLN00082 photosystem II reacti 26.4 47 0.001 19.5 1.4 26 9-34 30-55 (67)
82 PF04306 DUF456: Protein of un 26.4 2.1E+02 0.0045 19.2 6.8 42 71-112 27-68 (140)
83 PRK10862 SoxR reducing system 24.5 68 0.0015 21.9 2.2 11 108-118 78-88 (154)
84 COG3086 RseC Positive regulato 24.4 79 0.0017 21.7 2.4 22 102-123 72-93 (150)
85 PF14126 DUF4293: Domain of un 24.1 2.4E+02 0.0051 19.1 8.8 11 112-122 119-129 (149)
86 PF04342 DUF486: Protein of un 24.1 2.1E+02 0.0046 18.6 6.8 55 19-77 32-93 (108)
87 KOG4831 Unnamed protein [Funct 23.7 54 0.0012 21.4 1.4 91 16-122 6-97 (125)
88 PF10958 DUF2759: Protein of u 23.6 1.5E+02 0.0032 16.6 3.5 30 5-34 15-44 (52)
89 KOG1580 UDP-galactose transpor 22.6 97 0.0021 23.4 2.8 110 14-125 173-288 (337)
90 PLN00077 photosystem II reacti 22.5 63 0.0014 21.4 1.6 27 9-35 91-117 (128)
91 PF01790 LGT: Prolipoprotein d 21.8 3.3E+02 0.0072 19.9 5.9 12 107-118 113-124 (256)
92 PF14328 DUF4385: Domain of un 20.1 37 0.0008 23.2 0.1 13 1-13 82-94 (145)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=121.47 Aligned_cols=114 Identities=44% Similarity=0.690 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNR-KNRPPLTFALLCKVFILSLIGIT 89 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~ 89 (125)
+.++++.++...++++...++.|.+++.+++|+.+.++|+.+|+++++++.+.+++ ++.++.+++++..+...|+++ .
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~ 89 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-S 89 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-H
Confidence 68899999999999999999999999999999999999999999999998876544 333445688999999999999 5
Q ss_pred HHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 90 LMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 90 ~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+++.+++.|+++++|++++++.++.|+++.++++++
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~ 125 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIF 125 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 788899999999999999999999999999999864
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.54 E-value=5e-13 Score=100.13 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=92.9
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945 12 LVP-YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL 90 (125)
Q Consensus 12 ~~~-~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 90 (125)
..+ .+..+...++||.+++..|.+.+ ++||.+++++|+.+++++++++...++++ ..+++++......|.++...
T Consensus 6 ~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~ 81 (292)
T PRK11272 6 LLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAV 81 (292)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHH
Confidence 444 45577888999999999999887 89999999999999999988887553322 22467888888999988778
Q ss_pred HHHHHHHhh-cccchHHHHHhhhhHHHHHHHHHHh
Q 040945 91 MQICVYTGV-SFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 91 ~~~~~~~gl-~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
++.+++.+. ++++++.++++.++.|+++.+++++
T Consensus 82 ~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~ 116 (292)
T PRK11272 82 GNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL 116 (292)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999 9999999999999999999999874
No 3
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.52 E-value=3.3e-13 Score=101.30 Aligned_cols=111 Identities=12% Similarity=-0.084 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR--P-PLTFALLCKVFILSLIGI 88 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~--~-~~~~~~~~~l~~~gl~~~ 88 (125)
.++++++++++++||.+++..|.. + ++||.++.++|+.++.+++.+....+++.+. + ..+++++.. ...+.++.
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 83 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAVLI 83 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHHHH
Confidence 578999999999999999999975 4 7999999999999999888777654332111 0 113444433 34666777
Q ss_pred HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
..++.++++|++++++++++++.++.|+++.++++++
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~ 120 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIF 120 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998864
No 4
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.51 E-value=3e-13 Score=99.35 Aligned_cols=110 Identities=11% Similarity=-0.023 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHH-HHHHHHHHHHH
Q 040945 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKN-----RPPLTFA-LLCKVFILSLI 86 (125)
Q Consensus 13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~-----~~~~~~~-~~~~l~~~gl~ 86 (125)
++++++++++++||.+.+++|. .+ ++||.++.++|+.++++++.++...+++++ .++.+++ ++..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4788999999999999999998 55 799999999999999988877664433211 1111222 24455666766
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
..+++.+++++++++++++++++.++.|++++++++++
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~ 117 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVF 117 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999864
No 5
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.49 E-value=1.4e-13 Score=89.64 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040945 23 CVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFS 102 (125)
Q Consensus 23 ~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~ 102 (125)
++||.+.+..|+..+ +.||....++|+..+++ +.+.....++++..+.+++++......|.++..+++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 479999999999997 79999999999999997 6665555544433456788899999999998889999999999999
Q ss_pred chHHHHHhhhhHHHHHHHHHHh
Q 040945 103 SPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 103 ~a~~a~il~~~~P~~~~lla~~ 124 (125)
++++++.+.++.|+++.+++++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~ 100 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWL 100 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999975
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.41 E-value=9.2e-12 Score=93.40 Aligned_cols=106 Identities=13% Similarity=0.034 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL 90 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 90 (125)
+..++.++++++++|+.+.+++|.+.+ +.||..+.++|+.+++++++++... ++. +.+++++...+..|+.. ..
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~-~~~---~~~~~~~~~~~~~g~~~-~~ 83 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP-WRL---RFAKEQRLPLLFYGVSL-GG 83 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH-Hhc---cCCHHHHHHHHHHHHHH-HH
Confidence 478899999999999999999999998 7999999999999999888876532 221 24567788888888875 57
Q ss_pred HHHHHHHhhcccchHHHHHhhhhHHHHHHHHH
Q 040945 91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLA 122 (125)
Q Consensus 91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla 122 (125)
.+.++++++++++++.++++.++.|+++.+++
T Consensus 84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999876
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.41 E-value=1.3e-11 Score=90.23 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 040945 10 VGLVPYAAMVAVQCVQVGITTLSKAAISQGAT--PLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG 87 (125)
Q Consensus 10 ~~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~--p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 87 (125)
.+..+..+.+.++++|+.+....|+..+ +.+ +.....+|+.++.+++.+.....++. ...+.+++..+++.|+++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence 4467999999999999999999999886 566 44566678999999988887654332 234678888899999999
Q ss_pred HHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 88 ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 88 ~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+.+++.++++++++.++++++.+.++.|++++++++++
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~ 239 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLI 239 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999763
No 8
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.38 E-value=3.8e-12 Score=84.39 Aligned_cols=110 Identities=10% Similarity=0.109 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRP-PLTFALLCKVFILSLIGITLMQ 92 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~~~~~~~ 92 (125)
...+.+++++.||+..+++|..++ ++||...++.|..+..++++.++...++.+.+ ..++|.|..+...|+.+ .+..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHH
Confidence 467899999999999999999997 99999999999999999999998877665432 35788899999999655 6999
Q ss_pred HHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 93 ICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 93 ~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
.+||.++|...++..+-+..+.|+++++++++|
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lf 114 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILF 114 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHH
Confidence 999999999999999999999999999999874
No 9
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.36 E-value=1.2e-11 Score=92.91 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 91 (125)
.++++.++.++++||.+++..|.+.+ ++||..+.++|+.++++++.++. ++++.++.+ + ..+..+.++...+
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~---~-~~~~~~~l~~~~~ 74 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFP---K-RYLLAGGLLFVSY 74 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---ccccccccc---H-HHHHHHhHHHHHH
Confidence 45678899999999999999999997 89999999999999998888753 111111112 2 2334455566678
Q ss_pred HHHHHHhhc----ccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 92 QICVYTGVS----FSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 92 ~~~~~~gl~----~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+.+++.+++ ..++++++++.++.|+++.++++++
T Consensus 75 ~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~ 112 (295)
T PRK11689 75 EICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLF 112 (295)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHH
Confidence 888888775 4678899999999999999999863
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.31 E-value=4.7e-11 Score=89.72 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040945 15 YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQIC 94 (125)
Q Consensus 15 ~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 94 (125)
.+..++++++||.+++..|.+.+ ++||..+.++|+.++++.+.+.. ++ + +.++ ..++..|+......+.+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~~-~---~~~~---~~~~~~g~~~~~~~~~~ 75 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--AR-P---KVPL---NLLLGYGLTISFGQFAF 75 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--cC-C---CCch---HHHHHHHHHHHHHHHHH
Confidence 35688899999999999999997 89999999999999877665543 11 1 1222 23445566665567778
Q ss_pred HHHhhcc-cchHHHHHhhhhHHHHHHHHHHhC
Q 040945 95 VYTGVSF-SSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 95 ~~~gl~~-~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
++.++++ .++++++++.++.|+++.++++++
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~ 107 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFT 107 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHH
Confidence 8899987 588999999999999999999863
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.30 E-value=2.9e-11 Score=88.41 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 040945 25 QVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSP 104 (125)
Q Consensus 25 wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a 104 (125)
||.+++..|..++++.||....++|+..+.+.+.+.... + .+++++......|.++..+++.+++.|++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998767899999999999998888776432 2 235567788889999888999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHhC
Q 040945 105 TLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 105 ~~a~il~~~~P~~~~lla~~~ 125 (125)
++++++.++.|++++++++++
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~ 94 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLM 94 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999864
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.30 E-value=1.1e-10 Score=87.54 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL 90 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 90 (125)
+..+.++.++++++|+.+.+..|+..+ +.+|.... +....+++.+.+....... ....++..+..++++|++++.+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999875 67887775 4455666666676654322 1234666677778999999999
Q ss_pred HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
++.+|++++++.++++++++.+++|+++.++++++
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~ 256 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIF 256 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999863
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.22 E-value=5.7e-10 Score=83.62 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL 90 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 90 (125)
+..+.++.++++++|+.+....|+..+ -++...+.+++.+++..+.+.............+.++|..+++.|++++.+
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998643 345667789998888888777654332211223667899999999999999
Q ss_pred HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
++.+|++++++.++++++.+.+++|++++++++++
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~ 260 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGL 260 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999763
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.12 E-value=2.2e-09 Score=80.63 Aligned_cols=108 Identities=12% Similarity=0.192 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 91 (125)
..+.+++++++++|+.+.+..|+..+ +.+|..... ..+.+.+.+.....+ ......+++.|..+++.|+ .+.++
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~ 228 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFG 228 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHH
Confidence 35889999999999999999999765 678876532 333344444333322 2122356778888888885 67899
Q ss_pred HHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 92 QICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 92 ~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
|.+|++++|+.++++++.+.+++|++++++++++
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~ 262 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALL 262 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999763
No 15
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.11 E-value=4.6e-09 Score=78.95 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQG--ATPLILAVYADAIASLILLPLSFFLNRK-----NRPPLTFALLCKVFILS 84 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~--~~p~~~~~~r~~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~l~~~g 84 (125)
..+.++.+.++++|+.+.+..|+..+++ .+......+....+.+.+.......+.+ .....+.++|..++++|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4689999999999999999999875422 2234445555555544444333222211 11235778899999999
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 85 LIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 85 l~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
++++.+++.+|++++++.++++++.+.+++|+++.++++++
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~ 262 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALL 262 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999863
No 16
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.07 E-value=8e-09 Score=79.90 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATP-LILAVYADAIASLILLPLSFFLNRKN----RPPLTFALLCKVFILSLI 86 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p-~~~~~~r~~~a~~~l~~~~~~~~~~~----~~~~~~~~~~~l~~~gl~ 86 (125)
..+.+.++.++++|+.+.+..|+..+ +++| ...+++...++++...+......+.+ ....+.. ...+++.|+.
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~ 265 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH
Confidence 34778899999999999999998877 5655 46777887777766655554433211 1123333 3346677766
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+.+++.+|++++++.||++++++.+++|++++++|+++
T Consensus 266 -t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~ 303 (358)
T PLN00411 266 -TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIF 303 (358)
T ss_pred -HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999864
No 17
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.97 E-value=1.3e-08 Score=76.43 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=77.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 040945 30 TLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASA 109 (125)
Q Consensus 30 ~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~i 109 (125)
+..|.++++-.+|..++++|+.++.+...+.. ..+..+.++.++++++.++..|++. ..++.+.+.++++++++.+++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~l 96 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSW-SSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHT 96 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHH
Confidence 57899998337899999999999877665542 1122223456789999999999997 688999999999999999999
Q ss_pred hhhhHHHHHHHHHHhC
Q 040945 110 TNNLIPAFTFLLAVIF 125 (125)
Q Consensus 110 l~~~~P~~~~lla~~~ 125 (125)
+.++.|+++.++++++
T Consensus 97 i~~~~Pv~~~ll~~~~ 112 (302)
T TIGR00817 97 IKAMEPFFSVVLSAFF 112 (302)
T ss_pred HHhcchHHHHHHHHHH
Confidence 9999999999999764
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.87 E-value=5.8e-08 Score=72.34 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945 15 YAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLN-RKNRPPLTFALLCKVFILSLIGITLMQI 93 (125)
Q Consensus 15 ~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 93 (125)
.+..+.++++|+...+..|+..+ +-++ ..+++...+++++.+....+. +..+++.+++.+ .....+..+...++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHAD-KEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFW-LLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC-chhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhH-HHHHHHHHHHHHHHH
Confidence 45678999999999999997665 3344 347777777778877765532 222232333334 445555556678999
Q ss_pred HHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 94 CVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 94 ~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+++.|+++.+++.++.+.++.|+++.++++++
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~ 110 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLT 110 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999863
No 19
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.85 E-value=1.6e-07 Score=72.35 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGAT-PLILAVYADAIASLILLPLSFFLNRKNRPPL--TFALLCKVFILSLIGI 88 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~l~~~gl~~~ 88 (125)
.+....++.=-.+=..+....|.+++ +.| |.+++.+|+.++.++....... +.++.++. .++++..++.+|+++.
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~-~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALN-MLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 33344444333444556778999998 799 9999999999997765444322 22222333 2458899999999997
Q ss_pred HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
.. +...+.++++++++.+.++.++.|++++++++++
T Consensus 126 ~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~ 161 (350)
T PTZ00343 126 FV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILF 161 (350)
T ss_pred HH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 65 5567899999999999999999999999999863
No 20
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.75 E-value=6.4e-08 Score=72.70 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------CCH-HHHH
Q 040945 10 VGLVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKNRPP---------LTF-ALLC 78 (125)
Q Consensus 10 ~~~~~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~---------~~~-~~~~ 78 (125)
.+..|.++.++++++|+.+.+..|+..++ +.||.....+....+++.+.|.....+..+... .+. ..+.
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 45679999999999999999999997642 589999999999999999999876533211000 010 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 79 KVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 79 ~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
..+..+.......+.+++.+++++||+.+++..++.|++++++|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~ 268 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF 268 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence 12233332333445677789999999999999999999999988753
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.75 E-value=4.8e-07 Score=66.41 Aligned_cols=105 Identities=8% Similarity=-0.014 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q 040945 16 AAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPP-LTFALLCKVFILSLIGITLMQIC 94 (125)
Q Consensus 16 l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~ 94 (125)
+..+.++++|+.+.+..|+..+ .++......... ...+..+............ .+.++|..++..|+. +.+++.+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l 224 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKN--TDLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHH
Confidence 3578899999999999998643 233222222211 1111111111111111111 123578999999987 6799999
Q ss_pred HHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 95 VYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 95 ~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
+++|+++.++++++.+.+++|+++.++|++
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~ 254 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSF 254 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975
No 22
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.68 E-value=5.9e-08 Score=72.30 Aligned_cols=113 Identities=15% Similarity=-0.035 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPL----ILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLI 86 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~----~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 86 (125)
+..+..+.+.++++|+.+.+..|+..+ +.+|. ....+.+...++.+.+.....++.. ...+.+.+....+.+.+
T Consensus 142 ~~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 142 RRKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGL 219 (281)
T ss_pred chhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHH
Confidence 345677899999999999999997643 44443 2333343333222222222112111 11123344566788888
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
.+.+++.+|++++++.++++++.+.+++|+++.++++++
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~ 258 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWF 258 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999763
No 23
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.68 E-value=1e-06 Score=64.49 Aligned_cols=110 Identities=26% Similarity=0.332 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 91 (125)
.......+...+.|+.+....|...+...++....+.|...+.....+.... ++.+..+ ..+++......+.+....+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLGLALP 83 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHHHHHH
Confidence 5567778888899999999999988733677777777999988874443322 1111111 1122446677788888899
Q ss_pred HHHHHHhhcccchHHHHHhhhhHHHHHHHHHH
Q 040945 92 QICVYTGVSFSSPTLASATNNLIPAFTFLLAV 123 (125)
Q Consensus 92 ~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~ 123 (125)
+.+++.++++++++.++.+.++.|+++.++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 84 FLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999995
No 24
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.57 E-value=3.9e-06 Score=61.47 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAV-YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGIT 89 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~-~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 89 (125)
...+.++.+.++++|+.+.+..|+.. ..++..... +.+..+.....+.. ..... ...+.+++..+...|++++.
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999865 467777666 55442222222221 12111 34567889999999999998
Q ss_pred HHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 90 LMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 90 ~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
+++.+++++++..+++..+.+.++.|+++.+++++
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l 261 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVL 261 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998775
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.53 E-value=2.7e-06 Score=63.88 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040945 16 AAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQIC 94 (125)
Q Consensus 16 l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 94 (125)
...+.++++|+.+.+..|+..++ ..++.....+....+.....+.... ...+....+...+..+...|+ .+.+++.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~ 229 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGI-VTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHH-HHHHHHHH
Confidence 35778899999999999986431 1233444455555554433222110 001111112233444555565 45689999
Q ss_pred HHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 95 VYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 95 ~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+++++++.+|++++.+.+++|+++.++++++
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~ 260 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTF 260 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999863
No 26
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.47 E-value=1e-05 Score=62.37 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=83.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------CCC
Q 040945 7 QLVVGLVPYAAMVAVQCVQVGITTLSKAAISQ------GATPLILAVYADAIASLILLPLSFFLNRKNR--------PPL 72 (125)
Q Consensus 7 ~~~~~~~~~l~~l~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~--------~~~ 72 (125)
+...+..|.+++++++++|+...+..|+..++ +.++.....+....++++++|+....+.... ...
T Consensus 188 ~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~ 267 (350)
T PTZ00343 188 ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANM 267 (350)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc
Confidence 34456779999999999999999999998762 2567777777788999999888763321100 000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----HhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 73 TFALLCKVFILSLIGITLMQICVY----TGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~----~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+...+..++.. ++.+.+.+.+++ .++++++|...++..++.|++++++|+++
T Consensus 268 ~~~~~~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~ 323 (350)
T PTZ00343 268 TNYTKGIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIII 323 (350)
T ss_pred cccchHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHH
Confidence 11111222232 333456666666 59999999999999999999999999863
No 27
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.39 E-value=5e-06 Score=61.40 Aligned_cols=112 Identities=16% Similarity=0.072 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL 90 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 90 (125)
+..|..+.+.++.+|+.|-+.+|++-+ .-|.-.-+..-+.+++++.+|+..-+..... .++.-+..-+..|++++.+
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l--~~p~ll~laLgvavlSSal 222 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPAL--FSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhh--cChHHHHHHHHHHHHhccc
Confidence 456888999999999999999999865 4566677788899999999999865433222 4666677888999999999
Q ss_pred HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+|.+.-.++++.++..-+++.+++|.+.++.++++
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~ 257 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF 257 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 28
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.29 E-value=1.5e-05 Score=59.98 Aligned_cols=104 Identities=10% Similarity=-0.005 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADA----IASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG 87 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 87 (125)
.++..+.+.+++.++.+....|.. +.||.+.++.+.. .+.+.+.+. ++. .+ .+.+.....+..|++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~--~~-~~~~~~~~~~~~Gi~- 220 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---ILA--KP-LKKYAILLNILPGLM- 220 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---hcc--cc-hHHHHHHHHHHHHHH-
Confidence 679999999999999999999964 4899998666655 444333332 111 11 223334445558988
Q ss_pred HHHHHHHHHHhhc-ccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 88 ITLMQICVYTGVS-FSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 88 ~~~~~~~~~~gl~-~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
..+++.+|+.+.+ +.+++.++++.+..|+.+.+.++++
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~ 259 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILI 259 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999 9999999999999999999998763
No 29
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.28 E-value=2.5e-06 Score=55.52 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 47 VYADAIASLILLPLSFFLNRKNR--PPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 47 ~~r~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
.+|+..+.+++..+...+++.+. +..+.+++...+..|+++...++.++++|+++.+ +..+.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 57999999988888877543211 1223455677778888887789999999999999 58889999999999999986
Q ss_pred C
Q 040945 125 F 125 (125)
Q Consensus 125 ~ 125 (125)
+
T Consensus 81 ~ 81 (113)
T PF13536_consen 81 F 81 (113)
T ss_pred H
Confidence 3
No 30
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.19 E-value=3.2e-05 Score=58.00 Aligned_cols=112 Identities=13% Similarity=-0.039 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCCHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNR---PPLTFALLCKVFILSLIG 87 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~ 87 (125)
..+|++..+.+.+.||..+...|.. + +.|+.++...|.+-+..++..+....++.+. ...++|.+..+...+++-
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4679999999999999999999964 4 7999999999999998888887766543221 123567777777777775
Q ss_pred HHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 88 ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 88 ~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
......|.++...-..-++|+=.++.|++.++++.+|
T Consensus 83 -~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lf 119 (293)
T COG2962 83 -GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLF 119 (293)
T ss_pred -HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999998764
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.15 E-value=3.2e-05 Score=57.23 Aligned_cols=103 Identities=19% Similarity=0.090 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 93 (125)
++..++.+++.-=...-+.|...+ .++|...+.+|..++++++..+.+.. +.+.+++++..+...|..-. .-|.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~RPw----r~r~~~~~~~~~~~yGvsLg-~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFP-LVGAAGVTALRLAIAALILLALFRPW----RRRLSKPQRLALLAYGVSLG-GMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHhhHH----HhccChhhhHHHHHHHHHHH-HHHH
Confidence 688888888777777788999988 89999999999999999988876432 24567888999988888754 6789
Q ss_pred HHHHhhcccchHHHHHhhhhHHHHHHHHH
Q 040945 94 CVYTGVSFSSPTLASATNNLIPAFTFLLA 122 (125)
Q Consensus 94 ~~~~gl~~~~a~~a~il~~~~P~~~~lla 122 (125)
++|.++++++-+.+.-+.++-|+....++
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 99999999999999999999999887764
No 32
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.11 E-value=6.4e-05 Score=56.56 Aligned_cols=104 Identities=10% Similarity=0.007 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 93 (125)
++++.++++++||...+..|+.. +.++.+.. |..++.+++.......++++ ..+++.+..-+..|++ -..++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence 46788999999999999999853 67887775 77777776666554433222 1123333333333333 457889
Q ss_pred HHHHhhcccchHHHHHhhh-hHHHHHHHHHHh
Q 040945 94 CVYTGVSFSSPTLASATNN-LIPAFTFLLAVI 124 (125)
Q Consensus 94 ~~~~gl~~~~a~~a~il~~-~~P~~~~lla~~ 124 (125)
+++.+.++++.+.+-.+.+ +.|++..+.+.+
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~ 106 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVI 106 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888 888888777754
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.01 E-value=0.00054 Score=46.10 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----C-------CHHH
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQ------GATPLILAVYADAIASLILLPLSFFLNRKNRPP----L-------TFAL 76 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~------~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~----~-------~~~~ 76 (125)
|..+.+.+.++-++..+..|+.+++ +.+|.++..+....+.+++.+.....++.+..+ . +.+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 4567889999999999999998875 689999999999999999999887765433110 0 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 77 LCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+..++..|+++ ...+...+.-+++++|...++..+.-.+.+.++++++
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~ 128 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIF 128 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhh
Confidence 66666777776 4889999999999999999999999999998888764
No 34
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.44 E-value=0.0079 Score=46.41 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGAT-PLILAVYADAIASLILLPLSFFLNRK-NRPPLTFALLCKVFILSLIGI 88 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~-p~~~~~~r~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~ 88 (125)
.++..+.-=..+++=..+...+....+++.+ |..-+++-+..-.++..+...++++. ++.+.-+++|.+.+.+|++-.
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv 90 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV 90 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence 3444444334444445555555544443444 66666777766565666655554322 222222345666677888885
Q ss_pred HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
.++.+.+.|+++++.+.+.++....-.+++++++++
T Consensus 91 -~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~f 126 (334)
T PF06027_consen 91 -EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIF 126 (334)
T ss_pred -HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHH
Confidence 899999999999999999999999999999999864
No 35
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.36 E-value=0.0041 Score=47.96 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHH
Q 040945 10 VGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRP--PLTFALLCKVFILSLIG 87 (125)
Q Consensus 10 ~~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~gl~~ 87 (125)
+...|.+.++.+++++|.+.+.-|...+ +.|+.+...+=-+.+.++..+.....++.... +++++.+..++ ...++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v-~~~~~ 242 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLV-GYALC 242 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHH-HHHHH
Confidence 4578999999999999999999999887 78888888777778888777776655544332 34555444333 33334
Q ss_pred HHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 88 ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 88 ~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
....|.+.-..++.++|....+-..+...++.+++++
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~ 279 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIF 279 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHH
Confidence 4567777888899999987777777888888887764
No 36
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.26 E-value=2.1e-05 Score=58.70 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040945 23 CVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFS 102 (125)
Q Consensus 23 ~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~ 102 (125)
..+.++....++.+ +.+|.+..-.|+++-.+...+..++.+..-+.+...| +.++.-|+.|. -+..+.|+++++.
T Consensus 47 ~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~-tgvmlmyya~~~m 121 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGF-TGVMLMYYALMYM 121 (346)
T ss_pred HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhh-hHHHHHHHHHhhc
Confidence 66666666777665 4799999999987776666666655433221222222 34556677776 4667788999999
Q ss_pred chHHHHHhhhhHHHHHHHHHHhC
Q 040945 103 SPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 103 ~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+-+.|++++++.|++++++||.+
T Consensus 122 slaDA~vItFssPvft~ifaw~~ 144 (346)
T KOG4510|consen 122 SLADAVVITFSSPVFTIIFAWAF 144 (346)
T ss_pred chhheEEEEecChHHHHHHHHHH
Confidence 99999999999999999999964
No 37
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.24 E-value=0.3 Score=37.01 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040945 18 MVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKN--RPPLTFALLCKVFILSLIGITLMQICV 95 (125)
Q Consensus 18 ~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~ 95 (125)
.+..++.||.++..=|.. ++|+.+-...-...-...-+.......... ...-+.+++..+...|... .++..++
T Consensus 153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf 228 (293)
T COG2962 153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF 228 (293)
T ss_pred HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence 456678899999887763 467776665555444443333333332222 1113566778888888886 5999999
Q ss_pred HHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 96 YTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 96 ~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
..|-++++-+..+++.|..|....++|+++
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i 258 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLI 258 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998763
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.00 E-value=0.21 Score=33.33 Aligned_cols=92 Identities=18% Similarity=0.084 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040945 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ 92 (125)
Q Consensus 13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 92 (125)
.+++.++...++=+...++-|...+ +.+..+..... . ..... . .++ ...++.|+....+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~-~~g~~~~~~~~--~------~~~~~-~------~~p---~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMS-RLPLLSHAWDF--I------AALLA-F------GLA---LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh-hCCCccchhHH--H------HHHHH-H------hcc---HHHHHHHHHHHHHHH
Confidence 3677888888888999999999987 44443322211 0 00000 0 111 225778999999999
Q ss_pred HHHHHhhcccchHHHHHhhhhHHHHHHHHHH
Q 040945 93 ICVYTGVSFSSPTLASATNNLIPAFTFLLAV 123 (125)
Q Consensus 93 ~~~~~gl~~~~a~~a~il~~~~P~~~~lla~ 123 (125)
.+|+.++++.+.+.+.-+.+..|..+.+.++
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~ 93 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAM 93 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877766
No 39
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.89 E-value=0.051 Score=41.69 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=73.6
Q ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 040945 29 TTLSKAAIS--QGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTL 106 (125)
Q Consensus 29 ~~~~K~~~~--~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~ 106 (125)
.+..|..++ +.--|..++..+...+.+.....-.....+..+..++..+..++.+|++.. +..++-+.++++.+.+.
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~-~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFC-ISHVLGNVSLSYVPVSF 111 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHH-HHHHhcchhhhccchhH
Confidence 345687777 456788999998888877776665443333222224456788899999985 89999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHh
Q 040945 107 ASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 107 a~il~~~~P~~~~lla~~ 124 (125)
.-.+=.++|.++.+++++
T Consensus 112 ~q~iKa~~P~~tvl~~~~ 129 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVL 129 (316)
T ss_pred HHHHHhhcchhHHHHHHH
Confidence 999999999999999875
No 40
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.68 E-value=0.43 Score=35.94 Aligned_cols=93 Identities=18% Similarity=0.166 Sum_probs=67.0
Q ss_pred HHHHHHHHhC-CCC--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q 040945 29 TTLSKAAISQ-GAT--PLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTGVSFSSPT 105 (125)
Q Consensus 29 ~~~~K~~~~~-~~~--p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~ 105 (125)
.+.-++...+ +.. |..+++.++....+.-.+.....++++ .++..+......+++.. ++..+.+.++++++.+
T Consensus 16 g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~al~~i~~p 91 (303)
T PF08449_consen 16 GILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK---SRKIPLKKYAILSFLFF-LASVLSNAALKYISYP 91 (303)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC---CCcChHHHHHHHHHHHH-HHHHHHHHHHHhCChH
Confidence 3444444442 444 889999999998877776654433122 22333556677777764 7889999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHhC
Q 040945 106 LASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 106 ~a~il~~~~P~~~~lla~~~ 125 (125)
.-.++=+..|+.++++++++
T Consensus 92 ~~~~~ks~~~i~vmi~~~l~ 111 (303)
T PF08449_consen 92 TQIVFKSSKPIPVMILGVLI 111 (303)
T ss_pred HHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999998653
No 41
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=95.65 E-value=0.57 Score=35.24 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH--hhcCC-C---CCCCHHHHHHHHHHHHH
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFF--LNRKN-R---PPLTFALLCKVFILSLI 86 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~--~~~~~-~---~~~~~~~~~~l~~~gl~ 86 (125)
|+.+++.+.++-|...+..++..++ +.++.+..++--..+.+...+.... .+... . ...++..+..++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999998864 7899999999999988888877766 22111 0 11234455666666666
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 87 GITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 87 ~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
+. .+..+.+.-.++.||...+++..+--+++++++++
T Consensus 235 ~~-~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~ 271 (303)
T PF08449_consen 235 GA-LGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVI 271 (303)
T ss_pred HH-HHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence 64 66677777889999999999999999999888865
No 42
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.49 E-value=0.1 Score=33.84 Aligned_cols=44 Identities=18% Similarity=0.032 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 82 ILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 82 ~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
..++.+..+++.++..++++.+.+.+..+.++.|+++.+.|+++
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~ 84 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKL 84 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677899999999999999999999999999999999864
No 43
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.19 E-value=0.58 Score=31.53 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040945 16 AAMVAVQCVQVGITTLSKAAISQGA-TPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQIC 94 (125)
Q Consensus 16 l~~l~~~~~wg~~~~~~K~~~~~~~-~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 94 (125)
+..+.+...-+....+.-+.-+ .. +|...+++-+..+.+.+..+....+++...+.+..+| +...-|+++ ...-.+
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~-~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG-~~~V~~ 80 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGK-ALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLG-VFFVLS 80 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHH-HHHHHH
Confidence 4455555555555555554443 34 5999999999999999988887766543322222222 233367776 477888
Q ss_pred HHHhhcccchHHHHHhhh
Q 040945 95 VYTGVSFSSPTLASATNN 112 (125)
Q Consensus 95 ~~~gl~~~~a~~a~il~~ 112 (125)
.....++.+++.+..+.-
T Consensus 81 ~~~~vp~lG~~~~~~l~~ 98 (138)
T PF04657_consen 81 NIILVPRLGAALTTILIV 98 (138)
T ss_pred HHHHhhhhhHHHHHHHHH
Confidence 889999999999887664
No 44
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.99 E-value=0.013 Score=44.13 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 040945 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ 92 (125)
Q Consensus 13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 92 (125)
.+....+.+.+.-+..++..|..- ++.|......+=..++.+.-.+.+......++|+ .++||..+..+|++| .+++
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iG-k~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~-cgkdr~l~~~lGvfg-figQ 267 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIG-KNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPH-CGKDRWLFVNLGVFG-FIGQ 267 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhh-ccccEEEEehHHHHHHHHHHHHHHhhccceecCc-cccceEEEEEehhhh-hHHH
Confidence 345556666666666777777643 3556554444444444444444443334444443 567788888999998 4899
Q ss_pred HHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 93 ICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 93 ~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
.+...|+|.--|+..++..++.-+++.....+
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ 299 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVL 299 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHH
Confidence 99999999999999999999999998876654
No 45
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.84 E-value=1 Score=33.86 Aligned_cols=106 Identities=8% Similarity=-0.076 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITL 90 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 90 (125)
..++.+.++++.+.+..+..+.|.. +.||.+..+=+.+.-.+.-..+....+++ ..+++.++. +..|++= .+
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~~~~---~~~k~~~~n-il~G~~w-~i 207 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFSKKP---FFEKKSWKN-ILTGLIW-GI 207 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhccccc---ccccchHHh-hHHHHHH-HH
Confidence 3568888999999999999998863 57887777666443333323332222221 223344444 3455554 37
Q ss_pred HHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 91 MQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 91 ~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
++.+++.+.+..+.+.+=.+..+.++++.+-+.+
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~ 241 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIF 241 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhhe
Confidence 8999999999999999999999999998887754
No 46
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.18 E-value=0.37 Score=37.93 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQG---ATPLILAVYADAIASLILLPLSFFLNR---KNRPPLTFALLCKVFILSL 85 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~---~~p~~~~~~r~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~~gl 85 (125)
..|.++.+.+++.+|.+..+.|+-.+++ +|--.+-.+--++..++++|..++.+. ++..-.+..+...++..++
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 6799999999999999999999866532 444444445556677788876655432 2222234445677889999
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhhh
Q 040945 86 IGITLMQICVYTGVSFSSPTLASATNN 112 (125)
Q Consensus 86 ~~~~~~~~~~~~gl~~~~a~~a~il~~ 112 (125)
+++.+.-++|.+|.-.++|-.+.+=.+
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmS 352 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMS 352 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeee
Confidence 999999999999999999887776554
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=91.76 E-value=2 Score=33.45 Aligned_cols=107 Identities=8% Similarity=-0.014 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGAT--PLILAV--YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIG 87 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~--p~~~~~--~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 87 (125)
..+++++++++++||+.+.-.|+ .+ +.+ .+..+. +..+.....+..+.....-......+.+.+..-+..|++=
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k-~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W 83 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VK-KWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW 83 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56899999999999999999998 33 444 222210 1111111111111100000111224666777777777775
Q ss_pred HHHHHHHHHHhhcccchHHHHHhh-hhHHHHHHHH
Q 040945 88 ITLMQICVYTGVSFSSPTLASATN-NLIPAFTFLL 121 (125)
Q Consensus 88 ~~~~~~~~~~gl~~~~a~~a~il~-~~~P~~~~ll 121 (125)
.+.+..++.++++.+.|.+--+. -++-+...++
T Consensus 84 -~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~ 117 (345)
T PRK13499 84 -GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLM 117 (345)
T ss_pred -HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 48999999999999988876444 3444444443
No 48
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.74 E-value=0.5 Score=30.95 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040945 19 VAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICVYTG 98 (125)
Q Consensus 19 l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~g 98 (125)
++++++||.+.++.|++.+ +.++..-.. |..-.... +. .+++.+..+ .+= -.+...|+..
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----Ll--------~n~~y~ipf---~lN--q~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----LL--------LNPKYIIPF---LLN--QSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----HH--------HhHHHHHHH---HHH--HHHHHHHHHH
Confidence 4578999999999999887 555554442 32211111 01 123333322 221 2356788899
Q ss_pred hcccchHHHHHhh-hhHHHHHHHHHHh
Q 040945 99 VSFSSPTLASATN-NLIPAFTFLLAVI 124 (125)
Q Consensus 99 l~~~~a~~a~il~-~~~P~~~~lla~~ 124 (125)
+...+-|.+.-+. ++.=+++++.+++
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~ 88 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWL 88 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHH
Confidence 9999999999885 6778888887764
No 49
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=91.73 E-value=4.8 Score=31.03 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=75.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHH-HHHHHhhcCCC----C-CCCHHHH
Q 040945 7 QLVVGLVPYAAMVAVQCVQVGITTLSKAAIS---QGATPLILAVYADAIASLILL-PLSFFLNRKNR----P-PLTFALL 77 (125)
Q Consensus 7 ~~~~~~~~~l~~l~~~~~wg~~~~~~K~~~~---~~~~p~~~~~~r~~~a~~~l~-~~~~~~~~~~~----~-~~~~~~~ 77 (125)
+...++.|...+.++.+..+.-.++.|..+. +..|++.+..+.--.+.++++ |+....+.... . ..+...
T Consensus 157 e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~- 235 (316)
T KOG1441|consen 157 ELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF- 235 (316)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh-
Confidence 4567889999999999999999999999883 369999999999999999999 88766543322 1 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhh
Q 040945 78 CKVFILSLIGITLMQICVYTGVSFSSPTLASATN 111 (125)
Q Consensus 78 ~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~ 111 (125)
.......++. .+.+...|..+.+++|-.-++..
T Consensus 236 ~~~~~~sv~~-f~~Nls~f~~ig~tSalT~~V~g 268 (316)
T KOG1441|consen 236 LILLLNSVLA-FLLNLSAFLVIGRTSALTYSVAG 268 (316)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHcccCchhhhhhc
Confidence 3333444443 46788888999999887655543
No 50
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=9.5 Score=29.38 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAV--YADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGIT 89 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~--~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 89 (125)
..+....+.=+++--...+..|.++...--|..+.. .|.....+.+...-+. +--+.++++++..+..+...++-.
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~- 88 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFV- 88 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHH-
Confidence 334444444444555566778888875444554444 8888877766665433 222345677888888887787753
Q ss_pred HHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 90 LMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 90 ~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
.....--.++|+.+...-.++=+..|+++++....
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~l 123 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVL 123 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHh
Confidence 44455557789999999999999999999876543
No 51
>PRK13499 rhamnose-proton symporter; Provisional
Probab=84.46 E-value=17 Score=28.32 Aligned_cols=111 Identities=15% Similarity=0.037 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHH---HHHHHHH-HHHHHh--hcCCC-----CCC
Q 040945 11 GLVPYAAMVAVQCVQVGIT-------TLSKAAISQGATPLILAVYADA---IASLILL-PLSFFL--NRKNR-----PPL 72 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~-------~~~K~~~~~~~~p~~~~~~r~~---~a~~~l~-~~~~~~--~~~~~-----~~~ 72 (125)
..++.+.++++.+..+.+. +..+.+...+.+|.....-++. .+..+.- ..+..+ ++++. .+-
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~ 251 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL 251 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence 3678899999999999988 7776655557888877776665 4443333 222222 22221 111
Q ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHHhhcccchHHHHH---hh-hhHHHHHHHHH
Q 040945 73 TFALLCKV----FILSLIGITLMQICVYTGVSFSSPTLASA---TN-NLIPAFTFLLA 122 (125)
Q Consensus 73 ~~~~~~~l----~~~gl~~~~~~~~~~~~gl~~~~a~~a~i---l~-~~~P~~~~lla 122 (125)
+++.+.+- ...|+.= .+.+.+|..|-+..+...+.+ +. .+.-+++.+-+
T Consensus 252 ~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG 308 (345)
T PRK13499 252 AKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG 308 (345)
T ss_pred cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh
Confidence 21222222 2333332 356778888887775554444 44 44445555444
No 52
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=84.37 E-value=4.2 Score=29.97 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 73 TFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 73 ~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
++++...+.+=+++. .+.+.+.+.++++.+|+.-.++..+-.++++++++++
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~ 64 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLL 64 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHH
Confidence 466777777777876 4899999999999999999999999999999998763
No 53
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=81.86 E-value=1.1 Score=33.51 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQI 93 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 93 (125)
.++.+++-++.||......-+- +=+|.+-+.-....|.++-..+.++ . .|..+.+.+..-++.|++= ...+.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~---~p~~T~~~~iv~~isG~~W-s~GQ~ 74 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-V---SPELTLTIFIVGFISGAFW-SFGQA 74 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-e---cCccchhhHHHHHHhhhHh-hhhhh
Confidence 4677889999999998876652 4566665555444444444443333 2 2345666666666666664 47899
Q ss_pred HHHHhhcccchHHHHHhhh
Q 040945 94 CVYTGVSFSSPTLASATNN 112 (125)
Q Consensus 94 ~~~~gl~~~~a~~a~il~~ 112 (125)
.++.+.++.+.|++.-+.+
T Consensus 75 ~Qfka~~~iGVSkamPiSt 93 (288)
T COG4975 75 NQFKAIQLIGVSKAMPIST 93 (288)
T ss_pred hhhhheeeeeeeccccccc
Confidence 9999999999999886664
No 54
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=76.29 E-value=7.4 Score=30.86 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 81 FILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 81 ~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+..+.+ -.++++.++.++++++.+...++.++.-+|+..+|.+|
T Consensus 163 l~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if 206 (416)
T KOG2765|consen 163 LFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIF 206 (416)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHc
Confidence 344443 45889999999999999999999999999999998765
No 55
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=72.45 E-value=19 Score=25.68 Aligned_cols=24 Identities=13% Similarity=-0.070 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAIS 37 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~ 37 (125)
+....++.+++.|..+....+-+.
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667677777766665554433
No 56
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=71.38 E-value=21 Score=27.75 Aligned_cols=99 Identities=14% Similarity=0.028 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 040945 25 QVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKN---RPPLTFALLC-KVFILSLIGITLMQICVYTGVS 100 (125)
Q Consensus 25 wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~-~l~~~gl~~~~~~~~~~~~gl~ 100 (125)
-|+.+...+.-.+ --=|+..+..+..+=..+-....+..+++. +.+.+|++-. ++...|+. +.+.-.+-|++++
T Consensus 29 i~Ltf~~~~~~~~-f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~ 106 (349)
T KOG1443|consen 29 IGLTFYFKWLTKN-FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALA-TALDIGLSNWSLE 106 (349)
T ss_pred HHHHHHhhhhhcC-cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhh-hhcccccccceee
Confidence 3445555554333 234677777766554333333332222211 2245665543 44455555 4688899999999
Q ss_pred ccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 101 FSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 101 ~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+++-+.-+..=+..++|..+++.+|
T Consensus 107 yVtlSlYTM~KSSsi~FIllFs~if 131 (349)
T KOG1443|consen 107 YVTLSLYTMTKSSSILFILLFSLIF 131 (349)
T ss_pred eeeeeeeeeccccHHHHHHHHHHHH
Confidence 9999988888889999999988764
No 57
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=70.42 E-value=35 Score=24.15 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
.....+..+-+++.++..-++...+.++++.+++++
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~ 198 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVR 198 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999999865
No 58
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=61.42 E-value=33 Score=25.59 Aligned_cols=57 Identities=5% Similarity=-0.136 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCHHHHHHHHH----HHHHHHHHHHHHHhhc
Q 040945 10 VGLVPYAAMVAVQCVQVGITTLSKAAISQG-------ATPLILAVYAD----AIASLILLPLSFFLNR 66 (125)
Q Consensus 10 ~~~~~~l~~l~~~~~wg~~~~~~K~~~~~~-------~~p~~~~~~r~----~~a~~~l~~~~~~~~~ 66 (125)
+|..+..+.+++.+++|.++.-.+...+++ .+++...+-.+ +.+++.+...+.++++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn 247 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRN 247 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcC
Confidence 477899999999999999999999887632 24555555554 4555666666655443
No 59
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=60.82 E-value=64 Score=23.69 Aligned_cols=108 Identities=10% Similarity=0.071 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHHHHHHhhcCCCC------CCCHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADA-IASLILLPLSFFLNRKNRP------PLTFALLCKVFIL 83 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~-~a~~~l~~~~~~~~~~~~~------~~~~~~~~~l~~~ 83 (125)
...|.++.++++++-|...+...+.++++-.|+...-.+.- .+.++..+.....+..+.. .+++..|..++..
T Consensus 112 ~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~ 191 (244)
T PF04142_consen 112 PLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ 191 (244)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence 45788889999999999999999888754456666555554 4444444433333222111 1233333333333
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHH
Q 040945 84 SLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAV 123 (125)
Q Consensus 84 gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~ 123 (125)
+ +.-.+.-.-+||.+.-.=+.-+...-+.+.++++
T Consensus 192 a-----~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~ 226 (244)
T PF04142_consen 192 A-----IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSV 226 (244)
T ss_pred H-----HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3 3334444556777665555555555555555544
No 60
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.02 E-value=57 Score=25.15 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCC-CHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRK----NRPPL-TFALLCKVFILS 84 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~~~~----~~~~~-~~~~~~~l~~~g 84 (125)
.+.|.++-+.+.+.=+.+.+..|+.+.. +-.-..++.+.-+.+.++++|....-+.. ..++. +++.|..+...|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 3568888899999999999999976653 22234677777889999999988664321 11233 677888888888
Q ss_pred HHHHHHHH
Q 040945 85 LIGITLMQ 92 (125)
Q Consensus 85 l~~~~~~~ 92 (125)
++|..+++
T Consensus 263 lfgF~mgy 270 (347)
T KOG1442|consen 263 LFGFAMGY 270 (347)
T ss_pred HHHHHhhh
Confidence 88764443
No 61
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=59.99 E-value=27 Score=21.56 Aligned_cols=35 Identities=14% Similarity=-0.048 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcccchHHH-HHhhhhHHHHHHHHHH
Q 040945 89 TLMQICVYTGVSFSSPTLA-SATNNLIPAFTFLLAV 123 (125)
Q Consensus 89 ~~~~~~~~~gl~~~~a~~a-~il~~~~P~~~~lla~ 123 (125)
.+++.++..++|+.+.+.+ ++...+..+.+.+.++
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~ 75 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGV 75 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555 3344455555555444
No 62
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=59.70 E-value=84 Score=24.67 Aligned_cols=111 Identities=19% Similarity=0.177 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCC------CCHHHHHH
Q 040945 13 VPYAAMVAVQCVQVGITTLSKAAISQG---ATPLILAVYADAIASLILLPLSFFLNRK----NRPP------LTFALLCK 79 (125)
Q Consensus 13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~---~~p~~~~~~r~~~a~~~l~~~~~~~~~~----~~~~------~~~~~~~~ 79 (125)
.-++.++...+.++...+..|.....+ +.|.+..+.--.+-.++-....+.+.++ .... -++++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 556667778888999999999876545 6677777777776666555555554311 1111 13545566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 80 VFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 80 l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
+.+=+++.. +.+-++|.++.+.+|+.-.+...+--..++++..+
T Consensus 95 ~~vPa~iYa-lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl 138 (345)
T KOG2234|consen 95 VSVPALIYA-LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVL 138 (345)
T ss_pred HHHHHHHHH-HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHH
Confidence 666666664 66679999999999999999888877777777654
No 63
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.02 E-value=56 Score=22.46 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLM 91 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 91 (125)
....+..+.+..+-.....+.-...+..-+|+...++.+..+++++..+.....+++.....++.-.+...-|++|. ++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hh
Confidence 34445555555555554444444333233699999999999999999888774433222211111122334455553 44
Q ss_pred HHHHHHhhcccchHHHHHhh-hhHHHHHHH
Q 040945 92 QICVYTGVSFSSPTLASATN-NLIPAFTFL 120 (125)
Q Consensus 92 ~~~~~~gl~~~~a~~a~il~-~~~P~~~~l 120 (125)
-..-.....+.+++.+..+. .-+=+...+
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~gll 112 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLL 112 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 44444556777766655433 333333333
No 64
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=53.97 E-value=78 Score=23.91 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhh-hHHHHHHHHHHh
Q 040945 74 FALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNN-LIPAFTFLLAVI 124 (125)
Q Consensus 74 ~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~-~~P~~~~lla~~ 124 (125)
.+.+..-+..|++= .+.+..++.+.++.+.|++--+.. ++=+.+.+++++
T Consensus 42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~ 92 (269)
T PF06800_consen 42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVL 92 (269)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHh
Confidence 46677777777775 489999999999999999886664 554555555543
No 65
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=52.31 E-value=12 Score=27.46 Aligned_cols=37 Identities=30% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 89 TLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 89 ~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
+..++.|..+++.++|+.++-+..-.-.++.+++|++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IV 100 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIV 100 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHH
Confidence 3678999999999999999999988888888888863
No 66
>PF12832 MFS_1_like: MFS_1 like family
Probab=51.45 E-value=50 Score=19.62 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHH
Q 040945 77 LCKVFILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLA 122 (125)
Q Consensus 77 ~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla 122 (125)
+.+.+..|..+...++.-.+.-..-.++.+.+++....|....+..
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~ 52 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAP 52 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566777888877888877777788899999999998888776543
No 67
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=48.74 E-value=61 Score=19.82 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=11.1
Q ss_pred CCchhhHHhhhhHHHHH
Q 040945 1 MGMGVKQLVVGLVPYAA 17 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~l~ 17 (125)
+||++||..+.......
T Consensus 36 lG~s~~~i~~~~~~e~~ 52 (121)
T PF02687_consen 36 LGASKRQIRKMFLYEAL 52 (121)
T ss_pred cCCChhhhhHHHHHHHH
Confidence 57888876666655443
No 68
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=47.97 E-value=1.2e+02 Score=22.96 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH-
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQ- 92 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~- 92 (125)
-.+..+++.+.=+.-....|...+++.-......+...+.++.++..-...++++.+..+.-.+..-+..|+.+. ++-
T Consensus 86 l~l~ilvatiPa~v~Gl~~~d~i~~~l~~~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ~-lAl~ 164 (270)
T COG1968 86 LWLKILVATIPAVVLGLLFKDFIKSHLFNPRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQC-LALI 164 (270)
T ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhccccCcCChhhCCHHHHHHHHHHHH-HHHc
Confidence 344455666665666666665444344335555666666666555544332211222233233455667788775 331
Q ss_pred -----------HHHHHhhcccchHHHHHhhhhHHHH
Q 040945 93 -----------ICVYTGVSFSSPTLASATNNLIPAF 117 (125)
Q Consensus 93 -----------~~~~~gl~~~~a~~a~il~~~~P~~ 117 (125)
.....|.++-.|.+-|.+....-++
T Consensus 165 PG~SRSGaTI~~~lllG~~r~~AaefSFlLaIP~m~ 200 (270)
T COG1968 165 PGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMF 200 (270)
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665544333
No 69
>COG4760 Predicted membrane protein [Function unknown]
Probab=41.02 E-value=1.4e+02 Score=21.91 Aligned_cols=91 Identities=23% Similarity=0.229 Sum_probs=44.1
Q ss_pred chhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 040945 3 MGVKQLVVGLVPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFI 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (125)
||..|...|.-..++.++...+.+.....+..++. .|.++.. .++.+++..+.-+ +++++.+ .-...+-..
T Consensus 49 mTiddvvtkTG~tLav~~vtavvs~~~~lv~p~La---~~ltlvG---aiGGlilvLvatF-gkK~~sp--ai~l~YAv~ 119 (276)
T COG4760 49 MTIDDVVTKTGATLAVLLVTAVVSFFLVLVNPALA---MPLTLVG---AIGGLILVLVATF-GKKQWSP--AIVLSYAVL 119 (276)
T ss_pred eeecchhhhhhHHHHHHHHHHHHHHHHHhcCHHhc---ccHhHHH---HhhhHHHHHHHHh-ccccCCh--HHHHHHHHH
Confidence 56666555555555555555444444444444432 3444433 4555555555544 2333221 122344455
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 040945 83 LSLIGITLMQICVYTGVSFS 102 (125)
Q Consensus 83 ~gl~~~~~~~~~~~~gl~~~ 102 (125)
=|++-..+.+.+-+......
T Consensus 120 EGlFlGaiS~lla~ftV~~a 139 (276)
T COG4760 120 EGLFLGAISFLLANFTVYEA 139 (276)
T ss_pred HHHHHHHHHHHhccceEEec
Confidence 56665555555555444333
No 70
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=36.16 E-value=34 Score=23.18 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=22.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040945 8 LVVGLVPYAAMVAVQCVQVGITTLSKAA 35 (125)
Q Consensus 8 ~~~~~~~~l~~l~~~~~wg~~~~~~K~~ 35 (125)
++.+..+.++.-+-..+|+++++..|-.
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l 128 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTL 128 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhcccc
Confidence 3456778888888899999999998863
No 71
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=32.48 E-value=42 Score=25.62 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH-HHHHHHHH
Q 040945 13 VPYAAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFIL-SLIGITLM 91 (125)
Q Consensus 13 ~~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~ 91 (125)
+|..+.++.+.+++.+...-..... +.|-.++...--.+++++-.+-... .+.....++|. +....++ ..+...+.
T Consensus 166 ~GD~lvi~GATlYaVSNv~EEflvk-n~d~~elm~~lgLfGaIIsaIQ~i~-~~~~~~tl~w~-~~i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 166 KGDFLVIAGATLYAVSNVSEEFLVK-NADRVELMGFLGLFGAIISAIQFIF-ERHHVSTLHWD-SAIFLYLRFALTMFLL 242 (336)
T ss_pred cCcEEEEecceeeeeccccHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHhh-hccceeeEeeh-HHHHHHHHHHHHHHHH
Confidence 4566677888899999888887775 7888888777777777777776444 33333223331 2222222 33334444
Q ss_pred HHHHHHhhcccchHHH
Q 040945 92 QICVYTGVSFSSPTLA 107 (125)
Q Consensus 92 ~~~~~~gl~~~~a~~a 107 (125)
|.+.-.-+|..|++.-
T Consensus 243 Ysl~pil~k~~~aT~~ 258 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMF 258 (336)
T ss_pred HHhhHHheecCCceEE
Confidence 4444455566666543
No 72
>KOG3236 consensus Predicted membrane protein [Function unknown]
Probab=31.65 E-value=2.1e+02 Score=20.90 Aligned_cols=56 Identities=5% Similarity=0.068 Sum_probs=30.6
Q ss_pred chhhHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 040945 3 MGVKQLVVGLVPYAAMVA-VQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPL 60 (125)
Q Consensus 3 ~~~~~~~~~~~~~l~~l~-~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~ 60 (125)
|+++|.+++.++..-.+. +++.=+...-...+.. .+++-.+...|...+.+.-...
T Consensus 156 itr~d~~~~~~p~Vsli~~~aV~~a~~~~~~~hl~--~l~gW~~v~f~~a~s~vmaf~t 212 (225)
T KOG3236|consen 156 ITRTDLKFLFRPAVSLILACAVFKAFVPETTSHLK--SLGGWHFVAFRAAVSLVMAFIT 212 (225)
T ss_pred heeccccccccchhHHHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHH
Confidence 345566666554444333 3344444444444433 4777788888887766554443
No 73
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=31.10 E-value=1.6e+02 Score=21.34 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 040945 11 GLVPYAAMVAVQCVQVGITTLS 32 (125)
Q Consensus 11 ~~~~~l~~l~~~~~wg~~~~~~ 32 (125)
+..|.+-.++.++.-|+...+.
T Consensus 123 ~~~GlItlll~a~vgGfamy~m 144 (226)
T COG4858 123 QVYGLITLLLTAVVGGFAMYIM 144 (226)
T ss_pred cchhHHHHHHHHHhhhHHHHHH
Confidence 3444555555555555544443
No 74
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=30.30 E-value=2.6e+02 Score=21.74 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 040945 9 VVGLVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFL 64 (125)
Q Consensus 9 ~~~~~~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~ 64 (125)
++-..|.++.+.+.++-+.-++.-.+-+.+ +++|...+.+.-.++.+++..+..+.
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m 228 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPM 228 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHH
Confidence 445678899999999999999988776654 89999999999988866665555443
No 75
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=28.57 E-value=2.8e+02 Score=21.49 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcC--CCC---CCCHHHHHHHHHHHH
Q 040945 12 LVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRK--NRP---PLTFALLCKVFILSL 85 (125)
Q Consensus 12 ~~~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~~~~--~~~---~~~~~~~~~l~~~gl 85 (125)
..|+..+-.+-++=+.-.-.-.+++.. +-+..++.++.+.++.+.+.......+.- .++ +-+++...+.+..++
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~ 268 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL 268 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence 344444444444445555555555542 45667888888888888777766554321 110 012445566665555
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHh
Q 040945 86 IGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVI 124 (125)
Q Consensus 86 ~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~ 124 (125)
.+. ++..+-..-++.-||..++.++..--.++++++++
T Consensus 269 ~gy-lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfl 306 (367)
T KOG1582|consen 269 AGY-LGIVFVLALIKLFGALIAATVTTARKAVTILLSFL 306 (367)
T ss_pred HhH-hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHH
Confidence 543 45555555567778888888888877788887765
No 76
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=28.15 E-value=1.7e+02 Score=18.87 Aligned_cols=26 Identities=19% Similarity=-0.052 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhcccchHHHHHhhh
Q 040945 87 GITLMQICVYTGVSFSSPTLASATNN 112 (125)
Q Consensus 87 ~~~~~~~~~~~gl~~~~a~~a~il~~ 112 (125)
|..++..+...|+.-.+|+..+-...
T Consensus 17 Gg~~Y~~l~~~G~d~~~AGi~sq~~l 42 (104)
T PF11460_consen 17 GGLLYGGLQAAGLDSLSAGIWSQALL 42 (104)
T ss_pred HHHHHHHHHHcCCCchhhhHHHHHHH
Confidence 33467777777887777777775543
No 77
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.91 E-value=2.9e+02 Score=21.45 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=67.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CC-CCCHHHHHH
Q 040945 7 QLVVGLVPYAAMVAVQCVQVGITTLSKAAISQ-GATPLILAVYADAIASLILLPLSFFLNRKN-----RP-PLTFALLCK 79 (125)
Q Consensus 7 ~~~~~~~~~l~~l~~~~~wg~~~~~~K~~~~~-~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~-----~~-~~~~~~~~~ 79 (125)
|...+..||.++....+.-.......|+-.+. +.+-..+.++.-+.+...+....++.+..+ .+ ..+...+..
T Consensus 151 d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~ 230 (314)
T KOG1444|consen 151 DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVV 230 (314)
T ss_pred cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHH
Confidence 45566779999999999999999999987764 577778888888888877777765544211 11 123445667
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 040945 80 VFILSLIGITLMQICVYTGVSFSSPTLAS 108 (125)
Q Consensus 80 l~~~gl~~~~~~~~~~~~gl~~~~a~~a~ 108 (125)
+...|+++..+. .+-++-.+..++...+
T Consensus 231 ~~lScv~gf~is-y~s~~ct~~~SAtT~t 258 (314)
T KOG1444|consen 231 MLLSCVMGFGIS-YTSFLCTRVNSATTTT 258 (314)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhcccccee
Confidence 777777776444 4444555555544433
No 78
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.04 E-value=56 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=5.4
Q ss_pred HHHhhhhHHHHHHH
Q 040945 107 ASATNNLIPAFTFL 120 (125)
Q Consensus 107 a~il~~~~P~~~~l 120 (125)
++++.|..|++..+
T Consensus 70 aa~l~Y~lPll~li 83 (135)
T PF04246_consen 70 AAFLVYLLPLLALI 83 (135)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333433333
No 79
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=26.81 E-value=2.2e+02 Score=22.17 Aligned_cols=97 Identities=19% Similarity=0.136 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---------------CCCHHHHHHH
Q 040945 23 CVQVGITTLSKAAIS---QG----ATPLILAVYADAIASLILLPLSFFLNRKNRP---------------PLTFALLCKV 80 (125)
Q Consensus 23 ~~wg~~~~~~K~~~~---~~----~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~---------------~~~~~~~~~l 80 (125)
+.-+.+.+.+|.+-+ ++ -+|+..+...|+.=..|++...+++.+.+.+ ++++. ..
T Consensus 13 vsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~---lf 89 (372)
T KOG3912|consen 13 VSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPV---LF 89 (372)
T ss_pred hhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcc---ee
Confidence 334567777886543 23 3477777777777778888877776442211 12221 11
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHH
Q 040945 81 FILSLIGITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAV 123 (125)
Q Consensus 81 ~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~ 123 (125)
+.=++.- ..+..+.|.|+.+++|+.--.+=...-+|+.+++.
T Consensus 90 l~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst 131 (372)
T KOG3912|consen 90 LPPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFST 131 (372)
T ss_pred cChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHH
Confidence 1223333 35668889999999999877776666677766664
No 80
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=26.65 E-value=1.1e+02 Score=16.11 Aligned_cols=27 Identities=4% Similarity=-0.004 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040945 71 PLTFALLCKVFILSLIGITLMQICVYT 97 (125)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~~ 97 (125)
..++|++..++..|..+......++=+
T Consensus 5 dm~RR~lmN~ll~Gava~~a~~~lyP~ 31 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVAVPAGGMLYPY 31 (39)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 346778888888888776655555433
No 81
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=26.44 E-value=47 Score=19.50 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040945 9 VVGLVPYAAMVAVQCVQVGITTLSKA 34 (125)
Q Consensus 9 ~~~~~~~l~~l~~~~~wg~~~~~~K~ 34 (125)
+.+..+.+..-+-..+|+.+++..|.
T Consensus 30 s~~~LgwIL~gvf~liw~ly~~~~~~ 55 (67)
T PLN00082 30 SNGKLTWILVGVTALIWALYFSYSST 55 (67)
T ss_pred cCchhhhHHHHHHHHHHHHHhheecc
Confidence 34566777788888999999997775
No 82
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=26.42 E-value=2.1e+02 Score=19.22 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhh
Q 040945 71 PLTFALLCKVFILSLIGITLMQICVYTGVSFSSPTLASATNN 112 (125)
Q Consensus 71 ~~~~~~~~~l~~~gl~~~~~~~~~~~~gl~~~~a~~a~il~~ 112 (125)
+.++..+.....+.+++....|..-.++.|+-++|+.+..-+
T Consensus 27 ~~~~~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~ga 68 (140)
T PF04306_consen 27 EFGWWFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWGA 68 (140)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 356767777777777887888888888888888888776654
No 83
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=24.51 E-value=68 Score=21.94 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=4.0
Q ss_pred HHhhhhHHHHH
Q 040945 108 SATNNLIPAFT 118 (125)
Q Consensus 108 ~il~~~~P~~~ 118 (125)
+.+.|+.|++.
T Consensus 78 a~lvYllPLl~ 88 (154)
T PRK10862 78 ALLVYMTPLVG 88 (154)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 84
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=24.41 E-value=79 Score=21.73 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=11.6
Q ss_pred cchHHHHHhhhhHHHHHHHHHH
Q 040945 102 SSPTLASATNNLIPAFTFLLAV 123 (125)
Q Consensus 102 ~~a~~a~il~~~~P~~~~lla~ 123 (125)
-+.-+++.+.|+.|++.++++.
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~ 93 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGA 93 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 85
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=24.14 E-value=2.4e+02 Score=19.14 Aligned_cols=11 Identities=9% Similarity=0.407 Sum_probs=5.9
Q ss_pred hhHHHHHHHHH
Q 040945 112 NLIPAFTFLLA 122 (125)
Q Consensus 112 ~~~P~~~~lla 122 (125)
...|+.+.++-
T Consensus 119 ~~lp~vaii~~ 129 (149)
T PF14126_consen 119 FFLPLVAIIFL 129 (149)
T ss_pred HHHHHHHHHHH
Confidence 35566665543
No 86
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=24.09 E-value=2.1e+02 Score=18.56 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH-------HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 040945 19 VAVQCVQVGIT-------TLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALL 77 (125)
Q Consensus 19 l~~~~~wg~~~-------~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 77 (125)
.+..++||..+ |..|.+.+ +.++.++-..|-.++..++.++.....++ ++++.++
T Consensus 32 ~ail~SWgIAffEY~l~VPANRiG~~-~~s~~QLKi~QEvitL~vF~~Fsv~~l~E---~l~~n~l 93 (108)
T PF04342_consen 32 IAILISWGIAFFEYCLQVPANRIGYQ-TFSLAQLKIIQEVITLVVFAPFSVFYLGE---PLKWNYL 93 (108)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhcc-ccCHHHHHHHHHHHhhheeHHHHHHHhCC---CccHHHH
Confidence 44556777654 68888887 79999999999999999999988665543 3445444
No 87
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=23.66 E-value=54 Score=21.44 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040945 16 AAMVAVQCVQVGITTLSKAAISQGATPLILAVYADAIASLILLPLSFFLNRKNRPPLTFALLCKVFILSLIGITLMQICV 95 (125)
Q Consensus 16 l~~l~~~~~wg~~~~~~K~~~~~~~~p~~~~~~r~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 95 (125)
..++.++.+||...++.|.+.. +++-..-.. | ...-..+..+.. -.+++.+..+++.=. +..+|
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~--------k~~~~lqe~~tl-~l~w~Y~iPFllNqc-----gSaly 69 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSS-R--------KIMIALQEMKTL-FLNWEYLIPFLLNQC-----GSALY 69 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCch-H--------HHHHHHHHHHHH-HHhHHHHHHHHHHHh-----hHHHH
Confidence 3478889999999999998765 544332221 0 000011111111 134555554432211 34667
Q ss_pred HHhhcccchHHHHHhhh-hHHHHHHHHH
Q 040945 96 YTGVSFSSPTLASATNN-LIPAFTFLLA 122 (125)
Q Consensus 96 ~~gl~~~~a~~a~il~~-~~P~~~~lla 122 (125)
|.-++..+-+.+.-+.| +.-.++...+
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G 97 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFG 97 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHH
Confidence 77788888877776665 4445555444
No 88
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=23.64 E-value=1.5e+02 Score=16.64 Aligned_cols=30 Identities=7% Similarity=-0.124 Sum_probs=21.9
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040945 5 VKQLVVGLVPYAAMVAVQCVQVGITTLSKA 34 (125)
Q Consensus 5 ~~~~~~~~~~~l~~l~~~~~wg~~~~~~K~ 34 (125)
++.+++|..+.++...+...+|-..++.=.
T Consensus 15 rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 15 RSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888888888877766543
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=22.64 E-value=97 Score=23.42 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHHHH
Q 040945 14 PYAAMVAVQCVQVGITTLSKAAISQGATPL--ILAVYADAIASLILLPLSFFLNRKN----RPPLTFALLCKVFILSLIG 87 (125)
Q Consensus 14 ~~l~~l~~~~~wg~~~~~~K~~~~~~~~p~--~~~~~r~~~a~~~l~~~~~~~~~~~----~~~~~~~~~~~l~~~gl~~ 87 (125)
|.+.++.+-..=|+....-.+... ...+- .+.+..-+-+++.+..-.++.+.-+ ....++..|--+...++.+
T Consensus 173 GElLL~lSL~mDGlTg~~Qdrira-~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 173 GELLLILSLAMDGLTGSIQDRIRA-SYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred HHHHHHHHHHhcccchhHHHHHHH-hhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566666666666666665554333 22222 2222222333433333332222100 0112334455566677766
Q ss_pred HHHHHHHHHHhhcccchHHHHHhhhhHHHHHHHHHHhC
Q 040945 88 ITLMQICVYTGVSFSSPTLASATNNLIPAFTFLLAVIF 125 (125)
Q Consensus 88 ~~~~~~~~~~gl~~~~a~~a~il~~~~P~~~~lla~~~ 125 (125)
++++.+.|.-..+-||-.-|+++.+--.|+++.++++
T Consensus 252 -~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVll 288 (337)
T KOG1580|consen 252 -CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLL 288 (337)
T ss_pred -HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHH
Confidence 5889999999999999999999999999999988763
No 90
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=22.47 E-value=63 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040945 9 VVGLVPYAAMVAVQCVQVGITTLSKAA 35 (125)
Q Consensus 9 ~~~~~~~l~~l~~~~~wg~~~~~~K~~ 35 (125)
+.+..+.+++-+-..+|+++++..|-.
T Consensus 91 sn~~LgwIL~gVf~liw~ly~~~~~~l 117 (128)
T PLN00077 91 SNNLLGWILLGVFGLIWSLYTTYTSDL 117 (128)
T ss_pred cCchhhHHHHhHHHHHHHHHhheeccc
Confidence 445677788888889999999998864
No 91
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=21.79 E-value=3.3e+02 Score=19.95 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=4.8
Q ss_pred HHHhhhhHHHHH
Q 040945 107 ASATNNLIPAFT 118 (125)
Q Consensus 107 a~il~~~~P~~~ 118 (125)
....-...|...
T Consensus 113 ~~~~D~~ap~~~ 124 (256)
T PF01790_consen 113 WKLLDAAAPGLA 124 (256)
T ss_pred HHHHHHHHHHHH
Confidence 333334444433
No 92
>PF14328 DUF4385: Domain of unknown function (DUF4385)
Probab=20.08 E-value=37 Score=23.16 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=8.9
Q ss_pred CCchhhHHhhhhH
Q 040945 1 MGMGVKQLVVGLV 13 (125)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (125)
||||+..++.|..
T Consensus 82 MG~TRarRYANhk 94 (145)
T PF14328_consen 82 MGYTRARRYANHK 94 (145)
T ss_pred hchhHHHHhhcCC
Confidence 7888777666654
Done!