Query 040945
Match_columns 125
No_of_seqs 110 out of 1072
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 21:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.5 0.003 1E-07 41.7 4.1 44 82-125 34-78 (137)
2 3b5d_A Multidrug transporter E 96.0 0.1 3.4E-06 32.8 9.3 44 82-125 34-78 (110)
3 1q90_R Cytochrome B6-F complex 15.7 1.5E+02 0.005 15.6 3.4 26 70-95 7-32 (49)
4 3sxu_B DNA polymerase III subu 13.5 40 0.0014 21.8 0.0 9 1-9 1-9 (138)
5 2cnr_A FAS, ACP, acyl carrier 9.4 1.9E+02 0.0065 15.6 2.1 13 1-13 1-13 (82)
6 3arc_L Photosystem II reaction 7.1 2.9E+02 0.0099 13.5 3.4 22 8-29 14-35 (37)
7 2l4b_A Acyl carrier protein; i 5.7 3.3E+02 0.011 15.0 1.9 14 3-16 4-17 (88)
8 2l2t_A Receptor tyrosine-prote 5.2 4.2E+02 0.014 13.4 3.1 6 60-65 31-36 (44)
9 2ks1_B Epidermal growth factor 4.8 4.5E+02 0.015 13.2 3.2 8 58-65 30-37 (44)
10 2l25_A Uncharacterized protein 4.4 6.6E+02 0.023 15.7 2.9 16 2-17 1-16 (141)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.49 E-value=0.003 Score=41.73 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHh-hhhHHHHHHHHHHhC
Q 040945 82 ILSLIGITLMQICVYTGVSFSSPTLASAT-NNLIPAFTFLLAVIF 125 (125)
Q Consensus 82 ~~gl~~~~~~~~~~~~gl~~~~a~~a~il-~~~~P~~~~lla~~~ 125 (125)
..|++++.+++.+++.++++.+++.+..+ .++.|++++++++++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~ 78 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF 78 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999888 899999999999763
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.01 E-value=0.1 Score=32.81 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHh-hhhHHHHHHHHHHhC
Q 040945 82 ILSLIGITLMQICVYTGVSFSSPTLASAT-NNLIPAFTFLLAVIF 125 (125)
Q Consensus 82 ~~gl~~~~~~~~~~~~gl~~~~a~~a~il-~~~~P~~~~lla~~~ 125 (125)
..++.+..+++.++..++|+.+.+.+..+ ..+.|+++.++++++
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~ 78 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF 78 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH
Confidence 46666777899999999999999999877 899999999998763
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=15.67 E-value=1.5e+02 Score=15.58 Aligned_cols=26 Identities=8% Similarity=0.289 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040945 70 PPLTFALLCKVFILSLIGITLMQICV 95 (125)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~~~ 95 (125)
+..++|++...+..|..+....-.++
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~ 32 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLAL 32 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888877777655443433
No 4
>3sxu_B DNA polymerase III subunit PSI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} PDB: 1em8_B* 3gli_O*
Probab=13.54 E-value=40 Score=21.81 Aligned_cols=9 Identities=22% Similarity=0.376 Sum_probs=0.0
Q ss_pred CCchhhHHh
Q 040945 1 MGMGVKQLV 9 (125)
Q Consensus 1 ~~~~~~~~~ 9 (125)
|||+++|.+
T Consensus 1 ~~~~rrd~~ 9 (138)
T 3sxu_B 1 MGTSRRDWQ 9 (138)
T ss_dssp ---------
T ss_pred CCccHHHHH
Confidence 677777643
No 5
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=9.41 E-value=1.9e+02 Score=15.55 Aligned_cols=13 Identities=31% Similarity=0.550 Sum_probs=7.5
Q ss_pred CCchhhHHhhhhH
Q 040945 1 MGMGVKQLVVGLV 13 (125)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (125)
|.|++.+..++..
T Consensus 1 m~m~~~~i~~~l~ 13 (82)
T 2cnr_A 1 MAATQEEIVAGLA 13 (82)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5677766544443
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=7.05 E-value=2.9e+02 Score=13.49 Aligned_cols=22 Identities=0% Similarity=-0.143 Sum_probs=15.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 040945 8 LVVGLVPYAAMVAVQCVQVGIT 29 (125)
Q Consensus 8 ~~~~~~~~l~~l~~~~~wg~~~ 29 (125)
|-.-++|.+..+..++.++.++
T Consensus 14 RTSLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhc
Confidence 3344678888888888887765
No 7
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=5.68 E-value=3.3e+02 Score=14.97 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=7.5
Q ss_pred chhhHHhhhhHHHH
Q 040945 3 MGVKQLVVGLVPYA 16 (125)
Q Consensus 3 ~~~~~~~~~~~~~l 16 (125)
|++.+..++....+
T Consensus 4 m~~~~i~~~v~~~i 17 (88)
T 2l4b_A 4 MVSEEIKAQVMESV 17 (88)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666555544443
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.18 E-value=4.2e+02 Score=13.42 Aligned_cols=6 Identities=0% Similarity=0.063 Sum_probs=2.2
Q ss_pred HHHHhh
Q 040945 60 LSFFLN 65 (125)
Q Consensus 60 ~~~~~~ 65 (125)
+.++++
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=4.77 E-value=4.5e+02 Score=13.25 Aligned_cols=8 Identities=13% Similarity=-0.280 Sum_probs=2.9
Q ss_pred HHHHHHhh
Q 040945 58 LPLSFFLN 65 (125)
Q Consensus 58 ~~~~~~~~ 65 (125)
..+.++++
T Consensus 30 ~~~~~~RR 37 (44)
T 2ks1_B 30 GIGLFMRR 37 (44)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhh
Confidence 33333333
No 10
>2l25_A Uncharacterized protein; JCSG, structural genomics, PSI-biology, protein structure in joint center for structural genomics; NMR {Bordetella bronchiseptica}
Probab=4.43 E-value=6.6e+02 Score=15.67 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=9.6
Q ss_pred CchhhHHhhhhHHHHH
Q 040945 2 GMGVKQLVVGLVPYAA 17 (125)
Q Consensus 2 ~~~~~~~~~~~~~~l~ 17 (125)
||+.+++++-+...+.
T Consensus 1 ~Mt~~~Ir~al~~rl~ 16 (141)
T 2l25_A 1 GMSQDLIRAAFEKRLS 16 (141)
T ss_dssp CCTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6777766655555443
Done!