Query 040945
Match_columns 125
No_of_seqs 110 out of 1072
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 21:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040945.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040945hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 10.2 92 0.0067 14.0 3.2 20 10-29 16-35 (37)
2 d1q90r_ f.23.12.1 (R:) ISP sub 9.4 1.1E+02 0.0077 14.2 3.4 24 70-93 5-28 (39)
3 d2iuba2 f.17.3.1 (A:286-349) M 6.5 1.4E+02 0.01 14.7 1.9 8 22-29 23-30 (64)
4 d1x62a1 g.39.1.3 (A:43-73) PDZ 5.5 95 0.0069 13.5 0.7 6 2-7 6-11 (31)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 5.2 1.5E+02 0.011 12.1 1.2 8 21-28 11-18 (27)
6 d1huua_ a.55.1.1 (A:) HU prote 5.1 1.1E+02 0.0081 16.2 1.0 8 3-10 1-8 (90)
7 d1owfb_ a.55.1.1 (B:) Integrat 4.8 1.2E+02 0.009 16.2 1.0 9 3-11 1-9 (94)
8 d1q90a3 f.23.23.1 (A:248-292) 4.7 2.2E+02 0.016 13.4 2.8 25 42-66 2-26 (45)
9 d1mula_ a.55.1.1 (A:) HU prote 4.6 1.3E+02 0.0093 16.0 1.0 6 3-8 1-6 (90)
10 d2o97b1 a.55.1.1 (B:1-90) HU p 4.3 1.4E+02 0.01 15.8 1.0 10 3-12 1-10 (90)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.19 E-value=92 Score=14.01 Aligned_cols=20 Identities=0% Similarity=-0.120 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 040945 10 VGLVPYAAMVAVQCVQVGIT 29 (125)
Q Consensus 10 ~~~~~~l~~l~~~~~wg~~~ 29 (125)
.-.+|.+.....+++++.++
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34677777777788887765
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.39 E-value=1.1e+02 Score=14.16 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 040945 70 PPLTFALLCKVFILSLIGITLMQI 93 (125)
Q Consensus 70 ~~~~~~~~~~l~~~gl~~~~~~~~ 93 (125)
+.-.+|++..++..|..+......
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~ 28 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTL 28 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhh
Confidence 334577888888888776554433
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.49 E-value=1.4e+02 Score=14.66 Aligned_cols=8 Identities=0% Similarity=-0.521 Sum_probs=2.5
Q ss_pred HHHHHHHH
Q 040945 22 QCVQVGIT 29 (125)
Q Consensus 22 ~~~wg~~~ 29 (125)
+-+||.++
T Consensus 23 ~gifGMN~ 30 (64)
T d2iuba2 23 AGIYGMNF 30 (64)
T ss_dssp TTSCC---
T ss_pred HhhhccCC
Confidence 34556554
No 4
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.55 E-value=95 Score=13.50 Aligned_cols=6 Identities=50% Similarity=0.783 Sum_probs=3.2
Q ss_pred CchhhH
Q 040945 2 GMGVKQ 7 (125)
Q Consensus 2 ~~~~~~ 7 (125)
|+|.||
T Consensus 6 g~NLKq 11 (31)
T d1x62a1 6 GTNLKQ 11 (31)
T ss_dssp CCCHHH
T ss_pred ccChhh
Confidence 455554
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.22 E-value=1.5e+02 Score=12.08 Aligned_cols=8 Identities=13% Similarity=-0.325 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 040945 21 VQCVQVGI 28 (125)
Q Consensus 21 ~~~~wg~~ 28 (125)
..+-|+..
T Consensus 11 vvftwsia 18 (27)
T d2e74h1 11 VVFTWSIA 18 (27)
T ss_dssp HHHHHHHH
T ss_pred HHhhheee
Confidence 33444443
No 6
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.11 E-value=1.1e+02 Score=16.24 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.8
Q ss_pred chhhHHhh
Q 040945 3 MGVKQLVV 10 (125)
Q Consensus 3 ~~~~~~~~ 10 (125)
||++|+.+
T Consensus 1 MtK~dli~ 8 (90)
T d1huua_ 1 MNKTELIN 8 (90)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 55555333
No 7
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=4.75 E-value=1.2e+02 Score=16.25 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=4.3
Q ss_pred chhhHHhhh
Q 040945 3 MGVKQLVVG 11 (125)
Q Consensus 3 ~~~~~~~~~ 11 (125)
||++|+.++
T Consensus 1 MtK~eli~~ 9 (94)
T d1owfb_ 1 MTKSELIER 9 (94)
T ss_dssp CBHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555554433
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.73 E-value=2.2e+02 Score=13.36 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 040945 42 PLILAVYADAIASLILLPLSFFLNR 66 (125)
Q Consensus 42 p~~~~~~r~~~a~~~l~~~~~~~~~ 66 (125)
|..+-.+-.+.+++++.=+.+..++
T Consensus 2 P~Rv~gll~F~~~v~laQi~LVLKK 26 (45)
T d1q90a3 2 PARIQGLLVFFSFVLLTQVLLVLKK 26 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555544444333
No 9
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=4.59 E-value=1.3e+02 Score=16.00 Aligned_cols=6 Identities=50% Similarity=0.545 Sum_probs=2.8
Q ss_pred chhhHH
Q 040945 3 MGVKQL 8 (125)
Q Consensus 3 ~~~~~~ 8 (125)
||++|+
T Consensus 1 M~K~el 6 (90)
T d1mula_ 1 MNKTQL 6 (90)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 454443
No 10
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=4.35 E-value=1.4e+02 Score=15.82 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=0.0
Q ss_pred chhhHHhhhh
Q 040945 3 MGVKQLVVGL 12 (125)
Q Consensus 3 ~~~~~~~~~~ 12 (125)
||++++.+++
T Consensus 1 M~K~eLi~~i 10 (90)
T d2o97b1 1 MNKSQLIDKI 10 (90)
T ss_dssp CBHHHHHHHH
T ss_pred CCHHHHHHHH
Done!