BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040947
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8Y|A Chain A, Solution Structure Of The Lim Domain Of Epithelial
Protein Lost In Neoplasm
Length = 91
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 8 DKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67
+ C C KTVY ++ L +H SCF+CS+C L + Y+S+ G +YCKPHF QLFK
Sbjct: 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75
Query: 68 ESGNFSKNFQTGKNPSS 84
GN+ + F +G PSS
Sbjct: 76 SKGNYDEGFGSG--PSS 90
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 102 TQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQL 161
++ C C+KTVYP+E++ FH +CFRC++ L+ +YA+L G +YCK HF QL
Sbjct: 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73
Query: 162 FMEKGNY 168
F KGNY
Sbjct: 74 FKSKGNY 80
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQ 64
G KC C K VY + + EG +HKSCF C CK L + + +YCK + +
Sbjct: 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGK 64
Query: 65 ---------------LFKESG-NFSKNFQTGKN--PSSCSNQNRTPSKLSSLFSGTQDKC 106
L + G + ++ G++ P++ N +R K+ G D C
Sbjct: 65 KYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTN-PNASRMAQKV-----GGSDGC 118
Query: 107 AACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEK 165
C + VY EKV G +HK+CFRCA G L ++ A DG +YCK +A+ F K
Sbjct: 119 PRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 4 TGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFE 63
G D C C + VY + + G +HKSCF+C+ C +L + + DG +YCK
Sbjct: 112 VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCK---- 167
Query: 64 QLFKESGNFSKNF 76
G ++KNF
Sbjct: 168 ------GCYAKNF 174
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 89 NRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAAL 148
N SK + F G +KC+AC +VY EKV G +HK CFRCA G L ++
Sbjct: 23 NPNTSKFAQKFGGA-EKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEK 81
Query: 149 DGVLYCKHHFAQLFMEKG 166
+G +YCK +A+ F KG
Sbjct: 82 EGEIYCKGCYAKNFGPKG 99
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQ 64
G +KC AC +VY + + G P+HK+CF+C+ C +L + + +G +YCK + +
Sbjct: 34 GGAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
Query: 65 LFKESG 70
F G
Sbjct: 94 NFGPKG 99
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15 Minimized
Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 89 NRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAAL 148
N SK + F G +KC+ C +VY EKV G +HK CFRCA G L ++
Sbjct: 23 NPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEK 81
Query: 149 DGVLYCKHHFAQLFMEKG 166
+G +YCK +A+ F KG
Sbjct: 82 EGEIYCKGCYAKNFGPKG 99
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQ 64
G +KC C +VY + + G P+HK+CF+C+ C +L + + +G +YCK + +
Sbjct: 34 GGAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAK 93
Query: 65 LFKESG 70
F G
Sbjct: 94 NFGPKG 99
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%)
Query: 101 GTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQ 160
G D C C + VY EKV G +HK+CFRCA G L ++ A DG +YCK +A+
Sbjct: 6 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAK 65
Query: 161 LFMEK 165
F K
Sbjct: 66 NFGPK 70
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 4 TGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFE 63
G D C C + VY + + G +HKSCF+C+ C +L + + DG +YCK
Sbjct: 5 VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCK---- 60
Query: 64 QLFKESGNFSKNF 76
G ++KNF
Sbjct: 61 ------GCYAKNF 67
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of
MlpCRP3
Length = 58
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
KC C K+VY + + G P+HK+CF+C+ C +L +N + DG LYCK + + F
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%)
Query: 105 KCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162
KC C K+VY EKV G +HKTCFRCA G L ++ DG LYCK +A+ F
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNF 58
>pdb|2CU8|A Chain A, Solution Structure Of The Lim Domain Of Human
Cysteine-Rich Protein 2
Length = 76
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYC-KPHFEQLF 66
KC CDKTVY + +S G +HK C KC C TL ++ DG +C KP + LF
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 105 KCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYC-KHHFAQLF 162
KC C+KTVY EKV+ G +HK C +C LT +A DG +C K +A LF
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 4 TGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSM--DGVLYCKPH 61
G D C C + +YV++ L + G +H+SCF+C C+ TL Y DG YC H
Sbjct: 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQH 71
Query: 62 FEQ 64
Q
Sbjct: 72 LPQ 74
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 100 SGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYA--ALDGVLYCKHH 157
+G D CA C + +Y LE++ + G FH++CFRC L Y DG YC H
Sbjct: 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQH 71
Query: 158 FAQ 160
Q
Sbjct: 72 LPQ 74
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of MlpCRP3
Length = 60
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 105 KCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCK 155
KC ACEKTVY E++ G FHKTCF C L ++ AA + +YCK
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCK 53
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCK 59
KC AC+KTVY + + G +HK+CF C C+ L + ++ + +YCK
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCK 53
>pdb|1IML|A Chain A, Cysteine Rich Intestinal Protein, Nmr, 48 Structures
Length = 76
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCK-PHFEQLFK 67
KC CDK VY + ++ G +H+ C KC C TL ++ +G YC P + +F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 68 ESG 70
G
Sbjct: 62 PKG 64
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 105 KCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHH-FAQLFM 163
KC C+K VY E+VT G +H+ C +C G LT +A +G YC H ++ +F
Sbjct: 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61
Query: 164 EKG 166
KG
Sbjct: 62 PKG 64
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And Glycine-
Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 101 GTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQ 160
G +KC AC +TVY E+V +G FH+ CF C L ++ A D +YCK + +
Sbjct: 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGK 64
Query: 161 LFMEKG 166
+ KG
Sbjct: 65 KYGPKG 70
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 1 MAFTGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKP 60
M G +KC AC +TVY + + +G +H+ CF C C+ L + + D +YCK
Sbjct: 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKS 60
Query: 61 HFEQLFKESG 70
+ + + G
Sbjct: 61 CYGKKYGPKG 70
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 99 FSGTQDK-CAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKH 156
F G+ + C C+ P E+ V G+ +H+ CF CA P + +G YC+H
Sbjct: 6 FQGSANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEH 65
Query: 157 HFAQLF 162
F LF
Sbjct: 66 DFQMLF 71
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 1 MAFTGTLDK-CKACDKTVYVVD-MLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYC 58
+ F G+ + C+ C + +++ G YH+ CF C+ C + +G YC
Sbjct: 4 LYFQGSANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYC 63
Query: 59 KPHFEQLF 66
+ F+ LF
Sbjct: 64 EHDFQMLF 71
>pdb|2DAR|A Chain A, Solution Structure Of First Lim Domain Of Enigma-Like
Pdz And Lim Domains Protein
Length = 90
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 10 CKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
C C++ + +++L G +H F C+HCK T+ + G LYC+ +E+ F
Sbjct: 28 CAHCNQVIRGPFLVAL-GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83
>pdb|2CUQ|A Chain A, Solution Structure Of Second Lim Domain From Human
Skeletal Muscle Lim-Protein 2
Length = 80
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
+C C KT+ ++ P+H+ C C+ C+ L ++S D YC F +LF
Sbjct: 17 RCARCSKTL-TQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 105 KCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162
+CA C KT+ VT +H+ C C PL + + D YC F +LF
Sbjct: 17 RCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 40/155 (25%)
Query: 7 LDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
+ +C C++ + +L + +H SC KC+ C+ L +S G +YCK E F
Sbjct: 6 IPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRA-GSVYCK---EDFF 61
Query: 67 KESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGD-C 125
K G KC AC++ + P + V D
Sbjct: 62 KRFGT---------------------------------KCTACQQGIPPTQVVRKAQDFV 88
Query: 126 FHKTCFRCAHGGCPLTHSS--YAALDGVLYCKHHF 158
+H CF C L Y DG L CK +
Sbjct: 89 YHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDY 123
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 42/154 (27%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCK---GTLVMSNYSSMDGVLYCKPHFEQL 65
+C C + +L +H C KCS C+ G + S+Y+ G++ C+ + +L
Sbjct: 5 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRL 63
Query: 66 FKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTM--EG 123
F SG C+AC +++ P ++ M +G
Sbjct: 64 FGNSG----------------------------------ACSACGQSI-PASELVMRAQG 88
Query: 124 DCFHKTCFRCAHGGCPLT-HSSYAALDGVLYCKH 156
+ +H CF C+ L + ++G L+C+H
Sbjct: 89 NVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 122
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 MAFTGTLDKCKACDKTVYVVDM-LSLEGMPYHKSCFKCSHCKGTLVMSN-YSSMDGVLYC 58
+ G C AC +++ ++ + +G YH CF CS C+ LV + + ++G L+C
Sbjct: 61 IRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 120
Query: 59 K 59
+
Sbjct: 121 E 121
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 42/154 (27%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCK---GTLVMSNYSSMDGVLYCKPHFEQL 65
+C C + +L +H C KCS C+ G + S+Y+ G++ C+ + +L
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRL 65
Query: 66 FKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTM--EG 123
F SG C+AC +++ P ++ M +G
Sbjct: 66 FGNSG----------------------------------ACSACGQSI-PASELVMRAQG 90
Query: 124 DCFHKTCFRCAHGGCPLT-HSSYAALDGVLYCKH 156
+ +H CF C+ L + ++G L+C+H
Sbjct: 91 NVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 124
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 MAFTGTLDKCKACDKTVYVVDM-LSLEGMPYHKSCFKCSHCKGTLVMSN-YSSMDGVLYC 58
+ G C AC +++ ++ + +G YH CF CS C+ LV + + ++G L+C
Sbjct: 63 IRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC 122
Query: 59 K 59
+
Sbjct: 123 E 123
>pdb|1X63|A Chain A, Solution Structure Of The Second Lim Domain Of Skeletal
Muscle Lim Protein 1
Length = 82
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 9 KCKACDKTVYVVDM-LSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
KCK C K + D + +G +HK CF CS+CK + ++ YC E F
Sbjct: 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKF 75
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 106 CAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162
C C+ P EK V G+ +H+ CF CA + +G YC+H F LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 22 MLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
+++ G YH+ CF C+ C + +G YC+ F+ LF
Sbjct: 27 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 10 CKACDKTV-YVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
C C + + + +L+L+ +H SCFKC C ++ Y S DGV YC+ + F
Sbjct: 18 CAGCKEEIKHGQSLLALD-KQWHVSCFKCQTCS-VILTGEYISKDGVPYCESDYHAQF 73
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 106 CAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162
CA C++ + + + +H +CF+C LT Y + DGV YC+ + F
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT-GEYISKDGVPYCESDYHAQF 73
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 33.5 bits (75), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 106 CAACEKTVYPLEKVT-MEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162
C C+ P EK+ G+ +H+ CF CA + +G YC+H F LF
Sbjct: 14 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 27 GMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
G YH+ CF C+ C + +G YC+ F+ LF
Sbjct: 32 GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 106 CAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162
C C+ P EK V G+ +H+ CF CA + +G YC+H F LF
Sbjct: 10 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 22 MLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
+++ G YH+ CF C+ C + +G YC+ F+ LF
Sbjct: 23 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 67
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 4 TGTLDKCKACDKTVYVVDMLSLEGMP--YHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPH 61
T + C CD+ +++D L+ + +H C KCS C L +S + V YCK
Sbjct: 3 TPEIPMCAGCDQ--HILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESV-YCKDD 59
Query: 62 FEQLFKESGNFSKNFQTGKNPS 83
F FK G Q G P+
Sbjct: 60 F---FKRFGTKCAACQLGIPPT 78
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 4 TGTLDKCKACDKTVYVVDMLSLEGMP--YHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPH 61
T + C CD+ +++D L+ + +H C KCS C L +S + V YCK
Sbjct: 57 TPEIPMCAGCDQ--HILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESV-YCKDD 113
Query: 62 FEQLFKESGNFSKNFQTGKNPS 83
F FK G Q G P+
Sbjct: 114 F---FKRFGTKCAACQLGIPPT 132
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 9 KCKACDKTVYVVDMLS-LEGMPYHKSCFKCSHCKGTLVMSN--YSSMDGVLYCKPHFE 63
KC AC + ++ + YH CF C CK L + Y D L CK +E
Sbjct: 121 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
>pdb|2D8Z|A Chain A, Solution Structure Of The Third Lim Domain Of Four And A
Half Lim Domains Protein 2 (Fhl-2)
Length = 70
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 10 CKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
C C K + + E P+HK CF C+ C+ L +++ D YC F L+
Sbjct: 8 CVQCKKPITTGGVTYRE-QPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 9 KCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQ 64
KC C++ V + + LS +H CF C C + ++ +DG +C+ H+
Sbjct: 17 KCGGCNRPV-LENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHH 71
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 105 KCAACEKTVYPLEKVTMEGD-CFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHF 158
KC C + V LE D +H CF C + S+ LDG +C+ H+
Sbjct: 17 KCGGCNRPV--LENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 66
Score = 31.2 bits (69), Expect = 0.38, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 10 CKACDKTV--YVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
C AC + + VV+ + G +H F C+ C+ + + G+ YC+ H+ QLF
Sbjct: 8 CGACRRPIEGRVVNAM---GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 106 CAACEKTVYPLEK--VTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162
C AC + P+E V G +H F CA P + G+ YC+ H+ QLF
Sbjct: 8 CGACRR---PIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 63
>pdb|1X4K|A Chain A, Solution Structure Of Lim Domain In Lim-Protein 3
Length = 72
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 10 CKACDKTVYV-VDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQ 64
C+ C KT+ + +G +H++CF C C+ + ++ D +C P +E+
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 106 CAACEKTVYP-LEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYC 154
C C+KT+ P K+ +G +H+TCF C P+ S+ D +C
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFC 57
>pdb|1WYH|A Chain A, Solution Structure Of The Lim Domain From Human Skeletal
Muscle Lim-Protein 2
Length = 72
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 23 LSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66
L G +H+ CF CS C+ L ++ G YC P +E F
Sbjct: 22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65
>pdb|1ZFO|A Chain A, Amino-Terminal Lim-Domain Peptide Of Lasp-1, Nmr
Length = 31
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 106 CAACEKTVYPLEKVTMEGDCFHKTCF 131
CA C K VYP EKV +HK CF
Sbjct: 6 CARCGKIVYPTEKVNCLDKFWHKACF 31
>pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 10 CKACDKTVYVVDM-LSLEGMPYHKSCFKCSHCK 41
C +CDK + +M + ++ YH CFKC+ C+
Sbjct: 13 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 45
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 106 CAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYC 154
C C K + K V + +H TCFRCA PL + ++ A D + C
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILC 57
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 3 FTGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHF 62
+ TL+KC C + + + +L G YH CF C C + +DG+ +
Sbjct: 11 YVATLEKCATCSQPI-LDRILRAMGKAYHPGCFTCVVC--------HRGLDGIPFTVDAT 61
Query: 63 EQLFKESGNFSKNFQTGKNPSS 84
Q+ +F + F +G PSS
Sbjct: 62 SQIHCIE-DFHRKFASG--PSS 80
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 10 CKACDKTVYVVDM-LSLEGMPYHKSCFKCSHC-KGTLVMSNYSSMDGVLYCKPHFEQLFK 67
C +CDK + +M + ++ YH CFKC+ C K V Y ++ + C+ + K
Sbjct: 69 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128
Query: 68 ESG 70
+G
Sbjct: 129 ING 131
>pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 10 CKACDKTVYVVDM-LSLEGMPYHKSCFKCSHCK 41
C +CDK + +M + ++ YH CFKC+ C+
Sbjct: 11 CASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 43
>pdb|2D36|A Chain A, The Crystal Structure Of Flavin Reductase Hpac
pdb|2D37|A Chain A, The Crystal Structure Of Flavin Reductase Hpac Complexed
With Nad+
pdb|2D38|A Chain A, The Crystal Structure Of Flavin Reductase Hpac Complexed
With Nadp+
Length = 176
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 126 FHKTCFRCAHGGCPLTHSSYAALDGVLY 153
F + ++ GGCP+ + SYA ++ LY
Sbjct: 108 FREIKYKEGIGGCPILYDSYAYIEAKLY 135
>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s]
Ferredoxin, Nmr, 18 Structures
Length = 96
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 13 CDKTVYVVDMLSLEG--MPYHKSCFKCSHCKGTLVMSNYSSMD 53
CD VYV+D EG +PY CS C G +V + D
Sbjct: 18 CDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSD 60
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 9 KCKACDKTVYVVDMLSLEGMP--YHKSCFKCSHCK---GTLVMSNYSSMDGVLYCKPHFE 63
+C C + D L M +H C KCS C+ G + S+Y+ G++ C+ +
Sbjct: 7 RCAGCGGKI--ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYI 63
Query: 64 QLF 66
+LF
Sbjct: 64 RLF 66
>pdb|1X64|A Chain A, Solution Structure Of The Lim Domain Of Alpha-Actinin-2
Associated Lim Protein
Length = 89
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 4 TGTLDKCKACDK--TVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPH 61
G+ + CDK + V ++ H CF C+ C L Y ++G LYC+ H
Sbjct: 19 AGSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETH 78
>pdb|2COR|A Chain A, Solution Structure Of The Third Lim Domain Of
Particularly Interesting New Cys-His Protein
Length = 79
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 13 CDKTVYVVDM--LSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKP 60
C K ++D L + PYH F C++C G + ++ + G LYC P
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANC-GKELTADARELKGELYCLP 66
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 9 KCKACDKTVYVVDMLSLEGMP--YHKSCFKCSHCK---GTLVMSNYSSMDGVLYCKPHFE 63
+C C + D L M +H C KCS C+ G + S+Y+ G++ C+ +
Sbjct: 63 RCAGCGGKI--ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYI 119
Query: 64 QLF 66
+LF
Sbjct: 120 RLF 122
>pdb|2CUR|A Chain A, Solution Structure Of Skeletal Muscle Lim-Protein 1
Length = 69
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 10 CKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYC 58
C C+K + ++ + P+H CF C C L +++++ YC
Sbjct: 8 CVKCNKAI-TSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYC 55
>pdb|3CTM|A Chain A, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|B Chain B, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|C Chain C, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|D Chain D, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|E Chain E, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|F Chain F, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|G Chain G, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
pdb|3CTM|H Chain H, Crystal Structure Of A Carbonyl Reductase From Candida
Parapsilosis With Anti-Prelog Stereo-Specificity
Length = 279
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 148 LDGVLYCKHHFAQLFMEKGNYSHVL 172
L+GV YC H+ ++F + G S ++
Sbjct: 145 LNGVYYCSHNIGKIFKKNGKGSLII 169
>pdb|2EHE|A Chain A, Solution Structure Of The First Lim Domain From Human
Four And A Half Lim Domains Protein 3
Length = 82
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 23 LSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCK 59
L E +H+ CF+C C+ +L ++ D L C
Sbjct: 32 LFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCN 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,517,131
Number of Sequences: 62578
Number of extensions: 252876
Number of successful extensions: 565
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 105
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)