Query 040947
Match_columns 210
No_of_seqs 240 out of 1490
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 21:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 1.2E-33 4.1E-38 226.4 12.4 170 1-171 1-184 (192)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 1.1E-32 3.8E-37 207.7 9.2 124 7-166 2-131 (131)
3 2xqn_T Testin, TESS; metal-bin 100.0 6.4E-32 2.2E-36 202.3 8.8 122 6-163 2-126 (126)
4 1rut_X Flinc4, fusion protein 100.0 1.8E-31 6.1E-36 213.1 7.0 127 6-168 4-136 (188)
5 2rgt_A Fusion of LIM/homeobox 100.0 1.1E-29 3.6E-34 199.5 10.9 125 5-166 4-131 (169)
6 2jtn_A LIM domain-binding prot 100.0 3.5E-29 1.2E-33 198.8 10.7 122 4-162 57-181 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 6.8E-27 2.3E-31 168.3 6.7 97 5-137 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 7.6E-25 2.6E-29 163.1 3.7 114 5-168 3-120 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 2E-22 6.7E-27 148.3 6.4 109 5-168 1-112 (114)
10 1x3h_A Leupaxin; paxillin fami 99.8 2.5E-21 8.5E-26 133.4 5.5 79 53-168 1-79 (80)
11 2cuq_A Four and A half LIM dom 99.8 2E-21 6.9E-26 133.9 5.0 78 53-167 1-78 (80)
12 1x63_A Skeletal muscle LIM-pro 99.8 3.2E-21 1.1E-25 133.4 5.4 80 53-168 1-81 (82)
13 2ehe_A Four and A half LIM dom 99.8 1.4E-21 4.9E-26 135.3 2.7 80 53-168 1-81 (82)
14 2dlo_A Thyroid receptor-intera 99.8 1.5E-20 5E-25 129.9 5.6 78 53-168 2-80 (81)
15 1a7i_A QCRP2 (LIM1); LIM domai 99.8 3.6E-20 1.2E-24 127.9 3.7 67 1-67 1-67 (81)
16 2egq_A FHL1 protein; LIM domai 99.8 7.1E-20 2.4E-24 125.1 4.1 73 53-161 1-77 (77)
17 1x6a_A LIMK-2, LIM domain kina 99.8 1E-19 3.5E-24 125.6 4.6 78 53-167 1-80 (81)
18 2d8y_A Eplin protein; LIM doma 99.8 7.4E-19 2.5E-23 124.0 8.1 76 103-178 15-90 (91)
19 2cu8_A Cysteine-rich protein 2 99.7 1.7E-18 5.9E-23 118.0 6.1 69 1-69 3-72 (76)
20 2cu8_A Cysteine-rich protein 2 99.7 3E-18 1E-22 116.8 6.6 70 99-168 5-75 (76)
21 1iml_A CRIP, cysteine rich int 99.7 3E-18 1E-22 116.8 5.3 60 8-67 1-61 (76)
22 1v6g_A Actin binding LIM prote 99.7 3.7E-18 1.3E-22 117.8 4.5 76 54-166 2-78 (81)
23 2dj7_A Actin-binding LIM prote 99.7 9.9E-18 3.4E-22 115.6 6.3 65 102-167 14-78 (80)
24 1a7i_A QCRP2 (LIM1); LIM domai 99.7 4.7E-18 1.6E-22 117.2 4.4 66 102-167 6-71 (81)
25 2d8y_A Eplin protein; LIM doma 99.7 1.8E-17 6E-22 116.9 6.4 73 6-78 14-86 (91)
26 1nyp_A Pinch protein; LIM doma 99.7 1.3E-17 4.3E-22 110.6 5.2 61 104-165 6-66 (66)
27 2dar_A PDZ and LIM domain prot 99.7 4.1E-17 1.4E-21 114.7 7.7 65 103-168 25-89 (90)
28 2cur_A Skeletal muscle LIM-pro 99.7 3E-17 1E-21 109.7 6.5 63 104-167 6-68 (69)
29 2d8z_A Four and A half LIM dom 99.7 3.6E-17 1.2E-21 109.5 6.4 64 104-168 6-69 (70)
30 2dj7_A Actin-binding LIM prote 99.7 2.5E-17 8.6E-22 113.5 5.7 63 5-68 13-75 (80)
31 1iml_A CRIP, cysteine rich int 99.7 3E-17 1E-21 111.8 5.8 67 104-170 1-68 (76)
32 1x68_A FHL5 protein; four-and- 99.7 1.5E-17 5.1E-22 113.3 4.0 67 104-170 6-75 (76)
33 1wyh_A SLIM 2, skeletal muscle 99.7 3.7E-17 1.3E-21 110.0 5.9 65 104-168 6-71 (72)
34 1x4k_A Skeletal muscle LIM-pro 99.7 3.8E-17 1.3E-21 110.0 5.9 65 104-168 6-71 (72)
35 2d8x_A Protein pinch; LIM doma 99.7 6.8E-17 2.3E-21 108.3 6.7 63 103-166 5-67 (70)
36 2cur_A Skeletal muscle LIM-pro 99.7 3.6E-17 1.2E-21 109.3 5.2 62 5-67 3-64 (69)
37 2d8z_A Four and A half LIM dom 99.7 4.3E-17 1.5E-21 109.2 5.4 63 5-68 3-65 (70)
38 1x64_A Alpha-actinin-2 associa 99.7 1.2E-16 4E-21 112.2 7.8 65 102-167 24-88 (89)
39 1x62_A C-terminal LIM domain p 99.7 4.2E-17 1.4E-21 112.0 5.3 64 103-167 15-78 (79)
40 1x4l_A Skeletal muscle LIM-pro 99.7 5.5E-17 1.9E-21 109.3 5.6 63 104-166 6-71 (72)
41 1nyp_A Pinch protein; LIM doma 99.7 3.7E-17 1.3E-21 108.3 4.2 62 6-68 4-65 (66)
42 1g47_A Pinch protein; LIM doma 99.7 6.8E-17 2.3E-21 110.1 5.7 64 104-167 12-76 (77)
43 1g47_A Pinch protein; LIM doma 99.7 4.5E-17 1.5E-21 111.0 4.7 68 1-68 5-73 (77)
44 1j2o_A FLIN2, fusion of rhombo 99.7 8.4E-17 2.9E-21 118.1 6.3 68 102-169 2-71 (114)
45 2dar_A PDZ and LIM domain prot 99.7 7E-17 2.4E-21 113.5 5.6 64 5-69 23-86 (90)
46 1x68_A FHL5 protein; four-and- 99.7 3.4E-17 1.2E-21 111.5 3.6 62 6-67 4-68 (76)
47 1wyh_A SLIM 2, skeletal muscle 99.7 8.1E-17 2.8E-21 108.3 5.3 63 6-68 4-67 (72)
48 2d8x_A Protein pinch; LIM doma 99.7 9.4E-17 3.2E-21 107.5 5.5 63 5-68 3-65 (70)
49 1x4k_A Skeletal muscle LIM-pro 99.6 1.1E-16 3.8E-21 107.6 5.3 63 6-68 4-67 (72)
50 1x4l_A Skeletal muscle LIM-pro 99.6 1E-16 3.4E-21 108.0 4.6 64 5-68 3-69 (72)
51 1x62_A C-terminal LIM domain p 99.6 5E-17 1.7E-21 111.6 2.9 65 5-70 13-77 (79)
52 1x61_A Thyroid receptor intera 99.6 2E-16 6.7E-21 106.5 5.5 63 5-67 3-66 (72)
53 1x64_A Alpha-actinin-2 associa 99.6 1.6E-16 5.5E-21 111.5 5.3 65 5-70 23-87 (89)
54 2cor_A Pinch protein; LIM doma 99.6 4.5E-16 1.5E-20 106.9 6.3 62 104-167 16-77 (79)
55 2co8_A NEDD9 interacting prote 99.6 2E-16 6.8E-21 109.4 4.3 65 100-164 12-78 (82)
56 2co8_A NEDD9 interacting prote 99.6 1.2E-16 4.2E-21 110.5 3.2 64 4-67 12-77 (82)
57 1x63_A Skeletal muscle LIM-pro 99.6 4.7E-16 1.6E-20 107.2 5.9 65 6-70 14-79 (82)
58 1x3h_A Leupaxin; paxillin fami 99.6 4.2E-16 1.5E-20 107.0 5.5 61 6-67 14-74 (80)
59 2cup_A Skeletal muscle LIM-pro 99.6 5.3E-16 1.8E-20 111.0 6.2 70 104-173 6-76 (101)
60 2dlo_A Thyroid receptor-intera 99.6 4.6E-16 1.6E-20 107.1 5.5 62 5-67 13-75 (81)
61 1x61_A Thyroid receptor intera 99.6 5.8E-16 2E-20 104.2 5.7 61 104-164 6-67 (72)
62 2l3k_A Rhombotin-2, linker, LI 99.6 2.5E-16 8.4E-21 117.1 3.9 70 104-173 9-80 (123)
63 3f6q_B LIM and senescent cell 99.6 5.6E-16 1.9E-20 103.9 5.3 60 104-163 12-72 (72)
64 1wig_A KIAA1808 protein; LIM d 99.6 3.9E-16 1.3E-20 105.6 4.5 62 104-166 6-68 (73)
65 2cuq_A Four and A half LIM dom 99.6 5.9E-16 2E-20 106.2 5.2 62 6-68 14-75 (80)
66 2xqn_T Testin, TESS; metal-bin 99.6 8E-16 2.7E-20 114.5 6.3 68 104-171 4-71 (126)
67 1wig_A KIAA1808 protein; LIM d 99.6 6.2E-16 2.1E-20 104.6 4.7 61 6-67 4-65 (73)
68 1m3v_A FLIN4, fusion of the LI 99.6 7.6E-16 2.6E-20 114.2 5.3 67 104-170 6-76 (122)
69 2ehe_A Four and A half LIM dom 99.6 5.1E-16 1.8E-20 107.1 4.0 63 6-68 14-77 (82)
70 1b8t_A Protein (CRP1); LIM dom 99.6 6.9E-16 2.4E-20 123.0 5.1 62 6-67 114-175 (192)
71 2jtn_A LIM domain-binding prot 99.6 1.2E-15 4.1E-20 120.6 6.4 67 104-171 61-127 (182)
72 2cor_A Pinch protein; LIM doma 99.6 8.6E-16 2.9E-20 105.5 4.7 62 5-68 13-74 (79)
73 3f6q_B LIM and senescent cell 99.6 8.5E-16 2.9E-20 103.0 4.3 62 6-67 10-72 (72)
74 2l4z_A DNA endonuclease RBBP8, 99.6 1E-15 3.6E-20 113.8 4.5 61 7-67 61-123 (123)
75 2l4z_A DNA endonuclease RBBP8, 99.6 1.5E-15 5.1E-20 112.9 4.9 61 103-163 61-123 (123)
76 2iyb_E Testin, TESS, TES; LIM 99.6 2.8E-15 9.5E-20 99.0 5.0 58 104-161 3-64 (65)
77 2iyb_E Testin, TESS, TES; LIM 99.5 2.4E-15 8.2E-20 99.3 3.9 59 7-65 2-64 (65)
78 2egq_A FHL1 protein; LIM domai 99.5 4.2E-15 1.5E-19 101.2 4.8 60 6-65 14-77 (77)
79 2xjy_A Rhombotin-2; oncoprotei 99.5 9.1E-15 3.1E-19 109.4 6.4 67 104-170 3-73 (131)
80 2l3k_A Rhombotin-2, linker, LI 99.5 1.2E-14 3.9E-19 108.0 5.0 66 7-72 8-75 (123)
81 1x6a_A LIMK-2, LIM domain kina 99.5 1.6E-14 5.4E-19 99.3 5.1 61 6-67 14-76 (81)
82 2rgt_A Fusion of LIM/homeobox 99.5 2.3E-14 7.8E-19 111.9 6.3 67 104-171 7-73 (169)
83 1rut_X Flinc4, fusion protein 99.4 5.7E-14 1.9E-18 111.5 4.5 67 104-170 6-76 (188)
84 1v6g_A Actin binding LIM prote 99.4 1.4E-13 4.8E-18 94.6 2.9 61 6-67 14-75 (81)
85 1zfo_A LAsp-1; LIM domain, zin 98.4 6.1E-08 2.1E-12 54.2 1.3 28 104-131 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.4 8.5E-08 2.9E-12 53.6 1.0 29 7-35 3-31 (31)
87 4ap4_A E3 ubiquitin ligase RNF 88.7 0.17 5.8E-06 36.2 1.7 92 35-163 8-111 (133)
88 2ct0_A Non-SMC element 1 homol 85.4 0.27 9.2E-06 32.4 1.1 34 3-36 11-44 (74)
89 1t1h_A Gspef-atpub14, armadill 85.0 1 3.5E-05 29.1 3.8 35 32-67 6-40 (78)
90 2ct0_A Non-SMC element 1 homol 83.7 0.89 3E-05 29.8 3.1 33 99-131 11-43 (74)
91 2djb_A Polycomb group ring fin 83.2 1 3.5E-05 28.6 3.2 34 34-67 15-48 (72)
92 2ysm_A Myeloid/lymphoid or mix 82.7 2 6.9E-05 30.0 4.8 95 6-160 6-104 (111)
93 4ap4_A E3 ubiquitin ligase RNF 82.5 1 3.5E-05 31.9 3.3 32 5-36 5-42 (133)
94 1jjd_A Metallothionein, SMTA; 81.7 1.2 4.1E-05 27.5 2.8 28 133-160 10-38 (55)
95 2ecy_A TNF receptor-associated 78.6 1.2 4.3E-05 27.7 2.3 33 34-67 15-47 (66)
96 2yur_A Retinoblastoma-binding 77.5 2.2 7.4E-05 27.3 3.3 33 34-67 15-48 (74)
97 3lrq_A E3 ubiquitin-protein li 76.9 2 6.9E-05 29.3 3.2 33 35-67 23-55 (100)
98 4gne_A Histone-lysine N-methyl 76.4 4.2 0.00014 28.5 4.8 41 7-61 15-59 (107)
99 2y43_A E3 ubiquitin-protein li 75.3 2.5 8.5E-05 28.6 3.3 34 34-67 22-55 (99)
100 2gvi_A Conserved hypothetical 75.2 1.1 3.7E-05 35.3 1.5 30 131-160 173-202 (204)
101 1g25_A CDK-activating kinase a 74.8 2.4 8.3E-05 26.2 2.9 33 35-67 4-40 (65)
102 2ysl_A Tripartite motif-contai 74.3 2.1 7.2E-05 27.0 2.6 33 34-67 20-52 (73)
103 1chc_A Equine herpes virus-1 r 74.0 3.7 0.00013 25.4 3.7 32 36-67 7-38 (68)
104 2csy_A Zinc finger protein 183 73.6 2.6 9E-05 27.3 3.0 32 35-67 16-47 (81)
105 3vk6_A E3 ubiquitin-protein li 73.4 1.9 6.7E-05 29.9 2.3 65 37-140 4-71 (101)
106 1jm7_B BARD1, BRCA1-associated 72.8 2.7 9.4E-05 29.4 3.1 34 34-67 22-55 (117)
107 2ect_A Ring finger protein 126 72.5 8 0.00027 24.6 5.2 38 104-141 16-63 (78)
108 3ztg_A E3 ubiquitin-protein li 72.3 3 0.0001 27.7 3.0 34 33-67 12-46 (92)
109 2eqg_A Tumor necrosis factor, 72.3 2.5 8.4E-05 24.7 2.2 17 145-161 22-38 (49)
110 3hct_A TNF receptor-associated 71.0 3.1 0.00011 29.2 3.0 33 34-67 18-50 (118)
111 1jjd_A Metallothionein, SMTA; 70.9 2.3 8E-05 26.2 2.0 30 36-65 9-39 (55)
112 2ecw_A Tripartite motif-contai 70.5 4.6 0.00016 25.9 3.7 33 34-67 19-51 (85)
113 2kwj_A Zinc finger protein DPF 70.4 2.8 9.7E-05 29.6 2.7 48 105-161 60-109 (114)
114 2ecv_A Tripartite motif-contai 70.2 4.1 0.00014 26.1 3.4 33 34-67 19-51 (85)
115 2ckl_B Ubiquitin ligase protei 70.0 3.5 0.00012 30.7 3.3 34 34-67 54-87 (165)
116 2d8t_A Dactylidin, ring finger 69.6 3.8 0.00013 25.7 3.0 33 34-67 15-47 (71)
117 3hcs_A TNF receptor-associated 69.4 3.3 0.00011 31.0 3.0 33 34-67 18-50 (170)
118 4ayc_A E3 ubiquitin-protein li 69.1 3.6 0.00012 29.7 3.1 32 35-67 54-85 (138)
119 2kr4_A Ubiquitin conjugation f 68.8 4.4 0.00015 26.8 3.3 35 32-67 12-46 (85)
120 1rmd_A RAG1; V(D)J recombinati 67.9 4.3 0.00015 28.2 3.2 33 34-67 23-55 (116)
121 2ckl_A Polycomb group ring fin 67.4 3.7 0.00013 28.2 2.8 33 34-67 15-48 (108)
122 1x4j_A Ring finger protein 38; 67.1 4.7 0.00016 25.6 3.1 38 104-141 24-71 (75)
123 1wgm_A Ubiquitin conjugation f 66.5 5.8 0.0002 27.1 3.6 35 32-67 20-55 (98)
124 2xeu_A Ring finger protein 4; 66.4 2.2 7.5E-05 26.0 1.3 41 104-144 4-58 (64)
125 3nw0_A Non-structural maintena 66.0 2.6 8.9E-05 33.9 1.9 41 102-142 179-229 (238)
126 2kre_A Ubiquitin conjugation f 66.0 7.5 0.00026 26.6 4.1 36 31-67 26-61 (100)
127 2c2l_A CHIP, carboxy terminus 65.6 5.9 0.0002 31.6 4.0 37 30-67 204-240 (281)
128 3fl2_A E3 ubiquitin-protein li 65.6 4.9 0.00017 28.3 3.2 33 34-67 52-84 (124)
129 1jm7_A BRCA1, breast cancer ty 65.5 5.4 0.00018 27.3 3.3 32 35-67 22-53 (112)
130 1chc_A Equine herpes virus-1 r 64.0 3.5 0.00012 25.5 1.9 41 6-46 4-52 (68)
131 1weo_A Cellulose synthase, cat 63.9 31 0.0011 23.3 6.7 40 104-164 17-56 (93)
132 2ecn_A Ring finger protein 141 63.4 3.6 0.00012 25.7 1.9 32 34-67 15-46 (70)
133 2ecm_A Ring finger and CHY zin 61.9 7.8 0.00027 22.6 3.2 15 53-67 27-41 (55)
134 1z6u_A NP95-like ring finger p 61.2 6.4 0.00022 29.0 3.2 33 34-67 78-110 (150)
135 2kiz_A E3 ubiquitin-protein li 59.8 12 0.00041 23.0 3.9 38 104-141 15-62 (69)
136 3l11_A E3 ubiquitin-protein li 59.4 4.1 0.00014 28.3 1.8 31 35-66 16-46 (115)
137 2f42_A STIP1 homology and U-bo 59.4 7.4 0.00025 29.8 3.3 35 32-67 104-138 (179)
138 2gvi_A Conserved hypothetical 59.3 2.1 7.2E-05 33.5 0.2 31 34-64 172-202 (204)
139 3ng2_A RNF4, snurf, ring finge 59.2 3.2 0.00011 25.9 1.1 41 104-144 11-65 (71)
140 2ea6_A Ring finger protein 4; 57.9 3.1 0.00011 25.7 0.8 34 34-67 15-54 (69)
141 3knv_A TNF receptor-associated 56.5 4.3 0.00015 29.6 1.5 34 33-67 30-63 (141)
142 2ep4_A Ring finger protein 24; 54.9 13 0.00044 23.2 3.5 33 35-67 16-50 (74)
143 2ct2_A Tripartite motif protei 54.8 12 0.0004 24.2 3.3 33 35-67 16-51 (88)
144 1e4u_A Transcriptional repress 54.0 11 0.00038 24.5 3.1 33 35-67 12-47 (78)
145 1iym_A EL5; ring-H2 finger, ub 54.0 14 0.00047 21.5 3.3 15 53-67 27-41 (55)
146 3ql9_A Transcriptional regulat 53.1 9.9 0.00034 27.6 2.9 34 33-66 7-45 (129)
147 2ecg_A Baculoviral IAP repeat- 52.9 9.1 0.00031 24.3 2.5 30 35-65 26-56 (75)
148 2e5r_A Dystrobrevin alpha; ZZ 52.6 14 0.00049 23.1 3.3 37 123-161 6-45 (63)
149 2ecl_A Ring-box protein 2; RNF 51.4 4.3 0.00015 26.5 0.7 41 6-46 14-76 (81)
150 2dmj_A Poly (ADP-ribose) polym 51.2 6.4 0.00022 27.4 1.6 15 103-117 25-39 (106)
151 2egp_A Tripartite motif-contai 50.8 5.7 0.0002 25.2 1.2 32 35-67 13-44 (79)
152 1v9x_A Poly (ADP-ribose) polym 49.3 6.9 0.00024 27.7 1.5 29 104-132 21-60 (114)
153 2bay_A PRE-mRNA splicing facto 48.9 16 0.00056 22.4 3.2 33 34-67 3-36 (61)
154 1bor_A Transcription factor PM 47.6 8.2 0.00028 23.1 1.5 28 35-63 7-34 (56)
155 2l0b_A E3 ubiquitin-protein li 47.2 12 0.00039 24.8 2.4 37 104-140 41-87 (91)
156 2jrp_A Putative cytoplasmic pr 46.9 14 0.00047 24.6 2.6 11 8-18 3-13 (81)
157 2lbm_A Transcriptional regulat 46.3 18 0.0006 26.6 3.4 35 33-67 13-52 (142)
158 2d8v_A Zinc finger FYVE domain 45.8 10 0.00035 24.2 1.7 14 53-66 26-39 (67)
159 1uw0_A DNA ligase III; DNA rep 45.5 8 0.00027 27.4 1.4 14 104-117 16-29 (117)
160 2cs3_A Protein C14ORF4, MY039 44.4 7.4 0.00025 25.9 1.0 31 35-65 16-49 (93)
161 3htk_C E3 SUMO-protein ligase 43.7 17 0.00057 29.7 3.2 36 32-67 179-214 (267)
162 2d8s_A Cellular modulator of i 42.8 20 0.00069 23.3 3.0 40 6-45 14-69 (80)
163 4ic3_A E3 ubiquitin-protein li 41.1 14 0.00047 23.5 1.9 30 35-65 25-55 (74)
164 3od8_A Poly [ADP-ribose] polym 40.1 9.3 0.00032 27.2 1.0 14 104-117 39-52 (116)
165 2ysj_A Tripartite motif-contai 40.0 20 0.0007 21.5 2.6 33 34-67 20-52 (63)
166 3odc_A Poly [ADP-ribose] polym 39.7 9.9 0.00034 26.8 1.1 14 104-117 20-33 (111)
167 2yu4_A E3 SUMO-protein ligase 39.2 20 0.00069 23.8 2.6 34 33-67 6-40 (94)
168 3j21_V 50S ribosomal protein L 36.2 17 0.00057 23.2 1.6 25 7-31 4-31 (66)
169 1wen_A Inhibitor of growth fam 35.6 21 0.0007 22.8 2.1 44 7-63 16-64 (71)
170 2vpb_A Hpygo1, pygopus homolog 35.3 12 0.00041 23.6 0.9 48 104-158 9-64 (65)
171 3vk6_A E3 ubiquitin-protein li 35.2 10 0.00036 26.2 0.6 51 105-155 3-62 (101)
172 1vq8_U 50S ribosomal protein L 35.2 16 0.00056 23.2 1.5 24 8-31 4-30 (66)
173 2cs2_A Poly [ADP-ribose] polym 33.8 16 0.00056 26.5 1.5 29 104-132 28-69 (134)
174 2ea5_A Cell growth regulator w 33.4 37 0.0013 21.1 3.0 30 35-65 16-46 (68)
175 2k16_A Transcription initiatio 33.3 15 0.00052 23.4 1.1 50 104-162 19-70 (75)
176 3nw0_A Non-structural maintena 33.3 9.4 0.00032 30.5 0.1 16 3-18 176-191 (238)
177 2cs3_A Protein C14ORF4, MY039 33.0 38 0.0013 22.5 3.0 49 103-156 15-63 (93)
178 1ovx_A ATP-dependent CLP prote 31.7 53 0.0018 20.9 3.5 30 131-160 19-49 (67)
179 2vnf_A ING 4, P29ING4, inhibit 31.6 40 0.0014 20.6 2.9 44 104-160 11-59 (60)
180 3d00_A Tungsten formylmethanof 31.0 10 0.00035 29.3 -0.0 27 129-161 162-188 (191)
181 2ds5_A CLPX, ATP-dependent CLP 30.9 59 0.002 19.4 3.4 30 131-160 12-42 (51)
182 2ecj_A Tripartite motif-contai 30.8 34 0.0012 19.8 2.4 32 35-67 16-47 (58)
183 1v87_A Deltex protein 2; ring- 29.5 21 0.00071 24.4 1.4 11 104-114 26-36 (114)
184 3c6w_A P28ING5, inhibitor of g 29.2 40 0.0014 20.5 2.6 44 104-160 10-58 (59)
185 2e6r_A Jumonji/ARID domain-con 29.2 1.3E+02 0.0043 20.0 5.5 51 104-163 17-69 (92)
186 2jne_A Hypothetical protein YF 27.5 11 0.00039 25.9 -0.3 39 8-65 33-71 (101)
187 2dip_A Zinc finger SWIM domain 26.9 54 0.0018 22.3 3.1 37 125-162 27-66 (98)
188 1wfh_A Zinc finger (AN1-like) 25.0 48 0.0016 20.9 2.3 26 36-61 17-42 (64)
189 2yho_A E3 ubiquitin-protein li 24.9 38 0.0013 21.7 2.0 29 36-65 20-49 (79)
190 1wg2_A Zinc finger (AN1-like) 23.9 50 0.0017 20.8 2.2 24 37-60 18-41 (64)
191 2puy_A PHD finger protein 21A; 23.2 98 0.0034 18.5 3.6 48 104-163 6-55 (60)
192 1wev_A Riken cDNA 1110020M19; 23.0 38 0.0013 22.4 1.7 53 104-161 17-73 (88)
193 1znf_A 31ST zinc finger from X 22.0 40 0.0014 15.3 1.3 12 131-142 2-13 (27)
194 2pv0_B DNA (cytosine-5)-methyl 21.2 1.5E+02 0.0053 25.3 5.5 16 151-166 115-130 (386)
195 2lo3_A SAGA-associated factor 21.0 30 0.001 19.9 0.7 12 8-19 18-29 (44)
196 1k82_A Formamidopyrimidine-DNA 20.8 38 0.0013 27.4 1.6 19 104-125 241-259 (268)
197 2zkr_u 60S ribosomal protein L 20.8 38 0.0013 25.3 1.5 24 8-31 4-30 (157)
198 2ku3_A Bromodomain-containing 20.6 87 0.003 19.8 3.0 47 104-161 17-67 (71)
199 4a17_T RPL24, 60S ribosomal pr 20.5 34 0.0012 25.6 1.1 26 7-32 5-33 (158)
200 3u6p_A Formamidopyrimidine-DNA 20.5 34 0.0012 27.8 1.2 18 104-124 246-263 (273)
201 4g9i_A Hydrogenase maturation 20.3 26 0.00089 32.9 0.5 33 7-44 106-138 (772)
202 3izc_Z 60S ribosomal protein R 20.2 36 0.0012 25.4 1.2 24 8-31 4-30 (155)
203 1wfp_A Zinc finger (AN1-like) 20.2 68 0.0023 20.8 2.4 26 36-61 27-52 (74)
204 1ard_A Yeast transcription fac 20.1 42 0.0014 15.4 1.1 12 131-142 3-14 (29)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=1.2e-33 Score=226.35 Aligned_cols=170 Identities=33% Similarity=0.614 Sum_probs=134.8
Q ss_pred CCCCCCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccCCC-CCCccCC
Q 040947 1 MAFTGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNF-SKNFQTG 79 (210)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~-~~~~~~~ 79 (210)
|+..++.++|..|+++|+.++.|.++|+.||++||+|..|+++|....|++++|++||+.||.++|++++.. ....+..
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~ 80 (192)
T 1b8t_A 1 MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTL 80 (192)
T ss_dssp CCCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccE
Confidence 888889999999999998888899999999999999999999999999999999999999999999987642 1111110
Q ss_pred CCC-------CCCCCCCCCC-----CCcccccCCCCCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeee
Q 040947 80 KNP-------SSCSNQNRTP-----SKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAA 147 (210)
Q Consensus 80 ~~~-------~~~~~~~~~~-----~~~~~~~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~ 147 (210)
..+ ..+......| +...+ ..++.++|++|+++|.+++.|.++++.||++||+|..|+++|..+.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQ-KVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred ecCCCcccccccccccccCCCCcCcccccc-ccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc
Confidence 000 0000000000 11111 1234578999999999888899999999999999999999999888999
Q ss_pred cCCeeecHhHHHhhhcCCCC-cccc
Q 040947 148 LDGVLYCKHHFAQLFMEKGN-YSHV 171 (210)
Q Consensus 148 ~dg~~yC~~c~~~~f~~k~~-~~~~ 171 (210)
.||++||+.||.++|++++. ++.+
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~~C~~~ 184 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGFGFGQG 184 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCCCCCCC
T ss_pred cCCEEeCHHHHHHhcCCcCCCCCCc
Confidence 99999999999999999997 4444
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.98 E-value=1.1e-32 Score=207.68 Aligned_cols=124 Identities=21% Similarity=0.486 Sum_probs=113.8
Q ss_pred CCCcccCCcceecceeEeeCCccccCCCcccccccCCCCC--CCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCCC
Q 040947 7 LDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVM--SNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPSS 84 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~ 84 (210)
.++|..|+++|.+.++|.++|+.||++||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~----------------- 64 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG----------------- 64 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------------
Confidence 5789999999996667999999999999999999999973 689999999999999999998
Q ss_pred CCCCCCCCCCcccccCCCCC--ccccccceeecCc-eeEecCccccccccccCCCCCcCC-CCCeeecCCeeecHhHHHh
Q 040947 85 CSNQNRTPSKLSSLFSGTQD--KCAACEKTVYPLE-KVTMEGDCFHKTCFRCAHGGCPLT-HSSYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~~--~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~~~l~-~~~f~~~dg~~yC~~c~~~ 160 (210)
+ +|.+|+++|.+.+ .|.++++.||++||+|..|+++|. +..|++.+|++||..||.+
T Consensus 65 -------------------~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~ 125 (131)
T 2xjy_A 65 -------------------QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 125 (131)
T ss_dssp -------------------CCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHH
T ss_pred -------------------CccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHH
Confidence 5 8999999998755 578999999999999999999995 6679999999999999999
Q ss_pred hhcCCC
Q 040947 161 LFMEKG 166 (210)
Q Consensus 161 ~f~~k~ 166 (210)
+|+++|
T Consensus 126 ~~~~~~ 131 (131)
T 2xjy_A 126 WTKING 131 (131)
T ss_dssp HHHHHC
T ss_pred HhhccC
Confidence 998764
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=6.4e-32 Score=202.29 Aligned_cols=122 Identities=20% Similarity=0.505 Sum_probs=113.7
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCCCC
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSC 85 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~ 85 (210)
.+++|.+|+++|+.+++|.++|+.||++||+|..|+++|.+..|++++|++||+.||.++|+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------------------ 63 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------------------ 63 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC------------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC------------------
Confidence 35899999999997788999999999999999999999999899999999999999999998
Q ss_pred CCCCCCCCCcccccCCCCCccccccceeecCc-eeEecCcccc--ccccccCCCCCcCCCCCeeecCCeeecHhHHHhhh
Q 040947 86 SNQNRTPSKLSSLFSGTQDKCAACEKTVYPLE-KVTMEGDCFH--KTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162 (210)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e-~v~~~g~~~H--~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f 162 (210)
++|++|+++|.+++ .|.++++.|| ++||+|..|+++|.+..|++.+|++||..+|.++|
T Consensus 64 ------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 64 ------------------VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp ------------------CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred ------------------ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 89999999999744 5899999999 99999999999999888999999999998888876
Q ss_pred c
Q 040947 163 M 163 (210)
Q Consensus 163 ~ 163 (210)
.
T Consensus 126 ~ 126 (126)
T 2xqn_T 126 S 126 (126)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=1.8e-31 Score=213.07 Aligned_cols=127 Identities=22% Similarity=0.572 Sum_probs=112.8
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCC--CCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCC
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVM--SNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPS 83 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 83 (210)
..++|..|+++|...++|.++++.||++||+|..|+++|.. ..|++++|++||+.||.++|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---------------- 67 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---------------- 67 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS----------------
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc----------------
Confidence 46899999999996667999999999999999999999985 689999999999999999998
Q ss_pred CCCCCCCCCCCcccccCCCCC--ccccccceeecCce-eEecCccccccccccCCCCCcCC-CCCeeecCCeeecHhHHH
Q 040947 84 SCSNQNRTPSKLSSLFSGTQD--KCAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLT-HSSYAALDGVLYCKHHFA 159 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~~--~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~-~~~f~~~dg~~yC~~c~~ 159 (210)
+ +|.+|+++|.+.+. |.++++.||++||+|..|+++|. +..|+..++++||+.||.
T Consensus 68 --------------------~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~ 127 (188)
T 1rut_X 68 --------------------NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRP 127 (188)
T ss_dssp --------------------CCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCC
T ss_pred --------------------cCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHH
Confidence 5 79999999997664 78999999999999999999996 567999999999999999
Q ss_pred hhhcCCCCc
Q 040947 160 QLFMEKGNY 168 (210)
Q Consensus 160 ~~f~~k~~~ 168 (210)
++|++++..
T Consensus 128 ~~~~~~~~~ 136 (188)
T 1rut_X 128 TALINGHLN 136 (188)
T ss_dssp TTTC-----
T ss_pred HHhcccccc
Confidence 999999964
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=1.1e-29 Score=199.54 Aligned_cols=125 Identities=26% Similarity=0.509 Sum_probs=109.8
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCCC
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPSS 84 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~ 84 (210)
.+.++|..|+++|+..++|.++|+.||++||+|..|+++|.+..| +++|++||+.||.++|+
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~----------------- 65 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG----------------- 65 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS-----------------
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccccc-----------------
Confidence 356899999999997667899999999999999999999998764 79999999999999998
Q ss_pred CCCCCCCCCCcccccCCCCCccccccceeecCce-eEecCccccccccccCCCCCcCC-CCCee-ecCCeeecHhHHHhh
Q 040947 85 CSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLT-HSSYA-ALDGVLYCKHHFAQL 161 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~-~~~f~-~~dg~~yC~~c~~~~ 161 (210)
++|.+|+++|.+.+. +.++++.||++||+|..|+++|. +..|+ ..||++||+.||.++
T Consensus 66 -------------------~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~ 126 (169)
T 2rgt_A 66 -------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 126 (169)
T ss_dssp -------------------CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHH
T ss_pred -------------------ccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHH
Confidence 899999999997665 58999999999999999999997 55565 468999999999999
Q ss_pred hcCCC
Q 040947 162 FMEKG 166 (210)
Q Consensus 162 f~~k~ 166 (210)
++...
T Consensus 127 ~~~~~ 131 (169)
T 2rgt_A 127 KQGGS 131 (169)
T ss_dssp HHCC-
T ss_pred hhccC
Confidence 87643
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=3.5e-29 Score=198.79 Aligned_cols=122 Identities=27% Similarity=0.535 Sum_probs=108.7
Q ss_pred CCCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCC
Q 040947 4 TGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPS 83 (210)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 83 (210)
....++|..|+++|+..+++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++|+
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---------------- 119 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---------------- 119 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS----------------
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccc----------------
Confidence 3456899999999997677899999999999999999999998765 79999999999999998
Q ss_pred CCCCCCCCCCCcccccCCCCCccccccceeecCce-eEecCccccccccccCCCCCcCC-CCCee-ecCCeeecHhHHHh
Q 040947 84 SCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLT-HSSYA-ALDGVLYCKHHFAQ 160 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~-~~~f~-~~dg~~yC~~c~~~ 160 (210)
++|..|+++|.+.+. +.+.++.||+.||+|..|+++|. +..|+ ..+|++||+.||.+
T Consensus 120 --------------------~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~ 179 (182)
T 2jtn_A 120 --------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179 (182)
T ss_dssp --------------------CCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHH
T ss_pred --------------------cccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHH
Confidence 899999999997665 58999999999999999999997 45565 46899999999987
Q ss_pred hh
Q 040947 161 LF 162 (210)
Q Consensus 161 ~f 162 (210)
+.
T Consensus 180 ~~ 181 (182)
T 2jtn_A 180 AK 181 (182)
T ss_dssp HT
T ss_pred hh
Confidence 53
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=6.8e-27 Score=168.33 Aligned_cols=97 Identities=23% Similarity=0.547 Sum_probs=89.9
Q ss_pred CCCCCcccCCcceec-ceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCC
Q 040947 5 GTLDKCKACDKTVYV-VDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPS 83 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~-~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 83 (210)
...++|.+|+++|+. +++|.++|+.||+.||+|..|+++|.+..|++++|++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---------------- 66 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---------------- 66 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC----------------
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC----------------
Confidence 457899999999985 678999999999999999999999998899999999999999999987
Q ss_pred CCCCCCCCCCCcccccCCCCCccccccceeecCc-eeEecCccccccccccCCCC
Q 040947 84 SCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLE-KVTMEGDCFHKTCFRCAHGG 137 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~ 137 (210)
++|.+|+++|.+++ .|.++++.||++||+|..|+
T Consensus 67 --------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 67 --------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp --------------------CBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred --------------------CccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 89999999998765 58999999999999999986
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.90 E-value=7.6e-25 Score=163.13 Aligned_cols=114 Identities=18% Similarity=0.321 Sum_probs=99.5
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCC--CCCeeccCCeeeccchHHHhhhccCCCCCCccCCCCC
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLV--MSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNP 82 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~ 82 (210)
...++|..|+++|...++|.++++.||++||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~--------------- 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--------------- 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC---------------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC---------------
Confidence 35789999999999776799999999999999999999997 3579999999999999999998
Q ss_pred CCCCCCCCCCCCcccccCCCCC--ccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHh
Q 040947 83 SSCSNQNRTPSKLSSLFSGTQD--KCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~g~~~--~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~ 160 (210)
+ +|++|+++|.+ ..|.+.++ ..|.+..|++++++|||..||.+
T Consensus 68 ---------------------~~~~C~~C~~~I~~-~~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~ 112 (122)
T 1m3v_A 68 ---------------------NSGAGGSGGHMGSG-GDVMVVGE-------------PTLMGGEFGDEDERLITRLENTQ 112 (122)
T ss_dssp ---------------------CCCSSSCSSCCSCC-EESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTT
T ss_pred ---------------------CCCccccCCCCcCc-hheEEcCC-------------cCCCCCccEecCCEeEccCcchh
Confidence 5 99999999984 34455553 35778899999999999999999
Q ss_pred hhcCCCCc
Q 040947 161 LFMEKGNY 168 (210)
Q Consensus 161 ~f~~k~~~ 168 (210)
++.+++.-
T Consensus 113 ~~~~~g~~ 120 (122)
T 1m3v_A 113 FDAANGID 120 (122)
T ss_dssp TTCCSCCC
T ss_pred chhhcCCC
Confidence 99888753
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.86 E-value=2e-22 Score=148.32 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=91.7
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCC--CCeeccCCeeeccchHHHhhhccCCCCCCccCCCCC
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVM--SNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNP 82 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~ 82 (210)
|+.++|.+|+++|+..++|.++++.||+.||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 1 g~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~--------------- 65 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG--------------- 65 (114)
T ss_dssp CCCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT---------------
T ss_pred CcCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC---------------
Confidence 567999999999997778999999999999999999999985 589999999999999999998
Q ss_pred CCCCCCCCCCCCcccccCCCCCccccccceeecCceeEecCccccccccccCCCCCc-CCCCCeeecCCeeecHhHHHhh
Q 040947 83 SSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCP-LTHSSYAALDGVLYCKHHFAQL 161 (210)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~-l~~~~f~~~dg~~yC~~c~~~~ 161 (210)
++|..|.. ++.|. |+.+ |.++.|++.+++|||..||.++
T Consensus 66 ---------------------~~c~~c~~----~~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 66 ---------------------SGGHMGSG----GDVMV---------------VGEPTLMGGEFGDEDERLITRLENTQF 105 (114)
T ss_dssp ---------------------SCCSSCBS----CSCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTTC
T ss_pred ---------------------cccCcCCC----CceeE---------------cCCccCCCCeeEEcCCEeecchhhhcc
Confidence 67776642 22221 3344 5677899999999999999999
Q ss_pred hcCCCCc
Q 040947 162 FMEKGNY 168 (210)
Q Consensus 162 f~~k~~~ 168 (210)
.++.+..
T Consensus 106 ~~~~g~~ 112 (114)
T 1j2o_A 106 DAANGID 112 (114)
T ss_dssp CCTTSSC
T ss_pred ccccCCC
Confidence 8887754
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=2.5e-21 Score=133.38 Aligned_cols=79 Identities=20% Similarity=0.428 Sum_probs=73.7
Q ss_pred CCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeecCceeEecCccccccccc
Q 040947 53 DGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFR 132 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~ 132 (210)
+|++||++||.++|+ ++|++|+++|. ++.|.++++.||++||+
T Consensus 1 gg~~yC~~~y~~~~~------------------------------------~~C~~C~~~I~-~~~v~a~~~~~H~~CF~ 43 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS------------------------------------PKCGGCNRPVL-ENYLSAMDTVWHPECFV 43 (80)
T ss_dssp CCCCCCCCCCCCCCS------------------------------------CBCTTTCCBCC-SSCEEETTEEECTTTCB
T ss_pred CCCccchhHHhhhcC------------------------------------CccccCCCeec-ceeEEECCCeEecCcCC
Confidence 478999999999887 79999999998 57899999999999999
Q ss_pred cCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCc
Q 040947 133 CAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 133 C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~ 168 (210)
|..|+++|..+.|+..++++||+.||.++|++++..
T Consensus 44 C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 44 CGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred hhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 999999999888999999999999999999999853
No 11
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=2e-21 Score=133.86 Aligned_cols=78 Identities=27% Similarity=0.532 Sum_probs=73.3
Q ss_pred CCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeecCceeEecCccccccccc
Q 040947 53 DGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFR 132 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~ 132 (210)
+|++||++||.++|+ ++|++|+++|. ++.|.++++.||++||+
T Consensus 1 gg~~yC~~cy~~~~~------------------------------------~~C~~C~~~I~-~~~v~a~~~~~H~~CF~ 43 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA------------------------------------PRCARCSKTLT-QGGVTYRDQPWHRECLV 43 (80)
T ss_dssp CCCCSCCCCCCCCSS------------------------------------CCCTTTCCCCC-SCCEESSSSEECTTTCB
T ss_pred CCcEEcHHHHccccC------------------------------------CcCCCCCCEec-CcEEEECCchhhhhhCC
Confidence 588999999999887 79999999998 56899999999999999
Q ss_pred cCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 133 CAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 133 C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
|..|+++|.+..|+..++++||+.||.++|++++.
T Consensus 44 C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 44 CTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp CSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred cccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 99999999988899999999999999999999985
No 12
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.83 E-value=3.2e-21 Score=133.43 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=73.9
Q ss_pred CCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeecCce-eEecCcccccccc
Q 040947 53 DGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEK-VTMEGDCFHKTCF 131 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~-v~~~g~~~H~~CF 131 (210)
++.+||++||.++|+ ++|++|+++|.+++. |.++++.||++||
T Consensus 1 ~~~~yC~~cy~~~~~------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 44 (82)
T 1x63_A 1 GSSGSSGKCTTREDS------------------------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCF 44 (82)
T ss_dssp CCSCCCCCCCSCCCS------------------------------------CBCSSSCCBCCSSSCEEECSSCEEETTTC
T ss_pred CCCcCchhHHccccC------------------------------------CcCccCCcccccCceEEEECccccccccC
Confidence 468999999999887 799999999997665 8899999999999
Q ss_pred ccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCc
Q 040947 132 RCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 132 ~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~ 168 (210)
+|..|+++|..+.|+..++++||+.||.++|++|+..
T Consensus 45 ~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 45 TCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp CCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred chhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 9999999999888999999999999999999999864
No 13
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-21 Score=135.26 Aligned_cols=80 Identities=21% Similarity=0.503 Sum_probs=73.7
Q ss_pred CCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeec-CceeEecCcccccccc
Q 040947 53 DGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYP-LEKVTMEGDCFHKTCF 131 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~-~e~v~~~g~~~H~~CF 131 (210)
+|++||+.||.++|+ ++|++|+++|.+ +..|.++++.||++||
T Consensus 1 ~g~~yC~~~y~~~~~------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 44 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA------------------------------------NTCAECQQLIGHDSRELFYEDRHFHEGCF 44 (82)
T ss_dssp CCCCCCCCCCCCCCS------------------------------------CBCTTTCCBCCSSCCBCCCSSCCCBTTTS
T ss_pred CCceechhHhCcccC------------------------------------CcCccCCCccccCcEEEEeCCccccccCC
Confidence 589999999999987 799999999985 4457889999999999
Q ss_pred ccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCc
Q 040947 132 RCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 132 ~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~ 168 (210)
+|+.|+++|.+..|+..++++||+.||.++|++++..
T Consensus 45 ~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 45 RCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp BCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred eecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 9999999999889999999999999999999999863
No 14
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=1.5e-20 Score=129.93 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeecCceeEecCccccccccc
Q 040947 53 DGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFR 132 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~ 132 (210)
+|++||++||. +++ ++|++|+++|. ++.|.++++.||++||+
T Consensus 2 ~g~~yC~~~y~-~~~------------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~~CF~ 43 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATL------------------------------------EKCATCSQPIL-DRILRAMGKAYHPGCFT 43 (81)
T ss_dssp CCCCCCCCCCC-SSC------------------------------------CBCTTTCCBCC-SCCEEETTEEECTTTCB
T ss_pred cCCEECHHHhh-cCC------------------------------------CccccCCCeec-ceeEEECCccccHHhcC
Confidence 68999999998 554 79999999998 67899999999999999
Q ss_pred cCCCCCcCCCCCeeec-CCeeecHhHHHhhhcCCCCc
Q 040947 133 CAHGGCPLTHSSYAAL-DGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 133 C~~C~~~l~~~~f~~~-dg~~yC~~c~~~~f~~k~~~ 168 (210)
|..|+++|.+..|... +|++||+.||.++|++|+..
T Consensus 44 C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 44 CVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 9999999998888876 79999999999999999853
No 15
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.79 E-value=3.6e-20 Score=127.93 Aligned_cols=67 Identities=30% Similarity=0.685 Sum_probs=58.3
Q ss_pred CCCCCCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 1 MAFTGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
|+|.++.++|..|+++|+.++.|.++++.||++||+|..|+++|....|+++++++||+.||.++|+
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp -------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CCCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 8999999999999999988889999999999999999999999999899999999999999999998
No 16
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-20 Score=125.15 Aligned_cols=73 Identities=21% Similarity=0.484 Sum_probs=67.0
Q ss_pred CCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeec----CceeEecCccccc
Q 040947 53 DGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYP----LEKVTMEGDCFHK 128 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~----~e~v~~~g~~~H~ 128 (210)
++++||++||.++|+ ++|++|+++|.+ .+.|.++++.||+
T Consensus 1 g~~~yC~~cy~~~~~------------------------------------~~C~~C~~~I~~~g~~~~~~~a~~~~~H~ 44 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA------------------------------------KKCAGCKNPITGFGKGSSVVAYEGQSWHD 44 (77)
T ss_dssp CCSSCCTTCCCSCCC------------------------------------CCCSSSCCCCCCCSSCCCEEEETTEEEET
T ss_pred CCCeEchhHhchhhC------------------------------------ccCcccCCcccCCCCCceeEEECcceeCc
Confidence 478999999999987 899999999994 3678999999999
Q ss_pred cccccCCCCCcCCCCCeeecCCeeecHhHHHhh
Q 040947 129 TCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQL 161 (210)
Q Consensus 129 ~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~ 161 (210)
+||+|..|+++|.+..|+..+|+|||+.||.++
T Consensus 45 ~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 45 YCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp TTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred ccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 999999999999988899999999999999763
No 17
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1e-19 Score=125.56 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=70.5
Q ss_pred CCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeecCceeEecCccccccccc
Q 040947 53 DGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFR 132 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~ 132 (210)
.+.+||+.||.++|+ ++|++|+++|. ++.|.++++.||++||+
T Consensus 1 g~~~yC~~~y~~~~~------------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~~CF~ 43 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFG------------------------------------EFCHGCSLLMT-GPFMVAGEFKYHPECFA 43 (81)
T ss_dssp CCCCCCCCCSSCCSS------------------------------------CBCTTTCCBCC-SCCBCCTTCCBCTTSCB
T ss_pred CCCccchhHHhhhcC------------------------------------CcCccCCCCcC-ceEEEECCceeccccCC
Confidence 367999999999988 89999999999 78899999999999999
Q ss_pred cCCCCCcCC-CCCee-ecCCeeecHhHHHhhhcCCCC
Q 040947 133 CAHGGCPLT-HSSYA-ALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 133 C~~C~~~l~-~~~f~-~~dg~~yC~~c~~~~f~~k~~ 167 (210)
|..|+++|. +..|. ..+++|||+.||.++|+++..
T Consensus 44 C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 44 CMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred ccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 999999996 46677 489999999999999998753
No 18
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=7.4e-19 Score=124.01 Aligned_cols=76 Identities=41% Similarity=0.881 Sum_probs=70.9
Q ss_pred CCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCccccccccccc
Q 040947 103 QDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNYSHVLKAANHK 178 (210)
Q Consensus 103 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~~~~~~~~~~~ 178 (210)
.++|.+|+++|.+.+.|.++++.||++||+|..|+++|....|+..+|++||+.||.++|++|+.+..+++..+++
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~~~ 90 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGPSS 90 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCCCC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCCCC
Confidence 4799999999998788999999999999999999999998889999999999999999999999999998877664
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.7e-18 Score=118.00 Aligned_cols=69 Identities=36% Similarity=0.744 Sum_probs=64.9
Q ss_pred CCCCCCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeecc-chHHHhhhcc
Q 040947 1 MAFTGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCK-PHFEQLFKES 69 (210)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~cy~~~~~~~ 69 (210)
|+|++..++|..|+++|+.++.|.++++.||++||+|..|+++|.+..|+++++++||. .||.++|+++
T Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSS
T ss_pred cccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccc
Confidence 67889999999999999988899999999999999999999999998999999999999 7999999843
No 20
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3e-18 Score=116.81 Aligned_cols=70 Identities=37% Similarity=0.622 Sum_probs=64.0
Q ss_pred cCCCCCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecH-hHHHhhhcCCCCc
Q 040947 99 FSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCK-HHFAQLFMEKGNY 168 (210)
Q Consensus 99 ~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~-~c~~~~f~~k~~~ 168 (210)
+.+..++|++|+++|.+++.|.++++.||++||+|..|+++|....|+..|+++||+ .||.++|++|+..
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 334458999999999988899999999999999999999999988899999999999 7999999999863
No 21
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3e-18 Score=116.79 Aligned_cols=60 Identities=33% Similarity=0.824 Sum_probs=57.3
Q ss_pred CCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeecc-chHHHhhh
Q 040947 8 DKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCK-PHFEQLFK 67 (210)
Q Consensus 8 ~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~cy~~~~~ 67 (210)
|+|..|+++|..++.|.++|+.||++||+|..|+++|.+..|++++|++||. .||.++|+
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC
Confidence 6899999999988899999999999999999999999998999999999999 69999998
No 22
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=3.7e-18 Score=117.76 Aligned_cols=76 Identities=18% Similarity=0.418 Sum_probs=66.5
Q ss_pred CeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeecCceeEecCcccccccccc
Q 040947 54 GVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRC 133 (210)
Q Consensus 54 g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C 133 (210)
..+||+.||.++|+ ++|+.|+++|. ++.|.++++.||++||+|
T Consensus 2 ~~~yC~~dy~~~~~------------------------------------~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C 44 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG------------------------------------TRCFSCDQFIE-GEVVSALGKTYHPDCFVC 44 (81)
T ss_dssp CCCCCCSCGGGSCC------------------------------------CBCTTTCCBCC-SCCEEETTEEECTTTSSC
T ss_pred CCCcchHHHHhHhC------------------------------------CcCccccCEec-cceEEECCceeCccCCcc
Confidence 46899999999998 89999999998 778999999999999999
Q ss_pred CCCCCcCCCCCeeecCC-eeecHhHHHhhhcCCC
Q 040947 134 AHGGCPLTHSSYAALDG-VLYCKHHFAQLFMEKG 166 (210)
Q Consensus 134 ~~C~~~l~~~~f~~~dg-~~yC~~c~~~~f~~k~ 166 (210)
..|+++|..+.++..++ .+||..||.+++...+
T Consensus 45 ~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~ 78 (81)
T 1v6g_A 45 AVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGP 78 (81)
T ss_dssp SSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCC
T ss_pred ccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCC
Confidence 99999998665655554 5799999998877664
No 23
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=9.9e-18 Score=115.55 Aligned_cols=65 Identities=25% Similarity=0.548 Sum_probs=60.7
Q ss_pred CCCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 102 TQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 102 ~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
+.++|.+|+++|.+++.|.++++.||++||+|..|+++|.+ .|+..||+|||+.||.++|++++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 34799999999998889999999999999999999999985 699999999999999999999985
No 24
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.71 E-value=4.7e-18 Score=117.20 Aligned_cols=66 Identities=35% Similarity=0.700 Sum_probs=58.0
Q ss_pred CCCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 102 TQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 102 ~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
+.++|.+|+++|.+++.|.++++.||++||+|..|+++|....|+..++++||+.||.++|++++.
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 71 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGY 71 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCccc
Confidence 348999999999888899999999999999999999999988899999999999999999999997
No 25
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.8e-17 Score=116.89 Aligned_cols=73 Identities=42% Similarity=0.959 Sum_probs=67.2
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccCCCCCCccC
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQT 78 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 78 (210)
+.++|..|+++|+..+.|.++++.||++||+|..|+++|....|+++++++||+.||.++|++++.+...|+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~ 86 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGS 86 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCC
Confidence 4689999999999778999999999999999999999999988999999999999999999988877766654
No 26
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.70 E-value=1.3e-17 Score=110.58 Aligned_cols=61 Identities=28% Similarity=0.531 Sum_probs=58.6
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCC
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEK 165 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k 165 (210)
++|++|+++|. ++.|.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|++|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 79999999999 88899999999999999999999999888999999999999999999986
No 27
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=4.1e-17 Score=114.75 Aligned_cols=65 Identities=22% Similarity=0.482 Sum_probs=61.0
Q ss_pred CCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCc
Q 040947 103 QDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 103 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~ 168 (210)
.++|+.|+++|. ++.|.++++.||++||+|..|+++|.+..|++.+|++||+.||.++|++|+..
T Consensus 25 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 379999999997 88899999999999999999999999888999999999999999999999853
No 28
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3e-17 Score=109.71 Aligned_cols=63 Identities=19% Similarity=0.520 Sum_probs=59.9
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|++.++++||+.||.++|++++.
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 6 SGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred CCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 79999999998 6789999999999999999999999988899999999999999999999985
No 29
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.6e-17 Score=109.55 Aligned_cols=64 Identities=27% Similarity=0.555 Sum_probs=60.3
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~ 168 (210)
++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|++.++++||+.||.++|++++..
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 6 SGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 79999999998 67799999999999999999999999888999999999999999999999863
No 30
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.5e-17 Score=113.50 Aligned_cols=63 Identities=30% Similarity=0.615 Sum_probs=58.8
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
++.++|..|+++|+.+++|.++++.||++||+|..|+++|.+ .|+++++++||+.||.++|++
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~ 75 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGS 75 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTC
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCC
Confidence 457899999999998889999999999999999999999986 699999999999999999984
No 31
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3e-17 Score=111.78 Aligned_cols=67 Identities=34% Similarity=0.663 Sum_probs=62.3
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecH-hHHHhhhcCCCCccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCK-HHFAQLFMEKGNYSH 170 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~-~c~~~~f~~k~~~~~ 170 (210)
|+|++|+++|.+++.|.++++.||++||+|..|+++|..+.|+..+|++||. .||.++|++++....
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~ 68 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRG 68 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcC
Confidence 4799999999988899999999999999999999999988899999999999 699999999997543
No 32
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.5e-17 Score=113.35 Aligned_cols=67 Identities=16% Similarity=0.433 Sum_probs=61.9
Q ss_pred Cccccccceeec---CceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCccc
Q 040947 104 DKCAACEKTVYP---LEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNYSH 170 (210)
Q Consensus 104 ~~C~~C~~~I~~---~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~~~ 170 (210)
++|+.|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+..+|+|||+.||.++|++++..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 799999999983 3779999999999999999999999988899999999999999999999997553
No 33
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.7e-17 Score=110.00 Aligned_cols=65 Identities=29% Similarity=0.616 Sum_probs=60.8
Q ss_pred CccccccceeecC-ceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCc
Q 040947 104 DKCAACEKTVYPL-EKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 104 ~~C~~C~~~I~~~-e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~ 168 (210)
++|.+|+++|.++ +.|.++++.||++||+|..|+++|....|+..+|.+||+.||.++|++++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 7999999999975 6788999999999999999999999888999999999999999999999863
No 34
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.8e-17 Score=109.98 Aligned_cols=65 Identities=25% Similarity=0.569 Sum_probs=60.6
Q ss_pred CccccccceeecCc-eeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCc
Q 040947 104 DKCAACEKTVYPLE-KVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNY 168 (210)
Q Consensus 104 ~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~ 168 (210)
++|++|+++|.+.+ .|.++++.||++||+|..|+++|....|+..+|++||+.||.++|++++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 79999999999764 689999999999999999999999889999999999999999999999853
No 35
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=6.8e-17 Score=108.26 Aligned_cols=63 Identities=16% Similarity=0.344 Sum_probs=59.2
Q ss_pred CCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCC
Q 040947 103 QDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKG 166 (210)
Q Consensus 103 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~ 166 (210)
.++|..|+++|. ++.|.++++.||++||+|..|+++|....|+..+|++||+.||.++|+++.
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 67 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCS
T ss_pred CCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCC
Confidence 379999999998 678999999999999999999999998889999999999999999999875
No 36
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.6e-17 Score=109.29 Aligned_cols=62 Identities=19% Similarity=0.631 Sum_probs=58.3
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
..+++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+++++++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 35689999999998 678999999999999999999999998899999999999999999998
No 37
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.3e-17 Score=109.16 Aligned_cols=63 Identities=25% Similarity=0.651 Sum_probs=58.6
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
...++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+++++++||+.||.++|++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 65 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAS 65 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCC
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhcc
Confidence 35689999999998 6779999999999999999999999998999999999999999999984
No 38
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1.2e-16 Score=112.19 Aligned_cols=65 Identities=23% Similarity=0.432 Sum_probs=60.4
Q ss_pred CCCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 102 TQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 102 ~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
..++|..|+++|. ++.|.++++.||++||+|..|+++|....|+..++++||+.||.++|++|+.
T Consensus 24 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 24 RMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred cCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 3479999999999 5779999999999999999999999988899999999999999999999974
No 39
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.2e-17 Score=111.97 Aligned_cols=64 Identities=17% Similarity=0.387 Sum_probs=59.9
Q ss_pred CCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 103 QDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 103 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
.++|..|+++|. ++.|.++++.||++||+|..|+++|....|+..++++||+.||.++|++|+.
T Consensus 15 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 379999999998 5789999999999999999999999877899999999999999999999974
No 40
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.5e-17 Score=109.28 Aligned_cols=63 Identities=16% Similarity=0.393 Sum_probs=58.6
Q ss_pred Cccccccceeec---CceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCC
Q 040947 104 DKCAACEKTVYP---LEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKG 166 (210)
Q Consensus 104 ~~C~~C~~~I~~---~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~ 166 (210)
++|.+|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|++++
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 799999999985 366899999999999999999999998889999999999999999999875
No 41
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.66 E-value=3.7e-17 Score=108.32 Aligned_cols=62 Identities=24% Similarity=0.621 Sum_probs=58.4
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
..++|.+|+++|. +++|.++|+.||++||+|..|+++|.+..|++++|++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 3589999999999 8889999999999999999999999998999999999999999999974
No 42
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=6.8e-17 Score=110.12 Aligned_cols=64 Identities=30% Similarity=0.633 Sum_probs=58.2
Q ss_pred CccccccceeecCce-eEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 104 DKCAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
++|++|+++|.+.+. |.++|+.||++||+|..|+++|..+.|+..||++||+.||.++|++++.
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 799999999986555 6899999999999999999999988899999999999999999999974
No 43
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=4.5e-17 Score=111.03 Aligned_cols=68 Identities=25% Similarity=0.597 Sum_probs=61.6
Q ss_pred CCCCCCCCCcccCCcceecce-eEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 1 MAFTGTLDKCKACDKTVYVVD-MLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~-~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
|+.....++|.+|+++|+..+ ++.++|+.||++||+|..|+++|....|+.++|++||+.||.++|++
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 73 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 73 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCC
T ss_pred hccCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhc
Confidence 456677899999999998644 57899999999999999999999988899999999999999999983
No 44
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=8.4e-17 Score=118.07 Aligned_cols=68 Identities=18% Similarity=0.390 Sum_probs=61.5
Q ss_pred CCCccccccceeecCceeEecCccccccccccCCCCCcCCC--CCeeecCCeeecHhHHHhhhcCCCCcc
Q 040947 102 TQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTH--SSYAALDGVLYCKHHFAQLFMEKGNYS 169 (210)
Q Consensus 102 ~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~--~~f~~~dg~~yC~~c~~~~f~~k~~~~ 169 (210)
+.++|++|+++|...+.|.++++.||++||+|+.|+++|.. ..|+.+||+|||+.||.++|++++...
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c 71 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMG 71 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSC
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcC
Confidence 34899999999996668999999999999999999999974 579999999999999999999998643
No 45
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=7e-17 Score=113.55 Aligned_cols=64 Identities=27% Similarity=0.657 Sum_probs=59.5
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhcc
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKES 69 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~ 69 (210)
...++|..|+++|. +++|.++++.||++||+|..|+++|.+..|+++++++||+.||.++|+++
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~ 86 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASG 86 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCC
Confidence 45789999999996 88899999999999999999999999989999999999999999999843
No 46
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.4e-17 Score=111.54 Aligned_cols=62 Identities=19% Similarity=0.535 Sum_probs=57.8
Q ss_pred CCCCcccCCcceec---ceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 6 TLDKCKACDKTVYV---VDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 6 ~~~~C~~C~~~I~~---~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
.+++|..|+++|.+ .++|.++++.||++||+|..|+++|.+..|+++++++||+.||.++|+
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC
Confidence 35899999999983 378999999999999999999999998899999999999999999998
No 47
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=8.1e-17 Score=108.35 Aligned_cols=63 Identities=32% Similarity=0.674 Sum_probs=58.7
Q ss_pred CCCCcccCCcceecc-eeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 6 TLDKCKACDKTVYVV-DMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
.+++|..|+++|.++ ++|.++++.||++||+|..|+++|....|+++++++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 67 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccC
Confidence 458999999999975 679999999999999999999999998999999999999999999984
No 48
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=9.4e-17 Score=107.55 Aligned_cols=63 Identities=17% Similarity=0.486 Sum_probs=59.3
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
++.++|..|+++|. +++|.++++.||++||+|..|+++|....|+.+++++||+.||.++|++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 56789999999998 6789999999999999999999999998999999999999999999984
No 49
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.1e-16 Score=107.65 Aligned_cols=63 Identities=22% Similarity=0.626 Sum_probs=58.5
Q ss_pred CCCCcccCCcceecc-eeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 6 TLDKCKACDKTVYVV-DMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
.+++|..|+++|.+. .+|.++|+.||++||+|..|+++|.+..|+++++++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 67 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAS 67 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSS
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCC
Confidence 358999999999976 479999999999999999999999998999999999999999999983
No 50
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1e-16 Score=108.01 Aligned_cols=64 Identities=19% Similarity=0.463 Sum_probs=58.7
Q ss_pred CCCCCcccCCcceec---ceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 5 GTLDKCKACDKTVYV---VDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~---~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
..+++|..|+++|.. .++|.++++.||++||+|..|+++|.+..|+.+++++||..||.++|+|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCC
Confidence 457899999999984 3679999999999999999999999998999999999999999999884
No 51
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=5e-17 Score=111.58 Aligned_cols=65 Identities=18% Similarity=0.460 Sum_probs=59.6
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccC
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESG 70 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 70 (210)
...++|..|+++|+ +++|.++++.||++||+|..|+++|....|+++++++||+.||.++|++++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 34689999999998 578999999999999999999999998889999999999999999998643
No 52
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2e-16 Score=106.49 Aligned_cols=63 Identities=19% Similarity=0.464 Sum_probs=58.2
Q ss_pred CCCCCcccCCcceecc-eeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 5 GTLDKCKACDKTVYVV-DMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~-~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
...++|.+|+++|+.. .+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 3568999999999965 47999999999999999999999998889999999999999999986
No 53
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.6e-16 Score=111.47 Aligned_cols=65 Identities=22% Similarity=0.498 Sum_probs=59.4
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccC
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESG 70 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 70 (210)
...++|..|+++|+ +++|.++++.||++||+|..|++.|....|+++++++||+.||.++|++++
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 34578999999999 578999999999999999999999998899999999999999999998543
No 54
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=4.5e-16 Score=106.89 Aligned_cols=62 Identities=24% Similarity=0.466 Sum_probs=57.3
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCC
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGN 167 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~ 167 (210)
++|+.|+++|. ++.|.++++.||++||+|..|+++|....| .++|++||+.||.++|+++..
T Consensus 16 ~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 16 YICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred CCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 79999999999 788999999999999999999999997754 889999999999999998764
No 55
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2e-16 Score=109.43 Aligned_cols=65 Identities=35% Similarity=0.756 Sum_probs=58.4
Q ss_pred CCCCCccccccceeecCceeEecCccccccccccCCCCCcCCCCCee--ecCCeeecHhHHHhhhcC
Q 040947 100 SGTQDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYA--ALDGVLYCKHHFAQLFME 164 (210)
Q Consensus 100 ~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~--~~dg~~yC~~c~~~~f~~ 164 (210)
.++.++|.+|+++|++.+.|.++++.||++||+|..|+++|....|. ..||++||+.||.++|+.
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 34458999999999988899999999999999999999999988887 479999999999988765
No 56
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.2e-16 Score=110.49 Aligned_cols=64 Identities=36% Similarity=0.801 Sum_probs=58.8
Q ss_pred CCCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCee--ccCCeeeccchHHHhhh
Q 040947 4 TGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYS--SMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~--~~~g~~yC~~cy~~~~~ 67 (210)
.++.++|.+|+++|+..+.|.++++.||++||+|..|++.|....|+ +++|++||+.||.++|+
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 45678999999999988889999999999999999999999998888 57999999999998876
No 57
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.7e-16 Score=107.22 Aligned_cols=65 Identities=29% Similarity=0.613 Sum_probs=59.7
Q ss_pred CCCCcccCCcceecce-eEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccC
Q 040947 6 TLDKCKACDKTVYVVD-MLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESG 70 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~ 70 (210)
.+++|.+|+++|..++ +|.++++.||++||+|..|+++|....|+++++++||+.||.++|++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCC
Confidence 3589999999998765 5899999999999999999999999899999999999999999999654
No 58
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.2e-16 Score=106.95 Aligned_cols=61 Identities=25% Similarity=0.617 Sum_probs=57.7
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
.+++|.+|+++|. ++.|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHS
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcC
Confidence 3689999999998 578999999999999999999999998899999999999999999998
No 59
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.62 E-value=5.3e-16 Score=111.02 Aligned_cols=70 Identities=24% Similarity=0.449 Sum_probs=63.5
Q ss_pred Cccccccceeec-CceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCcccccc
Q 040947 104 DKCAACEKTVYP-LEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNYSHVLK 173 (210)
Q Consensus 104 ~~C~~C~~~I~~-~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~~~~~~ 173 (210)
++|++|+++|.+ ++.|.++++.||++||+|..|+++|.+..|+..+|++||+.||.++|++++......+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I 76 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAI 76 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBC
T ss_pred CcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCcc
Confidence 799999999985 6778999999999999999999999988899999999999999999999997554433
No 60
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4.6e-16 Score=107.13 Aligned_cols=62 Identities=27% Similarity=0.630 Sum_probs=57.4
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeecc-CCeeeccchHHHhhh
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSM-DGVLYCKPHFEQLFK 67 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~~ 67 (210)
...++|..|+++|. +++|.++++.||++||+|..|+++|.+..|+.. +|++||+.||.++|+
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhc
Confidence 46789999999998 678999999999999999999999998888876 799999999999998
No 61
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=5.8e-16 Score=104.17 Aligned_cols=61 Identities=21% Similarity=0.462 Sum_probs=56.6
Q ss_pred CccccccceeecCc-eeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcC
Q 040947 104 DKCAACEKTVYPLE-KVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFME 164 (210)
Q Consensus 104 ~~C~~C~~~I~~~e-~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~ 164 (210)
++|.+|+++|.+.+ .|.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 79999999999654 68999999999999999999999888899999999999999999964
No 62
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.61 E-value=2.5e-16 Score=117.06 Aligned_cols=70 Identities=19% Similarity=0.445 Sum_probs=61.7
Q ss_pred CccccccceeecCce-eEecCccccccccccCCCCCcCC-CCCeeecCCeeecHhHHHhhhcCCCCcccccc
Q 040947 104 DKCAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLT-HSSYAALDGVLYCKHHFAQLFMEKGNYSHVLK 173 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~-~~~f~~~dg~~yC~~c~~~~f~~k~~~~~~~~ 173 (210)
++|+.|+++|.+.+. |.++++.||++||+|..|+++|. +..|+..++++||..||.++|++++.++.+.+
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~ 80 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCC
Confidence 489999999997554 68999999999999999999995 55799999999999999999999997665443
No 63
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.61 E-value=5.6e-16 Score=103.90 Aligned_cols=60 Identities=32% Similarity=0.731 Sum_probs=56.1
Q ss_pred CccccccceeecCce-eEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhc
Q 040947 104 DKCAACEKTVYPLEK-VTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFM 163 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~-v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~ 163 (210)
++|++|+++|.+.+. |.++++.||++||+|..|+++|..+.|+..+|++||+.||.++|+
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 799999999997776 579999999999999999999998789999999999999999986
No 64
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.9e-16 Score=105.58 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=57.5
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCC-CCCeeecCCeeecHhHHHhhhcCCC
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLT-HSSYAALDGVLYCKHHFAQLFMEKG 166 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~-~~~f~~~dg~~yC~~c~~~~f~~k~ 166 (210)
++|++|+++|. ++.|.++++.||++||+|..|+++|. +..|++.++++||..||.++++++.
T Consensus 6 ~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 6 SGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp CSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSC
T ss_pred CCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccc
Confidence 79999999998 57899999999999999999999998 7789999999999999999988754
No 65
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=5.9e-16 Score=106.25 Aligned_cols=62 Identities=27% Similarity=0.663 Sum_probs=58.0
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
.+++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+++++++||+.||.++|++
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 75 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTC
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCC
Confidence 4689999999998 5689999999999999999999999988999999999999999999983
No 66
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.60 E-value=8e-16 Score=114.45 Aligned_cols=68 Identities=19% Similarity=0.366 Sum_probs=63.3
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCcccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNYSHV 171 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~~~~ 171 (210)
++|++|+++|..++.|.++|+.||++||+|..|+++|.+..|+..||++||+.||.++|++++.....
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~ 71 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHN 71 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCS
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCC
Confidence 79999999999778899999999999999999999999888999999999999999999999975443
No 67
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=6.2e-16 Score=104.60 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=56.6
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCC-CCCeeccCCeeeccchHHHhhh
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLV-MSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
.+++|++|+++|. +++|.++++.||++||+|..|+++|. +..|+++++++||..||.++++
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4689999999998 57899999999999999999999998 7789999999999999998876
No 68
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.6e-16 Score=114.23 Aligned_cols=67 Identities=19% Similarity=0.482 Sum_probs=60.8
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCC--CCCeeecCCeeecHhHHHhhhcC--CCCccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLT--HSSYAALDGVLYCKHHFAQLFME--KGNYSH 170 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~--~~~f~~~dg~~yC~~c~~~~f~~--k~~~~~ 170 (210)
++|++|+++|...+.|.++++.||++||+|..|+++|. +..|+..+|++||+.||.++|++ +|..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~ 76 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGG 76 (122)
T ss_dssp CCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSS
T ss_pred CCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCC
Confidence 79999999999766799999999999999999999997 45799999999999999999999 886443
No 69
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-16 Score=107.08 Aligned_cols=63 Identities=22% Similarity=0.583 Sum_probs=57.8
Q ss_pred CCCCcccCCcceec-ceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 6 TLDKCKACDKTVYV-VDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 6 ~~~~C~~C~~~I~~-~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
.+++|..|+++|.. +.+|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~ 77 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSS 77 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGG
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCC
Confidence 46799999999984 4568899999999999999999999998999999999999999999983
No 70
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.59 E-value=6.9e-16 Score=122.98 Aligned_cols=62 Identities=32% Similarity=0.770 Sum_probs=58.6
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.++|.+|+++|++++.|.++++.||++||+|..|+++|.+..|+.++|++||+.||.++|+
T Consensus 114 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 175 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175 (192)
T ss_dssp CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC
T ss_pred CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC
Confidence 45679999999998888999999999999999999999998899999999999999999998
No 71
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.59 E-value=1.2e-15 Score=120.59 Aligned_cols=67 Identities=21% Similarity=0.516 Sum_probs=60.6
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCcccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNYSHV 171 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~~~~ 171 (210)
++|..|+++|...+.|.++++.||++||+|..|+++|....| .++|++||+.||.++|++++..+..
T Consensus 61 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~ 127 (182)
T 2jtn_A 61 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQL 127 (182)
T ss_dssp CBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCC
T ss_pred CcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCC
Confidence 799999999996667889999999999999999999998765 6899999999999999999975543
No 72
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=8.6e-16 Score=105.46 Aligned_cols=62 Identities=24% Similarity=0.542 Sum_probs=56.8
Q ss_pred CCCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhc
Q 040947 5 GTLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKE 68 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~ 68 (210)
...++|..|+++|. ++.|.++|+.||++||+|..|+++|.... ++++|++||+.||.++|+|
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCC
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCC
Confidence 45689999999999 78899999999999999999999999875 5899999999999999984
No 73
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.58 E-value=8.5e-16 Score=103.00 Aligned_cols=62 Identities=24% Similarity=0.637 Sum_probs=57.1
Q ss_pred CCCCcccCCcceeccee-EeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 6 TLDKCKACDKTVYVVDM-LSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~-v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
..++|.+|+++|...+. +.++|+.||++||+|..|+++|....|+.++|++||+.||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46899999999997775 689999999999999999999998889999999999999999874
No 74
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=113.77 Aligned_cols=61 Identities=23% Similarity=0.558 Sum_probs=56.1
Q ss_pred CCCcccCCcceecceeEeeCCccccCCCcccccccCCCC--CCCeeccCCeeeccchHHHhhh
Q 040947 7 LDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLV--MSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
.++|.+|+++|+...+|.++++.||+.||+|..|+++|. +..|++++|++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 579999999999666799999999999999999999997 4689999999999999999874
No 75
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-15 Score=112.91 Aligned_cols=61 Identities=20% Similarity=0.490 Sum_probs=56.0
Q ss_pred CCccccccceeecCceeEecCccccccccccCCCCCcCC--CCCeeecCCeeecHhHHHhhhc
Q 040947 103 QDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLT--HSSYAALDGVLYCKHHFAQLFM 163 (210)
Q Consensus 103 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~--~~~f~~~dg~~yC~~c~~~~f~ 163 (210)
.++|++|+++|...+.|.++++.||++||+|..|+++|. +..|+.++|++||+.||.++||
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 379999999999666799999999999999999999997 4679999999999999999986
No 76
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=99.03 Aligned_cols=58 Identities=21% Similarity=0.566 Sum_probs=54.1
Q ss_pred CccccccceeecC-ceeEecCcccc--ccccccCCCCCcCCCCCeeecCCeeec-HhHHHhh
Q 040947 104 DKCAACEKTVYPL-EKVTMEGDCFH--KTCFRCAHGGCPLTHSSYAALDGVLYC-KHHFAQL 161 (210)
Q Consensus 104 ~~C~~C~~~I~~~-e~v~~~g~~~H--~~CF~C~~C~~~l~~~~f~~~dg~~yC-~~c~~~~ 161 (210)
++|++|+++|.++ +.|.++++.|| ++||+|..|+++|.+..|+.++|+||| ..||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 6899999999974 67999999999 999999999999998899999999999 9999875
No 77
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=99.34 Aligned_cols=59 Identities=19% Similarity=0.627 Sum_probs=54.4
Q ss_pred CCCcccCCcceecc-eeEeeCCcccc--CCCcccccccCCCCCCCeeccCCeeec-cchHHHh
Q 040947 7 LDKCKACDKTVYVV-DMLSLEGMPYH--KSCFKCSHCKGTLVMSNYSSMDGVLYC-KPHFEQL 65 (210)
Q Consensus 7 ~~~C~~C~~~I~~~-~~v~~~g~~~H--~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~ 65 (210)
+++|.+|+++|..+ +.|.++|+.|| ++||+|..|+++|.+..|++++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 47899999999974 78999999999 999999999999999999999999999 8898764
No 78
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.2e-15 Score=101.17 Aligned_cols=60 Identities=23% Similarity=0.618 Sum_probs=54.9
Q ss_pred CCCCcccCCcceec----ceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHh
Q 040947 6 TLDKCKACDKTVYV----VDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQL 65 (210)
Q Consensus 6 ~~~~C~~C~~~I~~----~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 65 (210)
.+++|++|+++|.+ .+.|.++++.||+.||+|..|+++|.+..|+++++++||+.||.++
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 46899999999993 3789999999999999999999999998999999999999999753
No 79
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.53 E-value=9.1e-15 Score=109.35 Aligned_cols=67 Identities=18% Similarity=0.393 Sum_probs=60.2
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCC--CCCeeecCCeeecHhHHHhhhcC--CCCccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLT--HSSYAALDGVLYCKHHFAQLFME--KGNYSH 170 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~--~~~f~~~dg~~yC~~c~~~~f~~--k~~~~~ 170 (210)
++|+.|+++|.+.+.|.++++.||++||+|..|+.+|. +..|+..||+|||+.||.++|++ ++....
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~ 73 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCD 73 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTC
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcC
Confidence 78999999999655789999999999999999999996 35799999999999999999999 776443
No 80
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.50 E-value=1.2e-14 Score=107.97 Aligned_cols=66 Identities=23% Similarity=0.550 Sum_probs=58.1
Q ss_pred CCCcccCCcceecce-eEeeCCccccCCCcccccccCCCC-CCCeeccCCeeeccchHHHhhhccCCC
Q 040947 7 LDKCKACDKTVYVVD-MLSLEGMPYHKSCFKCSHCKGTLV-MSNYSSMDGVLYCKPHFEQLFKESGNF 72 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~-~v~~~g~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~~~~~~~~ 72 (210)
.++|..|+++|+..+ +|.++++.||+.||+|..|++.|. +..|+.+++++||..||.++|++++.+
T Consensus 8 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~ 75 (123)
T 2l3k_A 8 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGS 75 (123)
T ss_dssp SCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCC
T ss_pred CCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCC
Confidence 348999999999755 579999999999999999999995 557999999999999999999966544
No 81
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.6e-14 Score=99.29 Aligned_cols=61 Identities=21% Similarity=0.515 Sum_probs=55.7
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCC-CCee-ccCCeeeccchHHHhhh
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVM-SNYS-SMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~-~~f~-~~~g~~yC~~cy~~~~~ 67 (210)
.+++|..|+++|. ++.|.++++.||++||+|..|+++|.. ..|+ ++++++||+.||.++|+
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 4579999999999 788999999999999999999999974 5677 58999999999999998
No 82
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.50 E-value=2.3e-14 Score=111.92 Aligned_cols=67 Identities=21% Similarity=0.516 Sum_probs=60.4
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcCCCCcccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFMEKGNYSHV 171 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~k~~~~~~ 171 (210)
++|.+|+++|...+.|.++|+.||++||+|..|+++|.+..| ..||++||+.||.++|+++|..+..
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~ 73 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQL 73 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCC
T ss_pred CccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccccccccccccc
Confidence 799999999996667899999999999999999999998765 7899999999999999999975443
No 83
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.44 E-value=5.7e-14 Score=111.51 Aligned_cols=67 Identities=18% Similarity=0.448 Sum_probs=60.2
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCC--CCeeecCCeeecHhHHHhhhcC--CCCccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTH--SSYAALDGVLYCKHHFAQLFME--KGNYSH 170 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~--~~f~~~dg~~yC~~c~~~~f~~--k~~~~~ 170 (210)
++|+.|+++|...+.|.++++.||++||+|..|+++|.. ..|+..||++||+.||.++|++ +|..+.
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~ 76 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACG 76 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTC
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCC
Confidence 799999999996556899999999999999999999985 6899999999999999999999 576433
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.4e-13 Score=94.56 Aligned_cols=61 Identities=21% Similarity=0.478 Sum_probs=53.2
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCC-eeeccchHHHhhh
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDG-VLYCKPHFEQLFK 67 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~cy~~~~~ 67 (210)
.+++|..|+++|. +++|.++++.||++||+|..|+++|....++..++ .+||..||.+++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 3579999999998 78899999999999999999999999777776655 4799999987764
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.42 E-value=6.1e-08 Score=54.16 Aligned_cols=28 Identities=50% Similarity=0.986 Sum_probs=27.0
Q ss_pred CccccccceeecCceeEecCcccccccc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCF 131 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF 131 (210)
++|++|++.|++.|.|.+.|+.||+.||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 6999999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.36 E-value=8.5e-08 Score=53.56 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=27.4
Q ss_pred CCCcccCCcceecceeEeeCCccccCCCc
Q 040947 7 LDKCKACDKTVYVVDMLSLEGMPYHKSCF 35 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~~v~~~g~~~H~~CF 35 (210)
.++|.+|++.|+..|.+.++|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999999999999999999998
No 87
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=88.73 E-value=0.17 Score=36.16 Aligned_cols=92 Identities=13% Similarity=0.296 Sum_probs=47.9
Q ss_pred cccccccCCCCCC------CeeccCCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCcccc
Q 040947 35 FKCSHCKGTLVMS------NYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAA 108 (210)
Q Consensus 35 F~C~~C~~~L~~~------~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~ 108 (210)
+.|..|...+... .....=|..||..|..+.+..+ ..|+.
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----------------------------------~~CP~ 53 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----------------------------------NTCPT 53 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC----------------------------------SBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC----------------------------------CCCCC
Confidence 5566665554321 1334457778888887765411 46777
Q ss_pred ccceeecCceeEecCccccccccccCCCCCcCCCC----C--eeecCCeeecHhHHHhhhc
Q 040947 109 CEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHS----S--YAALDGVLYCKHHFAQLFM 163 (210)
Q Consensus 109 C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~----~--f~~~dg~~yC~~c~~~~f~ 163 (210)
|++.+........ ..-.+=+.|..|...+... . ....=|..||..|..+.+.
T Consensus 54 Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 54 CRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp TCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH
T ss_pred CCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH
Confidence 7777653332211 1122334566666655321 1 1222377777777765543
No 88
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.45 E-value=0.27 Score=32.38 Aligned_cols=34 Identities=15% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCCCCCCcccCCcceecceeEeeCCccccCCCcc
Q 040947 3 FTGTLDKCKACDKTVYVVDMLSLEGMPYHKSCFK 36 (210)
Q Consensus 3 ~~~~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~ 36 (210)
|......|+.|...|..+.....-+..||..|+.
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~ 44 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCVA 44 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHH
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHHH
Confidence 5667789999999998665444555667877763
No 89
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=84.98 E-value=1 Score=29.07 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=27.3
Q ss_pred CCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 32 KSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 32 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.-|.|..|...+.. .....-|..||..|..+.+.
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHH
Confidence 345888999888875 34457899999999998875
No 90
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.74 E-value=0.89 Score=29.83 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=22.3
Q ss_pred cCCCCCccccccceeecCceeEecCcccccccc
Q 040947 99 FSGTQDKCAACEKTVYPLEKVTMEGDCFHKTCF 131 (210)
Q Consensus 99 ~~g~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF 131 (210)
+......|+.|...|.++..-..-+..||..|+
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 334457899999999865433344566777776
No 91
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.18 E-value=1 Score=28.65 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=25.2
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
-+.|..|...+........=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH
Confidence 4778888887776333336788999999988765
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.65 E-value=2 Score=30.04 Aligned_cols=95 Identities=16% Similarity=0.301 Sum_probs=54.2
Q ss_pred CCCCcccCCcceecceeE--eeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCC
Q 040947 6 TLDKCKACDKTVYVVDML--SLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPS 83 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v--~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~ 83 (210)
....|..|+..-...++| ..=++.||..|+.=.. . .+..+..+|..|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-----~----~~~~~~W~C~~C~--------------------- 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-----T----PLKRAGWQCPECK--------------------- 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-----C----TTTSTTCCCTTTC---------------------
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-----c----cccccCccCCcCC---------------------
Confidence 456899998763212223 3345788988875321 1 1134566776552
Q ss_pred CCCCCCCCCCCcccccCCCCCccccccceeecCceeE--ecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHh
Q 040947 84 SCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPLEKVT--MEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~ 160 (210)
.|..|++.-....+|. .-++.||..|+.= +|.. +..+.-||..|...
T Consensus 56 ---------------------~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 ---------------------VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP-----VMKS----VPTNGWKCKNCRIC 104 (111)
T ss_dssp ---------------------CCTTTCCCSCCTTEEECSSSCCEEEGGGSSS-----CCSS----CCSSCCCCHHHHCC
T ss_pred ---------------------cccccCccCCCCCeeECCCCCcHHhHHhcCC-----cccc----CCCCCcCCcCCcCc
Confidence 5777777654333333 3367899987642 2321 22467789888654
No 93
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=82.46 E-value=1 Score=31.88 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=20.5
Q ss_pred CCCCCcccCCcceecc----e--eEeeCCccccCCCcc
Q 040947 5 GTLDKCKACDKTVYVV----D--MLSLEGMPYHKSCFK 36 (210)
Q Consensus 5 ~~~~~C~~C~~~I~~~----~--~v~~~g~~~H~~CF~ 36 (210)
...-.|..|...+... + ++..-|..||..|+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~ 42 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 42 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHH
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHH
Confidence 4456899998887532 1 445567777766653
No 94
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=81.71 E-value=1.2 Score=27.54 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=22.8
Q ss_pred cCCCCCcCCCCCeeecCCeeec-HhHHHh
Q 040947 133 CAHGGCPLTHSSYAALDGVLYC-KHHFAQ 160 (210)
Q Consensus 133 C~~C~~~l~~~~f~~~dg~~yC-~~c~~~ 160 (210)
|..|+..++...-+..||+.|| +.|...
T Consensus 10 C~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 10 CEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp STTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred CCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 6778888887778888999998 777764
No 95
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.60 E-value=1.2 Score=27.67 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=24.5
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+... ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQTECGHRFCESCMAALLS 47 (66)
T ss_dssp CEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHH
Confidence 47788887777653 3356788999999998873
No 96
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=77.51 E-value=2.2 Score=27.29 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.0
Q ss_pred CcccccccCCCCCCCeecc-CCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSM-DGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+.. ..... =|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHH
T ss_pred CCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHH
Confidence 4778888887775 34444 489999999988876
No 97
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.93 E-value=2 Score=29.30 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=24.2
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|...+........=|..||..|..+.+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHH
Confidence 678888877765322256688999999988776
No 98
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=76.37 E-value=4.2 Score=28.54 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=24.4
Q ss_pred CCCcccCCcceecceeEeeC----CccccCCCcccccccCCCCCCCeeccCCeeeccch
Q 040947 7 LDKCKACDKTVYVVDMLSLE----GMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPH 61 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~~v~~~----g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c 61 (210)
...|..|+. .+++|.-+ .+.||..|+. |.. .-.|..||..|
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 356888873 35655443 3578888864 332 23567778754
No 99
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=75.34 E-value=2.5 Score=28.58 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=24.7
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+........=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 3678888887775322236788999999988765
No 100
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=75.16 E-value=1.1 Score=35.26 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=24.4
Q ss_pred cccCCCCCcCCCCCeeecCCeeecHhHHHh
Q 040947 131 FRCAHGGCPLTHSSYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 131 F~C~~C~~~l~~~~f~~~dg~~yC~~c~~~ 160 (210)
.+|..||..+....-...||+++|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 468888888776666777999999999975
No 101
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.78 E-value=2.4 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=22.0
Q ss_pred cccccccC-CCCCCC---eeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKG-TLVMSN---YSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~-~L~~~~---f~~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|.. .+.... ....=|..||..|..+.+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH
Confidence 56777766 444332 2345788899999988764
No 102
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.31 E-value=2.1 Score=27.00 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=24.9
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHH
Confidence 4778888887775 33346788999999988764
No 103
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=73.96 E-value=3.7 Score=25.42 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=19.1
Q ss_pred ccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 36 KCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 36 ~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
.|..|...+........=|..||..|..+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHH
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHh
Confidence 45555555544333344567788888877654
No 104
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.58 E-value=2.6 Score=27.29 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=24.1
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|...+.. .....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHH
Confidence 678888777765 34456788999999988765
No 105
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=73.42 E-value=1.9 Score=29.94 Aligned_cols=65 Identities=17% Similarity=0.324 Sum_probs=39.0
Q ss_pred cccccCCCCCCCeeccCCeeeccchHHHhhhccCCCCCCccCCCCCCCCCCCCCCCCCcccccCCCCCccccccceeecC
Q 040947 37 CSHCKGTLVMSNYSSMDGVLYCKPHFEQLFKESGNFSKNFQTGKNPSSCSNQNRTPSKLSSLFSGTQDKCAACEKTVYPL 116 (210)
Q Consensus 37 C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~C~~C~~~I~~~ 116 (210)
|..|+.++..-.-.+.=+.++|.+|+......+ ...|..|+.+|..-
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---------------------------------~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---------------------------------DKMCPGCSDPVQRI 50 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---------------------------------CCBCTTTCCBCSEE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhcc---------------------------------CCCCcCcCCeeeee
Confidence 666777766432233455689999997643210 15899999999754
Q ss_pred ceeEecCccccccccccC---CCCCcC
Q 040947 117 EKVTMEGDCFHKTCFRCA---HGGCPL 140 (210)
Q Consensus 117 e~v~~~g~~~H~~CF~C~---~C~~~l 140 (210)
|.. .+|.. |.|. .|.+.+
T Consensus 51 e~~-~~~~i-----f~C~~~~~Ckrty 71 (101)
T 3vk6_A 51 EQC-TRGSL-----FMCSIVQGCKRTY 71 (101)
T ss_dssp EEE-EGGGC-----CCCCCCCCCCCCC
T ss_pred EEe-ccCCE-----EECCCCCCHHHHh
Confidence 443 33554 4555 455543
No 106
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.78 E-value=2.7 Score=29.41 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=23.6
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=|.|..|...+........=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc
Confidence 3778888777765322226788899999887654
No 107
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=72.53 E-value=8 Score=24.55 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=23.7
Q ss_pred CccccccceeecCceeE--ecCccccccccc--------cCCCCCcCC
Q 040947 104 DKCAACEKTVYPLEKVT--MEGDCFHKTCFR--------CAHGGCPLT 141 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~--------C~~C~~~l~ 141 (210)
..|..|...+.....+. .-+..||..|+. |-.|...|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 57999988776444332 346677777763 555555554
No 108
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=72.30 E-value=3 Score=27.68 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=25.6
Q ss_pred CCcccccccCCCCCCCeecc-CCeeeccchHHHhhh
Q 040947 33 SCFKCSHCKGTLVMSNYSSM-DGVLYCKPHFEQLFK 67 (210)
Q Consensus 33 ~CF~C~~C~~~L~~~~f~~~-~g~~yC~~cy~~~~~ 67 (210)
.-|.|..|...+.. ..... =|..||..|..+.+.
T Consensus 12 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 12 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTTEETTTTEECSS-CEECTTTCCEECHHHHHHHHH
T ss_pred cCCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHH
Confidence 34788999888775 33445 499999999988765
No 109
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=72.29 E-value=2.5 Score=24.72 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.8
Q ss_pred eeecCCeeecHhHHHhh
Q 040947 145 YAALDGVLYCKHHFAQL 161 (210)
Q Consensus 145 f~~~dg~~yC~~c~~~~ 161 (210)
|...+-+|||.+||+++
T Consensus 22 ~mSVnTQP~CHEC~err 38 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERR 38 (49)
T ss_dssp BCCTTTTTSCHHHHHHH
T ss_pred EEEecCccchHHHHHHH
Confidence 66779999999999975
No 110
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=71.02 E-value=3.1 Score=29.20 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=25.3
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=|.|..|...+... ....=|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCcCChhhcCe-EECCcCChhhHHHHHHHHh
Confidence 37888888887653 4456789999999988765
No 111
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=70.92 E-value=2.3 Score=26.20 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=23.8
Q ss_pred ccccccCCCCCCCeeccCCeeec-cchHHHh
Q 040947 36 KCSHCKGTLVMSNYSSMDGVLYC-KPHFEQL 65 (210)
Q Consensus 36 ~C~~C~~~L~~~~f~~~~g~~yC-~~cy~~~ 65 (210)
-|..|+..+....-+.++|+.|| +.|....
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccC
Confidence 46788888887777889999999 6777644
No 112
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.50 E-value=4.6 Score=25.92 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=25.1
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+... ....=|..||..|..+.+.
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 19 EVTCPICLELLKEP-VSADCNHSFCRACITLNYE 51 (85)
T ss_dssp TTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHH
T ss_pred CCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHH
Confidence 47888888877653 3445788999999988765
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=70.45 E-value=2.8 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=28.8
Q ss_pred ccccccceeecCceeE--ecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhh
Q 040947 105 KCAACEKTVYPLEKVT--MEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQL 161 (210)
Q Consensus 105 ~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~ 161 (210)
.|..|++.-..+++|. .-++.||..|+.= +|.. +..|.-+|..|....
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNP-----PVAE----PPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSS-----CCSS----CCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCC-----CccC----CCCCCeECccccchh
Confidence 5777877654344443 2357899887642 2321 235678899886543
No 114
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.18 E-value=4.1 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=24.9
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+... ....=|..||..|..+.+.
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 19 EVTCPICLELLTQP-LSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHH
T ss_pred CCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHH
Confidence 37888888887653 3346788999999988765
No 115
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=70.01 E-value=3.5 Score=30.70 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=25.7
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
-+.|..|...+........=|..||..|..+.+.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH
Confidence 4688888888876322336789999999998875
No 116
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.59 E-value=3.8 Score=25.74 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=23.2
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
-+.|..|...+... ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 15 VPECAICLQTCVHP-VSLPCKHVFCYLCVKGASW 47 (71)
T ss_dssp CCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTT
T ss_pred CCCCccCCcccCCC-EEccCCCHHHHHHHHHHHH
Confidence 46778887777653 3345788899999987654
No 117
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=69.38 E-value=3.3 Score=30.97 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=26.3
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=|.|..|...|... ....-|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHH
Confidence 37889998888763 4457899999999988765
No 118
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=69.14 E-value=3.6 Score=29.74 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=23.4
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
|.|..|...+.. .....=|..||..|..+.+.
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTT
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHH
Confidence 568888777765 33456788999999987654
No 119
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=68.84 E-value=4.4 Score=26.75 Aligned_cols=35 Identities=6% Similarity=-0.033 Sum_probs=28.1
Q ss_pred CCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 32 KSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 32 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.=|.|..|...+.. ......|..||..|..+.+.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHh
Confidence 456999999988876 44456899999999988775
No 120
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=67.86 E-value=4.3 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=25.5
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=|.|..|...+.. .....=|..||..|..+.+.
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHh
Confidence 3778888887765 34457889999999988775
No 121
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=67.42 E-value=3.7 Score=28.17 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=25.1
Q ss_pred CcccccccCCCCCCCeec-cCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSS-MDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~ 67 (210)
-+.|..|...+.. .... .=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHH
Confidence 4778888887765 3343 7889999999988765
No 122
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.11 E-value=4.7 Score=25.57 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=27.1
Q ss_pred CccccccceeecCceeE--ecCcccccccc--------ccCCCCCcCC
Q 040947 104 DKCAACEKTVYPLEKVT--MEGDCFHKTCF--------RCAHGGCPLT 141 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF--------~C~~C~~~l~ 141 (210)
..|..|...+...+.+. .-+..||..|+ .|-.|...+.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 68999998887555433 34788898886 3777776664
No 123
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=66.53 E-value=5.8 Score=27.07 Aligned_cols=35 Identities=6% Similarity=-0.133 Sum_probs=28.0
Q ss_pred CCCcccccccCCCCCCCeeccCC-eeeccchHHHhhh
Q 040947 32 KSCFKCSHCKGTLVMSNYSSMDG-VLYCKPHFEQLFK 67 (210)
Q Consensus 32 ~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~cy~~~~~ 67 (210)
+.=|.|..|...+.+ ......| ..||..|..+.+.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHH
Confidence 567999999988876 4455677 9999999988765
No 124
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=66.40 E-value=2.2 Score=25.96 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=27.1
Q ss_pred CccccccceeecC----c--eeEecCcccccccc--------ccCCCCCcCCCCC
Q 040947 104 DKCAACEKTVYPL----E--KVTMEGDCFHKTCF--------RCAHGGCPLTHSS 144 (210)
Q Consensus 104 ~~C~~C~~~I~~~----e--~v~~~g~~~H~~CF--------~C~~C~~~l~~~~ 144 (210)
..|+.|...+... + .+..-|..||..|+ .|-.|...+....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 5788888776421 1 23445778888887 5888887776543
No 125
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=65.98 E-value=2.6 Score=33.85 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=27.9
Q ss_pred CCCccccccceeecCceeEecCcccccccc----------ccCCCCCcCCC
Q 040947 102 TQDKCAACEKTVYPLEKVTMEGDCFHKTCF----------RCAHGGCPLTH 142 (210)
Q Consensus 102 ~~~~C~~C~~~I~~~e~v~~~g~~~H~~CF----------~C~~C~~~l~~ 142 (210)
....|..|...|..+..=.--+..||..|+ +|..|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 347899999999855321114677888887 57777776543
No 126
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=65.95 E-value=7.5 Score=26.57 Aligned_cols=36 Identities=6% Similarity=-0.030 Sum_probs=29.0
Q ss_pred cCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 31 HKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 31 H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
-+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLL 61 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTT
T ss_pred CcHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHH
Confidence 3677999999988876 44556999999999988764
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=65.60 E-value=5.9 Score=31.59 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=29.5
Q ss_pred ccCCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 30 YHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 30 ~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
--+.-|.|..|...+.. ......|..||..|..+.+.
T Consensus 204 ~~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHH
T ss_pred CCCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHH
Confidence 34577999999988876 44556899999999988765
No 128
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=65.58 E-value=4.9 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=24.9
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
-|.|..|...+.. .....=|..||..|..+.+.
T Consensus 52 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCcCChHHcC-cEEeeCCCcccHHHHHHHHh
Confidence 3778888887775 33446788999999988765
No 129
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.53 E-value=5.4 Score=27.29 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHH
Confidence 5677887776543 3345788999999988775
No 130
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=64.02 E-value=3.5 Score=25.51 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCCCcccCCcceecceeEeeCCccccCCCc--------ccccccCCCCC
Q 040947 6 TLDKCKACDKTVYVVDMLSLEGMPYHKSCF--------KCSHCKGTLVM 46 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~~g~~~H~~CF--------~C~~C~~~L~~ 46 (210)
....|..|...+....++..-|..||..|+ +|-.|+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 456799999987633345556778898887 38888888764
No 131
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.92 E-value=31 Score=23.33 Aligned_cols=40 Identities=30% Similarity=0.645 Sum_probs=24.2
Q ss_pred CccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhcC
Q 040947 104 DKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFME 164 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~~ 164 (210)
+.|..|+..|- +.+.|..| ..|-.| +.|+|+.||+-....
T Consensus 17 qiCqiCGD~VG----~~~~Ge~F-VAC~eC----------------~FPvCrpCyEYErke 56 (93)
T 1weo_A 17 QFCEICGDQIG----LTVEGDLF-VACNEC----------------GFPACRPCYEYERRE 56 (93)
T ss_dssp CBCSSSCCBCC----BCSSSSBC-CSCSSS----------------CCCCCHHHHHHHHHT
T ss_pred CccccccCccc----cCCCCCEE-Eeeecc----------------CChhhHHHHHHHHhc
Confidence 78999988773 34444432 333333 236799998765443
No 132
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.45 E-value=3.6 Score=25.70 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=22.9
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
-+.|..|...+.. ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHHHSSC
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHHHHHH
Confidence 3667777777765 4455778899999987653
No 133
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=61.85 E-value=7.8 Score=22.61 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=10.7
Q ss_pred CCeeeccchHHHhhh
Q 040947 53 DGVLYCKPHFEQLFK 67 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~ 67 (210)
=+..||..|..+.+.
T Consensus 27 CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLK 41 (55)
T ss_dssp TSCEEETTHHHHHHH
T ss_pred CCCcccHHHHHHHHH
Confidence 456778888877665
No 134
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=61.18 E-value=6.4 Score=29.01 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=25.4
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=|.|..|...+.. .....=|..||..|..+.+.
T Consensus 78 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCEeecCChhhcC-CEEcCCCCchhHHHHHHHHH
Confidence 3778888887765 34456788999999988875
No 135
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=59.84 E-value=12 Score=23.04 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=24.5
Q ss_pred CccccccceeecCceeE--ecCcccccccc--------ccCCCCCcCC
Q 040947 104 DKCAACEKTVYPLEKVT--MEGDCFHKTCF--------RCAHGGCPLT 141 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF--------~C~~C~~~l~ 141 (210)
..|..|...+..++.+. .-+..||..|+ +|-.|...|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 57999988775443332 34677787776 3666666654
No 136
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=59.40 E-value=4.1 Score=28.26 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=22.4
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHHHhh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLF 66 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~ 66 (210)
|.|..|...+.. .....=|..||..|..+.+
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHH
Confidence 678888777765 3334678889999987665
No 137
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=59.39 E-value=7.4 Score=29.81 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=29.1
Q ss_pred CCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 32 KSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 32 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.-|.|..|...+.. ......|..||..|..+.+.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHH
Confidence 567999999988876 55557999999999988775
No 138
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=59.26 E-value=2.1 Score=33.53 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=26.1
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHH
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQ 64 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 64 (210)
=.+|..|+.......-...+|+++|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 4679999998887666678999999999965
No 139
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=59.21 E-value=3.2 Score=25.85 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=27.4
Q ss_pred CccccccceeecC----c--eeEecCcccccccc--------ccCCCCCcCCCCC
Q 040947 104 DKCAACEKTVYPL----E--KVTMEGDCFHKTCF--------RCAHGGCPLTHSS 144 (210)
Q Consensus 104 ~~C~~C~~~I~~~----e--~v~~~g~~~H~~CF--------~C~~C~~~l~~~~ 144 (210)
..|+.|...+... + .+..-|..||..|+ .|-.|...+....
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 5799998876531 1 23345778888887 6888877776443
No 140
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.91 E-value=3.1 Score=25.68 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=22.1
Q ss_pred CcccccccCCCCCC-----C-eeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMS-----N-YSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~-----~-f~~~~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+... . ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 35667776655421 1 3345678899999988765
No 141
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=56.51 E-value=4.3 Score=29.65 Aligned_cols=34 Identities=21% Similarity=0.545 Sum_probs=27.2
Q ss_pred CCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 33 SCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 33 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
.=|.|..|...|... ....=|..||..|..+.+.
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGG
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHh
Confidence 457899999888763 5567899999999998765
No 142
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.87 E-value=13 Score=23.25 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=20.3
Q ss_pred cccccccCCCCCCCee--ccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMSNYS--SMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~--~~~g~~yC~~cy~~~~~ 67 (210)
..|..|...+...... ..=+..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH
Confidence 4566666665533222 24577899999987765
No 143
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.76 E-value=12 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=24.0
Q ss_pred cccccccCCCCCC---CeeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMS---NYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~---~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|...+... .....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHH
Confidence 6788887777652 22335688999999998876
No 144
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=54.02 E-value=11 Score=24.45 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=21.0
Q ss_pred cccccccCCCCCC--Cee-ccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMS--NYS-SMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~--~f~-~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|-.++... .+. ..=|..+|..|+.+...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~ 47 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT 47 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHh
Confidence 5677776666432 222 12678899999987753
No 145
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=54.00 E-value=14 Score=21.49 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=9.2
Q ss_pred CCeeeccchHHHhhh
Q 040947 53 DGVLYCKPHFEQLFK 67 (210)
Q Consensus 53 ~g~~yC~~cy~~~~~ 67 (210)
=|..||..|..+.+.
T Consensus 27 C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 27 CGHGFHAECVDMWLG 41 (55)
T ss_dssp SCCEECTTHHHHTTT
T ss_pred CCCcccHHHHHHHHH
Confidence 355677777765543
No 146
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=53.10 E-value=9.9 Score=27.56 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=20.7
Q ss_pred CCcccccccCCCCC---CCeec--cCCeeeccchHHHhh
Q 040947 33 SCFKCSHCKGTLVM---SNYSS--MDGVLYCKPHFEQLF 66 (210)
Q Consensus 33 ~CF~C~~C~~~L~~---~~f~~--~~g~~yC~~cy~~~~ 66 (210)
+=|.|+.|++.+.. ..... .=.-+.|..|+....
T Consensus 7 ~~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~ 45 (129)
T 3ql9_A 7 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYM 45 (129)
T ss_dssp CSCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHH
T ss_pred CceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhh
Confidence 34789999998841 11222 234677888886443
No 147
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.91 E-value=9.1 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=18.8
Q ss_pred cccccccCCCCCCCeeccCCee-eccchHHHh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVL-YCKPHFEQL 65 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~~ 65 (210)
+.|..|...+.... +..=|.. +|..|..+.
T Consensus 26 ~~C~IC~~~~~~~~-~~pCgH~~~C~~C~~~~ 56 (75)
T 2ecg_A 26 KLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV 56 (75)
T ss_dssp HSCSSSCSSCCCBC-CSSSCCCCBCHHHHHHC
T ss_pred CCCCcCCCCCCCEE-EecCCCHHHHHHHhhCC
Confidence 45677766665432 2345666 899998643
No 148
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.57 E-value=14 Score=23.07 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=23.2
Q ss_pred CccccccccccCCCCCc-CCCCCeeec--CCeeecHhHHHhh
Q 040947 123 GDCFHKTCFRCAHGGCP-LTHSSYAAL--DGVLYCKHHFAQL 161 (210)
Q Consensus 123 g~~~H~~CF~C~~C~~~-l~~~~f~~~--dg~~yC~~c~~~~ 161 (210)
...+|. ..|..|+.. |.+.+|.-. .+--+|..||.+.
T Consensus 6 ~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 345566 667777754 555444322 2456899999874
No 149
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.35 E-value=4.3 Score=26.46 Aligned_cols=41 Identities=24% Similarity=0.591 Sum_probs=26.7
Q ss_pred CCCCcccCCcceec-----------ce---eEeeCCccccCCCcc--------cccccCCCCC
Q 040947 6 TLDKCKACDKTVYV-----------VD---MLSLEGMPYHKSCFK--------CSHCKGTLVM 46 (210)
Q Consensus 6 ~~~~C~~C~~~I~~-----------~~---~v~~~g~~~H~~CF~--------C~~C~~~L~~ 46 (210)
....|+.|...+.. ++ .+..-+..||..|+. |-.|++.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34678888887742 12 223367788888864 7777777653
No 150
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=51.20 E-value=6.4 Score=27.43 Aligned_cols=15 Identities=13% Similarity=0.490 Sum_probs=12.0
Q ss_pred CCccccccceeecCc
Q 040947 103 QDKCAACEKTVYPLE 117 (210)
Q Consensus 103 ~~~C~~C~~~I~~~e 117 (210)
...|..|++.|.-++
T Consensus 25 Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 25 RASCKKCSESIPKDS 39 (106)
T ss_dssp CCBCSSSCCBCCTTC
T ss_pred CCcchhhCCccCCCC
Confidence 368999999997555
No 151
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=50.81 E-value=5.7 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=22.1
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSNK 44 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCCC
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHHH
Confidence 6778887776652 2345778899999876654
No 152
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=49.27 E-value=6.9 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=19.2
Q ss_pred CccccccceeecCce-eEe-------c---Cccccccccc
Q 040947 104 DKCAACEKTVYPLEK-VTM-------E---GDCFHKTCFR 132 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~-v~~-------~---g~~~H~~CF~ 132 (210)
..|..|++.|.-++. |-. . ...||..||.
T Consensus 21 A~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 21 SSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp CBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 689999999975553 211 1 2357778875
No 153
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=48.93 E-value=16 Score=22.39 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=26.2
Q ss_pred CcccccccCCCCCCCeec-cCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSS-MDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~ 67 (210)
-|.|..++..+.+ .... ..|..|+..+..+.+.
T Consensus 3 ~~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~ 36 (61)
T 2bay_A 3 HMLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVK 36 (61)
T ss_dssp -CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHH
T ss_pred eEEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHH
Confidence 3788888888876 4555 7999999999988775
No 154
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.58 E-value=8.2 Score=23.06 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=14.9
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHH
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFE 63 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 63 (210)
+.|..|...+... ....=|..||..|..
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~ 34 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLE 34 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHc
Confidence 4566666555542 223355566666654
No 155
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=47.16 E-value=12 Score=24.82 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=22.6
Q ss_pred CccccccceeecCceeE--ecCcccccccc--------ccCCCCCcC
Q 040947 104 DKCAACEKTVYPLEKVT--MEGDCFHKTCF--------RCAHGGCPL 140 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF--------~C~~C~~~l 140 (210)
..|..|...+..++.+. .-+..||..|+ .|-.|...|
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 57888887776544432 34667777775 355555544
No 156
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=46.91 E-value=14 Score=24.57 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=7.0
Q ss_pred CCcccCCccee
Q 040947 8 DKCKACDKTVY 18 (210)
Q Consensus 8 ~~C~~C~~~I~ 18 (210)
..|+.|+.+|.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45777776664
No 157
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=46.27 E-value=18 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=21.8
Q ss_pred CCcccccccCCCCCC---Ceecc--CCeeeccchHHHhhh
Q 040947 33 SCFKCSHCKGTLVMS---NYSSM--DGVLYCKPHFEQLFK 67 (210)
Q Consensus 33 ~CF~C~~C~~~L~~~---~f~~~--~g~~yC~~cy~~~~~ 67 (210)
.=+.|+.|+..+... ....+ -+...|..|+.....
T Consensus 13 ~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~ 52 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMS 52 (142)
T ss_dssp CCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHH
T ss_pred CCCEecCCCCccccccccchhcCCCccccccHHHHHHHhc
Confidence 336888898888531 12222 556779888875543
No 158
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=45.85 E-value=10 Score=24.16 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=11.7
Q ss_pred CCeeeccchHHHhh
Q 040947 53 DGVLYCKPHFEQLF 66 (210)
Q Consensus 53 ~g~~yC~~cy~~~~ 66 (210)
+|.+||..||.+.-
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 67899999998764
No 159
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=45.51 E-value=8 Score=27.45 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=11.8
Q ss_pred CccccccceeecCc
Q 040947 104 DKCAACEKTVYPLE 117 (210)
Q Consensus 104 ~~C~~C~~~I~~~e 117 (210)
..|..|++.|.-++
T Consensus 16 A~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 16 AGCKKCKEKIVKGV 29 (117)
T ss_dssp EECTTSSCEECTTC
T ss_pred ccchhhCcccCCCC
Confidence 68999999998655
No 160
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=44.45 E-value=7.4 Score=25.90 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=16.8
Q ss_pred cccccccCCCCCCCee---ccCCeeeccchHHHh
Q 040947 35 FKCSHCKGTLVMSNYS---SMDGVLYCKPHFEQL 65 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~---~~~g~~yC~~cy~~~ 65 (210)
++|..|...|.+..|. .....-||-.|-...
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHH
Confidence 5566666666665555 234455555555443
No 161
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.69 E-value=17 Score=29.72 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=26.8
Q ss_pred CCCcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 32 KSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 32 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
..=|+|..|...+...--...-|..||+.|..+.+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH
Confidence 345888999888876322236789999999988765
No 162
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.75 E-value=20 Score=23.32 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCCCcccCCcceecceeEee-C-----CccccCCCc----------ccccccCCCC
Q 040947 6 TLDKCKACDKTVYVVDMLSL-E-----GMPYHKSCF----------KCSHCKGTLV 45 (210)
Q Consensus 6 ~~~~C~~C~~~I~~~~~v~~-~-----g~~~H~~CF----------~C~~C~~~L~ 45 (210)
....|..|......++.+.. - ...||..|+ +|..|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 35689999877654443322 2 267888886 5666666554
No 163
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=41.14 E-value=14 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=18.8
Q ss_pred cccccccCCCCCCCeeccCCee-eccchHHHh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVL-YCKPHFEQL 65 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~~ 65 (210)
+.|..|...+.... ...=|.. +|..|..+.
T Consensus 25 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 25 KLCKICMDRNIAIV-FVPCGHLVTCKQCAEAV 55 (74)
T ss_dssp TBCTTTSSSBCCEE-EETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCEE-EcCCCChhHHHHhhhcC
Confidence 46677766665532 3345666 898887654
No 164
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=40.12 E-value=9.3 Score=27.18 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=11.6
Q ss_pred CccccccceeecCc
Q 040947 104 DKCAACEKTVYPLE 117 (210)
Q Consensus 104 ~~C~~C~~~I~~~e 117 (210)
..|..|++.|.-++
T Consensus 39 A~Ck~C~~kI~Kge 52 (116)
T 3od8_A 39 ASCKKCSESIPKDS 52 (116)
T ss_dssp CBCTTTCCBCCTTS
T ss_pred ccCcccCCccCCCC
Confidence 68999999997554
No 165
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.01 E-value=20 Score=21.47 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.6
Q ss_pred CcccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 34 CFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 34 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHHHHHHHHH
Confidence 4788888887775 33447889999999988875
No 166
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=39.72 E-value=9.9 Score=26.77 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=11.5
Q ss_pred CccccccceeecCc
Q 040947 104 DKCAACEKTVYPLE 117 (210)
Q Consensus 104 ~~C~~C~~~I~~~e 117 (210)
..|..|++.|.-++
T Consensus 20 a~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 20 STCKGCMEKIEKGQ 33 (111)
T ss_dssp CBCTTTCCBCCTTC
T ss_pred ccccccCCCccCCc
Confidence 68999999997554
No 167
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.21 E-value=20 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCcccccccCCCCCCCeec-cCCeeeccchHHHhhh
Q 040947 33 SCFKCSHCKGTLVMSNYSS-MDGVLYCKPHFEQLFK 67 (210)
Q Consensus 33 ~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~~ 67 (210)
.=|.|..|...+.. .... ..|..||..|..+.+.
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHH
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHH
Confidence 34889999888876 4555 5899999999988775
No 168
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.20 E-value=17 Score=23.16 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCcccCCcceecce---eEeeCCcccc
Q 040947 7 LDKCKACDKTVYVVD---MLSLEGMPYH 31 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~---~v~~~g~~~H 31 (210)
...|..|+.+|+++. +|..+|+.|+
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 457888888888764 3455555554
No 169
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=35.61 E-value=21 Score=22.85 Aligned_cols=44 Identities=20% Similarity=0.491 Sum_probs=29.0
Q ss_pred CCCcccCCcceecceeEeeCC-----ccccCCCcccccccCCCCCCCeeccCCeeeccchHH
Q 040947 7 LDKCKACDKTVYVVDMLSLEG-----MPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFE 63 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~~v~~~g-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 63 (210)
...| .|+++-. +++|.-.+ ..||..|.. |... ..++.||..|..
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~~ 64 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 64 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCCc
Confidence 3567 6988754 67776555 578999876 3221 236788988864
No 170
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.29 E-value=12 Score=23.56 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=28.9
Q ss_pred CccccccceeecCce-eEec---CccccccccccCCCCCcCCCCCee----ecCCeeecHhHH
Q 040947 104 DKCAACEKTVYPLEK-VTME---GDCFHKTCFRCAHGGCPLTHSSYA----ALDGVLYCKHHF 158 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~-v~~~---g~~~H~~CF~C~~C~~~l~~~~f~----~~dg~~yC~~c~ 158 (210)
..|..|++++.+.+. |.-. .+.||..|. .|....+. ..++..+|..|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv-------glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRICT-------GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH-------TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhcc-------CCCHHHHHHhhccCCCcEECcCcc
Confidence 579999999875544 4444 567887663 24332221 123567787764
No 171
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=35.21 E-value=10 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=35.0
Q ss_pred ccccccceeecCceeEecCcccccccc---------ccCCCCCcCCCCCeeecCCeeecH
Q 040947 105 KCAACEKTVYPLEKVTMEGDCFHKTCF---------RCAHGGCPLTHSSYAALDGVLYCK 155 (210)
Q Consensus 105 ~C~~C~~~I~~~e~v~~~g~~~H~~CF---------~C~~C~~~l~~~~f~~~dg~~yC~ 155 (210)
-|..|+.||..-.++..-...|-.+|. .|..|..++..-.....++...|.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~~~if~C~ 62 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCS 62 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEGGGCCCCC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEeccCCEEECC
Confidence 588999999744445555667777776 488888888754455555555565
No 172
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=35.15 E-value=16 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=14.0
Q ss_pred CCcccCCcceecce---eEeeCCcccc
Q 040947 8 DKCKACDKTVYVVD---MLSLEGMPYH 31 (210)
Q Consensus 8 ~~C~~C~~~I~~~~---~v~~~g~~~H 31 (210)
..|..|+.+|+++. +|..+|+.|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTH 30 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEE
Confidence 56777777777664 2444444443
No 173
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.83 E-value=16 Score=26.53 Aligned_cols=29 Identities=21% Similarity=0.634 Sum_probs=19.4
Q ss_pred CccccccceeecCce-e---Eec------C---ccccccccc
Q 040947 104 DKCAACEKTVYPLEK-V---TME------G---DCFHKTCFR 132 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~-v---~~~------g---~~~H~~CF~ 132 (210)
..|..|++.|.-+++ | ... | ..||..||.
T Consensus 28 A~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~ 69 (134)
T 2cs2_A 28 STCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69 (134)
T ss_dssp CBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHH
T ss_pred ccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcCh
Confidence 689999999975553 2 111 2 257888886
No 174
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.44 E-value=37 Score=21.11 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=17.3
Q ss_pred cccccccCCCCCCCeeccCCee-eccchHHHh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVL-YCKPHFEQL 65 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~~ 65 (210)
..|..|-...... .+..=|.. +|..|..+.
T Consensus 16 ~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~ 46 (68)
T 2ea5_A 16 KDCVVCQNGTVNW-VLLPCRHTCLCDGCVKYF 46 (68)
T ss_dssp SCCSSSSSSCCCC-EETTTTBCCSCTTHHHHC
T ss_pred CCCCCcCcCCCCE-EEECCCChhhhHHHHhcC
Confidence 4566665554442 23345555 899998753
No 175
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=33.32 E-value=15 Score=23.44 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=29.7
Q ss_pred CccccccceeecCceeEe--cCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhh
Q 040947 104 DKCAACEKTVYPLEKVTM--EGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLF 162 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~--~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f 162 (210)
..|..|+++-....+|.- -+..||..|.. |... ...++..||..|..++-
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-------~~~~--~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-------IMAA--PPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-------CSSC--CCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCC-------CCcc--CCCCCCEEChhccCchh
Confidence 479999988642234432 34678887752 2111 11246788999987653
No 176
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=33.30 E-value=9.4 Score=30.51 Aligned_cols=16 Identities=13% Similarity=0.613 Sum_probs=11.2
Q ss_pred CCCCCCCcccCCccee
Q 040947 3 FTGTLDKCKACDKTVY 18 (210)
Q Consensus 3 ~~~~~~~C~~C~~~I~ 18 (210)
|.+....|..|...|.
T Consensus 176 ~~~~i~~C~iC~~iv~ 191 (238)
T 3nw0_A 176 YPDAVKICNICHSLLI 191 (238)
T ss_dssp CTTTCCBCTTTCSBCS
T ss_pred cCCCCCcCcchhhHHh
Confidence 4455677888877775
No 177
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=33.00 E-value=38 Score=22.48 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCccccccceeecCceeEecCccccccccccCCCCCcCCCCCeeecCCeeecHh
Q 040947 103 QDKCAACEKTVYPLEKVTMEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKH 156 (210)
Q Consensus 103 ~~~C~~C~~~I~~~e~v~~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~ 156 (210)
.-+|.-|.+.+.+...|..-...-|+=||-|+. ..|.. ....+.+||..
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr--~sIk~---q~~~~EvyCPS 63 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR--ESIKA---QGATGEVYCPS 63 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH--HHHHH---HHSSSCCCCTT
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccH--HHHHh---cCCCCcEECCC
Confidence 368888998887666677777888888998864 22221 11345667753
No 178
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=31.66 E-value=53 Score=20.86 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=19.8
Q ss_pred cccCCCCCcCCCC-CeeecCCeeecHhHHHh
Q 040947 131 FRCAHGGCPLTHS-SYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 131 F~C~~C~~~l~~~-~f~~~dg~~yC~~c~~~ 160 (210)
.+|+.|++.-..- .+..-.|...|..|-..
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHH
Confidence 3689999876533 33333566789888754
No 179
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=31.56 E-value=40 Score=20.59 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=27.5
Q ss_pred CccccccceeecCceeEecC-----ccccccccccCCCCCcCCCCCeeecCCeeecHhHHHh
Q 040947 104 DKCAACEKTVYPLEKVTMEG-----DCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g-----~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~ 160 (210)
..| .|+++-. +++|.-.+ ..||..|.. |... ..|.-||..|-.+
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg-------l~~~----p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQE 59 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC-
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC-------CCcC----CCCCEECcCccCc
Confidence 456 7988754 66665544 568988864 3221 1367889988654
No 180
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=30.97 E-value=10 Score=29.30 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=19.3
Q ss_pred cccccCCCCCcCCCCCeeecCCeeecHhHHHhh
Q 040947 129 TCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQL 161 (210)
Q Consensus 129 ~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~ 161 (210)
.=.+|..||..+... |+.+|..|+.+.
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~~~ 188 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQGGS 188 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHTTC
T ss_pred CCEECCcCCCChhhC------CCcCCccccCCC
Confidence 335688888765432 889999998753
No 181
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=30.92 E-value=59 Score=19.37 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=19.3
Q ss_pred cccCCCCCcCCCC-CeeecCCeeecHhHHHh
Q 040947 131 FRCAHGGCPLTHS-SYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 131 F~C~~C~~~l~~~-~f~~~dg~~yC~~c~~~ 160 (210)
.+|+.|++.-..- .+..-.|...|..|-..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 3689999876533 33333566778888654
No 182
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.76 E-value=34 Score=19.81 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=23.3
Q ss_pred cccccccCCCCCCCeeccCCeeeccchHHHhhh
Q 040947 35 FKCSHCKGTLVMSNYSSMDGVLYCKPHFEQLFK 67 (210)
Q Consensus 35 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~ 67 (210)
+.|..|...+... ....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHHHH
Confidence 6778887777653 3345788899999988753
No 183
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=29.54 E-value=21 Score=24.35 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=8.8
Q ss_pred Cccccccceee
Q 040947 104 DKCAACEKTVY 114 (210)
Q Consensus 104 ~~C~~C~~~I~ 114 (210)
..|+.|...+.
T Consensus 26 ~~C~ICl~~~~ 36 (114)
T 1v87_A 26 EDCIICMEKLA 36 (114)
T ss_dssp CEETTTTEETT
T ss_pred CcCccCChhhc
Confidence 57999988875
No 184
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.24 E-value=40 Score=20.53 Aligned_cols=44 Identities=25% Similarity=0.601 Sum_probs=28.0
Q ss_pred CccccccceeecCceeEecC-----ccccccccccCCCCCcCCCCCeeecCCeeecHhHHHh
Q 040947 104 DKCAACEKTVYPLEKVTMEG-----DCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQ 160 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g-----~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~ 160 (210)
..| .|+++-. +++|.-.+ ..||..|.. |... ..|.-||..|-.+
T Consensus 10 ~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg-------l~~~----p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 10 TYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD-------LTTK----PKGKWFCPRCVQE 58 (59)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHCC
T ss_pred cEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC-------cccC----CCCCEECcCccCc
Confidence 456 7998754 66666554 578988764 3221 1367789888643
No 185
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.22 E-value=1.3e+02 Score=19.98 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=31.7
Q ss_pred CccccccceeecCceeE--ecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhc
Q 040947 104 DKCAACEKTVYPLEKVT--MEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFM 163 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~ 163 (210)
..|..|++.-....+|. .-++.||..|+. -+|. .+..|.-||..|..+..+
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-----Ppl~----~~P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-----PPLP----EIPRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSS-----SCCS----SCCSSCCCCHHHHHHHHS
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCC-----CCcc----cCCCCCcCCccCcCcccc
Confidence 57999987653333443 235679988763 2232 123577899999876543
No 186
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.47 E-value=11 Score=25.89 Aligned_cols=39 Identities=15% Similarity=0.416 Sum_probs=21.8
Q ss_pred CCcccCCcceecceeEeeCCccccCCCcccccccCCCCCCCeeccCCeeeccchHHHh
Q 040947 8 DKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTLVMSNYSSMDGVLYCKPHFEQL 65 (210)
Q Consensus 8 ~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 65 (210)
..|+.|+.++. ..|..| .|..|++.+ ....||.+|.+.+
T Consensus 33 ~~CP~Cq~eL~------~~g~~~-----hC~~C~~~f--------~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLD------QDNGHA-----RCRSCGEFI--------EMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEE------EETTEE-----EETTTCCEE--------EEEEECTTTCSBC
T ss_pred ccCccCCCcce------ecCCEE-----ECccccchh--------hccccCcchhhHH
Confidence 46777776653 123333 366665532 3357788777654
No 187
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=26.86 E-value=54 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=22.4
Q ss_pred cccccccccCCCCC-cCCCCCeeec--CCeeecHhHHHhhh
Q 040947 125 CFHKTCFRCAHGGC-PLTHSSYAAL--DGVLYCKHHFAQLF 162 (210)
Q Consensus 125 ~~H~~CF~C~~C~~-~l~~~~f~~~--dg~~yC~~c~~~~f 162 (210)
.+|+. +.|..|+. +|.+.+|.-. .+--+|..||....
T Consensus 27 ~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~ 66 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC 66 (98)
T ss_dssp SSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS
T ss_pred cccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC
Confidence 35554 56666665 4555444322 34568999998753
No 188
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.96 E-value=48 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.717 Sum_probs=13.2
Q ss_pred ccccccCCCCCCCeeccCCeeeccch
Q 040947 36 KCSHCKGTLVMSNYSSMDGVLYCKPH 61 (210)
Q Consensus 36 ~C~~C~~~L~~~~f~~~~g~~yC~~c 61 (210)
+|..|++.|.-..|.=+=|..||..+
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 17 RCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred cChhhCCccCccCEEeecCCEecccc
Confidence 34455555554444444555666543
No 189
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=24.92 E-value=38 Score=21.71 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=16.8
Q ss_pred ccccccCCCCCCCeeccCCee-eccchHHHh
Q 040947 36 KCSHCKGTLVMSNYSSMDGVL-YCKPHFEQL 65 (210)
Q Consensus 36 ~C~~C~~~L~~~~f~~~~g~~-yC~~cy~~~ 65 (210)
.|..|...+... .+..=|.. +|..|..+.
T Consensus 20 ~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~ 49 (79)
T 2yho_A 20 LCMVCCEEEINS-TFCPCGHTVCCESCAAQL 49 (79)
T ss_dssp BCTTTSSSBCCE-EEETTCBCCBCHHHHTTC
T ss_pred EeEEeCcccCcE-EEECCCCHHHHHHHHHhc
Confidence 466665555442 23345565 788887643
No 190
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.90 E-value=50 Score=20.80 Aligned_cols=24 Identities=17% Similarity=0.553 Sum_probs=10.7
Q ss_pred cccccCCCCCCCeeccCCeeeccc
Q 040947 37 CSHCKGTLVMSNYSSMDGVLYCKP 60 (210)
Q Consensus 37 C~~C~~~L~~~~f~~~~g~~yC~~ 60 (210)
|..|++.|.-..|.=+=|..||..
T Consensus 18 C~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 18 CFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CTTTCCCCTTSCEECTTSCEECSS
T ss_pred ChhhCCcccccCeEeecCCEeccc
Confidence 334554444333333444555543
No 191
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.18 E-value=98 Score=18.54 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=29.8
Q ss_pred CccccccceeecCceeE--ecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhhhc
Q 040947 104 DKCAACEKTVYPLEKVT--MEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQLFM 163 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~f~ 163 (210)
..|..|++. +++|. .-.+.||..|..= +|.. ...|.-||..|-.+...
T Consensus 6 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~p-----pl~~----~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDTCSRVYHLDCLDP-----PLKT----IPKGMWICPRCQDQMLK 55 (60)
T ss_dssp SSCTTTCCC---SSCEECSSSSCEECGGGSSS-----CCSS----CCCSCCCCHHHHHHHHH
T ss_pred CCCcCCCCC---CcEEEcCCCCcCEECCcCCC-----CcCC----CCCCceEChhccChhhc
Confidence 578888873 45543 3357789887531 2322 23467899999776543
No 192
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.97 E-value=38 Score=22.42 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=32.0
Q ss_pred Cccccccceeec--CceeE--ecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhh
Q 040947 104 DKCAACEKTVYP--LEKVT--MEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQL 161 (210)
Q Consensus 104 ~~C~~C~~~I~~--~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~ 161 (210)
..|.+|+..-.. +++|. .-++.||..|+. -+|......+.+|.-||..|-.+.
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK-----PQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-----SCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-----CcccccccCCCCCCeeCccccchh
Confidence 579999876432 23332 236789988753 223321122456888999997764
No 193
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.02 E-value=40 Score=15.29 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=8.4
Q ss_pred cccCCCCCcCCC
Q 040947 131 FRCAHGGCPLTH 142 (210)
Q Consensus 131 F~C~~C~~~l~~ 142 (210)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 568888877653
No 194
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.16 E-value=1.5e+02 Score=25.28 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=11.3
Q ss_pred eeecHhHHHhhhcCCC
Q 040947 151 VLYCKHHFAQLFMEKG 166 (210)
Q Consensus 151 ~~yC~~c~~~~f~~k~ 166 (210)
+.||..|-..++++..
T Consensus 115 r~FC~~Ci~~n~g~~~ 130 (386)
T 2pv0_B 115 RCYCFECVDSLVGPGT 130 (386)
T ss_dssp CEECHHHHHHHTCTTH
T ss_pred cchHHHHHHHhcChhH
Confidence 4578888877776654
No 195
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.98 E-value=30 Score=19.95 Aligned_cols=12 Identities=25% Similarity=0.739 Sum_probs=9.5
Q ss_pred CCcccCCcceec
Q 040947 8 DKCKACDKTVYV 19 (210)
Q Consensus 8 ~~C~~C~~~I~~ 19 (210)
.+|..|++||.-
T Consensus 18 RvC~~CgkPi~l 29 (44)
T 2lo3_A 18 RVCEKCGKPLAL 29 (44)
T ss_dssp EECTTTCCEEET
T ss_pred hhhcccCCcchH
Confidence 478999999863
No 196
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.77 E-value=38 Score=27.41 Aligned_cols=19 Identities=11% Similarity=0.415 Sum_probs=12.9
Q ss_pred CccccccceeecCceeEecCcc
Q 040947 104 DKCAACEKTVYPLEKVTMEGDC 125 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~~ 125 (210)
.-|.+|+.+|. .+...++.
T Consensus 241 ~pC~~CG~~I~---~~~~~gR~ 259 (268)
T 1k82_A 241 EPCRVCGTPIV---ATKHAQRA 259 (268)
T ss_dssp SBCTTTCCBCE---EEEETTEE
T ss_pred CCCCCCCCEee---EEEECCCc
Confidence 56999999986 34444543
No 197
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.77 E-value=38 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=15.6
Q ss_pred CCcccCCcceecce---eEeeCCcccc
Q 040947 8 DKCKACDKTVYVVD---MLSLEGMPYH 31 (210)
Q Consensus 8 ~~C~~C~~~I~~~~---~v~~~g~~~H 31 (210)
..|..|+..|+++. +|..+|+.|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQ 30 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEE
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEE
Confidence 56888888888764 3455555554
No 198
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=20.61 E-value=87 Score=19.78 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=29.5
Q ss_pred Ccccccccee--ecCceeE--ecCccccccccccCCCCCcCCCCCeeecCCeeecHhHHHhh
Q 040947 104 DKCAACEKTV--YPLEKVT--MEGDCFHKTCFRCAHGGCPLTHSSYAALDGVLYCKHHFAQL 161 (210)
Q Consensus 104 ~~C~~C~~~I--~~~e~v~--~~g~~~H~~CF~C~~C~~~l~~~~f~~~dg~~yC~~c~~~~ 161 (210)
..|..|++.- ..+++|. .-+..||..|+.=. .+.+|.-||..|..+.
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----------~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----------YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----------SCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----------cCCCCCcCCccCcCcC
Confidence 6899998763 2233343 23567888886421 1335788999997754
No 199
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=20.49 E-value=34 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.471 Sum_probs=18.3
Q ss_pred CCCcccCCcceecce---eEeeCCccccC
Q 040947 7 LDKCKACDKTVYVVD---MLSLEGMPYHK 32 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~---~v~~~g~~~H~ 32 (210)
...|..|+..|+++. +|..+|+.|+.
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~F 33 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFFF 33 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEEE
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEEE
Confidence 457999999999874 35556666653
No 200
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.47 E-value=34 Score=27.76 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=12.5
Q ss_pred CccccccceeecCceeEecCc
Q 040947 104 DKCAACEKTVYPLEKVTMEGD 124 (210)
Q Consensus 104 ~~C~~C~~~I~~~e~v~~~g~ 124 (210)
.-|.+|+.+|. .+...++
T Consensus 246 ~pC~~CG~~I~---~~~~~gR 263 (273)
T 3u6p_A 246 NPCKRCGTPIE---KTVVAGR 263 (273)
T ss_dssp SBCTTTCCBCE---EEEETTE
T ss_pred CCCCCCCCeEE---EEEECCC
Confidence 57999999986 3444444
No 201
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=20.33 E-value=26 Score=32.94 Aligned_cols=33 Identities=15% Similarity=0.540 Sum_probs=21.2
Q ss_pred CCCcccCCcceecceeEeeCCccccCCCcccccccCCC
Q 040947 7 LDKCKACDKTVYVVDMLSLEGMPYHKSCFKCSHCKGTL 44 (210)
Q Consensus 7 ~~~C~~C~~~I~~~~~v~~~g~~~H~~CF~C~~C~~~L 44 (210)
..+|..|-+.|. .-.++.|+--=-.|+.||-++
T Consensus 106 ~a~C~~Cl~e~~-----dp~~rry~ypF~nCt~CGPR~ 138 (772)
T 4g9i_A 106 IAICDDCLRELF-----DPTNKRYMYPFIVCTNCGPRF 138 (772)
T ss_dssp CCCCHHHHHHHS-----STTSTTTTCTTCCCTTSSCCG
T ss_pred hhhhHHHHHHhc-----CCCCCccCCccccCCCCCchh
Confidence 456777766654 334677776667778886643
No 202
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=20.23 E-value=36 Score=25.40 Aligned_cols=24 Identities=4% Similarity=0.061 Sum_probs=15.4
Q ss_pred CCcccCCcceecce---eEeeCCcccc
Q 040947 8 DKCKACDKTVYVVD---MLSLEGMPYH 31 (210)
Q Consensus 8 ~~C~~C~~~I~~~~---~v~~~g~~~H 31 (210)
..|..|+..|+++. +|..+|+.|+
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~ 30 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIFR 30 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEEE
T ss_pred eEecCcCCcccCCCCeEEEecCCCEEE
Confidence 46888888888764 3444555544
No 203
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.15 E-value=68 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.660 Sum_probs=14.6
Q ss_pred ccccccCCCCCCCeeccCCeeeccch
Q 040947 36 KCSHCKGTLVMSNYSSMDGVLYCKPH 61 (210)
Q Consensus 36 ~C~~C~~~L~~~~f~~~~g~~yC~~c 61 (210)
+|..|++.+.-..|.=+=|..||..+
T Consensus 27 RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 27 RCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp BCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred cchhhcCcccccceEeccCCEecccc
Confidence 34466666655455555566666544
No 204
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.07 E-value=42 Score=15.43 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=8.7
Q ss_pred cccCCCCCcCCC
Q 040947 131 FRCAHGGCPLTH 142 (210)
Q Consensus 131 F~C~~C~~~l~~ 142 (210)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888887653
Done!