Query 040948
Match_columns 286
No_of_seqs 143 out of 1424
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 13:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.3E-32 2.9E-37 240.8 8.6 146 7-155 1-168 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.1E-29 2.4E-34 194.5 4.9 73 8-84 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 99.9 8.2E-28 1.8E-32 186.6 6.1 77 8-87 1-77 (83)
4 smart00432 MADS MADS domain. 99.9 1.8E-26 3.9E-31 168.3 5.7 59 8-68 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 2.4E-26 5.2E-31 167.7 4.5 59 8-68 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 3.5E-25 7.5E-30 157.0 2.4 51 15-67 1-51 (51)
7 KOG0015 Regulator of arginine 99.7 4.4E-18 9.6E-23 157.5 3.6 69 4-76 59-127 (338)
8 COG5068 ARG80 Regulator of arg 99.3 2.2E-12 4.9E-17 124.3 4.3 67 6-76 80-146 (412)
9 PF01486 K-box: K-box region; 98.3 1.5E-06 3.3E-11 69.3 6.9 64 97-161 12-75 (100)
10 PRK13729 conjugal transfer pil 82.9 39 0.00084 34.4 14.1 25 245-269 212-240 (475)
11 PF10491 Nrf1_DNA-bind: NLS-bi 65.9 22 0.00047 32.5 6.6 46 35-82 36-88 (214)
12 KOG4252 GTP-binding protein [S 63.4 30 0.00065 31.4 6.9 29 46-82 90-118 (246)
13 PF06698 DUF1192: Protein of u 61.3 13 0.00028 27.2 3.6 35 122-157 12-46 (59)
14 PRK04098 sec-independent trans 52.3 19 0.00042 31.4 3.8 95 50-159 14-108 (158)
15 PF15079 DUF4546: Domain of un 38.9 89 0.0019 27.8 5.8 30 131-161 79-108 (205)
16 PF14282 FlxA: FlxA-like prote 37.8 1.9E+02 0.0041 23.2 7.3 54 107-163 22-75 (106)
17 KOG4311 Histidinol dehydrogena 35.6 78 0.0017 30.3 5.2 130 25-159 182-339 (359)
18 PF07106 TBPIP: Tat binding pr 35.5 1.9E+02 0.004 24.7 7.4 30 130-160 108-137 (169)
19 KOG1029 Endocytic adaptor prot 35.0 2.6E+02 0.0057 30.7 9.4 37 15-53 430-467 (1118)
20 COG0663 PaaY Carbonic anhydras 34.7 18 0.0004 32.1 0.9 71 180-252 34-121 (176)
21 PHA03162 hypothetical protein; 33.3 3.1E+02 0.0066 23.4 8.4 56 99-155 15-74 (135)
22 PF11285 DUF3086: Protein of u 33.0 2.1E+02 0.0045 27.2 7.5 61 99-161 13-73 (283)
23 PF07106 TBPIP: Tat binding pr 32.9 2.4E+02 0.0052 24.1 7.6 55 102-158 114-168 (169)
24 PF05812 Herpes_BLRF2: Herpesv 30.8 3.2E+02 0.0069 22.8 8.0 56 99-155 5-64 (118)
25 PHA02592 52 DNA topisomerase I 30.6 2.6E+02 0.0056 28.3 8.4 49 28-83 279-327 (439)
26 PF10584 Proteasome_A_N: Prote 30.6 15 0.00032 22.0 -0.2 11 53-63 5-15 (23)
27 PHA03155 hypothetical protein; 30.1 3.2E+02 0.007 22.7 8.3 56 99-155 10-65 (115)
28 KOG1318 Helix loop helix trans 29.7 5.6E+02 0.012 25.8 10.4 17 30-46 242-258 (411)
29 PF05549 Allexi_40kDa: Allexiv 27.5 5.4E+02 0.012 24.4 10.0 81 71-161 60-140 (271)
30 PRK09458 pspB phage shock prot 27.4 1E+02 0.0023 23.7 3.8 34 126-161 31-64 (75)
31 PF07956 DUF1690: Protein of U 24.4 4.4E+02 0.0096 22.4 9.0 39 74-113 13-51 (142)
32 PF06147 DUF968: Protein of un 23.7 36 0.00079 30.5 0.9 13 272-284 125-137 (200)
33 PF06667 PspB: Phage shock pro 23.6 1.4E+02 0.0031 22.8 4.0 32 127-160 32-63 (75)
34 PF09278 MerR-DNA-bind: MerR, 23.6 1.4E+02 0.003 21.0 3.8 21 141-161 38-58 (65)
35 PRK10191 putative acyl transfe 23.5 49 0.0011 28.1 1.6 29 225-253 95-125 (146)
36 TIGR01172 cysE serine O-acetyl 23.3 46 0.001 28.4 1.4 13 240-252 133-145 (162)
37 PF07851 TMPIT: TMPIT-like pro 23.1 6.2E+02 0.013 24.7 9.2 15 71-85 5-19 (330)
38 PF06008 Laminin_I: Laminin Do 23.0 2.7E+02 0.0058 25.5 6.6 30 125-155 114-143 (264)
39 COG4575 ElaB Uncharacterized c 22.6 4.3E+02 0.0092 21.6 6.7 30 129-159 32-61 (104)
40 PF00948 Flavi_NS1: Flavivirus 22.3 46 0.00099 32.7 1.3 32 253-285 257-297 (356)
41 TIGR01010 BexC_CtrB_KpsE polys 22.2 6.7E+02 0.015 23.9 9.4 95 63-159 137-234 (362)
42 PF14009 DUF4228: Domain of un 22.1 99 0.0022 25.7 3.2 35 47-82 12-46 (181)
43 PF10112 Halogen_Hydrol: 5-bro 21.6 67 0.0014 28.2 2.1 54 29-84 92-150 (199)
44 TIGR03007 pepcterm_ChnLen poly 21.0 6.3E+02 0.014 25.1 9.2 51 63-118 128-182 (498)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.97 E-value=1.3e-32 Score=240.80 Aligned_cols=146 Identities=25% Similarity=0.320 Sum_probs=106.9
Q ss_pred CCccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhcccch
Q 040948 7 QVKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELREMP 86 (286)
Q Consensus 7 MgRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~e~~ 86 (286)
|||+||+|++|+| +++|+|||+|||.||||||+||||||||+||||||||+|++|.|+++..+|+.|++||....+.+
T Consensus 1 M~R~ki~i~~Ien--~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 78 (195)
T KOG0014|consen 1 MGRGKIEIKRIEN--ESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS 78 (195)
T ss_pred CCCCccceeeccc--cchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence 9999999999999 99999999999999999999999999999999999999999877775345999999999987765
Q ss_pred hhhhhhHHHHHHHHH------------------HHHHHHHHHHHHHHHHH---HHHhcccCCCCCCCH-HHHhcchHHHH
Q 040948 87 VLMKKAEQRLDLLEL------------------FESKKQKLMEKKKAFVE---KMFSILETKIDEASS-VEELGVVYNKV 144 (286)
Q Consensus 87 ~skk~~~qe~~l~e~------------------l~~e~~KL~Kk~kel~~---~~~~~~g~~Ld~LS~-eEL~eL~e~~L 144 (286)
..++...++.++... ...+...+++..+.+.. ..+++.+.++.+++. .+|..+ +..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~-~~~l 157 (195)
T KOG0014|consen 79 RKKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSL-ESQL 157 (195)
T ss_pred hcccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcch-hhHH
Confidence 544444444433211 01111111121112211 144566788888888 888888 7777
Q ss_pred HHHHHHHHHHH
Q 040948 145 ESKLASMRETI 155 (286)
Q Consensus 145 E~kL~~Ir~Rk 155 (286)
+..+..++.+.
T Consensus 158 ~~~~~~~~~~~ 168 (195)
T KOG0014|consen 158 ESSLHNSRSSK 168 (195)
T ss_pred HHhhcCCCCCC
Confidence 77666555544
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.1e-29 Score=194.50 Aligned_cols=73 Identities=33% Similarity=0.586 Sum_probs=70.6
Q ss_pred CccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhccc
Q 040948 8 VKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELRE 84 (286)
Q Consensus 8 gRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~e 84 (286)
||+||+|++|++ +.+|++||+|||.||||||+||||||||+||+|||||+|++++|++| ++++||+||++.+.
T Consensus 1 gr~ki~i~~i~~--~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~--s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIEN--STNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP--SMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecC--ccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCC--CHHHHHHHHHhccc
Confidence 899999999999 99999999999999999999999999999999999999999999997 78999999998854
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=8.2e-28 Score=186.60 Aligned_cols=77 Identities=31% Similarity=0.535 Sum_probs=70.3
Q ss_pred CccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhcccchh
Q 040948 8 VKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELREMPV 87 (286)
Q Consensus 8 gRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~e~~~ 87 (286)
||+||+|++|++ +.+|++||+|||.||||||+||||||||+||+|||||+|++++|+++ ..++.+|++|...++.++
T Consensus 1 gr~Ki~i~~I~~--~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 77 (83)
T cd00266 1 GRKKIKIKRIEN--KKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPS-SEVEGVISRFEVLSALER 77 (83)
T ss_pred CCccceeEEeec--cchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCc-HHHHHHHHHHhhcCHhhh
Confidence 799999999999 99999999999999999999999999999999999999987776665 239999999999876543
No 4
>smart00432 MADS MADS domain.
Probab=99.93 E-value=1.8e-26 Score=168.28 Aligned_cols=59 Identities=41% Similarity=0.654 Sum_probs=57.0
Q ss_pred CccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCC
Q 040948 8 VKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPED 68 (286)
Q Consensus 8 gRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp 68 (286)
||+||+|++|++ +++|++||+|||.||+|||+||||||||+||+|||||+|++++|.+|
T Consensus 1 gR~Ki~i~~I~~--~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIEN--KTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeC--cchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 899999999999 99999999999999999999999999999999999999999988764
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.92 E-value=2.4e-26 Score=167.67 Aligned_cols=59 Identities=37% Similarity=0.562 Sum_probs=57.3
Q ss_pred CccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCC
Q 040948 8 VKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPED 68 (286)
Q Consensus 8 gRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp 68 (286)
||+||+|++|++ +..|++||+|||.||+|||+||||||||+||+|||||+|++++|+++
T Consensus 1 gr~Ki~i~~I~~--~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIEN--KTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeC--cchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 799999999999 99999999999999999999999999999999999999999999874
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.90 E-value=3.5e-25 Score=156.98 Aligned_cols=51 Identities=49% Similarity=0.756 Sum_probs=47.0
Q ss_pred EEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCC
Q 040948 15 KLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPE 67 (286)
Q Consensus 15 K~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpS 67 (286)
|+|+| ++.|++||+|||.||||||+||||||||+||+|||+|+|++++|||
T Consensus 1 K~I~n--~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIEN--KSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SS--HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccc--hhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 58999 9999999999999999999999999999999999999999999997
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.70 E-value=4.4e-18 Score=157.52 Aligned_cols=69 Identities=33% Similarity=0.375 Sum_probs=63.3
Q ss_pred cccCCccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhH
Q 040948 4 ETTQVKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMI 76 (286)
Q Consensus 4 ~~~MgRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VI 76 (286)
+++-||+||+|++|+| +..|.+||+|||.|+||||+|||||+|.+|-|+|.|+.|-+|+|..| ..+.||
T Consensus 59 k~~~gr~kik~eyIen--K~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTp--KLep~i 127 (338)
T KOG0015|consen 59 KKTTGRVKIKMEYIEN--KLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATP--KLEPMI 127 (338)
T ss_pred ccccceeeccchhhcc--cceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccc--cccccc
Confidence 3455899999999999 99999999999999999999999999999999999999999999997 555554
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.28 E-value=2.2e-12 Score=124.35 Aligned_cols=67 Identities=28% Similarity=0.425 Sum_probs=62.6
Q ss_pred cCCccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhH
Q 040948 6 TQVKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMI 76 (286)
Q Consensus 6 ~MgRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VI 76 (286)
.|||+|+.|.+|++ +.+|.|||+|||.||+|||.||++|.|.+|.++|.+..|++++|..| ..+.|+
T Consensus 80 ~~~~~~~~is~i~n--k~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp--~~e~v~ 146 (412)
T COG5068 80 SVTGRKIGISYITN--KTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP--KLESVV 146 (412)
T ss_pred ccccccCCcccccC--cccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC--cccccc
Confidence 58999999999999 99999999999999999999999999999999999999999999997 444444
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.33 E-value=1.5e-06 Score=69.33 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q 040948 97 DLLELFESKKQKLMEKKKAFVEKMFSILETKIDEASSVEELGVVYNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 97 ~l~e~l~~e~~KL~Kk~kel~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
.-.+.+..+..+|+++++.++..++++.|++|++|+++||..| +..|+.+|..||+|+..+..+
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~L-E~~Le~aL~~VR~rK~~~l~~ 75 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQL-EQQLESALKRVRSRKDQLLME 75 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHH-HHhhhhhHHHHHHHHHHHHHH
Confidence 4466788899999999999999999999999999999999999 999999999999999998765
No 10
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=82.92 E-value=39 Score=34.43 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=19.1
Q ss_pred ccccCCCCCCce----eecCCcchhhhcc
Q 040948 245 FMLPDNSLLPGY----VHANKGAWAQENF 269 (286)
Q Consensus 245 ~~~~~~~~~~~~----~~~~~~~~~~~~~ 269 (286)
.+||.+|...++ +.||-|-.||.|-
T Consensus 212 ~YiPsgSf~~avll~G~DA~tg~~aq~nP 240 (475)
T PRK13729 212 PYIPSGSFAKAMLIEGADANASVTGNEST 240 (475)
T ss_pred ceeCCCCeEEEEEecccccCccccccCCC
Confidence 588999984433 6889998888874
No 11
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=65.88 E-value=22 Score=32.46 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=38.7
Q ss_pred hHHHH----HHHHhhhccCcEEEEEecCC---CCeeecCCCcchhhhhHHHhhhc
Q 040948 35 TLKNK----AHELETLCDVMVCLVCYGPD---GKVETWPEDKTKVNDMIDKYKEL 82 (286)
Q Consensus 35 GL~KK----A~ELStLCdveV~lIVfSp~---Gk~~~wpSp~~sVe~VIdRY~~~ 82 (286)
-|+.| ..|++|-+|-+|+|+|.+|+ +...+|+.. -.+.||..|+..
T Consensus 36 rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~--pL~~vv~~~~~~ 88 (214)
T PF10491_consen 36 RLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAA--PLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecch--hHHHHHHHHHHH
Confidence 35555 47999999999999999996 467889994 899999999876
No 12
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=63.44 E-value=30 Score=31.35 Aligned_cols=29 Identities=3% Similarity=0.244 Sum_probs=22.6
Q ss_pred hccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhc
Q 040948 46 LCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKEL 82 (286)
Q Consensus 46 LCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~ 82 (286)
--||.+||+|||..++ .+.+.+++=|.+.
T Consensus 90 yrgaqa~vLVFSTTDr--------~SFea~~~w~~kv 118 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDR--------YSFEATLEWYNKV 118 (246)
T ss_pred hccccceEEEEecccH--------HHHHHHHHHHHHH
Confidence 4589999999998753 5677888877765
No 13
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=61.31 E-value=13 Score=27.22 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=29.7
Q ss_pred hcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHH
Q 040948 122 SILETKIDEASSVEELGVVYNKVESKLASMRETIEL 157 (286)
Q Consensus 122 ~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~ 157 (286)
+..|.+|+.||++||.+- ...|+.-+.+++.-+..
T Consensus 12 ~~ig~dLs~lSv~EL~~R-Ia~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEER-IALLEAEIARLEAAIAK 46 (59)
T ss_pred cccCCCchhcCHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 356899999999999999 89999888888777654
No 14
>PRK04098 sec-independent translocase; Provisional
Probab=52.32 E-value=19 Score=31.40 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=43.5
Q ss_pred cEEEEEecCCCCeeecCCCcchhhhhHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 040948 50 MVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELREMPVLMKKAEQRLDLLELFESKKQKLMEKKKAFVEKMFSILETKID 129 (286)
Q Consensus 50 eV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~e~~~skk~~~qe~~l~e~l~~e~~KL~Kk~kel~~~~~~~~g~~Ld 129 (286)
=||||||+|..=|. .. ..+-..|.+|++....- +...+++..+. .+.++..+.++.+......++ .
T Consensus 14 vVaLlvfGP~KLP~-~~---r~lGk~ir~~K~~~~~~--k~~l~~Ei~~~-elk~e~~k~k~~l~~~~~~l~-------~ 79 (158)
T PRK04098 14 VVAIIFLGPDKLPQ-AM---VDIAKFFKAVKKTINDA--KSTLDKEINIE-EIKEEALKYKKEFESAVESLK-------K 79 (158)
T ss_pred HHHHhhcCchHHHH-HH---HHHHHHHHHHHHHHHHH--HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH-------h
Confidence 36889999973222 11 24556666666653211 11122222111 122222233222222222222 2
Q ss_pred CCCHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 040948 130 EASSVEELGVVYNKVESKLASMRETIELAI 159 (286)
Q Consensus 130 ~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~ 159 (286)
.++.++|.++ ...+....+.+++-+..+.
T Consensus 80 ~~~~eel~~~-~~~~~~~~~~~~~~~~~~~ 108 (158)
T PRK04098 80 KLKFEELDDL-KITAENEIKSIQDLLQDYK 108 (158)
T ss_pred ccChHHHHHH-hhhhhhcchhHHHHHhhhh
Confidence 3777888888 6666665555555444443
No 15
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=38.90 E-value=89 Score=27.79 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=24.7
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q 040948 131 ASSVEELGVVYNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 131 LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
-+.+.|.+| .+.+.+..+.+.++++-|..-
T Consensus 79 KDFDKL~EF-VEIMKeMQkDMDEKMDvLiNi 108 (205)
T PF15079_consen 79 KDFDKLHEF-VEIMKEMQKDMDEKMDVLINI 108 (205)
T ss_pred hhHHHHHHH-HHHHHHHHHhHHHhhhHHhhc
Confidence 346789999 889999999999999888754
No 16
>PF14282 FlxA: FlxA-like protein
Probab=37.79 E-value=1.9e+02 Score=23.16 Aligned_cols=54 Identities=7% Similarity=0.190 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHHhhh
Q 040948 107 QKLMEKKKAFVEKMFSILETKIDEASSVEELGVVYNKVESKLASMRETIELAIIEEQ 163 (286)
Q Consensus 107 ~KL~Kk~kel~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~~~ 163 (286)
+.|++.++.+.+.+..+-.. .+++.++-..- ...|..-|..+...|..|..+..
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~~q-~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQD--SDLDAEQKQQQ-IQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcc--cCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333221 56778888888 88888888888888888876643
No 17
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=35.61 E-value=78 Score=30.27 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=70.4
Q ss_pred cchhhhhhhhhHHHH---------HHHHhhhccCcEEEEEecCCCC-------eeecCCCc---chhhhhHHHhhh-ccc
Q 040948 25 RQGNFEKRKETLKNK---------AHELETLCDVMVCLVCYGPDGK-------VETWPEDK---TKVNDMIDKYKE-LRE 84 (286)
Q Consensus 25 RqvTFsKRR~GL~KK---------A~ELStLCdveV~lIVfSp~Gk-------~~~wpSp~---~sVe~VIdRY~~-~~e 84 (286)
|-|-|++-|..|.-| .-++.|-||-|.-..+.-++|. .+.|+... -+.+.||.+-++ .|+
T Consensus 182 ~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~~aPe 261 (359)
T KOG4311|consen 182 KGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKETAPE 261 (359)
T ss_pred cceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhhcCCc
Confidence 444455555536544 4588999999988877777764 45566531 256777754444 444
Q ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhccc-CCCCCCCHHHHhcchHHHHHHHHHHHHHHHH
Q 040948 85 MPVLMKKA-EQRLDLLELFESKKQKLMEKKK------AFVEKMFSILE-TKIDEASSVEELGVVYNKVESKLASMRETIE 156 (286)
Q Consensus 85 ~~~skk~~-~qe~~l~e~l~~e~~KL~Kk~k------el~~~~~~~~g-~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~ 156 (286)
..= ..++ .....|...+.+|.++|-.-.. +|...+|+.+- .--.+.+++|. ...|+.+-+++..|+-
T Consensus 262 eSy-TrRLftD~aLL~aKI~EEAeELc~a~~k~e~~wEmADl~YfA~~~lv~~gVsl~Dv----~~~LnmkhrKvtrrkG 336 (359)
T KOG4311|consen 262 ESY-TRRLFTDDALLCAKIREEAEELCRALEKNETPWEMADLLYFAMVLLVKRGVSLEDV----LEVLNMKHRKVTRRKG 336 (359)
T ss_pred hhh-HHHhhCChHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHhcCCcHHHH----HHHhhhHHHhHhhhcc
Confidence 311 1121 1112334445555555532211 23344554332 12245666655 6778888888888876
Q ss_pred HHH
Q 040948 157 LAI 159 (286)
Q Consensus 157 ~L~ 159 (286)
..+
T Consensus 337 dak 339 (359)
T KOG4311|consen 337 DAK 339 (359)
T ss_pred hhh
Confidence 655
No 18
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.55 E-value=1.9e+02 Score=24.72 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=19.1
Q ss_pred CCCHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 040948 130 EASSVEELGVVYNKVESKLASMRETIELAII 160 (286)
Q Consensus 130 ~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~ 160 (286)
.++.+||... ...|+..+..+.+|+..|..
T Consensus 108 ~~t~~el~~~-i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 108 EPTNEELREE-IEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4456666666 66666666666666666664
No 19
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.96 E-value=2.6e+02 Score=30.65 Aligned_cols=37 Identities=30% Similarity=0.323 Sum_probs=28.8
Q ss_pred EEeccCCCCccchhhhhhhhhHHHHHHHHh-hhccCcEEE
Q 040948 15 KLIEEHGGNSRQGNFEKRKETLKNKAHELE-TLCDVMVCL 53 (286)
Q Consensus 15 K~Ien~~~~sRqvTFsKRR~GL~KKA~ELS-tLCdveV~l 53 (286)
++|-- ..+|..+..-|-..|=-|..+|+ -||||++-+
T Consensus 430 e~iv~--~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 430 EWIVY--LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI 467 (1118)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 44555 56777888888888888999998 589999874
No 20
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=34.68 E-value=18 Score=32.06 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=40.4
Q ss_pred CCCcCCccc----ccCCCCCCCCCCCCCccccccCCCCCCcccCCCC-----------CCCCCceecC-CCCccc-cccC
Q 040948 180 NNLLLSDYV----SSSSNNNNNNNDFGRHESFLFPPSQNHQINGGEN-----------GNIGDNVMLP-DNNFLP-SEIG 242 (286)
Q Consensus 180 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~-~~~~ 242 (286)
++.-.|+.- ...+-..|.+.+-|--.--|-.+. +...=+++ |.||+|+|.+ .+.++. ++||
T Consensus 34 ~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~--~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG 111 (176)
T COG0663 34 AGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPG--YPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIG 111 (176)
T ss_pred CCCEECCceEEEccCCceEECCCceecCCeEEecCCC--CCeEECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEEC
Confidence 355556655 445555566665554333332211 22222222 4477788888 778887 8888
Q ss_pred CcccccCCCC
Q 040948 243 NNFMLPDNSL 252 (286)
Q Consensus 243 ~~~~~~~~~~ 252 (286)
.+-+|+-+|+
T Consensus 112 ~~~iVgAgal 121 (176)
T COG0663 112 DGSIVGAGAL 121 (176)
T ss_pred CCcEEccCCc
Confidence 8877777776
No 21
>PHA03162 hypothetical protein; Provisional
Probab=33.34 E-value=3.1e+02 Score=23.40 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCCHHHHhcchHHHHHHHHHHHHHHH
Q 040948 99 LELFESKKQKLMEKKKAFVEKMFSILETK----IDEASSVEELGVVYNKVESKLASMRETI 155 (286)
Q Consensus 99 ~e~l~~e~~KL~Kk~kel~~~~~~~~g~~----Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk 155 (286)
.|.|..++.+|+-+++.+.+.+++-.+.+ -.-|+..+=+-+ ....-.+|...-+++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~-I~s~v~~Lts~A~kK 74 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAM-IGAATAALTRQAAKK 74 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56788899999999999988877665544 235888877766 665555554443333
No 22
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.03 E-value=2.1e+02 Score=27.17 Aligned_cols=61 Identities=8% Similarity=0.168 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q 040948 99 LELFESKKQKLMEKKKAFVEKMFSILETKIDEASSVEELGVVYNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 99 ~e~l~~e~~KL~Kk~kel~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
++.++.++++|+++.++++++|+..+-.--+++ ..-.+.+ .+.|--+|..+-.-.++|.--
T Consensus 13 k~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~l-A~RVqGF-kdYLvGsLQDLa~saEqLeLv 73 (283)
T PF11285_consen 13 KQALQIEIEQLERRRERIEKEMRTSFAGQSQDL-AIRVQGF-KDYLVGSLQDLAQSAEQLELV 73 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHH-HHHHhhh-HHHHHHHHHHHHHHHHhhccC
Confidence 346778889998888888888887653222333 2467788 999999999998888887654
No 23
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.93 E-value=2.4e+02 Score=24.06 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHH
Q 040948 102 FESKKQKLMEKKKAFVEKMFSILETKIDEASSVEELGVVYNKVESKLASMRETIELA 158 (286)
Q Consensus 102 l~~e~~KL~Kk~kel~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L 158 (286)
+...+..|+++++++...+-.+-+ .-...+.+|...+ ........+..+.|+..+
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~-~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKL-EKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 344555555655555444433333 3344889999999 999999999999988754
No 24
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=30.80 E-value=3.2e+02 Score=22.81 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCCCCHHHHhcchHHHHHHHHHHHHHHH
Q 040948 99 LELFESKKQKLMEKKKAFVEKMFSILE----TKIDEASSVEELGVVYNKVESKLASMRETI 155 (286)
Q Consensus 99 ~e~l~~e~~KL~Kk~kel~~~~~~~~g----~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk 155 (286)
.+.|..++.+|+-+++.+...+++-.| .+-.-|+..+=+-+ ....-.+|...-.++
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~-I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAM-ITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHH-HHHHHHHHHHHHHHH
Confidence 466888899999999999888877766 55567888887777 665555555444433
No 25
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=30.59 E-value=2.6e+02 Score=28.27 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=34.1
Q ss_pred hhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhcc
Q 040948 28 NFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELR 83 (286)
Q Consensus 28 TFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~ 83 (286)
...+--.+|+|+- .|.+- .-+-+++|+++|+|..|.+ +++||+.|-...
T Consensus 279 ~~~~~~~~L~k~~-~L~~~--~~~Nm~~~d~~g~~~~~~~----~~~Il~~f~~~R 327 (439)
T PHA02592 279 NEEATHEKIMKDF-GLIER--VSQNITVINENGKLKVYEN----AEDLIRDFVEIR 327 (439)
T ss_pred CHHHHHHHHHHhc-Cchhe--eeeeEEEEecCCeeeecCC----HHHHHHHHHHHH
Confidence 3344556777653 33332 2467889999999999865 599999997763
No 26
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=30.59 E-value=15 Score=21.99 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=8.6
Q ss_pred EEEecCCCCee
Q 040948 53 LVCYGPDGKVE 63 (286)
Q Consensus 53 lIVfSp~Gk~~ 63 (286)
+.+|||+|+++
T Consensus 5 ~t~FSp~Grl~ 15 (23)
T PF10584_consen 5 ITTFSPDGRLF 15 (23)
T ss_dssp TTSBBTTSSBH
T ss_pred ceeECCCCeEE
Confidence 35799999876
No 27
>PHA03155 hypothetical protein; Provisional
Probab=30.13 E-value=3.2e+02 Score=22.67 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHH
Q 040948 99 LELFESKKQKLMEKKKAFVEKMFSILETKIDEASSVEELGVVYNKVESKLASMRETI 155 (286)
Q Consensus 99 ~e~l~~e~~KL~Kk~kel~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk 155 (286)
.|.|..++.+|+-+++.+...+++-.+.+-.-|+..|=.-+ ....-.+|...-+++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~-I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAI-INSLVNKLTKKAEEK 65 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45688889999999988887776654444356888887777 666665555443333
No 28
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=29.66 E-value=5.6e+02 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHhhh
Q 040948 30 EKRKETLKNKAHELETL 46 (286)
Q Consensus 30 sKRR~GL~KKA~ELStL 46 (286)
.+||.-+=-+..||+.|
T Consensus 242 RRRR~nIN~~IkeLg~l 258 (411)
T KOG1318|consen 242 RRRRENINDRIKELGQL 258 (411)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36888888899999988
No 29
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=27.48 E-value=5.4e+02 Score=24.39 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=40.6
Q ss_pred hhhhhHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHH
Q 040948 71 KVNDMIDKYKELREMPVLMKKAEQRLDLLELFESKKQKLMEKKKAFVEKMFSILETKIDEASSVEELGVVYNKVESKLAS 150 (286)
Q Consensus 71 sVe~VIdRY~~~~e~~~skk~~~qe~~l~e~l~~e~~KL~Kk~kel~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~ 150 (286)
.+++||..+.......+ ....-++......|....+++...+-+ ........+..++..- ...||..|..
T Consensus 60 ~~d~ii~~ln~~~~~s~--------~t~ls~~r~~~~tL~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~-l~~iet~L~~ 129 (271)
T PF05549_consen 60 NVDQIINMLNPINLTSQ--------GTPLSRIRDALRTLTRLLDSIHSVEQK-SELSANTPSSSKLLKK-LASIETSLES 129 (271)
T ss_pred cHHHHHHHhCcccchhh--------cchHHHHHHHHHHHHhhHHHHHHHHHH-HhcccCCccchhHHHH-HHHHHhHHHH
Confidence 67888888766532111 111122333344444433333222111 1122223333444444 4777888888
Q ss_pred HHHHHHHHHHh
Q 040948 151 MRETIELAIIE 161 (286)
Q Consensus 151 Ir~Rk~~L~~~ 161 (286)
+..|+++|...
T Consensus 130 lh~kld~l~~~ 140 (271)
T PF05549_consen 130 LHIKLDELISS 140 (271)
T ss_pred HHHHHHHHHhc
Confidence 99898887754
No 30
>PRK09458 pspB phage shock protein B; Provisional
Probab=27.42 E-value=1e+02 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q 040948 126 TKIDEASSVEELGVVYNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 126 ~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
..-.+||.+|.+.| ..|-..-+++++|++.|+.=
T Consensus 31 ~~~~~Ls~~d~~~L--~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 31 QGSQGLSQEEQQRL--AQLTEKAERMRERIQALEAI 64 (75)
T ss_pred cCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33468999998888 66777888999999998753
No 31
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=24.38 E-value=4.4e+02 Score=22.37 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=27.4
Q ss_pred hhHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 040948 74 DMIDKYKELREMPVLMKKAEQRLDLLELFESKKQKLMEKK 113 (286)
Q Consensus 74 ~VIdRY~~~~e~~~skk~~~qe~~l~e~l~~e~~KL~Kk~ 113 (286)
.+|+...+.++.+.+ .....+.++++++..++++|+.+.
T Consensus 13 ~ll~~L~~s~etD~s-R~q~~e~~iq~Rva~eL~~L~~~~ 51 (142)
T PF07956_consen 13 SLLSQLQSSTETDSS-RAQTLELHIQERVAEELKRLEEEE 51 (142)
T ss_pred HHHHHHhCCCCCChh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888887776543 222335688889999999997653
No 32
>PF06147 DUF968: Protein of unknown function (DUF968); InterPro: IPR010373 This is a family of uncharacterised prophage proteins that are also found in bacteria and humans.
Probab=23.71 E-value=36 Score=30.51 Aligned_cols=13 Identities=38% Similarity=1.081 Sum_probs=9.5
Q ss_pred ccCCccccCCCCC
Q 040948 272 LIGGPCCNCGRGP 284 (286)
Q Consensus 272 ~~~~~~~~~~~~~ 284 (286)
+.--|||-||+.|
T Consensus 125 v~~~~C~iCGk~~ 137 (200)
T PF06147_consen 125 VKSRPCVICGKPP 137 (200)
T ss_pred hccCccccCCCCc
Confidence 4566888888755
No 33
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.64 E-value=1.4e+02 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=26.5
Q ss_pred CCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 040948 127 KIDEASSVEELGVVYNKVESKLASMRETIELAII 160 (286)
Q Consensus 127 ~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~ 160 (286)
.-.+||.+|.+.| ..|-..-++..+|++.|+.
T Consensus 32 ~~~gLs~~d~~~L--~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 32 SSQGLSEEDEQRL--QELYEQAERMEERIETLER 63 (75)
T ss_pred cCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3467898888887 7778888999999999875
No 34
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=23.59 E-value=1.4e+02 Score=20.96 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 040948 141 YNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 141 e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
...++.++..|.+|+..|..-
T Consensus 38 ~~~l~~~~~~i~~~i~~L~~~ 58 (65)
T PF09278_consen 38 RALLEEKLEEIEEQIAELQAL 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999887753
No 35
>PRK10191 putative acyl transferase; Provisional
Probab=23.47 E-value=49 Score=28.11 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=13.7
Q ss_pred CCCceecCCC-Ccc-ccccCCcccccCCCCC
Q 040948 225 IGDNVMLPDN-NFL-PSEIGNNFMLPDNSLL 253 (286)
Q Consensus 225 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 253 (286)
||+|+.++.+ .+. ...||++..++.+|..
T Consensus 95 IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 95 IGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred ECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 5555555522 222 2344555555555553
No 36
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=23.27 E-value=46 Score=28.36 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=6.1
Q ss_pred ccCCcccccCCCC
Q 040948 240 EIGNNFMLPDNSL 252 (286)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (286)
.||+|-.|+.+|.
T Consensus 133 ~IG~~~~Iga~s~ 145 (162)
T TIGR01172 133 EVGENAKIGANSV 145 (162)
T ss_pred EECCCCEECCCCE
Confidence 3455544444443
No 37
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.09 E-value=6.2e+02 Score=24.69 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=10.2
Q ss_pred hhhhhHHHhhhcccc
Q 040948 71 KVNDMIDKYKELREM 85 (286)
Q Consensus 71 sVe~VIdRY~~~~e~ 85 (286)
+.+++-+.|++..+.
T Consensus 5 EW~eL~~efq~Lqet 19 (330)
T PF07851_consen 5 EWEELQKEFQELQET 19 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777778777543
No 38
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.02 E-value=2.7e+02 Score=25.53 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=25.9
Q ss_pred cCCCCCCCHHHHhcchHHHHHHHHHHHHHHH
Q 040948 125 ETKIDEASSVEELGVVYNKVESKLASMRETI 155 (286)
Q Consensus 125 g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk 155 (286)
+....+++..+|... ....+..|+.||.|-
T Consensus 114 ~~~~~~~~~~~l~~~-l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 114 NENGDQLPSEDLQRA-LAEAQRMLEEMRKRD 143 (264)
T ss_pred CcccCCCCHHHHHHH-HHHHHHHHHHHHhcc
Confidence 446678899999999 999999999999983
No 39
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.59 E-value=4.3e+02 Score=21.59 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=25.6
Q ss_pred CCCCHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 040948 129 DEASSVEELGVVYNKVESKLASMRETIELAI 159 (286)
Q Consensus 129 d~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~ 159 (286)
.+++.+++.+| -..++..|+++|.|+....
T Consensus 32 g~~a~~e~~~l-R~r~~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 32 GSLAGDEAEEL-RSKAESALKEARDRLGDTG 61 (104)
T ss_pred ccchhhHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence 34567899999 9999999999999998764
No 40
>PF00948 Flavi_NS1: Flavivirus non-structural Protein NS1 ; InterPro: IPR001157 The Flavivirus genome polypepetide contains the capsid protein C (core protein), the matrix protein (envelope protein M), the major envelope protein E, a number of small non structural proteins (NS1, NS2A, NS2B, NS4A and NS4B), helicase and RNA-directed polymerase (NS5) [].
Probab=22.29 E-value=46 Score=32.71 Aligned_cols=32 Identities=50% Similarity=1.098 Sum_probs=27.7
Q ss_pred CCceeecCCcchhhhccccccCCccc--------cC-CCCCC
Q 040948 253 LPGYVHANKGAWAQENFSGLIGGPCC--------NC-GRGPS 285 (286)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~ 285 (286)
.|||-.-.+|.|.+..+ =|.=|||. +| +||||
T Consensus 257 ipGY~~Q~~gPW~~~~l-~l~~~~CPGTtV~vd~~C~~RG~S 297 (356)
T PF00948_consen 257 IPGYKTQTKGPWNQGPL-ELKREPCPGTTVTVDESCDGRGPS 297 (356)
T ss_pred CCcccccccCCccCCce-EEEeccCCCcEEEECCCCCCCCCc
Confidence 79999999999999999 78899995 57 47776
No 41
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.22 E-value=6.7e+02 Score=23.85 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=42.1
Q ss_pred eecCCCcchhhhhHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCC--HHHHhcc
Q 040948 63 ETWPEDKTKVNDMIDKYKELREMPVLMKKAEQRLDLLELFESKKQKLMEKKKAFVEKMFSILE-TKIDEAS--SVEELGV 139 (286)
Q Consensus 63 ~~wpSp~~sVe~VIdRY~~~~e~~~skk~~~qe~~l~e~l~~e~~KL~Kk~kel~~~~~~~~g-~~Ld~LS--~eEL~eL 139 (286)
+..++| ..+..|++.+....+.-..........+-.++++++.++++++.++.+..+..+.. ..+-+.. ...+.++
T Consensus 137 ~~~~dP-~~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~ 215 (362)
T TIGR01010 137 VTAFDA-EEAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSL 215 (362)
T ss_pred EEecCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHH
Confidence 445565 67777777765421110000011111233456666666666666555444333322 1111111 1223334
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 040948 140 VYNKVESKLASMRETIELAI 159 (286)
Q Consensus 140 ~e~~LE~kL~~Ir~Rk~~L~ 159 (286)
...|+..+..++.++..+.
T Consensus 216 -i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 216 -ISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 42
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=22.10 E-value=99 Score=25.71 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=26.7
Q ss_pred ccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhc
Q 040948 47 CDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKEL 82 (286)
Q Consensus 47 CdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~ 82 (286)
|+...++-|..++|++..|..| ..|.+|+..|=.+
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~p-v~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRP-VTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCC-cCHHHHHHHCCCC
Confidence 3444455555589999999998 8999999998655
No 43
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.62 E-value=67 Score=28.25 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=31.5
Q ss_pred hhhhhhhHHHHHHHHhhhccCcEEEEEecCCC-----CeeecCCCcchhhhhHHHhhhccc
Q 040948 29 FEKRKETLKNKAHELETLCDVMVCLVCYGPDG-----KVETWPEDKTKVNDMIDKYKELRE 84 (286)
Q Consensus 29 FsKRR~GL~KKA~ELStLCdveV~lIVfSp~G-----k~~~wpSp~~sVe~VIdRY~~~~e 84 (286)
+.=|..-+++|.+++...+..=...|.-.|.. +...+-=| ++.+++++|.....
T Consensus 92 ~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp--~~~~l~~kY~~l~~ 150 (199)
T PF10112_consen 92 KRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLP--TAVKLLEKYAELES 150 (199)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhh--HHHHHHHHHHHHHh
Confidence 33444456667777766666555555556642 22223333 67888888887754
No 44
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.00 E-value=6.3e+02 Score=25.10 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=26.3
Q ss_pred eecCCCcchhhhhHHH----hhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040948 63 ETWPEDKTKVNDMIDK----YKELREMPVLMKKAEQRLDLLELFESKKQKLMEKKKAFVE 118 (286)
Q Consensus 63 ~~wpSp~~sVe~VIdR----Y~~~~e~~~skk~~~qe~~l~e~l~~e~~KL~Kk~kel~~ 118 (286)
+.|+.| .-+..|++. |.+..... +...-....+++++++.+++++.++...
T Consensus 128 ~~~~dP-~~Aa~i~n~l~~~yi~~~~~~----~~~~~~~~~~fl~~ql~~~~~~L~~ae~ 182 (498)
T TIGR03007 128 YEDKDP-ELAKDVVQTLLTIFVEETLGS----KRQDSDSAQRFIDEQIKTYEKKLEAAEN 182 (498)
T ss_pred eeCCCH-HHHHHHHHHHHHHHHHhhccc----chhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777 566666655 65543221 1111123455666666666665555433
Done!