Query 040948
Match_columns 286
No_of_seqs 143 out of 1424
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 1.4E-33 4.8E-38 220.3 5.4 77 8-88 1-77 (90)
2 1egw_A MADS box transcription 100.0 1.1E-33 3.8E-38 215.4 4.5 74 8-85 1-74 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.3E-32 4.4E-37 218.4 4.2 76 3-82 12-87 (100)
4 1hbx_A SRF, serum response fac 100.0 1.3E-32 4.4E-37 215.6 3.5 75 3-81 6-80 (92)
5 1k6o_B SRF, serum response fac 100.0 6.7E-32 2.3E-36 215.5 3.7 74 3-80 5-78 (103)
6 1j1d_C Troponin I, TNI; THIN f 66.4 28 0.00096 28.3 8.2 34 126-160 53-86 (133)
7 2rpa_A Katanin P60 ATPase-cont 62.8 3.4 0.00012 30.8 1.9 57 37-109 16-72 (78)
8 1j1e_C Troponin I, TNI; THIN f 58.0 29 0.00099 29.7 7.1 33 126-159 53-85 (180)
9 1gs9_A Apolipoprotein E, APOE4 53.3 46 0.0016 27.7 7.6 38 119-161 121-158 (165)
10 1nfn_A Apolipoprotein E3; lipi 48.7 60 0.0021 27.5 7.8 40 117-161 119-158 (191)
11 1ytz_I Troponin I; muscle, THI 36.3 1.4E+02 0.0047 25.5 7.9 33 126-160 51-83 (182)
12 1ytz_T Troponin T; muscle, THI 30.3 99 0.0034 24.1 5.6 34 126-160 37-70 (107)
13 1fxk_A Prefoldin; archaeal pro 29.6 1.7E+02 0.0058 21.5 7.2 13 71-83 2-14 (107)
14 1j1d_B Troponin T, TNT; THIN f 25.9 99 0.0034 24.1 4.9 33 127-160 38-70 (106)
15 2l7b_A Apolipoprotein E, APO-E 24.7 2.2E+02 0.0074 25.9 7.8 52 104-160 114-165 (307)
16 2p2o_A Maltose transacetylase; 22.5 20 0.00069 29.8 0.3 14 239-252 131-144 (185)
17 3gos_A 2,3,4,5-tetrahydropyrid 22.2 31 0.001 30.7 1.4 15 238-252 177-191 (276)
18 3q1x_A Serine acetyltransferas 22.1 27 0.00092 32.1 1.1 18 63-82 27-44 (313)
19 1m2d_A [2Fe-2S] ferredoxin; th 21.1 46 0.0016 25.3 2.1 33 47-81 59-91 (110)
20 3mc4_A WW/RSP5/WWP domain:bact 20.9 25 0.00086 32.0 0.6 13 240-252 218-230 (287)
21 3ftt_A Putative acetyltransfer 20.5 23 0.0008 29.6 0.2 38 220-257 98-150 (199)
22 2l5g_B Putative uncharacterize 20.5 93 0.0032 20.4 3.1 30 131-161 2-31 (42)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.98 E-value=1.4e-33 Score=220.27 Aligned_cols=77 Identities=29% Similarity=0.425 Sum_probs=73.6
Q ss_pred CccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhcccchh
Q 040948 8 VKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELREMPV 87 (286)
Q Consensus 8 gRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~e~~~ 87 (286)
||+||+|++|+| +++|+|||+|||.||||||+||||||||+||||||||+|++|+|+|+ +|+.||+||+..++.++
T Consensus 1 GR~Ki~ik~Ien--~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMD--ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecC--chHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCcccc
Confidence 899999999999 99999999999999999999999999999999999999999999996 89999999999877654
Q ss_pred h
Q 040948 88 L 88 (286)
Q Consensus 88 s 88 (286)
+
T Consensus 77 ~ 77 (90)
T 3p57_A 77 S 77 (90)
T ss_dssp E
T ss_pred c
Confidence 3
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.98 E-value=1.1e-33 Score=215.36 Aligned_cols=74 Identities=30% Similarity=0.465 Sum_probs=69.7
Q ss_pred CccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhcccc
Q 040948 8 VKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELREM 85 (286)
Q Consensus 8 gRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~e~ 85 (286)
||+||+|++|+| +++|+|||+|||.||||||+||||||||+||||||||+|++|+|+|+ +|+.||+||+...++
T Consensus 1 GR~Ki~ik~I~n--~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~--~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMD--ERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC---
T ss_pred CCceeeeEEecC--chHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC--CHHHHHHHHHhccCC
Confidence 899999999999 99999999999999999999999999999999999999999999996 899999999988653
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=1.3e-32 Score=218.43 Aligned_cols=76 Identities=28% Similarity=0.379 Sum_probs=70.7
Q ss_pred ccccCCccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhc
Q 040948 3 AETTQVKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKEL 82 (286)
Q Consensus 3 ~~~~MgRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~ 82 (286)
+.++|||+||+|++|+| +.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+|| +++.||++|...
T Consensus 12 ~~~~mgR~Ki~ik~Ien--~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp--s~~~il~r~~G~ 87 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIEN--KTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP--KFEPIVTQQEGR 87 (100)
T ss_dssp ---CCCCCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT--TTTHHHHSHHHH
T ss_pred CCCCCCccceeeEEecC--cchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC--CHHHHHHHhhCC
Confidence 56899999999999999 99999999999999999999999999999999999999999999998 899999998654
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=1.3e-32 Score=215.65 Aligned_cols=75 Identities=29% Similarity=0.355 Sum_probs=71.5
Q ss_pred ccccCCccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhh
Q 040948 3 AETTQVKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKE 81 (286)
Q Consensus 3 ~~~~MgRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~ 81 (286)
++++|||+||+|++|+| +.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++| +|+.||++|..
T Consensus 6 ~k~~mgR~Ki~ik~Ien--~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~--~~~~~i~~~~G 80 (92)
T 1hbx_A 6 GKKTRGRVKIKMEFIDN--KLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR--KLQPMITSETG 80 (92)
T ss_dssp CCSSCCSCCCCSSCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG--GGGGGTSSHHH
T ss_pred CCCCCCcceEEEEEecC--hhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC--CHHHHHhhhcc
Confidence 57789999999999999 99999999999999999999999999999999999999999999997 89999997654
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=6.7e-32 Score=215.49 Aligned_cols=74 Identities=30% Similarity=0.363 Sum_probs=70.5
Q ss_pred ccccCCccceeeEEeccCCCCccchhhhhhhhhHHHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhh
Q 040948 3 AETTQVKRKRSVKLIEEHGGNSRQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYK 80 (286)
Q Consensus 3 ~~~~MgRrKi~iK~Ien~~~~sRqvTFsKRR~GL~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~ 80 (286)
.+++|||+||+|++|+| +.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+++ +|+.||+++.
T Consensus 5 ~k~~mgR~Ki~ik~Ien--~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~--~~~~vi~~~~ 78 (103)
T 1k6o_B 5 GKKTRGRVKIKMEFIDN--KLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR--KLQPMITSET 78 (103)
T ss_dssp CCSSCCSCCCCSSCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG--GGGGGTSSHH
T ss_pred CCCCCCcceeEEEEecC--chHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc--cHHHHHHhhh
Confidence 46789999999999999 99999999999999999999999999999999999999999999997 8999998753
No 6
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=66.43 E-value=28 Score=28.34 Aligned_cols=34 Identities=6% Similarity=-0.019 Sum_probs=28.0
Q ss_pred CCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 040948 126 TKIDEASSVEELGVVYNKVESKLASMRETIELAII 160 (286)
Q Consensus 126 ~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~ 160 (286)
-++++|+.++|+++ ...|-..+..+.+-+..|..
T Consensus 53 L~id~ls~~~L~e~-~keLh~~I~~LEeEKYDlE~ 86 (133)
T 1j1d_C 53 LELAGLGFAELQDL-ARQLHARVDKVDEERYDIEA 86 (133)
T ss_dssp CCCTTCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999 99998888888777655543
No 7
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=62.76 E-value=3.4 Score=30.75 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=40.0
Q ss_pred HHHHHHHhhhccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhhcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 040948 37 KNKAHELETLCDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKELREMPVLMKKAEQRLDLLELFESKKQKL 109 (286)
Q Consensus 37 ~KKA~ELStLCdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~~~e~~~skk~~~qe~~l~e~l~~e~~KL 109 (286)
+|+|.|.+.|++=|.|++.| .++..-|.||...-..+. .+..|+ .+++.+..|.+.+
T Consensus 16 ~k~ARe~Al~GnYdta~~yY-------------~g~~~qI~k~l~~~~d~~-~r~kW~--~~~~ei~~E~~~V 72 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYY-------------QGVLDQMNKYLYSVKDTH-LRQKWQ--QVWQEINVEAKQV 72 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHH-------------HHHHHHHHHHHHTCSCHH-HHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHH-------------HHHHHHHHHHHHhcCCHH-HHHhHH--HHHHHHHHHHHHH
Confidence 68999999999999998888 488999999988754321 223333 5555555555443
No 8
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=57.96 E-value=29 Score=29.70 Aligned_cols=33 Identities=6% Similarity=-0.011 Sum_probs=26.9
Q ss_pred CCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 040948 126 TKIDEASSVEELGVVYNKVESKLASMRETIELAI 159 (286)
Q Consensus 126 ~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~ 159 (286)
-++++|+.++|+++ ...|-..+..+.+-+..|.
T Consensus 53 Lnid~Lse~~L~e~-ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 53 LELAGLGFAELQDL-ARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CCGGGCCHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH-HHHHHHHHHHHHHHHhhHH
Confidence 48889999999999 9999888888776665544
No 9
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=53.27 E-value=46 Score=27.68 Aligned_cols=38 Identities=5% Similarity=-0.062 Sum_probs=27.5
Q ss_pred HHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q 040948 119 KMFSILETKIDEASSVEELGVVYNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 119 ~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
.++..++.. .+++++-|...+++....++.+.+.|+..
T Consensus 121 el~~~l~~~-----~EelR~kl~P~~eeL~~~~~~~~eeLr~k 158 (165)
T 1gs9_A 121 EVQAMLGQS-----TEELRVRLASHLRKLRKRLLRDADDLQKR 158 (165)
T ss_dssp HHHTSTTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344455555 57787776888888888888888888753
No 10
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=48.69 E-value=60 Score=27.48 Aligned_cols=40 Identities=5% Similarity=-0.082 Sum_probs=27.3
Q ss_pred HHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q 040948 117 VEKMFSILETKIDEASSVEELGVVYNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 117 ~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
..+++..++.+ +++++.-|....++....++.+++.|+..
T Consensus 119 ~eEL~~~l~~~-----~Eelr~~L~Py~eelr~kl~~~~eeLr~~ 158 (191)
T 1nfn_A 119 RGEVQAMLGQS-----TEELRVRLASHLRKLRKRLLRDADDLQKR 158 (191)
T ss_dssp HHHHHHTTTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455566665 56676655778888888888888877754
No 11
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=36.30 E-value=1.4e+02 Score=25.52 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 040948 126 TKIDEASSVEELGVVYNKVESKLASMRETIELAII 160 (286)
Q Consensus 126 ~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~ 160 (286)
-++++ +.++|+++ ...|-..+..+.+-+..|..
T Consensus 51 Lnid~-se~~L~e~-ckELh~~I~~LEeEKYDlE~ 83 (182)
T 1ytz_I 51 LSLPG-SMQELQEL-SKKLHAKIDSVDEERYDTEV 83 (182)
T ss_dssp CCCCC-SHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHH-HHHHHHHHHHHHHHHhhHHH
Confidence 47788 99999999 99999999988877765553
No 12
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.31 E-value=99 Score=24.06 Aligned_cols=34 Identities=9% Similarity=-0.134 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 040948 126 TKIDEASSVEELGVVYNKVESKLASMRETIELAII 160 (286)
Q Consensus 126 ~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~ 160 (286)
-++++|+.++|+++ ...|-..+..+.+-+-.|..
T Consensus 37 L~id~l~~~~L~e~-~keLh~~I~~lEeEKYDlE~ 70 (107)
T 1ytz_T 37 LNIDHLNEDKLRDK-AKELWDWLYQLQTEKYDFAE 70 (107)
T ss_dssp CCCSSSCSSHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHH-HHHHHHHHHHHHHHHhhHHH
Confidence 47899999999999 99999998888877766554
No 13
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.58 E-value=1.7e+02 Score=21.55 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=10.1
Q ss_pred hhhhhHHHhhhcc
Q 040948 71 KVNDMIDKYKELR 83 (286)
Q Consensus 71 sVe~VIdRY~~~~ 83 (286)
.++..|.+|..+.
T Consensus 2 ~~Q~~i~~f~~lq 14 (107)
T 1fxk_A 2 NVQHQLAQFQQLQ 14 (107)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5778888888873
No 14
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.93 E-value=99 Score=24.05 Aligned_cols=33 Identities=6% Similarity=-0.135 Sum_probs=27.3
Q ss_pred CCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 040948 127 KIDEASSVEELGVVYNKVESKLASMRETIELAII 160 (286)
Q Consensus 127 ~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~ 160 (286)
++++|+.++|+++ ...|-..+..+.+-+-.|..
T Consensus 38 ~id~l~~~~L~e~-~keLh~~I~~LEeEKYDlE~ 70 (106)
T 1j1d_B 38 AIDHLNEDQLREK-AKELWQTIYNLEAEKFDLQE 70 (106)
T ss_dssp HHTTCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHH-HHHHHHHHHHHHHhhhhHHH
Confidence 6789999999999 99998888888777666554
No 15
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=24.74 E-value=2.2e+02 Score=25.94 Aligned_cols=52 Identities=4% Similarity=-0.038 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 040948 104 SKKQKLMEKKKAFVEKMFSILETKIDEASSVEELGVVYNKVESKLASMRETIELAII 160 (286)
Q Consensus 104 ~e~~KL~Kk~kel~~~~~~~~g~~Ld~LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~ 160 (286)
+.++.++.++.-...++...|+.++ ++|+.-|....++....++...+.|..
T Consensus 114 ~dlEelR~~L~Py~~el~~~l~~~~-----eelr~kL~Py~~EL~~~~~~~~eeLr~ 165 (307)
T 2l7b_A 114 ADMEDVCGRLVQYRGEVQAMLGQST-----EELRVRLASHLRKLRKRLLRDADDLQK 165 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCS-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333333333333345566677774 555544466666666666666666554
No 16
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A
Probab=22.49 E-value=20 Score=29.85 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=7.5
Q ss_pred cccCCcccccCCCC
Q 040948 239 SEIGNNFMLPDNSL 252 (286)
Q Consensus 239 ~~~~~~~~~~~~~~ 252 (286)
..||+|-+|+.++.
T Consensus 131 v~IGd~v~IG~~~~ 144 (185)
T 2p2o_A 131 VVIGHNVWIGGRAV 144 (185)
T ss_dssp EEECSSCEECTTCE
T ss_pred eEEcCCeEECCCCE
Confidence 34455555555554
No 17
>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A
Probab=22.17 E-value=31 Score=30.70 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=9.2
Q ss_pred ccccCCcccccCCCC
Q 040948 238 PSEIGNNFMLPDNSL 252 (286)
Q Consensus 238 ~~~~~~~~~~~~~~~ 252 (286)
+..||+|-+|+.++.
T Consensus 177 ~v~IGd~v~IG~~a~ 191 (276)
T 3gos_A 177 PTIIEDNCFVGARSE 191 (276)
T ss_dssp CCEECTTCEECTTCE
T ss_pred CeEECCCCEECCCCE
Confidence 455666666666665
No 18
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Probab=22.06 E-value=27 Score=32.08 Aligned_cols=18 Identities=11% Similarity=0.525 Sum_probs=10.6
Q ss_pred eecCCCcchhhhhHHHhhhc
Q 040948 63 ETWPEDKTKVNDMIDKYKEL 82 (286)
Q Consensus 63 ~~wpSp~~sVe~VIdRY~~~ 82 (286)
..+||. +.+.. +++.+..
T Consensus 27 ~~~p~~-~~~~~-~~~~~~~ 44 (313)
T 3q1x_A 27 RDYPHK-KVFTE-LQKLRKI 44 (313)
T ss_dssp CCCCCC-CCCHH-HHHHHHH
T ss_pred CCCCCH-HHHHH-HHHHHHh
Confidence 347885 55655 6665553
No 19
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=21.06 E-value=46 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=24.1
Q ss_pred ccCcEEEEEecCCCCeeecCCCcchhhhhHHHhhh
Q 040948 47 CDVMVCLVCYGPDGKVETWPEDKTKVNDMIDKYKE 81 (286)
Q Consensus 47 CdveV~lIVfSp~Gk~~~wpSp~~sVe~VIdRY~~ 81 (286)
|+-.-.|+|+ |+|..|..-++ +.++.||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~-e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKP-EDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCG-GGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCH-HHHHHHHHHHHH
Confidence 4444445666 88888877787 799999999753
No 20
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}
Probab=20.88 E-value=25 Score=31.98 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=7.8
Q ss_pred ccCCcccccCCCC
Q 040948 240 EIGNNFMLPDNSL 252 (286)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (286)
.||+|-+|+.++.
T Consensus 218 ~IGd~v~IGaga~ 230 (287)
T 3mc4_A 218 KIRQGVLIGAGAK 230 (287)
T ss_dssp EECTTCEECTTCE
T ss_pred EECCCCEECCCCE
Confidence 4566666666665
No 21
>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A
Probab=20.48 E-value=23 Score=29.61 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=0.0
Q ss_pred CCCCCCCCceecCCCC--------------ccccccCCcccccCCCC-CCcee
Q 040948 220 GENGNIGDNVMLPDNN--------------FLPSEIGNNFMLPDNSL-LPGYV 257 (286)
Q Consensus 220 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~ 257 (286)
+.|+.||+|+.+...+ ..+..||+|-.|+.++. ++|..
T Consensus 98 G~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~ 150 (199)
T 3ftt_A 98 GDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVT 150 (199)
T ss_dssp CSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCE
T ss_pred CCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCE
No 22
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.46 E-value=93 Score=20.39 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=21.5
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Q 040948 131 ASSVEELGVVYNKVESKLASMRETIELAIIE 161 (286)
Q Consensus 131 LS~eEL~eL~e~~LE~kL~~Ir~Rk~~L~~~ 161 (286)
++-+||.+- ...++.-+..++++|..|...
T Consensus 2 ~tk~~l~qk-I~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 2 LSKEELIQN-MDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp CSSSHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 555677776 677777777777777777654
Done!