Your job contains 1 sequence.
>040951
ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPV
PDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGL
TVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCN
MCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMAL
DEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKAR
KKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAG
SDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYF
PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML
LAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH
LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL
ATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDP
HVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040951
(701 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2128751 - symbol:EMB2770 "EMBRYO DEFECTIVE 277... 1468 3.6e-198 2
UNIPROTKB|F1N9U0 - symbol:PRPF6 "Uncharacterized protein"... 1088 1.7e-126 2
UNIPROTKB|E2RPW8 - symbol:PRPF6 "Uncharacterized protein"... 1085 4.4e-126 2
MGI|MGI:1922946 - symbol:Prpf6 "PRP6 pre-mRNA splicing fa... 1084 5.6e-126 2
UNIPROTKB|Q2KJJ0 - symbol:PRPF6 "Pre-mRNA-processing fact... 1083 7.1e-126 2
RGD|1307103 - symbol:Prpf6 "PRP6 pre-mRNA processing fact... 1083 7.1e-126 2
ZFIN|ZDB-GENE-030131-2575 - symbol:prpf6 "PRP6 pre-mRNA p... 1075 1.0e-124 2
UNIPROTKB|O94906 - symbol:PRPF6 "Pre-mRNA-processing fact... 1066 4.5e-124 2
FB|FBgn0036828 - symbol:CG6841 species:7227 "Drosophila m... 1035 1.6e-104 1
ASPGD|ASPL0000068414 - symbol:AN7447 species:162425 "Emer... 958 2.2e-96 1
WB|WBGene00013343 - symbol:prp-6 species:6239 "Caenorhabd... 803 1.5e-91 2
POMBASE|SPBC6B1.07 - symbol:prp1 "U4/U6 x U5 tri-snRNP co... 884 1.0e-90 2
UNIPROTKB|I3L7Q4 - symbol:PRPF6 "Uncharacterized protein"... 739 1.2e-89 2
DICTYBASE|DDB_G0272374 - symbol:prpf6 "pre-mRNA processin... 741 2.2e-73 1
SGD|S000000259 - symbol:PRP6 "Splicing factor" species:49... 344 3.8e-54 2
CGD|CAL0001343 - symbol:orf19.6356 species:5476 "Candida ... 512 2.7e-48 1
UNIPROTKB|Q59PD7 - symbol:PRP6 "Putative uncharacterized ... 512 2.7e-48 1
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 204 2.5e-12 2
TAIR|locus:2086132 - symbol:HCF107 "high chlorophyll fluo... 183 1.6e-10 1
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 179 4.8e-10 1
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 171 3.3e-09 1
DICTYBASE|DDB_G0280363 - symbol:DDB_G0280363 species:4468... 169 1.3e-08 1
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 162 3.7e-08 1
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 160 5.0e-08 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 153 3.5e-07 1
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 157 3.6e-07 2
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 150 6.4e-07 1
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 146 1.9e-06 1
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 143 3.8e-06 1
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 143 3.8e-06 1
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 143 3.9e-06 1
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 141 8.0e-06 1
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 141 8.2e-06 1
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 137 1.7e-05 1
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 135 1.9e-05 2
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 141 2.1e-05 1
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 140 2.7e-05 1
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 140 2.7e-05 1
TAIR|locus:2121214 - symbol:BGAL14 "beta-galactosidase 14... 136 3.7e-05 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 130 4.0e-05 2
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 138 4.4e-05 1
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 132 6.9e-05 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 136 7.2e-05 1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 136 7.2e-05 1
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 126 0.00012 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 144 0.00018 2
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 144 0.00018 2
UNIPROTKB|Q60A19 - symbol:MCA1053 "TPR domain protein" sp... 125 0.00023 2
RGD|1306211 - symbol:Ttc7a "tetratricopeptide repeat doma... 119 0.00028 1
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi... 125 0.00048 1
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 130 0.00072 2
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 130 0.00072 2
>TAIR|locus:2128751 [details] [associations]
symbol:EMB2770 "EMBRYO DEFECTIVE 2770" species:3702
"Arabidopsis thaliana" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009409 "response to cold"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 EMBL:CP002687 GO:GO:0009409
Gene3D:1.25.40.10 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398
EMBL:AL161496 EMBL:AF071527 GO:GO:0019252 HOGENOM:HOG000116247
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GO:GO:0009568 EMBL:AY059720 EMBL:AY142510 IPI:IPI00530735
PIR:E85043 RefSeq:NP_192252.1 UniGene:At.3947
ProteinModelPortal:Q9ZT71 SMR:Q9ZT71 STRING:Q9ZT71 PRIDE:Q9ZT71
EnsemblPlants:AT4G03430.1 GeneID:827925 KEGG:ath:AT4G03430
TAIR:At4g03430 InParanoid:Q9ZT71 PhylomeDB:Q9ZT71
ProtClustDB:CLSN2685941 Genevestigator:Q9ZT71 Uniprot:Q9ZT71
Length = 1029
Score = 1468 (521.8 bits), Expect = 3.6e-198, Sum P(2) = 3.6e-198
Identities = 308/545 (56%), Positives = 382/545 (70%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKS 233
I KG + P + +WLEA +L E K V+ KG+ IP SVRLW EL +++ +
Sbjct: 440 IAKGVKLIPNSVKLWLEAAKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARI 499
Query: 234 RVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLE------ 287
+L A++ P + LW AL + + E++ +L++A E P + +W+ A+LE
Sbjct: 500 -LLHRAVECCPLHLELWVALARLETYAESKKVLNKAREKLPKEPAIWITAAKLEEANGKL 558
Query: 288 -----TYGVARSVLNKARKKLPKERAI-----WIAAAKLEEANGNTSMVGKIIERGIRAL 337
+ ++++ K L +E + W++ A+ E G+ + II+ I
Sbjct: 559 DEANDNTAMVGKIIDRGIKTLQREGVVIDRENWMSEAEACERVGSVATCQAIIKNTIGIG 618
Query: 338 QGEEVVIDRD-TWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKA 396
EE DR TW+ +DA+ECKKRGSIETARAI++HA +VFLTKKSIWLKA
Sbjct: 619 VEEE---DRKRTWV----------ADADECKKRGSIETARAIYAHALSVFLTKKSIWLKA 665
Query: 397 AQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456
AQLEK+HGSRESL ALLRKAVTY PQAEVLWLMGAKEKWLAGDVPAAR ILQEAYA IPN
Sbjct: 666 AQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPN 725
Query: 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEE 516
SEEIWLAAFKLEFEN+E ERARMLLAKAR+ GGTERVWMKSAIVERELGN EER + E
Sbjct: 726 SEEIWLAAFKLEFENKEPERARMLLAKARERGGTERVWMKSAIVERELGNVEEERRLLNE 785
Query: 517 GLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN 576
GLK+FP+FF LWLMLGQLEER HL++A++AY +G CP+CIPLW SLA+LEEK NGLN
Sbjct: 786 GLKQFPTFFKLWLMLGQLEERFKHLEQARKAYDTGLKHCPHCIPLWLSLADLEEKVNGLN 845
Query: 577 GLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL 636
KARA+L+ AR KNP E+WLA IRAE +H NK+EA+ ++KALQ CP SGILWA
Sbjct: 846 ---KARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGILWAAD 902
Query: 637 IKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696
I+M P RK+K DA+ K DRDPHV AVAKLFW D+KV+KAR WF +AV++ PD GDF
Sbjct: 903 IEMAPRPRRKTKSIDAMKKCDRDPHVTIAVAKLFWQDKKVEKARAWFERAVTVGPDIGDF 962
Query: 697 WALYY 701
WAL+Y
Sbjct: 963 WALFY 967
Score = 1060 (378.2 bits), Expect = 4.9e-155, Sum P(2) = 4.9e-155
Identities = 243/594 (40%), Positives = 343/594 (57%)
Query: 89 ESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILK 148
++ VTDLTAVGEGRG +L+LKLD +SDSV+G TVVD GYLT + +K TT+ E+ D +
Sbjct: 312 QTPVTDLTAVGEGRGTVLSLKLDNLSDSVSGQTVVDPKGYLTDLKSMKRTTDEEIYDRNR 371
Query: 149 ARKIVRA------------IQXXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLA 196
AR + ++ I I +GC CPKNEDVWLEACRLA
Sbjct: 372 ARLLYKSLTQSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEECPKNEDVWLEACRLA 431
Query: 197 RPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEI 256
P++AKGV+AKGV+ IP SV+LWL+AA+L+HD NKSRVLR L+ IPDSVRLWKA+VE+
Sbjct: 432 NPEDAKGVIAKGVKLIPNSVKLWLEAAKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVEL 491
Query: 257 SSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKL 316
++EE+ARILLHRAVECCPL +ELW+ALARLETY ++ VLNKAR+KLPKE AIWI AAKL
Sbjct: 492 ANEEDARILLHRAVECCPLHLELWVALARLETYAESKKVLNKAREKLPKEPAIWITAAKL 551
Query: 317 EEANG-------NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKR 369
EEANG NT+MVGKII+RGI+ LQ E VVIDR+ WM S+AE C++
Sbjct: 552 EEANGKLDEANDNTAMVGKIIDRGIKTLQREGVVIDRENWM----------SEAEACERV 601
Query: 370 GSIETARAIFSHACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVL 426
GS+ T +AI + + + +K W+ A K GS E+ A+ A++ F + +
Sbjct: 602 GSVATCQAIIKNTIGIGVEEEDRKRTWVADADECKKRGSIETARAIYAHALSVFLTKKSI 661
Query: 427 WLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKA-R 485
WL A+ + G + +L++A +P +E +WL K ++ ++ AR +L +A
Sbjct: 662 WLKAAQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYA 721
Query: 486 DMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAK 545
+ +E +W+ + +E E R + + +R + +W+ +E LG+++E +
Sbjct: 722 AIPNSEEIWLAAFKLEFENKEPERARMLLAKARERGGTE-RVWMKSAIVERELGNVEEER 780
Query: 546 EAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605
G Q P LW L LEE+ L +AR P +WL+
Sbjct: 781 RLLNEGLKQFPTFFKLWLMLGQLEER---FKHLEQARKAYDTGLKHCPHCIPLWLSLADL 837
Query: 606 ESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRD 659
E K +A + + A +K P LW I+ HD K + + + K+ +D
Sbjct: 838 EEKVNGLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQD 891
Score = 473 (171.6 bits), Expect = 3.6e-198, Sum P(2) = 3.6e-198
Identities = 94/161 (58%), Positives = 125/161 (77%)
Query: 1 ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPV 60
A+L+EEI+ YR NP I E+F DLK KL T+ A EW+ IPEIGDYS NK+K+FESFVP+
Sbjct: 219 AKLKEEIEKYRASNPKITEQFADLKRKLHTLSADEWDSIPEIGDYSLRNKKKKFESFVPI 278
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGGAESV-----VTDLTAVGEGRGKILTLKLDGISD 115
PD+LL+KA++E++ V+ALDP SRAAGG+E+ VTDLTAVGEGRG +L+LKLD +SD
Sbjct: 279 PDTLLEKAKKEKELVMALDPKSRAAGGSETPWGQTPVTDLTAVGEGRGTVLSLKLDNLSD 338
Query: 116 SVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAI 156
SV+G TVVD GYLT + +K TT+ E+ D +AR + +++
Sbjct: 339 SVSGQTVVDPKGYLTDLKSMKRTTDEEIYDRNRARLLYKSL 379
Score = 244 (91.0 bits), Expect = 1.5e-63, Sum P(2) = 1.5e-63
Identities = 112/494 (22%), Positives = 209/494 (42%)
Query: 182 CPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH-----DKAN-KSRV 235
CP + ++W+ RL E+K V+ K ++PK +W+ AA+L+ D+AN + +
Sbjct: 508 CPLHLELWVALARLETYAESKKVLNKAREKLPKEPAIWITAAKLEEANGKLDEANDNTAM 567
Query: 236 LRMALDEIPDSVRLWKALVEIS---SEEEARILLHRAVECCPLDVELWLALA-----RLE 287
+ +D +++ +++ SE EA + +V C ++ + + R
Sbjct: 568 VGKIIDRGIKTLQREGVVIDRENWMSEAEACERVG-SVATCQAIIKNTIGIGVEEEDRKR 626
Query: 288 TYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD 347
T+ VA + K R + RAI+ A + + + +E+ + + + ++ +
Sbjct: 627 TW-VADADECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKA 685
Query: 348 -TWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSR 406
T++ +AE+ G A+E G + ARAI A + IWL A +LE +
Sbjct: 686 VTYVPQAEVLWLMG--AKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENKEP 743
Query: 407 ESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFK 466
E LL KA E +W+ A + G+V R +L E P ++WL +
Sbjct: 744 ERARMLLAKARER-GGTERVWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQ 802
Query: 467 LEFENRELERARMLLAKARDMGGTE-----RVWMKSAIVERELGNNAEERGFIEEGLKRF 521
LE + LE+AR KA D G +W+ A +E ++ + R + K+
Sbjct: 803 LEERFKHLEQAR----KAYDTGLKHCPHCIPLWLSLADLEEKVNGLNKARAILTTARKKN 858
Query: 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKA 581
P LWL + E R + +EA+ CP LW A++E K
Sbjct: 859 PGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGILW--AADIEMAPRPRR---KT 913
Query: 582 RAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641
+++ ++ + +P + +A + + ++A ++ +A+ P+ G WA K
Sbjct: 914 KSIDAMKKCDR--DPHVTIAVAKLFWQDKKVEKARAWFERAVTVGPDIGDFWALFYKFEL 971
Query: 642 HHDRKSKGKDALVK 655
H K+ + K
Sbjct: 972 QHGSDEDRKEVVAK 985
Score = 202 (76.2 bits), Expect = 4.0e-59, Sum P(2) = 4.0e-59
Identities = 110/495 (22%), Positives = 207/495 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRL----ARPDEAKGVVAKGVRQIPKSVR-LWLQAAELDHDK 229
+ K PK +W+ A +L + DEA A + I + ++ L + +D +
Sbjct: 531 LNKAREKLPKEPAIWITAAKLEEANGKLDEANDNTAMVGKIIDRGIKTLQREGVVIDREN 590
Query: 230 ANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETY 289
+ + + K + I EEE R A D + +ET
Sbjct: 591 WMSEAEACERVGSVATCQAIIKNTIGIGVEEEDRKRTWVA------DADECKKRGSIET- 643
Query: 290 GVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DR 346
AR++ A +++IW+ AA+LE+++G+ + ++ + + + EV+ +
Sbjct: 644 --ARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKAVTYVPQAEVLWLMGAK 701
Query: 347 DTWMK-----EAEIAEKAGS---DAEEC-----K---KRGSIETARAIFSHACTVFLTKK 390
+ W+ I ++A + ++EE K + E AR + + A T++
Sbjct: 702 EKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENKEPERARMLLAKARERGGTER 761
Query: 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLM-GAKEKWLAGDVPAARDILQE 449
+W+K+A +E+ G+ E LL + + FP LWLM G E+ + AR
Sbjct: 762 -VWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLEERFK-HLEQARKAYDT 819
Query: 450 AYATIPNSEEIWLAAFKLEFENRELERARMLLAKAR--DMGGTERVWMKSAIVERELGNN 507
P+ +WL+ LE + L +AR +L AR + GG E +W+ + E N
Sbjct: 820 GLKHCPHCIPLWLSLADLEEKVNGLNKARAILTTARKKNPGGAE-LWLAAIRAELRHDNK 878
Query: 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567
E + + L+ P LW ++ R ++ +A + C++ P+ + ++A
Sbjct: 879 REAEHLMSKALQDCPKSGILWAADIEMAPRPRRKTKSIDAMKK-CDRDPH---VTIAVAK 934
Query: 568 L--EEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQK 625
L ++K+ + KARA A P + W + E +HG+ ++ +AK +
Sbjct: 935 LFWQDKK-----VEKARAWFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVAC 989
Query: 626 CPNSGILWAELIKMV 640
P G W + K V
Sbjct: 990 EPKHGEKWQAISKAV 1004
Score = 41 (19.5 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 652 ALVKSD-RDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFW 697
+L +S+ ++P+ + A A++ D K+ AR + P D W
Sbjct: 378 SLTQSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEECPKNEDVW 424
>UNIPROTKB|F1N9U0 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0050681 "androgen receptor
binding" evidence=IEA] [GO:0071001 "U4/U6 snRNP" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:AADN02019178 EMBL:AADN02019179
EMBL:AADN02019180 IPI:IPI00589966 Ensembl:ENSGALT00000009656
Uniprot:F1N9U0
Length = 945
Score = 1088 (388.1 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 239/530 (45%), Positives = 327/530 (61%)
Query: 183 PKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALD 241
P++ +++ A L AK V+ K + +P SVRLW A EL+ + + + R A++
Sbjct: 374 PQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSR-AVE 432
Query: 242 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG----VARSVLN 297
P SV LW AL + + E AR +L++A E P D +W+ A+LE + +++
Sbjct: 433 CCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIID 492
Query: 298 KARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD-TWMK 351
+A L R WI A+ + G+ + I+ R + + EE DR TWM+
Sbjct: 493 RAITSLRANGVEINREQWIQDAEECDKAGSVATCQAIM-RAVIGIGIEEE--DRKHTWME 549
Query: 352 EAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411
DA+ C ++E ARAI+++A VF +KKS+WL+AA EK HG+RESL A
Sbjct: 550 ----------DADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA 599
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471
LL++AV + P+AEVLWLMGAK KWLAGDVPAAR IL A+ PNSEEIWLAA KLE EN
Sbjct: 600 LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEN 659
Query: 472 RELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531
E ERAR LLAKAR T RV+MKS +E LGN A + EE L+ + F LW+M
Sbjct: 660 NEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMK 719
Query: 532 GQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591
GQ+EE+ ++ A+EAY G +CP+ IPLW L+ LEEK + L++ARA+L +RLK
Sbjct: 720 GQIEEQKELVERAREAYNQGLKKCPHSIPLWLLLSRLEEK---VGQLTRARAILEKSRLK 776
Query: 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKD 651
NP N ++WL ++R E + G K A++ +AKALQ+CPNSGILW+E I + RK+K D
Sbjct: 777 NPKNADLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVD 836
Query: 652 ALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
AL K + DPHV AVAKLFW +RK+ KAR WF++ V +D D GD WA +Y
Sbjct: 837 ALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFY 886
Score = 872 (312.0 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 210/564 (37%), Positives = 308/564 (54%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI KAR ++
Sbjct: 243 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 302
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I KG MCPK+EDVWLEA RL D A
Sbjct: 303 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 362
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K VVA+ VR +P+SVR++++AAEL+ D K RVLR AL+ +P+SVRLWKA VE+ E+
Sbjct: 363 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 422
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARI+L RAVECCP VELWLALARLETY AR VLNKAR+ +P +R IWI AAKLEEANG
Sbjct: 423 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 482
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
NT MV KII+R I +L+ V I+R+ W++ DAEEC K GS+ T +AI
Sbjct: 483 NTQMVEKIIDRAITSLRANGVEINREQWIQ----------DAEECDKAGSVATCQAIMRA 532
Query: 382 ACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + +K W++ A H + E A+ A+ FP + +WL A + G
Sbjct: 533 VIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHG 592
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKS 497
+ +LQ A A P +E +WL K ++ ++ AR +LA A +E +W+ +
Sbjct: 593 TRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAA 652
Query: 498 AIVERELGNNAEERG--FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555
+E E NN ER + + P+ +++ +LE LG++ A+E +
Sbjct: 653 VKLESE--NNEYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNIAAAQELCEEALRHY 709
Query: 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEA 615
+ LW +EE++ L + +AR + K P + +WL R E K G A
Sbjct: 710 EDFPKLWMMKGQIEEQKE-L--VERAREAYNQGLKKCPHSIPLWLLLSRLEEKVGQLTRA 766
Query: 616 DSFIAKALQKCPNSGILWAELIKM 639
+ + K+ K P + LW E +++
Sbjct: 767 RAILEKSRLKNPKNADLWLESVRL 790
Score = 202 (76.2 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 100/493 (20%), Positives = 205/493 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +W+ A +L + +V K + + S+R E++ ++ +
Sbjct: 457 LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA--NGVEINREQWIQDA 514
Query: 235 VLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARS 294
+ + +A++ I EEE R H +E D + +A LE AR+
Sbjct: 515 EECDKAGSVATCQAIMRAVIGIGIEEEDR--KHTWME----DADSCVAHNALEC---ARA 565
Query: 295 VLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMK 351
+ A + P ++++W+ AA E+ +G + +++R + EV+ + W+
Sbjct: 566 IYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLA 625
Query: 352 E--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWLK 395
+A +A ++EE + E AR + + A + T + +++K
Sbjct: 626 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMK 684
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455
+ +LE G+ + L +A+ ++ LW+M + + V AR+ + P
Sbjct: 685 SVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQKELVERAREAYNQGLKKCP 744
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNNAEERGFI 514
+S +WL +LE + +L RAR +L K+R +W++S +E G +
Sbjct: 745 HSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNADLWLESVRLEYRAGLKNIANTLM 804
Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574
+ L+ P+ LW LE R ++ +A + C P+ + L E K
Sbjct: 805 AKALQECPNSGILWSEAIFLEARPQRKTKSVDALKK-CEHDPHVLLAVAKLFWSERK--- 860
Query: 575 LNGLSKARAVLS-VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
++KAR ++ + L + W + E +HG +++ + + P G LW
Sbjct: 861 ---ITKAREWFHRTVKIDSDLG-DAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELW 916
Query: 634 AELIKMVPHHDRK 646
++ K + + +K
Sbjct: 917 CDVSKDIVNWQKK 929
Score = 175 (66.7 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL V +EW IPE+GD +R R+E PV
Sbjct: 127 REKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPV 186
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGG 87
PDS K Q ++ ++DP GG
Sbjct: 187 PDSFFAKHLQSGENHTSVDPRQTQFGG 213
Score = 125 (49.1 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
+N + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 292 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 351
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG 694
E ++ P K+ A+ + ++ A+L + + + KA+ P++
Sbjct: 352 EAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAEL---ETDIRAKKRVLRKALEHVPNSV 408
Query: 695 DFW 697
W
Sbjct: 409 RLW 411
>UNIPROTKB|E2RPW8 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 Gene3D:1.25.40.10 GO:GO:0000398
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 GeneTree:ENSGT00550000075016 EMBL:AAEX03014173
EMBL:AAEX03014174 RefSeq:XP_534481.3 Ensembl:ENSCAFT00000020914
GeneID:477289 KEGG:cfa:477289 Uniprot:E2RPW8
Length = 941
Score = 1085 (387.0 bits), Expect = 4.4e-126, Sum P(2) = 4.4e-126
Identities = 237/530 (44%), Positives = 326/530 (61%)
Query: 183 PKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALD 241
P++ +++ A L AK V+ K + +P SVRLW A EL+ + + + R A++
Sbjct: 370 PQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSR-AVE 428
Query: 242 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG----VARSVLN 297
P SV LW AL + + E AR +L++A E P D +W+ A+LE + +++
Sbjct: 429 CCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIID 488
Query: 298 KARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD-TWMK 351
+A L R WI A+ + G+ + ++ R + + EE DR TWM+
Sbjct: 489 RAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVM-RAVIGIGIEEE--DRKHTWME 545
Query: 352 EAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411
DA+ C ++E ARAI+++A VF +KKS+WL+AA EK HG+RESL A
Sbjct: 546 ----------DADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA 595
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471
LL++AV + P+AEVLWLMGAK KWLAGDVPAAR IL A+ PNSEEIWLAA KLE EN
Sbjct: 596 LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEN 655
Query: 472 RELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531
E ERAR LLAKAR T RV+MKS +E LGN A + EE L+ + F LW+M
Sbjct: 656 NEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMK 715
Query: 532 GQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591
GQ+EE+ ++ A+EAY G +CP+ PLW L+ LEEK + L++ARA+L +RLK
Sbjct: 716 GQIEEQEELMERAREAYNQGLKKCPHSTPLWLLLSRLEEK---VGQLTRARAILEKSRLK 772
Query: 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKD 651
NP NP +WL ++R E + G K A++ +AKALQ+CPNSG+LW+E I + RK+K D
Sbjct: 773 NPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSVD 832
Query: 652 ALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
AL K + DPHV AVAKLFW +RK+ KAR WF++ V +D D GD WA +Y
Sbjct: 833 ALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFY 882
Score = 869 (311.0 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 209/564 (37%), Positives = 307/564 (54%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K VVA+ VR +P+SVR++++AAEL+ D K RVLR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARI+L RAVECCP VELWLALARLETY AR VLNKAR+ +P +R IWI AAKLEEANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
NT MV KII+R I +L+ V I+R+ W++ DAEEC K GS+ T +A+
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQ----------DAEECDKAGSVATCQAVMRA 528
Query: 382 ACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + +K W++ A H + E A+ A+ FP + +WL A + G
Sbjct: 529 VIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHG 588
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKS 497
+ +LQ A A P +E +WL K ++ ++ AR +LA A +E +W+ +
Sbjct: 589 TRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAA 648
Query: 498 AIVERELGNNAEERG--FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555
+E E NN ER + + P+ +++ +LE LG++ A+E +
Sbjct: 649 VKLESE--NNEYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNIAAAQELCEEALRHY 705
Query: 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEA 615
+ LW +EE+ L + +AR + K P + +WL R E K G A
Sbjct: 706 EDFPKLWMMKGQIEEQEE-L--MERAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRA 762
Query: 616 DSFIAKALQKCPNSGILWAELIKM 639
+ + K+ K P + LW E +++
Sbjct: 763 RAILEKSRLKNPKNPGLWLESVRL 786
Score = 200 (75.5 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 100/493 (20%), Positives = 204/493 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +W+ A +L + +V K + + S+R E++ ++ +
Sbjct: 453 LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA--NGVEINREQWIQDA 510
Query: 235 VLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARS 294
+ + +A++ I EEE R H +E D + +A LE AR+
Sbjct: 511 EECDKAGSVATCQAVMRAVIGIGIEEEDR--KHTWME----DADSCVAHNALEC---ARA 561
Query: 295 VLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMK 351
+ A + P ++++W+ AA E+ +G + +++R + EV+ + W+
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLA 621
Query: 352 E--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWLK 395
+A +A ++EE + E AR + + A + T + +++K
Sbjct: 622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMK 680
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455
+ +LE G+ + L +A+ ++ LW+M + + + AR+ + P
Sbjct: 681 SVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQEELMERAREAYNQGLKKCP 740
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNNAEERGFI 514
+S +WL +LE + +L RAR +L K+R +W++S +E G +
Sbjct: 741 HSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLM 800
Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574
+ L+ P+ LW LE R ++ +A + C P+ + L E K
Sbjct: 801 AKALQECPNSGVLWSEAIFLEARPQRKTKSVDALKK-CEHDPHVLLAVAKLFWSERK--- 856
Query: 575 LNGLSKARAVLS-VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
++KAR ++ + L + W + E +HG +++ + + P G LW
Sbjct: 857 ---ITKAREWFHRTVKIDSDLG-DAWAFFYKFELQHGTEEQREEVRRRCENAEPRHGELW 912
Query: 634 AELIKMVPHHDRK 646
+ K + + RK
Sbjct: 913 CAVSKDIANWQRK 925
Score = 174 (66.3 bits), Expect = 4.4e-126, Sum P(2) = 4.4e-126
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL V +EW IPE+GD +R R+E PV
Sbjct: 123 REKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPV 182
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGG 87
PDS K Q ++ ++DP GG
Sbjct: 183 PDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 125 (49.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
+N + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 288 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 347
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG 694
E ++ P K+ A+ + ++ A+L + + + KA+ P++
Sbjct: 348 EAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAEL---ETDIRAKKRVLRKALEHVPNSV 404
Query: 695 DFW 697
W
Sbjct: 405 RLW 407
>MGI|MGI:1922946 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA splicing factor 6 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006403 "RNA localization" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0071001 "U4/U6 snRNP" evidence=ISO] [GO:0071013 "catalytic step
2 spliceosome" evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 Pfam:PF13181 SMART:SM00386 MGI:MGI:1922946
GO:GO:0005634 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0050681 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 EMBL:CH466626 GO:GO:0006403 ChiTaRS:PRPF6
GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 EMBL:BC005801
EMBL:BC014869 EMBL:BC023691 EMBL:BC025030 EMBL:AK011639
EMBL:AK145461 EMBL:AK081998 EMBL:AL844529 IPI:IPI00130409
IPI:IPI00229813 RefSeq:NP_598462.1 UniGene:Mm.292001
ProteinModelPortal:Q91YR7 SMR:Q91YR7 STRING:Q91YR7
PhosphoSite:Q91YR7 PaxDb:Q91YR7 PRIDE:Q91YR7
Ensembl:ENSMUST00000002529 Ensembl:ENSMUST00000136481 GeneID:68879
KEGG:mmu:68879 UCSC:uc008omy.1 InParanoid:Q3ULJ7 NextBio:328105
Bgee:Q91YR7 CleanEx:MM_PRPF6 Genevestigator:Q91YR7
GermOnline:ENSMUSG00000002455 Uniprot:Q91YR7
Length = 941
Score = 1084 (386.6 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 239/531 (45%), Positives = 327/531 (61%)
Query: 183 PKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALD 241
P++ +++ A L AK V+ K + +P SVRLW A EL+ + + + R A++
Sbjct: 370 PQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSR-AVE 428
Query: 242 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG----VARSVLN 297
P SV LW AL + + E AR +L++A E P D +W+ A+LE + +++
Sbjct: 429 CCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIID 488
Query: 298 KARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD-TWMK 351
+A L R WI A+ + G+ + ++ R + + EE DR TWM+
Sbjct: 489 RAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVM-RAVIGIGIEEE--DRKHTWME 545
Query: 352 EAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411
DA+ C ++E ARAI+++A VF +KKS+WL+AA EK HG+RESL A
Sbjct: 546 ----------DADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA 595
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471
LL++AV + P+AEVLWLMGAK KWLAGDVPAAR IL A+ PNSEEIWLAA KLE EN
Sbjct: 596 LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEN 655
Query: 472 RELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531
E ERAR LLAKAR T RV+MKS +E LGN + + EE L+ + F LW+M
Sbjct: 656 NEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMK 715
Query: 532 GQLEERLGHLKE-AKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590
GQ+EE+ G L E A+EAY G +CP+ PLW L+ LEEK + L++ARA+L +RL
Sbjct: 716 GQIEEQ-GELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEK---IGQLTRARAILEKSRL 771
Query: 591 KNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGK 650
KNP NP +WL ++R E + G K A++ +AKALQ+CPNSGILW+E + + RK+K
Sbjct: 772 KNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSV 831
Query: 651 DALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
DAL K + DPHV AVAKLFW +RK+ KAR WF++ V +D D GD WA +Y
Sbjct: 832 DALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFY 882
Score = 868 (310.6 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 209/564 (37%), Positives = 307/564 (54%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K VVA+ VR +P+SVR++++AAEL+ D K RVLR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARI+L RAVECCP VELWLALARLETY AR VLNKAR+ +P +R IWI AAKLEEANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
NT MV KII+R I +L+ V I+R+ W++ DAEEC + GS+ T +A+
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQ----------DAEECDRAGSVATCQAVMRA 528
Query: 382 ACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + +K W++ A H + E A+ A+ FP + +WL A + G
Sbjct: 529 VIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHG 588
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKS 497
+ +LQ A A P +E +WL K ++ ++ AR +LA A +E +W+ +
Sbjct: 589 TRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAA 648
Query: 498 AIVERELGNNAEERG--FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555
+E E NN ER + + P+ +++ +LE LG++ A+E +
Sbjct: 649 VKLESE--NNEYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNISAAQELCEEALRHY 705
Query: 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEA 615
+ LW +EE+ L + KAR + K P + +WL R E K G A
Sbjct: 706 EDFPKLWMMKGQIEEQGE-L--MEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRA 762
Query: 616 DSFIAKALQKCPNSGILWAELIKM 639
+ + K+ K P + LW E +++
Sbjct: 763 RAILEKSRLKNPKNPGLWLESVRL 786
Score = 203 (76.5 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 100/493 (20%), Positives = 204/493 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +W+ A +L + +V K + + S+R E++ ++ +
Sbjct: 453 LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA--NGVEINREQWIQDA 510
Query: 235 VLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARS 294
+ + +A++ I EEE R H +E D + +A LE AR+
Sbjct: 511 EECDRAGSVATCQAVMRAVIGIGIEEEDR--KHTWME----DADSCVAHNALEC---ARA 561
Query: 295 VLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMK 351
+ A + P ++++W+ AA E+ +G + +++R + EV+ + W+
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLA 621
Query: 352 E--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWLK 395
+A +A ++EE + E AR + + A + T + +++K
Sbjct: 622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMK 680
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455
+ +LE G+ + L +A+ ++ LW+M + + + AR+ + P
Sbjct: 681 SVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCP 740
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNNAEERGFI 514
+S +WL +LE + +L RAR +L K+R +W++S +E G +
Sbjct: 741 HSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLM 800
Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574
+ L+ P+ LW LE R ++ +A + C P+ + L E K
Sbjct: 801 AKALQECPNSGILWSEAVFLEARPQRKTKSVDALKK-CEHDPHVLLAVAKLFWSERK--- 856
Query: 575 LNGLSKARAVLS-VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
++KAR ++ + L + W + E +HG +++ + + P G LW
Sbjct: 857 ---ITKAREWFHRTVKIDSDLG-DAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELW 912
Query: 634 AELIKMVPHHDRK 646
+ K + + RK
Sbjct: 913 CAVSKDITNWQRK 925
Score = 174 (66.3 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL V +EW IPE+GD +R R+E PV
Sbjct: 123 REKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPV 182
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGG 87
PDS K Q ++ ++DP GG
Sbjct: 183 PDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 125 (49.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
+N + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 288 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 347
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG 694
E ++ P K+ A+ + ++ A+L + + + KA+ P++
Sbjct: 348 EAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAEL---ETDIRAKKRVLRKALEHVPNSV 404
Query: 695 DFW 697
W
Sbjct: 405 RLW 407
>UNIPROTKB|Q2KJJ0 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071001 "U4/U6
snRNP" evidence=IEA] [GO:0050681 "androgen receptor binding"
evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] [GO:0006403 "RNA
localization" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
EMBL:AAFC03042419 EMBL:BC105318 IPI:IPI00702400
RefSeq:NP_001039840.1 UniGene:Bt.40556 ProteinModelPortal:Q2KJJ0
STRING:Q2KJJ0 Ensembl:ENSBTAT00000015480 GeneID:534228
KEGG:bta:534228 CTD:24148 GeneTree:ENSGT00550000075016
HOVERGEN:HBG023330 InParanoid:Q2KJJ0 OrthoDB:EOG4FTVZW
NextBio:20876316 ArrayExpress:Q2KJJ0 Uniprot:Q2KJJ0
Length = 941
Score = 1083 (386.3 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 237/530 (44%), Positives = 325/530 (61%)
Query: 183 PKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALD 241
P++ +++ A L AK V+ K + +P SVRLW A EL+ + + + R A++
Sbjct: 370 PQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSR-AVE 428
Query: 242 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG----VARSVLN 297
P SV LW AL + + E AR +L++A E P D +W+ A+LE + +++
Sbjct: 429 CCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIID 488
Query: 298 KARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD-TWMK 351
+A L R WI A+ + G+ + ++ R + + EE DR TWM+
Sbjct: 489 RAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVM-RAVIGIGIEEE--DRKHTWME 545
Query: 352 EAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411
DA+ C ++E ARAI+++A VF +KKS+WL+AA EK HG+RESL A
Sbjct: 546 ----------DADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA 595
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471
LL++AV + P+AEVLWLMGAK KWLAGDVPAAR IL A+ PNSEEIWLAA KLE EN
Sbjct: 596 LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEN 655
Query: 472 RELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531
E ERAR LLAKAR T RV+MKS +E LGN + EE LK + F LW+M
Sbjct: 656 NEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMK 715
Query: 532 GQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591
GQ+EE+ +++A+EAY G +CP+ PLW L+ LEEK + L++ARA+L +RLK
Sbjct: 716 GQIEEQEELVEKAREAYNQGLKKCPHSTPLWLLLSRLEEK---VGQLTRARAILEKSRLK 772
Query: 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKD 651
NP NP +WL ++R E + G K A + +AKALQ+CPNSG+LW+E I + RK+K D
Sbjct: 773 NPKNPGLWLESVRLEYRAGLKNIASTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSVD 832
Query: 652 ALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
AL K + DPHV AVAKLFW +RK+ KAR WF++ V +D D GD WA +Y
Sbjct: 833 ALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFY 882
Score = 872 (312.0 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 211/564 (37%), Positives = 307/564 (54%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K VVA+ VR +P+SVR++++AAEL+ D K RVLR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARI+L RAVECCP VELWLALARLETY AR VLNKAR+ +P +R IWI AAKLEEANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
NT MV KII+R I +L+ V I+R+ W++ DAEEC K GS+ T +A+
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQ----------DAEECDKAGSVATCQAVMRA 528
Query: 382 ACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + +K W++ A H + E A+ A+ FP + +WL A + G
Sbjct: 529 VIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHG 588
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKS 497
+ +LQ A A P +E +WL K ++ ++ AR +LA A +E +W+ +
Sbjct: 589 TRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAA 648
Query: 498 AIVERELGNNAEERG--FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555
+E E NN ER + + P+ +++ +LE LG+L A+E +
Sbjct: 649 VKLESE--NNEYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNLVAAQELCEEALKHY 705
Query: 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEA 615
+ LW +EE+ L + KAR + K P + +WL R E K G A
Sbjct: 706 EDFPKLWMMKGQIEEQEE-L--VEKAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRA 762
Query: 616 DSFIAKALQKCPNSGILWAELIKM 639
+ + K+ K P + LW E +++
Sbjct: 763 RAILEKSRLKNPKNPGLWLESVRL 786
Score = 200 (75.5 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 101/493 (20%), Positives = 203/493 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +W+ A +L + +V K + + S+R E++ ++ +
Sbjct: 453 LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA--NGVEINREQWIQDA 510
Query: 235 VLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARS 294
+ + +A++ I EEE R H +E D + +A LE AR+
Sbjct: 511 EECDKAGSVATCQAVMRAVIGIGIEEEDR--KHTWME----DADSCVAHNALEC---ARA 561
Query: 295 VLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMK 351
+ A + P ++++W+ AA E+ +G + +++R + EV+ + W+
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLA 621
Query: 352 E--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWLK 395
+A +A ++EE + E AR + + A + T + +++K
Sbjct: 622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMK 680
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455
+ +LE G+ + L +A+ ++ LW+M + + V AR+ + P
Sbjct: 681 SVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMKGQIEEQEELVEKAREAYNQGLKKCP 740
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNNAEERGFI 514
+S +WL +LE + +L RAR +L K+R +W++S +E G +
Sbjct: 741 HSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIASTLM 800
Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574
+ L+ P+ LW LE R ++ +A + C P+ + L E K
Sbjct: 801 AKALQECPNSGVLWSEAIFLEARPQRKTKSVDALKK-CEHDPHVLLAVAKLFWSERK--- 856
Query: 575 LNGLSKARAVLS-VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
++KAR ++ + L + W + E +HG +++ + + P G LW
Sbjct: 857 ---ITKAREWFHRTVKIDSDLG-DAWAFFYKFELQHGTEEQREEVRRRCENAEPRHGELW 912
Query: 634 AELIKMVPHHDRK 646
K + + RK
Sbjct: 913 CATSKDIANWQRK 925
Score = 174 (66.3 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL V +EW IPE+GD +R R+E PV
Sbjct: 123 REKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPV 182
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGG 87
PDS K Q ++ ++DP GG
Sbjct: 183 PDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 125 (49.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
+N + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 288 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 347
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG 694
E ++ P K+ A+ + ++ A+L + + + KA+ P++
Sbjct: 348 EAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAEL---ETDIRAKKRVLRKALEHVPNSV 404
Query: 695 DFW 697
W
Sbjct: 405 RLW 407
>RGD|1307103 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005682 "U5 snRNP" evidence=IEA;ISO] [GO:0006403 "RNA
localization" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA;ISO] [GO:0050681
"androgen receptor binding" evidence=IEA;ISO] [GO:0071001 "U4/U6
snRNP" evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 RGD:1307103 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW
EMBL:CH474066 EMBL:BC128779 IPI:IPI00368842 RefSeq:NP_001073234.1
UniGene:Rn.17062 ProteinModelPortal:A1A5S1 STRING:A1A5S1
Ensembl:ENSRNOT00000021722 GeneID:366276 KEGG:rno:366276
UCSC:RGD:1307103 InParanoid:A1A5S1 NextBio:689115
Genevestigator:A1A5S1 Uniprot:A1A5S1
Length = 941
Score = 1083 (386.3 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 239/531 (45%), Positives = 326/531 (61%)
Query: 183 PKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALD 241
P++ +++ A L AK V+ K + +P SVRLW A EL+ + + + R A++
Sbjct: 370 PQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSR-AVE 428
Query: 242 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG----VARSVLN 297
P SV LW AL + + E AR +L++A E P D +W+ A+LE + +++
Sbjct: 429 CCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIID 488
Query: 298 KARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD-TWMK 351
+A L R WI A+ + G+ + ++ R + + EE DR TWM+
Sbjct: 489 RAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVM-RAVIGIGIEEE--DRKHTWME 545
Query: 352 EAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411
DA+ C ++E ARAI+++A VF +KKS+WL+AA EK HG+RESL A
Sbjct: 546 ----------DADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA 595
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471
LL++AV + P+AEVLWLMGAK KWLAGDVPAAR IL A+ PNSEEIWLAA KLE EN
Sbjct: 596 LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEN 655
Query: 472 RELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531
E ERAR LLAKAR T RV+MKS +E LGN + EE L+ + F LW+M
Sbjct: 656 NEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMK 715
Query: 532 GQLEERLGHLKE-AKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590
GQ+EE+ G L E A+EAY G +CP+ PLW L+ LEEK + L++ARA+L +RL
Sbjct: 716 GQIEEQ-GELMERAREAYNQGLKKCPHSTPLWLLLSRLEEK---IGQLTRARAILEKSRL 771
Query: 591 KNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGK 650
KNP NP +WL ++R E + G K A++ +AKALQ+CPNSGILW+E + + RK+K
Sbjct: 772 KNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSV 831
Query: 651 DALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
DAL K + DPHV AVAKLFW +RK+ KAR WF++ V +D D GD WA +Y
Sbjct: 832 DALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFY 882
Score = 864 (309.2 bits), Expect = 9.5e-103, Sum P(2) = 9.5e-103
Identities = 208/564 (36%), Positives = 307/564 (54%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K VVA+ VR +P+SVR++++AAEL+ D K RVLR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARI+L RAVECCP VELWLALARLETY AR VLNKAR+ +P +R IWI AAKLEEANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
NT MV KII+R I +L+ V I+R+ W++ DAEEC + GS+ T +A+
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQ----------DAEECDRAGSVATCQAVMRA 528
Query: 382 ACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + +K W++ A H + E A+ A+ FP + +WL A + G
Sbjct: 529 VIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHG 588
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKS 497
+ +LQ A A P +E +WL K ++ ++ AR +LA A +E +W+ +
Sbjct: 589 TRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAA 648
Query: 498 AIVERELGNNAEERG--FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555
+E E NN ER + + P+ +++ +LE LG++ A+E +
Sbjct: 649 VKLESE--NNEYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNITAAQELCEEALRHY 705
Query: 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEA 615
+ LW +EE+ L + +AR + K P + +WL R E K G A
Sbjct: 706 EDFPKLWMMKGQIEEQGE-L--MERAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRA 762
Query: 616 DSFIAKALQKCPNSGILWAELIKM 639
+ + K+ K P + LW E +++
Sbjct: 763 RAILEKSRLKNPKNPGLWLESVRL 786
Score = 202 (76.2 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
Identities = 100/493 (20%), Positives = 204/493 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +W+ A +L + +V K + + S+R E++ ++ +
Sbjct: 453 LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA--NGVEINREQWIQDA 510
Query: 235 VLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARS 294
+ + +A++ I EEE R H +E D + +A LE AR+
Sbjct: 511 EECDRAGSVATCQAVMRAVIGIGIEEEDR--KHTWME----DADSCVAHNALEC---ARA 561
Query: 295 VLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMK 351
+ A + P ++++W+ AA E+ +G + +++R + EV+ + W+
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLA 621
Query: 352 E--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWLK 395
+A +A ++EE + E AR + + A + T + +++K
Sbjct: 622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMK 680
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455
+ +LE G+ + L +A+ ++ LW+M + + + AR+ + P
Sbjct: 681 SVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMERAREAYNQGLKKCP 740
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNNAEERGFI 514
+S +WL +LE + +L RAR +L K+R +W++S +E G +
Sbjct: 741 HSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLM 800
Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574
+ L+ P+ LW LE R ++ +A + C P+ + L E K
Sbjct: 801 AKALQECPNSGILWSEAVFLEARPQRKTKSVDALKK-CEHDPHVLLAVAKLFWSERK--- 856
Query: 575 LNGLSKARAVLS-VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
++KAR ++ + L + W + E +HG +++ + + P G LW
Sbjct: 857 ---ITKAREWFHRTVKIDSDLG-DAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELW 912
Query: 634 AELIKMVPHHDRK 646
+ K + + RK
Sbjct: 913 CAVSKDITNWQRK 925
Score = 174 (66.3 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL V +EW IPE+GD +R R+E PV
Sbjct: 123 REKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPV 182
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGG 87
PDS K Q ++ ++DP GG
Sbjct: 183 PDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 125 (49.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
+N + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 288 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 347
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG 694
E ++ P K+ A+ + ++ A+L + + + KA+ P++
Sbjct: 348 EAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAEL---ETDIRAKKRVLRKALEHVPNSV 404
Query: 695 DFW 697
W
Sbjct: 405 RLW 407
>ZFIN|ZDB-GENE-030131-2575 [details] [associations]
symbol:prpf6 "PRP6 pre-mRNA processing factor 6
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-030131-2575 GO:GO:0005634 Gene3D:1.25.40.10
GO:GO:0000398 KO:K12855 InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 HOVERGEN:HBG023330 EMBL:BC056710 IPI:IPI00484708
RefSeq:NP_997820.1 UniGene:Dr.150395 ProteinModelPortal:Q6PH55
STRING:Q6PH55 GeneID:323855 KEGG:dre:323855 InParanoid:Q6PH55
NextBio:20808461 ArrayExpress:Q6PH55 Bgee:Q6PH55 Uniprot:Q6PH55
Length = 944
Score = 1075 (383.5 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
Identities = 238/531 (44%), Positives = 324/531 (61%)
Query: 183 PKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALD 241
P++ +++ A L AK V+ K + + KSVRLW A EL+ + + + R A++
Sbjct: 373 PQSVRIYIRAAELETDIRAKKRVLRKALENVSKSVRLWKTAVELEEPEDARIMLSR-AVE 431
Query: 242 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG----VARSVLN 297
P SV LW AL + + E AR +L++A E P D +W+ A+LE + +++
Sbjct: 432 CCPTSVELWLALARLETYENARRVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIID 491
Query: 298 KARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVID--RDTWM 350
+A L R WI A EE + S+V + IRA+ G + + + TWM
Sbjct: 492 RAITSLRANGVEINREQWIQDA--EECDKAGSVV--TCQSVIRAVIGIGIEEEDCKHTWM 547
Query: 351 KEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLI 410
+ DA+ C G++E ARAI++HA VF +KKS+WL+AA EK +G+RESL
Sbjct: 548 E----------DADSCVSHGALECARAIYAHALQVFPSKKSVWLRAAYFEKNNGTRESLE 597
Query: 411 ALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE 470
ALL++AV + P+AEVLWLMGAK KWLAGDVPAAR IL A+ PNSEEIWLAA KLE E
Sbjct: 598 ALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESE 657
Query: 471 NRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLM 530
N E ERAR LLAKAR T RV+MKS +E LGN E LK + F LW+M
Sbjct: 658 NNEYERARRLLAKARSSAPTARVFMKSVRLEWVLGNIEAAHELCTEALKHYEDFPKLWMM 717
Query: 531 LGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590
GQ+EE+ + A+EAY G +CP+ + LW L+ LEEK + L++ARA+L ARL
Sbjct: 718 RGQIEEQSESIDRAREAYNQGLKKCPHSMSLWLLLSRLEEK---VGQLTRARAILEKARL 774
Query: 591 KNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGK 650
KNP +PE+WL ++R E + G K A++ +AKALQ+CPNSGILW+E + + RK+K
Sbjct: 775 KNPQSPELWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSV 834
Query: 651 DALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
DAL K + DPHV AVAKLFW +RK+ KAR WF + V ++PD GD W +Y
Sbjct: 835 DALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDAWGFFY 885
Score = 863 (308.9 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 208/564 (36%), Positives = 305/564 (54%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI KAR ++
Sbjct: 242 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTYGGDISDIKKARLLL 301
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I KG MCPK+EDVWLEA RL D A
Sbjct: 302 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 361
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K VVA+ VR +P+SVR++++AAEL+ D K RVLR AL+ + SVRLWK VE+ E+
Sbjct: 362 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALENVSKSVRLWKTAVELEEPED 421
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARI+L RAVECCP VELWLALARLETY AR VLNKAR+ +P +R IWI AAKLEEANG
Sbjct: 422 ARIMLSRAVECCPTSVELWLALARLETYENARRVLNKARENIPTDRHIWITAAKLEEANG 481
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
NT MV KII+R I +L+ V I+R+ W++ DAEEC K GS+ T +++
Sbjct: 482 NTQMVEKIIDRAITSLRANGVEINREQWIQ----------DAEECDKAGSVVTCQSVIRA 531
Query: 382 ACTVFLTK---KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + + K W++ A +HG+ E A+ A+ FP + +WL A + G
Sbjct: 532 VIGIGIEEEDCKHTWMEDADSCVSHGALECARAIYAHALQVFPSKKSVWLRAAYFEKNNG 591
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKS 497
+ +LQ A A P +E +WL K ++ ++ AR +LA A +E +W+ +
Sbjct: 592 TRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAA 651
Query: 498 AIVERELGNNAEERG--FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555
+E E NN ER + + P+ +++ +LE LG+++ A E
Sbjct: 652 VKLESE--NNEYERARRLLAKARSSAPTA-RVFMKSVRLEWVLGNIEAAHELCTEALKHY 708
Query: 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEA 615
+ LW +EE+ ++ +AR + K P + +WL R E K G A
Sbjct: 709 EDFPKLWMMRGQIEEQSESID---RAREAYNQGLKKCPHSMSLWLLLSRLEEKVGQLTRA 765
Query: 616 DSFIAKALQKCPNSGILWAELIKM 639
+ + KA K P S LW E +++
Sbjct: 766 RAILEKARLKNPQSPELWLESVRL 789
Score = 204 (76.9 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 99/480 (20%), Positives = 200/480 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +W+ A +L + +V K + + S+R E++ ++ +
Sbjct: 456 LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA--NGVEINREQWIQDA 513
Query: 235 VLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARS 294
+ + +A++ I EEE H +E D + ++ LE AR+
Sbjct: 514 EECDKAGSVVTCQSVIRAVIGIGIEEED--CKHTWME----DADSCVSHGALEC---ARA 564
Query: 295 VLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMK 351
+ A + P ++++W+ AA E+ NG + +++R + EV+ + W+
Sbjct: 565 IYAHALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLA 624
Query: 352 E--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWLK 395
+A +A ++EE + E AR + + A + T + +++K
Sbjct: 625 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR-VFMK 683
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455
+ +LE G+ E+ L +A+ ++ LW+M + + + + AR+ + P
Sbjct: 684 SVRLEWVLGNIEAAHELCTEALKHYEDFPKLWMMRGQIEEQSESIDRAREAYNQGLKKCP 743
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGG-TERVWMKSAIVERELGNNAEERGFI 514
+S +WL +LE + +L RAR +L KAR + +W++S +E G +
Sbjct: 744 HSMSLWLLLSRLEEKVGQLTRARAILEKARLKNPQSPELWLESVRLEYRAGLKNIANTLM 803
Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574
+ L+ P+ LW LE R ++ +A + C P+ + L E K
Sbjct: 804 AKALQECPNSGILWSEAVFLEARPQRKTKSVDALKK-CEHDPHVLLAVAKLFWSERK--- 859
Query: 575 LNGLSKARA-VLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
++KAR L +++ L + W + E +HG +++ + P G LW
Sbjct: 860 ---ITKAREWFLRTVKIEPDLG-DAWGFFYKFELQHGTEEQQHEVKKRCENAEPRHGELW 915
Score = 171 (65.3 bits), Expect = 1.0e-124, Sum P(2) = 1.0e-124
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL+ V EW IPE+GD +R R+E PV
Sbjct: 131 REKEEIEKYRMERPKIQQQFSDLKRKLSEVTEDEWLSIPEVGDARNKRQRNPRYEKLTPV 190
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGG 87
PDS K Q ++ ++DP GG
Sbjct: 191 PDSFFAKHLQTGENHTSVDPLQGQFGG 217
Score = 116 (45.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
++ + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 291 ISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 350
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKL 669
E ++ P K+ A+ + ++ A+L
Sbjct: 351 EAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAEL 385
Score = 62 (26.9 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 34/118 (28%), Positives = 49/118 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRL-ARPD-EAKGVVAKGVRQIPKSVRLWLQAAEL--DHDKA 230
+ K CP + +W EA L ARP + K V A +++ + L A+L K
Sbjct: 803 MAKALQECPNSGILWSEAVFLEARPQRKTKSVDA--LKKCEHDPHVLLAVAKLFWSERKI 860
Query: 231 NKSR--VLRMALDEIPDSVRLW----KALVEISSEEEARILLHRAVECCPLDVELWLA 282
K+R LR E PD W K ++ +EE+ + R P ELW A
Sbjct: 861 TKAREWFLRTVKIE-PDLGDAWGFFYKFELQHGTEEQQHEVKKRCENAEPRHGELWCA 917
Score = 50 (22.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 635 ELIKMVPHHDRK-SKGKDA--LVKSDRD--PH---VFAAVAKLFWHDRKVDKARNWFNKA 686
+L M+P + S K A L+KS R+ PH + A A+L K+ ARN K
Sbjct: 279 DLNSMIPTYGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKG 338
Query: 687 VSLDPDTGDFW 697
+ P + D W
Sbjct: 339 TEMCPKSEDVW 349
>UNIPROTKB|O94906 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9606
"Homo sapiens" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=NAS]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=NAS;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0003713 "transcription
coactivator activity" evidence=IGI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006403 "RNA
localization" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0050681 "androgen receptor binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0071001 "U4/U6 snRNP"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=IC;IMP] Reactome:REACT_71 InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 SMART:SM00386
GO:GO:0005654 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0045944
GO:GO:0005682 GO:GO:0000244 GO:GO:0003723 Orphanet:791
EMBL:AL118506 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0071013 GO:GO:0000245 GO:GO:0046540
GO:GO:0006403 ChiTaRS:PRPF6 GO:GO:0071001 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW EMBL:AB019219 EMBL:AF221842
EMBL:AF026031 EMBL:AK001554 EMBL:AK314310 EMBL:AL356790
EMBL:AL355803 EMBL:BC001666 EMBL:AL137320 IPI:IPI00305068
PIR:T46386 RefSeq:NP_036601.2 UniGene:Hs.31334
ProteinModelPortal:O94906 SMR:O94906 DIP:DIP-29006N IntAct:O94906
MINT:MINT-260551 STRING:O94906 PhosphoSite:O94906 PaxDb:O94906
PeptideAtlas:O94906 PRIDE:O94906 Ensembl:ENST00000266079
Ensembl:ENST00000535781 GeneID:24148 KEGG:hsa:24148 UCSC:uc002yho.3
GeneCards:GC20P062612 HGNC:HGNC:15860 HPA:HPA047106 MIM:613979
MIM:613983 neXtProt:NX_O94906 PharmGKB:PA25682 InParanoid:O94906
PhylomeDB:O94906 GenomeRNAi:24148 NextBio:46847 Bgee:O94906
CleanEx:HS_PRPF6 Genevestigator:O94906 GermOnline:ENSG00000101161
Uniprot:O94906
Length = 941
Score = 1066 (380.3 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 234/530 (44%), Positives = 323/530 (60%)
Query: 183 PKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALD 241
P++ +++ A L AK V+ K + +P SVRLW A EL+ + + + R A++
Sbjct: 370 PQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSR-AVE 428
Query: 242 EIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG----VARSVLN 297
P SV LW AL + + E AR +L++A E P D +W+ A+LE + +++
Sbjct: 429 CCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIID 488
Query: 298 KARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD-TWMK 351
+A L R WI A+ + G+ + ++ R + + EE DR TWM+
Sbjct: 489 RAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVM-RAVIGIGIEEE--DRKHTWME 545
Query: 352 EAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411
DA+ C ++E ARAI+++A VF +KKS+WL+AA EK HG+RESL A
Sbjct: 546 ----------DADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEA 595
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471
LL++AV + P+AEVLWLMGAK KWLAGDVPAAR IL A+ PNSEEIWLAA KLE EN
Sbjct: 596 LLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEN 655
Query: 472 RELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531
E ERAR LLAKAR T RV+MKS +E N + EE L+ + F LW+M
Sbjct: 656 DEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMK 715
Query: 532 GQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591
GQ+EE+ +++A+EAY G +CP+ PLW L+ LEEK + L++ARA+L +RLK
Sbjct: 716 GQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEK---IGQLTRARAILEKSRLK 772
Query: 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKD 651
NP NP +WL ++R E + G K A++ +AKALQ+CPNSGILW+E I + R++K D
Sbjct: 773 NPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVD 832
Query: 652 ALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
AL K + DPHV AVAKLFW RK+ KAR WF++ V +D D GD WA +Y
Sbjct: 833 ALKKCEHDPHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFY 882
Score = 856 (306.4 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 202/562 (35%), Positives = 303/562 (53%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI KAR ++
Sbjct: 239 DMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLL 298
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I KG MCPK+EDVWLEA RL D A
Sbjct: 299 KSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTA 358
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K VVA+ VR +P+SVR++++AAEL+ D K RVLR AL+ +P+SVRLWKA VE+ E+
Sbjct: 359 KAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED 418
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARI+L RAVECCP VELWLALARLETY AR VLNKAR+ +P +R IWI AAKLEEANG
Sbjct: 419 ARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANG 478
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
NT MV KII+R I +L+ V I+R+ W++ DAEEC + GS+ T +A+
Sbjct: 479 NTQMVEKIIDRAITSLRANGVEINREQWIQ----------DAEECDRAGSVATCQAVMRA 528
Query: 382 ACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + +K W++ A H + E A+ A+ FP + +WL A + G
Sbjct: 529 VIGIGIEEEDRKHTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHG 588
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKS 497
+ +LQ A A P +E +WL K ++ ++ AR +LA A +E +W+ +
Sbjct: 589 TRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAA 648
Query: 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557
+E E R + + P+ +++ +LE +++ A++ + +
Sbjct: 649 VKLESENDEYERARRLLAKARSSAPTA-RVFMKSVKLEWVQDNIRAAQDLCEEALRHYED 707
Query: 558 CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADS 617
LW +EE++ + KAR + K P + +WL R E K G A +
Sbjct: 708 FPKLWMMKGQIEEQKEMME---KAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARA 764
Query: 618 FIAKALQKCPNSGILWAELIKM 639
+ K+ K P + LW E +++
Sbjct: 765 ILEKSRLKNPKNPGLWLESVRL 786
Score = 191 (72.3 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 97/493 (19%), Positives = 205/493 (41%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +W+ A +L + +V K + + S+R E++ ++ +
Sbjct: 453 LNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA--NGVEINREQWIQDA 510
Query: 235 VLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARS 294
+ + +A++ I EEE R H +E D + +A LE AR+
Sbjct: 511 EECDRAGSVATCQAVMRAVIGIGIEEEDR--KHTWME----DADSCVAHNALEC---ARA 561
Query: 295 VLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMK 351
+ A + P ++++W+ AA E+ +G + +++R + EV+ + W+
Sbjct: 562 IYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLA 621
Query: 352 E--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWLK 395
+A +A ++EE + E AR + + A + T + +++K
Sbjct: 622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTAR-VFMK 680
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455
+ +LE + + L +A+ ++ LW+M + + + AR+ + P
Sbjct: 681 SVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCP 740
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNNAEERGFI 514
+S +WL +LE + +L RAR +L K+R +W++S +E G +
Sbjct: 741 HSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLM 800
Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574
+ L+ P+ LW LE R ++ +A + C P+ + ++A L +
Sbjct: 801 AKALQECPNSGILWSEAIFLEARPQRRTKSVDALKK-CEHDPHVL---LAVAKLFWSQRK 856
Query: 575 LNGLSKARAVLS-VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
+ +KAR ++ + L + W + E +HG +++ + + P G LW
Sbjct: 857 I---TKAREWFHRTVKIDSDLG-DAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELW 912
Query: 634 AELIKMVPHHDRK 646
+ K + + +K
Sbjct: 913 CAVSKDIANWQKK 925
Score = 174 (66.3 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL V +EW IPE+GD +R R+E PV
Sbjct: 123 REKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPV 182
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGG 87
PDS K Q ++ ++DP GG
Sbjct: 183 PDSFFAKHLQTGENHTSVDPRQTQFGG 209
Score = 125 (49.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 31/123 (25%), Positives = 55/123 (44%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
+N + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 288 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 347
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG 694
E ++ P K+ A+ + ++ A+L + + + KA+ P++
Sbjct: 348 EAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAEL---ETDIRAKKRVLRKALEHVPNSV 404
Query: 695 DFW 697
W
Sbjct: 405 RLW 407
>FB|FBgn0036828 [details] [associations]
symbol:CG6841 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005684 "U2-type spliceosomal complex" evidence=ISS]
[GO:0005682 "U5 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IC] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
EMBL:AE014296 GO:GO:0022008 GO:GO:0005682 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 FlyBase:FBgn0036828 EMBL:BT021415
RefSeq:NP_649073.1 UniGene:Dm.11665 SMR:Q9VVU6 MINT:MINT-316737
STRING:Q9VVU6 EnsemblMetazoa:FBtr0075068 GeneID:40064
KEGG:dme:Dmel_CG6841 UCSC:CG6841-RA InParanoid:Q9VVU6
GenomeRNAi:40064 NextBio:816818 Uniprot:Q9VVU6
Length = 931
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 235/539 (43%), Positives = 315/539 (58%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKG-VVAKGVRQIPKSVRLWLQAAELDHDKANKS 233
I + P + +W++A L +AK V K + IP SVRLW A EL++ + +
Sbjct: 352 IAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAAVELENP--DDA 409
Query: 234 RVL-RMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYG-- 290
R+L A++ SV LW AL + + E AR +L++A E P D ++W A+LE
Sbjct: 410 RILLSRAVECCNTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEANGN 469
Query: 291 --VARSVLNKARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVV 343
+ +++++ L R W A E +G + I++ I EE
Sbjct: 470 IHMVEKIIDRSLTSLTVNGVEINRDQWFQEAIEAEKSGAVNCCQSIVKAVIGIGVEEE-- 527
Query: 344 IDR-DTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKT 402
DR TW+ DAE C K + E ARA+++HA +F +KKSIWL+AA EK
Sbjct: 528 -DRKQTWI----------DDAEFCAKENAFECARAVYAHALQIFPSKKSIWLRAAYFEKN 576
Query: 403 HGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL 462
HG+RESL ALL++AV + P++E+LWLMGAK KW+AGDVPAAR IL A+ PNSE+IWL
Sbjct: 577 HGTRESLEALLQRAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWL 636
Query: 463 AAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522
AA KLE EN E ERAR LLAKAR T RV MKSA +E L E +EE ++ FP
Sbjct: 637 AAVKLESENSEYERARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFP 696
Query: 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582
F LW+M GQ+EE+ +A Y G +CP IPLW ANLEE R G+ L+KAR
Sbjct: 697 DFPKLWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEE-RKGV--LTKAR 753
Query: 583 AVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPH 642
++L RL+NP +WL IR E + G K+ A + +A+ALQ+CPN+G LWAE I M
Sbjct: 754 SILERGRLRNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNAGELWAEAIFMETK 813
Query: 643 HDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
RK+K DAL K + DPHV AV+KLFW + K K R+WFN+ V +DPD GD WA +Y
Sbjct: 814 PQRKTKSVDALKKCEHDPHVLLAVSKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAYFY 872
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 196/559 (35%), Positives = 291/559 (52%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
DL +G+ R ++ +KL +SDSVTG TVVD GYLT + + T ++ DI KAR ++
Sbjct: 229 DLRKIGQARNTLMNVKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLL 288
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I +GC M ++ED+WLEA RL PD A
Sbjct: 289 KSVRETNPNHPPAWIASARLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTA 348
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
K V+A+ R IP SVR+W++AA+L+ + K RV R AL+ IP+SVRLWKA VE+ + ++
Sbjct: 349 KAVIAQAARHIPTSVRIWIKAADLESETKAKRRVFRKALEHIPNSVRLWKAAVELENPDD 408
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARILL RAVECC VELWLALARLETY AR VLNKAR+ +P +R IW AAKLEEANG
Sbjct: 409 ARILLSRAVECCNTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEANG 468
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
N MV KII+R + +L V I+RD W +EA AEK+G A C + SI +A+
Sbjct: 469 NIHMVEKIIDRSLTSLTVNGVEINRDQWFQEAIEAEKSG--AVNCCQ--SI--VKAVIGI 522
Query: 382 ACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVP 441
+K W+ A+ + E A+ A+ FP + +WL A + G
Sbjct: 523 GVEEE-DRKQTWIDDAEFCAKENAFECARAVYAHALQIFPSKKSIWLRAAYFEKNHGTRE 581
Query: 442 AARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWMKSAIV 500
+ +LQ A A P SE +WL K ++ ++ AR +L+ A +E +W+ + +
Sbjct: 582 SLEALLQRAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKL 641
Query: 501 ERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP 560
E E R + + P+ + + +LE L EA + P+
Sbjct: 642 ESENSEYERARRLLAKARGSAPTP-RVMMKSARLEWALEKFDEALRLLEEAVEVFPDFPK 700
Query: 561 LWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIA 620
LW +EE++ + A A ++ K P + +W+ + E + G +A S +
Sbjct: 701 LWMMKGQIEEQQRRTDD---AAATYTLGLKKCPTSIPLWILSANLEERKGVLTKARSILE 757
Query: 621 KALQKCPNSGILWAELIKM 639
+ + P +LW E I++
Sbjct: 758 RGRLRNPKVAVLWLEAIRV 776
Score = 185 (70.2 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 103/496 (20%), Positives = 194/496 (39%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVR-LWLQAAELDHDKANKS 233
+ K P + +W A +L +EA G + + I +S+ L + E++ D+ +
Sbjct: 443 LNKARENIPTDRQIWTTAAKL---EEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQE 499
Query: 234 RVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVAR 293
+ + + KA++ I EEE R ++ D E A+ + AR
Sbjct: 500 AIEAEKSGAVNCCQSIVKAVIGIGVEEEDR--KQTWID----DAEF---CAKENAFECAR 550
Query: 294 SVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI---DRDTWM 350
+V A + P +++IW+ AA E+ +G + +++R + E++ + WM
Sbjct: 551 AVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVAHCPKSEILWLMGAKSKWM 610
Query: 351 KE--------AEIAEKAGSDAEEC--------KKRGSIETARAIFSHACTVFLTKKSIWL 394
+A +A ++E+ + E AR + + A T + + +
Sbjct: 611 AGDVPAARGILSLAFQANPNSEDIWLAAVKLESENSEYERARRLLAKARGSAPTPR-VMM 669
Query: 395 KAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAK--EKWLAGDVPAARDILQEAYA 452
K+A+LE + + LL +AV FP LW+M + E+ D AA L
Sbjct: 670 KSARLEWALEKFDEALRLLEEAVEVFPDFPKLWMMKGQIEEQQRRTDDAAATYTL--GLK 727
Query: 453 TIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERV-WMKSAIVERELGNNAEER 511
P S +W+ + LE L +AR +L + R V W+++ VE G
Sbjct: 728 KCPTSIPLWILSANLEERKGVLTKARSILERGRLRNPKVAVLWLEAIRVELRAGLKEIAS 787
Query: 512 GFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571
+ L+ P+ LW +E + ++ +A + C P+ + L E K
Sbjct: 788 TMMARALQECPNAGELWAEAIFMETKPQRKTKSVDALKK-CEHDPHVLLAVSKLFWSEHK 846
Query: 572 RNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631
SK R + +P + W + E HG + + + + + P G
Sbjct: 847 ------FSKCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRCISAEPTHGE 900
Query: 632 LWAELIKMVPHHDRKS 647
W + K + + K+
Sbjct: 901 SWCRVSKNIQNWQFKT 916
>ASPGD|ASPL0000068414 [details] [associations]
symbol:AN7447 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 SMART:SM00386 GO:GO:0005634 eggNOG:COG0457
Gene3D:1.25.40.10 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000398
HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_680716.1
ProteinModelPortal:Q5AW83 STRING:Q5AW83
EnsemblFungi:CADANIAT00000537 GeneID:2869476 KEGG:ani:AN7447.2
Uniprot:Q5AW83
Length = 941
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 212/533 (39%), Positives = 313/533 (58%)
Query: 184 KNED----VWLEACRL-ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRM 238
KN D +W+EA RL P K V+ + + IP+SV +W +A L+ D A+ +L
Sbjct: 367 KNNDHSTRLWIEAMRLETEPRAKKNVLRQAILHIPQSVTIWKEAVNLEEDPADARLLLAK 426
Query: 239 ALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARL-ETYGVAR--SV 295
A++ IP SV LW AL + + E A+ +L+ A + P E+W+A +RL E G +V
Sbjct: 427 AVELIPLSVELWLALARLETPENAQKVLNAARKAVPTSHEIWIAASRLQEQMGTFNKVNV 486
Query: 296 LNKARKKLPKERAI-----WIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDR-DTW 349
+ +A + L +E A+ WIA A+ E G G II + G + DR D W
Sbjct: 487 MKRAVQSLARENAMLKREEWIAEAEKCEEEGAVLTCGAIIRETLG--WGLDEDDDRKDIW 544
Query: 350 MKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESL 409
M DA+ RG ETARAI+++A VF+ ++SIW+ AA LE+ HG++E+L
Sbjct: 545 M----------DDAKASISRGKYETARAIYAYALRVFVNRRSIWVAAADLERNHGTKEAL 594
Query: 410 IALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEF 469
+L KAV PQ+E LWL AKEKW +G++ AR +L A+ PN+E+IWLAA KLE
Sbjct: 595 WQVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEA 654
Query: 470 ENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWL 529
+ ++ ++AR LLA AR GT+RVW+KS ER+LGN + + +GL+ +P LW+
Sbjct: 655 DAQQTDQARELLATARREAGTDRVWIKSVAFERQLGNVDDALDLVNQGLQLYPKADKLWM 714
Query: 530 MLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVAR 589
M GQ+ E L +A+EAY +G CP + LW + LEEK + +AR+VL AR
Sbjct: 715 MKGQIYESQNKLPQAREAYGTGTRACPKSVALWLLASRLEEKAGAV---VRARSVLDRAR 771
Query: 590 LKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELI-KMVPHHDRKSK 648
L P +PE+W ++R E + N +A +A+ALQ+ P+SG+LW+E I + P RK++
Sbjct: 772 LAVPNSPELWTESVRVERRANNIPQAKVLMARALQEVPSSGLLWSESIWHLEPRSQRKAR 831
Query: 649 GKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
+A+ K D DP +F VA++FW +R+++KA WF KA+ + D GD WA YY
Sbjct: 832 SLEAIKKVDNDPILFITVARIFWGERRLEKAMTWFEKAIISNSDFGDAWAWYY 884
Score = 633 (227.9 bits), Expect = 1.5e-61, P = 1.5e-61
Identities = 181/641 (28%), Positives = 296/641 (46%)
Query: 77 ALDPSSRAAGGAESVVTDLTAVGEG--RGKILTLKLDGISDSVTG-LTVVDLSGYLTRMN 133
A D + A G + +++A + + K+ + D+ +G T +D GYLT +
Sbjct: 218 ATDAGANGADGMITNFANISAARDKVLQVKLDQAAMGSSGDAASGSATSIDPKGYLTSLT 277
Query: 134 DLKITTNS-ELRDILKARKIVRA------------IQXXXXXXXXXXXXXXXXXITKGCN 180
++ E+ D+ + R ++ + I I KGC
Sbjct: 278 QSELKAGEIEVGDVKRVRVLLESVTRTNPKHAPGWIALARLEELAGRIVTARNVIAKGCE 337
Query: 181 MCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMAL 240
+CPK+ED WLE RL AK + A ++ S RLW++A L+ + K VLR A+
Sbjct: 338 LCPKSEDAWLENIRLNEGHNAKVIAANAIKNNDHSTRLWIEAMRLETEPRAKKNVLRQAI 397
Query: 241 DEIPDSVRLWKALVEISSEE-EARILLHRAVECCPLDVELWLALARLETYGVARSVLNKA 299
IP SV +WK V + + +AR+LL +AVE PL VELWLALARLET A+ VLN A
Sbjct: 398 LHIPQSVTIWKEAVNLEEDPADARLLLAKAVELIPLSVELWLALARLETPENAQKVLNAA 457
Query: 300 RKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKA 359
RK +P IWIAA++L+E G + V +++R +++L E ++ R+ W IAE
Sbjct: 458 RKAVPTSHEIWIAASRLQEQMGTFNKVN-VMKRAVQSLARENAMLKREEW-----IAE-- 509
Query: 360 GSDAEECKKRGSIETARAIFSHACTVFLT----KKSIWLKAAQLEKTHGSRESLIALLRK 415
AE+C++ G++ T AI L +K IW+ A+ + G E+ A+
Sbjct: 510 ---AEKCEEEGAVLTCGAIIRETLGWGLDEDDDRKDIWMDDAKASISRGKYETARAIYAY 566
Query: 416 AVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELE 475
A+ F +W+ A + G A +L++A P SEE+WL K ++++ E++
Sbjct: 567 ALRVFVNRRSIWVAAADLERNHGTKEALWQVLEKAVEACPQSEELWLQLAKEKWQSGEID 626
Query: 476 RARMLLAKARDMG-GTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQL 534
AR +L +A + E +W+ + +E + + R + +R +W+
Sbjct: 627 DARRVLGRAFNQNPNNEDIWLAAVKLEADAQQTDQARELLATA-RREAGTDRVWIKSVAF 685
Query: 535 EERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594
E +LG++ +A + G P LW + E +N L +AR P
Sbjct: 686 ERQLGNVDDALDLVNQGLQLYPKADKLWMMKGQIYESQNKL---PQAREAYGTGTRACPK 742
Query: 595 NPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALV 654
+ +WL R E K G A S + +A PNS LW E +++ + + K +
Sbjct: 743 SVALWLLASRLEEKAGAVVRARSVLDRARLAVPNSPELWTESVRVERRANNIPQAKVLMA 802
Query: 655 KSDRD-PHVFAAVAKLFWH--DRKVDKARNWFN-KAVSLDP 691
++ ++ P ++ WH R KAR+ K V DP
Sbjct: 803 RALQEVPSSGLLWSESIWHLEPRSQRKARSLEAIKKVDNDP 843
Score = 426 (155.0 bits), Expect = 6.1e-37, P = 6.1e-37
Identities = 171/729 (23%), Positives = 307/729 (42%)
Query: 1 ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRF-----E 55
AR +E + Y KNP I+++FVDLK L +V EW +PE+GD + N+R + +
Sbjct: 130 ARERQEREEYERKNPKIQQQFVDLKRSLASVSEDEWANLPEVGDLTGRNRRTKQNLRMQQ 189
Query: 56 SFVPVPDSLLQKARQEQQH--VIALDPSSRAAG--GAESVVTDLTAVGEGRGKILTLKLD 111
F VPDS+L AR Q +A D ++ AG GA+ ++T+ + R K+L +KLD
Sbjct: 190 RFYAVPDSVLASARDSSQFDTTVADDGTATDAGANGADGMITNFANISAARDKVLQVKLD 249
Query: 112 ----GIS-DSVTG-LTVVDLSGYLTRMNDLKITTNS-ELRDILKARKIVRAIQXXXXXXX 164
G S D+ +G T +D GYLT + ++ E+ D+ + R ++ ++
Sbjct: 250 QAAMGSSGDAASGSATSIDPKGYLTSLTQSELKAGEIEVGDVKRVRVLLESV-------- 301
Query: 165 XXXXXXXXXXITKGCNMCPKNEDVWLEACRL----ARPDEAKGVVAKGVRQIPKSVRLWL 220
T+ N PK+ W+ RL R A+ V+AKG PKS WL
Sbjct: 302 -----------TR-TN--PKHAPGWIALARLEELAGRIVTARNVIAKGCELCPKSEDAWL 347
Query: 221 QAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARI-LLHRAVECCPLDVEL 279
+ L+ N + A+ S RLW + + +E A+ +L +A+ P V +
Sbjct: 348 ENIRLNEGH-NAKVIAANAIKNNDHSTRLWIEAMRLETEPRAKKNVLRQAILHIPQSVTI 406
Query: 280 WLALARLETYGV-ARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQ 338
W LE AR +L KA + +P +W+A A+LE N K++ +A
Sbjct: 407 WKEAVNLEEDPADARLLLAKAVELIPLSVELWLALARLETPE-NAQ---KVLNAARKA-- 460
Query: 339 GEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQ 398
V + W+ + + E+ G+ K ++ RA+ S A + K+ W+ A+
Sbjct: 461 ---VPTSHEIWIAASRLQEQMGT----FNKVNVMK--RAVQSLARENAMLKREEWIAEAE 511
Query: 399 LEKTHGSRESLIALLRKAVTYF----PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI 454
+ G+ + A++R+ + + + +W+ AK G AR I A
Sbjct: 512 KCEEEGAVLTCGAIIRETLGWGLDEDDDRKDIWMDDAKASISRGKYETARAIYAYALRVF 571
Query: 455 PNSEEIWLAAFKLEFENRELERARMLLAKARDM-GGTERVWMKSAIVERELGNNAEERGF 513
N IW+AA LE + E +L KA + +E +W++ A + + G + R
Sbjct: 572 VNRRSIWVAAADLERNHGTKEALWQVLEKAVEACPQSEELWLQLAKEKWQSGEIDDARRV 631
Query: 514 IEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRN 573
+ + P+ ++WL +LE +A+E + + +W E +
Sbjct: 632 LGRAFNQNPNNEDIWLAAVKLEADAQQTDQARELLATARREA-GTDRVWIKSVAFERQ-- 688
Query: 574 GLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
L + A +++ P ++W+ + +A + CP S LW
Sbjct: 689 -LGNVDDALDLVNQGLQLYPKADKLWMMKGQIYESQNKLPQAREAYGTGTRACPKSVALW 747
Query: 634 AELIKMVPHHDRKSKGKDALVKS----DRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689
++ + + L ++ P ++ ++ + +A+ +A+
Sbjct: 748 LLASRLEEKAGAVVRARSVLDRARLAVPNSPELWTESVRVERRANNIPQAKVLMARALQE 807
Query: 690 DPDTGDFWA 698
P +G W+
Sbjct: 808 VPSSGLLWS 816
Score = 237 (88.5 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 108/496 (21%), Positives = 213/496 (42%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKA--NK 232
+ K + P + ++WL RL P+ A+ V+ + +P S +W+ A+ L NK
Sbjct: 424 LAKAVELIPLSVELWLALARLETPENAQKVLNAARKAVPTSHEIWIAASRLQEQMGTFNK 483
Query: 233 SRVLRMALDEIP-DSVRL----WKALVEISSEEEARILLHRAVECCPLDVELWLALARLE 287
V++ A+ + ++ L W A E EEE +L A+ L L R +
Sbjct: 484 VNVMKRAVQSLARENAMLKREEWIAEAE-KCEEEGAVLTCGAIIRETLGWGLDEDDDRKD 542
Query: 288 TYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD 347
+ + + + +R K RAI+ A ++ + + +ER + V+++
Sbjct: 543 IW-MDDAKASISRGKYETARAIYAYALRVFVNRRSIWVAAADLERNHGTKEALWQVLEKA 601
Query: 348 TWMKEAEIAEKAGSD-AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLE----KT 402
++ +E+ A+E + G I+ AR + A + IWL A +LE +T
Sbjct: 602 --VEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEADAQQT 659
Query: 403 HGSRESLIALLRKAVTYFPQAEVLWLMG-AKEKWLAGDVPAARDILQEAYATIPNSEEIW 461
+RE L R+A T + +W+ A E+ L G+V A D++ + P ++++W
Sbjct: 660 DQARELLATARREAGT-----DRVWIKSVAFERQL-GNVDDALDLVNQGLQLYPKADKLW 713
Query: 462 LAAFKLEFENRELERARMLLAKA-RDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKR 520
+ ++ +L +AR R + +W+ ++ +E + G R ++
Sbjct: 714 MMKGQIYESQNKLPQAREAYGTGTRACPKSVALWLLASRLEEKAGAVVRARSVLDRARLA 773
Query: 521 FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWY-SLANLEEKRNGLNGLS 579
P+ LW ++E R ++ +AK + P+ LW S+ +LE +
Sbjct: 774 VPNSPELWTESVRVERRANNIPQAKVLMARALQEVPSSGLLWSESIWHLEPRSQ-----R 828
Query: 580 KARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKM 639
KAR++ ++ ++ N +P +++ R ++A ++ KA+ + G WA K
Sbjct: 829 KARSLEAIKKVDN--DPILFITVARIFWGERRLEKAMTWFEKAIISNSDFGDAWAWYYKF 886
Query: 640 VPHHDRKSKGKDALVK 655
+ H K D + K
Sbjct: 887 LLQHGTDEKRADVISK 902
Score = 232 (86.7 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 91/372 (24%), Positives = 162/372 (43%)
Query: 289 YGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRAL-QGEEVVID-- 345
Y AR++ A + R+IW+AAA LE +G + +++E+ + A Q EE+ +
Sbjct: 557 YETARAIYAYALRVFVNRRSIWVAAADLERNHGTKEALWQVLEKAVEACPQSEELWLQLA 616
Query: 346 RDTWMK-EAEIAEKA-GSDAEECKKRGSI--------------ETARAIFSHACTVFLTK 389
++ W E + A + G + I + AR + + A T
Sbjct: 617 KEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEADAQQTDQARELLATARREAGTD 676
Query: 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQE 449
+ +W+K+ E+ G+ + + L+ + + +P+A+ LW+M + +P AR+
Sbjct: 677 R-VWIKSVAFERQLGNVDDALDLVNQGLQLYPKADKLWMMKGQIYESQNKLPQAREAYGT 735
Query: 450 AYATIPNSEEIWLAAFKLEFENRELERARMLLAKAR-DMGGTERVWMKSAIVERELGNNA 508
P S +WL A +LE + + RAR +L +AR + + +W +S VER N
Sbjct: 736 GTRACPKSVALWLLASRLEEKAGAVVRARSVLDRARLAVPNSPELWTESVRVERRANNIP 795
Query: 509 EERGFIEEGLKRFPSFFNLWL-MLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567
+ + + L+ PS LW + LE R + EA + N P L+ ++A
Sbjct: 796 QAKVLMARALQEVPSSGLLWSESIWHLEPRSQRKARSLEAIKKVDND-PI---LFITVAR 851
Query: 568 LEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHG-NKKEADSFIAKALQKC 626
+ G L KA A + N + W + +HG ++K AD I+K +
Sbjct: 852 IFW---GERRLEKAMTWFEKAIISNSDFGDAWAWYYKFLLQHGTDEKRAD-VISKCVLSE 907
Query: 627 PNSGILWAELIK 638
P G +W + K
Sbjct: 908 PKHGEVWQSIAK 919
>WB|WBGene00013343 [details] [associations]
symbol:prp-6 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040039 "inductive cell migration" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0018996 "molting cycle, collagen and cuticulin-based cuticle"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0018996
GO:GO:0000003 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0040039
GO:GO:0040015 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
EMBL:AL132898 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 RefSeq:NP_507525.1
ProteinModelPortal:Q9GRZ2 SMR:Q9GRZ2 STRING:Q9GRZ2 PaxDb:Q9GRZ2
EnsemblMetazoa:Y59A8B.6.1 EnsemblMetazoa:Y59A8B.6.2 GeneID:180180
KEGG:cel:CELE_Y59A8B.6 UCSC:Y59A8B.6.1 CTD:180180 WormBase:Y59A8B.6
InParanoid:Q9GRZ2 NextBio:908332 Uniprot:Q9GRZ2
Length = 968
Score = 803 (287.7 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 199/535 (37%), Positives = 288/535 (53%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARP-DEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKS 233
+ CP + +W +A L + + K V+ K + QIP SV+LW A EL+ D +
Sbjct: 388 VANAVRSCPHSVRLWCKASDLEQDLKDKKKVLRKALEQIPSSVKLWKAAVELE-DPEDAR 446
Query: 234 RVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLE-TYG-- 290
+L A++ S +W AL + + E AR +L++A E P D +WL+ ARLE T G
Sbjct: 447 ILLTRAVECCSSSTEMWLALARLETYENARKVLNKAREHIPTDRHIWLSAARLEETRGQK 506
Query: 291 -VARSVLNKARKKLPKE-----RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI 344
+ ++ KA L R W+ A ++ + + I R + L G E
Sbjct: 507 DMVDKIVAKAMSSLKVNQVEINRDQWLKDA-VDAEMAKCPITCQAIIRNVIGL-GVEDED 564
Query: 345 DRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHG 404
R TW+ +AE EK +A C R +++ A F K+SIW A E+ HG
Sbjct: 565 KRTTWLADAENFEK--EEAFTC--------VRTVYAIALKEFSRKRSIWDAAIHFEREHG 614
Query: 405 SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN-SEEIWLA 463
S + A+L KA P+ E WLM AK +++ V ARD L A+ + SE+IWLA
Sbjct: 615 SLDEHEAILLKACETVPEVEDYWLMLAKLRFVNKRVGEARDTLMSAFEKHGHQSEKIWLA 674
Query: 464 AFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPS 523
A K+E E + + AR L KAR + RVWMK+A E LGN E + EE ++++
Sbjct: 675 ATKIEIETDQFDTARGLFGKARAKAPSARVWMKNAHFEWCLGNVEEAKRLCEECIQKYDD 734
Query: 524 FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARA 583
F ++L+LGQ+ E++ + A+ AY G +CP IPLW L LEEK + KAR
Sbjct: 735 FHKIYLVLGQVLEQMNDVHGARLAYTQGIRKCPGVIPLWILLVRLEEKAGQI---VKARV 791
Query: 584 VLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHH 643
L ARL+NP N ++WL ++R E + G + A +++ALQ+C SG LWAE I M H
Sbjct: 792 DLEKARLRNPKNDDLWLESVRFEQRVGCPEMAKERMSRALQECEGSGKLWAEAIWMEGPH 851
Query: 644 DRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWA 698
R++K DAL K + +PHV A A+LFW +RK+ KAR WF +AV+LDPD GD +A
Sbjct: 852 GRRAKSIDALKKCEHNPHVLIAAARLFWSERKIKKAREWFVRAVNLDPDNGDAFA 906
Score = 751 (269.4 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 187/562 (33%), Positives = 291/562 (51%)
Query: 94 DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIV 153
DL +G+ R KI+ ++L +SDSVTG TVVD GYLT M + +L+DI KAR ++
Sbjct: 265 DLVKIGQARNKIMDMQLTQVSDSVTGQTVVDPKGYLTDMQSIIPQMGGDLQDIKKARMLL 324
Query: 154 RAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEA 201
++++ I +GC +E++WL A RL P+
Sbjct: 325 KSVRETNPRHPPAWVASAVLEEQAGKLQTARNFIMEGCEKIKNSEELWLHAIRLHPPELG 384
Query: 202 KGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEEE 261
+ +VA VR P SVRLW +A++L+ D +K +VLR AL++IP SV+LWKA VE+ E+
Sbjct: 385 RSIVANAVRSCPHSVRLWCKASDLEQDLKDKKKVLRKALEQIPSSVKLWKAAVELEDPED 444
Query: 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANG 321
ARILL RAVECC E+WLALARLETY AR VLNKAR+ +P +R IW++AA+LEE G
Sbjct: 445 ARILLTRAVECCSSSTEMWLALARLETYENARKVLNKAREHIPTDRHIWLSAARLEETRG 504
Query: 322 NTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH 381
MV KI+ + + +L+ +V I+RD W+K+A AE A +C T +AI +
Sbjct: 505 QKDMVDKIVAKAMSSLKVNQVEINRDQWLKDAVDAEMA-----KCPI-----TCQAIIRN 554
Query: 382 ACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438
+ + K++ WL A+ + + + + A+ F + +W + G
Sbjct: 555 VIGLGVEDEDKRTTWLADAENFEKEEAFTCVRTVYAIALKEFSRKRSIWDAAIHFEREHG 614
Query: 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG--TERVWMK 496
+ IL +A T+P E+ WL KL F N+ + AR L A + G +E++W+
Sbjct: 615 SLDEHEAILLKACETVPEVEDYWLMLAKLRFVNKRVGEARDTLMSAFEKHGHQSEKIWLA 674
Query: 497 SAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556
+ +E E RG + + PS +W+ E LG+++EAK + +
Sbjct: 675 ATKIEIETDQFDTARGLFGKARAKAPSA-RVWMKNAHFEWCLGNVEEAKRLCEECIQKYD 733
Query: 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEAD 616
+ ++ L + E+ N ++G AR + K P +W+ +R E K G +A
Sbjct: 734 DFHKIYLVLGQVLEQMNDVHG---ARLAYTQGIRKCPGVIPLWILLVRLEEKAGQIVKAR 790
Query: 617 SFIAKALQKCPNSGILWAELIK 638
+ KA + P + LW E ++
Sbjct: 791 VDLEKARLRNPKNDDLWLESVR 812
Score = 204 (76.9 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 74/340 (21%), Positives = 149/340 (43%)
Query: 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLE---KTHG-SRESLIALLRKAVTYFPQ 422
++ GS++ AI AC + WL A+L K G +R++L++ K + Q
Sbjct: 611 REHGSLDEHEAILLKACETVPEVEDYWLMLAKLRFVNKRVGEARDTLMSAFEK---HGHQ 667
Query: 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLA 482
+E +WL K + AR + +A A P S +W+ E+ +E A+ L
Sbjct: 668 SEKIWLAATKIEIETDQFDTARGLFGKARAKAP-SARVWMKNAHFEWCLGNVEEAKRLCE 726
Query: 483 KA-RDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHL 541
+ + ++++ V ++ + R +G+++ P LW++L +LEE+ G +
Sbjct: 727 ECIQKYDDFHKIYLVLGQVLEQMNDVHGARLAYTQGIRKCPGVIPLWILLVRLEEKAGQI 786
Query: 542 KEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLA 601
+A+ + + P LW E+ R G ++K R ++ + + ++W
Sbjct: 787 VKARVDLEKARLRNPKNDDLWLESVRFEQ-RVGCPEMAKERMSRALQECEG--SGKLWAE 843
Query: 602 TIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKS-DRDP 660
I E HG + ++ AL+KC ++ + ++ + K ++ V++ + DP
Sbjct: 844 AIWMEGPHGRRAKS----IDALKKCEHNPHVLIAAARLFWSERKIKKAREWFVRAVNLDP 899
Query: 661 HVFAAVAKLFWHDR---KVDKARNWFNKAVSLDPDTGDFW 697
A A ++ K + ++ F K V+ +P GD W
Sbjct: 900 DNGDAFANFLAFEQIHGKEEDRKSVFKKCVTSEPRYGDLW 939
Score = 192 (72.6 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 66/284 (23%), Positives = 126/284 (44%)
Query: 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQE 449
+ IWL A ++E ++ L KA P A V W+ A +W G+V A+ + +E
Sbjct: 669 EKIWLAATKIEIETDQFDTARGLFGKARAKAPSARV-WMKNAHFEWCLGNVEEAKRLCEE 727
Query: 450 AYATIPNSEEIWLAAFKLEFENRELERARMLLAKA-RDMGGTERVWMKSAIVERELGNNA 508
+ +I+L ++ + ++ AR+ + R G +W+ +E + G
Sbjct: 728 CIQKYDDFHKIYLVLGQVLEQMNDVHGARLAYTQGIRKCPGVIPLWILLVRLEEKAGQIV 787
Query: 509 EERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANL 568
+ R +E+ R P +LWL + E+R+G + AKE +C LW +
Sbjct: 788 KARVDLEKARLRNPKNDDLWLESVRFEQRVGCPEMAKERMSRALQECEGSGKLWAEAIWM 847
Query: 569 EEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628
E G +G +A+++ ++ + ++ NP + +A R K+A + +A+ P+
Sbjct: 848 E----GPHG-RRAKSIDALKKCEH--NPHVLIAAARLFWSERKIKKAREWFVRAVNLDPD 900
Query: 629 SGILWAELIKMVPHH----DRKSKGKDALVKSDRDPHVFAAVAK 668
+G +A + H DRKS K + R ++ +V+K
Sbjct: 901 NGDAFANFLAFEQIHGKEEDRKSVFKKCVTSEPRYGDLWQSVSK 944
Score = 171 (65.3 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 108/488 (22%), Positives = 192/488 (39%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSR 234
+ K P + +WL A RL K +V K V + S+++ E++ D+ K
Sbjct: 479 LNKAREHIPTDRHIWLSAARLEETRGQKDMVDKIVAKAMSSLKV--NQVEINRDQWLKDA 536
Query: 235 V-LRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVAR 293
V MA I + + ++ + E+E + A D E + + E + R
Sbjct: 537 VDAEMAKCPITCQAII-RNVIGLGVEDEDKRTTWLA------DAENF---EKEEAFTCVR 586
Query: 294 SVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEE------------ 341
+V A K+ ++R+IW AA E +G+ I+ + + E
Sbjct: 587 TVYAIALKEFSRKRSIWDAAIHFEREHGSLDEHEAILLKACETVPEVEDYWLMLAKLRFV 646
Query: 342 ---VVIDRDTWM----KEAEIAEKAGSDAEECK-KRGSIETARAIFSHACTVFLTKKSIW 393
V RDT M K +EK A + + + +TAR +F A + + +W
Sbjct: 647 NKRVGEARDTLMSAFEKHGHQSEKIWLAATKIEIETDQFDTARGLFGKARAKAPSAR-VW 705
Query: 394 LKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT 453
+K A E G+ E L + + + ++L+ + DV AR +
Sbjct: 706 MKNAHFEWCLGNVEEAKRLCEECIQKYDDFHKIYLVLGQVLEQMNDVHGARLAYTQGIRK 765
Query: 454 IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG-TERVWMKSAIVERELG--NNAEE 510
P +W+ +LE + ++ +AR+ L KAR + +W++S E+ +G A+E
Sbjct: 766 CPGVIPLWILLVRLEEKAGQIVKARVDLEKARLRNPKNDDLWLESVRFEQRVGCPEMAKE 825
Query: 511 RGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570
R + L+ LW +E G ++ +A + C P+ + L E
Sbjct: 826 R--MSRALQECEGSGKLWAEAIWMEGPHGRRAKSIDALKK-CEHNPHVLIAAARLFWSER 882
Query: 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630
K + KAR A +P N + + + E HG +++ S K + P G
Sbjct: 883 K------IKKAREWFVRAVNLDPDNGDAFANFLAFEQIHGKEEDRKSVFKKCVTSEPRYG 936
Query: 631 ILWAELIK 638
LW + K
Sbjct: 937 DLWQSVSK 944
Score = 129 (50.5 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
+ +E ++ + P I++ F DLK +L V EW+ IPE+GD KR R E F PV
Sbjct: 136 KYKELVELFHKDRPKIQQGFQDLKRQLAEVTEDEWQAIPEVGDMRNKAKRNARAEKFTPV 195
Query: 61 PDSLL 65
PDS++
Sbjct: 196 PDSII 200
Score = 111 (44.1 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 32/124 (25%), Positives = 53/124 (42%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
L + KAR +L R NP +P W+A+ E + G + A +FI + +K NS LW
Sbjct: 314 LQDIKKARMLLKSVRETNPRHPPAWVASAVLEEQAGKLQTARNFIMEGCEKIKNSEELWL 373
Query: 635 ELIKMVPHHDRKSKGKDALVKSDRD-PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693
I++ P G+ + + R PH K ++ + + KA+ P +
Sbjct: 374 HAIRLHP----PELGRSIVANAVRSCPHSVRLWCKASDLEQDLKDKKKVLRKALEQIPSS 429
Query: 694 GDFW 697
W
Sbjct: 430 VKLW 433
Score = 90 (36.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 38/158 (24%), Positives = 64/158 (40%)
Query: 292 ARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK 351
AR L KAR + PK +W+ + + E+ G M + + R ++ +G + WM
Sbjct: 789 ARVDLEKARLRNPKNDDLWLESVRFEQRVGCPEMAKERMSRALQECEGSGKLWAEAIWM- 847
Query: 352 EAEIAEKAGS-DA-EECK--------------KRGSIETARAIFSHACTVFLTKKSIWLK 395
E +A S DA ++C+ I+ AR F A + +
Sbjct: 848 EGPHGRRAKSIDALKKCEHNPHVLIAAARLFWSERKIKKAREWFVRAVNLDPDNGDAFAN 907
Query: 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKE 433
E+ HG E ++ +K VT P+ LW +K+
Sbjct: 908 FLAFEQIHGKEEDRKSVFKKCVTSEPRYGDLWQSVSKD 945
>POMBASE|SPBC6B1.07 [details] [associations]
symbol:prp1 "U4/U6 x U5 tri-snRNP complex subunit Prp1"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 PomBase:SPBC6B1.07
EMBL:CU329671 GenomeReviews:CU329671_GR eggNOG:COG0457
Gene3D:1.25.40.10 GO:GO:0046540 GO:GO:0045292 EMBL:D83659
EMBL:D83743 PIR:T45158 RefSeq:NP_596086.1 ProteinModelPortal:Q12381
IntAct:Q12381 STRING:Q12381 EnsemblFungi:SPBC6B1.07.1
GeneID:2541185 KEGG:spo:SPBC6B1.07 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY OrthoDB:EOG4D82F8 NextBio:20802297 InterPro:IPR027108
PANTHER:PTHR11246:SF1 Uniprot:Q12381
Length = 906
Score = 884 (316.2 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 201/538 (37%), Positives = 304/538 (56%)
Query: 175 ITKGCNMCPKNEDVWLEACRLA-RPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKS 233
I PK+ +WLEA +L + K ++ K + P SV LW +A L+ + N
Sbjct: 331 IANAVKKLPKSVTLWLEAEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVNLEEEVDNAR 390
Query: 234 RVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETY--GV 291
+L A++ IP S+ LW AL + + E A+ +L++A + E+W+A ARLE V
Sbjct: 391 ILLARAVELIPMSIDLWLALARLETYENAKKVLNKARQTIRTSHEVWIAAARLEEQQGNV 450
Query: 292 AR--SVLNKARKKLPK-----ERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI 344
+R ++ + +L +R W++ A+ E G II + EE
Sbjct: 451 SRVEKIMARGVSELQATGGMLQRDQWLSEAEKCETEGAVITAQAIINTCLGVGLDEE--- 507
Query: 345 DR-DTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTH 403
D+ DTW+ +A+ A +C I+ ARA+F+ + V+ + +WL+A +LEK +
Sbjct: 508 DQFDTWLDDAQ-----SFIARKC-----IDCARAVFAFSLRVYPKSEKLWLRAVELEKLY 557
Query: 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463
G+ ES+ ++L KAV P+AE+LWL+ AKE+ D+ AR+IL A+ NSEEIWLA
Sbjct: 558 GTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLA 617
Query: 464 AFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPS 523
A ++EF N E ERAR LLA+AR GTER+W KS +ER L +E LK +P
Sbjct: 618 AVRIEFVNNENERARKLLARARIESGTERIWTKSISLERILDEKDRALQLLENALKIYPH 677
Query: 524 FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARA 583
+ L++M GQ+ E ++ A++AY +G CP IPLW LA LEEK++ + +AR
Sbjct: 678 YDKLYMMKGQIFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKLEEKQSVI----RARV 733
Query: 584 VLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHH 643
V A++KNP N +WL I+ E + GN + + +AKALQ+CP+SG+LW E I + P
Sbjct: 734 VFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSGLLWTEAIWLEPRA 793
Query: 644 DRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
RK++ DAL K + + H+ +A++ W ++K DKAR+WF KAV D D GD W +Y
Sbjct: 794 QRKTRATDALRKCEGNAHLLCTIARMLWLEKKADKARSWFLKAVKADQDNGDVWCWFY 851
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 200/631 (31%), Positives = 309/631 (48%)
Query: 47 RSNKRKRFESFVPVPDSLLQKARQEQQHV--IALDPSSRA-AGGAESVVTDLTAVGEGRG 103
+ K+ R E F D +L AR E Q + A+D + T+ +G R
Sbjct: 158 KRTKQPRRERFYATSDFVLASARNENQAISNFAVDTQAGTETPDMNGTKTNFVEIGAARD 217
Query: 104 KILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAI------- 156
K+L +KL S ++T + +D GYLT +N + ++L DI KARK+++++
Sbjct: 218 KVLGIKLAQASSNLTSPSTIDPKGYLTSLNSMVPKNANDLGDIRKARKLLQSVIETNPKH 277
Query: 157 -----QXXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQ 211
I KGC C ++EDVWLEA RL EAK ++A V++
Sbjct: 278 ASGWVAAARLEEVANKLSQAQSLILKGCENCSRSEDVWLEAIRLHPAAEAKVIIANAVKK 337
Query: 212 IPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSE-EEARILLHRAV 270
+PKSV LWL+A +L++ +K R+++ AL+ P SV LWK V + E + ARILL RAV
Sbjct: 338 LPKSVTLWLEAEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVNLEEEVDNARILLARAV 397
Query: 271 ECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKII 330
E P+ ++LWLALARLETY A+ VLNKAR+ + +WIAAA+LEE GN S V KI+
Sbjct: 398 ELIPMSIDLWLALARLETYENAKKVLNKARQTIRTSHEVWIAAARLEEQQGNVSRVEKIM 457
Query: 331 ERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKK 390
RG+ LQ ++ RD W+ S+AE+C+ G++ TA+AI + V L ++
Sbjct: 458 ARGVSELQATGGMLQRDQWL----------SEAEKCETEGAVITAQAIINTCLGVGLDEE 507
Query: 391 S---IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDIL 447
WL AQ + A+ ++ +P++E LWL + + L G + IL
Sbjct: 508 DQFDTWLDDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSIL 567
Query: 448 QEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG-TERVWMKSAIVERELGN 506
++A + P +E +WL K ++ AR +L +A + +E +W+ A V E N
Sbjct: 568 EKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWL--AAVRIEFVN 625
Query: 507 NAEERGFIEEGLKRFPSFFN-LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSL 565
N ER R S +W LE L A + ++ P+ L+
Sbjct: 626 NENERARKLLARARIESGTERIWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMMK 685
Query: 566 ANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQK 625
+ E + + L++ A L+ ++ P + +WL + E K + F +A K
Sbjct: 686 GQIFEDKEQIE-LARD-AYLAGTKVC-PYSIPLWLLLAKLEEKQSVIRARVVF-DRAKVK 741
Query: 626 CPNSGILWAELIKMVPHHDRKSKGKDALVKS 656
P + LW ELIKM S+ + AL K+
Sbjct: 742 NPKNEFLWLELIKMELRAGNISQVRAALAKA 772
Score = 194 (73.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 89/381 (23%), Positives = 161/381 (42%)
Query: 292 ARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWM- 350
AR+V + + PK +W+ A +LE+ G T V I+E+ + + E++ W+
Sbjct: 529 ARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEIL-----WLL 583
Query: 351 --KEAE-IAEKAG------------SDAEE---CKKR-----GSIETARAIFSHACTVFL 387
KE + + + AG S++EE R E AR + + A
Sbjct: 584 YAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARARIESG 643
Query: 388 TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDIL 447
T++ IW K+ LE+ ++ + LL A+ +P + L++M + + ARD
Sbjct: 644 TER-IWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAY 702
Query: 448 QEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG-TERVWMKSAIVERELGN 506
P S +WL KLE E + + RAR++ +A+ E +W++ +E GN
Sbjct: 703 LAGTKVCPYSIPLWLLLAKLE-EKQSVIRARVVFDRAKVKNPKNEFLWLELIKMELRAGN 761
Query: 507 NAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA 566
++ R + + L+ PS LW LE R A +A + C + + +
Sbjct: 762 ISQVRAALAKALQECPSSGLLWTEAIWLEPRAQRKTRATDALRK-CEGNAHLLCTIARML 820
Query: 567 NLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKC 626
LE+K + KAR+ A + N ++W + + GN+ + +
Sbjct: 821 WLEKKAD------KARSWFLKAVKADQDNGDVWCWFYKYSLEAGNEDQQKEVLTSFETAD 874
Query: 627 PNSGILWAELIKMVPHHDRKS 647
P+ G W + K + + RK+
Sbjct: 875 PHHGYFWPSITKDIKN-SRKT 894
Score = 40 (19.1 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 22 VDLKGKLTTVKAKEWERIPEIGDYSRSNK 50
+D KG LT++ + + ++GD ++ K
Sbjct: 237 IDPKGYLTSLNSMVPKNANDLGDIRKARK 265
>UNIPROTKB|I3L7Q4 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0071001 "U4/U6 snRNP" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 Pfam:PF06424 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 Ensembl:ENSSSCT00000022436
Uniprot:I3L7Q4
Length = 783
Score = 739 (265.2 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 226/640 (35%), Positives = 319/640 (49%)
Query: 46 SRSNKRKRFESFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVT------------ 93
++ + R+E PVPDS K Q ++ ++DP GG + T
Sbjct: 168 NKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGXGGLNTPYPGGMTPGLMT 227
Query: 94 ------DLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDIL 147
D+ +G+ R ++ ++L +SDSV+G TVVD GYLT +N + T ++ DI
Sbjct: 228 PGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIK 287
Query: 148 KARKIVRAIQ------------XXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRL 195
KAR ++++++ I KG MCPK+EDVWLEA RL
Sbjct: 288 KARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARL 347
Query: 196 ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRM---ALDEIPDSVRLWKA 252
+P GV+ ++++AAEL+ D K RVLR AL+ +P+SVRLWKA
Sbjct: 348 -QP----GVL------------IYIRAAELETDIRAKKRVLRKPSPALEHVPNSVRLWKA 390
Query: 253 LVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIA 312
VE+ E+ARI+L RAVECCP VELWLALARLETY AR VLNK R IWI
Sbjct: 391 AVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKXRH-------IWIT 443
Query: 313 AAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDA--------- 363
AAKLEEANGNT MV KII+R I +L+ V I+R+ W+++AE +KAGS A
Sbjct: 444 AAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAV 503
Query: 364 ------EECKKRGSIETARA-IFSHACTVFLTKKSIWLKAAQLEKT--------HGSRES 408
EE +K +E A + F+H F + + L+ Q ++ G+
Sbjct: 504 IGIGIEEEDRKHTWMEDADSKAFAHEA--FAHFEVVALEHFQRKEEWFRSSAFFEGTASL 561
Query: 409 LIALLRKAVTYFPQA-EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKL 467
+ A +A + + EVLWLMGAK KWLAGDVPAAR IL A+ E +W A +L
Sbjct: 562 VSATCPRAGAHSALSREVLWLMGAKSKWLAGDVPAARSILALAFQARGRVERLW-AGRRL 620
Query: 468 EFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNL 527
++ + KAR T RV+MKS +E LGN A + EE LK + +
Sbjct: 621 GAGRCLVDPLAWIRXKARSSAPTARVFMKSVKLEWVLGNLAAAQELCEEALKHYEDXWGP 680
Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEEKRNGLNGLSKARAVLS 586
+ ++E HL E A + P + LW LE R GL + A +++
Sbjct: 681 PRLPSLVDEP--HLAERGSAAAVASRELPELRLGLWLESVRLEY-RAGLKNI--ASTLMA 735
Query: 587 VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKC 626
A + P + +W I E++ K ++ AL+KC
Sbjct: 736 KALQECPSSGVLWSEAIFLEARPQRKTKS----VDALKKC 771
Score = 413 (150.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 152/510 (29%), Positives = 232/510 (45%)
Query: 183 PKNEDVWLEACRL----ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRM 238
P + W+ + RL + A+ ++ KG PKS +WL+AA L R +
Sbjct: 301 PHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGVLIYIRAAEL 360
Query: 239 ALDEIPDSVRLWKALVEISSEEEARILLHRAVECC-PLDVELWLALA------RLETY-G 290
D L K + + L AVE P D + L+ A +E +
Sbjct: 361 ETDIRAKKRVLRKPSPALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLA 420
Query: 291 VAR-SVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTW 349
+AR ARK L K R IWI AAKLEEANGNT MV KII+R I +L+ V I+R+ W
Sbjct: 421 LARLETYENARKVLNKXRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQW 480
Query: 350 MKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLT---KKSIWLKAAQLEKTHGSR 406
++ DAEEC K GS+ T +A+ + + +K W++ A K +
Sbjct: 481 IQ----------DAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDAD-SKAF-AH 528
Query: 407 ESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEI-WLAAF 465
E+ A+ +F + E W + + G A A S E+ WL
Sbjct: 529 EAFAHFEVVALEHFQRKEE-WFRSSA--FFEGTASLVSATCPRAGAHSALSREVLWLMGA 585
Query: 466 KLEFENRELERARMLLAKA-RDMGGTERVWMKSAIVERELGNN---AEERGFIEEGLKRF 521
K ++ ++ AR +LA A + G ER+W R LG + +I +
Sbjct: 586 KSKWLAGDVPAARSILALAFQARGRVERLW-----AGRRLGAGRCLVDPLAWIRXKARSS 640
Query: 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYS--LANLEEKRNGLNGLS 579
+++ +LE LG+L A+E + + W L +L ++ + L+
Sbjct: 641 APTARVFMKSVKLEWVLGNLAAAQELCEEALKHYED---XWGPPRLPSLVDEPH----LA 693
Query: 580 KARAVLSVARLKNP-LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIK 638
+ + +VA + P L +WL ++R E + G K A + +AKALQ+CP+SG+LW+E I
Sbjct: 694 ERGSAAAVASRELPELRLGLWLESVRLEYRAGLKNIASTLMAKALQECPSSGVLWSEAIF 753
Query: 639 MVPHHDRKSKGKDALVKSDRDPHVFAAVAK 668
+ RK+K DAL K + DPHV AVAK
Sbjct: 754 LEARPQRKTKSVDALKKCEHDPHVLLAVAK 783
Score = 175 (66.7 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
Identities = 37/93 (39%), Positives = 52/93 (55%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPV 60
R +EEI+ YR + P I+++F DLK KL V +EW IPE+GD +R R+E PV
Sbjct: 123 REKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPV 182
Query: 61 PDSLLQKARQEQQHVIALDPSSRAAGGAESVVT 93
PDS K Q ++ ++DP GG + T
Sbjct: 183 PDSFFAKHLQTGENHTSVDPRQTQFGGXGGLNT 215
Score = 116 (45.9 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634
+N + KAR +L R NP +P W+A+ R E G + A + I K + CP S +W
Sbjct: 283 INDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWL 342
Query: 635 ELIKMVP 641
E ++ P
Sbjct: 343 EAARLQP 349
Score = 55 (24.4 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 635 ELIKMVPHHD---RKSKGKDALVKSDRD--PH---VFAAVAKLFWHDRKVDKARNWFNKA 686
+L M+P H K L+KS R+ PH + A A+L K+ ARN K
Sbjct: 271 DLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKG 330
Query: 687 VSLDPDTGDFW 697
+ P + D W
Sbjct: 331 TEMCPKSEDVW 341
>DICTYBASE|DDB_G0272374 [details] [associations]
symbol:prpf6 "pre-mRNA processing factor 6"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA;ISS] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=ISS] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF06424 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0272374
GenomeReviews:CM000151_GR eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AAFI02000008 GO:GO:0000398 GO:GO:0046540 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_645169.1
ProteinModelPortal:Q55A15 STRING:Q55A15 EnsemblProtists:DDB0233221
GeneID:8618341 KEGG:ddi:DDB_G0272374 InParanoid:Q55A15
ProtClustDB:CLSZ2729243 Uniprot:Q55A15
Length = 1014
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 202/630 (32%), Positives = 309/630 (49%)
Query: 93 TDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKI 152
TDLT VG R +L LKL +SD+V+G T VD GYLT + +I +++E+ DI KAR +
Sbjct: 233 TDLTQVGSARKTVLDLKLHQVSDNVSGKTCVDPKGYLTDLRSKRIASDAEVGDIKKARLL 292
Query: 153 VRA------------IQXXXXXXXXXXXXXXXXXITKGCNMCPKNEDVWLEACRLARPDE 200
++ I I + C CP +E+VW+E L PD
Sbjct: 293 FKSATTSNPKHSPSWIAAAKLEVLAGKIVDARKIIAQACKECPTSEEVWIENANLQTPDN 352
Query: 201 AKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSEE 260
AK V+A+ VR IP SV++WL AA L+ K RVLR AL+ IP SV+LWK VE+ E
Sbjct: 353 AKIVLAQAVRVIPHSVKIWLYAANLEKQLKMKKRVLRRALEFIPTSVKLWKEAVELEEPE 412
Query: 261 EARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEAN 320
+ARILL RAVEC P +++LWLALA LETY AR VLNKAR+ LP IWI+AA+LEE+
Sbjct: 413 DARILLGRAVECVPDNIDLWLALANLETYEKAREVLNKARQALPSSSEIWISAAQLEESQ 472
Query: 321 GNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIF 379
G V KII++ I++L G V++RD W+ EAE +EK T +AI
Sbjct: 473 GKNDNVNKIIKKAIKSLCSGVMNVMNRDKWIAEAEKSEK----------NQYYVTCQAII 522
Query: 380 SHACTVFLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL 436
+ + +K IW+ A+ + GS ++ A+ ++ FP + +WL A+ +
Sbjct: 523 YETIGMGIEDDDRKRIWVIDAEECLSRGSIKTANAIYAHILSIFPTKKSVWLKVAQLEKQ 582
Query: 437 AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-GTERVWM 495
G L++A P E +WL K ++ + ++ +AR +LA+A G+E +W+
Sbjct: 583 HGTKETLDQTLEKATQKCPQYENLWLMYAKEKWISGDVAKAREILAQAFKFNPGSENIWV 642
Query: 496 KSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAK-EAYQSGCNQ 554
+ +E E+ R +++ + +W+ LE LG ++ + + G +
Sbjct: 643 AAVKIESEMNELRAARNLLKKA-REIAGTERIWMKSALLERELGGDQKLELSLIEQGLQK 701
Query: 555 CPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKE 614
PN LW A LEE++ N + + N N L I S ++
Sbjct: 702 YPNSFKLWLMKAQLEERQAIANHQNNQNNQNNQNNQNNQNNQNNNLQQISLTSIEIIRQT 761
Query: 615 ADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGK----DALVKSDRDPHVFAAVAKL- 669
+ A KCPN+G +W E + + ++ + A +K+ D +F +
Sbjct: 762 YKN----ATVKCPNNGSVWIEASRFEKRNQNFNRARALLEQAKLKNPTDDDIFLEFVRFE 817
Query: 670 -FWHDRKVDKARNWFNKAVSLDPDTGDFWA 698
+RK +A + P +G WA
Sbjct: 818 DSLGNRK--QAATILALGIQASPKSGKLWA 845
Score = 434 (157.8 bits), Expect = 6.3e-46, Sum P(2) = 6.3e-46
Identities = 144/518 (27%), Positives = 242/518 (46%)
Query: 6 EIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLL 65
+I+ R P I++ DLK L TV +W +P+ GD SR N+RK+ E + PVPDS+L
Sbjct: 136 KIEKQRESRPKIQQHLQDLKQDLATVSEDQWASLPDAGDLSRRNQRKKMEIYTPVPDSVL 195
Query: 66 QKARQEQQ--HVIALDPSSRAAG-GAESV-------VTDLTAVGEGRGKILTLKLDGISD 115
++A+ E + ++ + + A G G + TDLT VG R +L LKL +SD
Sbjct: 196 ERAKSENETYSILQTNNAMTAPGIGLSGIDNSSGTSTTDLTQVGSARKTVLDLKLHQVSD 255
Query: 116 SVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQXXXXXXXXXXXXXXXXXI 175
+V+G T VD GYLT + +I +++E+ DI KAR + ++
Sbjct: 256 NVSGKTCVDPKGYLTDLRSKRIASDAEVGDIKKARLLFKSATTSN--------------- 300
Query: 176 TKGCNMCPKNEDVWLEACRL----ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKAN 231
PK+ W+ A +L + +A+ ++A+ ++ P S +W++ A L N
Sbjct: 301 -------PKHSPSWIAAAKLEVLAGKIVDARKIIAQACKECPTSEEVWIENANLQTPD-N 352
Query: 232 KSRVLRMALDEIPDSVRLWKALVEISSE-EEARILLHRAVECCPLDVELWLALARLETYG 290
VL A+ IP SV++W + + + + +L RA+E P V+LW LE
Sbjct: 353 AKIVLAQAVRVIPHSVKIWLYAANLEKQLKMKKRVLRRALEFIPTSVKLWKEAVELEEPE 412
Query: 291 VARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKI-------IERGIRALQGEEVV 343
AR +L +A + +P +W+A A LE ++ K E I A Q EE
Sbjct: 413 DARILLGRAVECVPDNIDLWLALANLETYEKAREVLNKARQALPSSSEIWISAAQLEESQ 472
Query: 344 IDRDTWMKEAEIAEKA---G-----------SDAEECKKRGSIETARAIFSHACTVFLT- 388
D K + A K+ G ++AE+ +K T +AI + +
Sbjct: 473 GKNDNVNKIIKKAIKSLCSGVMNVMNRDKWIAEAEKSEKNQYYVTCQAIIYETIGMGIED 532
Query: 389 --KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446
+K IW+ A+ + GS ++ A+ ++ FP + +WL A+ + G
Sbjct: 533 DDRKRIWVIDAEECLSRGSIKTANAIYAHILSIFPTKKSVWLKVAQLEKQHGTKETLDQT 592
Query: 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKA 484
L++A P E +WL K ++ + ++ +AR +LA+A
Sbjct: 593 LEKATQKCPQYENLWLMYAKEKWISGDVAKAREILAQA 630
Score = 420 (152.9 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 107/360 (29%), Positives = 194/360 (53%)
Query: 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS 405
+ W+K A++ ++ G+ +E + ++E A + C + +++WL A+ + G
Sbjct: 570 KSVWLKVAQLEKQHGT--KETLDQ-TLEKA----TQKCPQY---ENLWLMYAKEKWISGD 619
Query: 406 RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAF 465
+L +A + P +E +W+ K + ++ AAR++L++A I +E IW+ +
Sbjct: 620 VAKAREILAQAFKFNPGSENIWVAAVKIESEMNELRAARNLLKKA-REIAGTERIWMKSA 678
Query: 466 KLEFE---NRELERARMLLAKARDMGGTERVW-MKSAIVERELGNNAEERGFIEEGLKRF 521
LE E +++LE + ++ + + ++W MK+ + ER+ N + +
Sbjct: 679 LLERELGGDQKLELS-LIEQGLQKYPNSFKLWLMKAQLEERQAIANHQNNQNNQNNQNNQ 737
Query: 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKA 581
+ N L Q+ L ++ ++ Y++ +CPN +W + E KRN ++A
Sbjct: 738 NNQNNQNNNLQQIS--LTSIEIIRQTYKNATVKCPNNGSVWIEASRFE-KRN--QNFNRA 792
Query: 582 RAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641
RA+L A+LKNP + +I+L +R E GN+K+A + +A +Q P SG LWAELI M P
Sbjct: 793 RALLEQAKLKNPTDDDIFLEFVRFEDSLGNRKQAATILALGIQASPKSGKLWAELIAMEP 852
Query: 642 HHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
H +++K DAL + + DP+VF V+K+FW D K+DKA+ W+ + + P+ GD WA YY
Sbjct: 853 RHSQRNKCVDALNRCNNDPYVFTQVSKIFWMDGKLDKAKQWYQRVTTTFPEFGDGWAYYY 912
Score = 136 (52.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 63/338 (18%), Positives = 134/338 (39%)
Query: 370 GSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLM 429
G + AR I + A ++IW+ A ++E + LL+KA E +W+
Sbjct: 618 GDVAKAREILAQAFKFNPGSENIWVAAVKIESEMNELRAARNLLKKA-REIAGTERIWMK 676
Query: 430 GAK-EKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG 488
A E+ L GD ++++ PNS ++WL +LE E + + + +
Sbjct: 677 SALLERELGGDQKLELSLIEQGLQKYPNSFKLWLMKAQLE-ERQAIANHQNNQNNQNNQN 735
Query: 489 GTERVWMKSAIVERELGNNAEE-RGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEA 547
++ +++ + E R + + P+ ++W+ + E+R + A+
Sbjct: 736 NQNNQNNQNNNLQQISLTSIEIIRQTYKNATVKCPNNGSVWIEASRFEKRNQNFNRARAL 795
Query: 548 YQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAES 607
+ + P ++ E+ L +A +L++ +P + ++W I E
Sbjct: 796 LEQAKLKNPTDDDIFLEFVRFEDS---LGNRKQAATILALGIQASPKSGKLWAELIAMEP 852
Query: 608 KHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVK--------SDRD 659
+H + + AL +C N ++ ++ K+ + K K + D
Sbjct: 853 RHSQRNKC----VDALNRCNNDPYVFTQVSKIFWMDGKLDKAKQWYQRVTTTFPEFGDGW 908
Query: 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFW 697
+ +A + K F + K D+ K V +P+ G+ W
Sbjct: 909 AYYYAFILK-FEPENK-DQI---LKKCVEAEPNLGEHW 941
Score = 123 (48.4 bits), Expect = 6.3e-46, Sum P(2) = 6.3e-46
Identities = 50/202 (24%), Positives = 85/202 (42%)
Query: 445 DILQEAY--ATI--PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAI 499
+I+++ Y AT+ PN+ +W+ A + E N+ RAR LL +A+ T+ ++++
Sbjct: 756 EIIRQTYKNATVKCPNNGSVWIEASRFEKRNQNFNRARALLEQAKLKNPTDDDIFLEFVR 815
Query: 500 VERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCI 559
E LGN + + G++ P LW L +E R + +A CN P
Sbjct: 816 FEDSLGNRKQAATILALGIQASPKSGKLWAELIAMEPRHSQRNKCVDALNR-CNNDP--- 871
Query: 560 PLWYSLANLEEKRNGLNG-LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSF 618
Y + K ++G L KA+ P + W A A + D
Sbjct: 872 ---YVFTQVS-KIFWMDGKLDKAKQWYQRVTTTFPEFGDGW-AYYYAFILKFEPENKDQI 926
Query: 619 IAKALQKCPNSGILWAELIKMV 640
+ K ++ PN G W ++ K V
Sbjct: 927 LKKCVEAEPNLGEHWIKVSKQV 948
>SGD|S000000259 [details] [associations]
symbol:PRP6 "Splicing factor" species:4932 "Saccharomyces
cerevisiae" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 SGD:S000000259
EMBL:BK006936 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0000398
GO:GO:0046540 EMBL:Z46260 KO:K12855 OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:X53465 EMBL:Z35924 PIR:S12319
RefSeq:NP_009611.1 ProteinModelPortal:P19735 SMR:P19735
DIP:DIP-1290N IntAct:P19735 MINT:MINT-392841 STRING:P19735
PaxDb:P19735 PeptideAtlas:P19735 EnsemblFungi:YBR055C GeneID:852344
KEGG:sce:YBR055C CYGD:YBR055c HOGENOM:HOG000246836 OMA:PQGWIAS
NextBio:971082 Genevestigator:P19735 GermOnline:YBR055C
Uniprot:P19735
Length = 899
Score = 344 (126.2 bits), Expect = 3.8e-54, Sum P(2) = 3.8e-54
Identities = 127/479 (26%), Positives = 203/479 (42%)
Query: 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFV--- 58
R E+ + + ++ +F DLK L V EW IP+ D++R NKR R + +
Sbjct: 85 RANEKDDDNSVDSSNVKRQFADLKESLAAVTESEWMDIPDATDFTRRNKRNRIQEQLNRK 144
Query: 59 --PVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDS 116
PDSL+ + + + + + LT I K + +D+
Sbjct: 145 TYAAPDSLIPG--NVDLNKLTEEREKLLQSQIDENLAQLTK--NASNPIQVNKPNAATDA 200
Query: 117 VTGLTVVDLSGYLTRMNDLKITTNSELRDILKA-RKIVRA-----IQXXXXXXXXXXXXX 170
++ L ++ + + ++D + ++R ILK+ RK I
Sbjct: 201 LSYLKDLE-NDRVNSLSDATLEDLQKMRTILKSYRKADPTNPQGWIASARLEEKARKFSV 259
Query: 171 XXXXITKGCNMCPKNEDVWLEACRLARPDE--AKGVVAKGVRQIPKSVRLWLQAAELDHD 228
I GC CP++ D+WLE RL D K +VA + P S LW +A +L+
Sbjct: 260 AKKIIENGCQECPRSSDIWLENIRLHESDVHYCKTLVATAINFNPTSPLLWFKAIDLEST 319
Query: 229 KANKSRVLRMALDEIPDSVRLWKALVEISSEEEARI-LLHRAVECCPLDVELWLALARLE 287
NK RV+R AL EIP LWK V +++ I +L +A + P ++L A L+
Sbjct: 320 TVNKYRVVRKALQEIPRDEGLWKLAVSFEADKAQVIKMLEKATQFIPQSMDLLTAYTNLQ 379
Query: 288 TYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKII---ERGIRALQGEEVVI 344
+Y A+ LN RK LP+E IWI + LEE N V K++ + G+ L
Sbjct: 380 SYHNAKMTLNSFRKILPQEPEIWIISTLLEERNNPDIPVDKLVSLLKEGLLELSKNGYKA 439
Query: 345 DRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQ-LEKTH 403
W+K AE A + C+ +I A + + ++ + Q LEK
Sbjct: 440 TLSAWLKRAEALNDAPNSNLTCQ---AIVYAILEWLRESGEYESELN---NVDQILEKMP 493
Query: 404 GSRESLIALLRKAVTYFPQAEVLW--LMGAKEKWLAGDVPAARDILQEAYATIPNSEEI 460
S+ IA+L+K + + P VLW L A E + + QE NS++I
Sbjct: 494 HSKVQ-IAVLKKLIQWDPCDTVLWSRLKMATESY--HKIEELLAFFQELLFQTKNSDDI 549
Score = 298 (110.0 bits), Expect = 3.8e-54, Sum P(2) = 3.8e-54
Identities = 82/285 (28%), Positives = 137/285 (48%)
Query: 426 LWLMGAKEKWLA--GDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERAR----M 479
L +M E W A GD ++ + P++ ++ KL + +L+ R
Sbjct: 560 LLMMYVSEYWKAQKGDTRQTLVLIDQIIDFAPHNLDLRFFKIKLLGRSLQLDELRDFFQQ 619
Query: 480 LLAKARD--MGGTERVWMKSAIVERELGNNAEERGFIEEG-LKRFPSFFNLWLMLGQLEE 536
+ D + GTER++ K R N E F+ E LK FP +L LGQ+
Sbjct: 620 TFSSLEDFKISGTERLYYKYVNFLRYQDLNEEAIKFLNERCLKSFPICHKFFLQLGQIYH 679
Query: 537 RLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596
+G+++ ++E Y SG PNC LW SL+ ++E L +AR++L LKNP +
Sbjct: 680 SMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIDEI--DLKNPVRARSILDRGLLKNPDDV 737
Query: 597 EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGK----DA 652
++A I+ E + GN +A+ + +ALQK P++ +LW E IK+ H ++ S K DA
Sbjct: 738 LFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDA 797
Query: 653 LVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFW 697
L ++ D V + F+ + + + + W +A+ GD W
Sbjct: 798 LRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYGDTW 842
Score = 124 (48.7 bits), Expect = 0.00060, P = 0.00060
Identities = 30/106 (28%), Positives = 48/106 (45%)
Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587
W+ +LEE+ AK+ ++GC +CP +W L E + + + +++
Sbjct: 244 WIASARLEEKARKFSVAKKIIENGCQECPRSSDIWLENIRLHE-----SDVHYCKTLVAT 298
Query: 588 ARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
A NP +P +W I ES NK + KALQ+ P LW
Sbjct: 299 AINFNPTSPLLWFKAIDLESTTVNKYRV---VRKALQEIPRDEGLW 341
Score = 123 (48.4 bits), Expect = 0.00077, P = 0.00077
Identities = 41/120 (34%), Positives = 56/120 (46%)
Query: 529 LMLGQLEERLGHL-KEAKEAYQSGCNQCPNCIP--LWYSLANLEEKR-NGLNG-----LS 579
L+ Q++E L L K A Q N+ PN L Y L +LE R N L+ L
Sbjct: 169 LLQSQIDENLAQLTKNASNPIQ--VNK-PNAATDALSY-LKDLENDRVNSLSDATLEDLQ 224
Query: 580 KARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKM 639
K R +L R +P NP+ W+A+ R E K A I Q+CP S +W E I++
Sbjct: 225 KMRTILKSYRKADPTNPQGWIASARLEEKARKFSVAKKIIENGCQECPRSSDIWLENIRL 284
Score = 97 (39.2 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
Identities = 40/170 (23%), Positives = 73/170 (42%)
Query: 471 NRELERARMLLAKARDMGGTERVWMK-SAIVERELGNNAEERGFIEEGLKRFPSFFNLWL 529
N E+ R L+ R + +W+ S I E +L N R ++ GL + P ++
Sbjct: 683 NIEMSR-ETYLSGTRLVPNCPLLWVSLSKIDEIDLKNPVRARSILDRGLLKNPDDVLFYI 741
Query: 530 MLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVAR 589
Q+E RLG+L +A+ + P+ LW L K + L K ++ R
Sbjct: 742 AKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLF-KHGNKSSLKKTIFQDALRR 800
Query: 590 LKNPLNPEIWLA-TIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIK 638
+N + + + AE+++ + ++ +AL+KC G W L +
Sbjct: 801 TQNDHRVLLEIGVSFYAEAQYETSLK---WLERALKKCSRYGDTWVWLFR 847
Score = 83 (34.3 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 27/127 (21%), Positives = 58/127 (45%)
Query: 405 SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAA 464
+ E++ L + + FP +L + G++ +R+ +PN +W++
Sbjct: 649 NEEAIKFLNERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSL 708
Query: 465 FKL-EFENRELERARMLLAKARDMGGTERVWMKSAI-VERELGNNAEERGFIEEGLKRFP 522
K+ E + + RAR +L + + ++ + I +E LGN + + + L++FP
Sbjct: 709 SKIDEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFP 768
Query: 523 SFFNLWL 529
S LW+
Sbjct: 769 SNALLWV 775
>CGD|CAL0001343 [details] [associations]
symbol:orf19.6356 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 Pfam:PF06424 SMART:SM00386 CGD:CAL0001343
GO:GO:0005634 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0000398
EMBL:AACQ01000192 EMBL:AACQ01000189 KO:K12855 InterPro:IPR027108
PANTHER:PTHR11246:SF1 RefSeq:XP_711574.1 RefSeq:XP_711643.1
ProteinModelPortal:Q59PD7 STRING:Q59PD7 GeneID:3646751
GeneID:3646834 KEGG:cal:CaO19.13713 KEGG:cal:CaO19.6356
Uniprot:Q59PD7
Length = 911
Score = 512 (185.3 bits), Expect = 2.7e-48, P = 2.7e-48
Identities = 149/540 (27%), Positives = 260/540 (48%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPD-EAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKS 233
IT N PK+E +WL+A L + + V+ KG+ +IP + +LW + EL++D
Sbjct: 319 ITNALNYNPKSEKLWLKATDLETNNINKRKVLMKGLEKIPNNDQLWEKLIELENDPNMVK 378
Query: 234 RVLRMALDEIPDSVRLWKALVEISSEEEARILLHRA---VECCPLDVELWLALARLET-- 288
++L A+ + W AL+ IS+ EE++ +L++A ++ +++W+ +LE
Sbjct: 379 KLLLKAVQLCSQNWEFWSALLNISNYEESKKILNQARKSIKGVKNILKVWITACQLEERE 438
Query: 289 YGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDT 348
YG +NK K + K I+ ++ + + ER + + ++I +
Sbjct: 439 YGEETIDINKLIKLMDKAMKE-ISIYQMTKDDWYKLACDS--ERENFKVTTKAIII---S 492
Query: 349 WMKEAEIAEKA-GSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKA-AQLEKTHGSR 406
++K + + + D ++ G I A++I + T + W K + ++K +
Sbjct: 493 YLKFKGLDQSSIFEDVDKFFNDGYIIVAKSILDYIVTNSSNDINKWKKVFSVIKKFNQEL 552
Query: 407 ESLIALLRKAVTYFPQAEVLWLMGAKEKW-LAGDVPAARDILQEAYATIPNSEEIWLAAF 465
L + KA++ PQ + +LM AK+KW L+ D+P AR IL P I A
Sbjct: 553 PLLFSYYDKAISLNPQVPLFYLMYAKDKWQLSKDIPQARSILNSGELANPTDLSIKFAII 612
Query: 466 KLEFENRELERARMLLAKARDMGG--TERVWMKSAIVERELGNNAEE-RGFIEEGLKRFP 522
KLE L A + D +E+ W K + R L ++ + I++ LK FP
Sbjct: 613 KLELITGNLLNAEKYIKHIIDTKPMESEKFWYKYIHILRCLNSDITVLKDVIQKALKLFP 672
Query: 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582
+ + L+L Q+ E + L++A+E G +CP CI LW L+ ++EK + +AR
Sbjct: 673 NCWKLYLQNIQILEDIDELEQARENALVGVKKCPQCIYLWIKLSQIDEKAQII---IRAR 729
Query: 583 AVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPH 642
++L A L+NP NPEIW+ I+ E + GN + KAL++ P LW + ++P
Sbjct: 730 SILDQAILQNPNNPEIWVYKIQFEKRIGNLSSLQNLTNKALKQFPTDPWLWIINLSLIPK 789
Query: 643 -HDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
RK+ DAL ++ + FW D K K++NWF +++ D GD W+ Y
Sbjct: 790 MSQRKTIFLDALKATNNSNLILLISGVFFWFDGKYSKSKNWFERSLQSDNTNGDIWSWMY 849
Score = 356 (130.4 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 155/663 (23%), Positives = 294/663 (44%)
Query: 14 NPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLLQKARQEQQ 73
N +F DLK +L + +W +PE GD +R NKR R LL++ +Q
Sbjct: 116 NDNSSTQFSDLKRQLANLTEDDWLNLPEPGDMTRKNKRTR----------LLEQQQQRMY 165
Query: 74 HVI-ALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDS---VTGLTVVDLSGYL 129
L +S +A G + T+ ++ E R K+L +LD + + G ++ + S
Sbjct: 166 SAPDTLISTSSSATGTNT--TNFKSLSESRDKLLGSQLDNLLPAYVKTNGQSINNSSSVS 223
Query: 130 TRMND--LKIT---TNSELRDILKARKIVRAIQXXXXXXXXXXXXXXXXX---------- 174
+ L +T +S+ ++ K R I+ +++
Sbjct: 224 EELQQSILNMTGVEQDSKYANLQKNRVILSSLRKSEPYKPSSWISSARLEEQDGKNLKLA 283
Query: 175 ---ITKGCNMCPKNEDVWLEACRLARPDE--AKGVVAKGVRQIPKSVRLWLQAAELDHDK 229
I +GC CP+N+++WLE RL + D K ++ + PKS +LWL+A +L+ +
Sbjct: 284 KQYILEGCKKCPRNDEIWLENIRLNQSDIKLCKQLITNALNYNPKSEKLWLKATDLETNN 343
Query: 230 ANKSRVLRMALDEIPDSVRLWKALVEISSEEE-ARILLHRAVECCPLDVELWLALARLET 288
NK +VL L++IP++ +LW+ L+E+ ++ + LL +AV+ C + E W AL +
Sbjct: 344 INKRKVLMKGLEKIPNNDQLWEKLIELENDPNMVKKLLLKAVQLCSQNWEFWSALLNISN 403
Query: 289 YGVARSVLNKARKKLPKERAI---WIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVID 345
Y ++ +LN+ARK + + I WI A +LEE + I + I+ + ++ + +
Sbjct: 404 YEESKKILNQARKSIKGVKNILKVWITACQLEEREYGEETID--INKLIKLM--DKAMKE 459
Query: 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS 405
+ + K D+E ++ + T I S+ L + SI+ ++K
Sbjct: 460 ISIYQMTKDDWYKLACDSE--RENFKVTTKAIIISYLKFKGLDQSSIF---EDVDKFFND 514
Query: 406 RESLIA--LLRKAVTYFPQAEVLWL-MGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL 462
++A +L VT W + + K ++P +A + P +L
Sbjct: 515 GYIIVAKSILDYIVTNSSNDINKWKKVFSVIKKFNQELPLLFSYYDKAISLNPQVPLFYL 574
Query: 463 AAFKLEFE-NRELERARMLLAKARDMGGTERVWMKSAIVEREL--GN--NAEERGFIEEG 517
K +++ ++++ +AR +L + ++ + +K AI++ EL GN NAE+ +I+
Sbjct: 575 MYAKDKWQLSKDIPQARSIL-NSGELANPTDLSIKFAIIKLELITGNLLNAEK--YIKHI 631
Query: 518 LKRFP-SFFNLWLMLGQLEERLGH-LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL 575
+ P W + L + K+ Q PNC L+ L N++ + +
Sbjct: 632 IDTKPMESEKFWYKYIHILRCLNSDITVLKDVIQKALKLFPNCWKLY--LQNIQILED-I 688
Query: 576 NGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635
+ L +AR V K P +W+ + + K A S + +A+ + PN+ +W
Sbjct: 689 DELEQARENALVGVKKCPQCIYLWIKLSQIDEKAQIIIRARSILDQAILQNPNNPEIWVY 748
Query: 636 LIK 638
I+
Sbjct: 749 KIQ 751
>UNIPROTKB|Q59PD7 [details] [associations]
symbol:PRP6 "Putative uncharacterized protein PRP6"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 Pfam:PF06424 SMART:SM00386
CGD:CAL0001343 GO:GO:0005634 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0000398 EMBL:AACQ01000192 EMBL:AACQ01000189 KO:K12855
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_711574.1
RefSeq:XP_711643.1 ProteinModelPortal:Q59PD7 STRING:Q59PD7
GeneID:3646751 GeneID:3646834 KEGG:cal:CaO19.13713
KEGG:cal:CaO19.6356 Uniprot:Q59PD7
Length = 911
Score = 512 (185.3 bits), Expect = 2.7e-48, P = 2.7e-48
Identities = 149/540 (27%), Positives = 260/540 (48%)
Query: 175 ITKGCNMCPKNEDVWLEACRLARPD-EAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKS 233
IT N PK+E +WL+A L + + V+ KG+ +IP + +LW + EL++D
Sbjct: 319 ITNALNYNPKSEKLWLKATDLETNNINKRKVLMKGLEKIPNNDQLWEKLIELENDPNMVK 378
Query: 234 RVLRMALDEIPDSVRLWKALVEISSEEEARILLHRA---VECCPLDVELWLALARLET-- 288
++L A+ + W AL+ IS+ EE++ +L++A ++ +++W+ +LE
Sbjct: 379 KLLLKAVQLCSQNWEFWSALLNISNYEESKKILNQARKSIKGVKNILKVWITACQLEERE 438
Query: 289 YGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDT 348
YG +NK K + K I+ ++ + + ER + + ++I +
Sbjct: 439 YGEETIDINKLIKLMDKAMKE-ISIYQMTKDDWYKLACDS--ERENFKVTTKAIII---S 492
Query: 349 WMKEAEIAEKA-GSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKA-AQLEKTHGSR 406
++K + + + D ++ G I A++I + T + W K + ++K +
Sbjct: 493 YLKFKGLDQSSIFEDVDKFFNDGYIIVAKSILDYIVTNSSNDINKWKKVFSVIKKFNQEL 552
Query: 407 ESLIALLRKAVTYFPQAEVLWLMGAKEKW-LAGDVPAARDILQEAYATIPNSEEIWLAAF 465
L + KA++ PQ + +LM AK+KW L+ D+P AR IL P I A
Sbjct: 553 PLLFSYYDKAISLNPQVPLFYLMYAKDKWQLSKDIPQARSILNSGELANPTDLSIKFAII 612
Query: 466 KLEFENRELERARMLLAKARDMGG--TERVWMKSAIVERELGNNAEE-RGFIEEGLKRFP 522
KLE L A + D +E+ W K + R L ++ + I++ LK FP
Sbjct: 613 KLELITGNLLNAEKYIKHIIDTKPMESEKFWYKYIHILRCLNSDITVLKDVIQKALKLFP 672
Query: 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582
+ + L+L Q+ E + L++A+E G +CP CI LW L+ ++EK + +AR
Sbjct: 673 NCWKLYLQNIQILEDIDELEQARENALVGVKKCPQCIYLWIKLSQIDEKAQII---IRAR 729
Query: 583 AVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPH 642
++L A L+NP NPEIW+ I+ E + GN + KAL++ P LW + ++P
Sbjct: 730 SILDQAILQNPNNPEIWVYKIQFEKRIGNLSSLQNLTNKALKQFPTDPWLWIINLSLIPK 789
Query: 643 -HDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701
RK+ DAL ++ + FW D K K++NWF +++ D GD W+ Y
Sbjct: 790 MSQRKTIFLDALKATNNSNLILLISGVFFWFDGKYSKSKNWFERSLQSDNTNGDIWSWMY 849
Score = 356 (130.4 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 155/663 (23%), Positives = 294/663 (44%)
Query: 14 NPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFVPVPDSLLQKARQEQQ 73
N +F DLK +L + +W +PE GD +R NKR R LL++ +Q
Sbjct: 116 NDNSSTQFSDLKRQLANLTEDDWLNLPEPGDMTRKNKRTR----------LLEQQQQRMY 165
Query: 74 HVI-ALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDS---VTGLTVVDLSGYL 129
L +S +A G + T+ ++ E R K+L +LD + + G ++ + S
Sbjct: 166 SAPDTLISTSSSATGTNT--TNFKSLSESRDKLLGSQLDNLLPAYVKTNGQSINNSSSVS 223
Query: 130 TRMND--LKIT---TNSELRDILKARKIVRAIQXXXXXXXXXXXXXXXXX---------- 174
+ L +T +S+ ++ K R I+ +++
Sbjct: 224 EELQQSILNMTGVEQDSKYANLQKNRVILSSLRKSEPYKPSSWISSARLEEQDGKNLKLA 283
Query: 175 ---ITKGCNMCPKNEDVWLEACRLARPDE--AKGVVAKGVRQIPKSVRLWLQAAELDHDK 229
I +GC CP+N+++WLE RL + D K ++ + PKS +LWL+A +L+ +
Sbjct: 284 KQYILEGCKKCPRNDEIWLENIRLNQSDIKLCKQLITNALNYNPKSEKLWLKATDLETNN 343
Query: 230 ANKSRVLRMALDEIPDSVRLWKALVEISSEEE-ARILLHRAVECCPLDVELWLALARLET 288
NK +VL L++IP++ +LW+ L+E+ ++ + LL +AV+ C + E W AL +
Sbjct: 344 INKRKVLMKGLEKIPNNDQLWEKLIELENDPNMVKKLLLKAVQLCSQNWEFWSALLNISN 403
Query: 289 YGVARSVLNKARKKLPKERAI---WIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVID 345
Y ++ +LN+ARK + + I WI A +LEE + I + I+ + ++ + +
Sbjct: 404 YEESKKILNQARKSIKGVKNILKVWITACQLEEREYGEETID--INKLIKLM--DKAMKE 459
Query: 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS 405
+ + K D+E ++ + T I S+ L + SI+ ++K
Sbjct: 460 ISIYQMTKDDWYKLACDSE--RENFKVTTKAIIISYLKFKGLDQSSIF---EDVDKFFND 514
Query: 406 RESLIA--LLRKAVTYFPQAEVLWL-MGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL 462
++A +L VT W + + K ++P +A + P +L
Sbjct: 515 GYIIVAKSILDYIVTNSSNDINKWKKVFSVIKKFNQELPLLFSYYDKAISLNPQVPLFYL 574
Query: 463 AAFKLEFE-NRELERARMLLAKARDMGGTERVWMKSAIVEREL--GN--NAEERGFIEEG 517
K +++ ++++ +AR +L + ++ + +K AI++ EL GN NAE+ +I+
Sbjct: 575 MYAKDKWQLSKDIPQARSIL-NSGELANPTDLSIKFAIIKLELITGNLLNAEK--YIKHI 631
Query: 518 LKRFP-SFFNLWLMLGQLEERLGH-LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL 575
+ P W + L + K+ Q PNC L+ L N++ + +
Sbjct: 632 IDTKPMESEKFWYKYIHILRCLNSDITVLKDVIQKALKLFPNCWKLY--LQNIQILED-I 688
Query: 576 NGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635
+ L +AR V K P +W+ + + K A S + +A+ + PN+ +W
Sbjct: 689 DELEQARENALVGVKKCPQCIYLWIKLSQIDEKAQIIIRARSILDQAILQNPNNPEIWVY 748
Query: 636 LIK 638
I+
Sbjct: 749 KIQ 751
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 204 (76.9 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 83/326 (25%), Positives = 135/326 (41%)
Query: 375 ARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEK 434
AR+IF A V T +W++ + E + + LL +AVT P+ + LW +
Sbjct: 91 ARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYME 150
Query: 435 WLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVW 494
G++P R + + + P+ E W A KLE E ERAR + + + R W
Sbjct: 151 ETLGNIPGTRQVFERWMSWEPD-EGAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRNW 209
Query: 495 MKSAIVERELGNN---AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551
+K A E E G + E G E L L++ + E +L + A+ Y+
Sbjct: 210 IKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYA 269
Query: 552 CNQCPNC--IPLWYSLANLEEK---RNGLNGLSKA-RAVLSVARLKNPL-NPEIWLATIR 604
++ P I L + E++ R G+ + A R V +LK L N ++W R
Sbjct: 270 LDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFAR 329
Query: 605 AESKHGNKKEADSFIAKALQKCPNSGIL--WAELIKMVPHHD--RKSKGKDALVKSDRDP 660
E + G+ + +A+ + P S W I + + + + KD DR
Sbjct: 330 LEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDI----DRAR 385
Query: 661 HVFAAVAKLFWHDRKVDKARNWFNKA 686
V+ KL H +K A+ W KA
Sbjct: 386 QVYTECLKLIPH-KKFTFAKVWLMKA 410
Score = 156 (60.0 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 73/335 (21%), Positives = 135/335 (40%)
Query: 260 EEARILLHRAVECCPLDVELWLALARLET-YGVA---RSVLNKARKKLPKE---RAIWIA 312
E AR + R P + W+ AR E YG + R V A + L ++ ++IA
Sbjct: 190 ERARAIFQRFTIVHP-EPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIA 248
Query: 313 AAKLEEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGS 371
A+ E I + + L + + + + + E + ++ G + KR
Sbjct: 249 YARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKR-- 306
Query: 372 IETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE------- 424
R + L +W A+LE+ G E + + +A+ P ++
Sbjct: 307 ----RVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRR 362
Query: 425 --VLWLMGAK-EKWLAGDVPAARDILQEAYATIPNSE----EIWLAAFKLEFENRELERA 477
LW+ A E+ A D+ AR + E IP+ + ++WL + E L+ A
Sbjct: 363 YIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAA 422
Query: 478 RMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER 537
R L +A M ++++ +ER+L R E+ ++ PS W+ +LE
Sbjct: 423 RKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQYAELERG 482
Query: 538 LGHLKEAKEAYQSGCNQCPNCIP--LWYSLANLEE 570
L + A+ Y+ G +Q +P +W + + E+
Sbjct: 483 LDDTERARAIYELGIDQPTLDMPELVWKAYIDFED 517
Score = 129 (50.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 98/422 (23%), Positives = 164/422 (38%)
Query: 209 VRQIPKSVRLWLQAA--ELDHDKANKSR-VLRMALDEIPDSVRLWKALVEISSEEE---- 261
VR+ ++ W++ A EL+ + ++R + ALD SV LW +E
Sbjct: 65 VRRNRINMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYIESEMRNRNINH 124
Query: 262 ARILLHRAVECCPLDVELWLALARLE-TYGV---ARSVLNKARKKLPKERAIWIAAAKLE 317
AR LL RAV P +LW +E T G R V + P E A W A KLE
Sbjct: 125 ARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGA-WSAYIKLE 183
Query: 318 EANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRG-SIETAR 376
+ I +R + E R+ W+K A E+ G+ + G ++ET
Sbjct: 184 KRYNEFERARAIFQR-FTIVHPEP----RN-WIKWARFEEEYGTSDLVREVYGLAVETLG 237
Query: 377 AIFSHACTVFLTKKSIWLKAAQLEKTHGS-RESLIALLR-KAVTYFPQAEVLWLMGAKEK 434
F +F+ K + E+ + +L L R K++T +
Sbjct: 238 EDFMDE-KLFIAYARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDRE 296
Query: 435 WLAGDVPAARDI-LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKA-------RD 486
+ + A R + +E + ++W +LE ++ + ER R + +A ++
Sbjct: 297 GVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQE 356
Query: 487 MGGTER---VWMKSAIVERELGNNAEE-RGFIEEGLKRFP----SFFNLWLMLGQLEERL 538
R +W+ A+ E + + R E LK P +F +WLM Q E R
Sbjct: 357 KRHWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQ 416
Query: 539 GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598
+L+ A++ CP L+ +LE + L + R + NP N +
Sbjct: 417 LNLQAARKTLGQAIGMCPKD-KLFRGYIDLERQ---LFEFVRCRTLYEKQIEWNPSNSQS 472
Query: 599 WL 600
W+
Sbjct: 473 WI 474
Score = 43 (20.2 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 20 EFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRKRFESFV 58
E VD + + + + E+ +Y + KRK FE +V
Sbjct: 28 EAVDRQEPSLQAPTQRFADLEELHEY-QGRKRKEFEDYV 65
>TAIR|locus:2086132 [details] [associations]
symbol:HCF107 "high chlorophyll fluorescent 107"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;IMP]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006417 "regulation
of translation" evidence=RCA;IMP] [GO:0009657 "plastid
organization" evidence=RCA;IMP] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005774 EMBL:CP002686 GO:GO:0006417
GO:GO:0009941 GO:GO:0006396 GO:GO:0009657 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 EMBL:AY093112 EMBL:BT008405
IPI:IPI00517465 RefSeq:NP_188329.1 UniGene:At.22706
ProteinModelPortal:Q8RWG2 SMR:Q8RWG2 STRING:Q8RWG2 PaxDb:Q8RWG2
PRIDE:Q8RWG2 EnsemblPlants:AT3G17040.1 GeneID:820961
KEGG:ath:AT3G17040 TAIR:At3g17040 eggNOG:NOG300398
InParanoid:Q8RWG2 OMA:MEWKEGN PhylomeDB:Q8RWG2
ProtClustDB:CLSN2684191 ArrayExpress:Q8RWG2 Genevestigator:Q8RWG2
Uniprot:Q8RWG2
Length = 652
Score = 183 (69.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 89/351 (25%), Positives = 139/351 (39%)
Query: 234 RVLRMALDEIPDSVRLWKALVEISSEE----EARILLHRAVECCPLDV----ELWLALA- 284
++L + P+ R + AL +I S++ EARIL + + + + W L
Sbjct: 189 KILEKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLEN 248
Query: 285 RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVI 344
RL AR + + A K A W A LE GN S ++ +G++ G I
Sbjct: 249 RLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFC-GRNEYI 307
Query: 345 DRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHG 404
+ + EA K G E AR +F A + WL AQLE
Sbjct: 308 YQTLALLEA--------------KAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQE 353
Query: 405 SRESLIALLRKAVTYFPQAEVLW-LMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463
+ L KAV P+ W + G E + G+V R +L+ +A P + +
Sbjct: 354 RYPAARKLFEKAVQASPKNRFAWHVWGVFEAGV-GNVERGRKLLKIGHALNPRDPVLLQS 412
Query: 464 AFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNNAEERGFIEEGLK--- 519
LE+++ AR LL +A ++ + VW+ +E + GN R + L
Sbjct: 413 LGLLEYKHSSANLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDA 472
Query: 520 RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570
S G LE+R G+L A+ ++S N W + A LEE
Sbjct: 473 NTESASRCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEE 523
Score = 153 (58.9 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 87/368 (23%), Positives = 138/368 (37%)
Query: 338 QGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAA 397
+GEE + + + E SD E ++ G AR A + KK +
Sbjct: 89 EGEESNTEEGVLVVRRPLLEN--SDKESSEEEGKKYPARI---DAGLSNIAKK---MPIF 140
Query: 398 QLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDV--PAARDILQEAYATIP 455
+ E++ S S A +A P A L L K K LA + A IL++ A P
Sbjct: 141 EPERSESSSSSSAAAAARAQER-PLAVNLDLSLYKAKVLARNFRYKDAEKILEKCIAYWP 199
Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKA--RDMGGTERVWMKSAIVERELGNNAEERGF 513
++A K+ + +L AR+L K G +W A++E LGN R
Sbjct: 200 EDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGNVRRAREL 259
Query: 514 IEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRN 573
+ W LE + G++ +A+ G C ++ +LA LE K
Sbjct: 260 FDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALLEAKAG 319
Query: 574 GLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI-- 631
+AR + A + N + WLA + E + A KA+Q P +
Sbjct: 320 RYE---QARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAW 376
Query: 632 -LWAELIKMVPHHDRKSKG-KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689
+W V + +R K K + RDP + ++ L + + AR +A L
Sbjct: 377 HVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRRASEL 436
Query: 690 DPDTGDFW 697
DP W
Sbjct: 437 DPRHQPVW 444
Score = 149 (57.5 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 79/304 (25%), Positives = 120/304 (39%)
Query: 275 LDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIER 332
LD+ L+ A LAR Y A +L K P++ ++A K+ + + E+
Sbjct: 168 LDLSLYKAKVLARNFRYKDAEKILEKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEK 227
Query: 333 GIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSI 392
G ++ QGE I W A + + G+ + AR +F A TV KK +
Sbjct: 228 GCQSTQGENSYI----WQCWAVLENRLGN----------VRRARELFD-AATV-ADKKHV 271
Query: 393 --WLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEA 450
W A LE G+ LL K + + + E ++ A + AG AR + ++A
Sbjct: 272 AAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQA 331
Query: 451 YATIPNSEEI--WLAAFKLEFENRELERARMLLAKARDMGGTER-VWMKSAIVERELGNN 507
TI NS WLA +LE + AR L KA R W + E +GN
Sbjct: 332 --TICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNV 389
Query: 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567
R ++ G P L LG LE + A+ + P P+W +
Sbjct: 390 ERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRRASELDPRHQPVWIAWGW 449
Query: 568 LEEK 571
+E K
Sbjct: 450 MEWK 453
Score = 140 (54.3 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 74/320 (23%), Positives = 125/320 (39%)
Query: 312 AAAKLEE----ANGNTSMV-GKIIERGIRALQGEEVVIDRDT-WMKEAEIAEKAGSDAEE 365
AAA+ +E N + S+ K++ R R E+++ W ++ G +
Sbjct: 155 AAARAQERPLAVNLDLSLYKAKVLARNFRYKDAEKILEKCIAYWPEDGRPYVALG---KI 211
Query: 366 CKKRGSIETARAIFSHACTVFLTKKS-IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE 424
K+ + AR ++ C + S IW A LE G+ L A +
Sbjct: 212 LSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGNVRRARELFDAATVADKKHV 271
Query: 425 VLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKA 484
W A + G++ AR++L + +E I+ LE + E+AR L +A
Sbjct: 272 AAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQA 331
Query: 485 RDMGGTERV-WMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543
W+ A +E + R E+ ++ P W + G E +G+++
Sbjct: 332 TICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVER 391
Query: 544 AKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATI 603
++ + G P L SL LE K + N ARA+L A +P + +W+A
Sbjct: 392 GRKLLKIGHALNPRDPVLLQSLGLLEYKHSSAN---LARALLRRASELDPRHQPVWIAWG 448
Query: 604 RAESKHGNKKEADSFIAKAL 623
E K GN A +AL
Sbjct: 449 WMEWKEGNTTTARELYQRAL 468
Score = 136 (52.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 50/211 (23%), Positives = 88/211 (41%)
Query: 496 KSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN-- 553
K+ ++ R E+ +E+ + +P ++ LG++ + L EA+ Y+ GC
Sbjct: 174 KAKVLARNFRYKDAEK-ILEKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQST 232
Query: 554 QCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKK 613
Q N +W A LE N L + +AR + A + + + W E K GN
Sbjct: 233 QGENSY-IWQCWAVLE---NRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNIS 288
Query: 614 EADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKG----KDALVKSDRDPHVFAAVAKL 669
+A + +AK L+ C + ++ L + R + K A + + R + A A+L
Sbjct: 289 KARNLLAKGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQL 348
Query: 670 FWHDRKVDKARNWFNKAVSLDPDTGDFWALY 700
+ AR F KAV P W ++
Sbjct: 349 EIQQERYPAARKLFEKAVQASPKNRFAWHVW 379
Score = 132 (51.5 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 61/249 (24%), Positives = 110/249 (44%)
Query: 175 ITKGCNMCPKNEDVW-----LEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELD--H 227
+ KG C +NE ++ LEA + R ++A+ + + +S WL A+L+
Sbjct: 294 LAKGLKFCGRNEYIYQTLALLEA-KAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQ 352
Query: 228 DKANKSRVL-RMALDEIPDSVRLWKA--LVE--ISSEEEARILLHRAVECCPLDVELWLA 282
++ +R L A+ P + W + E + + E R LL P D L +
Sbjct: 353 ERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQS 412
Query: 283 LARLE----TYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQ 338
L LE + +AR++L +A + P+ + +WIA +E GNT+ ++ +R +
Sbjct: 413 LGLLEYKHSSANLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALS--- 469
Query: 339 GEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQ 398
ID +T + A +A E+ + G++ AR +F + + W+ AQ
Sbjct: 470 -----IDANT--ESASRCLQAWGVLEQ--RAGNLSAARRLFRSSLNINSQSYVTWMTWAQ 520
Query: 399 LEKTHGSRE 407
LE+ G E
Sbjct: 521 LEEDQGDTE 529
Score = 121 (47.7 bits), Expect = 0.00084, P = 0.00084
Identities = 66/291 (22%), Positives = 118/291 (40%)
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEA-YATIPNSEEIWLAAFKLEFE 470
+L K + Y+P+ ++ K + AR + ++ +T + IW LE
Sbjct: 190 ILEKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENR 249
Query: 471 NRELERARMLLAKARDMGGTERV--WMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLW 528
+ RAR L A + + V W A +E + GN ++ R + +GLK ++
Sbjct: 250 LGNVRRARELF-DAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIY 308
Query: 529 LMLGQLEERLGHLKEAKEAYQSG--CNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLS 586
L LE + G ++A+ ++ CN +C W + A LE ++ AR +
Sbjct: 309 QTLALLEAKAGRYEQARYLFKQATICNS-RSCAS-WLAWAQLEIQQERYPA---ARKLFE 363
Query: 587 VARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRK 646
A +P N W E+ GN + + P +L L + H
Sbjct: 364 KAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSA 423
Query: 647 SKGKDALVK-SDRDP-H--VFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693
+ + L + S+ DP H V+ A + W + AR + +A+S+D +T
Sbjct: 424 NLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANT 474
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 179 (68.1 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 93/384 (24%), Positives = 161/384 (41%)
Query: 260 EEARILLHRAVECCPLDVELWLALARLETYG--VAR--SVLNKARKKLPK-ERA--IWIA 312
E AR + R V C P V ++ A+ E G VAR SV +A +KL E A +++A
Sbjct: 210 ERARTIYERFVLCHP-KVSAYIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVA 268
Query: 313 AAKLEEANGNTSMVGKIIERGIRAL-QGEEVVIDRDTWMKEAEIAEKAG-SDAEECKKRG 370
A+ EE I + + + +G + R E + +K G DA K+R
Sbjct: 269 FAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRF 328
Query: 371 SIET-ARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE----- 424
E R S+ + W +LE++ G+++ + + +A+ P AE
Sbjct: 329 QYEDEVRKSPSNYDS--------WFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYW 380
Query: 425 ----VLWLMGAK-EKWLAGDVPAARDILQEAYATIPNSE----EIWLAAFKLEFENRELE 475
LW+ A E+ D+ RD+ +E IP+S+ +IWL A + E L
Sbjct: 381 QRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLT 440
Query: 476 RARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLE 535
AR +L A ++++ K +E +LGN R E L+ P W +LE
Sbjct: 441 GARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELE 500
Query: 536 ERLGHLKEAKEAYQSGCNQCPNCIP--LWYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593
L + A+ ++ +Q +P LW + + E L + RA+ L
Sbjct: 501 RSLVETERARAIFELAISQPALDMPELLWKAYIDFEISEGELE---RTRALYE-RLLDRT 556
Query: 594 LNPEIWLATIRAESKHGNKKEADS 617
+ ++W++ + E+ +E ++
Sbjct: 557 KHYKVWVSFAKFEASAAELEEDEN 580
Score = 161 (61.7 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 72/331 (21%), Positives = 127/331 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE +K AR+++ A ++WLK A+ E + S + +AVT P+
Sbjct: 102 EESQK--DYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRV 159
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
+ LW + + G++ AR I + P+ + WL+ K E E+ERAR + +
Sbjct: 160 DQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQG-WLSFIKFELRYNEIERARTIYER 218
Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN---LWLMLGQLEERLGH 540
+++ A E + G A R E ++ L++ + EER
Sbjct: 219 FVLCHPKVSAYIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKE 278
Query: 541 LKEAKEAYQSGCNQCPN--CIPLWYSLANLEEKRNGLNGLS-----KARAVLSVARLKNP 593
++ A+ Y+ + P L+ E++ G+ K R K+P
Sbjct: 279 VERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSP 338
Query: 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHDRKSKGKD 651
N + W +R E GNK +A+ P W I + ++ + +
Sbjct: 339 SNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIET 398
Query: 652 ALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682
++ RD V+ KL H K A+ W
Sbjct: 399 EDIERTRD--VYRECLKLIPHS-KFSFAKIW 426
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 171 (65.3 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 107/465 (23%), Positives = 184/465 (39%)
Query: 276 DVELWLALARLET----YGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331
++++W+ A+ E Y ARSV +A + + +W+ A+ E N + + +
Sbjct: 77 NIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWD 136
Query: 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS 391
R + L +D+ W K + EK G+ + AR IF +K+
Sbjct: 137 RSVTLLPR----VDQ-LWEKYIYMEEKLGN----------VTGARQIFERWMNWSPDQKA 181
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAY 451
WL + E + E ++ + V P+ E G V AR++ + A
Sbjct: 182 -WLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEMKRGGQVKLAREVYERAV 240
Query: 452 ATIPNSEE--IWLAAFKLEFENR--ELERARMLLAKARD---MGGTERVWMKSAIVEREL 504
+ N EE I +F EFE R E+ERAR + A D G E ++ K E++
Sbjct: 241 DKLANDEEAEILFVSFA-EFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQY 299
Query: 505 GNN--------AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556
G+ ++R E+ + + P ++ W +LEE +G+ +E Y+ P
Sbjct: 300 GDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVP 359
Query: 557 NC---------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP----EIWLATI 603
I LW + A EE + + R V P +IWL
Sbjct: 360 PAQEKRFWQRYIYLWINYALYEEIET--KDVERTRDVYRECLKLIPHTKFSFAKIWLLAA 417
Query: 604 RAESKHGNKKEADSFIAKALQKCPNSGIL--WAEL-IKMVPHHDRKSKGKDALVK-SDRD 659
E + N A + A+ K P I + E+ +K+V + DR K + ++ S +
Sbjct: 418 EYEIRQLNLTGARQILGNAIGKAPKVKIFKKYIEMELKLV-NIDRCRKLYERFLEWSPEN 476
Query: 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVS---LD-PDTGDFWALY 700
+ + A+ + ++AR F A+S LD P+ W Y
Sbjct: 477 CYAWRNYAEFEISLAETERARAIFELAISQPALDMPEL--LWKTY 519
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 89/382 (23%), Positives = 153/382 (40%)
Query: 260 EEARILLHRAVECCP-LDVELWLALARLETYG---VARSVLNKARKKLPK-ERA--IWIA 312
E AR + R V C P + + A ++ G +AR V +A KL E A ++++
Sbjct: 196 ERARSIYERFVLCHPKVSAFIRYAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVS 255
Query: 313 AAKLEEANGNTS---MVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAG-SDAEECKK 368
A+ EE + K IR + EE+ + E + +K G DA KK
Sbjct: 256 FAEFEERCKEVERARFIYKFALDHIRKGRAEELY--KKFVAFEKQYGDKEGIEDAIVGKK 313
Query: 369 RGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE---- 424
R E + + L S W +LE++ G+++ + + +A+ P A+
Sbjct: 314 RFEYEDE--VSKNP----LNYDS-WFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRF 366
Query: 425 -----VLWLMGAK-EKWLAGDVPAARDILQEAYATIPNSE----EIWLAAFKLEFENREL 474
LW+ A E+ DV RD+ +E IP+++ +IWL A + E L
Sbjct: 367 WQRYIYLWINYALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNL 426
Query: 475 ERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQL 534
AR +L A +++ K +E +L N R E L+ P W +
Sbjct: 427 TGARQILGNAIGKAPKVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEF 486
Query: 535 EERLGHLKEAKEAYQSGCNQCPNCIP--LWYSLANLEEKRNGLNGLSKARAVLSVARLKN 592
E L + A+ ++ +Q +P LW + + E K RA+ L
Sbjct: 487 EISLAETERARAIFELAISQPALDMPELLWKTYIDFEISEGEFE---KTRALYE-RLLDR 542
Query: 593 PLNPEIWLATIRAESKHGNKKE 614
+ ++W++ + E+ KE
Sbjct: 543 TKHCKVWISFAKFEASASEHKE 564
>DICTYBASE|DDB_G0280363 [details] [associations]
symbol:DDB_G0280363 species:44689 "Dictyostelium
discoideum" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 dictyBase:DDB_G0280363 GO:GO:0005622
EMBL:AAFI02000035 EMBL:AAFI02000036 GO:GO:0006396 Gene3D:1.25.40.10
RefSeq:XP_641155.1 RefSeq:XP_641400.1 ProteinModelPortal:Q54VF4
GeneID:8622534 GeneID:8622535 KEGG:ddi:DDB_G0280363
KEGG:ddi:DDB_G0280519 eggNOG:NOG282937 InParanoid:Q54VF5
ProtClustDB:CLSZ2497219 Uniprot:Q54VF4
Length = 1304
Score = 169 (64.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 68/275 (24%), Positives = 117/275 (42%)
Query: 367 KKRGSIETARAIFSHACTVFLTKKSIW---LKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
K++ +E A + +V L +K W L+ A L + + RK + P
Sbjct: 744 KEKEGLEIAMEFAFQSLSV-LPEKVHWRVYLELADLANRQNNLKLARKFYRKVTSTQPYI 802
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
WL AK + G + + ILQ P +E + + + E + LE AR LL++
Sbjct: 803 SQGWLEYAKMEEDYGRLEKCQKILQLGLKHCPFNESLLIKGIRHEEKMDNLEGARALLSQ 862
Query: 484 ARDMG--GTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHL 541
RD T R M+ ++E GN R + +K P + ++ +LEER
Sbjct: 863 LRDQSIYKTWRAVMEGGLLEARAGNIDVARKIFKYLMKHVPWYGPIYQEAYKLEERCEEY 922
Query: 542 KEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNG-LSKARAVLSVAR--LKNPLNPEI 598
+ A + G + P PLW+S L EK + +G L R + AR + + +I
Sbjct: 923 ERAINIVEKGLFEDPKYGPLWFSALRLYEKTS--HGFLQSTRNTVERARQAVSREVTWKI 980
Query: 599 WLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633
+ + E + N + + K+++ CP + +LW
Sbjct: 981 YFEAAQIEERSKNLTLSRAAYVKSVELCPEN-LLW 1014
Score = 132 (51.5 bits), Expect = 0.00013, P = 0.00013
Identities = 71/290 (24%), Positives = 130/290 (44%)
Query: 199 DEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKS--RVLRMALDEIPDSVR---LWKAL 253
+ A +V KG+ + PK LW A L ++K + + R ++ +V WK
Sbjct: 923 ERAINIVEKGLFEDPKYGPLWFSALRL-YEKTSHGFLQSTRNTVERARQAVSREVTWKIY 981
Query: 254 VEISSEEEA--RILLHRA-----VECCPLDV--ELWLALARLETYG----VARSVLNKAR 300
E + EE + L RA VE CP ++ ++WL +R E +AR ++ +A
Sbjct: 982 FEAAQIEERSKNLTLSRAAYVKSVELCPENLLWKVWLGGSRTELNADNICIARKLVFRAL 1041
Query: 301 KKLP-KERA-IWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEK 358
+++P K R+ + + ++LEE GN + K R I + E +D ++ E+ + E
Sbjct: 1042 EEVPSKLRSLVLLEYSRLEEYAGN---INK--SRRILKMAHVEARLDWKVFL-ESVLLEM 1095
Query: 359 AGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVT 418
++ E K E+ + I S A +W QL + G + L + +KA+
Sbjct: 1096 RANNYEAAIKEAK-ESLK-IHSGA-------GRLWAALIQLNQLKGVKSQL-NVFKKALQ 1145
Query: 419 YFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLE 468
+ P++ +W GA+ ++ AR L+ A P + ++ +LE
Sbjct: 1146 FVPKSGEVWCEGARIALNNNELREARRFLEFAIQFTPQFGDSFIELLRLE 1195
Score = 125 (49.1 bits), Expect = 0.00073, P = 0.00073
Identities = 93/412 (22%), Positives = 178/412 (43%)
Query: 303 LPKERAIWIAAAKLEE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS 361
LP E+ W +L + AN ++ K+ + R + + I + W++ A++ E G
Sbjct: 763 LP-EKVHWRVYLELADLANRQNNL--KLARKFYRKVTSTQPYISQG-WLEYAKMEEDYGR 818
Query: 362 DAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP 421
E+C+K + F+ + + K I +++ G+R +L++ LR Y
Sbjct: 819 -LEKCQKILQLGLKHCPFNESLLI----KGI-RHEEKMDNLEGAR-ALLSQLRDQSIYKT 871
Query: 422 QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLL 481
V+ G + AG++ AR I + +P I+ A+KLE E ERA ++
Sbjct: 872 WRAVM--EGGLLEARAGNIDVARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIV 929
Query: 482 AKA--RD--MG----GTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQ 533
K D G R++ K++ + N ER + + R ++ ++ Q
Sbjct: 930 EKGLFEDPKYGPLWFSALRLYEKTSHGFLQSTRNTVERA--RQAVSREVTW-KIYFEAAQ 986
Query: 534 LEERLGHLKEAKEAYQSGCNQCPNCIPLWYS-LANLEEKRNGLNGLSKARAVL--SVARL 590
+EER +L ++ AY CP + LW L + N N + AR ++ ++ +
Sbjct: 987 IEERSKNLTLSRAAYVKSVELCPENL-LWKVWLGGSRTELNADN-ICIARKLVFRALEEV 1044
Query: 591 KNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE--LIKM-VPHHDRKS 647
+ L + L R E GN ++ + A + ++ E L++M +++
Sbjct: 1045 PSKLRSLVLLEYSRLEEYAGNINKSRRILKMAHVEARLDWKVFLESVLLEMRANNYEAAI 1104
Query: 648 K-GKDALVKSDRDPHVFAAVAKLFWHDRKVDKAR-NWFNKAVSLDPDTGDFW 697
K K++L ++AA+ +L + K K++ N F KA+ P +G+ W
Sbjct: 1105 KEAKESLKIHSGAGRLWAALIQL--NQLKGVKSQLNVFKKALQFVPKSGEVW 1154
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 162 (62.1 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 61/270 (22%), Positives = 115/270 (42%)
Query: 370 GSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLM 429
G I+ AR++F A V SIWL+ A++E + +A+T P+A WL
Sbjct: 100 GEIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLK 159
Query: 430 GAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG 489
+ + + ++P AR I + P E+ W E +E++RAR + + + G
Sbjct: 160 YSYMEEVIENIPGARQIFERWIEWEP-PEQAWQTYINFELRYKEIDRARSVYQRFLHVHG 218
Query: 490 TE-RVWMKSAIVERELGNNAEERGFIEEGLKRF-PSFFNLWLMLG--QLEERLGHLKEAK 545
+ W+K A E G R E+ ++ F N +++ EER + A+
Sbjct: 219 INVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERAR 278
Query: 546 EAYQSGCNQCPN--CIPLWYSLANLEEK---RNGLNG--LSKARAVLSVARLKNPLNPEI 598
++ G + P+ ++ E+K R G+ +SK + +N N +
Sbjct: 279 GIFKYGLDNLPSNRTEEIFKHYTQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDA 338
Query: 599 WLATIRA-ESKHGNKKEADSFIAKALQKCP 627
W +R E++ +++E + +A+ P
Sbjct: 339 WFDYLRLLENEETDREEVEDVYERAIANIP 368
Score = 99 (39.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 45/218 (20%), Positives = 85/218 (38%)
Query: 419 YFPQAEVLWLMGAK-EKWLAGDVPAARDILQEAYATIPNSE----EIWLAAFKLEFENRE 473
Y+ + LW+ A E+ +A D AR + + IP+ ++W+ E +
Sbjct: 378 YWRRYIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLD 437
Query: 474 LERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQ 533
L AR ++ A ++++ +E +L R E+ L+ P W+ +
Sbjct: 438 LNAARKIMGVAIGKCPKDKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAE 497
Query: 534 LEERLGHLKEAKEAYQSGCNQCPNCIP--LWYSLANLEEKRNGLNGLSKARAVLSVARLK 591
LE LG ++ + Q +P LW + + E KAR + L+
Sbjct: 498 LETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYIDFEI---ACEEHEKARDLYETL-LQ 553
Query: 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629
+ ++W++ E GN + A +A Q N+
Sbjct: 554 RTNHIKVWISMAEFEQTIGNFEGARKAFERANQSLENA 591
Score = 83 (34.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 61/243 (25%), Positives = 99/243 (40%)
Query: 189 WLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH--DKANKSR-VLRMALDEIPD 245
W E+ + A+ V + + +S+ +WLQ AE++ + N +R V A+ +P
Sbjct: 95 WEES--IGEIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPR 152
Query: 246 SVRLWK--ALVE--ISSEEEARILLHRAVECCPLDVELWLALARLET-YGV---ARSVLN 297
+++ W + +E I + AR + R +E P + + W E Y ARSV
Sbjct: 153 AMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPE-QAWQTYINFELRYKEIDRARSVYQ 211
Query: 298 KARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAE 357
+ WI AK EE NG E+ + GEE + +T + + E
Sbjct: 212 RFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYF-GEEDI--NETVLVAFALFE 268
Query: 358 KAGSDAEECKKRGSIETARAIFSHACTVFLTKKS--IWLKAAQLEKTHGSR---ESLIAL 412
E K+ E AR IF + + ++ I+ Q EK G R E +I
Sbjct: 269 ------ERQKEH---ERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGERVGIEDVIIS 319
Query: 413 LRK 415
RK
Sbjct: 320 KRK 322
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 160 (61.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 96/448 (21%), Positives = 178/448 (39%)
Query: 199 DEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKS---RVLRMALDEIPDSVRLWKALVE 255
+EA+ V + V +P+ +LW + ++ N + ++L + PD + W ++
Sbjct: 108 NEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQ-QAWLCFIK 166
Query: 256 IS---SEEE-ARILLHRAVECCPLDVELWLALARLET-YG---VARSVLNKARKKLPK-E 306
+E E AR + R V C P V ++ A+ E +G +A V +A+K+L E
Sbjct: 167 FELKYNEIECARSIYERFVLCHP-KVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDE 225
Query: 307 RA--IWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAE 364
A +++A A+ EE + +I + L + V ++ KE E A
Sbjct: 226 EAEILFVAFAEFEEQY--KFALDQIPKGRAENLYSKFVAFEKQNGDKEG--IEDAIIGKR 281
Query: 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE 424
C+ + + W +LE+T G+++ + + +AV P E
Sbjct: 282 RCQYEDEVRKNPLNYDS-----------WFDFVRLEETVGNKDRIREIYERAVANVPPPE 330
Query: 425 V-----------LWLMGAK-EKWLAGDVPAARDILQEAYATIPNSE----EIWLAAFKLE 468
LW+ A + + DV + RD+ + IP+S+ +IWL A + E
Sbjct: 331 AQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHE 390
Query: 469 FENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLW 528
L AR +L A ++++ K +E +L N R E L+ P W
Sbjct: 391 IRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAW 450
Query: 529 LMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP--LWYSLANLEEKRNGLNGLSKARAVLS 586
+ E L + + ++ +Q +P LW + + E L + RA+
Sbjct: 451 RKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELE---RTRALYE 507
Query: 587 VARLKNPLNPEIWLATIRAESKHGNKKE 614
L + ++W+ + E+ KE
Sbjct: 508 -RLLDRTKHCKVWVDFAKFEASAAEHKE 534
Score = 133 (51.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 72/302 (23%), Positives = 115/302 (38%)
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAY 451
+W+K A E + S + +AV+ P+ + LW + G++ AR IL+
Sbjct: 93 VWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWI 152
Query: 452 ATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEER 511
P+ ++ WL K E + E+E AR + + +++ A E + G
Sbjct: 153 HCSPD-QQAWLCFIKFELKYNEIECARSIYERFVLCHPKVSAYIRYAKFEMKHGQ----- 206
Query: 512 GFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEE 570
+E +K F + E E +E Y+ +Q P YS E
Sbjct: 207 --VELAMKVFERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFVAFE 264
Query: 571 KRNG-LNGLS-----KARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQ 624
K+NG G+ K R KNPLN + W +R E GNK +A+
Sbjct: 265 KQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVA 324
Query: 625 KCP----NSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKAR 680
P W I + ++ ++ V+S RD V+ A KL H K A+
Sbjct: 325 NVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRD--VYRACLKLIPHS-KFSFAK 381
Query: 681 NW 682
W
Sbjct: 382 IW 383
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 153 (58.9 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 67/325 (20%), Positives = 130/325 (40%)
Query: 372 IETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGA 431
++ +R+I+ A V ++WLK A++E + + +A+T P+ W
Sbjct: 96 VQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYT 155
Query: 432 KEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTE 491
+ + G++ R + + P E+ W + E +E+++AR + KA M E
Sbjct: 156 YMEEMLGNIAGCRQVFERWMEWEPE-EQAWHSYINFELRYKEVDKARSIYEKALVMVHPE 214
Query: 492 -RVWMKSAIVERELGNNAEERGFIEEGLKRFPS---FFNLWLMLGQLEERLGHLKEAKEA 547
+ W+K A E + G A R E ++ F NL++ + EE+ + +
Sbjct: 215 VKNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVI 274
Query: 548 YQSGCNQCPN--CIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKNPLNPEIWL 600
Y+ ++ P L+ + E++ R G+ + SK R NP N + W
Sbjct: 275 YKYALDRIPKQQAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEEVKANPHNYDAWF 334
Query: 601 ATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHDRKSKGKDALVKS-D 657
+R + +A+ P W I + ++ + ++ VK +
Sbjct: 335 DYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYIYLWINY---ALYEELEVKDPE 391
Query: 658 RDPHVFAAVAKLFWHDRKVDKARNW 682
R V+ A +L H +K A+ W
Sbjct: 392 RTRQVYKACLELIPH-KKFTFAKIW 415
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 157 (60.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 66/304 (21%), Positives = 124/304 (40%)
Query: 334 IRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIW 393
+R Q E ++ R+ K A I K + EE +K + AR++F + ++W
Sbjct: 58 LRKRQQYESLLGRNR--KTAAIYIKYAA-WEESQK--DLTRARSVFERFLDIDHRIPTVW 112
Query: 394 LKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT 453
+K A++E + + + +AV P+ LW + + G+ PAAR I +
Sbjct: 113 IKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQW 172
Query: 454 IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGF 513
P + W + K E + E R++ K + + W+K E LGN R
Sbjct: 173 KPEPQA-WNSYLKFEQRLKLFENTRLIFEKYILVHPYIKTWIKYTKFEERLGNIENARTI 231
Query: 514 IEEGLKRFPSFFN---LWLMLGQLEERLGHLKEAKEAYQSGCNQCPN--CIPLWYSLANL 568
+ ++ N L++ + EE+ ++ A+ Y+ + P L+ + N
Sbjct: 232 FQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNF 291
Query: 569 EEK---RNGLNG--LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKAL 623
E++ R G+ L K R KN N +IW ++ E +G ++ +++
Sbjct: 292 EKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSI 351
Query: 624 QKCP 627
P
Sbjct: 352 GNLP 355
Score = 144 (55.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 71/321 (22%), Positives = 128/321 (39%)
Query: 260 EEARILLHRAVECCPLDVELWLALARLET-YGV---ARSVLNKARKKLPKE---RAIWIA 312
E R++ + + P ++ W+ + E G AR++ +A + L ++ ++IA
Sbjct: 193 ENTRLIFEKYILVHPY-IKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIA 251
Query: 313 AAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK-EAEIAEKAG-SDAEECKKRG 370
AK EE I + I + DT+ E + ++ G D KKR
Sbjct: 252 FAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRF 311
Query: 371 SIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE------ 424
E I ++ IW ++E+ +G E + +++ P
Sbjct: 312 QYE--EEIKKNS-----KNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWK 364
Query: 425 ---VLWLMGAK-EKWLAGDVPAARDILQEAYATIPNSE----EIWLAAFKLEFENRELER 476
LW+ A E+ ++ D+ AR + E IP+ E +IW+ E L++
Sbjct: 365 RYIYLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDK 424
Query: 477 ARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEE 536
AR++ +A +++ + +E ELGN R E+ L+ P + W QLE
Sbjct: 425 ARLIYGQAIGRNPKSKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLET 484
Query: 537 RLGHLKEAKEAYQSGCNQCPN 557
LG A+ ++ Q PN
Sbjct: 485 ELGETVRARAIFELAIQQ-PN 504
Score = 43 (20.2 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 677 DKARNWFNKAVSLDPDTGDFWALY 700
D+ R + K + + PD D W +
Sbjct: 456 DRVRTLYEKYLEIMPDNCDAWCKF 479
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 150 (57.9 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 73/328 (22%), Positives = 130/328 (39%)
Query: 375 ARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEK 434
AR++F A V T +WLK + E + + L +AVT P+ + LW +
Sbjct: 89 ARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYME 148
Query: 435 WLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVW 494
+ G++ R + + P+ E W++ ++E E ERAR + + + W
Sbjct: 149 EMLGNITGCRQVFERWLKWEPD-ENCWMSYIRMERRYHENERARGIYERFVVVHPEVTNW 207
Query: 495 MKSAIVERELGNNAEERGFIEEGLKRF-PSFFN--LWLMLGQLEERLGHLKEAKEAYQSG 551
++ A E E GN A R + F N ++ + E R + A+ ++
Sbjct: 208 LRWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYA 267
Query: 552 CNQCPNC--IPLWYSLANLEEKRNGLNGLSKARAVLSVARLK-------NPLNPEIWLAT 602
+ P + L+ + E K+ G + L VL RL+ +P + + WL
Sbjct: 268 IDFMPRSKSMELYKEYTHFE-KQFG-DHLGVESTVLDKRRLQYEKLLKDSPYDYDTWLDL 325
Query: 603 IRAESKHGNKKEADSFIAKALQKCPN--SGILWAELIKMVPHHDRKSKGKDALVKS-DRD 659
++ E G+ KA+ K P W + + ++ ++ VK DR
Sbjct: 326 LKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNY---CLFEEIDVKDVDRA 382
Query: 660 PHVFAAVAKLFWHDRKVDKARNWFNKAV 687
V+ KL H +K A+ W A+
Sbjct: 383 RKVYQEALKLIPH-KKFTFAKLWLMYAM 409
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 146 (56.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 69/333 (20%), Positives = 129/333 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 132 EESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 189
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
W + + G++ AR + + P E+ W + E +E++RAR + +
Sbjct: 190 NQFWYKYTYMEEMLGNIAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYER 248
Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGH 540
+ + W+K A E + G A R E ++ F +L++ + EE
Sbjct: 249 FVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKE 308
Query: 541 LKEAKEAYQSGCNQCPN--CIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKNP 593
+ + Y+ ++ L+ + E+K R G+ + SK R NP
Sbjct: 309 FERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANP 368
Query: 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHD--RKSKG 649
N + W +R + +A+ P W I + ++ + +
Sbjct: 369 HNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEA 428
Query: 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682
KD +R V+ A +L H +K A+ W
Sbjct: 429 KDP----ERTRQVYQASLELIPH-KKFTFAKMW 456
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 143 (55.4 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 70/333 (21%), Positives = 127/333 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 91 EESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 148
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
W + + G+V AR + + P E+ W + E +E+ERAR + +
Sbjct: 149 NQFWYKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYER 207
Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGH 540
+ + W+K A E + A R E ++ F +L++ + EE
Sbjct: 208 FVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKE 267
Query: 541 LKEAKEAYQSGCNQCPN--CIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKNP 593
+ + Y+ ++ L+ + E+K R G+ + SK R NP
Sbjct: 268 FERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANP 327
Query: 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHD--RKSKG 649
N + W +R +A+ P W I + ++ + +
Sbjct: 328 HNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEA 387
Query: 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682
KD +R V+ A +L H +K A+ W
Sbjct: 388 KDP----ERTRQVYQASLELIPH-KKFTFAKMW 415
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 143 (55.4 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 70/333 (21%), Positives = 127/333 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 91 EESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 148
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
W + + G+V AR + + P E+ W + E +E+ERAR + +
Sbjct: 149 NQFWYKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVERARTIYER 207
Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGH 540
+ + W+K A E + A R E ++ F +L++ + EE
Sbjct: 208 FVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKE 267
Query: 541 LKEAKEAYQSGCNQCPN--CIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKNP 593
+ + Y+ ++ L+ + E+K R G+ + SK R NP
Sbjct: 268 FERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANP 327
Query: 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHD--RKSKG 649
N + W +R +A+ P W I + ++ + +
Sbjct: 328 HNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEA 387
Query: 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682
KD +R V+ A +L H +K A+ W
Sbjct: 388 KDP----ERTRQVYQASLELIPH-KKFTFAKMW 415
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 143 (55.4 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 70/334 (20%), Positives = 132/334 (39%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 107 EESLKE--IQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 164
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML-LA 482
W + + G+V +R + + P E+ W + E +E++RAR + +A
Sbjct: 165 NQFWYKYTYMEEMLGNVAGSRQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYIA 223
Query: 483 KARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLG 539
+ + W+K A E + A R E ++ F +L++ + EE
Sbjct: 224 LLVIVHPDVKNWIKYARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQK 283
Query: 540 HLKEAKEAYQSGCNQCP--NCIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKN 592
+ + Y+ ++ P + L+ + E+K R G+ + SK R N
Sbjct: 284 EFERVRVIYKYALDRIPKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKAN 343
Query: 593 PLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHD--RKSK 648
P N + W +R + + +A+ P W I + ++ + +
Sbjct: 344 PHNYDAWFDYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEELE 403
Query: 649 GKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682
KD +R V+ A +L H +K A+ W
Sbjct: 404 AKDP----ERTRQVYQACIELLPH-KKFTFAKIW 432
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 141 (54.7 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 69/333 (20%), Positives = 129/333 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 240 EESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 297
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
W + + G+V AR + + P E+ W + E +E++RAR + +
Sbjct: 298 NQFWYKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYER 356
Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGH 540
+ + W+K A E + A R E ++ F +L++ + EE
Sbjct: 357 FVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKE 416
Query: 541 LKEAKEAYQSGCNQCP--NCIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKNP 593
+ + Y+ ++ + L+ + E+K R G+ + SK R NP
Sbjct: 417 FERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANP 476
Query: 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHD--RKSKG 649
N + W +R + +A+ P W I + ++ + +
Sbjct: 477 HNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEA 536
Query: 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682
KD +R V+ A +L H +K A+ W
Sbjct: 537 KDP----ERTRQVYQASLELIPH-KKFTFAKMW 564
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 141 (54.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 69/333 (20%), Positives = 129/333 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 252 EESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 309
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
W + + G+V AR + + P E+ W + E +E++RAR + +
Sbjct: 310 NQFWYKYTYMEEMLGNVAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYER 368
Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGH 540
+ + W+K A E + A R E ++ F +L++ + EE
Sbjct: 369 FVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKE 428
Query: 541 LKEAKEAYQSGCNQCP--NCIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKNP 593
+ + Y+ ++ + L+ + E+K R G+ + SK R NP
Sbjct: 429 FERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANP 488
Query: 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELIKMVPHHD--RKSKG 649
N + W +R + +A+ P W I + ++ + +
Sbjct: 489 HNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEA 548
Query: 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682
KD +R V+ A +L H +K A+ W
Sbjct: 549 KDP----ERTRQVYQASLELIPH-KKFTFAKMW 576
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 137 (53.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 59/283 (20%), Positives = 108/283 (38%)
Query: 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVL 426
+++ I+ AR+I+ A ++WLK A++E + L +AVT P+
Sbjct: 87 EQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQF 146
Query: 427 WLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARD 486
W + + +V AR + + P E+ W E +E++RAR + +
Sbjct: 147 WYKYTYMEEMLENVAGARQVFERWMEWQPE-EQAWQTYVNFELRYKEIDRAREIYERFVY 205
Query: 487 MGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGHLKE 543
+ + W+K A E G R E ++ F + L++ + EE
Sbjct: 206 VHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDR 265
Query: 544 AKEAYQSGCNQCPN--CIPLWYSLANLEEK---RNGLNGL--SKARAVLSVARLKNPLNP 596
A+ Y+ + P L+ + E+K R G+ + SK + NP N
Sbjct: 266 ARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNY 325
Query: 597 EIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAELI 637
+ W +R G++ + +A+ P N W I
Sbjct: 326 DAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYI 368
Score = 136 (52.9 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 83/378 (21%), Positives = 150/378 (39%)
Query: 260 EEARILLHRAVECCPLDVELWLALARLE-TYGV---ARSVLNKARKKLPK---ERAIWIA 312
+ AR + R V P DV+ W+ AR E ++G +R V +A + E ++IA
Sbjct: 194 DRAREIYERFVYVHP-DVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIA 252
Query: 313 AAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMK-EAEIAEKAGSDAEECKKRGS 371
A+ EE I + + L + + K E + ++AG + KR
Sbjct: 253 FARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKR-K 311
Query: 372 IETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE------- 424
+ + + ++ T W +L + G R+ + +A++ P A
Sbjct: 312 YQYEQEVAANP-----TNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRR 366
Query: 425 --VLWLMGAK-EKWLAGDVPAARDILQEAYATIPNSE----EIWLAAFKLEFENRELERA 477
LW+ A E+ A D R I + IP+ + ++WL + E +EL+RA
Sbjct: 367 YIYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRA 426
Query: 478 RMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER 537
R L A M ++++ +E +L R E+ L+ P W+ +LE
Sbjct: 427 RKALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENL 486
Query: 538 LGHLKEAKEAYQSGCNQCPNCIP--LWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595
LG A+ ++ Q +P LW + + E L AR + L+ +
Sbjct: 487 LGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEV---ALGETELARQLYE-RLLERTQH 542
Query: 596 PEIWLATIRAES--KHGN 611
++W++ + E HG+
Sbjct: 543 VKVWMSFAKFEMGLSHGD 560
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 135 (52.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 42/185 (22%), Positives = 81/185 (43%)
Query: 461 WLAAFKLEFENRELERARMLLAKARDMGGTE-RVWMKSAIVERELGNNAEERGFIEEGLK 519
W+ + E E ++ RAR + +A + + +W++ E ++ R + +
Sbjct: 68 WIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAIS 127
Query: 520 RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLS 579
P LW +EE L +++ + Y C+ P + W S + E ++ NG+
Sbjct: 128 TLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPG-VNAWNSFVDFEIRQKNWNGV- 185
Query: 580 KARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGIL--WA--E 635
R + S + +P + WL +R E++HGN + S + A+ N L W+ E
Sbjct: 186 --REIYSKYVMAHP-QMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDME 242
Query: 636 LIKMV 640
+ K+V
Sbjct: 243 VAKLV 247
Score = 49 (22.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 632 LWAELIKMVPHHDRKSKGKDALVKS-DRDPHV--FAAVAKLFWHDRKVDKARNWFNKAVS 688
+W K + HD K + L K+ P F +L ++ D+ R + K +
Sbjct: 406 IWLMYAKFLIRHDDVPKARKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIE 465
Query: 689 LDPDTGDFWALY 700
P W+ Y
Sbjct: 466 FQPSDLQIWSQY 477
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 141 (54.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 48/206 (23%), Positives = 93/206 (45%)
Query: 220 LQAAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC- 273
LQA E++ +A R L+ ++ E + + +W AL+ + S+E + RAV+
Sbjct: 1621 LQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNE 1680
Query: 274 PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331
PL V L LA + E Y A + N+ K+ +E+A+WI ++++
Sbjct: 1681 PLKVFLHLADIYTKSEKYKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQ 1740
Query: 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS 391
R + L +E V D +K A++ + G +E A+AIF + + + +
Sbjct: 1741 RALECLPAKEHV---DVIVKFAQLEFQLGD----------VERAKAIFENTLSTYPKRTD 1787
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAV 417
+W + HGS+ ++ + + +
Sbjct: 1788 VWSVYIDMTIKHGSQTAVRDIFERVI 1813
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 140 (54.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 50/206 (24%), Positives = 95/206 (46%)
Query: 220 LQAAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC- 273
LQA E++ +A R L+ ++ E + + +W AL+ + S+E + RAV+
Sbjct: 1630 LQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNE 1689
Query: 274 PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331
PL V L LA A+ E + A + N+ K+ +E+A+WI + ++++
Sbjct: 1690 PLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQ 1749
Query: 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS 391
R + L +E V D K A++ + G DAE A+AIF + + + +
Sbjct: 1750 RALECLPSKEHV---DVIAKFAQLEFQLG-DAER---------AKAIFENTLSTYPKRTD 1796
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAV 417
+W + HGS++ + + + +
Sbjct: 1797 VWSVYIDMTIKHGSQKDVRDIFERVI 1822
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 140 (54.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 48/206 (23%), Positives = 93/206 (45%)
Query: 220 LQAAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC- 273
LQA E++ +A R L+ ++ E + + +W AL+ + S+E + RAV+
Sbjct: 1634 LQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLAKVFERAVQYNE 1693
Query: 274 PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331
PL V L LA + E + A + N+ K+ +E+A+WI ++++
Sbjct: 1694 PLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFVLGRSQAGASHRVLQ 1753
Query: 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS 391
R + L +E V D +K A++ + G +E A+AIF + T + +
Sbjct: 1754 RALECLPTKEHV---DVIVKFAQLEFQLGD----------VERAKAIFENTLTTYPKRTD 1800
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAV 417
+W + HGS++ + + + +
Sbjct: 1801 VWSVYIDMTIKHGSQKEVRDIFERVI 1826
>TAIR|locus:2121214 [details] [associations]
symbol:BGAL14 "beta-galactosidase 14" species:3702
"Arabidopsis thaliana" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds"
evidence=IEA] [GO:0004565 "beta-galactosidase activity"
evidence=ISS] [GO:0005576 "extracellular region" evidence=ISM]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005975 "carbohydrate
metabolic process" evidence=IEA] [GO:0030246 "carbohydrate binding"
evidence=IEA] [GO:0043169 "cation binding" evidence=IEA]
InterPro:IPR000922 InterPro:IPR001944 InterPro:IPR010491
InterPro:IPR013781 InterPro:IPR019801 Pfam:PF01301 Pfam:PF02140
Pfam:PF06424 PRINTS:PR00742 PROSITE:PS01182 PROSITE:PS50228
GO:GO:0005634 EMBL:CP002687 GO:GO:0043169 Gene3D:3.20.20.80
InterPro:IPR017853 SUPFAM:SSF51445 GO:GO:0005975 GO:GO:0030246
InterPro:IPR008979 SUPFAM:SSF49785 GO:GO:0000398 GO:GO:0004565
PANTHER:PTHR23421 IPI:IPI00938708 RefSeq:NP_001154292.1
UniGene:At.70242 ProteinModelPortal:F4JUE3 SMR:F4JUE3 PRIDE:F4JUE3
EnsemblPlants:AT4G38590.2 GeneID:830016 KEGG:ath:AT4G38590
OMA:WINGNSI ArrayExpress:F4JUE3 Uniprot:F4JUE3
Length = 1052
Score = 136 (52.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 1 ARLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYS 46
A+L++EI+NYR NP + +FVDL KL T+ EW+ IPEIG+YS
Sbjct: 1003 AKLKQEIENYRASNPKVSGQFVDLTRKLHTLSEDEWDSIPEIGNYS 1048
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 57/279 (20%), Positives = 108/279 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 196 EESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 253
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML--L 481
W + + G++ AR + + P E+ W + E +E++RAR +
Sbjct: 254 NQFWYKYTYMEEMLGNIAGARQVFERWMEWQPE-EQAWHSYINFELRYKEVDRARTIYYF 312
Query: 482 AKARDMGGTE---RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLE 535
+ ++ + W+K A E + G A R E ++ F +L++ + E
Sbjct: 313 LNSPELVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFE 372
Query: 536 ERLGHLKEAKEAYQSGCNQCPN--CIPLWYSLANLEEK---RNGLNGL--SKARAVLSVA 588
E + + Y+ ++ L+ + E+K R G+ + SK R
Sbjct: 373 ENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE 432
Query: 589 RLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627
NP N + W +R + +A+ P
Sbjct: 433 VKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVP 471
Score = 93 (37.8 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 44/180 (24%), Positives = 77/180 (42%)
Query: 250 WK-ALVEISSEEEARILLHRAVECCPLDVELWLALARLET----YGVARSVLNKARKKLP 304
W+ +L EI + AR + RA++ ++ LWL A +E AR++ ++A LP
Sbjct: 195 WEESLKEI---QRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP 251
Query: 305 KERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAE 364
+ W +EE GN + ++ ER + Q EE W
Sbjct: 252 RVNQFWYKYTYMEEMLGNIAGARQVFERWME-WQPEE-----QAWHSYINF--------- 296
Query: 365 ECKKRGSIETARAI--FSHACTVFLTKKSI--WLKAAQLEKTHGSRESLIALLRKAVTYF 420
E + + ++ AR I F ++ + L + W+K A+ E+ HG + +AV +F
Sbjct: 297 ELRYK-EVDRARTIYYFLNSPELVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFF 355
Score = 91 (37.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 31/113 (27%), Positives = 50/113 (44%)
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT--IPNSEEIWLAAFKLEF 469
L K + + P+ W+ A+ + + GD+ AR I + A + + E +W + E
Sbjct: 577 LYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEI 636
Query: 470 ENRELERARMLLAKARDMGGTERVWMKSAIVE---RELGNNAEERGFIEEGLK 519
E E ER R L + +VW+ A E R+ G+ A+ R EE K
Sbjct: 637 EQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEANK 689
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 138 (53.6 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 50/206 (24%), Positives = 94/206 (45%)
Query: 220 LQAAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC- 273
LQA E++ +A R L+ ++ E + + +W AL+ + S+E + RAV+
Sbjct: 1629 LQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNE 1688
Query: 274 PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331
PL V L LA + E + A + N+ K+ +E+A+WI G ++++
Sbjct: 1689 PLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQ 1748
Query: 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS 391
R + L +E V D K A++ + G DAE A+AIF + + + +
Sbjct: 1749 RALECLPNKEHV---DVIAKFAQLEFQLG-DAER---------AKAIFENTLSTYPKRTD 1795
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAV 417
+W + HGS++ + + + +
Sbjct: 1796 VWSVYIDMTIKHGSQKEVRDIFERVI 1821
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 132 (51.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 57/278 (20%), Positives = 107/278 (38%)
Query: 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423
EE K I+ AR+I+ A V ++WLK A++E + + +A+T P+
Sbjct: 175 EESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRV 232
Query: 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483
W + + G++ AR + + P E+ W + E +E++RAR + +
Sbjct: 233 NQFWYKYTYMEEMLGNIAGARQVFERWMEWRPE-EQAWHSYINFELRYKEVDRARTIYER 291
Query: 484 ARD----MGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEE 536
+ + W+K A E + G A R E ++ F +L++ + EE
Sbjct: 292 YIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEE 351
Query: 537 RLGHLKEAKEAYQSGCNQCPN--CIPLWYSLANLEEK---RNGLNGL--SKARAVLSVAR 589
+ + Y+ ++ L+ + E+K R G+ + SK R
Sbjct: 352 NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEV 411
Query: 590 LKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627
NP N + W +R + +A+ P
Sbjct: 412 KANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVP 449
Score = 93 (37.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 44/179 (24%), Positives = 76/179 (42%)
Query: 250 WK-ALVEISSEEEARILLHRAVECCPLDVELWLALARLET----YGVARSVLNKARKKLP 304
W+ +L EI + AR + RA++ ++ LWL A +E AR++ ++A LP
Sbjct: 174 WEESLKEI---QRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLP 230
Query: 305 KERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAE 364
+ W +EE GN + ++ ER + W E E A + + E
Sbjct: 231 RVNQFWYKYTYMEEMLGNIAGARQVFERWME-------------WRPE-EQAWHSYINFE 276
Query: 365 ECKKRGSIETARAIFS---HACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYF 420
K ++ AR I+ H+ + W+K A+ E+ HG + +AV +F
Sbjct: 277 LRYKE--VDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFF 333
Score = 86 (35.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/113 (26%), Positives = 47/113 (41%)
Query: 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT--IPNSEEIWLAAFKLEF 469
L K + + P+ W+ A+ + + GD+ AR I + A + + E +W + E
Sbjct: 555 LYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEI 614
Query: 470 ENRELERARMLLAKARDMGGTERVWMKSAIVERELGNN---AEERGFIEEGLK 519
E E ER R L + +VW+ A E G A+ R EE K
Sbjct: 615 EQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLAKCRQIYEEANK 667
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 136 (52.9 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 50/206 (24%), Positives = 94/206 (45%)
Query: 220 LQAAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC- 273
LQA E++ +A R L+ ++ E + + +W AL+ + S+E + RAV+
Sbjct: 1618 LQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNE 1677
Query: 274 PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331
PL V L LA + E + A + N+ K+ +E+A+WI G ++++
Sbjct: 1678 PLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQ 1737
Query: 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS 391
R + L +E V D K A++ + G DAE A+AIF + + + +
Sbjct: 1738 RALECLPKKEHV---DVIAKFAQLEFQLG-DAER---------AKAIFENTLSTYPKRTD 1784
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAV 417
+W + HGS++ + + + +
Sbjct: 1785 VWSVYIDMIIKHGSQKEVRDIFERVI 1810
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 136 (52.9 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 50/206 (24%), Positives = 94/206 (45%)
Query: 220 LQAAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECC- 273
LQA E++ +A R L+ ++ E + + +W AL+ + S+E + RAV+
Sbjct: 1635 LQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNE 1694
Query: 274 PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331
PL V L LA + E + A + N+ K+ +E+A+WI G ++++
Sbjct: 1695 PLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQ 1754
Query: 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS 391
R + L +E V D K A++ + G DAE A+AIF + + + +
Sbjct: 1755 RALECLPKKEHV---DVIAKFAQLEFQLG-DAER---------AKAIFENTLSTYPKRTD 1801
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAV 417
+W + HGS++ + + + +
Sbjct: 1802 VWSVYIDMIIKHGSQKEVRDIFERVI 1827
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 64/283 (22%), Positives = 109/283 (38%)
Query: 361 SDAEECKKRGSIETARAIFSHACT-VFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY 419
+D EE +K + AR+++ A ++WLK A+ E + S + +AV
Sbjct: 78 ADWEESQK--DHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKI 135
Query: 420 FPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARM 479
P+ + W + + G++ AR I + P+ ++ WL K E E+ER+R
Sbjct: 136 LPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPD-QQAWLCFIKFELRYNEIERSRS 194
Query: 480 LLA-------KARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNL-WLML 531
+ KA + MK++ V L ER E LK + ++
Sbjct: 195 IYERFVLCHPKASSFIRYAKFEMKNSQVS--LARIVYERAI--EMLKDVEEEAEMIFVAF 250
Query: 532 GQLEERLGHLKEAKEAYQSGCNQCPN--CIPLWYSLANLEEKRNGLNGLSKA---RAVLS 586
+ EE ++ A+ Y+ + P L+ E++ G+ A R L
Sbjct: 251 AEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQ 310
Query: 587 VAR--LKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627
KNPLN + W I E G+K +A+ P
Sbjct: 311 YEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIANVP 353
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 144 (55.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 55/220 (25%), Positives = 98/220 (44%)
Query: 213 PKSVRLWLQ-------AAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEE 260
P S LWLQ A E++ +A R L+ ++ E + + +W AL+ + S+E
Sbjct: 1619 PSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQE 1678
Query: 261 EARILLHRAVECC-PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLE 317
+ RAV+ PL V L LA + E + A + N+ K+ +E+A+W+
Sbjct: 1679 SLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFL 1738
Query: 318 EANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARA 377
G ++++R + L +E V D K A++ + G DAE ARA
Sbjct: 1739 LRRGKAEASHRVMQRALECLPKKEHV---DVIAKFAQLEFQLG-DAER---------ARA 1785
Query: 378 IFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAV 417
IF +++ + +W + HGS++ A+ + +
Sbjct: 1786 IFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVI 1825
Score = 40 (19.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 57 FVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGK 104
+VP P+S+ + + V+ +PS + +++D GEG+ +
Sbjct: 578 YVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQ 625
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 102 RGKILTLKLDGI----SDSVTGLT-VVDLSGYLTRMNDLKITTNSEL--RDIL---KARK 151
+GK+LT+K G+ + GL + L+ L + + K E+ R +L KA+K
Sbjct: 457 KGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKK 516
Query: 152 IVRAIQ 157
++ ++
Sbjct: 517 LMMTLK 522
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 144 (55.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 55/220 (25%), Positives = 98/220 (44%)
Query: 213 PKSVRLWLQ-------AAELDHDKANKSRVLR-MALDEIPDSVRLWKALVEIS----SEE 260
P S LWLQ A E++ +A R L+ ++ E + + +W AL+ + S+E
Sbjct: 1619 PSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQE 1678
Query: 261 EARILLHRAVECC-PLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLE 317
+ RAV+ PL V L LA + E + A + N+ K+ +E+A+W+
Sbjct: 1679 SLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFL 1738
Query: 318 EANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARA 377
G ++++R + L +E V D K A++ + G DAE ARA
Sbjct: 1739 LRRGKAEASHRVMQRALECLPKKEHV---DVIAKFAQLEFQLG-DAER---------ARA 1785
Query: 378 IFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAV 417
IF +++ + +W + HGS++ A+ + +
Sbjct: 1786 IFESTLSIYPKRTDVWSVYIDMIIKHGSQKEARAIFERVI 1825
Score = 40 (19.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 57 FVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGK 104
+VP P+S+ + + V+ +PS + +++D GEG+ +
Sbjct: 578 YVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQ 625
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 102 RGKILTLKLDGI----SDSVTGLT-VVDLSGYLTRMNDLKITTNSEL--RDIL---KARK 151
+GK+LT+K G+ + GL + L+ L + + K E+ R +L KA+K
Sbjct: 457 KGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLLCDPKAKK 516
Query: 152 IVRAIQ 157
++ ++
Sbjct: 517 LMMTLK 522
>UNIPROTKB|Q60A19 [details] [associations]
symbol:MCA1053 "TPR domain protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 EMBL:AE017282
GenomeReviews:AE017282_GR RefSeq:YP_113528.1
ProteinModelPortal:Q60A19 GeneID:3104049 KEGG:mca:MCA1053
PATRIC:22605914 OMA:AGRYDDS Uniprot:Q60A19
Length = 586
Score = 125 (49.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 101/441 (22%), Positives = 188/441 (42%)
Query: 277 VELWLALARLETYG-VARSVLNKAR--KKLPK---ERAIWIAAAKLEEANGNTSMVGKII 330
+E +L ARL G +A + A KK P+ A+W+ A A +
Sbjct: 81 LEHYLQAARLSRDGRLAERAMQIALFIKKYPEAVESVALWLKAEP-RHAGARRMATLLYL 139
Query: 331 ERGIR--ALQGEEVVI---DRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTV 385
+ G R A+ +V++ D D E+ + G+ E ++ + E A+
Sbjct: 140 KEGRRDEAVTQMKVLLTLPDADLENTLIELVKVLGN---EVPRQDATEFMDALLR----A 192
Query: 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARD 445
F + AA L G + ++ +A+ P ++ A+ GD A D
Sbjct: 193 FPAMADLHFAAALLAANQGEFQQALSETEEALKLHPDWGRARVLQAQVMAQMGDSATAGD 252
Query: 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK--ARDMGGTE-RVWMKSAIVER 502
++Q A P++ + L + ++ ++E AR L + A++ G + R + A+++
Sbjct: 253 LIQRALKRDPDNARLRLIYSQFLIKSGDIEGARRELERIVAKEPGNQDARFGLGLALID- 311
Query: 503 ELGN-NAEERGF--IEEGLK-RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC 558
LG +A R F + K R ++F LG ++ R G L EA + + P
Sbjct: 312 -LGRLDAARREFAALAASEKWRVQAYF----YLGLIDARKGRLNEALDWFDR-VTTGPTE 365
Query: 559 IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE--SKHGNKKEAD 616
+ N L L++AR L+ R + P N + L + AE SK+ + ++A
Sbjct: 366 FD---ARVNGITVLISLGRLTEARTRLADIRRRFP-NESVRLYLLEAELLSKNRDYEDAF 421
Query: 617 SFIAKALQKCPN-SGILWAELI--KMVPHHD-RKSKGKDALVKSDRDPHVFAAVA-KLFW 671
+ + AL + P S +L+A + + + D ++ + L KS DP+ A+ L
Sbjct: 422 NLLTDALGENPGQSDLLYARALVAENLGRFDVLEADLRQVLEKSPDDPNALNALGYTLVE 481
Query: 672 HDRKVDKARNWFNKAVSLDPD 692
++D+A+ + ++A+ L PD
Sbjct: 482 RGERLDEAKGYLDRAIRLKPD 502
Score = 47 (21.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 219 WLQAAELDHDKANKSRVLRMAL-----DEIPDSVRLW 250
+LQAA L D R +++AL E +SV LW
Sbjct: 84 YLQAARLSRDGRLAERAMQIALFIKKYPEAVESVALW 120
>RGD|1306211 [details] [associations]
symbol:Ttc7a "tetratricopeptide repeat domain 7A" species:10116
"Rattus norvegicus" [GO:0006879 "cellular iron ion homeostasis"
evidence=ISO] [GO:0030097 "hemopoiesis" evidence=ISO]
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028 RGD:1306211
GO:GO:0006879 Gene3D:1.25.40.10 GO:GO:0030097 InterPro:IPR013105
Pfam:PF07719 HOVERGEN:HBG059763 EMBL:BC098811 IPI:IPI00914258
UniGene:Rn.16768 ProteinModelPortal:Q4G027 PhosphoSite:Q4G027
UCSC:RGD:1306211 InParanoid:Q4G027 ArrayExpress:Q4G027
Genevestigator:Q4G027 Uniprot:Q4G027
Length = 260
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 49/176 (27%), Positives = 85/176 (48%)
Query: 462 LAAFKLEFENRELERARMLLAKA-RDMGGT-ERVWMKSAIVERELGNNAEERGF-IEEGL 518
+AA +LE EL +L + + T E++W+++A + E +E GF I+E
Sbjct: 82 IAASRLEEAMSELTITTSVLKQGPMQLWTTLEQIWLQAAELFMEQ-RQLKEAGFCIQEAA 140
Query: 519 KRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGL 578
FP+ ++ M G+L E G +EAK+ Y+ P+ + + +SL + + L
Sbjct: 141 GLFPTSHSVLYMRGRLAEVKGSFEEAKQLYKEALTVNPDGVCIMHSLGLILSR---LGHK 197
Query: 579 SKARAVLSVARLKNPLNPEIW--LATIRAESKHGNKKEADSFIAKALQKCPNSGIL 632
S A+ VL A + + E W L + + H N+ AD F+ AL+ +S +L
Sbjct: 198 SLAQKVLRDAVERQSTHHEAWQGLGEVLQDQGH-NEAAADCFLT-ALELEASSPVL 251
>TAIR|locus:2184236 [details] [associations]
symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
Uniprot:Q9LKU3
Length = 917
Score = 125 (49.1 bits), Expect = 0.00048, P = 0.00048
Identities = 73/318 (22%), Positives = 142/318 (44%)
Query: 218 LWLQAAELD--HDKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPL 275
+W + AE++ H + L +P +V + + V E ++ LHR++
Sbjct: 463 VWCEWAEMELRHKNFKGALELMRRATAVP-TVEV-RRRVAADGNEPVQMKLHRSLRLWSF 520
Query: 276 DVELWLALARLETYGVARSVLNKARK-KLPKERAIWIAAAKLEEANGNTSMVGKIIERGI 334
V+L +L LE+ R+V K ++ + I A LEE N K+ ERG+
Sbjct: 521 YVDLEESLGTLES---TRAVYEKILDLRIATPQIIMNYAFLLEE-NKYFEDAFKVYERGV 576
Query: 335 RALQGEEVVIDRDTWMKE-AEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTK--KS 391
+ + V +D W+ + ++ G + +E AR +F HA ++ + ++
Sbjct: 577 KIFKYPHV---KDIWVTYLTKFVKRYG--------KTKLERARELFEHAVSMAPSDAVRT 625
Query: 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMG---AKEKWLAGDVPAARDILQ 448
++L+ A+LE+ +G + + + +A P+ + L + ++ + G VP R+I +
Sbjct: 626 LYLQYAKLEEDYGLAKRAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFG-VPRTREIYE 684
Query: 449 EAYAT-IPNSE-EIWLAAF-KLEFENRELERARMLL---AKARDMGGTERVWMKSAIVER 502
+A + +P+ + +I F +LE E++RAR L ++ D W K E
Sbjct: 685 QAIESGLPHKDVKIMCIKFAELERSLGEIDRARALYKYSSQFADPRSDPEFWNKWHEFEV 744
Query: 503 ELGNNAEERGFIEEGLKR 520
+ GN R + +KR
Sbjct: 745 QHGNEDTYREMLR--IKR 760
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 130 (50.8 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 60/266 (22%), Positives = 99/266 (37%)
Query: 368 KRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLW 427
K+ IE R+IF A + T K++WLK ++E + + S LL + V P + W
Sbjct: 83 KQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFW 142
Query: 428 LMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDM 487
A + + + AR+I E + E +L E E+ + R + +
Sbjct: 143 KKYAHLEEILNNYVNARNIY-ERWIKFKIDESSFLCYIYFEERCNEINKCREIFERLIVS 201
Query: 488 GGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGHLKEA 544
+ K E++ N R E+ ++ PS + N ++ EE +
Sbjct: 202 IPKLECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERC 261
Query: 545 KEAYQSGCNQCP-NCIPLWYS--------LANLEEKRNGLNGLSKARAVLSVARLKNPLN 595
K+ Y P N L Y AN +E L L K R KN +
Sbjct: 262 KKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESL--LIKERIFYEDELKKNKND 319
Query: 596 PEIWLATIRAESKHGNKKEADSFIAK 621
+IW I+ E + N + I +
Sbjct: 320 YDIWFNYIKLEESNINNINKEKCIIR 345
Score = 40 (19.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 662 VFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692
+F A V+KAR+ FN A+ P+
Sbjct: 411 IFILYATFELRQLNVNKARSIFNNALQTIPN 441
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 130 (50.8 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 60/266 (22%), Positives = 99/266 (37%)
Query: 368 KRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLW 427
K+ IE R+IF A + T K++WLK ++E + + S LL + V P + W
Sbjct: 83 KQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFW 142
Query: 428 LMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDM 487
A + + + AR+I E + E +L E E+ + R + +
Sbjct: 143 KKYAHLEEILNNYVNARNIY-ERWIKFKIDESSFLCYIYFEERCNEINKCREIFERLIVS 201
Query: 488 GGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGHLKEA 544
+ K E++ N R E+ ++ PS + N ++ EE +
Sbjct: 202 IPKLECFYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERC 261
Query: 545 KEAYQSGCNQCP-NCIPLWYS--------LANLEEKRNGLNGLSKARAVLSVARLKNPLN 595
K+ Y P N L Y AN +E L L K R KN +
Sbjct: 262 KKIYIEALKILPKNKSELLYKNFLQFQKKYANKDELHESL--LIKERIFYEDELKKNKND 319
Query: 596 PEIWLATIRAESKHGNKKEADSFIAK 621
+IW I+ E + N + I +
Sbjct: 320 YDIWFNYIKLEESNINNINKEKCIIR 345
Score = 40 (19.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 662 VFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692
+F A V+KAR+ FN A+ P+
Sbjct: 411 IFILYATFELRQLNVNKARSIFNNALQTIPN 441
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 701 684 0.00079 121 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 629 (67 KB)
Total size of DFA: 378 KB (2182 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.87u 0.12s 58.99t Elapsed: 00:00:04
Total cpu time: 58.90u 0.12s 59.02t Elapsed: 00:00:04
Start: Tue May 21 00:38:14 2013 End: Tue May 21 00:38:18 2013