BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040951
         (701 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587
           W  LG    + G   EA E YQ      P     WY+L N   K+   +   +A      
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD---EAIEYYQK 60

Query: 588 ARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL 636
           A   +P + E W     A  K G+  EA  +  KAL+  P S   W  L
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109



 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 504 LGNNAEERGFIEEGLKRF-------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556
           LGN   ++G  +E ++ +       P     W  LG    + G   EA E YQ      P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEAD 616
                WY+L N   K+   +   +A      A   +P + E W     A  K G+  EA 
Sbjct: 67  RSAEAWYNLGNAYYKQGDYD---EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123

Query: 617 SFIAKALQKCPNS 629
            +  KAL+  P S
Sbjct: 124 EYYQKALELDPRS 136



 Score = 35.4 bits (80), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 597 EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL----IKMVPHHDRKSKGKDA 652
           E W     A  K G+  EA  +  KAL+  P S   W  L     K   + +     + A
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

Query: 653 LVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFW 697
           L    R    +  +   ++     D+A  ++ KA+ LDP + + W
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 42.0 bits (97), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587
           W  LG    + G   EA E YQ      PN    WY+L N   K+   +   +A      
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD---EAIEYYQK 68

Query: 588 ARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630
           A   +P N E W     A  K G+  EA  +  KAL+  PN+ 
Sbjct: 69  ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111



 Score = 35.8 bits (81), Expect = 0.084,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%)

Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543
           A D G +   W        + G+  E   + ++ L+  P+    W  LG    + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 544 AKEAYQSGCNQCPNCIPLWYSLAN 567
           A E YQ      PN    WY+L N
Sbjct: 62  AIEYYQKALELDPNNAEAWYNLGN 85



 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 48/139 (34%), Gaps = 33/139 (23%)

Query: 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEAD 616
           N    WY+L N   K+   +   +A      A   +P N E W     A  K G+  EA 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYD---EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 617 SFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKV 676
            +  KAL+  PN+   W  L                                 ++     
Sbjct: 64  EYYQKALELDPNNAEAWYNL------------------------------GNAYYKQGDY 93

Query: 677 DKARNWFNKAVSLDPDTGD 695
           D+A  ++ KA+ LDP+  +
Sbjct: 94  DEAIEYYQKALELDPNNAE 112


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 42.0 bits (97), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587
           W  LG    + G   EA E YQ      PN    WY+L N   K+   +   +A      
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYD---EAIEYYQK 68

Query: 588 ARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630
           A    P N E W     A  K G+  EA  +  KAL+  PN+ 
Sbjct: 69  ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNA 111



 Score = 38.9 bits (89), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%)

Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543
           A D G +   W        + G+  E   + ++ L+ +P+    W  LG    + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61

Query: 544 AKEAYQSGCNQCPNCIPLWYSLAN 567
           A E YQ      PN    WY+L N
Sbjct: 62  AIEYYQKALELYPNNAEAWYNLGN 85



 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEAD 616
           N    WY+L N   K+   +   +A      A    P N E W     A  K G+  EA 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYD---EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63

Query: 617 SFIAKALQKCPNSGILWAEL 636
            +  KAL+  PN+   W  L
Sbjct: 64  EYYQKALELYPNNAEAWYNL 83



 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 393 WLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYA 452
           W          G  +  I   +KA+  +P     W       +  GD   A +  Q+A  
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 453 TIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERG 512
             PN+ E W       ++  + + A     KA ++      +  +A  ++ LGN  +++G
Sbjct: 72  LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------YPNNAEAKQNLGNAKQKQG 125



 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 456 NSEEIWLAAFKLEFENRELERARMLLAKARDM-GGTERVWMKSAIVERELGNNAEERGFI 514
           NS E W       ++  + + A     KA ++       W        + G+  E   + 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKR 572
           ++ L+ +P+    W  LG    + G   EA E YQ      PN      +L N ++K+
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQ 124



 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%)

Query: 368 KRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLW 427
           K+G  + A   +  A  ++      W          G  +  I   +KA+  +P     W
Sbjct: 21  KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAW 80

Query: 428 LMGAKEKWLAGDVPAARDILQEAYATIPNSEE 459
                  +  GD   A +  Q+A    PN+ E
Sbjct: 81  YNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112


>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 36.2 bits (82), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 3/103 (2%)

Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587
           W  LG    + G  ++A E YQ      PN    WY+L N   K+       KA      
Sbjct: 12  WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQ---KAIEYYQK 68

Query: 588 ARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630
           A   +P N + W     A  K G+ ++A     KAL+  PN+ 
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111



 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%)

Query: 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543
           A D G +   W        + G+  +   + ++ L+  P+  + W  LG    + G  ++
Sbjct: 2   AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK 61

Query: 544 AKEAYQSGCNQCPNCIPLWYSLAN 567
           A E YQ      PN    WY   N
Sbjct: 62  AIEYYQKALELDPNNAKAWYRRGN 85


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 35.8 bits (81), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 78/296 (26%)

Query: 431 AKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT 490
           A  ++ AGD  AA     + +   P++  + L    + F+ R L+R+    A    +   
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS----AHFSTLAIK 61

Query: 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRF-------PSFFNLWLMLGQLEERLGHLKE 543
           +   +  A     LGN  +ERG ++E ++ +       P F + ++ L       G ++ 
Sbjct: 62  QNPLLAEAY--SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119

Query: 544 AKEAYQSGCNQCPN--CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLA 601
           A +AY S     P+  C+            R+ L  L KA                    
Sbjct: 120 AVQAYVSALQYNPDLYCV------------RSDLGNLLKAL------------------- 148

Query: 602 TIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL---------IKMVPHHDRKSKGKDA 652
                   G  +EA +   KA++  PN  + W+ L         I +  HH  K+     
Sbjct: 149 --------GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA----- 195

Query: 653 LVKSDRDPHVFAAVAKL---FWHDRKVDKARNWFNKAVSLDPD----TGDFWALYY 701
                 DP+   A   L       R  D+A   + +A+SL P+     G+   +YY
Sbjct: 196 ---VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248


>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
           Tail Indicating Conformational Plasticity
          Length = 533

 Score = 35.0 bits (79), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 467 LEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN 526
             F    L  A++LL ++ ++  T   ++  A+   +  N+ E   F ++ +   P +  
Sbjct: 248 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP 307

Query: 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLS 586
            +   GQ+   L   K AKE +Q   +  P  +  +  LA L  K+      +++ A  +
Sbjct: 308 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ---GKFTESEAFFN 364

Query: 587 VARLKNPLNPEI 598
             +LK P  PE+
Sbjct: 365 ETKLKFPTLPEV 376


>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
           Fragment
 pdb|3FP3|A Chain A, Crystal Structure Of Tom71
 pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
           Fragment
          Length = 537

 Score = 35.0 bits (79), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 467 LEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN 526
             F    L  A++LL ++ ++  T   ++  A+   +  N+ E   F ++ +   P +  
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP 311

Query: 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLS 586
            +   GQ+   L   K AKE +Q   +  P  +  +  LA L  K+      +++ A  +
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ---GKFTESEAFFN 368

Query: 587 VARLKNPLNPEI 598
             +LK P  PE+
Sbjct: 369 ETKLKFPTLPEV 380


>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
           Apostructure
 pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
           Apostructure
 pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
           With Udp-Glcnac Phosphonate Analogue
 pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
           With Udp-Glcnac Phosphonate Analogue
 pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
           Transferase Inhibitors.
 pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
           Transferase Inhibitors.
 pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
 pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
 pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
 pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
          Length = 568

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463
           G RE L   LR AV + PQ  V WLM A  +   GD  A    +Q   A  P   E    
Sbjct: 5   GPRELL--QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 464 AFKLEFENRELERARMLLAKARD 486
             ++ +  +    A +LL +A D
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASD 85


>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
           Transferase Homolog: Insight Into Molecular Control Of
           Intracellular Glycosylation
 pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
           Transferase Homolog: Insight Into Molecular Control Of
           Intracellular Glycosylation
          Length = 568

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463
           G RE L   LR AV + PQ  V WLM A  +   GD  A    +Q   A  P   E    
Sbjct: 5   GPRELL--QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 464 AFKLEFENRELERARMLLAKARD 486
             ++ +  +    A +LL +A D
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASD 85


>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
          Length = 530

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 672 HDRKVDKARNWFNKAVSLDPDTGDFWALY 700
            ++ +DKAR  + + V+  P +G FW LY
Sbjct: 24  QNQPIDKARKTYERLVAQFPSSGRFWKLY 52


>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
 pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
          Length = 597

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 643 HDRKSKGKDALVKSD---RDPH---VFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696
           H+   K K  L+ +D   R P     + AV   +    K+ +AR +F+K+ ++DP  G  
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

Query: 697 W 697
           W
Sbjct: 410 W 410


>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 91

 Score = 29.3 bits (64), Expect = 8.0,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567
           W  LG    + G   EA E YQ      PN    WY+L N
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,984,368
Number of Sequences: 62578
Number of extensions: 780318
Number of successful extensions: 1939
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 73
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)