Query 040951
Match_columns 701
No_of_seqs 980 out of 4221
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0495 HAT repeat protein [RN 100.0 3E-139 6E-144 1044.6 70.1 697 2-701 121-858 (913)
2 KOG0495 HAT repeat protein [RN 100.0 2.4E-54 5.2E-59 433.9 57.5 578 93-699 262-890 (913)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-40 3E-45 393.6 69.8 516 165-699 342-876 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-40 4.7E-45 391.9 70.5 548 141-697 136-807 (899)
5 KOG1915 Cell cycle control pro 100.0 5.4E-39 1.2E-43 312.5 49.7 454 169-641 56-551 (677)
6 PRK11447 cellulose synthase su 100.0 2E-37 4.4E-42 367.9 67.0 538 140-688 38-739 (1157)
7 PRK11447 cellulose synthase su 100.0 1.7E-37 3.8E-42 368.5 65.3 535 156-695 32-706 (1157)
8 KOG4626 O-linked N-acetylgluco 100.0 5.5E-40 1.2E-44 328.7 35.7 424 228-699 63-495 (966)
9 KOG4626 O-linked N-acetylgluco 100.0 4.9E-39 1.1E-43 321.9 35.8 470 104-637 19-497 (966)
10 PRK09782 bacteriophage N4 rece 100.0 5.3E-32 1.1E-36 307.0 62.6 535 144-692 58-743 (987)
11 KOG1915 Cell cycle control pro 100.0 2.3E-32 4.9E-37 266.5 49.3 489 119-629 42-589 (677)
12 KOG2002 TPR-containing nuclear 100.0 2.3E-31 4.9E-36 281.3 52.3 517 168-700 110-686 (1018)
13 KOG2002 TPR-containing nuclear 100.0 5.9E-31 1.3E-35 278.2 51.3 512 168-695 146-751 (1018)
14 TIGR00990 3a0801s09 mitochondr 100.0 6.1E-31 1.3E-35 294.2 45.7 420 252-695 136-577 (615)
15 PRK09782 bacteriophage N4 rece 100.0 2.6E-28 5.7E-33 277.0 60.0 559 98-676 48-760 (987)
16 TIGR00990 3a0801s09 mitochondr 100.0 4.3E-29 9.3E-34 279.3 50.5 426 163-632 138-578 (615)
17 PRK15174 Vi polysaccharide exp 100.0 7.9E-28 1.7E-32 267.9 48.4 356 255-629 17-385 (656)
18 PRK15174 Vi polysaccharide exp 100.0 8.2E-28 1.8E-32 267.8 46.7 360 284-692 16-384 (656)
19 PRK10049 pgaA outer membrane p 100.0 2.7E-27 5.9E-32 269.3 47.5 391 256-696 28-463 (765)
20 PRK10049 pgaA outer membrane p 100.0 1.6E-26 3.4E-31 263.1 46.3 402 213-634 15-465 (765)
21 KOG2047 mRNA splicing factor [ 100.0 5.6E-25 1.2E-29 222.6 47.9 524 174-700 15-700 (835)
22 KOG0547 Translocase of outer m 99.9 1.2E-24 2.6E-29 214.0 35.6 373 254-628 126-569 (606)
23 KOG0547 Translocase of outer m 99.9 4E-25 8.8E-30 217.3 29.7 325 363-690 122-567 (606)
24 PLN03077 Protein ECB2; Provisi 99.9 1.8E-22 3.9E-27 235.0 54.3 531 139-699 130-732 (857)
25 PLN03077 Protein ECB2; Provisi 99.9 3E-21 6.6E-26 224.7 55.5 507 164-699 133-696 (857)
26 KOG2047 mRNA splicing factor [ 99.9 6.1E-21 1.3E-25 193.6 47.8 419 168-591 42-615 (835)
27 PRK14574 hmsH outer membrane p 99.9 5.2E-21 1.1E-25 213.5 50.9 419 228-695 49-519 (822)
28 KOG1155 Anaphase-promoting com 99.9 2.7E-22 5.8E-27 196.5 35.1 362 285-692 176-539 (559)
29 PRK11788 tetratricopeptide rep 99.9 3.2E-22 6.9E-27 212.7 38.8 260 366-629 45-315 (389)
30 KOG1126 DNA-binding cell divis 99.9 1.6E-23 3.5E-28 214.8 26.3 296 367-695 330-626 (638)
31 KOG1155 Anaphase-promoting com 99.9 1.1E-21 2.5E-26 192.1 36.5 352 255-627 176-538 (559)
32 KOG2076 RNA polymerase III tra 99.9 5.6E-20 1.2E-24 194.5 50.3 535 156-693 143-853 (895)
33 PRK14574 hmsH outer membrane p 99.9 2.3E-20 5E-25 208.3 50.3 428 162-598 44-520 (822)
34 PRK11788 tetratricopeptide rep 99.9 9.9E-22 2.1E-26 208.9 37.9 267 283-561 45-318 (389)
35 PLN03081 pentatricopeptide (PP 99.9 4.4E-20 9.6E-25 209.8 49.1 392 252-698 167-568 (697)
36 KOG1126 DNA-binding cell divis 99.9 2.3E-22 5E-27 206.4 26.8 264 363-629 360-624 (638)
37 KOG1173 Anaphase-promoting com 99.9 1E-20 2.3E-25 190.2 37.0 441 249-694 22-523 (611)
38 PLN03218 maturation of RBCL 1; 99.9 9.1E-19 2E-23 201.0 56.8 463 200-690 355-842 (1060)
39 PF13429 TPR_15: Tetratricopep 99.9 1.3E-23 2.9E-28 211.6 14.6 270 384-689 4-277 (280)
40 PLN03218 maturation of RBCL 1; 99.9 7.5E-19 1.6E-23 201.6 55.1 442 228-693 352-820 (1060)
41 PLN03081 pentatricopeptide (PP 99.9 1E-19 2.2E-24 206.9 46.1 434 165-625 100-557 (697)
42 KOG2076 RNA polymerase III tra 99.9 1E-19 2.2E-24 192.6 39.0 322 283-623 150-510 (895)
43 KOG1173 Anaphase-promoting com 99.9 1.1E-19 2.3E-24 182.9 33.6 264 364-630 252-523 (611)
44 KOG2003 TPR repeat-containing 99.9 2.6E-19 5.6E-24 174.6 34.9 425 212-640 233-704 (840)
45 TIGR00540 hemY_coli hemY prote 99.9 2.9E-19 6.4E-24 189.2 38.6 290 366-689 94-399 (409)
46 PF13429 TPR_15: Tetratricopep 99.9 3.3E-22 7.1E-27 201.5 13.8 256 365-625 17-277 (280)
47 KOG4162 Predicted calmodulin-b 99.9 5.1E-19 1.1E-23 184.2 36.7 417 245-694 321-788 (799)
48 KOG1127 TPR repeat-containing 99.9 8.1E-19 1.8E-23 186.3 38.6 292 404-698 472-888 (1238)
49 KOG1174 Anaphase-promoting com 99.9 1.7E-18 3.8E-23 167.3 34.3 296 367-695 209-506 (564)
50 TIGR00540 hemY_coli hemY prote 99.9 4.5E-18 9.7E-23 180.2 37.1 294 313-625 90-399 (409)
51 KOG0548 Molecular co-chaperone 99.8 3.4E-18 7.5E-23 171.7 33.1 384 226-621 15-485 (539)
52 KOG1174 Anaphase-promoting com 99.8 2.1E-17 4.5E-22 160.0 36.6 298 258-571 213-517 (564)
53 PRK10747 putative protoheme IX 99.8 1.1E-17 2.4E-22 176.2 38.2 287 367-690 95-391 (398)
54 KOG0624 dsRNA-activated protei 99.8 5.5E-18 1.2E-22 160.1 31.5 297 366-695 48-376 (504)
55 KOG1127 TPR repeat-containing 99.8 4.1E-17 8.8E-22 173.6 38.7 422 249-688 463-995 (1238)
56 KOG4162 Predicted calmodulin-b 99.8 1.5E-17 3.3E-22 173.4 34.8 410 196-631 337-789 (799)
57 PRK10747 putative protoheme IX 99.8 2.7E-17 5.9E-22 173.3 37.0 292 313-626 90-391 (398)
58 KOG2003 TPR repeat-containing 99.8 9.6E-17 2.1E-21 156.8 37.4 433 163-611 212-709 (840)
59 KOG0548 Molecular co-chaperone 99.8 2E-17 4.4E-22 166.2 31.5 376 253-696 12-462 (539)
60 PRK12370 invasion protein regu 99.8 4.7E-18 1E-22 186.8 28.9 250 370-625 275-535 (553)
61 PF06424 PRP1_N: PRP1 splicing 99.8 3.8E-21 8.3E-26 159.7 3.0 47 2-48 87-133 (133)
62 PRK12370 invasion protein regu 99.8 2.4E-17 5.2E-22 181.2 32.5 250 404-689 275-535 (553)
63 KOG0624 dsRNA-activated protei 99.8 4.6E-17 9.9E-22 154.0 28.7 300 279-596 44-375 (504)
64 KOG1914 mRNA cleavage and poly 99.8 4.8E-15 1E-19 148.7 41.4 414 206-627 10-503 (656)
65 COG3063 PilF Tfp pilus assembl 99.8 8.4E-17 1.8E-21 145.1 24.8 201 426-629 37-240 (250)
66 PRK11189 lipoprotein NlpI; Pro 99.8 7.1E-17 1.5E-21 162.8 27.2 197 491-692 64-268 (296)
67 COG3063 PilF Tfp pilus assembl 99.8 1.5E-16 3.2E-21 143.5 25.0 205 391-598 36-243 (250)
68 COG2956 Predicted N-acetylgluc 99.8 2.1E-15 4.5E-20 142.2 33.1 295 262-569 24-325 (389)
69 PRK11189 lipoprotein NlpI; Pro 99.8 2.8E-16 6E-21 158.5 28.4 237 368-610 38-285 (296)
70 KOG1125 TPR repeat-containing 99.8 2.8E-17 6.2E-22 166.5 20.8 244 365-613 294-559 (579)
71 TIGR02521 type_IV_pilW type IV 99.8 3.3E-16 7.2E-21 153.4 28.1 199 390-591 31-232 (234)
72 KOG1129 TPR repeat-containing 99.8 1.3E-16 2.8E-21 150.0 23.5 258 436-696 191-465 (478)
73 KOG1156 N-terminal acetyltrans 99.8 7.7E-15 1.7E-19 150.5 38.2 413 258-689 22-511 (700)
74 TIGR02521 type_IV_pilW type IV 99.8 5.1E-16 1.1E-20 152.1 28.1 202 423-627 30-234 (234)
75 COG2956 Predicted N-acetylgluc 99.8 4.9E-15 1.1E-19 139.7 32.3 258 366-628 45-314 (389)
76 KOG1129 TPR repeat-containing 99.7 2.5E-16 5.3E-21 148.1 20.8 233 364-600 231-467 (478)
77 KOG1125 TPR repeat-containing 99.7 2.2E-16 4.9E-21 160.1 21.1 231 394-628 289-530 (579)
78 KOG1156 N-terminal acetyltrans 99.7 5.7E-14 1.2E-18 144.2 35.5 234 166-435 21-264 (700)
79 KOG1914 mRNA cleavage and poly 99.7 9.2E-13 2E-17 132.5 41.4 410 176-593 10-503 (656)
80 PLN02789 farnesyltranstransfer 99.7 1E-14 2.2E-19 146.5 26.1 191 437-630 50-255 (320)
81 PLN02789 farnesyltranstransfer 99.7 2.7E-14 5.9E-19 143.4 28.2 205 367-571 48-267 (320)
82 cd05804 StaR_like StaR_like; a 99.7 3.2E-13 6.9E-18 141.6 37.0 309 303-627 2-338 (355)
83 KOG0550 Molecular chaperone (D 99.7 6.9E-15 1.5E-19 143.1 20.5 320 364-686 57-440 (486)
84 KOG2396 HAT (Half-A-TPR) repea 99.7 2.7E-11 5.9E-16 121.3 46.0 415 173-626 92-560 (568)
85 KOG2376 Signal recognition par 99.6 8.7E-12 1.9E-16 127.1 40.1 383 228-637 27-499 (652)
86 KOG1258 mRNA processing protei 99.6 5E-12 1.1E-16 130.2 38.5 181 391-571 298-487 (577)
87 cd05804 StaR_like StaR_like; a 99.6 8.8E-13 1.9E-17 138.3 33.0 305 386-694 2-341 (355)
88 COG3071 HemY Uncharacterized e 99.6 9.7E-12 2.1E-16 121.5 35.8 285 287-591 98-390 (400)
89 KOG2376 Signal recognition par 99.6 3.6E-11 7.8E-16 122.7 40.3 445 164-620 24-515 (652)
90 KOG3785 Uncharacterized conser 99.6 4.4E-12 9.5E-17 121.0 30.4 425 257-698 36-498 (557)
91 COG3071 HemY Uncharacterized e 99.6 1.6E-11 3.4E-16 120.1 34.7 286 367-689 95-390 (400)
92 PF12569 NARP1: NMDA receptor- 99.6 6.2E-12 1.3E-16 133.6 34.1 299 365-691 13-336 (517)
93 KOG0550 Molecular chaperone (D 99.6 3.8E-13 8.1E-18 131.1 22.0 267 257-557 63-353 (486)
94 TIGR03302 OM_YfiO outer membra 99.5 7.3E-13 1.6E-17 129.9 22.0 191 455-692 30-235 (235)
95 KOG1840 Kinesin light chain [C 99.5 2.4E-12 5.1E-17 135.0 25.6 237 386-625 195-479 (508)
96 KOG1840 Kinesin light chain [C 99.5 2.1E-11 4.5E-16 128.0 31.4 224 364-590 207-478 (508)
97 TIGR03302 OM_YfiO outer membra 99.5 3.2E-12 7E-17 125.3 22.8 196 387-627 30-234 (235)
98 KOG3060 Uncharacterized conser 99.5 9.6E-12 2.1E-16 114.0 23.7 177 429-605 57-234 (289)
99 KOG1070 rRNA processing protei 99.5 8.8E-12 1.9E-16 137.8 27.6 246 375-624 1443-1699(1710)
100 PF12569 NARP1: NMDA receptor- 99.5 4.8E-10 1E-14 119.4 40.1 295 162-488 14-335 (517)
101 KOG3060 Uncharacterized conser 99.5 2.8E-11 6E-16 111.0 25.4 206 320-534 25-234 (289)
102 KOG1070 rRNA processing protei 99.5 7.1E-12 1.5E-16 138.5 24.4 215 409-626 1443-1664(1710)
103 COG5107 RNA14 Pre-mRNA 3'-end 99.5 2.5E-09 5.5E-14 105.6 38.0 447 156-629 46-535 (660)
104 KOG2396 HAT (Half-A-TPR) repea 99.5 1.6E-09 3.5E-14 108.8 36.7 393 166-591 119-559 (568)
105 KOG1258 mRNA processing protei 99.4 2.5E-09 5.5E-14 110.6 39.0 392 258-674 60-489 (577)
106 PRK15359 type III secretion sy 99.4 3.9E-12 8.5E-17 113.1 15.8 121 480-605 15-135 (144)
107 PRK10370 formate-dependent nit 99.4 1.5E-11 3.3E-16 115.5 20.2 152 464-628 22-176 (198)
108 PRK10370 formate-dependent nit 99.4 1.6E-11 3.4E-16 115.4 20.2 153 430-596 22-178 (198)
109 COG5107 RNA14 Pre-mRNA 3'-end 99.4 3.3E-09 7.2E-14 104.9 36.1 421 204-642 30-514 (660)
110 PRK15359 type III secretion sy 99.4 4.9E-12 1.1E-16 112.5 15.0 119 511-635 13-131 (144)
111 PRK14720 transcript cleavage f 99.4 1.8E-10 4E-15 127.8 29.3 262 272-595 26-310 (906)
112 COG5010 TadD Flp pilus assembl 99.4 4.5E-11 9.7E-16 111.0 20.3 177 441-621 50-227 (257)
113 KOG1128 Uncharacterized conser 99.4 2.3E-11 5E-16 127.1 18.0 284 388-689 396-701 (777)
114 COG5010 TadD Flp pilus assembl 99.4 1.2E-10 2.7E-15 108.1 20.6 175 409-587 52-227 (257)
115 PRK14720 transcript cleavage f 99.4 1.3E-10 2.8E-15 129.0 24.4 258 384-689 25-283 (906)
116 KOG4340 Uncharacterized conser 99.4 6.5E-09 1.4E-13 97.5 31.5 392 251-698 18-451 (459)
117 PRK04841 transcriptional regul 99.3 5.7E-09 1.2E-13 123.6 39.6 302 367-695 420-766 (903)
118 PRK15179 Vi polysaccharide bio 99.3 3.6E-10 7.8E-15 124.8 25.3 138 384-521 80-218 (694)
119 KOG1128 Uncharacterized conser 99.3 4.6E-10 1E-14 117.5 23.9 259 363-639 405-676 (777)
120 TIGR02552 LcrH_SycD type III s 99.3 4.4E-11 9.5E-16 106.0 14.0 116 547-695 5-120 (135)
121 PRK15179 Vi polysaccharide bio 99.3 3.4E-10 7.3E-15 125.1 23.3 135 491-628 86-220 (694)
122 KOG3785 Uncharacterized conser 99.3 2E-08 4.3E-13 96.5 31.6 373 283-684 32-452 (557)
123 TIGR02552 LcrH_SycD type III s 99.3 9.9E-11 2.1E-15 103.8 14.3 116 513-631 5-120 (135)
124 PF04733 Coatomer_E: Coatomer 99.2 1.8E-10 4E-15 114.4 15.4 255 366-631 11-271 (290)
125 PRK04841 transcriptional regul 99.2 5.4E-08 1.2E-12 115.4 38.8 334 287-631 388-766 (903)
126 COG4783 Putative Zn-dependent 99.2 5.3E-09 1.1E-13 105.5 23.5 159 421-599 303-462 (484)
127 COG4783 Putative Zn-dependent 99.2 6.8E-09 1.5E-13 104.7 23.8 128 491-621 306-433 (484)
128 PF04733 Coatomer_E: Coatomer 99.2 2.4E-10 5.2E-15 113.6 12.5 254 401-694 12-270 (290)
129 KOG0553 TPR repeat-containing 99.1 1E-09 2.3E-14 104.0 12.6 113 498-613 88-200 (304)
130 PRK15363 pathogenicity island 99.1 3.9E-09 8.5E-14 91.8 13.3 102 522-626 32-133 (157)
131 KOG3617 WD40 and TPR repeat-co 99.0 1.1E-06 2.4E-11 93.3 33.1 351 286-686 741-1171(1416)
132 PRK15363 pathogenicity island 99.0 8.2E-09 1.8E-13 89.9 14.8 101 455-555 32-133 (157)
133 COG3898 Uncharacterized membra 99.0 2.5E-06 5.5E-11 83.5 33.0 219 367-590 165-391 (531)
134 PF13525 YfiO: Outer membrane 99.0 4.7E-08 1E-12 92.7 20.6 170 458-680 5-198 (203)
135 COG3898 Uncharacterized membra 99.0 2E-06 4.4E-11 84.2 31.2 292 313-625 90-392 (531)
136 KOG4340 Uncharacterized conser 99.0 3.1E-07 6.6E-12 86.5 24.2 181 367-549 21-202 (459)
137 PF05843 Suf: Suppressor of fo 99.0 9.5E-09 2.1E-13 102.5 15.1 140 492-634 2-145 (280)
138 PF13525 YfiO: Outer membrane 99.0 8.8E-08 1.9E-12 90.9 21.0 174 423-616 4-198 (203)
139 KOG0553 TPR repeat-containing 99.0 5.8E-09 1.3E-13 99.0 12.5 112 363-474 88-199 (304)
140 COG4235 Cytochrome c biogenesi 99.0 1.9E-08 4E-13 96.4 16.0 124 506-629 137-260 (287)
141 PRK10866 outer membrane biogen 99.0 1.3E-07 2.9E-12 91.7 22.4 180 457-686 31-238 (243)
142 PLN03088 SGT1, suppressor of 99.0 1.3E-08 2.8E-13 105.2 16.1 111 496-609 7-117 (356)
143 COG4785 NlpI Lipoprotein NlpI, 98.9 9E-08 1.9E-12 86.0 17.4 193 491-690 65-267 (297)
144 PRK10866 outer membrane biogen 98.9 3.3E-07 7.2E-12 89.0 23.1 54 564-620 180-236 (243)
145 KOG3617 WD40 and TPR repeat-co 98.9 7.3E-07 1.6E-11 94.6 26.5 227 365-623 737-994 (1416)
146 PF05843 Suf: Suppressor of fo 98.9 3.9E-08 8.5E-13 98.1 16.5 139 391-529 2-145 (280)
147 PLN03088 SGT1, suppressor of 98.9 3.7E-08 7.9E-13 101.9 16.0 107 365-471 11-117 (356)
148 TIGR02795 tol_pal_ybgF tol-pal 98.9 4.6E-08 9.9E-13 84.3 14.3 101 493-596 4-110 (119)
149 TIGR02795 tol_pal_ybgF tol-pal 98.9 8.7E-08 1.9E-12 82.6 14.9 105 525-632 2-112 (119)
150 KOG0128 RNA-binding protein SA 98.9 2.5E-05 5.4E-10 84.0 35.7 419 166-621 93-559 (881)
151 PF09976 TPR_21: Tetratricopep 98.9 1.3E-07 2.9E-12 84.5 16.4 116 436-552 23-145 (145)
152 COG4235 Cytochrome c biogenesi 98.9 1.1E-07 2.4E-12 91.1 16.3 121 370-490 136-259 (287)
153 KOG1130 Predicted G-alpha GTPa 98.8 2.7E-08 5.9E-13 97.4 12.2 260 363-625 24-344 (639)
154 KOG1130 Predicted G-alpha GTPa 98.8 3.8E-08 8.2E-13 96.4 13.1 268 397-691 24-346 (639)
155 COG0457 NrfG FOG: TPR repeat [ 98.8 1.9E-05 4.1E-10 76.8 31.7 223 403-628 36-268 (291)
156 COG0457 NrfG FOG: TPR repeat [ 98.8 1.5E-05 3.3E-10 77.5 30.2 223 369-594 36-268 (291)
157 PF09976 TPR_21: Tetratricopep 98.8 3.3E-07 7.1E-12 81.9 16.3 117 503-623 23-145 (145)
158 cd00189 TPR Tetratricopeptide 98.8 8E-08 1.7E-12 78.6 11.4 97 528-627 3-99 (100)
159 cd00189 TPR Tetratricopeptide 98.8 9.3E-08 2E-12 78.2 11.7 98 493-593 2-99 (100)
160 KOG2053 Mitochondrial inherita 98.8 0.00042 9.1E-09 75.5 41.2 212 198-423 25-259 (932)
161 KOG0128 RNA-binding protein SA 98.8 2.5E-05 5.4E-10 84.0 31.3 373 156-550 120-559 (881)
162 PF14938 SNAP: Soluble NSF att 98.8 1.5E-06 3.4E-11 87.1 21.8 131 426-556 116-268 (282)
163 PRK02603 photosystem I assembl 98.7 4.9E-07 1.1E-11 83.5 16.0 94 491-587 35-131 (172)
164 KOG3616 Selective LIM binding 98.7 0.00015 3.3E-09 76.6 35.3 285 367-693 717-1028(1636)
165 KOG3081 Vesicle coat complex C 98.7 1.3E-05 2.8E-10 75.0 24.4 252 366-630 18-276 (299)
166 PF14938 SNAP: Soluble NSF att 98.7 3.3E-07 7.1E-12 91.9 15.3 143 527-696 77-232 (282)
167 PF13432 TPR_16: Tetratricopep 98.7 8.8E-08 1.9E-12 72.3 7.7 61 498-558 4-64 (65)
168 PRK10153 DNA-binding transcrip 98.7 1.2E-06 2.6E-11 94.3 19.2 120 507-630 358-487 (517)
169 CHL00033 ycf3 photosystem I as 98.7 6.2E-07 1.3E-11 82.5 14.8 80 491-570 35-117 (168)
170 PRK10803 tol-pal system protei 98.7 9E-07 1.9E-11 86.5 16.6 103 491-596 142-251 (263)
171 PRK02603 photosystem I assembl 98.7 9.5E-07 2.1E-11 81.6 15.9 118 388-524 33-153 (172)
172 PF13432 TPR_16: Tetratricopep 98.7 1.1E-07 2.3E-12 71.9 7.8 62 531-595 3-64 (65)
173 PF13414 TPR_11: TPR repeat; P 98.6 1.4E-07 3E-12 72.2 8.2 66 525-593 3-69 (69)
174 PRK10803 tol-pal system protei 98.6 1.1E-06 2.3E-11 86.0 16.4 104 458-561 142-253 (263)
175 CHL00033 ycf3 photosystem I as 98.6 8.5E-07 1.8E-11 81.6 14.9 115 506-623 14-140 (168)
176 PRK11906 transcriptional regul 98.6 1.4E-06 3.1E-11 88.9 17.4 146 371-517 273-433 (458)
177 PRK10153 DNA-binding transcrip 98.6 1.7E-06 3.7E-11 93.2 18.9 85 475-560 401-488 (517)
178 PF12895 Apc3: Anaphase-promot 98.6 1.8E-07 3.8E-12 74.8 7.8 81 369-450 2-84 (84)
179 KOG2053 Mitochondrial inherita 98.6 0.00019 4E-09 78.2 32.4 225 367-595 20-259 (932)
180 PRK11906 transcriptional regul 98.6 4.6E-06 1E-10 85.2 19.5 118 407-524 275-405 (458)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.5E-06 3.3E-11 89.4 16.0 118 464-586 175-292 (395)
182 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.9E-06 4.1E-11 88.7 16.0 120 495-620 173-292 (395)
183 PF12895 Apc3: Anaphase-promot 98.6 2.2E-07 4.8E-12 74.2 7.3 79 505-587 3-83 (84)
184 COG4105 ComL DNA uptake lipopr 98.5 2.4E-05 5.3E-10 73.7 21.2 67 600-693 171-237 (254)
185 KOG3081 Vesicle coat complex C 98.5 5.6E-05 1.2E-09 70.8 23.0 230 400-639 18-250 (299)
186 KOG0543 FKBP-type peptidyl-pro 98.5 1.6E-06 3.4E-11 86.3 13.7 100 526-628 258-358 (397)
187 COG4785 NlpI Lipoprotein NlpI, 98.5 1.7E-05 3.8E-10 71.6 18.6 191 392-593 67-268 (297)
188 COG4105 ComL DNA uptake lipopr 98.5 3.2E-05 7E-10 72.8 21.0 187 423-629 33-237 (254)
189 PF14559 TPR_19: Tetratricopep 98.5 4.8E-07 1E-11 69.0 7.2 65 503-567 3-67 (68)
190 PF14559 TPR_19: Tetratricopep 98.5 5.1E-07 1.1E-11 68.8 7.4 66 367-432 2-67 (68)
191 KOG0543 FKBP-type peptidyl-pro 98.5 3E-06 6.4E-11 84.4 14.3 127 363-489 215-357 (397)
192 PRK15331 chaperone protein Sic 98.5 3.6E-06 7.8E-11 73.8 12.9 101 386-486 33-133 (165)
193 COG4700 Uncharacterized protei 98.5 3.2E-05 7E-10 68.2 18.4 146 473-622 71-219 (251)
194 PRK15331 chaperone protein Sic 98.5 4E-06 8.7E-11 73.5 12.9 101 491-595 37-137 (165)
195 COG4700 Uncharacterized protei 98.5 3.1E-05 6.7E-10 68.3 18.2 146 502-682 67-215 (251)
196 PF08424 NRDE-2: NRDE-2, neces 98.5 5E-06 1.1E-10 84.7 15.8 152 173-336 6-183 (321)
197 PF12688 TPR_5: Tetratrico pep 98.4 7.9E-06 1.7E-10 69.1 13.4 94 493-589 3-102 (120)
198 KOG1941 Acetylcholine receptor 98.4 0.00013 2.8E-09 71.1 23.0 231 391-624 84-359 (518)
199 COG1729 Uncharacterized protei 98.4 8.2E-06 1.8E-10 77.6 14.7 95 465-559 148-249 (262)
200 COG1729 Uncharacterized protei 98.4 8.9E-06 1.9E-10 77.3 14.8 97 501-600 151-253 (262)
201 KOG1941 Acetylcholine receptor 98.4 0.00018 3.9E-09 70.2 22.6 223 367-592 17-276 (518)
202 KOG0985 Vesicle coat protein c 98.3 0.0031 6.8E-08 69.5 33.9 193 389-609 1103-1326(1666)
203 PF13371 TPR_9: Tetratricopept 98.3 2.8E-06 6.2E-11 65.7 8.5 64 500-563 4-67 (73)
204 PF12688 TPR_5: Tetratrico pep 98.3 1.7E-05 3.7E-10 67.1 12.9 93 460-552 3-102 (120)
205 PF13371 TPR_9: Tetratricopept 98.3 4E-06 8.6E-11 64.9 8.5 65 533-600 3-67 (73)
206 PF13512 TPR_18: Tetratricopep 98.3 3.6E-05 7.9E-10 66.1 14.0 65 460-524 12-80 (142)
207 PF13512 TPR_18: Tetratricopep 98.2 5.3E-05 1.2E-09 65.1 14.0 67 392-458 12-81 (142)
208 KOG2300 Uncharacterized conser 98.2 0.01 2.2E-07 60.6 36.6 199 471-696 288-521 (629)
209 KOG4648 Uncharacterized conser 98.2 1.6E-06 3.4E-11 83.4 4.6 225 363-596 104-335 (536)
210 KOG2471 TPR repeat-containing 98.2 0.00073 1.6E-08 68.6 22.9 323 286-622 219-681 (696)
211 KOG4234 TPR repeat-containing 98.1 3.7E-05 8E-10 68.6 12.0 105 466-570 103-213 (271)
212 KOG3616 Selective LIM binding 98.1 0.003 6.4E-08 67.2 27.5 161 505-687 746-909 (1636)
213 KOG4234 TPR repeat-containing 98.1 6E-05 1.3E-09 67.3 12.1 104 364-467 103-211 (271)
214 PF06552 TOM20_plant: Plant sp 98.1 1E-05 2.2E-10 71.6 6.9 97 578-697 7-117 (186)
215 KOG1586 Protein required for f 98.1 0.00034 7.5E-09 64.2 16.7 125 503-630 85-229 (288)
216 PF08424 NRDE-2: NRDE-2, neces 98.1 0.00031 6.7E-09 71.6 18.6 145 377-521 6-184 (321)
217 KOG2796 Uncharacterized conser 98.1 0.0027 5.9E-08 59.6 22.6 226 389-629 68-319 (366)
218 KOG2796 Uncharacterized conser 98.0 0.0051 1.1E-07 57.8 24.1 132 392-523 179-318 (366)
219 KOG2610 Uncharacterized conser 98.0 0.001 2.2E-08 64.5 19.1 154 365-518 112-274 (491)
220 KOG4648 Uncharacterized conser 98.0 2.9E-05 6.2E-10 74.9 8.3 105 497-604 103-207 (536)
221 PF04184 ST7: ST7 protein; In 98.0 0.001 2.2E-08 68.4 19.6 218 398-626 176-415 (539)
222 KOG2471 TPR repeat-containing 97.9 0.0019 4.1E-08 65.7 21.1 30 598-627 621-650 (696)
223 PF13428 TPR_14: Tetratricopep 97.9 1.2E-05 2.5E-10 54.9 3.9 41 660-700 1-41 (44)
224 KOG4555 TPR repeat-containing 97.9 0.00031 6.7E-09 58.2 11.5 85 436-520 55-144 (175)
225 PF13428 TPR_14: Tetratricopep 97.9 3.7E-05 8E-10 52.4 5.2 39 528-566 4-42 (44)
226 PF02259 FAT: FAT domain; Int 97.8 0.0099 2.1E-07 62.1 25.9 168 422-594 144-341 (352)
227 KOG4555 TPR repeat-containing 97.8 0.00052 1.1E-08 56.9 12.3 93 498-593 50-146 (175)
228 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00014 3E-09 74.6 10.0 70 520-592 70-142 (453)
229 KOG1585 Protein required for f 97.8 0.0051 1.1E-07 57.2 19.0 28 393-420 34-61 (308)
230 KOG1585 Protein required for f 97.8 0.0063 1.4E-07 56.6 19.5 78 390-482 91-174 (308)
231 PF13281 DUF4071: Domain of un 97.7 0.0051 1.1E-07 62.5 20.6 182 491-692 141-337 (374)
232 KOG1586 Protein required for f 97.7 0.028 6E-07 52.1 23.1 97 428-524 117-228 (288)
233 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00017 3.8E-09 73.8 9.9 68 488-555 71-142 (453)
234 COG5191 Uncharacterized conser 97.7 2E-05 4.4E-10 74.9 2.8 84 174-257 95-186 (435)
235 PF07719 TPR_2: Tetratricopept 97.7 9E-05 1.9E-09 47.2 5.0 34 660-693 1-34 (34)
236 PF13424 TPR_12: Tetratricopep 97.6 0.00022 4.7E-09 55.9 7.2 74 594-690 3-76 (78)
237 PF06552 TOM20_plant: Plant sp 97.6 0.0006 1.3E-08 60.6 10.5 88 372-459 7-115 (186)
238 KOG0530 Protein farnesyltransf 97.6 0.02 4.3E-07 54.0 20.7 115 372-486 59-175 (318)
239 PF02259 FAT: FAT domain; Int 97.6 0.035 7.5E-07 57.9 25.9 63 491-553 146-212 (352)
240 KOG2610 Uncharacterized conser 97.6 0.0086 1.9E-07 58.3 18.6 119 466-587 111-234 (491)
241 PF04184 ST7: ST7 protein; In 97.6 0.0086 1.9E-07 61.8 19.6 193 428-635 172-385 (539)
242 KOG4642 Chaperone-dependent E3 97.5 0.00078 1.7E-08 62.2 10.5 103 365-467 19-126 (284)
243 KOG0985 Vesicle coat protein c 97.5 0.25 5.4E-06 55.4 37.5 300 346-686 1104-1441(1666)
244 PF10300 DUF3808: Protein of u 97.5 0.053 1.1E-06 58.4 26.2 159 498-689 195-376 (468)
245 PF13424 TPR_12: Tetratricopep 97.5 0.00015 3.2E-09 56.8 5.1 61 493-553 7-74 (78)
246 PF13281 DUF4071: Domain of un 97.5 0.016 3.4E-07 59.1 20.7 169 457-629 140-338 (374)
247 PF00515 TPR_1: Tetratricopept 97.5 0.00017 3.6E-09 45.9 4.4 34 660-693 1-34 (34)
248 PF10345 Cohesin_load: Cohesin 97.5 0.3 6.4E-06 55.0 46.2 415 260-688 38-605 (608)
249 KOG4507 Uncharacterized conser 97.5 0.011 2.4E-07 61.7 18.6 106 200-305 197-315 (886)
250 COG3118 Thioredoxin domain-con 97.5 0.016 3.5E-07 56.0 18.5 147 424-571 134-284 (304)
251 KOG0530 Protein farnesyltransf 97.4 0.021 4.7E-07 53.8 18.5 167 440-608 59-233 (318)
252 KOG0890 Protein kinase of the 97.4 0.51 1.1E-05 58.1 33.3 308 285-626 1395-1732(2382)
253 PF13431 TPR_17: Tetratricopep 97.4 0.00026 5.7E-09 44.8 3.5 33 649-681 2-34 (34)
254 PF08631 SPO22: Meiosis protei 97.3 0.18 3.8E-06 50.5 25.6 64 493-556 86-152 (278)
255 COG3118 Thioredoxin domain-con 97.3 0.012 2.6E-07 56.8 16.0 139 366-505 144-286 (304)
256 PF13431 TPR_17: Tetratricopep 97.3 0.00025 5.4E-09 44.9 3.2 32 514-545 2-33 (34)
257 KOG4642 Chaperone-dependent E3 97.3 0.002 4.4E-08 59.6 10.1 86 467-552 19-105 (284)
258 COG2976 Uncharacterized protei 97.3 0.028 6E-07 50.8 16.8 116 442-558 70-192 (207)
259 COG2909 MalT ATP-dependent tra 97.3 0.46 1E-05 53.0 31.1 206 422-627 413-649 (894)
260 COG5191 Uncharacterized conser 97.2 0.00067 1.5E-08 64.9 6.0 91 514-607 96-187 (435)
261 PF10300 DUF3808: Protein of u 97.2 0.045 9.7E-07 59.0 20.4 172 377-551 178-373 (468)
262 KOG2300 Uncharacterized conser 97.1 0.41 8.9E-06 49.4 40.3 175 431-611 330-540 (629)
263 KOG4507 Uncharacterized conser 97.1 0.079 1.7E-06 55.6 20.2 90 367-456 224-315 (886)
264 COG2976 Uncharacterized protei 97.0 0.066 1.4E-06 48.5 16.5 117 509-629 70-192 (207)
265 PF13181 TPR_8: Tetratricopept 97.0 0.0012 2.6E-08 41.8 4.1 33 661-693 2-34 (34)
266 PF03704 BTAD: Bacterial trans 96.9 0.037 8E-07 49.3 14.5 60 392-451 64-123 (146)
267 PF07719 TPR_2: Tetratricopept 96.9 0.0028 6.2E-08 40.1 4.9 29 528-556 4-32 (34)
268 PF04910 Tcf25: Transcriptiona 96.8 0.18 3.9E-06 52.2 20.4 62 258-337 9-70 (360)
269 KOG0545 Aryl-hydrocarbon recep 96.8 0.018 3.9E-07 53.6 11.4 68 526-596 231-298 (329)
270 PF03704 BTAD: Bacterial trans 96.8 0.046 9.9E-07 48.7 14.0 113 498-625 13-125 (146)
271 KOG0545 Aryl-hydrocarbon recep 96.8 0.041 8.9E-07 51.3 13.3 102 365-490 187-296 (329)
272 PF04910 Tcf25: Transcriptiona 96.7 0.19 4.2E-06 51.9 19.8 35 418-452 34-68 (360)
273 PF07079 DUF1347: Protein of u 96.7 0.9 2E-05 46.7 31.8 123 427-551 382-521 (549)
274 PF00515 TPR_1: Tetratricopept 96.7 0.0038 8.2E-08 39.5 4.5 31 493-523 3-33 (34)
275 KOG3783 Uncharacterized conser 96.7 0.26 5.5E-06 51.8 19.8 247 407-693 250-524 (546)
276 KOG0376 Serine-threonine phosp 96.7 0.003 6.6E-08 64.8 5.9 106 465-570 11-117 (476)
277 KOG0376 Serine-threonine phosp 96.6 0.0032 6.9E-08 64.6 5.8 107 429-535 9-116 (476)
278 PRK13184 pknD serine/threonine 96.6 0.88 1.9E-05 52.7 25.7 341 258-624 490-868 (932)
279 KOG1464 COP9 signalosome, subu 96.6 0.19 4.2E-06 47.7 16.7 205 367-571 38-284 (440)
280 smart00386 HAT HAT (Half-A-TPR 96.5 0.0043 9.2E-08 38.8 3.8 31 166-196 1-31 (33)
281 PF10345 Cohesin_load: Cohesin 96.5 2.1 4.6E-05 48.2 46.9 166 168-333 37-251 (608)
282 KOG0890 Protein kinase of the 96.5 3.8 8.2E-05 51.1 41.9 239 389-633 1669-1965(2382)
283 COG2909 MalT ATP-dependent tra 96.5 2.1 4.5E-05 48.1 37.2 248 295-551 398-685 (894)
284 PF13174 TPR_6: Tetratricopept 96.4 0.0062 1.4E-07 38.1 4.1 33 661-693 1-33 (33)
285 PF07079 DUF1347: Protein of u 96.4 1.5 3.2E-05 45.3 37.8 121 258-386 21-158 (549)
286 KOG2041 WD40 repeat protein [G 96.3 0.38 8.2E-06 51.8 18.3 34 517-550 844-877 (1189)
287 PF13176 TPR_7: Tetratricopept 96.2 0.0043 9.2E-08 39.9 2.6 31 662-692 1-31 (36)
288 COG5159 RPN6 26S proteasome re 95.9 1.7 3.7E-05 41.9 24.1 269 282-593 12-316 (421)
289 KOG1308 Hsp70-interacting prot 95.9 0.0079 1.7E-07 58.9 4.0 84 471-554 127-211 (377)
290 PF08311 Mad3_BUB1_I: Mad3/BUB 95.9 0.27 5.9E-06 42.2 12.9 101 232-334 4-126 (126)
291 KOG1464 COP9 signalosome, subu 95.8 0.42 9.2E-06 45.4 14.6 100 564-694 150-265 (440)
292 KOG2422 Uncharacterized conser 95.8 1.2 2.6E-05 47.3 19.0 173 258-456 253-451 (665)
293 PF13181 TPR_8: Tetratricopept 95.7 0.019 4.1E-07 36.2 4.1 29 528-556 4-32 (34)
294 KOG2422 Uncharacterized conser 95.7 0.86 1.9E-05 48.3 17.8 157 367-523 249-451 (665)
295 KOG1308 Hsp70-interacting prot 95.7 0.013 2.9E-07 57.4 4.5 87 503-592 126-212 (377)
296 PF13174 TPR_6: Tetratricopept 95.6 0.022 4.8E-07 35.5 4.1 30 528-557 3-32 (33)
297 KOG0551 Hsp90 co-chaperone CNS 95.6 0.071 1.5E-06 52.2 8.8 92 464-555 87-183 (390)
298 COG0790 FOG: TPR repeat, SEL1 95.5 3 6.5E-05 42.0 21.3 161 436-603 53-230 (292)
299 KOG2041 WD40 repeat protein [G 95.4 0.36 7.9E-06 51.9 14.0 181 484-685 685-877 (1189)
300 KOG1463 26S proteasome regulat 95.4 3.3 7.1E-05 41.1 22.8 163 428-593 132-318 (411)
301 smart00028 TPR Tetratricopepti 95.4 0.027 5.9E-07 34.4 3.9 33 661-693 2-34 (34)
302 KOG0551 Hsp90 co-chaperone CNS 95.2 0.53 1.1E-05 46.4 13.4 99 491-592 81-183 (390)
303 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.035 7.6E-07 39.0 4.1 36 661-696 2-37 (53)
304 PRK10941 hypothetical protein; 95.2 0.22 4.8E-06 48.9 11.1 73 495-567 185-257 (269)
305 KOG3824 Huntingtin interacting 95.1 0.081 1.8E-06 51.0 7.6 109 463-571 121-235 (472)
306 smart00386 HAT HAT (Half-A-TPR 95.1 0.032 6.9E-07 34.7 3.4 28 199-226 4-31 (33)
307 KOG1538 Uncharacterized conser 95.0 0.95 2.1E-05 48.4 15.6 24 460-483 806-829 (1081)
308 KOG3807 Predicted membrane pro 95.0 4.2 9E-05 40.1 18.9 26 579-604 379-404 (556)
309 PF09613 HrpB1_HrpK: Bacterial 94.9 2.1 4.5E-05 38.0 15.2 75 398-472 18-92 (160)
310 PF08631 SPO22: Meiosis protei 94.9 4.6 9.9E-05 40.3 28.1 109 308-421 36-152 (278)
311 PF14561 TPR_20: Tetratricopep 94.9 0.39 8.4E-06 38.4 9.8 64 376-439 8-73 (90)
312 KOG3824 Huntingtin interacting 94.8 0.067 1.5E-06 51.6 6.3 66 367-432 127-192 (472)
313 COG1747 Uncharacterized N-term 94.8 6.3 0.00014 41.5 22.5 181 385-570 61-250 (711)
314 PF09613 HrpB1_HrpK: Bacterial 94.7 2.4 5.3E-05 37.6 15.0 77 495-571 14-90 (160)
315 KOG1538 Uncharacterized conser 94.7 3.7 8.1E-05 44.2 18.7 28 346-383 585-612 (1081)
316 KOG1550 Extracellular protein 94.6 9.2 0.0002 42.4 27.7 279 371-692 227-541 (552)
317 PF08311 Mad3_BUB1_I: Mad3/BUB 94.6 0.76 1.7E-05 39.5 11.7 75 611-687 41-126 (126)
318 PRK10941 hypothetical protein; 94.6 0.42 9E-06 47.0 11.3 70 528-600 184-253 (269)
319 PF14561 TPR_20: Tetratricopep 94.6 0.65 1.4E-05 37.1 10.4 43 446-488 10-52 (90)
320 KOG1550 Extracellular protein 94.4 10 0.00023 42.0 26.5 212 371-593 308-540 (552)
321 PRK15180 Vi polysaccharide bio 94.3 0.25 5.5E-06 50.7 9.3 124 502-628 300-423 (831)
322 PF09986 DUF2225: Uncharacteri 94.3 0.35 7.6E-06 45.9 9.9 93 575-690 90-195 (214)
323 PF13176 TPR_7: Tetratricopept 94.3 0.076 1.6E-06 34.0 3.8 23 528-550 2-24 (36)
324 PRK15180 Vi polysaccharide bio 94.1 0.92 2E-05 46.8 12.6 123 401-523 300-423 (831)
325 PF04781 DUF627: Protein of un 93.7 0.74 1.6E-05 37.8 9.2 44 510-553 63-106 (111)
326 PF10602 RPN7: 26S proteasome 93.6 0.98 2.1E-05 41.5 11.2 59 427-485 39-100 (177)
327 PF10602 RPN7: 26S proteasome 93.4 1.3 2.8E-05 40.7 11.5 96 460-555 38-143 (177)
328 PF02184 HAT: HAT (Half-A-TPR) 93.1 0.21 4.5E-06 30.6 3.8 29 473-501 2-30 (32)
329 KOG3783 Uncharacterized conser 92.9 14 0.0003 39.4 19.2 237 373-628 250-523 (546)
330 PF04053 Coatomer_WDAD: Coatom 92.9 2.8 6.1E-05 44.7 14.8 152 436-620 273-426 (443)
331 TIGR02561 HrpB1_HrpK type III 92.9 6 0.00013 34.6 14.0 69 402-470 22-90 (153)
332 PF04781 DUF627: Protein of un 92.9 0.97 2.1E-05 37.2 8.6 44 544-590 63-106 (111)
333 COG0790 FOG: TPR repeat, SEL1 92.6 12 0.00027 37.5 25.3 166 367-566 52-230 (292)
334 KOG3807 Predicted membrane pro 92.6 11 0.00023 37.4 16.7 106 226-338 197-306 (556)
335 smart00028 TPR Tetratricopepti 92.5 0.23 5E-06 30.0 3.9 28 528-555 4-31 (34)
336 COG3914 Spy Predicted O-linked 92.4 2.5 5.4E-05 45.2 13.0 125 543-694 49-176 (620)
337 COG4649 Uncharacterized protei 92.4 7.9 0.00017 34.7 16.6 132 402-534 70-209 (221)
338 TIGR02561 HrpB1_HrpK type III 92.3 7 0.00015 34.2 13.6 71 501-571 20-90 (153)
339 COG4941 Predicted RNA polymera 92.2 6.7 0.00015 39.0 14.8 180 373-561 213-401 (415)
340 PF04053 Coatomer_WDAD: Coatom 92.1 6.3 0.00014 42.1 16.1 98 367-482 329-426 (443)
341 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 0.96 2.1E-05 31.9 6.7 25 500-524 10-34 (53)
342 COG5159 RPN6 26S proteasome re 92.0 12 0.00027 36.2 20.4 197 365-592 12-236 (421)
343 PF09986 DUF2225: Uncharacteri 92.0 1.4 3E-05 41.8 10.1 30 525-554 165-194 (214)
344 COG4976 Predicted methyltransf 92.0 0.22 4.7E-06 46.3 4.3 56 503-558 7-62 (287)
345 COG3914 Spy Predicted O-linked 91.9 3.1 6.8E-05 44.5 13.2 96 502-600 78-180 (620)
346 PF13374 TPR_10: Tetratricopep 91.9 0.36 7.9E-06 31.8 4.5 29 661-689 3-31 (42)
347 KOG0529 Protein geranylgeranyl 91.6 9.6 0.00021 39.2 15.7 137 506-642 90-241 (421)
348 PF07720 TPR_3: Tetratricopept 91.6 0.62 1.3E-05 29.7 4.8 34 660-693 1-36 (36)
349 COG4649 Uncharacterized protei 91.3 11 0.00023 33.9 16.1 133 368-500 70-209 (221)
350 KOG0529 Protein geranylgeranyl 91.0 12 0.00027 38.4 15.8 167 503-672 40-241 (421)
351 KOG1463 26S proteasome regulat 90.9 19 0.00041 36.1 19.6 258 367-627 15-318 (411)
352 COG4976 Predicted methyltransf 90.9 0.42 9.2E-06 44.4 5.0 57 367-423 6-62 (287)
353 PF02184 HAT: HAT (Half-A-TPR) 90.7 0.38 8.3E-06 29.4 3.1 28 289-317 3-30 (32)
354 PF12968 DUF3856: Domain of Un 90.6 9 0.0002 31.9 13.0 89 575-689 22-129 (144)
355 PRK11619 lytic murein transgly 90.3 36 0.00079 38.4 36.6 180 436-621 253-464 (644)
356 KOG3364 Membrane protein invol 89.8 3.3 7.1E-05 35.4 8.9 75 558-632 31-107 (149)
357 PF07721 TPR_4: Tetratricopept 89.8 0.47 1E-05 27.7 3.0 26 660-685 1-26 (26)
358 KOG0889 Histone acetyltransfer 89.7 84 0.0018 41.8 31.2 105 596-701 2812-2927(3550)
359 KOG2581 26S proteasome regulat 89.6 7.3 0.00016 39.8 12.7 103 560-693 170-280 (493)
360 PF11207 DUF2989: Protein of u 89.6 5.9 0.00013 36.7 11.2 76 579-681 123-199 (203)
361 PRK11619 lytic murein transgly 89.4 43 0.00092 37.9 31.9 295 367-688 44-374 (644)
362 PF11207 DUF2989: Protein of u 89.3 3.9 8.5E-05 37.8 9.9 71 473-544 121-197 (203)
363 KOG3364 Membrane protein invol 89.0 10 0.00022 32.5 11.2 70 459-528 33-108 (149)
364 COG3629 DnrI DNA-binding trans 88.2 4.7 0.0001 39.7 10.3 62 391-452 154-215 (280)
365 COG2912 Uncharacterized conser 87.9 4.9 0.00011 39.0 10.0 67 500-566 190-256 (269)
366 PF04190 DUF410: Protein of un 87.8 30 0.00064 34.1 21.2 81 457-554 89-170 (260)
367 COG3629 DnrI DNA-binding trans 87.7 3.2 7E-05 40.8 8.9 62 425-486 154-215 (280)
368 KOG0889 Histone acetyltransfer 87.3 1E+02 0.0022 41.1 22.8 42 660-701 2812-2853(3550)
369 PRK12798 chemotaxis protein; R 85.3 51 0.0011 34.4 25.0 164 425-592 113-287 (421)
370 KOG1839 Uncharacterized protei 84.9 6.9 0.00015 46.1 10.9 16 119-134 532-547 (1236)
371 PF15015 NYD-SP12_N: Spermatog 84.7 19 0.00042 37.0 12.5 122 342-469 168-310 (569)
372 KOG1310 WD40 repeat protein [G 84.4 3.5 7.6E-05 43.4 7.5 85 406-490 390-477 (758)
373 COG5536 BET4 Protein prenyltra 84.3 8.2 0.00018 37.3 9.3 127 509-636 50-190 (328)
374 PF10516 SHNi-TPR: SHNi-TPR; 83.2 2.5 5.4E-05 27.4 3.8 30 661-690 2-31 (38)
375 KOG4814 Uncharacterized conser 83.1 13 0.00027 40.4 11.0 88 467-554 363-457 (872)
376 PF13374 TPR_10: Tetratricopep 82.5 3.1 6.7E-05 27.1 4.4 27 527-553 4-30 (42)
377 KOG1310 WD40 repeat protein [G 81.9 5 0.00011 42.3 7.4 83 508-593 391-476 (758)
378 KOG4814 Uncharacterized conser 81.5 89 0.0019 34.3 31.6 91 249-339 357-460 (872)
379 PF07721 TPR_4: Tetratricopept 81.5 2.2 4.8E-05 24.8 2.9 21 528-548 4-24 (26)
380 COG2912 Uncharacterized conser 80.9 12 0.00027 36.3 9.3 62 534-598 190-251 (269)
381 PF12862 Apc5: Anaphase-promot 80.8 4.9 0.00011 32.4 5.8 68 607-695 9-76 (94)
382 PF12862 Apc5: Anaphase-promot 80.5 12 0.00025 30.2 7.9 51 436-486 10-69 (94)
383 KOG1839 Uncharacterized protei 80.0 16 0.00034 43.3 11.3 134 420-553 969-1127(1236)
384 PRK13184 pknD serine/threonine 79.8 1.4E+02 0.003 35.4 28.1 93 287-393 489-589 (932)
385 KOG0276 Vesicle coat complex C 79.1 17 0.00038 39.2 10.3 72 259-335 623-694 (794)
386 KOG0687 26S proteasome regulat 78.8 74 0.0016 31.9 13.7 100 424-523 104-213 (393)
387 PF09797 NatB_MDM20: N-acetylt 78.6 89 0.0019 32.6 24.2 46 506-551 198-243 (365)
388 PF09205 DUF1955: Domain of un 78.5 42 0.00092 28.8 10.9 122 363-488 9-150 (161)
389 smart00777 Mad3_BUB1_I Mad3/BU 78.2 43 0.00092 28.6 11.6 25 525-549 99-123 (125)
390 PF12854 PPR_1: PPR repeat 78.1 5.6 0.00012 24.9 4.2 27 659-685 6-32 (34)
391 smart00777 Mad3_BUB1_I Mad3/BU 77.8 40 0.00087 28.8 10.5 28 658-685 97-124 (125)
392 PRK12798 chemotaxis protein; R 77.7 95 0.0021 32.4 23.8 214 367-588 92-321 (421)
393 COG3947 Response regulator con 77.0 53 0.0012 32.3 12.0 54 498-551 286-339 (361)
394 PF07720 TPR_3: Tetratricopept 76.7 9.1 0.0002 24.4 4.8 20 528-547 4-23 (36)
395 TIGR03504 FimV_Cterm FimV C-te 75.8 5.7 0.00012 26.7 3.9 25 664-688 3-27 (44)
396 smart00299 CLH Clathrin heavy 75.6 54 0.0012 28.5 14.9 32 438-469 21-52 (140)
397 PF12968 DUF3856: Domain of Un 75.2 48 0.0011 27.8 12.9 23 463-485 60-82 (144)
398 PF04190 DUF410: Protein of un 75.2 88 0.0019 30.8 20.8 61 388-448 47-114 (260)
399 PF13041 PPR_2: PPR repeat fam 75.1 15 0.00033 25.2 6.2 27 460-486 5-31 (50)
400 KOG1920 IkappaB kinase complex 73.9 2E+02 0.0043 34.3 26.2 106 367-486 919-1027(1265)
401 COG4455 ImpE Protein of avirul 73.7 24 0.00053 33.0 8.6 55 402-456 13-67 (273)
402 KOG2581 26S proteasome regulat 73.7 1.2E+02 0.0025 31.5 17.6 62 529-595 213-280 (493)
403 COG4455 ImpE Protein of avirul 73.5 23 0.00049 33.2 8.3 118 501-630 11-139 (273)
404 PF11817 Foie-gras_1: Foie gra 73.2 95 0.0021 30.3 15.3 59 492-550 179-243 (247)
405 COG3947 Response regulator con 73.0 17 0.00036 35.6 7.7 54 396-449 285-338 (361)
406 KOG4014 Uncharacterized conser 72.4 77 0.0017 28.9 15.0 48 576-625 182-233 (248)
407 PF13041 PPR_2: PPR repeat fam 72.1 22 0.00048 24.3 6.5 26 562-590 6-31 (50)
408 TIGR03504 FimV_Cterm FimV C-te 72.0 8.3 0.00018 25.9 3.9 25 428-452 3-27 (44)
409 PF10516 SHNi-TPR: SHNi-TPR; 71.9 8.3 0.00018 25.0 3.8 25 494-518 4-28 (38)
410 PF13226 DUF4034: Domain of un 71.1 1.1E+02 0.0024 30.2 14.4 139 398-548 8-156 (277)
411 PRK15338 type III secretion sy 71.0 90 0.002 32.0 12.7 145 477-627 108-271 (372)
412 smart00299 CLH Clathrin heavy 71.0 70 0.0015 27.8 15.1 33 470-502 19-52 (140)
413 PF12854 PPR_1: PPR repeat 70.6 10 0.00022 23.7 4.0 13 467-479 16-28 (34)
414 PF11817 Foie-gras_1: Foie gra 70.5 93 0.002 30.3 12.8 77 542-621 155-243 (247)
415 PF09670 Cas_Cas02710: CRISPR- 70.4 89 0.0019 32.8 13.3 57 397-453 138-198 (379)
416 KOG2063 Vacuolar assembly/sort 69.7 2.3E+02 0.0049 33.2 21.2 26 526-551 685-710 (877)
417 KOG2114 Vacuolar assembly/sort 69.3 2.1E+02 0.0046 32.7 17.6 200 367-590 345-549 (933)
418 KOG2114 Vacuolar assembly/sort 69.2 1.5E+02 0.0032 33.9 14.6 204 433-688 343-549 (933)
419 PF10255 Paf67: RNA polymerase 68.7 52 0.0011 34.5 10.8 124 428-551 126-267 (404)
420 KOG2066 Vacuolar assembly/sort 67.5 2.2E+02 0.0048 32.3 21.3 51 648-699 636-695 (846)
421 PF00244 14-3-3: 14-3-3 protei 67.4 1.2E+02 0.0027 29.2 14.7 48 578-625 142-198 (236)
422 PF09205 DUF1955: Domain of un 67.2 83 0.0018 27.1 13.6 34 429-462 7-40 (161)
423 PF04097 Nic96: Nup93/Nic96; 67.0 2.3E+02 0.0049 32.1 24.7 22 394-415 262-283 (613)
424 PF15015 NYD-SP12_N: Spermatog 66.7 83 0.0018 32.7 11.3 88 397-484 183-288 (569)
425 KOG4279 Serine/threonine prote 66.3 2.3E+02 0.005 32.0 15.3 115 390-505 201-334 (1226)
426 PF09670 Cas_Cas02710: CRISPR- 65.5 1.3E+02 0.0028 31.6 13.3 61 427-487 134-198 (379)
427 PF10373 EST1_DNA_bind: Est1 D 64.6 26 0.00057 34.7 7.9 61 477-537 1-62 (278)
428 KOG0276 Vesicle coat complex C 64.4 1.8E+02 0.0039 32.0 13.6 46 367-417 648-693 (794)
429 COG3014 Uncharacterized protei 62.5 1.8E+02 0.0039 29.4 13.4 27 460-486 127-153 (449)
430 COG1747 Uncharacterized N-term 62.4 2.3E+02 0.0049 30.5 27.0 219 457-693 65-292 (711)
431 PF11846 DUF3366: Domain of un 62.4 25 0.00054 32.8 6.8 47 476-522 129-175 (193)
432 PRK15338 type III secretion sy 61.6 1.4E+02 0.003 30.8 11.9 117 294-418 110-228 (372)
433 PF10579 Rapsyn_N: Rapsyn N-te 60.9 69 0.0015 24.7 7.3 45 503-547 18-65 (80)
434 KOG4279 Serine/threonine prote 60.5 27 0.00058 38.8 7.0 169 457-629 200-399 (1226)
435 KOG2063 Vacuolar assembly/sort 60.2 3.4E+02 0.0073 31.8 19.6 28 310-337 507-534 (877)
436 PF12739 TRAPPC-Trs85: ER-Golg 58.5 2.5E+02 0.0055 29.8 16.3 29 663-691 373-401 (414)
437 PF01535 PPR: PPR repeat; Int 58.5 17 0.00038 21.4 3.4 28 662-689 2-29 (31)
438 PF15297 CKAP2_C: Cytoskeleton 58.2 32 0.0007 34.7 6.8 47 290-336 120-169 (353)
439 PF01535 PPR: PPR repeat; Int 57.2 18 0.0004 21.3 3.4 26 599-624 3-28 (31)
440 KOG2066 Vacuolar assembly/sort 56.8 3.5E+02 0.0075 30.9 22.2 51 367-417 367-419 (846)
441 PF10579 Rapsyn_N: Rapsyn N-te 56.6 82 0.0018 24.3 7.1 45 575-619 19-66 (80)
442 PF12739 TRAPPC-Trs85: ER-Golg 56.3 2.8E+02 0.006 29.6 16.0 29 600-628 374-402 (414)
443 COG4941 Predicted RNA polymera 56.2 2.3E+02 0.0051 28.7 17.8 181 406-598 212-401 (415)
444 smart00671 SEL1 Sel1-like repe 56.1 28 0.00061 21.5 4.2 30 661-690 2-35 (36)
445 PF11846 DUF3366: Domain of un 55.3 38 0.00083 31.5 6.7 34 659-692 143-176 (193)
446 PHA02537 M terminase endonucle 55.1 46 0.00099 31.9 7.0 23 608-630 190-212 (230)
447 PF14863 Alkyl_sulf_dimr: Alky 53.8 87 0.0019 27.4 8.0 49 491-539 70-118 (141)
448 PHA02537 M terminase endonucle 53.8 66 0.0014 30.8 7.8 34 661-694 170-212 (230)
449 PF10373 EST1_DNA_bind: Est1 D 53.8 45 0.00097 33.1 7.4 62 510-571 1-62 (278)
450 PF04348 LppC: LppC putative l 52.8 4.6 9.9E-05 44.4 0.0 86 463-548 29-121 (536)
451 PF04348 LppC: LppC putative l 51.8 4.8 0.0001 44.3 0.0 90 425-514 25-121 (536)
452 PF14929 TAF1_subA: TAF RNA Po 51.3 3.8E+02 0.0082 29.6 18.1 179 370-549 272-479 (547)
453 COG5536 BET4 Protein prenyltra 51.1 2.4E+02 0.0052 27.8 11.0 131 508-638 91-235 (328)
454 TIGR00756 PPR pentatricopeptid 50.3 35 0.00075 20.6 3.9 24 462-485 4-27 (35)
455 TIGR00756 PPR pentatricopeptid 50.2 33 0.0007 20.7 3.8 28 598-625 2-29 (35)
456 COG3014 Uncharacterized protei 49.1 3E+02 0.0066 27.9 13.8 35 659-693 212-246 (449)
457 KOG0686 COP9 signalosome, subu 48.2 3.5E+02 0.0075 28.3 15.5 94 526-622 151-255 (466)
458 KOG1920 IkappaB kinase complex 47.8 5.8E+02 0.013 30.8 29.4 21 156-176 681-701 (1265)
459 TIGR03362 VI_chp_7 type VI sec 47.1 3.2E+02 0.0069 27.6 16.9 55 499-553 221-278 (301)
460 KOG4318 Bicoid mRNA stability 46.7 5.3E+02 0.012 30.1 25.6 107 395-503 712-826 (1088)
461 PF10255 Paf67: RNA polymerase 46.6 3.8E+02 0.0082 28.3 16.1 58 496-553 127-192 (404)
462 PF08238 Sel1: Sel1 repeat; I 46.1 43 0.00093 21.1 4.0 30 660-689 1-37 (39)
463 cd02680 MIT_calpain7_2 MIT: do 46.1 35 0.00076 26.1 3.8 18 503-520 18-35 (75)
464 PF09797 NatB_MDM20: N-acetylt 45.7 3.7E+02 0.008 28.0 25.2 43 578-620 199-241 (365)
465 KOG4014 Uncharacterized conser 45.6 2.4E+02 0.0053 25.8 15.7 31 659-689 199-233 (248)
466 KOG4422 Uncharacterized conser 45.3 3.9E+02 0.0085 28.1 39.7 345 250-628 214-593 (625)
467 PF13226 DUF4034: Domain of un 43.0 3.5E+02 0.0075 26.9 12.2 129 366-508 10-150 (277)
468 TIGR02996 rpt_mate_G_obs repea 42.5 80 0.0017 21.0 4.4 26 415-440 7-32 (42)
469 PF13812 PPR_3: Pentatricopept 42.4 68 0.0015 19.3 4.3 20 431-450 8-27 (34)
470 cd02682 MIT_AAA_Arch MIT: doma 42.1 96 0.0021 23.7 5.6 14 261-274 5-18 (75)
471 TIGR02996 rpt_mate_G_obs repea 40.1 77 0.0017 21.0 4.1 32 446-477 4-35 (42)
472 KOG0686 COP9 signalosome, subu 39.3 4.8E+02 0.01 27.4 15.3 93 460-552 152-256 (466)
473 cd02680 MIT_calpain7_2 MIT: do 38.9 59 0.0013 24.8 4.1 36 145-183 2-37 (75)
474 PRK15490 Vi polysaccharide bio 38.8 1.6E+02 0.0036 32.5 9.0 79 503-586 20-98 (578)
475 cd00280 TRFH Telomeric Repeat 38.7 3.2E+02 0.0069 25.2 9.2 24 463-486 116-139 (200)
476 PRK15490 Vi polysaccharide bio 38.5 1.4E+02 0.003 33.0 8.4 80 401-482 19-98 (578)
477 cd02682 MIT_AAA_Arch MIT: doma 38.1 1.5E+02 0.0033 22.6 6.2 46 230-279 4-49 (75)
478 PF04090 RNA_pol_I_TF: RNA pol 37.8 3.5E+02 0.0075 25.3 11.0 61 393-453 44-105 (199)
479 PF04212 MIT: MIT (microtubule 36.7 91 0.002 23.2 4.9 19 367-385 16-34 (69)
480 PF00244 14-3-3: 14-3-3 protei 36.5 4E+02 0.0087 25.7 15.7 46 542-590 143-197 (236)
481 PF15297 CKAP2_C: Cytoskeleton 36.3 1.8E+02 0.0039 29.7 8.1 49 441-489 120-171 (353)
482 PF10037 MRP-S27: Mitochondria 35.8 3.8E+02 0.0082 28.6 10.9 99 421-520 63-167 (429)
483 PF14863 Alkyl_sulf_dimr: Alky 35.0 1.4E+02 0.0031 26.1 6.5 46 427-472 73-118 (141)
484 cd00280 TRFH Telomeric Repeat 34.5 3.7E+02 0.0081 24.8 9.2 62 372-434 85-154 (200)
485 cd07615 BAR_Endophilin_A3 The 34.3 1.9E+02 0.0042 27.6 7.7 151 55-238 59-211 (223)
486 COG5187 RPN7 26S proteasome re 33.0 5E+02 0.011 25.8 12.8 101 390-490 115-224 (412)
487 COG4259 Uncharacterized protei 32.5 2.6E+02 0.0056 22.7 6.7 34 491-524 72-105 (121)
488 PF10037 MRP-S27: Mitochondria 32.2 5.6E+02 0.012 27.3 11.4 100 386-487 62-167 (429)
489 cd02683 MIT_1 MIT: domain cont 31.8 97 0.0021 23.8 4.4 19 367-385 17-35 (77)
490 KOG0687 26S proteasome regulat 31.4 5.7E+02 0.012 25.9 13.3 100 458-557 104-213 (393)
491 cd02681 MIT_calpain7_1 MIT: do 29.5 1.3E+02 0.0028 23.1 4.7 19 367-385 17-35 (76)
492 KOG1497 COP9 signalosome, subu 29.2 6.1E+02 0.013 25.6 17.0 95 526-624 104-212 (399)
493 COG5187 RPN7 26S proteasome re 28.6 6E+02 0.013 25.3 15.4 101 424-524 115-225 (412)
494 COG1659 Uncharacterized protei 28.6 23 0.00049 32.6 0.5 17 24-40 4-20 (267)
495 PF15469 Sec5: Exocyst complex 28.5 3.6E+02 0.0077 24.7 8.5 36 217-252 143-178 (182)
496 cd02677 MIT_SNX15 MIT: domain 28.4 2.4E+02 0.0051 21.6 5.9 19 367-385 17-35 (75)
497 cd02684 MIT_2 MIT: domain cont 28.3 1.1E+02 0.0025 23.3 4.2 19 367-385 17-35 (75)
498 TIGR02710 CRISPR-associated pr 27.7 7.3E+02 0.016 26.0 13.3 51 399-449 139-196 (380)
499 PF12826 HHH_2: Helix-hairpin- 27.3 24 0.00052 26.0 0.4 31 17-48 19-49 (64)
500 PF12921 ATP13: Mitochondrial 26.9 4E+02 0.0087 22.8 9.5 76 278-356 7-98 (126)
No 1
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.6e-139 Score=1044.60 Aligned_cols=697 Identities=58% Similarity=0.954 Sum_probs=682.2
Q ss_pred chHHHHHHHHhcCCChhhhhhhhhhhccCCCHHHhccCcccccchhhhhhh-cccccccCchhHHHhhhhhhccccccCC
Q 040951 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRSNKRK-RFESFVPVPDSLLQKARQEQQHVIALDP 80 (701)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~f~~~k~~l~~~~~~~w~~~p~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (701)
++++++|+||.+||||++||+||||+|++||+|||.+|||+||+++||||+ |.|+|||+|||+++++.+.++.++++|+
T Consensus 121 k~ke~iE~y~~e~pkv~~QFaDLKr~LatvTe~EW~~IPEvgD~r~r~krn~r~Ekf~p~pds~~~~~~~~~~~~~~ld~ 200 (913)
T KOG0495|consen 121 KLKEEIEKYRKENPKVQQQFADLKRKLATVTEDEWDSIPEVGDYRNRNKRNPRAEKFTPVPDSLLASAINENEDSSSLDP 200 (913)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHhhcCHHHhhcCCcccchhhhhhccchhhhcCCCchHHHHHhcccCccccccCc
Confidence 678999999999999999999999999999999999999999999999998 8899999999999999999999999998
Q ss_pred CcccC-CCCcccccchhhhhhhhhhhhhhhcccccCCCCCccccChhhhHHhhhhcccccchhhhcHHHHHHHHHH----
Q 040951 81 SSRAA-GGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRA---- 155 (701)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~r~~~l~~~ld~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~d~~~ar~ll~~---- 155 (701)
.++.. +-..+.+|..++||+||++||+.+|++++|+++|||++||+||||+|+++++.++++++||+|||.||+|
T Consensus 201 ~~g~etp~~~g~~t~~~kig~ar~~l~~~kl~qvsdsvtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvret 280 (913)
T KOG0495|consen 201 EGGLETPLQSGQMTPGVKIGQARNTLMDMKLNQVSDSVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRET 280 (913)
T ss_pred cCCccCCCcCCCcCccchhhHHHHHHHhhhhhhccccCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhc
Confidence 74332 1112357788899999999999999999999999999999999999999999999999999999999999
Q ss_pred --------HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhcCcchHHHHHHHHHHhCCCcHHHHHHHHHccc
Q 040951 156 --------IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH 227 (701)
Q Consensus 156 --------i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~ 227 (701)
|++|||||.+|++..|+.+|++||+.||+|+|+||+++||+.++.|+.++++|++++|+||.+|++++++|.
T Consensus 281 nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~ 360 (913)
T KOG0495|consen 281 NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLES 360 (913)
T ss_pred CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCH
Q 040951 228 DKANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKER 307 (701)
Q Consensus 228 ~~~~a~~~l~kal~~~P~~~~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~ 307 (701)
+...+.+|++|||+.+|+|+.||++.+++++.++|+.++.+|+++||.+.++|++|++++.|++|+++++++++..|+++
T Consensus 361 ~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~ 440 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDR 440 (913)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC--------------------------
Q 040951 308 AIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS-------------------------- 361 (701)
Q Consensus 308 ~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~-------------------------- 361 (701)
.+|+..+.+++.+|+.+++.+++.+++..+..+++.+.++.|+..|+.|+..|+
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 999999999999999999999999999999999999999999999999999988
Q ss_pred -cHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 040951 362 -DAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDV 440 (701)
Q Consensus 362 -~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~ 440 (701)
+++.+...+.++.|+.+|..+|+.+|....+|...+.+...+|..++...+|++++..+|..+.+|+|+++.++..||+
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 040951 441 PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKR 520 (701)
Q Consensus 441 ~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 520 (701)
..|+.++.++++.+|++.++|+...++...+.++++|+.+|.++....|+.++|+..+.+++.+++.++|+.+++++++.
T Consensus 601 ~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 601 PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 521 FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 521 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
+|.++++|+++|+++.++++.+.|++.|..+++.||.++++|+.++.+.+. .|+..+|+.+++++..+||+++.+|+
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk---~~~~~rAR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK---DGQLVRARSILDRARLKNPKNALLWL 757 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH---hcchhhHHHHHHHHHhcCCCcchhHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHH
Q 040951 601 ATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKAR 680 (701)
Q Consensus 601 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 680 (701)
..++++.+.|+.++|..++.+||+.||+++.+|...|+++.+.++++.+.+||++|.+||.++..+|.+||...++++|+
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcccccccC
Q 040951 681 NWFNKAVSLDPDTGDFWALYY 701 (701)
Q Consensus 681 ~~~~~al~~~p~~~d~w~~~y 701 (701)
+||+||++.+|++||+|+|||
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred HHHHHHHccCCccchHHHHHH
Confidence 999999999999999999997
No 2
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.4e-54 Score=433.92 Aligned_cols=578 Identities=24% Similarity=0.388 Sum_probs=514.5
Q ss_pred cchhhhhhhhhhhhhhhcccccCCCCCccccChhhhHHhhhhcccccchhhhcHHHHHHHHHH------------HHHHH
Q 040951 93 TDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRA------------IQAAR 160 (701)
Q Consensus 93 ~~~~~~~~~r~~~l~~~ld~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~d~~~ar~ll~~------------i~~ar 160 (701)
.||.+|-.||-.+-+ +....+..|.||+++.+ .++..|.+..||.++.. ++++|
T Consensus 262 ~dl~DikKaR~llKS---------vretnP~hp~gWIAsAr-----LEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR 327 (913)
T KOG0495|consen 262 GDLEDIKKARLLLKS---------VRETNPKHPPGWIASAR-----LEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR 327 (913)
T ss_pred CcHHHHHHHHHHHHH---------HHhcCCCCCchHHHHHH-----HHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh
Confidence 378888888865544 33345678999999999 37889999999999998 99999
Q ss_pred HHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhcCc-chHHHHHHHHHHhCCCcHHHHHHHHHcccCHHHHHHHHHHH
Q 040951 161 LEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARP-DEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMA 239 (701)
Q Consensus 161 l~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~~~-~~A~~~l~~al~~~P~~~~lw~~~~~le~~~~~a~~~l~ka 239 (701)
|.. .+.|+.++.++++.+|+|+.+|+.++.|+.. .+.+.++++||++.|+|+.||..+++++...+ |+.++.+|
T Consensus 328 Lhp----~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~d-arilL~rA 402 (913)
T KOG0495|consen 328 LHP----PDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPED-ARILLERA 402 (913)
T ss_pred cCC----hHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHH-HHHHHHHH
Confidence 995 6789999999999999999999999999875 57789999999999999999999999997655 99999999
Q ss_pred HHhcCCCHHHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCC-----CCHHHH
Q 040951 240 LDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLP-----KERAIW 310 (701)
Q Consensus 240 l~~~P~~~~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p-----~~~~~~ 310 (701)
++++|.|..||.++.+++.|+.|++++.++.+..|++.++|+.-+++ |+.+...+++.+++.... -+.+.|
T Consensus 403 veccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 403 VECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 99999999999999999999999999999999999999999999988 567778888888776542 257788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC------------------------cHHHH
Q 040951 311 IAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS------------------------DAEEC 366 (701)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~------------------------~a~~~ 366 (701)
+.-|..++..|..-.+..++...+...-.... ....|+..++.|++.+. .+...
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed--~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e 560 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEED--RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccch--hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 88888888778777777777777765443321 25677777777777766 23344
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
...|..+.-..++++++...|....+|+.++......|+...|+.++.++++.+|++.++|+...++......++.|+.+
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF 525 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 525 (701)
|.++....|. ..+|+..+.+....++.++|+++++++++.+|+ ..+|+.+|+++.+.++.+.|+..|...++.+|+++
T Consensus 641 lakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 641 LAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred HHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 9999998875 889999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
.+|..++.+....|...+|+.+++++.-.+|.+..+|+...+++.+ .|+.+.|...+.+|++.+|.+..+|..-+.+
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR---~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR---AGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHh--cCCC--ccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 040951 606 ESKHGNKKEADSFIAKALQKCPNSGILWAELIK--MVPH--HDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARN 681 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~--~~~~--~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 681 (701)
+-+.++... ...|++.|..++.+....+. +..+ .....-|.++++.+|++.++|..+-.++...|.-+.-.+
T Consensus 797 e~~~~rkTk----s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 797 EPRPQRKTK----SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred ccCcccchH----HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 988877444 44577778888877666443 3333 344556899999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcccccc
Q 040951 682 WFNKAVSLDPDTGDFWAL 699 (701)
Q Consensus 682 ~~~~al~~~p~~~d~w~~ 699 (701)
+|.+.....|.+|+.|..
T Consensus 873 v~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 873 VLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHhccCCCCCcHHHH
Confidence 999999999999999974
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-40 Score=393.56 Aligned_cols=516 Identities=16% Similarity=0.108 Sum_probs=381.5
Q ss_pred hhcHHHHHHHHHHHhhhCCCCHHHHHHHHhh----cCcchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHH
Q 040951 165 AKEEAAARKLITKGCNMCPKNEDVWLEACRL----ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLR 237 (701)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l----~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~ 237 (701)
.|++++|...+.+++..+|.+..+|...+.. +..++|...|.++++.+|++...|...+.... ++..|...++
T Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 342 LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3444444444444444444444443322221 22334444444444444444444443333221 4444445555
Q ss_pred HHHHhcCCCHHHHH----HHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHh----ccChHHHHHHHHHHHHhCCCCHHH
Q 040951 238 MALDEIPDSVRLWK----ALVEISSEEEARILLHRAVECCPLDVELWLALAR----LETYGVARSVLNKARKKLPKERAI 309 (701)
Q Consensus 238 kal~~~P~~~~l~~----~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~----l~~~~~A~~~l~~a~~~~p~~~~~ 309 (701)
++++..|+....+. .++..+++++|..++.+++...|.++..|..++. .|++++|...|+++++..|.+..+
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 501 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA 501 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence 55554444433222 1223335555555555555555555554443332 255666666666666666666666
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 310 WIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTK 389 (701)
Q Consensus 310 ~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 389 (701)
+..++.++...|++++|..+|++++...|.+ ...|..++.. +...|++++|+..+++++..+|.+
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~----------~~~~~~~~~A~~~~~~~~~~~~~~ 566 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGL----------YLRTGNEEEAVAWLEKAAELNPQE 566 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHhCccc
Confidence 6666666666666666666666665554443 3444444433 477888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEF 469 (701)
Q Consensus 390 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~ 469 (701)
...+..++.++...|++++|...+++++...|.++.+|..++.++...|++++|+..|+++++.+|.+..++..++.++.
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA 646 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888999999898888888888888888888888
Q ss_pred HcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040951 470 ENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAY 548 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 548 (701)
..|++++|...|++++...|+ ...+..++.++...|++++|+.+++.+....|.++..+..+|.++...|++++|...|
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888999999999888888887 8888888888888889999999888888888888889999999999999999999999
Q ss_pred HHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 549 QSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 549 ~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
++++...|++ ..+..++.++.. .|++++|...+++++...|+++.++..++.++...|++++|..+|+++++..|+
T Consensus 727 ~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 727 RKALKRAPSS-QNAIKLHRALLA---SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHhhCCCc-hHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 9999998887 677888999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCC---ccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 040951 629 SGILWAELIKMVPH---HDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWAL 699 (701)
Q Consensus 629 ~~~l~~~~~~~~~~---~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~ 699 (701)
++..+...+++... ......+.+++...|+++.++..+|.++...|++++|..+|+++++.+|.+++++..
T Consensus 803 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 876 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH 876 (899)
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 99888876654332 333456788999999999999999999999999999999999999999998777643
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-40 Score=391.89 Aligned_cols=548 Identities=18% Similarity=0.129 Sum_probs=347.0
Q ss_pred hhhhcHHHHHHHHHH------------HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhh----cCcchHHHH
Q 040951 141 SELRDILKARKIVRA------------IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRL----ARPDEAKGV 204 (701)
Q Consensus 141 ~~~~d~~~ar~ll~~------------i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l----~~~~~A~~~ 204 (701)
...|++++|...+.. +..+++....|++++|..+++++++.+|.+.++|...+.+ +..+.|...
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 445566666666655 4445555555666666666666666666666655554443 233456666
Q ss_pred HHHHHHhCCCcHHHHHHHHHcc-------------------------------------cCHHHHHHHHHHHHHhcCCCH
Q 040951 205 VAKGVRQIPKSVRLWLQAAELD-------------------------------------HDKANKSRVLRMALDEIPDSV 247 (701)
Q Consensus 205 l~~al~~~P~~~~lw~~~~~le-------------------------------------~~~~~a~~~l~kal~~~P~~~ 247 (701)
|.++++.+|.++..|...+... .+++.|...++++++.+|++.
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 295 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCch
Confidence 6666666666555554443322 144555555556665555544
Q ss_pred HHHH----HHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHH----hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 248 RLWK----ALVEISSEEEARILLHRAVECCPLDVELWLALA----RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEA 319 (701)
Q Consensus 248 ~l~~----~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~----~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~ 319 (701)
..+. .+...+++++|...+.++++..|.+...+..++ ..|++++|...+++++...|.++.++..++.++..
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLA 375 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3222 122334666666666666666666654443322 23556666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC--------------------------------------
Q 040951 320 NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS-------------------------------------- 361 (701)
Q Consensus 320 ~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~-------------------------------------- 361 (701)
.|++++|...|++++...|.+ ...|...+..+...|.
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPEN-----AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHH
Confidence 666666666666665544332 1222222222211111
Q ss_pred --------------------cHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040951 362 --------------------DAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP 421 (701)
Q Consensus 362 --------------------~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 421 (701)
.+..+...|++++|+.+|+++++.+|++..++..++.++...|++++|...|++++...|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 530 (899)
T TIGR02917 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530 (899)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 344456666667777777777766676666666677776677777777777777776667
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Q 040951 422 QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIV 500 (701)
Q Consensus 422 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~ 500 (701)
.+..++..++.++...|++++|+..+++++..+|.+...+..++.++...|++++|..++++++...|. +.+|..++.+
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666666677777666777777777777777777766666667777777777777777777777766665 6677777777
Q ss_pred HHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHH
Q 040951 501 ERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSK 580 (701)
Q Consensus 501 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~ 580 (701)
+...|++++|+..|+++++..|.++..+..++.++...|++++|...|+++++..|++...+..++.++.. .|++++
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 687 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA---AKRTES 687 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777 777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCC----ccchhHHHHHHHhc
Q 040951 581 ARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPH----HDRKSKGKDALVKS 656 (701)
Q Consensus 581 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~----~~~~~~~~~al~~~ 656 (701)
|..+++.+....|.++..+..+|.++...|++++|...|.+++...|++. .+...+..... ......+.++++..
T Consensus 688 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777663 33332222211 22233455677777
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc
Q 040951 657 DRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFW 697 (701)
Q Consensus 657 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w 697 (701)
|+++.++..+|.++...|++++|..+|+++++.+|+++.+|
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 77777788888888878888888888888887777765544
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.4e-39 Score=312.50 Aligned_cols=454 Identities=23% Similarity=0.368 Sum_probs=406.6
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHhhcCc----chHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHHHHHH
Q 040951 169 AAARKLITKGCNMCPKNEDVWLEACRLARP----DEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLRMALD 241 (701)
Q Consensus 169 ~~A~~~~~~~~~~~P~~~~~wl~~~~l~~~----~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~kal~ 241 (701)
-.-|+.|+..++.+--+...|+.++.++.. ..|++++++||..+..+..||++++++++ ....|+.++.+|+.
T Consensus 56 ~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 56 LRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 345788999999999999999999998753 48999999999999999999999999998 67789999999999
Q ss_pred hcCCCHHHHHHHHhhc----CHHHHHHHHHHHHHHCCCCHHHHHHHHhcc----ChHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 242 EIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLALARLE----TYGVARSVLNKARKKLPKERAIWIAA 313 (701)
Q Consensus 242 ~~P~~~~l~~~~~~l~----~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~----~~~~A~~~l~~a~~~~p~~~~~~~~~ 313 (701)
..|.-..+|..|+.++ +...|+++|++.++..|+ ..+|.++++++ +.+.|+.+|++.+-.+|+ ...|+.+
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wiky 213 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKY 213 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHH
Confidence 9999999999999776 999999999999999998 59999999874 789999999999999985 9999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCC--HH
Q 040951 314 AKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTK--KS 391 (701)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 391 (701)
+++++++|+...+..+|++|++.+.++.. ....+..+|.+. ..++.++.|+.+|+-++..-|.+ ..
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~--~e~lfvaFA~fE----------e~qkE~ERar~iykyAld~~pk~raee 281 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEE--AEILFVAFAEFE----------ERQKEYERARFIYKYALDHIPKGRAEE 281 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 99999999999999999999998877532 234566666655 78899999999999999999988 67
Q ss_pred HHHHHHHHHHHcCCHHHHHH--------HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH----
Q 040951 392 IWLKAAQLEKTHGSRESLIA--------LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEE---- 459 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~--------~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~---- 459 (701)
++..+..+..+.|+...... .|+..+..+|.+.+.|+.+..+....|+.+..+++|++|+...|...+
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W 361 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW 361 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence 88899999999998765443 458888999999999999999999999999999999999998876332
Q ss_pred -----HHHHHHHH-HHHcCcHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHH
Q 040951 460 -----IWLAAFKL-EFENRELERARMLLAKARDMGGT-----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLW 528 (701)
Q Consensus 460 -----~~~~la~~-~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 528 (701)
+|+.++.. .....+.+.++++|+.++++.|. ..+|+.++++..++.+...|++++..++..+|. ..++
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlF 440 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHH
Confidence 55555443 35678999999999999999987 899999999999999999999999999999999 7888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHH
Q 040951 529 LMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN-P-EIWLATIRAE 606 (701)
Q Consensus 529 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~-~~~~~l~~~~ 606 (701)
-.+..+..+.++++.++.+|++.+...|.+...|..+|.+... .|+.+.|+.+|+-|++...-+ | -+|-.++.++
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~---LgdtdRaRaifelAi~qp~ldmpellwkaYIdFE 517 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETS---LGDTDRARAIFELAISQPALDMPELLWKAYIDFE 517 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHH---hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhh
Confidence 8999999999999999999999999999999999999999999 999999999999999876432 2 5899999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 040951 607 SKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641 (701)
Q Consensus 607 ~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~ 641 (701)
...|.++.|..+|++.|+..+... +|...+.++.
T Consensus 518 i~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 518 IEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred hhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 999999999999999999998765 8888776654
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-37 Score=367.88 Aligned_cols=538 Identities=15% Similarity=0.111 Sum_probs=365.8
Q ss_pred chhhhcHHHHHHHHHH------------HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHH----------------HH
Q 040951 140 NSELRDILKARKIVRA------------IQAARLEELAKEEAAARKLITKGCNMCPKNEDVW----------------LE 191 (701)
Q Consensus 140 ~~~~~d~~~ar~ll~~------------i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~w----------------l~ 191 (701)
-...++.+.|++.|.. ...+++....|+.++|.+.+++.++.+|.+.+.+ +.
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 3455666666666666 4556666666777777777777777777766654 22
Q ss_pred HHhh----cCcchHHHHHHHHHHhCCCcHH----HHHHHHHcccCHHHHHHHHHHHHHhcCCCHHHHHHHHhh----cCH
Q 040951 192 ACRL----ARPDEAKGVVAKGVRQIPKSVR----LWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEI----SSE 259 (701)
Q Consensus 192 ~~~l----~~~~~A~~~l~~al~~~P~~~~----lw~~~~~le~~~~~a~~~l~kal~~~P~~~~l~~~~~~l----~~~ 259 (701)
.+++ +..++|...|.++++.+|.+.. .|........+.++|+..|+++++.+|+++.++..+..+ +++
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 2222 3445666777777766666643 233333333456667777777777777766655544433 266
Q ss_pred HHHHHHHHHHHH----------------------------------HCCCCHHH------------------------HH
Q 040951 260 EEARILLHRAVE----------------------------------CCPLDVEL------------------------WL 281 (701)
Q Consensus 260 ~~A~~~l~~a~~----------------------------------~~P~~~~l------------------------~~ 281 (701)
++|+..|++++. ..|++... -.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 666666665543 22332211 11
Q ss_pred HHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHH--c
Q 040951 282 ALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEK--A 359 (701)
Q Consensus 282 ~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~--~ 359 (701)
.+...|++++|+..|+++++.+|.++.++..+|.++.+.|++++|+..|+++++..|++.. ...|..+.....- .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~---~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN---RDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc---hhHHHHHHHhhhHHHH
Confidence 2334479999999999999999999999999999999999999999999999998776532 1223211100000 0
Q ss_pred CCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 040951 360 GSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGD 439 (701)
Q Consensus 360 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~ 439 (701)
-..+..+...|++++|+..|++++..+|++..++..++.++...|++++|+..|++++..+|.+..++..++.++. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 0023455899999999999999999999999999999999999999999999999999999999888777766653 233
Q ss_pred hHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHH
Q 040951 440 VPAARDILQEAYATIPN---------SEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAE 509 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~ 509 (701)
.++|+.++++.....+. ....+..++..+...|++++|+..|+++++..|+ +.+++.++.++...|++++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44444444332221111 0112333444444445555555555555544444 4444444444444555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH--------------------------------------------HHHHHHcCCHHHHH
Q 040951 510 ERGFIEEGLKRFPSFFNLWLML--------------------------------------------GQLEERLGHLKEAK 545 (701)
Q Consensus 510 A~~~~~~al~~~p~~~~~~~~l--------------------------------------------a~~~~~~~~~~~A~ 545 (701)
|+..+++++...|+++..++.+ +..+...|++++|+
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 5555555444444444444444 44455555555555
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 546 EAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 546 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
.+++ ..|.++.++..++.++.. .|++++|+..|++++..+|+++.++..++.++...|++++|+..++++++.
T Consensus 594 ~~l~----~~p~~~~~~~~La~~~~~---~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLR----QQPPSTRIDLTLADWAQQ---RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHH----hCCCCchHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 5544 578888999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCcc----chhHHHHHHHhcCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 626 CPNSGILWAELIKMVPHHD----RKSKGKDALVKSDRDP------HVFAAVAKLFWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 626 ~p~~~~l~~~~~~~~~~~~----~~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 688 (701)
.|+++..+...+......+ ....+.+++...|+++ .++..+|.++...|++++|+..|++|+.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999887776554333323 3345667777766543 4677789999999999999999999986
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-37 Score=368.48 Aligned_cols=535 Identities=16% Similarity=0.107 Sum_probs=422.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhh----cCcchHHHHHHHHHHhCCCcHHHHHH----------
Q 040951 156 IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRL----ARPDEAKGVVAKGVRQIPKSVRLWLQ---------- 221 (701)
Q Consensus 156 i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l----~~~~~A~~~l~~al~~~P~~~~lw~~---------- 221 (701)
++.+|+-+..++.+.|++.+.+++..+|++++++...+++ +..++|...+++.++.+|++...+..
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCc
Confidence 4578888889999999999999999999999999888775 45679999999999999999887632
Q ss_pred ------HHHc---ccCHHHHHHHHHHHHHhcCCCHHH----HHHHHhh-cCHHHHHHHHHHHHHHCCCCHHHHHHHHhc-
Q 040951 222 ------AAEL---DHDKANKSRVLRMALDEIPDSVRL----WKALVEI-SSEEEARILLHRAVECCPLDVELWLALARL- 286 (701)
Q Consensus 222 ------~~~l---e~~~~~a~~~l~kal~~~P~~~~l----~~~~~~l-~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l- 286 (701)
.+.+ ..++++|...|+++++..|.+..+ |...... ++.++|+..|+++++..|.+..++..++++
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll 191 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLL 191 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2222 127888888899988888887653 3333222 488889999999988889888888777665
Q ss_pred ---cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC--
Q 040951 287 ---ETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS-- 361 (701)
Q Consensus 287 ---~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~-- 361 (701)
+++++|+..|+++....+.....-..+.......+....+...+...+...|..... ......+.........
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~--~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV--AAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH--HHHHHHHHHHHHhccCcc
Confidence 788888888888877554332221111111222344455555666655555443210 0000000000000000
Q ss_pred -----cHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----------
Q 040951 362 -----DAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEV----------- 425 (701)
Q Consensus 362 -----~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----------- 425 (701)
.+..+...|++++|+..|++++..+|++..++..++.++...|++++|+..|+++++.+|++..
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 2445688999999999999999999999999999999999999999999999999999997642
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHH---
Q 040951 426 ---LWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSA--- 498 (701)
Q Consensus 426 ---~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a--- 498 (701)
.....+..+...|++++|+..|++++..+|++..++..++.++...|++++|+..|+++++..|. ..++..++
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12344777888999999999999999999999999999999999999999999999999999888 55444333
Q ss_pred ---------------------------------------HHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 499 ---------------------------------------IVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLG 539 (701)
Q Consensus 499 ---------------------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 539 (701)
..+...|++++|+..|+++++.+|+++.+++.++.++...|
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33456799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHH-------------------------------
Q 040951 540 HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVA------------------------------- 588 (701)
Q Consensus 540 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a------------------------------- 588 (701)
++++|+..|+++++..|.++..++.++.++.. .++.++|+..++++
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~---~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSG---SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 99999999999999999999988888877777 77777776665532
Q ss_pred ---------HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccc----hhHHHHHHHh
Q 040951 589 ---------RLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDR----KSKGKDALVK 655 (701)
Q Consensus 589 ---------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~----~~~~~~al~~ 655 (701)
+...|.++.++..++.++...|++++|+..|+++++..|+++..+...+.+....++ ...+..+++.
T Consensus 587 G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 587 GKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 234788889999999999999999999999999999999999999887765544333 3355667778
Q ss_pred cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 656 SDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 656 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
.|+++.++..+|.++...|++++|...|++++...|+.+.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 8899999999999999999999999999999998876553
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-40 Score=328.72 Aligned_cols=424 Identities=16% Similarity=0.115 Sum_probs=356.3
Q ss_pred CHHHHHHHHHHHHHhcCCCHH--HHHHHHhhc--CHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHH
Q 040951 228 DKANKSRVLRMALDEIPDSVR--LWKALVEIS--SEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKA 299 (701)
Q Consensus 228 ~~~~a~~~l~kal~~~P~~~~--l~~~~~~l~--~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a 299 (701)
++.+|.+.....-..+|.+.. +....+..+ +++.....-..+++..|.-.+.+..+++. |++++|...|+.+
T Consensus 63 d~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~a 142 (966)
T KOG4626|consen 63 DYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAA 142 (966)
T ss_pred CHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 777888877777778887765 333333332 66666666667788888877777766654 7888888899999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHH
Q 040951 300 RKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIF 379 (701)
Q Consensus 300 ~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~ 379 (701)
++..|+..++|+.+|.++...|+.+.|...|..+++..|... ......+. .....|..++|...|
T Consensus 143 iel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~-----ca~s~lgn----------Llka~Grl~ea~~cY 207 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY-----CARSDLGN----------LLKAEGRLEEAKACY 207 (966)
T ss_pred HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh-----hhhcchhH----------HHHhhcccchhHHHH
Confidence 998898889999999888888888888888888888777542 11222222 226778888888899
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 040951 380 SHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEE 459 (701)
Q Consensus 380 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~ 459 (701)
.++++..|....+|..++.++...|+...|+..|+++++.+|...++|+.+|.+|...+.+++|+..|.+++...|++..
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~ 287 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV 287 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh
Confidence 99998888888888889888888898888999999999999988888999999988888899999999999888888888
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL 538 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 538 (701)
++-.++.+|.++|..+-|+..|+++++..|. +.++..++..+...|+..+|..+|.+++..+|+.++....+|.++..+
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 8888888888889999999999999988888 888888888888889999999999999999998888888999999888
Q ss_pred CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040951 539 GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSF 618 (701)
Q Consensus 539 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 618 (701)
|.++.|..+|.+++...|....++..++.++.+ +|++++|+..|+.++...|...+.+.++|..|...|+...|+..
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq---qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ---QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh---cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 999999999999988889888888889988888 88999999999999988898888888899988888999899999
Q ss_pred HHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc
Q 040951 619 IAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWA 698 (701)
Q Consensus 619 ~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~ 698 (701)
|.++++.+|. -++++.++|.+|...|+..+|+..|+.|+++.|++++++.
T Consensus 445 y~rAI~~nPt------------------------------~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 445 YTRAIQINPT------------------------------FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHhcCcH------------------------------HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 9888888886 3788888999999999999999999999999999988875
Q ss_pred c
Q 040951 699 L 699 (701)
Q Consensus 699 ~ 699 (701)
.
T Consensus 495 N 495 (966)
T KOG4626|consen 495 N 495 (966)
T ss_pred H
Confidence 4
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-39 Score=321.92 Aligned_cols=470 Identities=17% Similarity=0.133 Sum_probs=304.7
Q ss_pred hhhhhhcccccCCCCCccccChhhhHHhhhhcccccchhhhcHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHhhhCC
Q 040951 104 KILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCP 183 (701)
Q Consensus 104 ~~l~~~ld~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~d~~~ar~ll~~i~~arl~~~~g~~~~A~~~~~~~~~~~P 183 (701)
...+++||+.+.+++ .+. -+..++ ...++..+.++-|-.+++ .|++.+|.+....+-+.+|
T Consensus 19 ~~~~~~ld~~~~s~~-s~~-----v~qq~~---~t~~~~~~~l~lah~~yq----------~gd~~~a~~h~nmv~~~d~ 79 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSG-SSS-----VLQQFN---KTHEGSDDRLELAHRLYQ----------GGDYKQAEKHCNMVGQEDP 79 (966)
T ss_pred HHHHHHhccCccccc-chH-----HHHHhc---cCCccchhHHHHHHHHHh----------ccCHHHHHHHHhHhhccCC
Confidence 567788888765443 322 122232 222344444444444433 6999999999999999999
Q ss_pred CCHHHH--HHHHhhc--CcchHHHHHHHHHHhCCCcHHHHHHHHHcccCHHHHHHHHHHHHHhcCCCHHHHHHHHhhcCH
Q 040951 184 KNEDVW--LEACRLA--RPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKALVEISSE 259 (701)
Q Consensus 184 ~~~~~w--l~~~~l~--~~~~A~~~l~~al~~~P~~~~lw~~~~~le~~~~~a~~~l~kal~~~P~~~~l~~~~~~l~~~ 259 (701)
.+-+.. ++++-.+ ..+.+.+--..+++.+|+-...+-.++.... .-++.
T Consensus 80 t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~k---------------------------erg~~ 132 (966)
T KOG4626|consen 80 TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILK---------------------------ERGQL 132 (966)
T ss_pred CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHH---------------------------HhchH
Confidence 888753 4555443 3456666666778888877666555544322 11244
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH----hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040951 260 EEARILLHRAVECCPLDVELWLALA----RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIR 335 (701)
Q Consensus 260 ~~A~~~l~~a~~~~P~~~~l~~~l~----~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~ 335 (701)
.+|+.++..++++.|+..+.|+.++ .-|+.+.|...|..+++.+|....+...++.+....|...+|...|.+++.
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 5555555555555555555555433 225566666666666666666666666666666666666666666666666
Q ss_pred HhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040951 336 ALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRK 415 (701)
Q Consensus 336 ~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 415 (701)
..|.- .-.|..++... ..+|+.-.|+..|+++++.+|+..++++.++.++...+.++.|...|.+
T Consensus 213 ~qp~f-----AiawsnLg~~f----------~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 213 TQPCF-----AIAWSNLGCVF----------NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred hCCce-----eeeehhcchHH----------hhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 55533 23455555433 5666666666666666666676666677777766666666677777777
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHH
Q 040951 416 AVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVW 494 (701)
Q Consensus 416 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~ 494 (701)
++...|++..++-.+|-+|..+|..+-|+..|+++++..|+.++++..++..+-..|+..+|..+|.+++...|+ ++..
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 766666666666666666666667777777777777666666666666666666666777777777776666666 6666
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcc
Q 040951 495 MKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574 (701)
Q Consensus 495 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 574 (701)
..+|.++.++|.++.|..+|.+++..+|....++..+|.+|.++|++++|+..|+.++.+.|...+++..+|..+..
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke--- 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE--- 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH---
Confidence 66666666667777777777777776676666666677777666777777777777766667666666667766666
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELI 637 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~ 637 (701)
+|+.+.|+..|.+|+..+|...+++.+++.+|...|+..+|+..|+.++++.|+.+..+.+++
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 666777777777777766666666666677776677777777777777776666666665543
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=5.3e-32 Score=306.96 Aligned_cols=535 Identities=12% Similarity=0.011 Sum_probs=259.3
Q ss_pred hcHHHHHHHHHH------------HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhcCcchHHHHHHHHHHh
Q 040951 144 RDILKARKIVRA------------IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQ 211 (701)
Q Consensus 144 ~d~~~ar~ll~~------------i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~~~~~A~~~l~~al~~ 211 (701)
||.+.|..+|.. ...+++....|++++|+..++++++.+|.|...++..+.+...++|..+|++.++.
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQ 137 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHHHh
Confidence 555555555555 44455555556666666666666666666665555555555555666666666666
Q ss_pred CCCcHHHHHHHHHc--------ccCHHHHHHHHHHHHHhcCC--CHHH----HHHHHhhcCHHHHHHHHHHHHHHCCCCH
Q 040951 212 IPKSVRLWLQAAEL--------DHDKANKSRVLRMALDEIPD--SVRL----WKALVEISSEEEARILLHRAVECCPLDV 277 (701)
Q Consensus 212 ~P~~~~lw~~~~~l--------e~~~~~a~~~l~kal~~~P~--~~~l----~~~~~~l~~~~~A~~~l~~a~~~~P~~~ 277 (701)
+|.+.......+.+ ....+.+...++ .-...|+ ...+ ...|..++++++|+..+.++++..|.+.
T Consensus 138 ~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~ 216 (987)
T PRK09782 138 QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSA 216 (987)
T ss_pred CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCH
Confidence 66665554444443 334444555444 1112222 2111 1223444566666666666666666665
Q ss_pred HHHHHHH----h-ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHH
Q 040951 278 ELWLALA----R-LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKE 352 (701)
Q Consensus 278 ~l~~~l~----~-l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~ 352 (701)
..+..+. . +++ +.+..++... ...++.++..++..+.+.|+.++|..++++.-...+..+ ....|+..
T Consensus 217 ~~~~~L~~ay~q~l~~-~~a~al~~~~---lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~---~~~~~~~~ 289 (987)
T PRK09782 217 AERRQWFDVLLAGQLD-DRLLALQSQG---IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA---QEKSWLYL 289 (987)
T ss_pred HHHHHHHHHHHHhhCH-HHHHHHhchh---cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC---ccHHHHHH
Confidence 5443332 2 233 5555554432 225566666666666666666666666665433222211 11222221
Q ss_pred HHHH------------------------------HHcCC----------------cHH---HHHhcCCHHHHHHHHHHHH
Q 040951 353 AEIA------------------------------EKAGS----------------DAE---ECKKRGSIETARAIFSHAC 383 (701)
Q Consensus 353 a~~~------------------------------e~~~~----------------~a~---~~~~~~~~~~A~~~~~~al 383 (701)
.... .+.+. ... .....+.+.++.+......
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 1110 00000 000 0011122333333333333
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------------------
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVT--------------------------------------------- 418 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------------------------- 418 (701)
...|.+......++....+.|+..+|..+|+++..
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 33344444444444444444444444444444443
Q ss_pred --------------------hCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHH
Q 040951 419 --------------------YFPQ--AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELER 476 (701)
Q Consensus 419 --------------------~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~ 476 (701)
..|. ++.+|..+|.++.. +++++|+..|.+++...|++. ..+.++..+...|++++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHH
Confidence 3344 45555555555543 445555555555555555432 23334444445555555
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC
Q 040951 477 ARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556 (701)
Q Consensus 477 A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 556 (701)
|+..|+++....|....++.++.++...|++++|..+|.++++..|.+..++..++......|++++|...|+++++..|
T Consensus 528 Ai~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 528 ALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 55555555444444334444455555555555555555555555555444444444444444555555555555555555
Q ss_pred CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL 636 (701)
Q Consensus 557 ~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~ 636 (701)
+ ..++..++.++.+ .|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++..|+++.++..+
T Consensus 608 ~-~~a~~~LA~~l~~---lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 608 S-ANAYVARATIYRQ---RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred C-HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3 4555555555555 55555555555555555555555555555555555555555555555555555555554444
Q ss_pred HhcCCCccc----hhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 637 IKMVPHHDR----KSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 637 ~~~~~~~~~----~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
+......++ ...+.+++...|+++.+.+..|++.....+++.|.+.+.++..++|+
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 433222222 22344455555555555555555555555555555555555555443
No 11
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.3e-32 Score=266.48 Aligned_cols=489 Identities=21% Similarity=0.314 Sum_probs=416.3
Q ss_pred CccccChhhhHHhhhhcccccchhhhcHHHHHHHHHH-HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhcC
Q 040951 119 GLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRA-IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLAR 197 (701)
Q Consensus 119 ~~~~~~p~~~l~~~~~~~~~~~~~~~d~~~ar~ll~~-i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~~ 197 (701)
.+.-+||.. |.+-+.-. .-.-.+.|.++|..+.. |--|..|+..+++..||.++++++..+-.+..+||.++.++.
T Consensus 42 k~~ItD~~E-L~eYq~Rk--RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em 118 (677)
T KOG1915|consen 42 KQKITDSEE-LSEYQLRK--RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM 118 (677)
T ss_pred CCCCCCHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 455566665 44333111 12345689999999998 999999999999999999999999999999999999999864
Q ss_pred ----cchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHHHHHHhcCCCHHHHHHHHhhc----CHHHHHHHH
Q 040951 198 ----PDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLRMALDEIPDSVRLWKALVEIS----SEEEARILL 266 (701)
Q Consensus 198 ----~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~kal~~~P~~~~l~~~~~~l~----~~~~A~~~l 266 (701)
...|+.++.+|+...|.--++|.+++-++. +...|+.+|++-++..|+ ...|..+++++ +.+.|+.+|
T Consensus 119 knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IY 197 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIY 197 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 348999999999999999999999998876 888999999999999996 57899999887 889999999
Q ss_pred HHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhc
Q 040951 267 HRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLPKE---RAIWIAAAKLEEANGNTSMVGKIIERGIRALQG 339 (701)
Q Consensus 267 ~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~ 339 (701)
++.+-+.|+ +..|+.++++ |+...|+.+|++|++...++ ..+....|.+++.+..++.|..+|+-+++..|+
T Consensus 198 erfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 198 ERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred HHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999987 7999999987 68999999999999988765 456778899999999999999999999999998
Q ss_pred CcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCH---HHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040951 340 EEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSI---ETA-----RAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411 (701)
Q Consensus 340 ~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~---~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 411 (701)
+.. ...+-.+.... .+-|+. +.+ .--|+..++.+|.|.+.|+.+..+....|+.+...+
T Consensus 277 ~ra---eeL~k~~~~fE----------KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 277 GRA---EELYKKYTAFE----------KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred ccH---HHHHHHHHHHH----------HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 742 22333333333 223332 222 234888999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcH---------HHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCcHHHH
Q 040951 412 LLRKAVTYFPQAE---------VLWLMGAKEKW-LAGDVPAARDILQEAYATIPNS----EEIWLAAFKLEFENRELERA 477 (701)
Q Consensus 412 ~~~~al~~~p~~~---------~~~~~~a~~~~-~~g~~~~A~~~l~~a~~~~p~~----~~~~~~la~~~~~~~~~~~A 477 (701)
+|++|+...|... .+|..++.... ...|.+.++++|+.+++..|.. ..+|+.++.+..++.+...|
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 9999999887532 35555555433 3789999999999999999973 56999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 478 RMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 478 ~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
++++-.++..+|.+.++..+..+..+.++++..+.+|++-+...|.+-..|..+|.+...+|+.+.|+.+|+-++....-
T Consensus 424 RkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 424 RKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886544
Q ss_pred C--HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHH
Q 040951 558 C--IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAES-----KHG-----------NKKEADSFI 619 (701)
Q Consensus 558 ~--~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~ 619 (701)
+ ..+|-.+..+... .|.+++|+.+|++.+...+... +|...+.++. ..| +...|..+|
T Consensus 504 dmpellwkaYIdFEi~---~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~if 579 (677)
T KOG1915|consen 504 DMPELLWKAYIDFEIE---EGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIF 579 (677)
T ss_pred ccHHHHHHHhhhhhhh---cchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHH
Confidence 3 3469999999999 9999999999999999988775 9999999887 445 677899999
Q ss_pred HHHHHhCCCC
Q 040951 620 AKALQKCPNS 629 (701)
Q Consensus 620 ~~al~~~p~~ 629 (701)
++|.....+.
T Consensus 580 erAn~~~k~~ 589 (677)
T KOG1915|consen 580 ERANTYLKES 589 (677)
T ss_pred HHHHHHHHhc
Confidence 9998765433
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-31 Score=281.29 Aligned_cols=517 Identities=16% Similarity=0.133 Sum_probs=431.7
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHh--hc--C--cchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHHH
Q 040951 168 EAAARKLITKGCNMCPKNEDVWLEACR--LA--R--PDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLRM 238 (701)
Q Consensus 168 ~~~A~~~~~~~~~~~P~~~~~wl~~~~--l~--~--~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~k 238 (701)
+..|..+|..++...-.....|+...- |. . .+.|-+.|...++.+|+++...+.-+.+.- ++..|..+|++
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 678899999999988877766665443 21 1 468999999999999999977665555443 88999999999
Q ss_pred HHHhcCCCHH-----HHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhc-------cChHHHHHHHHHHHHhCCCC
Q 040951 239 ALDEIPDSVR-----LWKALVEISSEEEARILLHRAVECCPLDVELWLALARL-------ETYGVARSVLNKARKKLPKE 306 (701)
Q Consensus 239 al~~~P~~~~-----l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l-------~~~~~A~~~l~~a~~~~p~~ 306 (701)
+|..+|.... .|..+..+.+.+.|+..|.++++++|+++....+|+-+ ..+..+...+.++.+.+|.+
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 9999997644 67778888999999999999999999999988887654 46889999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 307 RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVF 386 (701)
Q Consensus 307 ~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 386 (701)
|.+...++..+...|++..+..+...++......... ...++..+ ..|..+|++++|..+|..++..+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~--aes~Y~~g----------Rs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK--AESFYQLG----------RSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH----------HHHHhhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999998864332211 22333333 44589999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCCHHHH
Q 040951 387 LTK-KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG----DVPAARDILQEAYATIPNSEEIW 461 (701)
Q Consensus 387 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g----~~~~A~~~l~~a~~~~p~~~~~~ 461 (701)
|++ .-.++.+|++++..|+++.+..+|+++++..|++......+|.+|...+ ..+.|..++.++++..|.+.++|
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 998 6788999999999999999999999999999999999999999998775 57899999999999999999999
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-----CCCC-----H
Q 040951 462 LAAFKLEFENRELERARMLLAKARDMG------GTERVWMKSAIVERELGNNAEERGFIEEGLKR-----FPSF-----F 525 (701)
Q Consensus 462 ~~la~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~-----~ 525 (701)
+.++.++...+- ..++..|..++... +.+.+....|.+++..|++.+|...|..++.. +++. .
T Consensus 418 l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 999999866554 44488888888421 22888999999999999999999999999887 1221 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
.+-++++.+++..++++.|.+.|..+++.+|..+.++++++.+... .++..+|...+..++..+..+|.+|..+|.+
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~---k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD---KNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh---ccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 3689999999999999999999999999999999999999988888 8999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHH---------HHHHHhcCCCccc---------hhHHHHHHHhcCCChHHHHHHH
Q 040951 606 ESKHGNKKEADSFIAKALQKCPNSGIL---------WAELIKMVPHHDR---------KSKGKDALVKSDRDPHVFAAVA 667 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~p~~~~l---------~~~~~~~~~~~~~---------~~~~~~al~~~p~~~~~~~~lg 667 (701)
+.....+..|..-|+..++.-...+.. |.....-..+... .+.+.++|+.+|.|..+-..+|
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 999999999988887777654333222 2221111122221 1235667888899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCccccccc
Q 040951 668 KLFWHDRKVDKARNWFNKAVSLDPDTGDFWALY 700 (701)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~~ 700 (701)
.++...|++.+|+.+|.++.+.-.++.++|+++
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl 686 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSDFEDVWLNL 686 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence 999999999999999999999888889999864
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-31 Score=278.16 Aligned_cols=512 Identities=18% Similarity=0.127 Sum_probs=328.1
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHhhc--Cc--chHHHHHHHHHHhCCCcH---H--HHHHHHHcccCHHHHHHHHHH
Q 040951 168 EAAARKLITKGCNMCPKNEDVWLEACRLA--RP--DEAKGVVAKGVRQIPKSV---R--LWLQAAELDHDKANKSRVLRM 238 (701)
Q Consensus 168 ~~~A~~~~~~~~~~~P~~~~~wl~~~~l~--~~--~~A~~~l~~al~~~P~~~---~--lw~~~~~le~~~~~a~~~l~k 238 (701)
++.|-+.|.-+++..|+|.-..|..+++. .. -.|..+|.+++..+|... . +|.-...+. ..+.|+..+.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~-~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLG-MSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhcc-chhhHHHHHHH
Confidence 46666666666666666666666666653 22 366666666666666532 2 233222222 44556666666
Q ss_pred HHHhcCCCHHHHHHHHh--hc-----CHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCC--
Q 040951 239 ALDEIPDSVRLWKALVE--IS-----SEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLPK-- 305 (701)
Q Consensus 239 al~~~P~~~~l~~~~~~--l~-----~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~-- 305 (701)
+++++|+++....++.. +. .+..+..++.++...+|.++.+...++.. ++|+.+..+...++...-.
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 66666666664443322 21 55666666666666666666666666554 5666666666666655422
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHH
Q 040951 306 -ERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACT 384 (701)
Q Consensus 306 -~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~ 384 (701)
-.+.++.+|+.+-.+|++++|..+|..+++..+++.+. ..+.+++. ++..|+++.+..+|++++.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l----~~~GlgQm----------~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL----PLVGLGQM----------YIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc----cccchhHH----------HHHhchHHHHHHHHHHHHH
Confidence 23446666666666677776666666666665555211 12333332 3666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----C
Q 040951 385 VFLTKKSIWLKAAQLEKTHG----SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI-----P 455 (701)
Q Consensus 385 ~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~-----p 455 (701)
..|++......+|.+|...+ ..+.|..++.+++...|.+..+|+.++.++.. ++.-.++.+|..|+..- +
T Consensus 371 ~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC
Confidence 66666666666666666554 44566666666666666666666666666543 33333366665555321 2
Q ss_pred CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----CC------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMG-----GT------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 456 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----p~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
--+++...+|.+++..|++.+|...|..+.... ++ ...-+.++.++...+++..|...|...++.+|..
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 234555566666666666666666666666541 11 1235666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhh-----------------------------c--
Q 040951 525 FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKR-----------------------------N-- 573 (701)
Q Consensus 525 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------------------------~-- 573 (701)
.+.+..+|-+....+...+|...+..++..+..++.+|..+|.++... |
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 666666665556666666666666666666666666666666444321 0
Q ss_pred --------------cCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhc
Q 040951 574 --------------GLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKM 639 (701)
Q Consensus 574 --------------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~ 639 (701)
..+.+++|+..|.+++..+|.|..+-..+|.++...|++..|+.+|.++.+.-.+.+.+|.+.+..
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHC 689 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHH
Confidence 245688999999999999999888888888899999999999999988877766666777775543
Q ss_pred --CCC--ccchhHHHHHHHhc--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 640 --VPH--HDRKSKGKDALVKS--DRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 640 --~~~--~~~~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
+.+ ......++.++++. .++++++..||++++..|.+.+|..++.+|+...|.++-
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 332 22233566666665 378999999999999999999999999999999998864
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.1e-31 Score=294.15 Aligned_cols=420 Identities=14% Similarity=0.049 Sum_probs=302.7
Q ss_pred HHHhhcCHHHHHHHHHHHHHHCCCCHHHHH----HHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 040951 252 ALVEISSEEEARILLHRAVECCPLDVELWL----ALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVG 327 (701)
Q Consensus 252 ~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~----~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~ 327 (701)
.+...+++++|+..|+++++..|+ ...|. ++..+|++++|+..++++++.+|++..+|..+|.++...|++++|.
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345566899999999999999986 34443 4556799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951 328 KIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRE 407 (701)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 407 (701)
..|..+....+... ...... ....-...+...+..++...|.+...+..++..+... ...
T Consensus 215 ~~~~~~~~~~~~~~------~~~~~~-------------~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 274 (615)
T TIGR00990 215 LDLTASCIIDGFRN------EQSAQA-------------VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPK 274 (615)
T ss_pred HHHHHHHHhCCCcc------HHHHHH-------------HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCC
Confidence 88877655422221 111100 0011113344556666777777766666665544322 122
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHH---HHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 040951 408 SLIALLRKAVTYFPQAEVLWLMGAKEK---WLAGDVPAARDILQEAYATI---PNSEEIWLAAFKLEFENRELERARMLL 481 (701)
Q Consensus 408 ~A~~~~~~al~~~p~~~~~~~~~a~~~---~~~g~~~~A~~~l~~a~~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~ 481 (701)
.....+......+|.....+..++... ...+++++|+..|++++... |....++..++.++...|++++|+..|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222333444444454444444444332 22467788888888888653 556667777888888888888888888
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH
Q 040951 482 AKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP 560 (701)
Q Consensus 482 ~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 560 (701)
++++...|. ...|+.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++..
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 888888877 7778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH-----
Q 040951 561 LWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE----- 635 (701)
Q Consensus 561 ~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~----- 635 (701)
.+..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|.+...+..
T Consensus 435 ~~~~la~~~~~---~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYK---EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 88888888888 8888888888888888888888888888888888888888888888888887764322211
Q ss_pred --HHhc----CCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 636 --LIKM----VPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 636 --~~~~----~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
...+ .........+.+++...|++..++..+|.++...|++++|+.+|++++++.+..++
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 1111 11122334566777778888999999999999999999999999999999887554
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.6e-28 Score=276.96 Aligned_cols=559 Identities=10% Similarity=0.003 Sum_probs=412.0
Q ss_pred hhhhhhhhhhhhcccccCCCCCccccChhhhHHhhhhcccccchhhhcHHHHHHHHHH------------HHHHHHHHhh
Q 040951 98 VGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMNDLKITTNSELRDILKARKIVRA------------IQAARLEELA 165 (701)
Q Consensus 98 ~~~~r~~~l~~~ld~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~d~~~ar~ll~~------------i~~arl~~~~ 165 (701)
..+++-....+..|.+++.....-..||.. ..+...........|+..+|+..++. +..+.+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---- 121 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVPDN--IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---- 121 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----
Confidence 455666666677887776654445577776 22323333457889999999999998 222333
Q ss_pred hcHHHHHHHHHHHhhhCCCCHHHHHHHHhh---------cCcchHHHHHH-HHHHhCCCcHHHHHHHHHcc---cCHHHH
Q 040951 166 KEEAAARKLITKGCNMCPKNEDVWLEACRL---------ARPDEAKGVVA-KGVRQIPKSVRLWLQAAELD---HDKANK 232 (701)
Q Consensus 166 g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l---------~~~~~A~~~l~-~al~~~P~~~~lw~~~~~le---~~~~~a 232 (701)
+++.+|..++++.++.+|.+.++.+..+.+ ...++|...+. +.+..+|+...+.+....++ .+.+++
T Consensus 122 ~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 789999999999999999999986555543 34456666665 22223334554555544444 377889
Q ss_pred HHHHHHHHHhcCCCHHHHHHH----Hh-hcCHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cC---------------
Q 040951 233 SRVLRMALDEIPDSVRLWKAL----VE-ISSEEEARILLHRAVECCPLDVELWLALARL----ET--------------- 288 (701)
Q Consensus 233 ~~~l~kal~~~P~~~~l~~~~----~~-l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~--------------- 288 (701)
+..+.++++..|.+...+..+ .. +++ +.+..++...+ ..++.++..++.. |+
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l---k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI---FTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc---ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 999999999999998844333 22 112 33333332211 1233333332211 11
Q ss_pred --------------------------------------------------------------------------------
Q 040951 289 -------------------------------------------------------------------------------- 288 (701)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (701)
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC-----cH
Q 040951 289 YGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS-----DA 363 (701)
Q Consensus 289 ~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~-----~a 363 (701)
+.++........+..|.+......++....+.|+.++|..+|+++... +.+... .......++..+...+. .+
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARL-SQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-Cccccc-CHHHHHHHHHHHHhCCcccchHHH
Confidence 334445555555556888888888899999999999999999999875 332211 22333355555554444 11
Q ss_pred ----------HHHHhcCCHHH---HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 040951 364 ----------EECKKRGSIET---ARAIFSHACTVFLT--KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWL 428 (701)
Q Consensus 364 ----------~~~~~~~~~~~---A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 428 (701)
..+.-.|.+.. +...+.+++...|. +..+|..++.++.. |+.++|+..+.+++...|++. ..+
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHH
Confidence 11222455544 44555566666677 99999999999987 899999999999999999765 366
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh
Q 040951 429 MGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNN 507 (701)
Q Consensus 429 ~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~ 507 (701)
.++..+...|++++|+..|+++....|. ...++.++.++...|++++|...|++++...|. ...+..++......|++
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCH
Confidence 7788888999999999999998777565 456788899999999999999999999999887 55555555555677999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~ 587 (701)
++|+..|+++++.+|+ +.++..+|.++.+.|++++|+..|++++..+|+++.++..+|.++.. .|++++|+..|++
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~---~G~~eeAi~~l~~ 668 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD---SGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHH
Confidence 9999999999999997 99999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccch----hHHHHHHHhcCCChHHH
Q 040951 588 ARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRK----SKGKDALVKSDRDPHVF 663 (701)
Q Consensus 588 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~----~~~~~al~~~p~~~~~~ 663 (701)
+++.+|+++.++..+|.++...|++++|...|++++...|++..+...+..+....... ..+.++...+|+.. +.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~ 747 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IG 747 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hc
Confidence 99999999999999999999999999999999999999999987776666555443322 23445555666655 66
Q ss_pred HHHHHHHHhcCCH
Q 040951 664 AAVAKLFWHDRKV 676 (701)
Q Consensus 664 ~~lg~~~~~~g~~ 676 (701)
...|.+++..+++
T Consensus 748 ~~~g~~~~~~~~~ 760 (987)
T PRK09782 748 LRSGAMSTANNNV 760 (987)
T ss_pred cccchHhhhcccc
Confidence 6677777655553
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.3e-29 Score=279.26 Aligned_cols=426 Identities=14% Similarity=0.081 Sum_probs=316.9
Q ss_pred HhhhcHHHHHHHHHHHhhhCCCCHHHHHHHH----hhcCcchHHHHHHHHHHhCCCcHHHHHHHHHcccCHHHHHHHHHH
Q 040951 163 ELAKEEAAARKLITKGCNMCPKNEDVWLEAC----RLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRM 238 (701)
Q Consensus 163 ~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~----~l~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~~~~~a~~~l~k 238 (701)
-..|+++.|...|.++++.+|+ ...|...+ .++..++|...+.++++.+|+++..|...+..
T Consensus 138 ~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a------------- 203 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA------------- 203 (615)
T ss_pred HHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-------------
Confidence 3358999999999999999986 44444332 22344455555555555555555555444432
Q ss_pred HHHhcCCCHHHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 239 ALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEE 318 (701)
Q Consensus 239 al~~~P~~~~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~ 318 (701)
+..++++++|+..|..+....+.+......+....-...+...+..+++..|.+...|..++.++.
T Consensus 204 --------------~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 204 --------------YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred --------------HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 233446666666665555444433221111111111123444455566666666666666665543
Q ss_pred HcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Q 040951 319 ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTV---FLTKKSIWLK 395 (701)
Q Consensus 319 ~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~ 395 (701)
... .......+.......+.. ...+..++... ......+.+++|+..|++++.. .|....+|..
T Consensus 270 ~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~-------~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~ 336 (615)
T TIGR00990 270 SFR-PKPRPAGLEDSNELDEET-----GNGQLQLGLKS-------PESKADESYEEAARAFEKALDLGKLGEKEAIALNL 336 (615)
T ss_pred Hcc-CCcchhhhhccccccccc-----ccchHHHHHHH-------HHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 221 222222222222221111 11122222110 0013457899999999999986 4777889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHH
Q 040951 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELE 475 (701)
Q Consensus 396 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~ 475 (701)
++.++...|++++|+..|++++..+|.....|+.+|.++...|++++|+..|++++..+|+++.+|..++.++...|+++
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 040951 476 RARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ 554 (701)
Q Consensus 476 ~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 554 (701)
+|+..|++++...|+ ...+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999999999999998 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHH------H-HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 555 CPNCIPLW------Y-SLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 555 ~p~~~~~~------~-~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
.|.+...+ + ..+.++.. .|++++|...+++++..+|++..++..+|.++...|++++|+..|+++++..+
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~---~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQW---KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 98753322 2 22334445 79999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH
Q 040951 628 NSGIL 632 (701)
Q Consensus 628 ~~~~l 632 (701)
..+..
T Consensus 574 ~~~e~ 578 (615)
T TIGR00990 574 TEGEL 578 (615)
T ss_pred cHHHH
Confidence 76554
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=7.9e-28 Score=267.95 Aligned_cols=356 Identities=12% Similarity=0.023 Sum_probs=311.7
Q ss_pred hhcCHHHHHHHHHHHHHHCCCCH-------HHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 040951 255 EISSEEEARILLHRAVECCPLDV-------ELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVG 327 (701)
Q Consensus 255 ~l~~~~~A~~~l~~a~~~~P~~~-------~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~ 327 (701)
..++++.---++..+.+...++. .....+.+-|++++|...++..+...|.++.++..++......|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 33455544444444444333322 23344555699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951 328 KIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRE 407 (701)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 407 (701)
..|++++...|++ ...|...+..+ ...|++++|+..|++++..+|++..+|..++.++...|+++
T Consensus 97 ~~l~~~l~~~P~~-----~~a~~~la~~l----------~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 97 QVVNKLLAVNVCQ-----PEDVLLVASVL----------LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred HHHHHHHHhCCCC-----hHHHHHHHHHH----------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChH
Confidence 9999999988887 46677776555 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 408 SLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN-SEEIWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 408 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
+|...+++++...|.++.++...+. +...|++++|+..+++++..+|. .......++.++...|++++|+..|.+++.
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999888876644 67899999999999999998764 344455667888999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhCChHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH
Q 040951 487 MGGT-ERVWMKSAIVERELGNNAE----ERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL 561 (701)
Q Consensus 487 ~~p~-~~~~~~~a~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 561 (701)
..|+ +.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++...|+++.+
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9998 8999999999999999985 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 562 WYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 562 ~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
+..++.++.. .|++++|+..|++++..+|+++..+..++.++...|++++|...|+++++..|++
T Consensus 321 ~~~La~~l~~---~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 321 RAMYARALRQ---VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999 9999999999999999999988777778899999999999999999999999975
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=8.2e-28 Score=267.79 Aligned_cols=360 Identities=12% Similarity=0.032 Sum_probs=302.4
Q ss_pred HhccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcC
Q 040951 284 ARLETYGVARSVLNKARKKL---PKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAG 360 (701)
Q Consensus 284 ~~l~~~~~A~~~l~~a~~~~---p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~ 360 (701)
.+.++++.-.-+++.+-+.. .++..-.+..+.-..+.|+++.|..++...+...|.+ ...+..++...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-----~~~l~~l~~~~---- 86 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-----RDLLRRWVISP---- 86 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-----hhHHHHHhhhH----
Confidence 33345554444444443332 2234445666777788899999999999999988887 45565555443
Q ss_pred CcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 040951 361 SDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDV 440 (701)
Q Consensus 361 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~ 440 (701)
...|+++.|+..|++++..+|++..+|..++.++...|++++|+..|++++...|++..++..++.++...|++
T Consensus 87 ------l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~ 160 (656)
T PRK15174 87 ------LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKE 160 (656)
T ss_pred ------hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 040951 441 PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEEGL 518 (701)
Q Consensus 441 ~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al 518 (701)
++|+..+++++...|++..++...+ .+...|++++|...+++++...|. ......++.++...|++++|+..|.+++
T Consensus 161 ~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 161 LQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999988887654 478899999999999999988753 4445566788889999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC
Q 040951 519 KRFPSFFNLWLMLGQLEERLGHLKE----AKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 519 ~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 594 (701)
...|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++.. .|++++|+..+++++..+|+
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~---~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR---TGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986 8999999999999999999999999999 99999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 040951 595 NPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDR 674 (701)
Q Consensus 595 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g 674 (701)
++.++..++.++...|++++|+..|++++...|++. ..+..+|.++...|
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~------------------------------~~~~~~a~al~~~G 366 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS------------------------------KWNRYAAAALLQAG 366 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch------------------------------HHHHHHHHHHHHCC
Confidence 999999999999999999999999999999998753 33333455555555
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 040951 675 KVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 675 ~~~~A~~~~~~al~~~p~ 692 (701)
++++|+..|+++++.+|+
T Consensus 367 ~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 367 KTSEAESVFEHYIQARAS 384 (656)
T ss_pred CHHHHHHHHHHHHHhChh
Confidence 555555555555555554
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=2.7e-27 Score=269.32 Aligned_cols=391 Identities=10% Similarity=-0.002 Sum_probs=262.4
Q ss_pred hcCHHHHHHHHHHHHHHCCCCHHHHHHHH----hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040951 256 ISSEEEARILLHRAVECCPLDVELWLALA----RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331 (701)
Q Consensus 256 l~~~~~A~~~l~~a~~~~P~~~~l~~~l~----~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~ 331 (701)
.++.++|+.++.++....|.+...+..++ +.+++++|...|+++++..|.++.++..++.++...|++++|...++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34667777777776666666665554433 33677777777777777777777777777777777777777777777
Q ss_pred HHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040951 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411 (701)
Q Consensus 332 ~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 411 (701)
++++..|.+ .. |..++..+ ...|++++|+..|+++++..|++..++..++.++...|..+.|+.
T Consensus 108 ~~l~~~P~~-----~~-~~~la~~l----------~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 108 QLVSGAPDK-----AN-LLALAYVY----------KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHHhCCCC-----HH-HHHHHHHH----------HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 777766655 33 55555443 667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCcHH-----HHHHHHHHHHH-----cCCh---HHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHc
Q 040951 412 LLRKAVTYFPQAEV-----LWLMGAKEKWL-----AGDV---PAARDILQEAYATIPNSEEI-------WLAAFKLEFEN 471 (701)
Q Consensus 412 ~~~~al~~~p~~~~-----~~~~~a~~~~~-----~g~~---~~A~~~l~~a~~~~p~~~~~-------~~~la~~~~~~ 471 (701)
.++++.. .|.... .....+.+... .+.+ ++|+..++.+++..|.++.. .+.....+...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 7776554 443210 11111122111 1223 66777777777654332221 11112233566
Q ss_pred CcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 040951 472 RELERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF----FNLWLMLGQLEERLGHLKEAK 545 (701)
Q Consensus 472 ~~~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~ 545 (701)
|++++|+..|++++...|. ..+...++.++...|++++|+.+|++++...|.+ ......++.++...|++++|+
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 7788888888887776532 1222334677777888888888888877777654 345566666677778888888
Q ss_pred HHHHHHhhhCCCC---------------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 040951 546 EAYQSGCNQCPNC---------------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHG 610 (701)
Q Consensus 546 ~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 610 (701)
..++++....|.. ..++..++.++.. .|++++|+..+++++...|+++.++..++.++...|
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~---~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY---SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 8888777766521 3456677777777 888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 611 NKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 611 ~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 690 (701)
++++|+..+++++...|+ ++.+++..|.++...|++++|...++++++..
T Consensus 408 ~~~~A~~~l~~al~l~Pd------------------------------~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 408 WPRAAENELKKAEVLEPR------------------------------NINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred CHHHHHHHHHHHHhhCCC------------------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888888888888777776 46677777777778888888888888888888
Q ss_pred CCCccc
Q 040951 691 PDTGDF 696 (701)
Q Consensus 691 p~~~d~ 696 (701)
|+++.+
T Consensus 458 Pd~~~~ 463 (765)
T PRK10049 458 PQDPGV 463 (765)
T ss_pred CCCHHH
Confidence 877643
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.6e-26 Score=263.12 Aligned_cols=402 Identities=11% Similarity=0.006 Sum_probs=276.2
Q ss_pred CCcHHHHHHHHHcccCHHHHHHHHHHHHHhcCCCHHHHHHH----HhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHh---
Q 040951 213 PKSVRLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKAL----VEISSEEEARILLHRAVECCPLDVELWLALAR--- 285 (701)
Q Consensus 213 P~~~~lw~~~~~le~~~~~a~~~l~kal~~~P~~~~l~~~~----~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~--- 285 (701)
|.-+.=|+.++....+..+|..++.++....|.+...+..+ ...+++++|..+|+++++..|.+..++..++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33445577777777777777777777776666666544433 33447777777777777777777766655433
Q ss_pred -ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHH
Q 040951 286 -LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAE 364 (701)
Q Consensus 286 -l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~ 364 (701)
.+++++|+..++++++..|+++. |..++.++...|+++.|...++++++..|++ ...+..++...
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-----~~~~~~la~~l-------- 160 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-----QQYPTEYVQAL-------- 160 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH--------
Confidence 36777777777777777777777 7777777777777777777777777776665 34455554433
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhCCCcHHH-----
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKS-----IWLKAAQLEK-----THGSR---ESLIALLRKAVTYFPQAEVL----- 426 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~p~~~~~----- 426 (701)
...+..+.|+..++++.. .|.... .....+.+.. ..+.+ ++|+..++.++...|.++..
T Consensus 161 --~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 --RNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred --HHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 566677777777766554 443210 1111111111 11223 66777777777654433222
Q ss_pred --HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----HHHHHHHH
Q 040951 427 --WLMGAKEKWLAGDVPAARDILQEAYATIPNSE-EIWLAAFKLEFENRELERARMLLAKARDMGGT-----ERVWMKSA 498 (701)
Q Consensus 427 --~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~a 498 (701)
.+.....+...|++++|+..|+++++..|..+ .+...++.++...|++++|+.+|++++...|. ......++
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11111223456778888888888777753322 22333477777888888888888887776654 23455556
Q ss_pred HHHHHhCChHHHHHHHHHHHHhCCC-------------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHH
Q 040951 499 IVERELGNNAEERGFIEEGLKRFPS-------------F--FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWY 563 (701)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~al~~~p~-------------~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 563 (701)
..+...|++++|+..++++....|. + ..++..++.++...|++++|+..+++++...|.++.++.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6667778888888888888777662 2 346678888888899999999999999999999999999
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~ 634 (701)
.+|.++.. .|++++|+..+++++..+|+++.++...+.++...|++++|..+++++++..|+++.+..
T Consensus 398 ~lA~l~~~---~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 398 DYASVLQA---RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999988 899999999999999999999899999999999999999999999999999998875543
No 21
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.96 E-value=5.6e-25 Score=222.59 Aligned_cols=524 Identities=18% Similarity=0.259 Sum_probs=381.8
Q ss_pred HHHHHhhhCCCCHHHHHHHHhh--cCcc-hHHHHHHHHHHhCCCcHHHHHHHHHccc-----------CHHHHHHHHHHH
Q 040951 174 LITKGCNMCPKNEDVWLEACRL--ARPD-EAKGVVAKGVRQIPKSVRLWLQAAELDH-----------DKANKSRVLRMA 239 (701)
Q Consensus 174 ~~~~~~~~~P~~~~~wl~~~~l--~~~~-~A~~~l~~al~~~P~~~~lw~~~~~le~-----------~~~~a~~~l~ka 239 (701)
-|+.-+..+|.|...|+.++.. +.++ .-..+|++|++..|.|.++|-.+...-. .+..--..|+++
T Consensus 15 pfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 15 PFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred chHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 4677788999999999999976 4454 5557899999999999999999884322 345566788899
Q ss_pred HHhcCCCHHHHHHHHhhc----CHHHHHHHHHHHHHHCCCC--HHHHHHHHhc----cChHHHHHHHHHHHHhCCCCHHH
Q 040951 240 LDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLD--VELWLALARL----ETYGVARSVLNKARKKLPKERAI 309 (701)
Q Consensus 240 l~~~P~~~~l~~~~~~l~----~~~~A~~~l~~a~~~~P~~--~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~~~~ 309 (701)
+-..-.-+.+|..|..+- +...-+..|.+++...|-. ..+|-.++++ +-++-+..+|++-++..|...+-
T Consensus 95 lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee 174 (835)
T KOG2047|consen 95 LVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE 174 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH
Confidence 988888888999887653 7888899999999988853 3566666554 67889999999999999987554
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHhhcCc--ccCCHHHHHHHHHHHHHcCC--------------------------
Q 040951 310 WIAAAKLEEANGNTSMVGKIIERGIRALQGEE--VVIDRDTWMKEAEIAEKAGS-------------------------- 361 (701)
Q Consensus 310 ~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~--~~~~~~~w~~~a~~~e~~~~-------------------------- 361 (701)
+ ...+...++.++|.+.+...+....... .......|..+.....+...
T Consensus 175 y---ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw 251 (835)
T KOG2047|consen 175 Y---IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLW 251 (835)
T ss_pred H---HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHH
Confidence 4 4456667888888888887765321110 12234567666655433322
Q ss_pred --cHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH------------------------------------
Q 040951 362 --DAEECKKRGSIETARAIFSHACTVFL---TKKSIWLKAAQLE------------------------------------ 400 (701)
Q Consensus 362 --~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~------------------------------------ 400 (701)
+|+.|.+.|.+++|+.+|++++..-- +...++-.++.++
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 68889999999999999999876521 1111222222111
Q ss_pred --------------------------HHcCCHHHHHHHHHHHHHh-CCC-----cHHHHHHHHHHHHHcCChHHHHHHHH
Q 040951 401 --------------------------KTHGSRESLIALLRKAVTY-FPQ-----AEVLWLMGAKEKWLAGDVPAARDILQ 448 (701)
Q Consensus 401 --------------------------~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~ 448 (701)
...|+..+-+..|..|+.. +|. -..+|..+|++|+..|+.+.|+.+|+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1134556666667776654 442 34678888888888888888888888
Q ss_pred HHHHhC-CCC---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC-------------------CHHHHHHHHHHHHHhC
Q 040951 449 EAYATI-PNS---EEIWLAAFKLEFENRELERARMLLAKARDMGG-------------------TERVWMKSAIVERELG 505 (701)
Q Consensus 449 ~a~~~~-p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p-------------------~~~~~~~~a~~~~~~g 505 (701)
++.+.+ |.- ..+|...|.......+++.|+++++++..... +..+|..++.++...|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 888775 222 45788888888888888888888888875321 1457888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC--CCCHHHHHHHHHHHhhhccCCCHHHHHH
Q 040951 506 NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC--PNCIPLWYSLANLEEKRNGLNGLSKARA 583 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~g~~~~A~~ 583 (701)
-++....+|++.+.+---.|.+.+++|.++....-++++.++|++++.++ |.-.++|..+.......++....+.|+.
T Consensus 492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888888888888887778888888888888888888888888888865 4456778777665554333557889999
Q ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHh----cCCCccchhHHHHHHHh
Q 040951 584 VLSVARLKNPLN--PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG--ILWAELIK----MVPHHDRKSKGKDALVK 655 (701)
Q Consensus 584 ~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~l~~~~~~----~~~~~~~~~~~~~al~~ 655 (701)
+|++|++..|.. -.+++.++.++.+.|-...|+.+|+++-...+... .+|.-+|. +..-..-...+++|++.
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 999999988732 25788888898888988999999998876655433 23433332 22334556788999999
Q ss_pred cCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CC-Cccccccc
Q 040951 656 SDRD--PHVFAAVAKLFWHDRKVDKARNWFNKAVSLD-PD-TGDFWALY 700 (701)
Q Consensus 656 ~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~-~~d~w~~~ 700 (701)
-|++ -+.....+.+..+.|+.+.|+.+|..+-++. |. +++.|..|
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTW 700 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHH
Confidence 9865 3456778888899999999999999998874 43 45667654
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-24 Score=214.03 Aligned_cols=373 Identities=15% Similarity=0.114 Sum_probs=291.7
Q ss_pred HhhcCHHHHHHHHHHHHHHCCCCHHHH----HHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040951 254 VEISSEEEARILLHRAVECCPLDVELW----LALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKI 329 (701)
Q Consensus 254 ~~l~~~~~A~~~l~~a~~~~P~~~~l~----~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~ 329 (701)
.+.+.|++|+++|..|++++|+.+-.+ -+|..+|++++.++...++++.+|+...+++..+..++..|++++|..-
T Consensus 126 f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred hhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 344578888888888888888854433 3566778888888888888888888888888888888888887765422
Q ss_pred HHH------------------HHHH---------hhc--CcccCCHHHHHHHHHHHHHc--------CC-------cHHH
Q 040951 330 IER------------------GIRA---------LQG--EEVVIDRDTWMKEAEIAEKA--------GS-------DAEE 365 (701)
Q Consensus 330 ~~~------------------a~~~---------~~~--~~~~~~~~~w~~~a~~~e~~--------~~-------~a~~ 365 (701)
..- .++. +.. .++.+.....-.+-...... +. .+-.
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 211 1110 110 00111111100000000000 00 1111
Q ss_pred HHhcC---CHHHHHHHHHHHHHhC---C-CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 040951 366 CKKRG---SIETARAIFSHACTVF---L-TK---------KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLM 429 (701)
Q Consensus 366 ~~~~~---~~~~A~~~~~~al~~~---p-~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 429 (701)
....+ .|..|...+.+..... + .+ ..++...|.++.-.|+.-.|...|..++..+|.+..+|..
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~ 365 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIK 365 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHH
Confidence 22223 5666666665554332 1 12 3456666788888999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH
Q 040951 430 GAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNA 508 (701)
Q Consensus 430 ~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~ 508 (701)
++.+|...++.++-...|.++...+|.+++++...|++..-.+++++|..-|++++.+.|. .-.+..++-..++++.+.
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 888889999989999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC------CHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN------CIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
++...|+.+.+.+|++++++...|+++..++++++|.+.|..++.+.|. ++..++.-+.+..+. .+++..|.
T Consensus 446 ~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw--k~d~~~a~ 523 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW--KEDINQAE 523 (606)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch--hhhHHHHH
Confidence 9999999999999999999999999999999999999999999999998 666666665554432 68999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 583 AVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
.++.+|++.+|.+..++..+|.+..+.|+.++|+++|+++..+.-.
T Consensus 524 ~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 524 NLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887654
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-25 Score=217.30 Aligned_cols=325 Identities=14% Similarity=0.120 Sum_probs=281.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~ 442 (701)
+.-+.+.|.|++|+.+|..+++..|+.+..+...+-+|...|++++.++...++++.+|+...+++..+..+...|++++
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHH------------------HHH------------HHhC--CCC---------------------------------
Q 040951 443 ARDIL------------------QEA------------YATI--PNS--------------------------------- 457 (701)
Q Consensus 443 A~~~l------------------~~a------------~~~~--p~~--------------------------------- 457 (701)
|+.-+ ++. +..+ |.-
T Consensus 202 al~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 52211 111 1100 000
Q ss_pred --------------------------------------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HH
Q 040951 458 --------------------------------------------EEIWLAAFKLEFENRELERARMLLAKARDMGGT-ER 492 (701)
Q Consensus 458 --------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~ 492 (701)
..+++..|.++...|+.-.|...|+.++...|. ..
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~ 361 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS 361 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch
Confidence 003445566677789999999999999999998 67
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhh
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKR 572 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 572 (701)
.|+.++.+|....+..+-...|.++..++|.++++|+..|+++.-.+++++|..-|++++.++|.++..++.++.+..+
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr- 440 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR- 440 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHH--HhcCCC--
Q 040951 573 NGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN------SGILWAEL--IKMVPH-- 642 (701)
Q Consensus 573 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~l~~~~--~~~~~~-- 642 (701)
++.++++...|+.+.++.|..++++...+.++...++++.|.+.|.+++.+.|. ++..+..- +.+..+
T Consensus 441 --~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 441 --QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh
Confidence 999999999999999999999999999999999999999999999999999998 43333221 212211
Q ss_pred -ccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 643 -HDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 643 -~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 690 (701)
......+.+|++.+|..-.++..+|.+..+.|+.++|+++|+++..+.
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 233446788999999999999999999999999999999999998754
No 24
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.8e-22 Score=234.98 Aligned_cols=531 Identities=13% Similarity=0.056 Sum_probs=330.8
Q ss_pred cchhhhcHHHHHHHHHH---------HHHHHHHHhhhcHHHHHHHHHHHhhh--CCCCHH--HHHHHH-hh---------
Q 040951 139 TNSELRDILKARKIVRA---------IQAARLEELAKEEAAARKLITKGCNM--CPKNED--VWLEAC-RL--------- 195 (701)
Q Consensus 139 ~~~~~~d~~~ar~ll~~---------i~~arl~~~~g~~~~A~~~~~~~~~~--~P~~~~--~wl~~~-~l--------- 195 (701)
.....|++..|+.++.. -..++..-..|++++|..+|.+.... .|+... ..+... ..
T Consensus 130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 35688999999999988 22333345568999999999887642 343222 122211 11
Q ss_pred --------------------------cCcchHHHHHHHHHHhCCCcHHHHHHHHHcccCHHHHHHHHHHHHHh--cCCCH
Q 040951 196 --------------------------ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMALDE--IPDSV 247 (701)
Q Consensus 196 --------------------------~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~~~~~a~~~l~kal~~--~P~~~ 247 (701)
+..+.|..+|.+..+.++.+...++...--..+..+|..+|+++.+. .|+..
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 22334444444433222222222222222222444455555444432 34333
Q ss_pred H---HHHHHHhhcCHHHHHHHHHHHHHHC-CCCHHHHHH----HHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 248 R---LWKALVEISSEEEARILLHRAVECC-PLDVELWLA----LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEA 319 (701)
Q Consensus 248 ~---l~~~~~~l~~~~~A~~~l~~a~~~~-P~~~~l~~~----l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~ 319 (701)
. +...+...++.+.|.+++..+++.. +.+...+.. |++.|++++|.++|+++.. .+...|..+...+.+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~ 366 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHh
Confidence 3 2222333334455555544444321 112222222 3334566666666655432 234456666666666
Q ss_pred cCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 040951 320 NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFL-TKKSIWLKAAQ 398 (701)
Q Consensus 320 ~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~ 398 (701)
.|++++|..+|+++... +..++...+......+ ...|+++.|.++++.+.+... .+..++..+..
T Consensus 367 ~g~~~~A~~lf~~M~~~----g~~Pd~~t~~~ll~a~----------~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 367 NGLPDKALETYALMEQD----NVSPDEITIASVLSAC----------ACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CCCHHHHHHHHHHHHHh----CCCCCceeHHHHHHHH----------hccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 66666666666655432 1112222333333222 566666666666666665532 34456666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Q 040951 399 LEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERAR 478 (701)
Q Consensus 399 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~ 478 (701)
.|.+.|++++|..+|++... .+...|..+...+...|+.++|+.+|+++....+.+...+..+...+...|..+.+.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 77777777777777766532 244566666666667777777777777766544334555556666666667777777
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--
Q 040951 479 MLLAKARDMG--GTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ-- 554 (701)
Q Consensus 479 ~~~~~a~~~~--p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 554 (701)
+++..+++.. ++..+...+...|.+.|++++|...|+.. +.+...|..+...|...|+.++|.++|++..+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7777666543 23445556677888999999999999886 456889999999999999999999999998774
Q ss_pred CCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 555 CPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP--LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGIL 632 (701)
Q Consensus 555 ~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l 632 (701)
.|+. ..+..+...+.+ .|.+++|..+|+.+....+ .+...|..++.++.+.|++++|..++++. ...| +...
T Consensus 586 ~Pd~-~T~~~ll~a~~~---~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~ 659 (857)
T PLN03077 586 NPDE-VTFISLLCACSR---SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAV 659 (857)
T ss_pred CCCc-ccHHHHHHHHhh---cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHH
Confidence 4554 445566667888 9999999999999985543 24478999999999999999999999875 3444 4667
Q ss_pred HHHHHhcCCCccc----hhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcccccc
Q 040951 633 WAELIKMVPHHDR----KSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL--DPDTGDFWAL 699 (701)
Q Consensus 633 ~~~~~~~~~~~~~----~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~d~w~~ 699 (701)
|..++......+. ...+.+.++..|+++..+..++++|...|++++|.++.+...+. .++.|-.|+.
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 7776653322222 23456788999999999999999999999999999999888764 4555666653
No 25
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=3e-21 Score=224.71 Aligned_cols=507 Identities=14% Similarity=0.041 Sum_probs=341.1
Q ss_pred hhhcHHHHHHHHHHHhhhCCCCHHHHHH-HHhhcCcchHHHHHHHHHH--hCCCcHH--HHHHHHHcccCHHHHHHHHHH
Q 040951 164 LAKEEAAARKLITKGCNMCPKNEDVWLE-ACRLARPDEAKGVVAKGVR--QIPKSVR--LWLQAAELDHDKANKSRVLRM 238 (701)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~P~~~~~wl~-~~~l~~~~~A~~~l~~al~--~~P~~~~--lw~~~~~le~~~~~a~~~l~k 238 (701)
..|+++.|..+|++..+.+.......+. +++-+..++|..+|.+..+ ..|+... ..+....-..+...++.++..
T Consensus 133 ~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 4566666666666665433333222222 1233445566666666554 2344332 222222222244445555555
Q ss_pred HHHhc--CCCH---HHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHH-HHHHHhccChHHHHHHHHHHHHhC--CCCHHHH
Q 040951 239 ALDEI--PDSV---RLWKALVEISSEEEARILLHRAVECCPLDVEL-WLALARLETYGVARSVLNKARKKL--PKERAIW 310 (701)
Q Consensus 239 al~~~--P~~~---~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l-~~~l~~l~~~~~A~~~l~~a~~~~--p~~~~~~ 310 (701)
.++.- |+.. .+...|.+.++++.|+.+|.++.+.++..+.. ...+++.|++++|..+|.++.... | +...+
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P-d~~ty 291 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP-DLMTI 291 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHH
Confidence 44421 2111 13344455557777777777765332222211 123445577777777777776643 4 35556
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 311 IAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKK 390 (701)
Q Consensus 311 ~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 390 (701)
..+...+...|+.+.+.+++..+++. +..++...|..+... |.+.|+++.|..+|+.+.. .+.
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~----g~~~d~~~~n~Li~~----------y~k~g~~~~A~~vf~~m~~---~d~ 354 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKT----GFAVDVSVCNSLIQM----------YLSLGSWGEAEKVFSRMET---KDA 354 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh----CCccchHHHHHHHHH----------HHhcCCHHHHHHHHhhCCC---CCe
Confidence 66666667777777777777776653 223334555555543 4888999999999988643 355
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYF--PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN-SEEIWLAAFKL 467 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~-~~~~~~~la~~ 467 (701)
..|..++..+.+.|++++|..+|+++.... |+. ..+..+...+...|+++.|.+++..+.+.... +..++..++..
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 678889999999999999999998886653 443 34555555667788888888888888877533 46677788888
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHH--------------------
Q 040951 468 EFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNL-------------------- 527 (701)
Q Consensus 468 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------- 527 (701)
|.+.|++++|.++|+++.+ ++...|..+...+...|+.++|+.+|++++...+.+...
T Consensus 434 y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 8888888888888887643 445677777778888888888888888877543222222
Q ss_pred ---------------HHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC
Q 040951 528 ---------------WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 528 ---------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
+..+...|.+.|++++|...|... +.+...|..++..+.. .|+.++|..+|+++....
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~---~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA---HGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcC
Confidence 233446777888888888888875 5577889999999999 999999999999988754
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHhcCCCccchhHHHHHHHhcC--CChHHHHHH
Q 040951 593 --PLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN--SGILWAELIKMVPHHDRKSKGKDALVKSD--RDPHVFAAV 666 (701)
Q Consensus 593 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~l~~~~~~~~~~~~~~~~~~~al~~~p--~~~~~~~~l 666 (701)
|+. ..+..+...+.+.|..++|..+|+...+..+- +...|...+.+..+.++...+.+.++..| .++.+|..+
T Consensus 585 ~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 585 VNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred CCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 544 56777778888999999999999998855433 34567777777778888777777777654 357788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 040951 667 AKLFWHDRKVDKARNWFNKAVSLDPDTGDFWAL 699 (701)
Q Consensus 667 g~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~ 699 (701)
-..+...|+.+.|....+++++++|++...+..
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 888889999999999999999999998876653
No 26
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.93 E-value=6.1e-21 Score=193.62 Aligned_cols=419 Identities=17% Similarity=0.242 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHh--hc------Ccc----hHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHH
Q 040951 168 EAAARKLITKGCNMCPKNEDVWLEACR--LA------RPD----EAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANK 232 (701)
Q Consensus 168 ~~~A~~~~~~~~~~~P~~~~~wl~~~~--l~------~~~----~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a 232 (701)
..+-..+++++|+.-|.|..+|-.+.+ .. ..+ .-...|++++..--+-+.+|+.++++.. +...-
T Consensus 42 ~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~t 121 (835)
T KOG2047|consen 42 DKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRT 121 (835)
T ss_pred hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHH
Confidence 445668899999999999999998884 32 123 3446678888877788899999988766 67778
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHhhc----CHHHHHHHHHHHHHHCCCCHHHHHHHH-hccChHHHHHHHHHHH-----
Q 040951 233 SRVLRMALDEIPD--SVRLWKALVEIS----SEEEARILLHRAVECCPLDVELWLALA-RLETYGVARSVLNKAR----- 300 (701)
Q Consensus 233 ~~~l~kal~~~P~--~~~l~~~~~~l~----~~~~A~~~l~~a~~~~P~~~~l~~~l~-~l~~~~~A~~~l~~a~----- 300 (701)
+++|.+||...|- +..+|..|+.+- -++-++.+|.+.++..|.+.+-++.+. ..++.++|.+.|...+
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f 201 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEF 201 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhh
Confidence 8999999998884 344777776543 567888899999999888876665543 3455555555554443
Q ss_pred ---------------------------------------HhCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcC
Q 040951 301 ---------------------------------------KKLPKE-RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGE 340 (701)
Q Consensus 301 ---------------------------------------~~~p~~-~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~ 340 (701)
...|+. ..+|..+|..|.+.|.+++|..+|+.++.....-
T Consensus 202 ~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv 281 (835)
T KOG2047|consen 202 VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV 281 (835)
T ss_pred hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh
Confidence 222321 4689999999999999999999999998853221
Q ss_pred cccCCHHHHHHHHHHHH------------HcCC----------------------------------------cHHHHHh
Q 040951 341 EVVIDRDTWMKEAEIAE------------KAGS----------------------------------------DAEECKK 368 (701)
Q Consensus 341 ~~~~~~~~w~~~a~~~e------------~~~~----------------------------------------~a~~~~~ 368 (701)
... ...+-.++++.+ ..++ .-..-..
T Consensus 282 rDF--t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~ 359 (835)
T KOG2047|consen 282 RDF--TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY 359 (835)
T ss_pred hhH--HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh
Confidence 100 011111111111 1111 1112234
Q ss_pred cCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C---cHHHHHHHHHHHHHcC
Q 040951 369 RGSIETARAIFSHACTV-FLTK-----KSIWLKAAQLEKTHGSRESLIALLRKAVTYFP-Q---AEVLWLMGAKEKWLAG 438 (701)
Q Consensus 369 ~~~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~---~~~~~~~~a~~~~~~g 438 (701)
.|+..+-+..|..++.. +|.. ..+|..++.+|..+|+.+.|+.+|+++++..- . -..+|...|.......
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 45556666666666543 3322 23666666666666666666666666665422 1 1455666666666666
Q ss_pred ChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC-CHHHHHHHHH
Q 040951 439 DVPAARDILQEAYATIPN------------------SEEIWLAAFKLEFENRELERARMLLAKARDMGG-TERVWMKSAI 499 (701)
Q Consensus 439 ~~~~A~~~l~~a~~~~p~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~a~ 499 (701)
+++.|+.++++|...-.. +..+|..++.+....|-++....+|++.++..- +|.+.+.+|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666666666543111 122666666666666666666666666666543 3666666666
Q ss_pred HHHHhCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhhCCCC--HHHHHHHHHHHhhh
Q 040951 500 VERELGNNAEERGFIEEGLKRF--PSFFNLWLMLGQLEE---RLGHLKEAKEAYQSGCNQCPNC--IPLWYSLANLEEKR 572 (701)
Q Consensus 500 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~ 572 (701)
++....-++++.+.|++.+.++ |.-.++|..+-.-.. .....+.|+.+|+++++.||.. -.+++.++.+++.
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe- 598 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE- 598 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 6666666666666666666665 333445544333221 2235566666666666666632 3345666666666
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 040951 573 NGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 573 ~~~g~~~~A~~~~~~a~~~ 591 (701)
.|-...|+++|++|-..
T Consensus 599 --~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 599 --HGLARHAMSIYERATSA 615 (835)
T ss_pred --hhHHHHHHHHHHHHHhc
Confidence 55555565555555443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=5.2e-21 Score=213.46 Aligned_cols=419 Identities=11% Similarity=-0.023 Sum_probs=290.1
Q ss_pred CHHHHHHHHHHHHHhcCCCHHH----HHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHH----HHhccChHHHHHHHHHH
Q 040951 228 DKANKSRVLRMALDEIPDSVRL----WKALVEISSEEEARILLHRAVECCPLDVELWLA----LARLETYGVARSVLNKA 299 (701)
Q Consensus 228 ~~~~a~~~l~kal~~~P~~~~l----~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~----l~~l~~~~~A~~~l~~a 299 (701)
++..|+..|+++++.+|++... ...++..++.++|+..+++++...|.+...... +...+++++|+.+|+++
T Consensus 49 d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 49 DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6667777788888887777422 233345568888888888888434444444442 33447888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHH
Q 040951 300 RKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIF 379 (701)
Q Consensus 300 ~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~ 379 (701)
++.+|+++.++..++.++...++.++|...+++++...|... .++..+.. +...++..+|+..|
T Consensus 129 L~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~------~~l~layL----------~~~~~~~~~AL~~~ 192 (822)
T PRK14574 129 LKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ------NYMTLSYL----------NRATDRNYDALQAS 192 (822)
T ss_pred HhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH------HHHHHHHH----------HHhcchHHHHHHHH
Confidence 888888888888888888888888888888888877655531 11222221 24456666688888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cC------------ChHHHHH
Q 040951 380 SHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL--AG------------DVPAARD 445 (701)
Q Consensus 380 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~--~g------------~~~~A~~ 445 (701)
+++++.+|++..++..+...+...|-...|.++..+--.........|+....+-.. .+ -.+.|+.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 999888898888888888888888888777766554322222222333332222211 11 2355666
Q ss_pred HHHHHHHhC---CCCHH----HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHH
Q 040951 446 ILQEAYATI---PNSEE----IWLAAFKLEFENRELERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEE 516 (701)
Q Consensus 446 ~l~~a~~~~---p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~ 516 (701)
-++..+... |.... +..-....+...+++.+++..|+.+...... +-+....|..|...+.+++|+.+|..
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 677777633 43222 2334555667778888888888887755422 44556667778888888888888888
Q ss_pred HHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC---------------CCHHHHHHHHHHHhhhccC
Q 040951 517 GLKRFPS------FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP---------------NCIPLWYSLANLEEKRNGL 575 (701)
Q Consensus 517 al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~~~~~~~ 575 (701)
++...|. +......+...+...+++++|..++++..+..| +.......++.++.. .
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~---~ 429 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA---L 429 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH---c
Confidence 8776532 222245666777888888888888888877444 114456667777778 8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHh
Q 040951 576 NGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVK 655 (701)
Q Consensus 576 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~ 655 (701)
|+..+|...++..+...|.|+.++..++.++...|.+.+|...++.++...|++
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~-------------------------- 483 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS-------------------------- 483 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc--------------------------
Confidence 888888888888888888888888888888888888888888888887777764
Q ss_pred cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 656 SDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 656 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
..+....|..+...|++.+|......+++..|+++.
T Consensus 484 ----~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 484 ----LILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred ----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 566666667777777777777777777777776653
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-22 Score=196.46 Aligned_cols=362 Identities=16% Similarity=0.110 Sum_probs=296.6
Q ss_pred hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHH
Q 040951 285 RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAE 364 (701)
Q Consensus 285 ~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~ 364 (701)
+++....|+..|..++...|-+..+|..++.+... +.+....+..++.+ ..|+.--- ...
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~------~h~M~~~F-------~~~ 235 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSD------MHWMKKFF-------LKK 235 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCccc------chHHHHHH-------HHH
Confidence 45788999999999999999999999999887642 12333333323322 23332111 122
Q ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951 365 ECKKRGSIETARAIFSHACTV-FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A 443 (701)
.+......++++.-++..... +|.+.-+-...|.+.....++++|+..|+.+.+.+|-..+-.-.+..++.-.++-.+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 345555888999999999988 8998888888899999999999999999999999997766666677776666665554
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
.-+-+.+...+.--++.....|..|...++.++|...|+++++.+|. ..+|..+|.=+.+..+...|+..|++|++.+|
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 44556666677666667777899999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLAT 602 (701)
Q Consensus 523 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 602 (701)
.+..+|+.+|+.|.-++...=|+-+|++++...|+++.+|..+|.+|.+ .++.++|+..|.+++.....+..++..+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k---l~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK---LNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH---hccHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 9999999999999999998899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHH
Q 040951 603 IRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682 (701)
Q Consensus 603 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 682 (701)
|.++.+.++.++|...|++.++..-..+ ...|+-..+..-++..+.+.+++++|-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg-----------------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEG-----------------------EIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhc-----------------------ccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 9999999999999999999998541100 01112234555588888888999999888
Q ss_pred HHHHHHhCCC
Q 040951 683 FNKAVSLDPD 692 (701)
Q Consensus 683 ~~~al~~~p~ 692 (701)
..+++.-++.
T Consensus 530 a~~~~~~~~e 539 (559)
T KOG1155|consen 530 ATLVLKGETE 539 (559)
T ss_pred HHHHhcCCch
Confidence 8888766544
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=3.2e-22 Score=212.69 Aligned_cols=260 Identities=15% Similarity=0.148 Sum_probs=237.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCChH
Q 040951 366 CKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA----EVLWLMGAKEKWLAGDVP 441 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~ 441 (701)
+...|++++|+..|+++++.+|++..++..++.++...|++++|...+++++...+.. ...+..++.++...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3778999999999999999999999999999999999999999999999998754322 256888999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhCChHHHHHHHH
Q 040951 442 AARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT------ERVWMKSAIVERELGNNAEERGFIE 515 (701)
Q Consensus 442 ~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~a~~~~~~g~~~~A~~~~~ 515 (701)
+|+.+|+++++..|.+..++..++.++...|++++|+..+++++...|. ...+..++.++...|++++|+.+|+
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999998999999999999999999999999999987765 2245677888899999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC
Q 040951 516 EGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 594 (701)
++++..|++...++.+|.++...|++++|.+.|++++...|.+ ..++..++.++.. .|++++|...+++++...|+
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA---LGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999988876 4567889999999 99999999999999999998
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 595 NPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 595 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
.. .+..++.++...|++++|..+++++++..|++
T Consensus 282 ~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 282 AD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred ch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 75 44889999999999999999999999999873
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.6e-23 Score=214.82 Aligned_cols=296 Identities=16% Similarity=0.116 Sum_probs=273.5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
...-+..+|+..|++.-...++..-+...+|..|...+++++|..+|+.+-...|-...-.-.+..++|...+.-+--.+
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 34445688999999977778888888889999999999999999999999999998777777777888887766555556
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF 525 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 525 (701)
-+..+..+|++++.|..+|.++..+++++.|++.|++++..+|. .-+|..+|.=+.....+++|..+|+.++..+|.+.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 68888999999999999999999999999999999999999998 88888889888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
.+|+.+|.+|.++++++.|.-.|++|+.++|.+..+...++.++.+ .|+.++|+.+|++|+..+|.++-.-+..+.+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~---~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ---LKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH---hhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 606 ESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
+...+++++|...+++.-+..|+ +..+++.+|.+|.+.|+.+.|+.-|.=
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~------------------------------es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQ------------------------------ESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcc------------------------------hHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 99999999999999999888887 588999999999999999999999999
Q ss_pred HHHhCCCCcc
Q 040951 686 AVSLDPDTGD 695 (701)
Q Consensus 686 al~~~p~~~d 695 (701)
|..++|.-.+
T Consensus 617 A~~ldpkg~~ 626 (638)
T KOG1126|consen 617 ALDLDPKGAQ 626 (638)
T ss_pred HhcCCCccch
Confidence 9999997544
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-21 Score=192.12 Aligned_cols=352 Identities=16% Similarity=0.057 Sum_probs=289.6
Q ss_pred hhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040951 255 EISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPK--ERAIWIAAAKLEEANGNTSMVGKIIER 332 (701)
Q Consensus 255 ~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~a~~~~~~ 332 (701)
+.+....|+..|..++...|-.+.+|..|..+-...+-...+ ....|. +.-.-+.+..++......+++..-..+
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l---~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~ 252 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL---VVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKER 252 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH---HhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788999999999999999999999988875443333333 333442 222333445555555556666666666
Q ss_pred HHHH-hhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040951 333 GIRA-LQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411 (701)
Q Consensus 333 a~~~-~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 411 (701)
.+.. +|... ...... |.....+.++++|+..|+.+++.+|-..+-.-.+.+++.-..+-.+..-
T Consensus 253 l~~~gf~~~~------~i~~~~---------A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 253 LSSVGFPNSM------YIKTQI---------AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHhccCCccH------HHHHHH---------HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 6554 33331 111111 2234788999999999999999999888777777777776666666666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-
Q 040951 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT- 490 (701)
Q Consensus 412 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~- 490 (701)
+.+.+...+.-.++.....|..|...++.++|+.+|+++++.||....+|..+|.-|.+.++...|+..|.+|++++|.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence 6677777777778888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
-++|+.+|+.|...+-..-|+-+|++++..-|+++.+|..+|++|.+.++.++|+++|.+++.....+..++..+|.++.
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 571 KRNGLNGLSKARAVLSVARLK-------NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
+ .++..+|...|++.++. .|+...+...++..+.+.+++++|..+..+++.-.+
T Consensus 478 ~---l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 478 E---LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred H---HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 9 99999999999999983 355556777799999999999999998888876644
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=5.6e-20 Score=194.47 Aligned_cols=535 Identities=14% Similarity=0.047 Sum_probs=340.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhc----CcchHHHHHHHHHHhCCCcHHHHHHHHHccc---C
Q 040951 156 IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLA----RPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---D 228 (701)
Q Consensus 156 i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~----~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~ 228 (701)
++.|..--..|+++.|..++.++++.+|.+...|-..+.+. ..+.|....-.|--.+|++..+|..++++.. +
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 34444444559999999999999999999999998877762 3457777777788889999999999998765 6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH----hhcCHHHHHHHHHHHHHHCCCCHHHHH-H--------HHhccChHHHHHH
Q 040951 229 KANKSRVLRMALDEIPDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWL-A--------LARLETYGVARSV 295 (701)
Q Consensus 229 ~~~a~~~l~kal~~~P~~~~l~~~~~----~l~~~~~A~~~l~~a~~~~P~~~~l~~-~--------l~~l~~~~~A~~~ 295 (701)
...|+-+|.||++.+|.++++....+ +.++...|...|.+++..+|...--|. . +...++-+.|.+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88999999999999999988544333 445899999999999999994322221 1 2233555889999
Q ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhh---------------------cCc--ccCCHHH-H
Q 040951 296 LNKARKKL--PKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQ---------------------GEE--VVIDRDT-W 349 (701)
Q Consensus 296 l~~a~~~~--p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~---------------------~~~--~~~~~~~-w 349 (701)
++.++... -.+.+....++.++.....++.+...+......-. ..+ ...+... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 99998833 33455566788888888888888877766655100 000 0111111 1
Q ss_pred HHHHHHHHHcCC-------------------------cHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Q 040951 350 MKEAEIAEKAGS-------------------------DAEECKKRGSIETARAIFSHACTVFLT-KKSIWLKAAQLEKTH 403 (701)
Q Consensus 350 ~~~a~~~e~~~~-------------------------~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 403 (701)
+..+....+.+. .++.+...|.+..|+.+|..++...+. +..+|..+|.++...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 111111111111 356667777777777777777766553 345777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCcH
Q 040951 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSE---------EIWLAAFKLEFENREL 474 (701)
Q Consensus 404 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~---------~~~~~la~~~~~~~~~ 474 (701)
|.++.|...|++++...|.+.++...++.++.+.|+.++|.+.++..+.-+|.+. .+......++...|+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 7777777777777777777777777777777777777777777777653222111 1333445555555554
Q ss_pred HHHHHHHHHHHh-------cCCC--------------------------------------------------------H
Q 040951 475 ERARMLLAKARD-------MGGT--------------------------------------------------------E 491 (701)
Q Consensus 475 ~~A~~~~~~a~~-------~~p~--------------------------------------------------------~ 491 (701)
++=+.+...++. .+|. .
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 432222211111 0010 0
Q ss_pred ----HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----CC
Q 040951 492 ----RVWMKSAIVERELGNNAEERGFIEEGLKRFPS--FF----NLWLMLGQLEERLGHLKEAKEAYQSGCNQ-----CP 556 (701)
Q Consensus 492 ----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p 556 (701)
.++..+...+...+.+.+|..+...++...-- ++ .+-+....+....+++..|...++..+.. +|
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 12222333445556666666666555543211 11 12222223344556677777766666665 55
Q ss_pred CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN-PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 557 ~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
....+|...-..... .++-.-=...+.++...+|++ +......|......+.+..|...|-++...+|++|..-..
T Consensus 703 ~q~~l~n~~~s~~~~---~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~ 779 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSK---YGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLC 779 (895)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHH
Confidence 555555543333333 444444445555555666665 5666667777888899999999999999999999965443
Q ss_pred HH--hcC----CC-ccchh-------HHHH--HHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 636 LI--KMV----PH-HDRKS-------KGKD--ALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 636 ~~--~~~----~~-~~~~~-------~~~~--al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
.+ ++. .+ ..+.. ...+ -++.+.+.-++.+++|+.|...|=.--|..+|++++...|..
T Consensus 780 lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 780 LGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKD 853 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccc
Confidence 22 111 11 11111 1222 223344578899999999999999999999999999998753
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=2.3e-20 Score=208.31 Aligned_cols=428 Identities=12% Similarity=0.031 Sum_probs=312.3
Q ss_pred HHhhhcHHHHHHHHHHHhhhCCCCHHH---HH-HHHhhcCcchHHHHHHHHHHhCCCcHHHHHHHHH---cccCHHHHHH
Q 040951 162 EELAKEEAAARKLITKGCNMCPKNEDV---WL-EACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAE---LDHDKANKSR 234 (701)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~P~~~~~---wl-~~~~l~~~~~A~~~l~~al~~~P~~~~lw~~~~~---le~~~~~a~~ 234 (701)
.-..|++..|...|.++++.+|.+... |+ .++.++..++|...+++++...|.+.......+. ...+++.|..
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 445799999999999999999998432 33 2334577889999999999545555555543333 3348999999
Q ss_pred HHHHHHHhcCCCHHHHHHHH----hhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCCC
Q 040951 235 VLRMALDEIPDSVRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLPKE 306 (701)
Q Consensus 235 ~l~kal~~~P~~~~l~~~~~----~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~ 306 (701)
+|+++++.+|+++.++..++ ..++.++|+..+++++...|..... ..++.+ ++..+|...++++++.+|++
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99999999999998766543 4459999999999999999996554 443332 56667999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC--cHH--HHHhcCCHHHHHHHHHHH
Q 040951 307 RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS--DAE--ECKKRGSIETARAIFSHA 382 (701)
Q Consensus 307 ~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~--~a~--~~~~~~~~~~A~~~~~~a 382 (701)
.+++..+.......|-...|.+..++--..+... -..|+......+.... ... .-.+---.+.|++-++.+
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~-----~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAE-----HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHH-----HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999998888876666532221111 2234433322211100 000 000011346677788888
Q ss_pred HHhC---CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 040951 383 CTVF---LTKKS----IWLKAAQLEKTHGSRESLIALLRKAVTYF-PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI 454 (701)
Q Consensus 383 l~~~---p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~ 454 (701)
+... |.... +.....-++...|++.+++..|+.+-... |--..+....|..|...+.+++|..+|.+++...
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 8743 43322 23344455667889999999999887554 3344566778888889999999999999998865
Q ss_pred C------CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC-------------C---HHHHHHHHHHHHHhCChHHHHH
Q 040951 455 P------NSEEIWLAAFKLEFENRELERARMLLAKARDMGG-------------T---ERVWMKSAIVERELGNNAEERG 512 (701)
Q Consensus 455 p------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p-------------~---~~~~~~~a~~~~~~g~~~~A~~ 512 (701)
| .+......+...+...+++++|..++++..+..| + ......++.++...|++.+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 2233346778888899999999999999887444 1 4556666777778888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC
Q 040951 513 FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 513 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
.+++.+...|.++.+++.+|.++...|.+.+|...++.+....|++..+....+..... .+++.+|....+.++...
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~---l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA---LQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh---hhhHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888888888888888888888 888888888888888888
Q ss_pred CCCHHH
Q 040951 593 PLNPEI 598 (701)
Q Consensus 593 p~~~~~ 598 (701)
|+++.+
T Consensus 515 Pe~~~~ 520 (822)
T PRK14574 515 PEDIPS 520 (822)
T ss_pred CCchhH
Confidence 888743
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.9e-22 Score=208.92 Aligned_cols=267 Identities=16% Similarity=0.120 Sum_probs=163.9
Q ss_pred HHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCc
Q 040951 283 LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSD 362 (701)
Q Consensus 283 l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~ 362 (701)
+...+++++|...|.++++.+|++..++..++.++...|++++|..++++++...+... ......+..++.
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~La~-------- 115 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR-EQRLLALQELGQ-------- 115 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHH--------
Confidence 33447888888888888888888888888888888888888888888888776311110 001123333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHc
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE-----VLWLMGAKEKWLA 437 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~ 437 (701)
.+...|+++.|+.+|+++++..|.+..++..++.++...|++++|...+++++...|.+. ..+..++.++...
T Consensus 116 --~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 116 --DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred --HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 336667777777777777776666666777777777777777777777777766655432 2344555555566
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHH
Q 040951 438 GDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIE 515 (701)
Q Consensus 438 g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~ 515 (701)
|++++|+..|+++++.+|++..++..++.++...|++++|...|+++....|. ..++..++.++...|++++|+..++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666666666666556666666666666666666666666555444 3344455555555555555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH
Q 040951 516 EGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL 561 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 561 (701)
++++..|+... +..++.++...|++++|...++++++..|++..+
T Consensus 274 ~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 274 RALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred HHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 55555554322 2455555555555555555555555555554433
No 35
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=4.4e-20 Score=209.85 Aligned_cols=392 Identities=15% Similarity=0.077 Sum_probs=295.8
Q ss_pred HHHhhcCHHHHHHHHHHHHHHCCCCHH-HHHHHHhccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 040951 252 ALVEISSEEEARILLHRAVECCPLDVE-LWLALARLETYGVARSVLNKARKKLPK-ERAIWIAAAKLEEANGNTSMVGKI 329 (701)
Q Consensus 252 ~~~~l~~~~~A~~~l~~a~~~~P~~~~-l~~~l~~l~~~~~A~~~l~~a~~~~p~-~~~~~~~~a~~~~~~g~~~~a~~~ 329 (701)
.|.+.++++.|.++|.++.+.+..... +...+++.|++++|..+|+++++..+. +...+..+...+...|....+..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 344555788888888776542222222 223456668888888888888776532 456677777778888888888888
Q ss_pred HHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 040951 330 IERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESL 409 (701)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 409 (701)
+..+++..- .++...+..+... |.+.|++++|..+|+... +.+...|..++..+.+.|++++|
T Consensus 247 ~~~~~~~g~----~~d~~~~n~Li~~----------y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 247 HCCVLKTGV----VGDTFVSCALIDM----------YSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHHhCC----CccceeHHHHHHH----------HHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHH
Confidence 777766422 2223344444433 488899999999988763 44677899999999999999999
Q ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 040951 410 IALLRKAVTYF-PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI-PNSEEIWLAAFKLEFENRELERARMLLAKARDM 487 (701)
Q Consensus 410 ~~~~~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 487 (701)
..+|+++.... ..+...+..+...+...|++++|.+++..+.+.. +.+..++..++..|.+.|++++|.++|+++.+
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~- 388 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR- 388 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-
Confidence 99998887652 3355678888888888999999999999888876 44677788899999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC--CCHHHHH
Q 040951 488 GGTERVWMKSAIVERELGNNAEERGFIEEGLKRF--PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP--NCIPLWY 563 (701)
Q Consensus 488 ~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 563 (701)
|+...|..++..|...|+.++|+.+|+++.... |+ ...+..+...+...|..++|.++|+...+..+ .+...|.
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 566788888888899999999999999887754 44 66778888888899999999999998876432 2345688
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCc
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHH 643 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~ 643 (701)
.++..+.+ .|++++|.++++++- ..| +..+|..+...+...|+.+.|..++++.++..|+
T Consensus 467 ~li~~l~r---~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~--------------- 526 (697)
T PLN03081 467 CMIELLGR---EGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE--------------- 526 (697)
T ss_pred hHHHHHHh---cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC---------------
Confidence 88888888 999999998887641 223 4567888888888999999999988888877775
Q ss_pred cchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCccccc
Q 040951 644 DRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLD--PDTGDFWA 698 (701)
Q Consensus 644 ~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~d~w~ 698 (701)
++..+..++.+|...|++++|.++++...+.. +..|-.|+
T Consensus 527 ---------------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 527 ---------------KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred ---------------CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 46677888999999999999999999887653 33455564
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-22 Score=206.43 Aligned_cols=264 Identities=14% Similarity=0.056 Sum_probs=238.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~ 442 (701)
|..|+..++|++|..+|+.+-+..|-.....-.+..+++...+.-+.-.+.+..+..+|..|+.|..+|.++..+++.+.
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~ 439 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDT 439 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHH
Confidence 34568888888888888888888887666555666666666665555566677788899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
|++.|++|++.+|+..-++..+|.-+....+++.|...|+.++...|. -.+|+.+|.+|.++++++.|.-.|++|+.++
T Consensus 440 Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 440 AIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred HHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC
Confidence 999999999999998889999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLA 601 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 601 (701)
|.+..+...+|.++.+.|+.++|+.+|++|+..+|.++-..+..+.++.. .+++++|...+++..+..|++..++..
T Consensus 520 P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~---~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 520 PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS---LGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh---hcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 602 TIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 602 l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
+|.+|.+.|+.+.|+..|.-|+..+|.-
T Consensus 597 lgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 597 LGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 9999999999999999999999999963
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1e-20 Score=190.15 Aligned_cols=441 Identities=18% Similarity=0.119 Sum_probs=319.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH--CCCCHHHHHH--HHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChh
Q 040951 249 LWKALVEISSEEEARILLHRAVEC--CPLDVELWLA--LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTS 324 (701)
Q Consensus 249 l~~~~~~l~~~~~A~~~l~~a~~~--~P~~~~l~~~--l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~ 324 (701)
+|...+....|.-|.-+-+|+..+ +|.+. .|.+ +.-.++++.|...++.- +....+......++.++.....++
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~-~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~ 99 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLTNDPADI-YWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWD 99 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccCChHHH-HHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455455555677777777776543 44432 3333 22235777776665543 444556777777888888888888
Q ss_pred HHHHHHHHHHH------HhhcC-cccC-CHHHHHHHHHHHHHcCC--cHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 325 MVGKIIERGIR------ALQGE-EVVI-DRDTWMKEAEIAEKAGS--DAEECKKRGSIETARAIFSHACTVFLTKKSIWL 394 (701)
Q Consensus 325 ~a~~~~~~a~~------~~~~~-~~~~-~~~~w~~~a~~~e~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 394 (701)
.|..++.++-. ..+.+ ...+ .-..|.......+..-. .+.+|....+.++|+..|.+++..++.+.++..
T Consensus 100 ~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~ 179 (611)
T KOG1173|consen 100 QALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFE 179 (611)
T ss_pred HHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHH
Confidence 88877774410 01111 0000 00001000000000000 456678888999999999999999998887776
Q ss_pred HHHHHHHHcC-----------------CH-HHHHHHHHHH---------HHhCC--------CcHHHHHHHHHHHHHcCC
Q 040951 395 KAAQLEKTHG-----------------SR-ESLIALLRKA---------VTYFP--------QAEVLWLMGAKEKWLAGD 439 (701)
Q Consensus 395 ~la~~~~~~g-----------------~~-~~A~~~~~~a---------l~~~p--------~~~~~~~~~a~~~~~~g~ 439 (701)
.+...++..- .. +.....|+-. +...| .+.++....+..+...++
T Consensus 180 ~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~ 259 (611)
T KOG1173|consen 180 KLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCR 259 (611)
T ss_pred HHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcCh
Confidence 6654333211 11 1112222211 01112 456777788888889999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGL 518 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al 518 (701)
+.+..++++..++.+|-+...+.....++.+.|+..+-..+-.+..+..|+ +-.|+..|.+|...|++.+|+.+|.++.
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence 999999999999999988777766555888888888888888888889998 8899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 519 KRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 519 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
.++|.....|..+|..+.-.|..++|+..|..|-+..|.+....+.+|.=+.+ .+++..|..+|.+|+...|.+|-+
T Consensus 340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~---t~n~kLAe~Ff~~A~ai~P~Dplv 416 (611)
T KOG1173|consen 340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR---TNNLKLAEKFFKQALAIAPSDPLV 416 (611)
T ss_pred hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH---hccHHHHHHHHHHHHhcCCCcchh
Confidence 99999999999999999999999999999999999999887777778888888 899999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----C---HHHHHHHHhcCC----CccchhHHHHHHHhcCCChHHHHHHH
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQKCPN----S---GILWAELIKMVP----HHDRKSKGKDALVKSDRDPHVFAAVA 667 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~---~~l~~~~~~~~~----~~~~~~~~~~al~~~p~~~~~~~~lg 667 (701)
...+|.+....+.+.+|..+|+.++..-+. . ..+|.+++.... -......++++|.++|.++.++..+|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 999999999999999999999999854322 2 133444443332 24445578889999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 040951 668 KLFWHDRKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 668 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 694 (701)
.+|...|+++.|++.|.+++-++|++.
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 999999999999999999999999873
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=9.1e-19 Score=200.95 Aligned_cols=463 Identities=12% Similarity=0.039 Sum_probs=349.3
Q ss_pred hHHHHHHHHHHhCCCcH---HHHHHHHHcccCHHHHHHHHHHHHHhcCCCH--H----HHHHHHhhcCHHHHHHHHHHHH
Q 040951 200 EAKGVVAKGVRQIPKSV---RLWLQAAELDHDKANKSRVLRMALDEIPDSV--R----LWKALVEISSEEEARILLHRAV 270 (701)
Q Consensus 200 ~A~~~l~~al~~~P~~~---~lw~~~~~le~~~~~a~~~l~kal~~~P~~~--~----l~~~~~~l~~~~~A~~~l~~a~ 270 (701)
.+...+..++...++.. .++..+++ ..+..+|.++|+.+.+...-.+ - ++..+...+..++|..++....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 355 NSLAAYNGGVSGKRKSPEYIDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhHHHhccccCCCCCchHHHHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 44455555665555533 23333332 2377899999999887653322 1 3334455568999999888776
Q ss_pred HHCCCCHHHHH----HHHhccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCC
Q 040951 271 ECCPLDVELWL----ALARLETYGVARSVLNKARKKLP-KERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVID 345 (701)
Q Consensus 271 ~~~P~~~~l~~----~l~~l~~~~~A~~~l~~a~~~~p-~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~ 345 (701)
. |+ ...|. .+++.++++.|..+|+.+.+... .+...|..+...+.+.|+.+.|..+|+.+.+. +..++
T Consensus 434 ~--pd-~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~----Gv~Pd 506 (1060)
T PLN03218 434 N--PT-LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA----GVEAN 506 (1060)
T ss_pred C--CC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCC
Confidence 4 54 34443 45667999999999999988753 36889999999999999999999999998763 33445
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC
Q 040951 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVF-LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY---FP 421 (701)
Q Consensus 346 ~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p 421 (701)
...|..+...+ .+.|++++|..+|+.+.... .-+...|..+...+.+.|++++|..+|.++... ..
T Consensus 507 vvTynaLI~gy----------~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 507 VHTFGALIDGC----------ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred HHHHHHHHHHH----------HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 77888877655 89999999999999997654 225678999999999999999999999999763 12
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CCCHHHHHHHH
Q 040951 422 QAEVLWLMGAKEKWLAGDVPAARDILQEAYATI-PNSEEIWLAAFKLEFENRELERARMLLAKARDM--GGTERVWMKSA 498 (701)
Q Consensus 422 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~a 498 (701)
.+...|..+...+.+.|++++|.++|+.+.+.+ +.+...|..++..|.+.|++++|..+|.++... .|+...|..+.
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345778888899999999999999999999887 446789999999999999999999999999986 57788888999
Q ss_pred HHHHHhCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-CCCCHHHHHHHHHHHhhhccCC
Q 040951 499 IVERELGNNAEERGFIEEGLKRF-PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ-CPNCIPLWYSLANLEEKRNGLN 576 (701)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~g 576 (701)
..+...|++++|..++..+.+.. +.+...|..+...|.+.|++++|.++|+..... ...+...|..++..+.+ .|
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k---~G 733 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE---GN 733 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CC
Confidence 99999999999999999999875 345889999999999999999999999998653 23356789999999999 99
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHhcCCCccchhHHHHHHH
Q 040951 577 GLSKARAVLSVARLKN-PLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN-SGILWAELIKMVPHHDRKSKGKDALV 654 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~l~~~~~~~~~~~~~~~~~~~al~ 654 (701)
++++|..+|+++.... ..+...|..+...+.+.|+++.|..++.++++.... +...+...+.+.. ..+.++..
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~-----~~y~ka~~ 808 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL-----RRFEKACA 808 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----HHHHHHhh
Confidence 9999999999987653 235577888889999999999999999999876432 3334444332211 11222222
Q ss_pred hcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 655 KSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 655 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 690 (701)
... ....+..+......+..+.|..+|++.++..
T Consensus 809 l~~--~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 809 LGE--PVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred hhh--hhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 210 1111112222223345678999999988753
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=1.3e-23 Score=211.61 Aligned_cols=270 Identities=24% Similarity=0.293 Sum_probs=123.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY--FPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIW 461 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~ 461 (701)
+..|. ...+.+|.++...|++++|..++.+.+.. .|+++.+|..++.+.+..++++.|+..|++++..++.++..+
T Consensus 4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34565 34457799999999999999999776655 488999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Q 040951 462 LAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRF--PSFFNLWLMLGQLEERLG 539 (701)
Q Consensus 462 ~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~ 539 (701)
..++.+ ...+++++|..+++++.+..+++..+..++.++...++++++..+++++.... |.++.+|..+|.++.+.|
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 888888 78999999999999998888778888888889999999999999999977654 678999999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040951 540 HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFI 619 (701)
Q Consensus 540 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 619 (701)
++++|+..|+++++..|+++.++..++.++.. .|+.++++..+.......|.++.+|..+|.++...|++++|...|
T Consensus 161 ~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~---~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPDDPDARNALAWLLID---MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT---TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 99999999999999999999999999999999 999999999999999988999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 620 AKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 620 ~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
++++...|+ ||.++..+|.++...|+.++|..++.+++..
T Consensus 238 ~~~~~~~p~------------------------------d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 238 EKALKLNPD------------------------------DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHSTT-------------------------------HHHHHHHHHHHT------------------
T ss_pred ccccccccc------------------------------ccccccccccccccccccccccccccccccc
Confidence 999998887 5999999999999999999999999998764
No 40
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=7.5e-19 Score=201.63 Aligned_cols=442 Identities=14% Similarity=0.078 Sum_probs=342.9
Q ss_pred CHHHHHHHHHHHHHhcCCCHH---HHHHHHhhcCHHHHHHHHHHHHHHCCCCHH------HHHHHHhccChHHHHHHHHH
Q 040951 228 DKANKSRVLRMALDEIPDSVR---LWKALVEISSEEEARILLHRAVECCPLDVE------LWLALARLETYGVARSVLNK 298 (701)
Q Consensus 228 ~~~~a~~~l~kal~~~P~~~~---l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~------l~~~l~~l~~~~~A~~~l~~ 298 (701)
+...+...++..+...++... ++..+.+.+++++|+.+|+.+.+...-.+. +...+.+.+..++|..++..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 352 EEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334456666666666665444 566666768999999999999876533222 22234556889999999887
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHH
Q 040951 299 ARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAI 378 (701)
Q Consensus 299 a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~ 378 (701)
... | +...|..+...+.+.|+.+.|..+|..+.+. +..++...|..+...+ .+.|+++.|..+
T Consensus 432 M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~----Gl~pD~~tynsLI~~y----------~k~G~vd~A~~v 494 (1060)
T PLN03218 432 IRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEA----GLKADCKLYTTLISTC----------AKSGKVDAMFEV 494 (1060)
T ss_pred cCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHH----------HhCcCHHHHHHH
Confidence 765 5 5788999999999999999999999998774 2344566777766555 899999999999
Q ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Q 040951 379 FSHACTVFL-TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYF-PQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT--- 453 (701)
Q Consensus 379 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~--- 453 (701)
|+.+.+... .+...|..++..+.+.|++++|..+|..+.... ..+...|..+...+.+.|++++|.++|.++...
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 999987653 377899999999999999999999999997653 235778999999999999999999999999763
Q ss_pred -CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh--CCCCHHHH
Q 040951 454 -IPNSEEIWLAAFKLEFENRELERARMLLAKARDMG--GTERVWMKSAIVERELGNNAEERGFIEEGLKR--FPSFFNLW 528 (701)
Q Consensus 454 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 528 (701)
.|+ ...|..+...|.+.|++++|.++|+.+.+.. |+...|..+...+.+.|++++|..+|.++... .|+ ...|
T Consensus 575 i~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~Ty 652 (1060)
T PLN03218 575 IDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFF 652 (1060)
T ss_pred CCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHH
Confidence 354 6788899999999999999999999999865 45889999999999999999999999999887 355 7789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhC-CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 040951 529 LMLGQLEERLGHLKEAKEAYQSGCNQC-PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN-PLNPEIWLATIRAE 606 (701)
Q Consensus 529 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 606 (701)
..+...+.+.|++++|.++++.+.+.. +.+...|..++..|.+ .|++++|..+|+.+.... ..+...|..++..|
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k---~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN---AKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999998754 4567889999999999 999999999999987643 23568899999999
Q ss_pred HhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHhcCCCccchh----HHHHHHHhc-CCChHHHHHHHHHHHhcCCHHHHH
Q 040951 607 SKHGNKKEADSFIAKALQK-CPNSGILWAELIKMVPHHDRKS----KGKDALVKS-DRDPHVFAAVAKLFWHDRKVDKAR 680 (701)
Q Consensus 607 ~~~g~~~~A~~~~~~al~~-~p~~~~l~~~~~~~~~~~~~~~----~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 680 (701)
.+.|++++|..+|.++... ...+...|...+....+.+... .+...++.. ..|..++..+..++. +.+++|.
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~ 807 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKAC 807 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHh
Confidence 9999999999999998764 2233445555554433333333 333333332 123444544433322 4577777
Q ss_pred HHHHHHHHhCCCC
Q 040951 681 NWFNKAVSLDPDT 693 (701)
Q Consensus 681 ~~~~~al~~~p~~ 693 (701)
...+..+..++.+
T Consensus 808 ~l~~~v~~f~~g~ 820 (1060)
T PLN03218 808 ALGEPVVSFDSGR 820 (1060)
T ss_pred hhhhhhhhhhccc
Confidence 7777766665543
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=1e-19 Score=206.93 Aligned_cols=434 Identities=12% Similarity=0.020 Sum_probs=348.4
Q ss_pred hhcHHHHHHHHHHHhhhCCC--CHHHH---HH-HHhhcCcchHHHHHHHHHHh--CCCcHHHHHHHHHccc---CHHHHH
Q 040951 165 AKEEAAARKLITKGCNMCPK--NEDVW---LE-ACRLARPDEAKGVVAKGVRQ--IPKSVRLWLQAAELDH---DKANKS 233 (701)
Q Consensus 165 ~g~~~~A~~~~~~~~~~~P~--~~~~w---l~-~~~l~~~~~A~~~l~~al~~--~P~~~~lw~~~~~le~---~~~~a~ 233 (701)
.|++++|..+|.......|. +...+ +. .++....+.++.++...++. .| ++..+..++.... +.+.|.
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHH
Confidence 57888888888887765432 33332 22 23445667888898888764 45 4566666665544 888999
Q ss_pred HHHHHHHHhcCCCHH-HHHHHHhhcCHHHHHHHHHHHHHHC--CCCH---HHHHHHHhccChHHHHHHHHHHHHhC-CCC
Q 040951 234 RVLRMALDEIPDSVR-LWKALVEISSEEEARILLHRAVECC--PLDV---ELWLALARLETYGVARSVLNKARKKL-PKE 306 (701)
Q Consensus 234 ~~l~kal~~~P~~~~-l~~~~~~l~~~~~A~~~l~~a~~~~--P~~~---~l~~~l~~l~~~~~A~~~l~~a~~~~-p~~ 306 (701)
++|++..+.+.-... +...+.+.+++++|..+|.++.+.. |+.. .+..+++..+..+.+.+++..+.+.. ..+
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 999998753332322 4445667779999999999998754 3322 12234556688999999988887765 346
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 307 RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVF 386 (701)
Q Consensus 307 ~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 386 (701)
..++..+...|.+.|+.++|..+|+.... . +...|..+...+ .+.|++++|..+|+++....
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~----~~vt~n~li~~y----------~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE----K----TTVAWNSMLAGY----------ALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----C----ChhHHHHHHHHH----------HhCCCHHHHHHHHHHHHHcC
Confidence 77889999999999999999999987632 1 255787777555 89999999999999997653
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 387 -LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYF-PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAA 464 (701)
Q Consensus 387 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~l 464 (701)
.-+...+..+...+.+.|.+++|..++..+++.. +.+..++..+...|.+.|++++|..+|+++.+ | +...|..+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~l 397 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNAL 397 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHH
Confidence 2355688899999999999999999999999875 56778899999999999999999999998864 3 46789999
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 040951 465 FKLEFENRELERARMLLAKARDM--GGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPS--FFNLWLMLGQLEERLGH 540 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~ 540 (701)
+..|...|+.++|.++|+++... .|+...+..+...+...|..++|..+|+.+.+..+- +...|..++.++.+.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 99999999999999999999874 477888888888899999999999999999875432 35688899999999999
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 541 LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
+++|.+++++. ...| +...|..+...+.. .|+++.|...+++++...|++...|..++.+|.+.|++++|.++++
T Consensus 478 ~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~---~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 478 LDEAYAMIRRA-PFKP-TVNMWAALLTACRI---HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH---cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999875 2333 45679999999999 9999999999999999999998999999999999999999999999
Q ss_pred HHHHh
Q 040951 621 KALQK 625 (701)
Q Consensus 621 ~al~~ 625 (701)
...+.
T Consensus 553 ~m~~~ 557 (697)
T PLN03081 553 TLKRK 557 (697)
T ss_pred HHHHc
Confidence 88765
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=1e-19 Score=192.61 Aligned_cols=322 Identities=18% Similarity=0.168 Sum_probs=267.4
Q ss_pred HHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCc
Q 040951 283 LARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSD 362 (701)
Q Consensus 283 l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~ 362 (701)
+++ |++++|..++..+++.+|.++.+|..+|.+++++|+..++....-.|....|++ ...|...+...
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d-----~e~W~~ladls------ 217 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD-----YELWKRLADLS------ 217 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHH------
Confidence 344 999999999999999999999999999999999999999998888887776666 68899998777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA-----EVLWLMGAKEKWLA 437 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~ 437 (701)
.++|++.+|+-+|.++++.+|.+.......+.++.++|+...|...|.+++..+|.. .......++.+...
T Consensus 218 ----~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 218 ----EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred ----HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999943 23445567778888
Q ss_pred CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----------------------cC--CC-
Q 040951 438 GDVPAARDILQEAYATIPN--SEEIWLAAFKLEFENRELERARMLLAKARD----------------------MG--GT- 490 (701)
Q Consensus 438 g~~~~A~~~l~~a~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----------------------~~--p~- 490 (701)
++.+.|.+.++.++....+ +.+-...++.++.....++.|......... .. |.
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999999999984322 444566788899999999999988777665 11 11
Q ss_pred ----HHH-HHHHHHHHHHhCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC-CHHHHH
Q 040951 491 ----ERV-WMKSAIVERELGNNAEERGFIEEGLKRFPS-FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN-CIPLWY 563 (701)
Q Consensus 491 ----~~~-~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 563 (701)
..+ ...++.+....++..+++..+..--...|. .+.+++.++..+...|++..|+.+|..++...+. +..+|+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 123 333444444445555554443322222243 5889999999999999999999999999887665 467899
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKAL 623 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 623 (701)
.+|.++.. .|.++.|+..|++++...|++.++...++.++.+.|++++|.+.++...
T Consensus 454 ~~a~c~~~---l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYME---LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHH---HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999 9999999999999999999999999999999999999999999998876
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-19 Score=182.92 Aligned_cols=264 Identities=17% Similarity=0.074 Sum_probs=240.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A 443 (701)
+.+...+++.+...+.+..++.+|-+...+.....++...|+..+...+-.+.+...|+.+..|+..|-.|...|.+.+|
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHH
Confidence 34489999999999999999999988887776666888999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
+.+|.++...+|....+|+.+|..+...|+.++|...|..|-+..|. ......+|.-+...+++.-|...|.+|+.++|
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999887 44445556667788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC----CC---CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC----PN---CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 523 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
++|-+...+|.+....+.+.+|..+|+.++..- +. -.+.+.++|.++.+ .+.+.+|+..|++++...|++
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk---l~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK---LNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH---HhhHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999998432 22 35679999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 596 PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 596 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
+..+..+|.++...|+++.|+..|.++|-+.|++.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 99999999999999999999999999999999984
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.6e-19 Score=174.55 Aligned_cols=425 Identities=16% Similarity=0.081 Sum_probs=322.0
Q ss_pred CCCcHHHHHHHHHccc---CHHHHHHHHHHHHHhcCCCHH-HHHH--------HHhhcCHHHHHHHHHHHHHHCCCCHHH
Q 040951 212 IPKSVRLWLQAAELDH---DKANKSRVLRMALDEIPDSVR-LWKA--------LVEISSEEEARILLHRAVECCPLDVEL 279 (701)
Q Consensus 212 ~P~~~~lw~~~~~le~---~~~~a~~~l~kal~~~P~~~~-l~~~--------~~~l~~~~~A~~~l~~a~~~~P~~~~l 279 (701)
.|++-.+-+..+.+.. ++..|++.|+-||...|.--. .... +++.+.|++|+..|...++..|+-...
T Consensus 233 f~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~ 312 (840)
T KOG2003|consen 233 FPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA 312 (840)
T ss_pred cCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh
Confidence 4555555444444443 677899999999999987443 2222 234458999999999999999986533
Q ss_pred ---HHHHHhccChHHHHHHHHHHHHhC----------CC-C-HHHHHHH------HHHHHHcCChhHHHHHHHHHHHHhh
Q 040951 280 ---WLALARLETYGVARSVLNKARKKL----------PK-E-RAIWIAA------AKLEEANGNTSMVGKIIERGIRALQ 338 (701)
Q Consensus 280 ---~~~l~~l~~~~~A~~~l~~a~~~~----------p~-~-~~~~~~~------a~~~~~~g~~~~a~~~~~~a~~~~~ 338 (701)
.+++.-+|+-++-++.|.+.+..- |. + ...++.- .+-.++. +-..|.+.+-.+.+...
T Consensus 313 ~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~-~ka~aek~i~ta~kiia 391 (840)
T KOG2003|consen 313 LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE-NKADAEKAIITAAKIIA 391 (840)
T ss_pred hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhc
Confidence 333445588888888898887642 11 1 1112211 1112222 23345555555555432
Q ss_pred cCcc--cCCHHHHHHHHHHHHHcCC--------cHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH--cCC
Q 040951 339 GEEV--VIDRDTWMKEAEIAEKAGS--------DAEECKKRGSIETARAIFSHACTVFLTKKS-IWLKAAQLEKT--HGS 405 (701)
Q Consensus 339 ~~~~--~~~~~~w~~~a~~~e~~~~--------~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~--~g~ 405 (701)
.... ......|............ .|..+.+.|+++.|++++.-.-+.+....+ +-..+..++.. -.+
T Consensus 392 pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~ 471 (840)
T KOG2003|consen 392 PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD 471 (840)
T ss_pred cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc
Confidence 2110 0011234322211111110 466789999999999998766555543332 34445444444 347
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 040951 406 RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKAR 485 (701)
Q Consensus 406 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 485 (701)
+..|..+...++..+..++.+....+.+.+..|++++|.+.|.+++..+....++.+..+..+...|+.++|+.+|-+..
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHH
Q 040951 486 DMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYS 564 (701)
Q Consensus 486 ~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 564 (701)
.+.-+ ..+++.++.+|....+..+|++++.++...-|++|.++..++.+|.+.|+-.+|.+++-.....+|-+.+..-.
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 77655 99999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcC
Q 040951 565 LANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMV 640 (701)
Q Consensus 565 la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~ 640 (701)
++..|.. ..-.++|+.+|+++-...|+...--+..+.|..+.|+|+.|..+|...-..+|.+...+.-++.+.
T Consensus 632 l~ayyid---tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 632 LAAYYID---TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHh---hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 9999998 888999999999999999988777777889999999999999999999999999876655555443
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=2.9e-19 Score=189.24 Aligned_cols=290 Identities=14% Similarity=0.061 Sum_probs=249.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCChHHHH
Q 040951 366 CKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE-VLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~g~~~~A~ 444 (701)
....|+++.|.+.+.++.+..|+....+...+.+....|+++.|...+.++.+..|++. .+...++.++...|+++.|+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 37899999999999999999999888889999999999999999999999999999885 57777899999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHH----HHHHHHHHHhCChHHHHHHHHHHHH
Q 040951 445 DILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVW----MKSAIVERELGNNAEERGFIEEGLK 519 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~----~~~a~~~~~~g~~~~A~~~~~~al~ 519 (701)
..++++.+..|+++.++..++.++...|++++|.+.+.+..+.... +..+ .....-....+..+++...+..+..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987433 2222 1111112333444556678888888
Q ss_pred hCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHH--HHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 520 RFP----SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLW--YSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 520 ~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
..| +++.++..++..+...|++++|.+.++++++..|++.... ......... .++...++..++++++..|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~---~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK---PEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC---CCChHHHHHHHHHHHHhCC
Confidence 888 5899999999999999999999999999999999987532 222222334 6788999999999999999
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHH
Q 040951 594 LNP--EIWLATIRAESKHGNKKEADSFIA--KALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKL 669 (701)
Q Consensus 594 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~ 669 (701)
+++ .+...+|+++.+.|++++|..+|+ .+++..|+ +..+..+|.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-------------------------------~~~~~~La~l 379 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-------------------------------ANDLAMAADA 379 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-------------------------------HHHHHHHHHH
Confidence 999 899999999999999999999999 57778884 6667799999
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 040951 670 FWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 670 ~~~~g~~~~A~~~~~~al~~ 689 (701)
+++.|+.++|..+|++++..
T Consensus 380 l~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.88 E-value=3.3e-22 Score=201.48 Aligned_cols=256 Identities=23% Similarity=0.218 Sum_probs=124.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 040951 365 ECKKRGSIETARAIFSHACTV--FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~ 442 (701)
.+...|++++|+.++.+.+.. .|++...|..++.+....|+++.|+..|++++..++.++..+..++.+ ...+++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 348999999999999776655 489999999999999999999999999999999999988888888888 78999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG--GT-ERVWMKSAIVERELGNNAEERGFIEEGLK 519 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 519 (701)
|..+++++++..+ ++..+..++.++...++++++..+++++.... +. +.+|..+|.++...|+.++|+.+|+++++
T Consensus 96 A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 96 ALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998765 47778888899999999999999999987644 33 88999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 520 RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
.+|+++.+...++.++...|+.++++++++...+..|.++.+|..+|.++.. .|++++|+.+|++++..+|+++.+.
T Consensus 175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~---lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ---LGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH---HT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc---ccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999988889999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
..++.++...|+.++|..++.+++..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999998764
No 47
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=5.1e-19 Score=184.21 Aligned_cols=417 Identities=15% Similarity=0.099 Sum_probs=288.9
Q ss_pred CCHHHHHHH----HhhcCHHHHHHHHHHHHHHCCCCHHHHHHHH----hccChHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 040951 245 DSVRLWKAL----VEISSEEEARILLHRAVECCPLDVELWLALA----RLETYGVARSVLNKARKKL--PKERAIWIAAA 314 (701)
Q Consensus 245 ~~~~l~~~~----~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~----~l~~~~~A~~~l~~a~~~~--p~~~~~~~~~a 314 (701)
++..+|..+ +..++++.+.+.|++++..+-...+.|..++ ..|.-..|..++++.+... |.++...+..+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 445555543 4556999999999999988888888887654 3478889999999999998 88888887777
Q ss_pred HHHH-HcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 315 KLEE-ANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEE-CKKRGSIETARAIFSHACTVFLTKKSI 392 (701)
Q Consensus 315 ~~~~-~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~-~~~~~~~~~A~~~~~~al~~~p~~~~~ 392 (701)
+++. +.|..+++..+..+++..+...........+...+-.+......+.. ..+.-...++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 6665 55888999999999998553332222233333333222100000000 012223467899999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 393 WLKAAQLEKTHGSRESLIALLRKAVTYFP-QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471 (701)
Q Consensus 393 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~ 471 (701)
.+.++-.+...++.+.|.....++++.++ .+...|..+|.++...+++..|+.+.+.++...|+|.......+.+....
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 99999999999999999999999999955 67889999999999999999999999999999999888888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCC-HHHHHHHH---------HHHHHhCChHHHHHHHHHHHHh--------C-----C------
Q 040951 472 RELERARMLLAKARDMGGT-ERVWMKSA---------IVERELGNNAEERGFIEEGLKR--------F-----P------ 522 (701)
Q Consensus 472 ~~~~~A~~~~~~a~~~~p~-~~~~~~~a---------~~~~~~g~~~~A~~~~~~al~~--------~-----p------ 522 (701)
++.++|...+...+..... ..+-..++ .+....++..+|.+.+.++... . |
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 9999999988887765432 11111111 1111122333333333322211 0 1
Q ss_pred CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 523 SF-------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 523 ~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
.. ..+|...+..+...++.++|..++.++-+.+|.++..|+..|.++.. .|...+|...|..++..+|++
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~---~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV---KGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH---HHhhHHHHHHHHHHHhcCCCC
Confidence 10 12455555555556666666666666666666666666666666666 666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhc
Q 040951 596 PEIWLATIRAESKHGNKKEADS--FIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHD 673 (701)
Q Consensus 596 ~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~ 673 (701)
+.....+|.++.+.|+..-|.. ++.. +++.+|.++++|+.+|.++...
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~d------------------------------alr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSD------------------------------ALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHH------------------------------HHhhCCCCHHHHHHHHHHHHHc
Confidence 6666666666666665444444 4444 4555555799999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCc
Q 040951 674 RKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 674 g~~~~A~~~~~~al~~~p~~~ 694 (701)
|+.+.|.+.|.-|+++++.+|
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cchHHHHHHHHHHHhhccCCC
Confidence 999999999999999998876
No 48
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.87 E-value=8.1e-19 Score=186.32 Aligned_cols=292 Identities=16% Similarity=0.104 Sum_probs=177.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 040951 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483 (701)
Q Consensus 404 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 483 (701)
.+...+...|-+++..+|....+|..+|.+|....|...|..+|.+|++.+|.+...+-..+..|.+..+++.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34555666666666666666666666666666555666666666666666666666666666666666666666665444
Q ss_pred HHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH
Q 040951 484 ARDMGGT---ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP 560 (701)
Q Consensus 484 a~~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 560 (701)
+-+..|- ...|...|-+|...++...|+..|+.++..+|.+..+|..+|++|...|.+..|.+.|.++....|.+..
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 4444443 3344455555555566666666666666666666666666666666666666666666666555665544
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHh-------------------------------------------------
Q 040951 561 LWYSLANLEEKRNGLNGLSKARAVLSVARLK------------------------------------------------- 591 (701)
Q Consensus 561 ~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~------------------------------------------------- 591 (701)
..+..+.++.. .|.+.+|...+...+..
T Consensus 632 ~~fk~A~~ecd---~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 632 GRFKEAVMECD---NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred HHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 44444444443 33333333333222221
Q ss_pred -------------------------------------------CCCC-------------------HHHHHHHHHHHHh-
Q 040951 592 -------------------------------------------NPLN-------------------PEIWLATIRAESK- 608 (701)
Q Consensus 592 -------------------------------------------~p~~-------------------~~~~~~l~~~~~~- 608 (701)
.|++ +..|.++|.-|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 0111 1245555554443
Q ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC-Cccch--hHHHHHHHhcCCChHHHHHHHHHHHhcCCHHH
Q 040951 609 -------HGNKKEADSFIAKALQKCPNSGILWAELIKMVP-HHDRK--SKGKDALVKSDRDPHVFAAVAKLFWHDRKVDK 678 (701)
Q Consensus 609 -------~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~-~~~~~--~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 678 (701)
..+...|+..+.++++.+.++..+|+.+.-+.. ...+- .-+.+++...|.+...|.++|.++....+++.
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 123346788888888888888888888765522 11121 13556777788888888888888888889999
Q ss_pred HHHHHHHHHHhCCCCccccc
Q 040951 679 ARNWFNKAVSLDPDTGDFWA 698 (701)
Q Consensus 679 A~~~~~~al~~~p~~~d~w~ 698 (701)
|...|.++..++|.|...|.
T Consensus 869 A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHH
Confidence 99999999999998888775
No 49
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-18 Score=167.33 Aligned_cols=296 Identities=13% Similarity=0.087 Sum_probs=270.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
.....+..+..++-.-....|+|..+...++.++...|++.+|+..|+++...+|......-.||.++...|+++.-..+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 55555666666777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF 525 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 525 (701)
....+........-|+--+.+.+..+++..|+.+-++++...|. ...++..|.++...|+.++|+-.|..+..+.|..-
T Consensus 289 ~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 289 MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH
Confidence 99999888677778998889999999999999999999999988 88899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHH-HHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA-NLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIR 604 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 604 (701)
+.|..+...|...|.+.+|.-.-..+++..|.+......+| .++.. ...--++|..++++++..+|....+-..++.
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~--dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP--DPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc--CchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999888886 44432 0345689999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 605 AESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFN 684 (701)
Q Consensus 605 ~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 684 (701)
++...|.++.++.++++.+...|+ ...+..+|.++...+.+.+|.+.|.
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D-------------------------------~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPD-------------------------------VNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccc-------------------------------cHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999999999995 6788899999999999999999999
Q ss_pred HHHHhCCCCcc
Q 040951 685 KAVSLDPDTGD 695 (701)
Q Consensus 685 ~al~~~p~~~d 695 (701)
.|+.++|++..
T Consensus 496 ~ALr~dP~~~~ 506 (564)
T KOG1174|consen 496 KALRQDPKSKR 506 (564)
T ss_pred HHHhcCccchH
Confidence 99999998753
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=4.5e-18 Score=180.21 Aligned_cols=294 Identities=14% Similarity=0.062 Sum_probs=189.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCH-H
Q 040951 313 AAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKK-S 391 (701)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~ 391 (701)
-|.+....|+++.|.+.+.++.+..|.. ...++..++.. ..+|+++.|..++.++.+..|++. .
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~~~~-----~~~~llaA~aa----------~~~g~~~~A~~~l~~a~~~~p~~~l~ 154 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHAAEP-----VLNLIKAAEAA----------QQRGDEARANQHLEEAAELAGNDNIL 154 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHH----------HHCCCHHHHHHHHHHHHHhCCcCchH
Confidence 4555556677777777766665543332 23333333333 666777777777777776666664 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH----HHHHH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL----AAFKL 467 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~----~la~~ 467 (701)
+...++.++...|+++.|...+++.++..|+++.++..++.++...|++++|...+.+..+..+.++.... ....-
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 55556777777777777777777777777777777777777777777777777777777766433333221 11111
Q ss_pred HHHcCcHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCC
Q 040951 468 EFENRELERARMLLAKARDMGG-----TERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLW--LMLGQLEERLGH 540 (701)
Q Consensus 468 ~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~ 540 (701)
....+..+++...+..+....| ++.++..++..+...|++++|...++++++..|++.... ..........++
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 1223333444456666666555 367777777777777777777777777777777765421 112222233467
Q ss_pred HHHHHHHHHHHhhhCCCCH--HHHHHHHHHHhhhccCCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040951 541 LKEAKEAYQSGCNQCPNCI--PLWYSLANLEEKRNGLNGLSKARAVLS--VARLKNPLNPEIWLATIRAESKHGNKKEAD 616 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~g~~~~A~~~~~--~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 616 (701)
.+.+++.++++++..|+++ .+...+|+++.+ .|++++|+++|+ .+++..|++.. +..++.++...|+.++|.
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~---~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK---HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA 390 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH---cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH
Confidence 7777888888888888887 777788888888 888888888888 46667776544 557788888888888888
Q ss_pred HHHHHHHHh
Q 040951 617 SFIAKALQK 625 (701)
Q Consensus 617 ~~~~~al~~ 625 (701)
.++++++..
T Consensus 391 ~~~~~~l~~ 399 (409)
T TIGR00540 391 AMRQDSLGL 399 (409)
T ss_pred HHHHHHHHH
Confidence 888877654
No 51
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.4e-18 Score=171.72 Aligned_cols=384 Identities=16% Similarity=0.075 Sum_probs=275.4
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHH----HHHhhcCHHHHHHHHHHHHHHCCCCHHHHHH----HHhccChHHHHHHHH
Q 040951 226 DHDKANKSRVLRMALDEIPDSVRLWK----ALVEISSEEEARILLHRAVECCPLDVELWLA----LARLETYGVARSVLN 297 (701)
Q Consensus 226 e~~~~~a~~~l~kal~~~P~~~~l~~----~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~----l~~l~~~~~A~~~l~ 297 (701)
..+++.|...|..|+.++|.+.-|+. .+..+++|++|.+--.+.++++|+-+..|.. +.-+|+|++|+..|.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 34899999999999999999887765 4667779999999999999999998887764 445799999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChh---------------------HHHHHHHHHHHHhhcCcccC----C-HHHHHH
Q 040951 298 KARKKLPKERAIWIAAAKLEEANGNTS---------------------MVGKIIERGIRALQGEEVVI----D-RDTWMK 351 (701)
Q Consensus 298 ~a~~~~p~~~~~~~~~a~~~~~~g~~~---------------------~a~~~~~~a~~~~~~~~~~~----~-~~~w~~ 351 (701)
+.++.+|++..+...++..+....... .....|...+..++.++..+ . ......
T Consensus 95 ~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 95 EGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred HHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 999999999999999998882211000 01112222222222221100 0 000000
Q ss_pred HHHHH------H-HcCC--------------------------------------cHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 352 EAEIA------E-KAGS--------------------------------------DAEECKKRGSIETARAIFSHACTVF 386 (701)
Q Consensus 352 ~a~~~------e-~~~~--------------------------------------~a~~~~~~~~~~~A~~~~~~al~~~ 386 (701)
.+... + ..|. .+.......+++.|++.|..++..+
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 00000 0 0000 3555577778888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 040951 387 LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEV-------LWLMGAKEKWLAGDVPAARDILQEAYATIPNSEE 459 (701)
Q Consensus 387 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~ 459 (701)
.+...+...+.++...|.+...+.....+++..-.... ....+|..+...++++.|+..|.+++...-+
T Consensus 255 -~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--- 330 (539)
T KOG0548|consen 255 -TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--- 330 (539)
T ss_pred -hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC---
Confidence 77788888888888888888888777777765443222 2223444555667788888888887766543
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL 538 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 538 (701)
..+.......+++....+...-..|. ..--...|.-++..|+|..|+..|.+++..+|+++.+|.+.+-+|..+
T Consensus 331 -----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 331 -----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 33444556667777777766666776 444445578888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040951 539 GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSF 618 (701)
Q Consensus 539 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 618 (701)
|.+..|+...+.+++++|+....|++-|.++.. +.+|++|...|+.+++.+|++.++...+.++............+
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~---mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRA---MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHH
Confidence 999999999999999999999999999988888 88899999999999999998888888888877654333334445
Q ss_pred HHH
Q 040951 619 IAK 621 (701)
Q Consensus 619 ~~~ 621 (701)
+++
T Consensus 483 ~~r 485 (539)
T KOG0548|consen 483 KRR 485 (539)
T ss_pred HHh
Confidence 555
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.1e-17 Score=159.97 Aligned_cols=298 Identities=15% Similarity=0.105 Sum_probs=231.1
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040951 258 SEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERG 333 (701)
Q Consensus 258 ~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a 333 (701)
.+..+..++-.-....|+++.+...++++ |++++|+-.|++++..+|.+....-.+|.+..+.|+++....+....
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 34445556666667788888888776664 88999999999999999998888888999999999998888888777
Q ss_pred HHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040951 334 IRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALL 413 (701)
Q Consensus 334 ~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 413 (701)
+...... ...|..-+... ...+++..|+.+-+++++.+|.+..+++..|.++.+.|+.++|.-.|
T Consensus 293 f~~~~~t-----a~~wfV~~~~l----------~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 293 FAKVKYT-----ASHWFVHAQLL----------YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred Hhhhhcc-----hhhhhhhhhhh----------hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 7653322 56677665544 77888899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH-HcCcHHHHHHHHHHHHhcCCC-
Q 040951 414 RKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAF-KLEF-ENRELERARMLLAKARDMGGT- 490 (701)
Q Consensus 414 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la-~~~~-~~~~~~~A~~~~~~a~~~~p~- 490 (701)
+.+....|...+.|..+..+|...|.+.+|...-..+++..|.+......+| .++. .-.--++|.+.+++++...|.
T Consensus 358 R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 358 RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 9998888888888888888888889999988888888888888877766664 3332 223346777777777777777
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
..+...++.++...|.+..++.++++.+..+|+ ..++..+|++....+.+.+|.+.|..++.++|++......+-.++.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 666677777777777777777777777777776 5677777777777777777777777777777777666655555554
Q ss_pred h
Q 040951 571 K 571 (701)
Q Consensus 571 ~ 571 (701)
.
T Consensus 517 ~ 517 (564)
T KOG1174|consen 517 S 517 (564)
T ss_pred c
Confidence 4
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.85 E-value=1.1e-17 Score=176.21 Aligned_cols=287 Identities=14% Similarity=0.100 Sum_probs=237.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHcCChHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVL-WLMGAKEKWLAGDVPAARD 445 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~g~~~~A~~ 445 (701)
...|+++.|++...+.-+..+.....+...+......|+++.|...|.++.+..|++... ....+.++...|++++|..
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 667999999987777655433333344444666699999999999999999999988543 3455899999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HH--------HHHHHHHHHHHhCChHHHHHHHHH
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ER--------VWMKSAIVERELGNNAEERGFIEE 516 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~--------~~~~~a~~~~~~g~~~~A~~~~~~ 516 (701)
.++++.+.+|+++.+...++.+|...|++++|..++.++.+..+. +. ++..+........+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999986654 22 222222222233344445555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 517 GLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 517 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
.-...|+++.++..++..+...|+.++|...++++++ .|.++.+...++.+ . .++.++++..+++.++.+|+++
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~---~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--K---TNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--c---CCChHHHHHHHHHHHhhCCCCH
Confidence 5556677999999999999999999999999999999 45566666666654 4 6899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCH
Q 040951 597 EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKV 676 (701)
Q Consensus 597 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 676 (701)
.++..+|+++.+.|++++|...|+++++..|+ ...+..++.++.+.|+.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-------------------------------~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-------------------------------AYDYAWLADALDRLHKP 377 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------------------------------HHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999995 56677899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 040951 677 DKARNWFNKAVSLD 690 (701)
Q Consensus 677 ~~A~~~~~~al~~~ 690 (701)
++|..+|++++.+.
T Consensus 378 ~~A~~~~~~~l~~~ 391 (398)
T PRK10747 378 EEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998864
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.85 E-value=5.5e-18 Score=160.09 Aligned_cols=297 Identities=11% Similarity=0.052 Sum_probs=202.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 040951 366 CKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARD 445 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 445 (701)
+...|++..|+..|..+++.+|++..+++..+..|...|+...|+.-+.++++..|+...+....|.++.++|.+++|..
T Consensus 48 lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH
Confidence 37788888888888888888888888888888888888888888888888888888888888888888888888999988
Q ss_pred HHHHHHHhCCCCHHHH---------------HHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHH
Q 040951 446 ILQEAYATIPNSEEIW---------------LAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAE 509 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~---------------~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~ 509 (701)
-|...+..+|++.... ......+...|+...|+.....++++.|- ..++...+.++...|++..
T Consensus 128 DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 128 DFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHH
Confidence 8888888888643211 11223334455666666666666666655 5555555666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH------------HHhhhccCCC
Q 040951 510 ERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN------------LEEKRNGLNG 577 (701)
Q Consensus 510 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~~~~g~ 577 (701)
|+.-+..+-++..++...++..++++...|+.+.++...+.+++.+|++-..+-.+-. -... .++
T Consensus 208 AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie---~~~ 284 (504)
T KOG0624|consen 208 AIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE---EKH 284 (504)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh---hhh
Confidence 6666666666666666666666666666666666666666666666665322211111 1112 445
Q ss_pred HHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHH
Q 040951 578 LSKARAVLSVARLKNPLNPE----IWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDAL 653 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al 653 (701)
+.++++..++.++.+|..+. .+..+..|+...|++.+|+....++|+..|
T Consensus 285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-------------------------- 338 (504)
T KOG0624|consen 285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-------------------------- 338 (504)
T ss_pred HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc--------------------------
Confidence 55555555555555554332 233334445555555555555555555555
Q ss_pred HhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 654 VKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 654 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
+|.+++...+..|.-...|+.|+.-|++|.+.+|++..
T Consensus 339 ----~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 339 ----DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred ----hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 46889999999999999999999999999999998754
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.84 E-value=4.1e-17 Score=173.60 Aligned_cols=422 Identities=14% Similarity=0.089 Sum_probs=267.6
Q ss_pred HHHHHHhhc-CHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 040951 249 LWKALVEIS-SEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNT 323 (701)
Q Consensus 249 l~~~~~~l~-~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~ 323 (701)
.|.+++..- +...|...|-+++.++|.-...|..++.. .+...|.+.|.+|++.+|++.+.|-..+..+....++
T Consensus 463 ~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 463 FWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 444444433 77888888888888888877777766554 3667789999999999999999999999999988889
Q ss_pred hHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 324 SMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTH 403 (701)
Q Consensus 324 ~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 403 (701)
++|..+.-++-+..|. ......|...+-. |...+++..|+.-|+.++..+|.+...|..++..|...
T Consensus 543 e~a~~I~l~~~qka~a---~~~k~nW~~rG~y----------yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPA---FACKENWVQRGPY----------YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES 609 (1238)
T ss_pred HHHHHHHHHHhhhchH---HHHHhhhhhcccc----------ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 8888885554443222 2234567765533 37888889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCcHHH
Q 040951 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS-------EEIWLAAFKLEFENRELER 476 (701)
Q Consensus 404 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~-------~~~~~~la~~~~~~~~~~~ 476 (701)
|.+..|.++|.++...+|.+....+..+-+....|.+.+|+..+...+...... .+.++..+..+...|-..+
T Consensus 610 Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999888888888888888999999988888877665332 2344445555555555556
Q ss_pred HHHHHHHHHhcCC---------CHHHHHHHHHHHHHh-----------------------CCh---H---HHHHHHHHHH
Q 040951 477 ARMLLAKARDMGG---------TERVWMKSAIVEREL-----------------------GNN---A---EERGFIEEGL 518 (701)
Q Consensus 477 A~~~~~~a~~~~p---------~~~~~~~~a~~~~~~-----------------------g~~---~---~A~~~~~~al 518 (701)
|...+++.++.+- +.-.|..++..+... +.. + -+..++-..+
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 6666665554211 122233322221100 000 0 0111222222
Q ss_pred HhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 519 KRFPSFFNLWLMLGQLEER--------LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 519 ~~~p~~~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
+.... +..|+.+|.-|.+ +.+...|+.+++++++.+.++...|..+|.+ .. .|++.-|...|-+.+.
T Consensus 770 sl~~~-~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg---~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 770 SLAIH-MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG---IGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc---cchhhhhhhhhhhhhh
Confidence 21111 3345555544433 1222345555555555555555555555555 33 4555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHh--------------------------------
Q 040951 591 KNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIK-------------------------------- 638 (701)
Q Consensus 591 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~-------------------------------- 638 (701)
.+|.+...|.++|.++....+++.|...+.++..+.|.+...|...+.
T Consensus 845 sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 845 SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 555555555555555555555555555555555555555443332111
Q ss_pred -------cCCCccchh--------------HHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 639 -------MVPHHDRKS--------------KGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 639 -------~~~~~~~~~--------------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 688 (701)
.....+..+ .+.+.+...|++..++...|....+.+.+..|.+...|.+.
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 12345667788888999999999999999999988888764
No 56
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-17 Score=173.37 Aligned_cols=410 Identities=18% Similarity=0.152 Sum_probs=281.7
Q ss_pred cCcchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHHHHHHhc--CCCHHHHHHHH-----hhcCHHHHHHH
Q 040951 196 ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLRMALDEI--PDSVRLWKALV-----EISSEEEARIL 265 (701)
Q Consensus 196 ~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~kal~~~--P~~~~l~~~~~-----~l~~~~~A~~~ 265 (701)
+..+.+...|++++...-.....|-..+.-.. ....|..++++.+... |+++....... +++.+++++.+
T Consensus 337 g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldY 416 (799)
T KOG4162|consen 337 GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDY 416 (799)
T ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHH
Confidence 34456666777777666666667765543222 4456777888887777 65555333322 22367777777
Q ss_pred HHHHHHHCCCCHH-----HH----HHHHhc-----------cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhH
Q 040951 266 LHRAVECCPLDVE-----LW----LALARL-----------ETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSM 325 (701)
Q Consensus 266 l~~a~~~~P~~~~-----l~----~~l~~l-----------~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~ 325 (701)
..+++..+-...+ .+ ++|... ....++.+.++++++.+|+|+.+.+.++.-+..+++.+.
T Consensus 417 A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~s 496 (799)
T KOG4162|consen 417 AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTS 496 (799)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHH
Confidence 7777763321111 11 111111 124567888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 326 VGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS 405 (701)
Q Consensus 326 a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 405 (701)
|....+++++..+.+. ...|..++... ..++++..|+.+...++...|+|.......+.+....|+
T Consensus 497 Al~~~~eaL~l~~~~~----~~~whLLALvl----------Sa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 497 ALDYAREALALNRGDS----AKAWHLLALVL----------SAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHHhcCCcc----HHHHHHHHHHH----------hhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhccc
Confidence 8888888888655543 66787777655 778888888888888888888888777777777788888
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc---CcHHHHHHHH
Q 040951 406 RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN-SEEIWLAAFKLEFEN---RELERARMLL 481 (701)
Q Consensus 406 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~-~~~~~~~la~~~~~~---~~~~~A~~~~ 481 (701)
.+++...+...+..-...+.+-..+++ |...+-..-+.-+.. .|. .......+....... -.++.. +
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~-----g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~se~~---L 633 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDE-----GKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGSELK---L 633 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhh-----hhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhcccccc---c
Confidence 888888887776653322222222221 111111011111111 111 111111111111111 111111 1
Q ss_pred HHHHh-cCCC------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 040951 482 AKARD-MGGT------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ 554 (701)
Q Consensus 482 ~~a~~-~~p~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 554 (701)
.+... ..|+ ..+|...+..+...++.++|..++.++-+.+|.++..|+..|.++...|...+|.+.|..++..
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 11110 1111 4578888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhccCCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 040951 555 CPNCIPLWYSLANLEEKRNGLNGLSKARA--VLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 555 ~p~~~~~~~~la~~~~~~~~~g~~~~A~~--~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 631 (701)
+|+++.....+|.++.+ .|+..-|.. ++..+++.+|.++++|+.+|.+....|+.++|...|..++++.+.+|.
T Consensus 714 dP~hv~s~~Ala~~lle---~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLE---LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCCcHHHHHHHHHHHH---hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999 887766666 999999999999999999999999999999999999999999988764
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=2.7e-17 Score=173.25 Aligned_cols=292 Identities=16% Similarity=0.138 Sum_probs=219.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-
Q 040951 313 AAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS- 391 (701)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~- 391 (701)
-|.+....|+++.|.+.+.++.+..+. ....++..+..+ ...|+++.|...|.++.+..|++..
T Consensus 90 ~gl~a~~eGd~~~A~k~l~~~~~~~~~-----p~l~~llaA~aA----------~~~g~~~~A~~~l~~A~~~~~~~~~~ 154 (398)
T PRK10747 90 QALLKLAEGDYQQVEKLMTRNADHAEQ-----PVVNYLLAAEAA----------QQRGDEARANQHLERAAELADNDQLP 154 (398)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-----hHHHHHHHHHHH----------HHCCCHHHHHHHHHHHHhcCCcchHH
Confidence 444455578888888777665443211 122344434433 7888999999999999888888753
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH--------HH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIW--------LA 463 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~--------~~ 463 (701)
.....+.++...|+++.|...+++..+..|+++.+...++.++...|++++|+.++.+..+..+.++... ..
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3345588888899999999999999999999998888889999889999999988888888776544422 22
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951 464 AFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLK 542 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 542 (701)
+........+.+...++++..-...|+ +.++..++..+...|+.++|...++++++. |.++.+...++.+ ..++++
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~ 311 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPE 311 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChH
Confidence 222222223334444444444344454 888888999999999999999999999984 4456666666665 448899
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 543 EAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 543 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
++++.+++.++.+|+++.+++.+|+++.. .+++.+|++.|+++++..|++ ..+..++.++...|+.++|..+|+++
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~---~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMK---HGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999998876 44667899999999999999999999
Q ss_pred HHhC
Q 040951 623 LQKC 626 (701)
Q Consensus 623 l~~~ 626 (701)
+...
T Consensus 388 l~~~ 391 (398)
T PRK10747 388 LMLT 391 (398)
T ss_pred Hhhh
Confidence 8765
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=9.6e-17 Score=156.80 Aligned_cols=433 Identities=13% Similarity=0.069 Sum_probs=325.0
Q ss_pred HhhhcHHHHHHHHHHHh--hhCCCCHHHHH--HHHhhcC--cchHHHHHHHHHHhCCCcHH-HHHHHHHc-------ccC
Q 040951 163 ELAKEEAAARKLITKGC--NMCPKNEDVWL--EACRLAR--PDEAKGVVAKGVRQIPKSVR-LWLQAAEL-------DHD 228 (701)
Q Consensus 163 ~~~g~~~~A~~~~~~~~--~~~P~~~~~wl--~~~~l~~--~~~A~~~l~~al~~~P~~~~-lw~~~~~l-------e~~ 228 (701)
+...-..+|...++-.+ +..|.+.-+-+ ..+.+.+ ...|...|+-||..-|.-.+ .-++...- ...
T Consensus 212 ~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 212 EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEeccc
Confidence 33344556666665555 23454433322 2222222 23788889999988886432 22222221 117
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHH---HHhhcCHHHHHHHHHHHHHH--------------CCCCHHHHHHHH------h
Q 040951 229 KANKSRVLRMALDEIPDSVRLWKA---LVEISSEEEARILLHRAVEC--------------CPLDVELWLALA------R 285 (701)
Q Consensus 229 ~~~a~~~l~kal~~~P~~~~l~~~---~~~l~~~~~A~~~l~~a~~~--------------~P~~~~l~~~l~------~ 285 (701)
++.|+..|+...+..|+-...+.. +...++-+.-++.|.+.+.. +|++ .+...-+ +
T Consensus 292 y~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~-~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 292 YDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD-NLLNEAIKNDHLKN 370 (840)
T ss_pred chhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch-HHHHHHHhhHHHHH
Confidence 889999999999999987764433 33445888888888888753 1222 1222211 1
Q ss_pred c--cChHHHHHHHHHHHHhC-----CC--------------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhh
Q 040951 286 L--ETYGVARSVLNKARKKL-----PK--------------------ERAIWIAAAKLEEANGNTSMVGKIIERGIRALQ 338 (701)
Q Consensus 286 l--~~~~~A~~~l~~a~~~~-----p~--------------------~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~ 338 (701)
+ ++-..|.+..-.+.+.. |+ -.++-+..+--+.++|+++.|+++++-.-+...
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 1 23333444444343332 11 122334445557788888888887766544222
Q ss_pred cCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040951 339 GEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVT 418 (701)
Q Consensus 339 ~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 418 (701)
... ...-..+... .......++..|.++-..++..+..++.+...-+.+....|++++|.+.|+.++.
T Consensus 451 k~~----saaa~nl~~l--------~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 451 KTA----SAAANNLCAL--------RFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred hhh----HHHhhhhHHH--------HHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 111 0000111100 0113345789999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHH
Q 040951 419 YFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKS 497 (701)
Q Consensus 419 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 497 (701)
.+.....+.+..+..+...|+.++|+.+|-+.-..--++.++...++.+|....+..+|++++.++....|+ +.++..+
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 998999999999999999999999999999988888889999999999999999999999999999999998 9999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCC
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~ 577 (701)
+.+|-+.|+-.+|.+++-.....+|.+....-.++..|....-+++|+.+|+++.-..|+.....+..+.++.+ .|+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr---sgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR---SGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh---ccc
Confidence 99999999999999999999999999999999999999999999999999999999999988877888899999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 040951 578 LSKARAVLSVARLKNPLNPEIWLATIRAESKHGN 611 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 611 (701)
+.+|...|...-.+.|.+.+.+..+.++.-..|-
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999998877774
No 59
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-17 Score=166.21 Aligned_cols=376 Identities=15% Similarity=0.076 Sum_probs=211.8
Q ss_pred HHhhcCHHHHHHHHHHHHHHCCCCHHHHH----HHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040951 253 LVEISSEEEARILLHRAVECCPLDVELWL----ALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGK 328 (701)
Q Consensus 253 ~~~l~~~~~A~~~l~~a~~~~P~~~~l~~----~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~ 328 (701)
....++++.|+.+|..++.+.|.+.-++. +++.+++|++|.+--.+.++..|+.+..|...|....-.|++++|+.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 34455999999999999999999876653 58889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HH
Q 040951 329 IIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS-RE 407 (701)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~ 407 (701)
.|..+++..|++. .....+++.. . ..+.. .+ --..+.+|..++..-...+. .+
T Consensus 92 ay~~GL~~d~~n~-----~L~~gl~~a~----------~---------~~~~~-~~-~~~~p~~~~~l~~~p~t~~~~~~ 145 (539)
T KOG0548|consen 92 AYSEGLEKDPSNK-----QLKTGLAQAY----------L---------EDYAA-DQ-LFTKPYFHEKLANLPLTNYSLSD 145 (539)
T ss_pred HHHHHhhcCCchH-----HHHHhHHHhh----------h---------HHHHh-hh-hccCcHHHHHhhcChhhhhhhcc
Confidence 9999999888773 2233333211 0 00000 00 01122222222211111110 01
Q ss_pred HHHHHHHHHHHhCCCcHH--------------------------------------------------------------
Q 040951 408 SLIALLRKAVTYFPQAEV-------------------------------------------------------------- 425 (701)
Q Consensus 408 ~A~~~~~~al~~~p~~~~-------------------------------------------------------------- 425 (701)
.+.......+..+|.+..
T Consensus 146 ~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 146 PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhh
Confidence 111111112222221111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--------HHHHHHH
Q 040951 426 LWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT--------ERVWMKS 497 (701)
Q Consensus 426 ~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~ 497 (701)
-...+|.......+++.|++.|..++..+ .+...+...+-+|...|.+...+.....+++.... ......+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 12234444444555555555555555555 44444555555555555555555555555544332 1112222
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCC
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~ 577 (701)
|..+...++++.|+.+|.+++...-. .++..+....+++....+...-..|.-..--..-|.-+.. .|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk---~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK---KGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh---ccC
Confidence 33444445555555555555444333 2223333333444444444333444433333333444444 555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcC
Q 040951 578 LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSD 657 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p 657 (701)
+..|+..|.+++..+|+++.+|.+.+-+|...|++..|+.-.+++++++|+
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~----------------------------- 424 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN----------------------------- 424 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-----------------------------
Confidence 555555555555555555555555555555555555555555555555554
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 040951 658 RDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 658 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
....++.-|.++..+.+|++|.+.|+.+++.+|++.++
T Consensus 425 -~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 425 -FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 56666666777777777777777777777777776554
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=4.7e-18 Score=186.85 Aligned_cols=250 Identities=10% Similarity=-0.095 Sum_probs=212.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 040951 370 GSIETARAIFSHACTVFLTKKSIWLKAAQLEKTH---------GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDV 440 (701)
Q Consensus 370 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~ 440 (701)
+++++|+..|+++++.+|++..+|..++.++... +++++|...++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4568999999999999999999999999877633 3488999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 040951 441 PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLK 519 (701)
Q Consensus 441 ~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 519 (701)
++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|. +..++..+.++...|++++|+..+++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 55555566667778999999999999998
Q ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 520 RF-PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 520 ~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
.. |+++..+..+|.++...|++++|+..+.++....|.+...+..++..+.. .| ++|...++..++..-..+.-
T Consensus 435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ---NS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc---cH--HHHHHHHHHHHHHhhHhhcC
Confidence 85 77888999999999999999999999999988999988899999988888 77 47777777766544222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
......++.-.|+.+.+... .++.+.
T Consensus 510 ~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 510 PGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred chHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22266677777887776665 555444
No 61
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=99.82 E-value=3.8e-21 Score=159.71 Aligned_cols=47 Identities=55% Similarity=0.990 Sum_probs=45.5
Q ss_pred chHHHHHHHHhcCCChhhhhhhhhhhccCCCHHHhccCcccccchhh
Q 040951 2 RLEEEIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEIGDYSRS 48 (701)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~f~~~k~~l~~~~~~~w~~~p~~~~~~~~ 48 (701)
++++++++||++||||++||+||||+|++||++||+|||||||||+|
T Consensus 87 ~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~eeW~~IPE~GD~t~k 133 (133)
T PF06424_consen 87 REKEEIEKYRKENPKIQQQFADLKRSLATVSEEEWENIPEAGDYTRK 133 (133)
T ss_pred hhhhHHHhhhccCchHHHHHHHHHHHHccCCHHHHhcCCcccccccC
Confidence 67899999999999999999999999999999999999999999986
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=2.4e-17 Score=181.23 Aligned_cols=250 Identities=13% Similarity=-0.029 Sum_probs=206.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcH
Q 040951 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLA---------GDVPAARDILQEAYATIPNSEEIWLAAFKLEFENREL 474 (701)
Q Consensus 404 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~ 474 (701)
+++++|+..|++++..+|++..+|..+|.++... +++++|...++++++.+|++..++..++.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3457899999999999999999999888876532 3478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 475 ERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 475 ~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
++|...|+++++..|+ +.+++.+|.++...|++++|+..+++++..+|.++..++.++.++...|++++|+..+++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999998 888999999999999999999999999999999887777777777788999999999999887
Q ss_pred hC-CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 554 QC-PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGIL 632 (701)
Q Consensus 554 ~~-p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l 632 (701)
.. |+++..+..++.++.. .|++++|+..+.++....|.+...+..++..+...|+ .|...+++.++..-.
T Consensus 435 ~~~p~~~~~~~~la~~l~~---~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~---- 505 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSL---KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR---- 505 (553)
T ss_pred hccccCHHHHHHHHHHHHh---CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH----
Confidence 75 7788888999999999 9999999999999888888888888888888888774 777777776554321
Q ss_pred HHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 633 WAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
.+.++.. +..++.-.|+.+.|..| +++.+.
T Consensus 506 -----------------------~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 -----------------------IDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -----------------------hhcCchH---HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1112222 56667777888888877 665543
No 63
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.81 E-value=4.6e-17 Score=153.96 Aligned_cols=300 Identities=16% Similarity=0.011 Sum_probs=175.4
Q ss_pred HHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHH
Q 040951 279 LWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEK 358 (701)
Q Consensus 279 l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~ 358 (701)
+-..+.--+++.+|...|..|++.+|++..+.+..|..|...|...-|..-+.+.++.-|+- ...-+..+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-----~~ARiQRg----- 113 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-----MAARIQRG----- 113 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-----HHHHHHhc-----
Confidence 33334444778888888888888888888888888888888888877777777777754443 12223333
Q ss_pred cCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHH------------HHHHcCCHHHHHHHHHHHHHhCCCc
Q 040951 359 AGSDAEECKKRGSIETARAIFSHACTVFLTKKS---IWLKAAQ------------LEKTHGSRESLIALLRKAVTYFPQA 423 (701)
Q Consensus 359 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~------------~~~~~g~~~~A~~~~~~al~~~p~~ 423 (701)
.+..++|.+++|..-|..++..+|++.. +...++. .+...|+...|+......++.+|.+
T Consensus 114 -----~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 114 -----VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred -----hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence 3347788888888888888888775432 2222221 1123456666666666666666666
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCH-H---HHHHH--
Q 040951 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTE-R---VWMKS-- 497 (701)
Q Consensus 424 ~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~-~---~~~~~-- 497 (701)
..++.+.+.+|...|++..|+.-+..+-+...++.+..+.++.++...|+.+.++.....+++.+|+. . .|-.+
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666661 1 11111
Q ss_pred -------HHHHHHhCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951 498 -------AIVERELGNNAEERGFIEEGLKRFPSFFN----LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA 566 (701)
Q Consensus 498 -------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 566 (701)
+.-..+.+++.+++...++.++..|..+. .+..+..++..-+++.+|+....+++...|+++.++...+
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 11112334455555555555555554222 2223334444445555555555555555555555555555
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 567 NLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 567 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
..|.- ...|+.|+..|++|.+.++++.
T Consensus 349 eA~l~---dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 349 EAYLG---DEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHhh---hHHHHHHHHHHHHHHhcCcccH
Confidence 55554 4555555555555555555443
No 64
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.79 E-value=4.8e-15 Score=148.65 Aligned_cols=414 Identities=14% Similarity=0.177 Sum_probs=285.0
Q ss_pred HHHHHhCCCcHHHHHHHHHccc--CHHHHHHHHHHHHHhcCCCHHHHHHHHhhc----CHHHHHHHHHHHHHHCCCCHHH
Q 040951 206 AKGVRQIPKSVRLWLQAAELDH--DKANKSRVLRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVEL 279 (701)
Q Consensus 206 ~~al~~~P~~~~lw~~~~~le~--~~~~a~~~l~kal~~~P~~~~l~~~~~~l~----~~~~A~~~l~~a~~~~P~~~~l 279 (701)
++-|+.||.++..|..+++-.. ..++.+..+++.+...|.++..|+.+++.+ +++...++|.+++...= +.++
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhH
Confidence 4556666666666666665433 455666667777777777777777766555 66666677766664432 2566
Q ss_pred HHHHHhc-----cChHH----HHHHHHHHHH---hCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHHhh
Q 040951 280 WLALARL-----ETYGV----ARSVLNKARK---KLPKERAIWIAAAKLEEA---------NGNTSMVGKIIERGIRALQ 338 (701)
Q Consensus 280 ~~~l~~l-----~~~~~----A~~~l~~a~~---~~p~~~~~~~~~a~~~~~---------~g~~~~a~~~~~~a~~~~~ 338 (701)
|..|+.. +.... -.+.|+-++. .++.+..+|..++.+... +.+.+.++.+|++++.. |
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t-P 167 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT-P 167 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC-c
Confidence 6665543 22111 2222333332 235556666666655432 22455677777777763 2
Q ss_pred cCcccCCHHHHHHHHHHHHHcCC-cHHH--HHhcCCHHHHHHHHHHHHHh-------CCC-----------CHHHHHHHH
Q 040951 339 GEEVVIDRDTWMKEAEIAEKAGS-DAEE--CKKRGSIETARAIFSHACTV-------FLT-----------KKSIWLKAA 397 (701)
Q Consensus 339 ~~~~~~~~~~w~~~a~~~e~~~~-~a~~--~~~~~~~~~A~~~~~~al~~-------~p~-----------~~~~~~~la 397 (701)
-++ -...|..+..+....+. .|+- -.....|..|+++++..... .|. ..+.|..++
T Consensus 168 m~n---lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 168 MHN---LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred ccc---HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence 111 13455555443322111 1111 14455677888888876543 121 134799999
Q ss_pred HHHHHcCCH--------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCC
Q 040951 398 QLEKTHGSR--------ESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGD--------------VPAARDILQEAYATIP 455 (701)
Q Consensus 398 ~~~~~~g~~--------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~--------------~~~A~~~l~~a~~~~p 455 (701)
..+...+-. ....-.+++++...+.++++|+.++..+...++ .+++..+|++++...-
T Consensus 245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 888765432 234456788888899999999999998887777 7889999999987653
Q ss_pred C-CHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHH
Q 040951 456 N-SEEIWLAAFKLEFENRE---LERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWL 529 (701)
Q Consensus 456 ~-~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 529 (701)
. +..++..++......-+ .+.....+++++..... .-+|..+..+-.+..-...|+.+|.++-+..-....++.
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 3 44556666666554444 77888888888876543 567778888888888899999999999876655456666
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHH
Q 040951 530 MLGQL-EERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK--NP-LNPEIWLATIRA 605 (701)
Q Consensus 530 ~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~--~p-~~~~~~~~l~~~ 605 (701)
.-|.+ |...++..-|..+|+-+++.+++++..-..+..++.. .++-..|+.+|++++.. .| +..++|..+...
T Consensus 405 a~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~---lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 405 AAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH---LNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH---hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 66666 5678999999999999999999999999999999999 99999999999999987 33 345899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCC
Q 040951 606 ESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~p 627 (701)
+..-|+...+.++-.+-....|
T Consensus 482 ES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcc
Confidence 9999999999999888888777
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=8.4e-17 Score=145.07 Aligned_cols=201 Identities=20% Similarity=0.149 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 040951 426 LWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVEREL 504 (701)
Q Consensus 426 ~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~ 504 (701)
+.+.+|.-|...|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++...|. .+++..+|.+++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 34444444555555555555555555555555555555555555555555555555555555554 55555555555555
Q ss_pred CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 505 GNNAEERGFIEEGLKR--FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 505 g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
|.+++|...|++++.. .|.-+..+.++|.|..+.|+++.|...|++++..+|+.+.....++..+.. .|++..|+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~---~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK---AGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh---cccchHHH
Confidence 5555555555555442 233445555566665566666666666666666666666666666666655 56666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 583 AVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
.++++.....+-+.+.+...+++..+.|+-..+..+=.+.-..+|.+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 66666555555555555555556666666555555555555555554
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=7.1e-17 Score=162.84 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|...|+++++.+|++..+|..+|.++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HhcCCCccchhHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL-IKMVPHHDRKSKG 649 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~-~~~~~~~~~~~~~ 649 (701)
. .|++++|+..|++++..+|+++... .+..+....+++++|...+.+++...+.+...|... ..+..... ...+
T Consensus 144 ~---~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~ 218 (296)
T PRK11189 144 Y---GGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISE-ETLM 218 (296)
T ss_pred H---CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCH-HHHH
Confidence 5 5555555555555555555554211 111122334455555555544443322211111111 11111110 0111
Q ss_pred H-------HHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 650 K-------DALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 650 ~-------~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
. ...+..|+.+++++.+|.++...|++++|+.+|++|++.+|.
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 1 223455677899999999999999999999999999999973
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=1.5e-16 Score=143.52 Aligned_cols=205 Identities=15% Similarity=0.085 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE 470 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~ 470 (701)
.+.+.++.-|++.|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++...|++.++...+|.+++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHhcC--CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040951 471 NRELERARMLLAKARDMG--GT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEA 547 (701)
Q Consensus 471 ~~~~~~A~~~~~~a~~~~--p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 547 (701)
.|++++|...|++++... |. +..|..+|.+..+.|+++.|...|++++..+|+++.....+++.+...|++..|+..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999999743 44 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 548 YQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 548 ~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
+++.....+.........+++... .|+.+.+-++=.+.....|.+.+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~---~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKR---LGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCcHHH
Confidence 999988888888888888899999 999999999888888899988754
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.1e-15 Score=142.17 Aligned_cols=295 Identities=14% Similarity=0.083 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCc
Q 040951 262 ARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEE 341 (701)
Q Consensus 262 A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~ 341 (701)
|.+.-.+-....|.+.-.-+.+.-.++.++|...|-.+++.+|...++.+.+|.++.+.|..+.|+.+-+..+++ |+-.
T Consensus 24 aqq~~~~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT 102 (389)
T COG2956 24 AQQDKQDQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLT 102 (389)
T ss_pred HHhhHHHHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCc
Confidence 344444444445554433344444588999999999999999999999999999999999999999998887763 3222
Q ss_pred ccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040951 342 VVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP 421 (701)
Q Consensus 342 ~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 421 (701)
..-....... .|..|...|-++.|..+|....+...--..+...+..+|....++++|++.-++..+..|
T Consensus 103 ~~qr~lAl~q----------L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 103 FEQRLLALQQ----------LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred hHHHHHHHHH----------HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 1111112222 346679999999999999999876666678999999999999999999999999999887
Q ss_pred Cc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--HHHH
Q 040951 422 QA-----EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT--ERVW 494 (701)
Q Consensus 422 ~~-----~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~ 494 (701)
.. ...+..++..+....+++.|+..+.++++.+|++..+-+.+|.++...|+++.|++.++.+++.+|. +.+.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 64 3457788888888999999999999999999999999999999999999999999999999999998 8899
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 040951 495 MKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLE 569 (701)
Q Consensus 495 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 569 (701)
-.+..+|...|+..+.+..+.++.+.+++ +.+...++++.....-.+.|..++.+-+...|.-- ....+....
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~ 325 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhh
Confidence 99999999999999999999999999988 66777788887778888888888888888888653 333343333
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=2.8e-16 Score=158.50 Aligned_cols=237 Identities=14% Similarity=0.055 Sum_probs=181.8
Q ss_pred hcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951 368 KRGSIETARAIFSHACTVFL----TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 368 ~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A 443 (701)
..+..+.++..+.+++...| .....|+.+|.++...|+++.|...|+++++.+|+++.+|..+|.++...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 34566788888888986544 23567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPS 523 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 523 (701)
+..|+++++.+|++..+|..+|.++...|++++|+..|++++...|+.........+....+++++|+..|.+++...+.
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999988322222223344567899999999877755433
Q ss_pred CHHHHHHHHHHHHHcCCHHHH--HHHHHHH----hhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC-CCH
Q 040951 524 FFNLWLMLGQLEERLGHLKEA--KEAYQSG----CNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP-LNP 596 (701)
Q Consensus 524 ~~~~~~~la~~~~~~~~~~~A--~~~~~~a----l~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 596 (701)
. .|. .+..+...|+...+ ...+... .+..|..+.+|+.+|.++.. .|++++|+..|++++..+| +..
T Consensus 198 ~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~---~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 198 E--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS---LGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred c--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCchHH
Confidence 2 222 34444455655443 3222222 24456667889999999999 9999999999999999986 556
Q ss_pred HHHHHHHHHHHhcC
Q 040951 597 EIWLATIRAESKHG 610 (701)
Q Consensus 597 ~~~~~l~~~~~~~g 610 (701)
+..+.+..+....+
T Consensus 272 e~~~~~~e~~~~~~ 285 (296)
T PRK11189 272 EHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555433
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=166.55 Aligned_cols=244 Identities=18% Similarity=0.147 Sum_probs=194.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
.+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..+...+|-.|...|.-..|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHH---------HHHcCcHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHH
Q 040951 445 DILQEAYATIPNSEEIWLAAFKL---------EFENRELERARMLLAKARDMGGT---ERVWMKSAIVERELGNNAEERG 512 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~~la~~---------~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~a~~~~~~g~~~~A~~ 512 (701)
..|.+.+...|.... +..+.. ......+....++|-.+....|+ +++...+|.+|...|+|++|+.
T Consensus 374 ~~L~~Wi~~~p~y~~--l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVH--LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchh--ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999999988875322 111100 01112234455566666655553 8888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC
Q 040951 513 FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 513 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
+|+.||...|++..+|..||-.+....+.++|+..|.+++++.|..+.+++.+|..+.. .|.|.+|...|-.|+.+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN---lG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN---LGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh---hhhHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888 888888888888888776
Q ss_pred CCC----------HHHHHHHHHHHHhcCCHH
Q 040951 593 PLN----------PEIWLATIRAESKHGNKK 613 (701)
Q Consensus 593 p~~----------~~~~~~l~~~~~~~g~~~ 613 (701)
+++ ..+|..+=.+....++.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 541 235655555555555544
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=3.3e-16 Score=153.41 Aligned_cols=199 Identities=16% Similarity=0.092 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEF 469 (701)
Q Consensus 390 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~ 469 (701)
...+..++..+...|++++|...+++++..+|.+..++..++.++...|++++|+..+++++...|.+..++..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCcHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040951 470 ENRELERARMLLAKARDMGG--T-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKE 546 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~p--~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 546 (701)
..|++++|...|++++...+ . ...+..++.++...|++++|...+.+++..+|+++..+..++.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777665432 2 44555556666666666666666666666666655566666666666666666666
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 547 AYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 547 ~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
.+++++...|.++..+..++.++.. .|+.++|+.+.+.+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARA---LGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhh
Confidence 6666655555555555555555555 56666665555554443
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=149.97 Aligned_cols=258 Identities=16% Similarity=0.089 Sum_probs=220.6
Q ss_pred HcCChHHHHHHHHHHHHhC---CC-----CHHHH--HHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 040951 436 LAGDVPAARDILQEAYATI---PN-----SEEIW--LAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELG 505 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~---p~-----~~~~~--~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g 505 (701)
..+|+..|.......++.. |. ..+.| ..++++|...|-+.+|.+.|+..++..|.++.+..++.+|.+..
T Consensus 191 henDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~rid 270 (478)
T KOG1129|consen 191 HENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRID 270 (478)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhc
Confidence 4566666665554444332 22 12222 26999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHH
Q 040951 506 NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVL 585 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~ 585 (701)
++..|+.+|.+.+..+|.+.......+.++..+++.++|.++|+.+++.+|.++++.-..+.-|.. .++++-|..+|
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY---~~~PE~AlryY 347 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY---DNNPEMALRYY 347 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc---CCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988888888888 89999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHhcCCCccchhH----HHHHHHhcCC
Q 040951 586 SVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS---GILWAELIKMVPHHDRKSK----GKDALVKSDR 658 (701)
Q Consensus 586 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~l~~~~~~~~~~~~~~~~----~~~al~~~p~ 658 (701)
.+.++..-.+|+++.++|.|+.-.++++-+...|++++....+. ..+|.+.....-..++... +.-+|..+|+
T Consensus 348 RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 348 RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999875533 3789998877666665554 4446667789
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 040951 659 DPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 659 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
+.+.+.++|.+-.+.|+++.|+.++..|-...|+-.+.
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 99999999999999999999999999999999986553
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.77 E-value=7.7e-15 Score=150.49 Aligned_cols=413 Identities=13% Similarity=0.093 Sum_probs=212.1
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHH----HHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040951 258 SEEEARILLHRAVECCPLDVELWL----ALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERG 333 (701)
Q Consensus 258 ~~~~A~~~l~~a~~~~P~~~~l~~----~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a 333 (701)
+|....+..+..++..|.+.+... .+-.+|+-++|......++..++.+.-.|-.+|-++....+|++|++.|..|
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 555555555555555555544332 1333455555555555555555555555555555555555555555555555
Q ss_pred HHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040951 334 IRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALL 413 (701)
Q Consensus 334 ~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 413 (701)
+...+++ ...|..++... .+.++++-....-.+.++..|.....|+.++..+.-.|++..|..++
T Consensus 102 l~~~~dN-----~qilrDlslLQ----------~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 102 LKIEKDN-----LQILRDLSLLQ----------IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred HhcCCCc-----HHHHHHHHHHH----------HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 34444444333 45555555555555555555555555555555555555555555555
Q ss_pred HHHHHhC---CCcH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 040951 414 RKAVTYF---PQAE-----VLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKAR 485 (701)
Q Consensus 414 ~~al~~~---p~~~-----~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 485 (701)
+...+.+ |... .+.+....+....|.++.|.+.+..--...-+........+.++...+++++|..++...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 5544433 2211 1222233333444555555444443322222222333345555555555555555555555
Q ss_pred hcCCC-HHHHHHHHHHHHHhCChHHHH-HHHHHHHHhCCCCHH-------------HHHHHHHHH---HHc---------
Q 040951 486 DMGGT-ERVWMKSAIVERELGNNAEER-GFIEEGLKRFPSFFN-------------LWLMLGQLE---ERL--------- 538 (701)
Q Consensus 486 ~~~p~-~~~~~~~a~~~~~~g~~~~A~-~~~~~al~~~p~~~~-------------~~~~la~~~---~~~--------- 538 (701)
..+|+ ...+..+-.++....+-.++. .+|...-+..|.... +-..+..+. .+.
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 55555 333333333332122222222 334443333333100 000000000 000
Q ss_pred ----CCHHHHHHHHHHHh-------hhC------------CCCHHHH--HHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 539 ----GHLKEAKEAYQSGC-------NQC------------PNCIPLW--YSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 539 ----~~~~~A~~~~~~al-------~~~------------p~~~~~~--~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
.++.+.- +.++.+ ... |..+-+| +.++..+.. .|+++.|..+++.|+...|
T Consensus 327 ~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~---~g~~~~A~~yId~AIdHTP 402 (700)
T KOG1156|consen 327 RSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK---LGDYEVALEYIDLAIDHTP 402 (700)
T ss_pred HHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH---cccHHHHHHHHHHHhccCc
Confidence 1111111 222221 111 2233344 445666667 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcC-----------CC--h
Q 040951 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSD-----------RD--P 660 (701)
Q Consensus 594 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p-----------~~--~ 660 (701)
.-++.+...++++...|+.+.|...+..+-+.+-.+-.+-...+....+..+...+.+.+.+.. +- -
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcm 482 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCM 482 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhH
Confidence 9999999999999999999999999999988876654444333333222222222222222211 11 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 661 HVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 661 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
.....-|..|.++|++-.|++-|..+-+.
T Consensus 483 Wf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 483 WFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 23344577888888888888776655443
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=5.1e-16 Score=152.06 Aligned_cols=202 Identities=18% Similarity=0.113 Sum_probs=188.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVE 501 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~ 501 (701)
....+..++..+...|++++|+..+++++..+|++..++..++.++...|++++|...+++++...|. ..++..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999988 88999999999
Q ss_pred HHhCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHH
Q 040951 502 RELGNNAEERGFIEEGLKRF--PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLS 579 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~ 579 (701)
...|++++|+..|++++... |.....+..+|.++...|++++|...|.+++...|.++..+..++.++.. .|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL---RGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH---cCCHH
Confidence 99999999999999999854 55677899999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 580 KARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 580 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
+|...+++++...|.++..+...+.++...|+.++|..+.+.+....|
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999998888766544
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=4.9e-15 Score=139.71 Aligned_cols=258 Identities=16% Similarity=0.140 Sum_probs=227.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCh
Q 040951 366 CKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA-----EVLWLMGAKEKWLAGDV 440 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~g~~ 440 (701)
+.-.++.++|+..|-.+++.+|...++.+.+|.++.+.|..+.|+.+-+..+.. |+- ..+...+|+-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356778899999999999999999999999999999999999999988777654 532 34678899999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhCChHHHHHHH
Q 040951 441 PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT------ERVWMKSAIVERELGNNAEERGFI 514 (701)
Q Consensus 441 ~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~a~~~~~~g~~~~A~~~~ 514 (701)
+.|..+|.......---..+...+..+|....++++|++..++..+..+. ...+..++..+....+.++|+..+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999988765556778889999999999999999999999988776 566777888888889999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 515 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
.++++.+|++..+-+.+|+++...|++++|++.++.+++.+|.. +.+.-.+..+|.+ .|+..+.+..+.++.+.++
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~---lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ---LGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999997 5667888899999 9999999999999999888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 594 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
.. ++-..++.+.....-.+.|..++.+-+...|+
T Consensus 281 g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 281 GA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred Cc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 65 45556666666666678899999999999996
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.5e-16 Score=148.15 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=149.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A 443 (701)
..|.+.|-+.+|...++..++..| .++.+..++.+|.+..++..|..++...+...|.+.......++++..+++.+.|
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHH
Confidence 445666666666666666666665 4455666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
.++|+.+++..|.+.++.-..+.-|.-.++++-|+..|.+++...-. ++++..+|.++...++++-++..|++++....
T Consensus 310 ~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 310 LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 66666666666666665555555555566666666666666665544 66666666666666666666666666665432
Q ss_pred --C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 523 --S-FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 523 --~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
+ -.++|+++|.+....||+.-|..+|+-++..+|++.+++.+++.+..+ .|++..|++++..+-...|+-.+..
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r---~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR---SGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh---cCchHHHHHHHHHhhhhCccccccc
Confidence 1 245666666666666666666666666666666666666666666666 6666666666666666666544443
Q ss_pred H
Q 040951 600 L 600 (701)
Q Consensus 600 ~ 600 (701)
.
T Consensus 467 ~ 467 (478)
T KOG1129|consen 467 T 467 (478)
T ss_pred c
Confidence 3
No 77
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=160.12 Aligned_cols=231 Identities=18% Similarity=0.077 Sum_probs=204.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Q 040951 394 LKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRE 473 (701)
Q Consensus 394 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~ 473 (701)
+.-|..+++.|+..+|.-.|+.+++.+|.+.++|..+|.+....++-..|+..++++++.+|++.++.+.++-.|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH---------HHhCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 040951 474 LERARMLLAKARDMGGTERVWMKSAIVE---------RELGNNAEERGFIEEGLKRFP--SFFNLWLMLGQLEERLGHLK 542 (701)
Q Consensus 474 ~~~A~~~~~~a~~~~p~~~~~~~~a~~~---------~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~ 542 (701)
-..|..++.+-+...|. ..|...+..- .....+.....+|-.+....| .++++...||.+|.-.|+|+
T Consensus 369 q~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999999876654 1111111000 011123345567777777888 68999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 543 EAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 543 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
+|+.+|+.+|...|++..+|..||-.+.. ..+..+|+..|.+|+++.|....+++.+|..+...|.|++|..+|-.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN---~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLAN---GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcC---CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHhCCC
Q 040951 623 LQKCPN 628 (701)
Q Consensus 623 l~~~p~ 628 (701)
|...+.
T Consensus 525 L~mq~k 530 (579)
T KOG1125|consen 525 LSMQRK 530 (579)
T ss_pred HHhhhc
Confidence 998775
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.72 E-value=5.7e-14 Score=144.19 Aligned_cols=234 Identities=18% Similarity=0.174 Sum_probs=125.8
Q ss_pred hcHHHHHHHHHHHhhhCCCCHHHH-HHHHhh---cCcchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHHH
Q 040951 166 KEEAAARKLITKGCNMCPKNEDVW-LEACRL---ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLRM 238 (701)
Q Consensus 166 g~~~~A~~~~~~~~~~~P~~~~~w-l~~~~l---~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~k 238 (701)
+.+....+++++.++..|++.+.. +....| +..++|-..++.+++.+|.|.--|..++-+.. ++++|++.|+.
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 678888999999999999888764 333333 45567888888888888888777776665554 44555555555
Q ss_pred HHHhcCCCHHHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 239 ALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEE 318 (701)
Q Consensus 239 al~~~P~~~~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~ 318 (701)
||...|+|..+|..+.-++ +++++++.....=++.++..|.....|+.+|..+.
T Consensus 101 Al~~~~dN~qilrDlslLQ--------------------------~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 101 ALKIEKDNLQILRDLSLLQ--------------------------IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred HHhcCCCcHHHHHHHHHHH--------------------------HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 5555555555554433221 12344444444555555555555555555555555
Q ss_pred HcCChhHHHHHHHHHHHHhhcCcccC---CHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 319 ANGNTSMVGKIIERGIRALQGEEVVI---DRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLK 395 (701)
Q Consensus 319 ~~g~~~~a~~~~~~a~~~~~~~~~~~---~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 395 (701)
-.|++..|..+++...+......... .....+.... .....|.+++|.+.+..--...-+....-..
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~----------i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ----------ILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH----------HHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 55555555555555544432110000 0011111111 1244444444444333322222233334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 040951 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKW 435 (701)
Q Consensus 396 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 435 (701)
-+.++...|++++|..+|...+..+|++...+..+-.+++
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 5555666666666666666666666666655555555554
No 79
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.70 E-value=9.2e-13 Score=132.51 Aligned_cols=410 Identities=13% Similarity=0.172 Sum_probs=303.3
Q ss_pred HHHhhhCCCCHHHHHHHHhhc---CcchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHHHHHHhcCCCHHH
Q 040951 176 TKGCNMCPKNEDVWLEACRLA---RPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLRMALDEIPDSVRL 249 (701)
Q Consensus 176 ~~~~~~~P~~~~~wl~~~~l~---~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~kal~~~P~~~~l 249 (701)
++-++.+|.+.+.|-..++-. ..++.+..+++.+...|.+...|..+++.+. ++....++|.++|...-+ .+|
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhH
Confidence 677889999999998888753 3469999999999999999999999998776 788888999999876543 889
Q ss_pred HHHHHhhc-----CHHHHHHHHHHH----H---HHCCCCHHHHHHHHhc-------c------ChHHHHHHHHHHHHhCC
Q 040951 250 WKALVEIS-----SEEEARILLHRA----V---ECCPLDVELWLALARL-------E------TYGVARSVLNKARKKLP 304 (701)
Q Consensus 250 ~~~~~~l~-----~~~~A~~~l~~a----~---~~~P~~~~l~~~l~~l-------~------~~~~A~~~l~~a~~~~p 304 (701)
|+.|+..- ....++....+| + -.++.+..+|..++.+ | +.+..+.+|++|+..--
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 99887542 222233322222 2 2467788889887764 2 45668899999987543
Q ss_pred CC-HHHHHHHHHHHHHcC-------------ChhHHHHHHHHHHHHhhc---C-cc---------cCCHHHHHHHHHHHH
Q 040951 305 KE-RAIWIAAAKLEEANG-------------NTSMVGKIIERGIRALQG---E-EV---------VIDRDTWMKEAEIAE 357 (701)
Q Consensus 305 ~~-~~~~~~~a~~~~~~g-------------~~~~a~~~~~~a~~~~~~---~-~~---------~~~~~~w~~~a~~~e 357 (701)
.+ ..+|..+...+...+ .+..|..+++........ . .. ....+.|.....+..
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 33 457777766655433 244566666554433111 0 00 013455777776542
Q ss_pred HcCCcHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC
Q 040951 358 KAGSDAEECKKRGSI--ETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS--------------RESLIALLRKAVTYFP 421 (701)
Q Consensus 358 ~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p 421 (701)
..+-. ...|.. ....-+|++++...+..+++|+.++......++ .+++.+++++++...-
T Consensus 249 sNpL~----t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 249 SNPLR----TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred cCCcc----cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 22210 011222 234456899999999999999999888877776 7889999999987533
Q ss_pred -CcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHH
Q 040951 422 -QAEVLWLMGAKEKWLAGD---VPAARDILQEAYATIPNS-EEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWM 495 (701)
Q Consensus 422 -~~~~~~~~~a~~~~~~g~---~~~A~~~l~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~ 495 (701)
.+..+++.++......-+ .+..-..+++++.....+ .-+|..+.+.-.+..-...|+.+|.++.+..-. ..++.
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 455667777776655434 677778888888765333 336778888888888999999999999986655 57777
Q ss_pred HHHHH-HHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--CCC-CHHHHHHHHHHHhh
Q 040951 496 KSAIV-ERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ--CPN-CIPLWYSLANLEEK 571 (701)
Q Consensus 496 ~~a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~ 571 (701)
..|.+ |...++..-|..+|+-.++.+++++..-+.+...+...++-..++.+|++++.. .|+ +.++|-.+...+..
T Consensus 405 a~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 405 AAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 77777 456799999999999999999999999999999999999999999999999987 333 47899999999999
Q ss_pred hccCCCHHHHHHHHHHHHHhCC
Q 040951 572 RNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 572 ~~~~g~~~~A~~~~~~a~~~~p 593 (701)
-|+...++++-++-....|
T Consensus 485 ---vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 485 ---VGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ---cccHHHHHHHHHHHHHhcc
Confidence 9999999998888777776
No 80
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=1e-14 Score=146.49 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=128.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh--HHHHH
Q 040951 437 AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENR-ELERARMLLAKARDMGGT-ERVWMKSAIVERELGNN--AEERG 512 (701)
Q Consensus 437 ~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~--~~A~~ 512 (701)
.+..++|+..+.+++..+|++..+|...+.++...| .+++++..+++++..+|. ..+|...+.+....|.. ++++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 445555666666666666666666666555555555 355666666666665555 55565555555555542 56677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccC---CC----HHHHHHHH
Q 040951 513 FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL---NG----LSKARAVL 585 (701)
Q Consensus 513 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---g~----~~~A~~~~ 585 (701)
+++++++.+|.+..+|...+.++...|+++++++.+.++++.+|.+..+|...+.+... . |. .++++.+.
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~---~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR---SPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh---ccccccccccHHHHHHHH
Confidence 77788888888888888888888888888888888888888888888888777777655 3 22 24677777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCH
Q 040951 586 SVARLKNPLNPEIWLATIRAESK----HGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 586 ~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~ 630 (701)
.+++..+|++..+|..++.++.. .++..+|...+.++++..|+++
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 78888888888888888887766 2344556666666666666543
No 81
>PLN02789 farnesyltranstransferase
Probab=99.68 E-value=2.7e-14 Score=143.40 Aligned_cols=205 Identities=10% Similarity=0.020 Sum_probs=159.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh--HHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHG-SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDV--PAA 443 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~--~~A 443 (701)
...+.+++|+..+.+++..+|.+..+|...+.++...| ++++++..+++++..+|++..+|...+.++...|.. +++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 45667788888888888888888888888888888887 578888888888888888888888888877777753 677
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh---CCh----HHHHHHHH
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVEREL---GNN----AEERGFIE 515 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~---g~~----~~A~~~~~ 515 (701)
+.+++++++.+|++..+|...+.++...|+++++++.+.++++..|. ..+|...+.+.... |.+ +.++.+..
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888777 77787777666544 222 45677777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 516 EGLKRFPSFFNLWLMLGQLEER----LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
+++..+|++..+|..++.++.. .+...+|.+.+.+++...|.++.+.-.++.++..
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 8888888888888888877766 3445667777777777777777777777777764
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.68 E-value=3.2e-13 Score=141.60 Aligned_cols=309 Identities=15% Similarity=0.013 Sum_probs=228.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHH
Q 040951 303 LPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHA 382 (701)
Q Consensus 303 ~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~a 382 (701)
+|+.+..+..++.++...|+.+.+...+.++....+.+.. ........+.. +...|++++|..+++++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~a~~----------~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT--ERERAHVEALS----------AWIAGDLPKALALLEQL 69 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC--HHHHHHHHHHH----------HHHcCCHHHHHHHHHHH
Confidence 6899999999999999999999988888888887665531 23444443433 38899999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 040951 383 CTVFLTKKSIWLKAAQLEKT----HGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSE 458 (701)
Q Consensus 383 l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~ 458 (701)
+..+|++..++.. +..+.. .|....+...+......+|........++.++...|++++|+..++++++.+|++.
T Consensus 70 l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~ 148 (355)
T cd05804 70 LDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA 148 (355)
T ss_pred HHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999977764 333333 44555555555554455677777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH-HHH---
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKARDMGGT-----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN-LWL--- 529 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~--- 529 (701)
.++..++.++...|++++|+..+++++...|. ...|..++.++...|++++|+..|++++...|.... ...
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 99999999999999999999999999997753 345678899999999999999999999877663211 111
Q ss_pred -HHHHHHHHcCCHHHHHHH---HHHHhhhCCC--CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC---------
Q 040951 530 -MLGQLEERLGHLKEAKEA---YQSGCNQCPN--CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL--------- 594 (701)
Q Consensus 530 -~la~~~~~~~~~~~A~~~---~~~al~~~p~--~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~--------- 594 (701)
.+...+...|....+... ........|. ........+.++.. .|+.+.|...++......-.
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG---AGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 112223334433333332 1221111122 22333456777778 89999999999887653321
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 595 NPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 595 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
...+....+..+...|++++|...+..++....
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 235667778888999999999999999988753
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.9e-15 Score=143.08 Aligned_cols=320 Identities=15% Similarity=0.040 Sum_probs=258.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A 443 (701)
..+.....|..|+..|..+++.+|++...|...+..++..|+++.+..-.++.+...|..+......++++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999888888888888888877777
Q ss_pred HHHHHHHH---------------HhC---CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 040951 444 RDILQEAY---------------ATI---PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVEREL 504 (701)
Q Consensus 444 ~~~l~~a~---------------~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~ 504 (701)
...|+..- ..+ |....+.+.-+.++...|++++|...--..++..+. ....+..+.++...
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 65554211 111 223345566788999999999999999999999988 88888889999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC----HHHHHHHHHH
Q 040951 505 GNNAEERGFIEEGLKRFPSFFN------------LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC----IPLWYSLANL 568 (701)
Q Consensus 505 g~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 568 (701)
++.+.|+..|++++..+|+... .|..-|.-..+.|++..|.+.|..++.++|++ ..++...+.+
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 9999999999999999998643 45555666778899999999999999999997 5568888999
Q ss_pred HhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHhcCCCccc-
Q 040951 569 EEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN--SGILWAELIKMVPHHDR- 645 (701)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~l~~~~~~~~~~~~~- 645 (701)
..+ .|+..+|+...+.++.++|.....+...+.++...++++.|.+.|+++++...+ ....|.....-...+.+
T Consensus 297 ~~r---Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRk 373 (486)
T KOG0550|consen 297 NIR---LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRK 373 (486)
T ss_pred hcc---cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhh
Confidence 999 999999999999999999999999999999999999999999999999998765 33334333221111111
Q ss_pred ------------------hhHHHHHHHhcCCCh--------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 646 ------------------KSKGKDALVKSDRDP--------HVFAAVAKLFWHDRKVDKARNWFNKA 686 (701)
Q Consensus 646 ------------------~~~~~~al~~~p~~~--------~~~~~lg~~~~~~g~~~~A~~~~~~a 686 (701)
++....+|...|+-. .-+..+|..|...+++.++.++..-.
T Consensus 374 d~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 374 DWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 222334566666321 13456888888888888888765433
No 84
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.67 E-value=2.7e-11 Score=121.31 Aligned_cols=415 Identities=16% Similarity=0.221 Sum_probs=251.5
Q ss_pred HHHHHHhhhCCCCHHHHHHHHhhc----CcchHHHHHHHHHHhCCCcHHHHHHHHHccc----CHHHHHHHHHHHHHhcC
Q 040951 173 KLITKGCNMCPKNEDVWLEACRLA----RPDEAKGVVAKGVRQIPKSVRLWLQAAELDH----DKANKSRVLRMALDEIP 244 (701)
Q Consensus 173 ~~~~~~~~~~P~~~~~wl~~~~l~----~~~~A~~~l~~al~~~P~~~~lw~~~~~le~----~~~~a~~~l~kal~~~P 244 (701)
.++..++...|.++.+|+.++... .+-.-..+|.+++..+|+++.+|+-++.++. +.+.++.++.++|..+|
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 568888999999999999888763 2447788999999999999999999988775 67889999999999999
Q ss_pred CCHHHHHHHHhhc-CHHHHHHHHHHHHHHCCCCHH--------HHHHHHhc-----------c-----ChHHH----HHH
Q 040951 245 DSVRLWKALVEIS-SEEEARILLHRAVECCPLDVE--------LWLALARL-----------E-----TYGVA----RSV 295 (701)
Q Consensus 245 ~~~~l~~~~~~l~-~~~~A~~~l~~a~~~~P~~~~--------l~~~l~~l-----------~-----~~~~A----~~~ 295 (701)
+++.||..|.+++ .+-.-...-.+.+..+..+.+ .|..++.. + .++.+ ..+
T Consensus 172 dsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i 251 (568)
T KOG2396|consen 172 DSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNI 251 (568)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHH
Confidence 9999999999887 443333334444444444331 11111100 0 00000 111
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHH
Q 040951 296 LNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETA 375 (701)
Q Consensus 296 l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A 375 (701)
+.-.....|.++..|-.+++-... ++.+..-...++ ++.....--+-+..
T Consensus 252 ~d~~~~~~~~np~~~~~laqr~l~---------i~~~tdl~~~~~---------------------~~~~~~~~~k~s~~ 301 (568)
T KOG2396|consen 252 IDDLQSKAPDNPLLWDDLAQRELE---------ILSQTDLQHTDN---------------------QAKAVEVGSKESRC 301 (568)
T ss_pred HHHHhccCCCCCccHHHHHHHHHH---------HHHHhhccchhh---------------------hhhchhcchhHHHH
Confidence 111122234444444444432211 111110000000 00111112233455
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-----C-CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 376 RAIFSHACTVFLTKKSIWLKAAQLEKTH-----G-SRESLIALLRKAVTYF---PQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 376 ~~~~~~al~~~p~~~~~~~~la~~~~~~-----g-~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
.++|+.++..-|+ ...|..+..++... | .......+++.+.... +..+..+..+..++...+. ++..
T Consensus 302 ~~v~ee~v~~l~t-~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~---~r~~ 377 (568)
T KOG2396|consen 302 CAVYEEAVKTLPT-ESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE---AREV 377 (568)
T ss_pred HHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch---HhHH
Confidence 6889998887764 44676666665532 2 3445556666666553 3444445555555544443 3333
Q ss_pred HHHHH-HhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHhCC-hHHHHH-HHHHHHHh
Q 040951 447 LQEAY-ATIPNSEEIWLAAFKLEFENRELERARMLLAK---ARDMGGTERVWMKSAIVERELGN-NAEERG-FIEEGLKR 520 (701)
Q Consensus 447 l~~a~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~---a~~~~p~~~~~~~~a~~~~~~g~-~~~A~~-~~~~al~~ 520 (701)
-.+.. +...++...|.....+...... .+.-.|.. .+...+....+......- .|+ ....+. .+-.++..
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~--~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS--EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh--hccchhHHHHHHHHHHHHH
Confidence 32222 3345678888877766653322 22222322 222233323333222221 233 222222 22222222
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 521 --FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 521 --~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
.|+...+-..+-.++.+.|-+..|+..|.+....-|-+..++..+.+++.... .-+..-++.+|+.++.....++++
T Consensus 454 ~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~-sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 454 VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQE-SCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHh-hcCchHHHHHHHHHHHHhCCChHH
Confidence 35566677778888899999999999999999999999999999988876411 235889999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
|..+-..+...|..+.+-.+|.+|++.-
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTL 560 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhh
Confidence 9999999999999999999999998753
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=8.7e-12 Score=127.08 Aligned_cols=383 Identities=17% Similarity=0.115 Sum_probs=216.3
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHH-HH---HHhhcCHHHHHHHHHHHHHHCCCCH---HHHHHHHhccChHHHHHHHHHHH
Q 040951 228 DKANKSRVLRMALDEIPDSVRLW-KA---LVEISSEEEARILLHRAVECCPLDV---ELWLALARLETYGVARSVLNKAR 300 (701)
Q Consensus 228 ~~~~a~~~l~kal~~~P~~~~l~-~~---~~~l~~~~~A~~~l~~a~~~~P~~~---~l~~~l~~l~~~~~A~~~l~~a~ 300 (701)
++++|.....+.+...|+..... .. +|....|++|..+.++-....-.+. +-..+.-+++..++|.+.++
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~--- 103 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK--- 103 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---
Confidence 66677777777777777777632 22 3445577777644433222111111 22233345677777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHH-H
Q 040951 301 KKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAI-F 379 (701)
Q Consensus 301 ~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~-~ 379 (701)
-.++.+..+....|+++.+.|+|++|..+|+..++...++.....+...+..+. +... .
T Consensus 104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--------------------~l~~~~ 163 (652)
T KOG2376|consen 104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--------------------ALQVQL 163 (652)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--------------------hhhHHH
Confidence 344555667777778888888888888888877664333211000011111000 0000 1
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------Cc--------HHHHHHHHHHHHHcCChHHH
Q 040951 380 SHACTVFLT-KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP-------QA--------EVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 380 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~--------~~~~~~~a~~~~~~g~~~~A 443 (701)
.+.+...|. +.+..++.+.++...|++.+|++++++++..|- .+ ..+...++.++...|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 111111222 233444444444444444444444444422211 00 11233444444444444444
Q ss_pred HHHHHHHHHhCCCCHH-------------------------------------------------HHHHHHHHHHHcCcH
Q 040951 444 RDILQEAYATIPNSEE-------------------------------------------------IWLAAFKLEFENREL 474 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~-------------------------------------------------~~~~la~~~~~~~~~ 474 (701)
..+|...+..+|.+.. ++...+.+.+-.+..
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444444444433221 333444444445555
Q ss_pred HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 475 ERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF-FNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 475 ~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
+.++++....-...|. ..+...-+...... .+.+|..++...-+.+|.. ..+.+..+++...+|+++.|++++...
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5565555554444454 22222222222222 6888999999999999987 667888899999999999999999933
Q ss_pred hh-------hCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHhcCCHHHHHH
Q 040951 552 CN-------QCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN----P---LNPEIWLATIRAESKHGNKKEADS 617 (701)
Q Consensus 552 l~-------~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~----p---~~~~~~~~l~~~~~~~g~~~~A~~ 617 (701)
+. ..-..+.+...+..++.. .++.+-|..++..++.-. + ..-.+|...+.+..+.|+-++|..
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~---~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYK---IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHh---ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 21 112234555555566666 666666777777776532 2 223567778889999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 040951 618 FIAKALQKCPNSGILWAELI 637 (701)
Q Consensus 618 ~~~~al~~~p~~~~l~~~~~ 637 (701)
++++.++.+|++..+....+
T Consensus 480 ~leel~k~n~~d~~~l~~lV 499 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLV 499 (652)
T ss_pred HHHHHHHhCCchHHHHHHHH
Confidence 99999999999987776644
No 86
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.64 E-value=5e-12 Score=130.20 Aligned_cols=181 Identities=18% Similarity=0.210 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI-PNSEEIWLAAFKLEF 469 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~-p~~~~~~~~la~~~~ 469 (701)
..|..+..+....|+++.+.-.|++++--|......|..++...+..|+.+-|..++.++.+.. |..+.+.+..+.+..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 3555555555555555555555555555555555555555555555555555555555555443 444555555555555
Q ss_pred HcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHH---HHHHHHHhCCC---CHHHHHHHHHH-HHHcCCH
Q 040951 470 ENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERG---FIEEGLKRFPS---FFNLWLMLGQL-EERLGHL 541 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~la~~-~~~~~~~ 541 (701)
..|++..|..+++++....|+ ..+-...+.++...|+.+.+.. ++.....-..+ ....+..++.. +.-.++.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 555555555555555555555 4444444455555555555442 11111111111 12233333333 2234555
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 542 KEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 542 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
+.|+..+.+++...|++..+|..+.++...
T Consensus 458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 458 DLARIILLEANDILPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHHHHHHHhhhcCCccHHHHHHHHHHHHh
Confidence 555555555555555555555555555443
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.63 E-value=8.8e-13 Score=138.27 Aligned_cols=305 Identities=15% Similarity=0.056 Sum_probs=195.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 040951 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA---EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL 462 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~ 462 (701)
+|+....+..++.++...|+.+.+...+.++....|.+ .......+..++..|++++|...+++++..+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888888888888888888888888887776644 445666677778888888888888888888888876665
Q ss_pred HHHHHHHH----cCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 463 AAFKLEFE----NRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER 537 (701)
Q Consensus 463 ~la~~~~~----~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 537 (701)
. +..+.. .+....+...+.......|. ...+..++.++...|++++|...++++++..|+++.++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 3 333333 34444444444442233444 45556677788888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHhhhCCCCH----HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH-HHHH----HHHHHHHh
Q 040951 538 LGHLKEAKEAYQSGCNQCPNCI----PLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP-EIWL----ATIRAESK 608 (701)
Q Consensus 538 ~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~----~l~~~~~~ 608 (701)
.|++++|+..+++++...|.++ ..|..++.++.. .|++++|+..|++++...|... .... .+...+..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~---~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE---RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH---CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 8888888888888888776432 346678888888 8888888888888876655211 1111 11222233
Q ss_pred cCCHHHHHHH---HHHHHHhCCCCHHHH--HHHHhcCCCccchhHHHHHH----H---h------cCCChHHHHHHHHHH
Q 040951 609 HGNKKEADSF---IAKALQKCPNSGILW--AELIKMVPHHDRKSKGKDAL----V---K------SDRDPHVFAAVAKLF 670 (701)
Q Consensus 609 ~g~~~~A~~~---~~~al~~~p~~~~l~--~~~~~~~~~~~~~~~~~~al----~---~------~p~~~~~~~~lg~~~ 670 (701)
.|....+... ........|.....+ ...+......++...+...+ . . ......+....+.++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 3432222222 111111112211111 11222212222222121111 1 1 112355677889999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCc
Q 040951 671 WHDRKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 671 ~~~g~~~~A~~~~~~al~~~p~~~ 694 (701)
+..|++++|...+..++..-...|
T Consensus 318 ~~~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 318 FAEGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998765444
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=9.7e-12 Score=121.49 Aligned_cols=285 Identities=15% Similarity=0.077 Sum_probs=198.6
Q ss_pred cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHH
Q 040951 287 ETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEEC 366 (701)
Q Consensus 287 ~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~ 366 (701)
|+|.+|.+.+.++-+..+...-.++..++...+.|+.+.+..++.++.+..++.. ....+..++..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~----l~v~ltrarll---------- 163 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT----LAVELTRARLL---------- 163 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----HHHHHHHHHHH----------
Confidence 7899999999888888888788888888888899999999988888877544442 34455555544
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-----HHHHcC---
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAK-----EKWLAG--- 438 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~-----~~~~~g--- 438 (701)
..+|+++.|+.-..++++..|.++.+......+|...|++.+...++.+.-+..--+..-...+=. ++....
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 888999999999999999999999988888899999999998888888877664432221111110 111122
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 040951 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGL 518 (701)
Q Consensus 439 ~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al 518 (701)
..+.-....+..-..-.+++.+...++.-+...|+.++|.++.+.+++..-++.+...++. ..-+++..-++..++.+
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~--l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPR--LRPGDPEPLIKAAEKWL 321 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhh--cCCCCchHHHHHHHHHH
Confidence 2222222333333333345667777777777888888888888888777666553333332 24567777777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 519 KRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 519 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
+..|+++.++..+|++|.+.+.|.+|...|+.+++..|. ..-|..+|..+.+ .|+..+|-..++.++..
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~---~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQ---LGEPEEAEQVRREALLL 390 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHH---cCChHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777776553 3556777777777 77777777777776643
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.6e-11 Score=122.67 Aligned_cols=445 Identities=14% Similarity=0.100 Sum_probs=280.6
Q ss_pred hhhcHHHHHHHHHHHhhhCCCCHHHH----HHHHhhcCcchHHHHHHHHHHhCCCcHH-HHHHHHHccc-CHHHHHHHHH
Q 040951 164 LAKEEAAARKLITKGCNMCPKNEDVW----LEACRLARPDEAKGVVAKGVRQIPKSVR-LWLQAAELDH-DKANKSRVLR 237 (701)
Q Consensus 164 ~~g~~~~A~~~~~~~~~~~P~~~~~w----l~~~~l~~~~~A~~~l~~al~~~P~~~~-lw~~~~~le~-~~~~a~~~l~ 237 (701)
..|++++|.+.+.+.+...|+.+++. +..+.+...+.|..+..+-..+.-.++. .-..++.+.. ..++|...+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 35789999999999999999999874 4445556666666443332221112222 2334444443 6778888887
Q ss_pred HHHHhcCCCHH-HHHH-HHhhcCHHHHHHHHHHHHHHCCCCHHHH--HHHHhccChHHHHHHHHHHHHhCCC-CHHHHHH
Q 040951 238 MALDEIPDSVR-LWKA-LVEISSEEEARILLHRAVECCPLDVELW--LALARLETYGVARSVLNKARKKLPK-ERAIWIA 312 (701)
Q Consensus 238 kal~~~P~~~~-l~~~-~~~l~~~~~A~~~l~~a~~~~P~~~~l~--~~l~~l~~~~~A~~~l~~a~~~~p~-~~~~~~~ 312 (701)
.++..+.... |... +.++++|++|..+|+..++..-++.+.- ..+...+.--.+. ..+.+...|+ +.+..+.
T Consensus 104 -~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~--~~q~v~~v~e~syel~yN 180 (652)
T KOG2376|consen 104 -GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ--LLQSVPEVPEDSYELLYN 180 (652)
T ss_pred -cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH--HHHhccCCCcchHHHHHH
Confidence 3333332222 2222 3366799999999999988776665432 2222222222222 3344445555 6889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhhc----Cccc-CCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 313 AAKLEEANGNTSMVGKIIERGIRALQG----EEVV-IDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFL 387 (701)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~a~~~~~~----~~~~-~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 387 (701)
.|.++...|++.+|+++++++++.... .... .....=+...... .+.++...|+.++|.++|...+..+|
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQ-----layVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQ-----LAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH-----HHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 999999999999999999999654322 1111 0111111111111 34566899999999999999999998
Q ss_pred CCHHHHHHHHHHHHHc----CCHH-HHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040951 388 TKKSIWLKAAQLEKTH----GSRE-SLIALLRKAVTYFP----------QAEVLWLMGAKEKWLAGDVPAARDILQEAYA 452 (701)
Q Consensus 388 ~~~~~~~~la~~~~~~----g~~~-~A~~~~~~al~~~p----------~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~ 452 (701)
.+.........-.... .-++ .+...++......+ .-..++...+.+....+..+.+++...+.-.
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~ 335 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPG 335 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc
Confidence 7765433222211111 1111 12222222221111 1123444555555556666777766666555
Q ss_pred hCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHH-------hCCC
Q 040951 453 TIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEEGLK-------RFPS 523 (701)
Q Consensus 453 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~p~ 523 (701)
..|....-.+...........+.+|..++....+.+|. ..+.+..+++....|++..|+.++...+. ..-.
T Consensus 336 ~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 336 MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 55553332233333333334789999999999999988 56777788999999999999999983331 1122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC----CC---CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 524 FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC----PN---CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 524 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
.|.+.-.+..++...++-+.|..++..++.-. +. -..++...+.+..+ .|+.++|.+.+++.++.+|++.
T Consensus 416 ~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr---~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 416 LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR---HGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh---cCchHHHHHHHHHHHHhCCchH
Confidence 35566666677888888777888887777532 22 24457778888889 9999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 597 EIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 597 ~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
++...++..|.+. +.+.|..+-.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhh
Confidence 9999998888766 5677766543
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=4.4e-12 Score=121.05 Aligned_cols=425 Identities=15% Similarity=0.080 Sum_probs=217.3
Q ss_pred cCHHHHHHHHHHHHHHCC---CCHHHHHHHH--hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040951 257 SSEEEARILLHRAVECCP---LDVELWLALA--RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331 (701)
Q Consensus 257 ~~~~~A~~~l~~a~~~~P---~~~~l~~~l~--~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~ 331 (701)
.||..|+.+++-...... ++..+|++++ .+|+|++|..+|.-+...+.-+.++|..+|.+..-.|.+.+|..+..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 466777776665553322 2456777654 45777777777777777665567777777777777777777776665
Q ss_pred HHHHHhhcCccc-----------CCHHHHHHHHHHH----HHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 332 RGIRALQGEEVV-----------IDRDTWMKEAEIA----EKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKA 396 (701)
Q Consensus 332 ~a~~~~~~~~~~-----------~~~~~w~~~a~~~----e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 396 (701)
++-+ ++.. .+...|+.+-+.. |..-+.|.....+-.|.+|+.+|.+++..+|+...+-..+
T Consensus 116 ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 116 KAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred hCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 5422 1100 0111222211110 0000134444566667777777777777777777666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----
Q 040951 397 AQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN----- 471 (701)
Q Consensus 397 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~----- 471 (701)
+-++.+..-++-+.+++.--+...|+++.+....+-...+.=+-..|..-........... +-.+...++.
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPFIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chhHHHHHHcCeEEE
Confidence 7777777777777777777777777776665555554444211111211111111110000 0000000000
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 472 RELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 472 ~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
.+-+.|++++-..++.. |++...++..+..+++..+|..+.+ ...|..|.-+...|.+....|+--..++.++-+
T Consensus 268 rngEgALqVLP~L~~~I--PEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKHI--PEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred eCCccHHHhchHHHhhC--hHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 11223333333333222 3344455555666666666665544 345666666666666665555444333333322
Q ss_pred h---hhCCC------CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 552 C---NQCPN------CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 552 l---~~~p~------~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
- ..-.. ..+....++....- ..++++.+.++...-.-.-++....+.+++.....|++.+|.++|-+.
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL---~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFL---SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 1 11111 12223344444433 445666666666655555555566666666666666666666666544
Q ss_pred HHhCCCCHHHHHHH-HhcCCCccchhHHHHHHHhc--CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc
Q 040951 623 LQKCPNSGILWAEL-IKMVPHHDRKSKGKDALVKS--DRD-PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWA 698 (701)
Q Consensus 623 l~~~p~~~~l~~~~-~~~~~~~~~~~~~~~al~~~--p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~ 698 (701)
-...-.+..+|... +.-.-+.+.-..+.+.+-+. |.+ ...+-.++...++.++|==|.+.|...-.++|. ++-|.
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnWe 498 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENWE 498 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccccC
Confidence 22221222222221 11111122222222222222 212 223445677778888888888888888888886 66663
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=1.6e-11 Score=120.09 Aligned_cols=286 Identities=16% Similarity=0.112 Sum_probs=233.6
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCChHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQ-AEVLWLMGAKEKWLAGDVPAARD 445 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~ 445 (701)
...|+|.+|.....+.-+..+.....++.-+....+.|+.+.+-.++.++-+..++ .....+..+++....|+++.|+.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 67899999999999998888888888888999999999999999999999888444 34567788899999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC--CHHH--HHHHH--HHHHHhCChHHH---HHHHHH
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG--TERV--WMKSA--IVERELGNNAEE---RGFIEE 516 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p--~~~~--~~~~a--~~~~~~g~~~~A---~~~~~~ 516 (701)
-+.++.+..|.++.+......+|...|++.....++.+..+..- ++.. +-..+ .++.+.++-..+ ...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999887542 2111 11111 112222332222 224444
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 517 GLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 517 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
.-..-.+++.+...++.-+.+.|+.++|.++.+.+++..-+.. +...+.. .. -++...=++..++.++..|++|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~---~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPR--LR---PGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhh--cC---CCCchHHHHHHHHHHHhCCCCh
Confidence 3333345688999999999999999999999999999765443 3333332 24 6788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCH
Q 040951 597 EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKV 676 (701)
Q Consensus 597 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 676 (701)
.++..+|.++.+.+.|.+|...++.++..-|+ ..-+..+|..|.+.|+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-------------------------------~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-------------------------------ASDYAELADALDQLGEP 377 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-------------------------------hhhHHHHHHHHHHcCCh
Confidence 99999999999999999999999999999985 77888899999999999
Q ss_pred HHHHHHHHHHHHh
Q 040951 677 DKARNWFNKAVSL 689 (701)
Q Consensus 677 ~~A~~~~~~al~~ 689 (701)
.+|...++.++..
T Consensus 378 ~~A~~~r~e~L~~ 390 (400)
T COG3071 378 EEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999854
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=6.2e-12 Score=133.62 Aligned_cols=299 Identities=16% Similarity=0.113 Sum_probs=224.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CC
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLA-----GD 439 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----g~ 439 (701)
++...|++++|+..++.....-++...+....|.++...|++++|...|...+..+|++...+..+..+.... .+
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 3488999999999999998889999999999999999999999999999999999999999999998887433 35
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRELE-RARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGL 518 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al 518 (701)
.+....+|++.....|.+..+...-..+. .-.++. .+..++...+... -|.++..+-.+|.......-...++....
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~Kg-vPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKG-VPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccC-CHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 77888999999999998655433222211 112333 2334444444321 24555555555442222222223333322
Q ss_pred Hh---------------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHH
Q 040951 519 KR---------------FPSFF--NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKA 581 (701)
Q Consensus 519 ~~---------------~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A 581 (701)
.. .|... .+++.+++.|...|++++|+++.++++.+.|..+++++..|+++.. .|++.+|
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh---~G~~~~A 247 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH---AGDLKEA 247 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---CCCHHHH
Confidence 11 11122 2457789999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHhcCCCccchhHHHHHHHhcCCC
Q 040951 582 RAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG--ILWAELIKMVPHHDRKSKGKDALVKSDRD 659 (701)
Q Consensus 582 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~l~~~~~~~~~~~~~~~~~~~al~~~p~~ 659 (701)
...++.|..+++.+--+-...+....+.|+.++|..++.......- ++ .++..- .
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQ----------------------c 304 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQ----------------------C 304 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHH----------------------H
Confidence 9999999999999988888899999999999999999887644432 21 111100 1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDP 691 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 691 (701)
.......|..|.+.|++..|++.|..+.+..-
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999998887643
No 93
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.8e-13 Score=131.15 Aligned_cols=267 Identities=13% Similarity=0.073 Sum_probs=193.5
Q ss_pred cCHHHHHHHHHHHHHHCCCCHHHHH----HHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040951 257 SSEEEARILLHRAVECCPLDVELWL----ALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIER 332 (701)
Q Consensus 257 ~~~~~A~~~l~~a~~~~P~~~~l~~----~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~ 332 (701)
.+|.+|+..+..|++.+|++...|. .+..+++|++|..-.++.++..|.........++++...++..+|...++.
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 3788888899999999998877764 355568888888888888888888877777777777777766666655551
Q ss_pred HHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHH
Q 040951 333 GIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVF---LTKKSIWLKAAQLEKTHGSRESL 409 (701)
Q Consensus 333 a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A 409 (701)
. ..+ ....|...+++.+..+ |.-..+-+.-+.++...|++++|
T Consensus 143 ~-------------~~~---------------------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 143 K-------------QAY---------------------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred h-------------hhh---------------------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 1 000 1112222333333222 32333444556677777778888
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCcHHHH
Q 040951 410 IALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEE------------IWLAAFKLEFENRELERA 477 (701)
Q Consensus 410 ~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~------------~~~~la~~~~~~~~~~~A 477 (701)
...--..++.++.+....+.-+.++...++.+.|+..|++++..+|+... .|..-+.-....|++..|
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 77777777777777777777777777777788888888888877777543 455566777778888888
Q ss_pred HHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 040951 478 RMLLAKARDMGGT-----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGC 552 (701)
Q Consensus 478 ~~~~~~a~~~~p~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 552 (701)
.+.|..++.+.|+ ...|...+.+...+|+..+|+...+.++.++|.....++..|.++...+++++|++.|++++
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888876 55677777778888888888888888888888888888888888888888888888888887
Q ss_pred hhCCC
Q 040951 553 NQCPN 557 (701)
Q Consensus 553 ~~~p~ 557 (701)
+...+
T Consensus 349 q~~~s 353 (486)
T KOG0550|consen 349 QLEKD 353 (486)
T ss_pred hhccc
Confidence 76544
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.55 E-value=7.3e-13 Score=129.91 Aligned_cols=191 Identities=16% Similarity=0.073 Sum_probs=150.7
Q ss_pred CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH---H
Q 040951 455 PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN---L 527 (701)
Q Consensus 455 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 527 (701)
+.....++..+..+...|+++.|...|++++...|+ ..+++.+|.++...|++++|+..|+++++.+|+++. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 446678888888888888888888888888888876 357788888888888888888888888888887765 6
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 528 WLMLGQLEERL--------GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 528 ~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
++.+|.++... |++++|++.|++++..+|++...+..+..+... .+.. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~---~~~~-----------------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL---RNRL-----------------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH---HHHH-----------------HHHH
Confidence 77888888765 778888888888888888886665444433222 1100 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKA 679 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 679 (701)
..++.++...|++.+|+..+++++..+|++ |..+.+++.+|.++...|++++|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDT---------------------------PATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCC---------------------------cchHHHHHHHHHHHHHcCCHHHH
Confidence 567888999999999999999999999963 44578999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 040951 680 RNWFNKAVSLDPD 692 (701)
Q Consensus 680 ~~~~~~al~~~p~ 692 (701)
..+++......|+
T Consensus 223 ~~~~~~l~~~~~~ 235 (235)
T TIGR03302 223 QDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHhhCCC
Confidence 9999988776664
No 95
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.54 E-value=2.4e-12 Score=134.96 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=192.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Q 040951 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY--------FPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI--- 454 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~--- 454 (701)
+|.-..+...++..|...|+++.|+..++.++.. +|.-......+|.+|...+++.+|+.+|++|+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666667777999999999999999999999987 45444555568999999999999999999998763
Q ss_pred --CCC---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 040951 455 --PNS---EEIWLAAFKLEFENRELERARMLLAKARDMG--------GT-ERVWMKSAIVERELGNNAEERGFIEEGLKR 520 (701)
Q Consensus 455 --p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 520 (701)
+++ ..++..++.+|...|++++|..++++++++. |. ...+..++.++...+++++|..++.+++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 333 3466789999999999999999999998743 11 455666788888999999999999998876
Q ss_pred C-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC--------CCCHHHHHHHHHHHhhhccCCCHHHHHHH
Q 040951 521 F-----P---SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC--------PNCIPLWYSLANLEEKRNGLNGLSKARAV 584 (701)
Q Consensus 521 ~-----p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~g~~~~A~~~ 584 (701)
. + .-+..+..+|.+|..+|++++|.++|++++.+. +........+|..+.+ .+.+.+|-..
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~---~k~~~~a~~l 431 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE---LKKYEEAEQL 431 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH---hcccchHHHH
Confidence 4 2 236789999999999999999999999999864 2224457778888888 8999999999
Q ss_pred HHHHHHhC----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 585 LSVARLKN----PLN---PEIWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 585 ~~~a~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
|.++.... |++ ...+.+++.+|...|+++.|.++.++++..
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 98887653 443 467899999999999999999999988753
No 96
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=2.1e-11 Score=127.96 Aligned_cols=224 Identities=17% Similarity=0.157 Sum_probs=187.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHH
Q 040951 364 EECKKRGSIETARAIFSHACTV--------FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY--------FPQAEVLW 427 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 427 (701)
..|..+|+++.|...++.+++. .|.-......+|.++...+++.+|..+|++++.. +|....++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4459999999999999999998 5555556667999999999999999999999975 34455678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC--------C-
Q 040951 428 LMGAKEKWLAGDVPAARDILQEAYATI-----PNSE---EIWLAAFKLEFENRELERARMLLAKARDMGG--------T- 490 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a~~~~-----p~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p--------~- 490 (701)
..++..|...|++++|..++++++++. ...+ ..+..++.++...+++++|..++++++++.- .
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 899999999999999999999998764 2222 3455788889999999999999999987531 2
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-------C
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRF--------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ-------C 555 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~ 555 (701)
+.++..+|.++...|++++|..+|++++++. +.....+..+|..|.+.+++..|...|.++..+ .
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 6788999999999999999999999999875 223557788888999999999999999888764 3
Q ss_pred CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 556 p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
|+....+.+++.+|.. +|++++|.++.+.++.
T Consensus 447 ~~~~~~~~nL~~~Y~~---~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRA---QGNYEAAEELEEKVLN 478 (508)
T ss_pred CchHHHHHHHHHHHHH---cccHHHHHHHHHHHHH
Confidence 4446679999999999 9999999999998874
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.51 E-value=3.2e-12 Score=125.33 Aligned_cols=196 Identities=15% Similarity=0.042 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---H
Q 040951 387 LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE---VLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEE---I 460 (701)
Q Consensus 387 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~---~ 460 (701)
+.....++.++..+...|+++.|...|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34455566666666666666666666666666655543 34555566666666666666666666666555443 3
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH 540 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 540 (701)
++.++.++.... +.++...|++++|+..|++++..+|++...+..+..+....+.
T Consensus 110 ~~~~g~~~~~~~-------------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~ 164 (235)
T TIGR03302 110 YYLRGLSNYNQI-------------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR 164 (235)
T ss_pred HHHHHHHHHHhc-------------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH
Confidence 444444443320 0000112555666666666666666654443332222111000
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 040951 541 LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN---PEIWLATIRAESKHGNKKEADS 617 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~ 617 (701)
. ......++.++.. .|++.+|+..|++++...|++ +.++..++.++...|++++|..
T Consensus 165 ~-----------------~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 165 L-----------------AGKELYVARFYLK---RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred H-----------------HHHHHHHHHHHHH---cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 0112345555566 666666666666666665543 3566666666666666666666
Q ss_pred HHHHHHHhCC
Q 040951 618 FIAKALQKCP 627 (701)
Q Consensus 618 ~~~~al~~~p 627 (701)
+++......|
T Consensus 225 ~~~~l~~~~~ 234 (235)
T TIGR03302 225 AAAVLGANYP 234 (235)
T ss_pred HHHHHHhhCC
Confidence 6665555444
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=9.6e-12 Score=114.00 Aligned_cols=177 Identities=16% Similarity=0.077 Sum_probs=144.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh
Q 040951 429 MGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNN 507 (701)
Q Consensus 429 ~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~ 507 (701)
+..-.....|..+-|..++++.....|++..+-...|..+...|++++|+++|+..++.+|+ ..++.....+...+|..
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 33344445777888888888888888888888888888888888888888888888888887 44555556666778888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~ 587 (701)
-.|++.+...++.++++.++|..++.+|...|+|++|.-+|++.+-..|.++..+..++.++...|+..++.-|+++|.+
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988874445578889999999
Q ss_pred HHHhCCCCHHHHHHHHHH
Q 040951 588 ARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 588 a~~~~p~~~~~~~~l~~~ 605 (701)
+++.+|.+...|+.+..+
T Consensus 217 alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 217 ALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHhChHhHHHHHHHHHH
Confidence 999999777766655443
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.50 E-value=8.8e-12 Score=137.82 Aligned_cols=246 Identities=14% Similarity=0.194 Sum_probs=190.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC----cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 040951 375 ARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY-FPQ----AEVLWLMGAKEKWLAGDVPAARDILQE 449 (701)
Q Consensus 375 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~~a~~~~~~g~~~~A~~~l~~ 449 (701)
..+-|++.+..+|+..-.|+.|..+..+.++.++|++++++|+.. ++. -..+|..+.++...-|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 445577788888888888888888888888888888888888865 332 235677777777777877778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC--CHH
Q 040951 450 AYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS--FFN 526 (701)
Q Consensus 450 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 526 (701)
|.+.+. ...++..+..+|...+.+++|.++|+.+++.+.. ..+|..++.++..+++-+.|..++.+|++.-|. +..
T Consensus 1523 Acqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 887653 3567778888888888888888888888887775 888888888888888888888888888888887 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC--CCCH-HHHHHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN--PLNP-EIWLATI 603 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~-~~~~~l~ 603 (701)
+....+++.++.|+.+.++.+|+..+..+|.-.++|.-|++...+ +|+...++.+|++++.+. |+.. .++..+.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik---~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK---HGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 777788888888888888888888888888888888888888888 888888888888888765 3332 4555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 040951 604 RAESKHGNKKEADSFIAKALQ 624 (701)
Q Consensus 604 ~~~~~~g~~~~A~~~~~~al~ 624 (701)
.++...|+-..+..+=.+|.+
T Consensus 1679 eyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHhcCchhhHHHHHHHHHH
Confidence 677777776666655555554
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=4.8e-10 Score=119.36 Aligned_cols=295 Identities=14% Similarity=0.060 Sum_probs=191.1
Q ss_pred HHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHh----hcCcchHHHHHHHHHHhCCCcHHHHHHHHHcccCHHHHHHHHH
Q 040951 162 EELAKEEAAARKLITKGCNMCPKNEDVWLEACR----LARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLR 237 (701)
Q Consensus 162 ~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~----l~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~~~~~a~~~l~ 237 (701)
.+..|++++|...+......-++...+.-..++ |+..++|..++...|..||++...+..+.....-..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~------- 86 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL------- 86 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc-------
Confidence 344578888888887777666666555444443 355667777777777777777665544433220000
Q ss_pred HHHHhcCCCHHHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhc---cChH-HHHHHHHHHHHhCCCCHHHHHHH
Q 040951 238 MALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVELWLALARL---ETYG-VARSVLNKARKKLPKERAIWIAA 313 (701)
Q Consensus 238 kal~~~P~~~~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l---~~~~-~A~~~l~~a~~~~p~~~~~~~~~ 313 (701)
.. .-++.+.-..+|....+..|.+......-... +++. .+..++...+... -|.+...+
T Consensus 87 ---~~------------~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~~l 149 (517)
T PF12569_consen 87 ---QL------------SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG--VPSLFSNL 149 (517)
T ss_pred ---cc------------ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC--CchHHHHH
Confidence 00 00123444555555555566543322211111 1222 2333444444332 23344444
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHhhcCc----------ccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHH
Q 040951 314 AKLEEANGNTSMVGKIIERGIRALQGEE----------VVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHAC 383 (701)
Q Consensus 314 a~~~~~~g~~~~a~~~~~~a~~~~~~~~----------~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al 383 (701)
-.+|....+......++...+..+..++ ..+....|..+- .|..|...|++++|+.++++++
T Consensus 150 k~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~--------lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 150 KPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF--------LAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred HHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH--------HHHHHHHhCCHHHHHHHHHHHH
Confidence 4455433334444455555544432221 123344565442 2334588999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCC----
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI--PNS---- 457 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~--p~~---- 457 (701)
...|+.++.+...|.++...|++.+|...++.+-..++.+-.+-...++.+.+.|++++|...+......+ |..
T Consensus 222 ~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 222 EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887655 221
Q ss_pred -HHHHH--HHHHHHHHcCcHHHHHHHHHHHHhcC
Q 040951 458 -EEIWL--AAFKLEFENRELERARMLLAKARDMG 488 (701)
Q Consensus 458 -~~~~~--~la~~~~~~~~~~~A~~~~~~a~~~~ 488 (701)
..+|+ ..|..+.+.|++..|++.|..+.+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 12565 58899999999999999999888754
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.8e-11 Score=111.04 Aligned_cols=206 Identities=16% Similarity=0.110 Sum_probs=151.4
Q ss_pred cCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 320 NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQL 399 (701)
Q Consensus 320 ~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 399 (701)
..+.++..++....+...+.. ....+.|.-+-+.+ -.....|..+-|..++...-..+|++..+-...|..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~-------IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVF-------IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHH-------HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 345666666666665543332 22245566554433 223667788888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH
Q 040951 400 EKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARM 479 (701)
Q Consensus 400 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 479 (701)
+...|++++|+++|+..++.+|.+..++....-+...+|..-+|++.+...++.++++.++|..++.+|...|+|++|.-
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 88888888888888888888888888777777777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHhC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 480 LLAKARDMGGT-ERVWMKSAIVERELG---NNAEERGFIEEGLKRFPSFFNLWLMLGQL 534 (701)
Q Consensus 480 ~~~~a~~~~p~-~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 534 (701)
++++++-..|. +..+..++.+++..| ++.-|+++|.++++.+|.+...++.+-.+
T Consensus 176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 88888888887 777777777766555 45567778888888887666665555444
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.48 E-value=7.1e-12 Score=138.54 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=199.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC----CHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 040951 409 LIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI-PN----SEEIWLAAFKLEFENRELERARMLLAK 483 (701)
Q Consensus 409 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~-p~----~~~~~~~la~~~~~~~~~~~A~~~~~~ 483 (701)
..+-|++.+..+|+....|..|...+...++.++|+++.++|+... +. -..+|.++.+++..-|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3456888888999999999999999999999999999999999764 33 234899999999999989999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC--CHHH
Q 040951 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN--CIPL 561 (701)
Q Consensus 484 a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 561 (701)
|.+.+..-.++..+..+|...+.+++|.++|+.+++.+.+....|..++..+.++++-++|+.++.++++.-|. +..+
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 99988778899999999999999999999999999999988999999999999999999999999999999998 7888
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 562 WYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 562 ~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
....|.++.+ .|+.++++.+|+-.+...|+-.++|.-|++.+.++|+.+.++.+|++++.+.
T Consensus 1603 IskfAqLEFk---~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1603 ISKFAQLEFK---YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHhh---cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999 9999999999999999999999999999999999999999999999999875
No 103
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.46 E-value=2.5e-09 Score=105.64 Aligned_cols=447 Identities=15% Similarity=0.136 Sum_probs=267.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHh--hcCc--chHHHHHHHHHHhCCCcHHHHHHHHHcccCHH-
Q 040951 156 IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACR--LARP--DEAKGVVAKGVRQIPKSVRLWLQAAELDHDKA- 230 (701)
Q Consensus 156 i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~--l~~~--~~A~~~l~~al~~~P~~~~lw~~~~~le~~~~- 230 (701)
.+.+.-.+..|.+++-++.+++.....|--+.+|..++. |... .....+|.+.|...- ++.+|..+.++-....
T Consensus 46 fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~ 124 (660)
T COG5107 46 FQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNN 124 (660)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCc
Confidence 445555666789999999999999999999999988875 4333 366778888887544 3889988877544211
Q ss_pred ----HHHHHHHHHH-------HhcCCCHHHHHHHHhhc-------------CHHHHHHHHHHHHHHCCCCH-HHHHHHHh
Q 040951 231 ----NKSRVLRMAL-------DEIPDSVRLWKALVEIS-------------SEEEARILLHRAVECCPLDV-ELWLALAR 285 (701)
Q Consensus 231 ----~a~~~l~kal-------~~~P~~~~l~~~~~~l~-------------~~~~A~~~l~~a~~~~P~~~-~l~~~l~~ 285 (701)
+++..+-+|. -+.|.+...|..++.+- ..+..+..|.+++..--.+. .+|..+-.
T Consensus 125 ~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~ 204 (660)
T COG5107 125 LITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYEN 204 (660)
T ss_pred ccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 3444333333 35788999999887542 56777888888885433443 57766554
Q ss_pred ccChHHHHHHHHHH--HHhCCCCHHHHHHHHHHHHHcCChhHHHHHHH----HHHHHhhcCcccCCHHHHHHHHHHHHHc
Q 040951 286 LETYGVARSVLNKA--RKKLPKERAIWIAAAKLEEANGNTSMVGKIIE----RGIRALQGEEVVIDRDTWMKEAEIAEKA 359 (701)
Q Consensus 286 l~~~~~A~~~l~~a--~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~----~a~~~~~~~~~~~~~~~w~~~a~~~e~~ 359 (701)
.+. -++++ .+.......++...-..+....+......+.. +-....+. .....|+....+....
T Consensus 205 fE~------e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r----~s~S~WlNwIkwE~en 274 (660)
T COG5107 205 FEL------ELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR----TSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHH------HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----cccchhhhHhhHhhcC
Confidence 431 11111 11111111122222222222111111111111 10000111 1234476666655333
Q ss_pred CCcHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 040951 360 GSDAEECKKRGSIE-TARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438 (701)
Q Consensus 360 ~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g 438 (701)
|-+ ...+-.. .---+|++++...|-.+++|+.+.......++-+.|....++++..+|. +...++.++...+
T Consensus 275 ~l~----L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~n 347 (660)
T COG5107 275 GLK----LGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVN 347 (660)
T ss_pred Ccc----cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcc
Confidence 310 1122222 2334688999999999999999999999999999999998888877775 7788888888888
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHH
Q 040951 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFE---NRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIE 515 (701)
Q Consensus 439 ~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~ 515 (701)
+.+....+|+++.+.-.. -+..+..... .|+++...+++-+-+. .-.-+|..+...-.+..-.+.|+.+|.
T Consensus 348 d~e~v~~~fdk~~q~L~r----~ys~~~s~~~s~~D~N~e~~~Ell~kr~~--k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 348 DEEAVYGCFDKCTQDLKR----KYSMGESESASKVDNNFEYSKELLLKRIN--KLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred cHHHHhhhHHHHHHHHHH----HHhhhhhhhhccccCCccccHHHHHHHHh--hhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888777643110 0000110000 1223222222222111 113344444444455555677777777
Q ss_pred HHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC
Q 040951 516 EGLKRFPSFFNLWLMLGQL-EERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 594 (701)
++-+..--.+.++..-|.+ +...|++.-|-.+|+-++..+|+++.....+-.++.. .++-+.|+.+|++++..-.+
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~---inde~naraLFetsv~r~~~ 498 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR---INDEENARALFETSVERLEK 498 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH---hCcHHHHHHHHHHhHHHHHH
Confidence 7665543344555555554 3456777777777777777777777776777777777 77777777777777665444
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 595 N--PEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 595 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
. ..+|-.+...+..-|+...+..+-++.....|..
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 3 4677777777777777777777777777776654
No 104
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.6e-09 Score=108.84 Aligned_cols=393 Identities=17% Similarity=0.166 Sum_probs=235.9
Q ss_pred hcHHHHHHHHHHHhhhCCCCHHHHHHHHhhc-----CcchHHHHHHHHHHhCCCcHHHHHHHHHcccCHHHHHHHHHHHH
Q 040951 166 KEEAAARKLITKGCNMCPKNEDVWLEACRLA-----RPDEAKGVVAKGVRQIPKSVRLWLQAAELDHDKANKSRVLRMAL 240 (701)
Q Consensus 166 g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~-----~~~~A~~~l~~al~~~P~~~~lw~~~~~le~~~~~a~~~l~kal 240 (701)
+.+..-.+++.++|..+|+++++|+-++..+ ..+.|+.++.++|+.||+++.+|..+.+++..+..+...-++.+
T Consensus 119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~ 198 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREEL 198 (568)
T ss_pred cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578889999999999999999999998764 25689999999999999999999999999998888888888888
Q ss_pred HhcCCCHH--------HHHHHHhhc--------CH--------HHH----HHHHHHHHHHCCCCHHHHHHHHhccChHHH
Q 040951 241 DEIPDSVR--------LWKALVEIS--------SE--------EEA----RILLHRAVECCPLDVELWLALARLETYGVA 292 (701)
Q Consensus 241 ~~~P~~~~--------l~~~~~~l~--------~~--------~~A----~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A 292 (701)
..+-.+.. .|..+.... .. +.. ..++.-.....|.++.+|-.++
T Consensus 199 g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~la-------- 270 (568)
T KOG2396|consen 199 GLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLA-------- 270 (568)
T ss_pred ccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHH--------
Confidence 87776652 122211100 00 000 1111112233566666665544
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcC-C
Q 040951 293 RSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRG-S 371 (701)
Q Consensus 293 ~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~-~ 371 (701)
...++-..+.+-.+ ......-.+---+-+....+|+.++..++. ..-|-.+..+|. ...-...| .
T Consensus 271 qr~l~i~~~tdl~~---~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t------~sm~e~YI~~~l-----E~~~~~r~~~ 336 (568)
T KOG2396|consen 271 QRELEILSQTDLQH---TDNQAKAVEVGSKESRCCAVYEEAVKTLPT------ESMWECYITFCL-----ERFTFLRGKR 336 (568)
T ss_pred HHHHHHHHHhhccc---hhhhhhchhcchhHHHHHHHHHHHHHHhhH------HHHHHHHHHHHH-----HHHHhhhhhH
Confidence 33333333322111 111111122222234556788888876554 345655555541 11112222 3
Q ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHc-CChHHHHHH
Q 040951 372 IETARAIFSHACTVF---LTKKSIWLKAAQLEKTHGSRESLIALLRKAV-TYFPQAEVLWLMGAKEKWLA-GDVPAARDI 446 (701)
Q Consensus 372 ~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~ 446 (701)
...-..+|+.+.... |....-+..+..++.... ++.....+.. ....++...|.......... .|++--...
T Consensus 337 I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~---~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~ 413 (568)
T KOG2396|consen 337 ILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLN---EAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEE 413 (568)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccc---hHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHH
Confidence 444555566665543 444444444444444333 3333333332 23445677777776666532 233222222
Q ss_pred HHHHHHhCCCCHH--HHHHHHHHHHHcCc-HHHH-HHH-HHHHHhc-CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 040951 447 LQEAYATIPNSEE--IWLAAFKLEFENRE-LERA-RML-LAKARDM-GGT-ERVWMKSAIVERELGNNAEERGFIEEGLK 519 (701)
Q Consensus 447 l~~a~~~~p~~~~--~~~~la~~~~~~~~-~~~A-~~~-~~~a~~~-~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 519 (701)
+--.++..+.+.. .|.... .++ .... ..+ +..+... .|+ ...-..+..++.+.|-+.+|+..|.+...
T Consensus 414 l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 414 LFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 2223333333222 233222 222 2111 112 2222222 233 44555667778888999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 520 RFPSFFNLWLMLGQLEER--LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
.-|-+..++....++... .-+..-++.+|+.++.....++.+|..+-..+.. .|..+.+-.+|.+|++.
T Consensus 489 lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~---~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 489 LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELP---LGRPENCGQIYWRAMKT 559 (568)
T ss_pred CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhcc---CCCcccccHHHHHHHHh
Confidence 988888888888888543 2348889999999999888999999999999999 99999999999888864
No 105
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.45 E-value=2.5e-09 Score=110.59 Aligned_cols=392 Identities=15% Similarity=0.159 Sum_probs=231.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChhHHHHHHHH
Q 040951 258 SEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLPKERAIWIAAAKLEEA-NGNTSMVGKIIER 332 (701)
Q Consensus 258 ~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~-~g~~~~a~~~~~~ 332 (701)
+.+.++..+...+...|.....|..++.. |..+++.++|++++...|.+.+.|+.+...... .|+.......|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44555666666666777777777766643 566777777777777777777777776655443 3555566677777
Q ss_pred HHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCH
Q 040951 333 GIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTH------GSR 406 (701)
Q Consensus 333 a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~ 406 (701)
|......+- .....|-.+.++. ..+++......+|++.++.--.....++..-.-..+. ...
T Consensus 140 A~~~vG~dF--~S~~lWdkyie~e----------n~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~ 207 (577)
T KOG1258|consen 140 AKSYVGLDF--LSDPLWDKYIEFE----------NGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSI 207 (577)
T ss_pred HHHhcccch--hccHHHHHHHHHH----------hccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCH
Confidence 766544432 2345676666555 5666667777777776654222222111111111111 111
Q ss_pred HHHHHHHHHHHHh--CCC---cHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Q 040951 407 ESLIALLRKAVTY--FPQ---AEVLWLMGAKEK-WLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML 480 (701)
Q Consensus 407 ~~A~~~~~~al~~--~p~---~~~~~~~~a~~~-~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 480 (701)
+++...-...... .+. ..+.+-..+... ...+..+.+...+.+. ....-.++.........+-.
T Consensus 208 d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 208 DELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------VSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred HHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH----------HHHHHHHHHhhHhHHHHHHh
Confidence 1111111111100 000 000000000000 0001111111111111 11112233334445556666
Q ss_pred HHHHHhcC-----CC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 481 LAKARDMG-----GT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 481 ~~~a~~~~-----p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
|+..+... |. -..|..+..+....|+++...-.|++++--+.....+|..++......|+.+-|..++..+
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 66666522 22 5678888999999999999999999999998889999999999999999999999999988
Q ss_pred hhh-CCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHhCC
Q 040951 552 CNQ-CPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADS---FIAKALQKCP 627 (701)
Q Consensus 552 l~~-~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~al~~~p 627 (701)
.+. .|..+.+.+..+.+... .|++..|+.++++.....|....+-...+.++.+.|+.+.+.. ++.....-.-
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~---~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~ 434 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEES---NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE 434 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHh---hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc
Confidence 875 57778889999999999 9999999999999999889888888888889999999988884 3333322222
Q ss_pred CCH---HHHHHHHhcCC---C--ccchhHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 040951 628 NSG---ILWAELIKMVP---H--HDRKSKGKDALVKSDRDPHVFAAVAKLFWHDR 674 (701)
Q Consensus 628 ~~~---~l~~~~~~~~~---~--~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g 674 (701)
+.+ .++..++++.. + ......+.+++...|++-..+..+..+....+
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 222 23333333221 1 22233455666666777666766666665443
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=3.9e-12 Score=113.15 Aligned_cols=121 Identities=11% Similarity=-0.060 Sum_probs=66.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCH
Q 040951 480 LLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCI 559 (701)
Q Consensus 480 ~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 559 (701)
+|+++++..|+. +..+|..+...|++++|+..|.+++..+|.+..+|..+|.++...|++++|+..|++++..+|+++
T Consensus 15 ~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 15 ILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 444444444432 333455555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 560 PLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 560 ~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
..++.+|.++.. .|++++|+..|++++...|+++..|...+.+
T Consensus 93 ~a~~~lg~~l~~---~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 93 EPVYQTGVCLKM---MGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555555555 5555555555555555555555555544443
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.43 E-value=1.5e-11 Score=115.50 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=106.5
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 040951 464 AFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 543 (701)
.+.+|...|+++......++... |.. -+...++.++++..+++++..+|++...|..+|.++...|++++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~--~~~--------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD--PLH--------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC--ccc--------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44566777777765444322211 110 00124566777777777888888888888888888888888888
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHH-hhhccCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 544 AKEAYQSGCNQCPNCIPLWYSLANLE-EKRNGLNG--LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 544 A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
|...|+++++..|+++.++..+|.++ .. .|+ .++|+..++++++.+|+++.++..+|..+...|++++|+..++
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~---~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQ---AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888877777777754 45 565 4778888888888888777777888877777888888888888
Q ss_pred HHHHhCCC
Q 040951 621 KALQKCPN 628 (701)
Q Consensus 621 ~al~~~p~ 628 (701)
++++..|.
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 87777774
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.43 E-value=1.6e-11 Score=115.39 Aligned_cols=153 Identities=12% Similarity=-0.043 Sum_probs=131.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH
Q 040951 430 GAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNA 508 (701)
Q Consensus 430 ~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~ 508 (701)
-+-.|...|+++......++.. +|.. -+...++.++++..+++++...|+ ...|..+|.++...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456778999888655543221 1211 111367889999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHH
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQL-EERLGH--LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVL 585 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~ 585 (701)
.|+..|++++...|+++.++..+|.+ +...|+ +++|+..++++++.+|+++.++..+|..+.. .|++++|+..+
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~---~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM---QADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---cCCHHHHHHHH
Confidence 99999999999999999999999997 467787 5999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCH
Q 040951 586 SVARLKNPLNP 596 (701)
Q Consensus 586 ~~a~~~~p~~~ 596 (701)
+++++..|.+.
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 99999998664
No 109
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.42 E-value=3.3e-09 Score=104.86 Aligned_cols=421 Identities=11% Similarity=0.100 Sum_probs=256.4
Q ss_pred HHHHHHHhCCCcHHHHHHHHHccc---CHHHHHHHHHHHHHhcCCCHHHHHHHHhhc----CHHHHHHHHHHHHHHCCCC
Q 040951 204 VVAKGVRQIPKSVRLWLQAAELDH---DKANKSRVLRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLD 276 (701)
Q Consensus 204 ~l~~al~~~P~~~~lw~~~~~le~---~~~~a~~~l~kal~~~P~~~~l~~~~~~l~----~~~~A~~~l~~a~~~~P~~ 276 (701)
-++.-|+.||.+..-|..+++... ..++-++++++...-.|--+..|..++.-+ ++.....+|.+++...- +
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-N 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-c
Confidence 566677788888877777776443 556667778888777787777888777654 77777777777775543 3
Q ss_pred HHHHHHHHhc---------cC-hHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHH
Q 040951 277 VELWLALARL---------ET-YGVARSVLNKAR---KKLPKERAIWIAAAKLEEA---------NGNTSMVGKIIERGI 334 (701)
Q Consensus 277 ~~l~~~l~~l---------~~-~~~A~~~l~~a~---~~~p~~~~~~~~~a~~~~~---------~g~~~~a~~~~~~a~ 334 (701)
.++|..++.. |+ -....+.|+-.+ -..|.+...|..++.+.+. +.+.+..+..|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 6777665542 11 111122222222 2447777777777766543 223557777788887
Q ss_pred HHhhcCcccCCHHHHHHHHHHHHHcCC-cHHHH--HhcCCHHHHHHHHHHHHHh-------CCC-----------CHHHH
Q 040951 335 RALQGEEVVIDRDTWMKEAEIAEKAGS-DAEEC--KKRGSIETARAIFSHACTV-------FLT-----------KKSIW 393 (701)
Q Consensus 335 ~~~~~~~~~~~~~~w~~~a~~~e~~~~-~a~~~--~~~~~~~~A~~~~~~al~~-------~p~-----------~~~~~ 393 (701)
..--.+ -...|..+-.+....+. -|.-+ ...--|-.|++.|++.... +|. ..+-|
T Consensus 189 ~tP~~n----leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 189 QTPMGN----LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred cCcccc----HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 632221 13445554433211111 11111 1222345666666665433 221 12347
Q ss_pred HHHHHHHHHcC------CHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 394 LKAAQLEKTHG------SRE-SLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFK 466 (701)
Q Consensus 394 ~~la~~~~~~g------~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~ 466 (701)
+.++..+...| -.. ..--++++++...|-.+.+|+.+...+...+|-+.|+...++++..+|. +.+.++.
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse 341 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSE 341 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHH
Confidence 77777776543 222 2334567788888888888888888888888888888888877766665 6667778
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHH--HH---HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 040951 467 LEFENRELERARMLLAKARDMGGTERVWMKSAIV--ER---ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHL 541 (701)
Q Consensus 467 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~--~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 541 (701)
+|...++-+....+|++++..- ...+... .. .-|+++...+++-+-.. .-.-+|..+...-.+..-.
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L-----~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDL-----KRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHH-----HHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhH
Confidence 8877888888888887776421 0111110 00 12333222222221111 1233444444555566778
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 542 KEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 542 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
+.|+.+|-++-+..-....+++.-|.++.. ..|++.-|..+|+-.+...|+++..-..+..++...++-..|+.+|++
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~--~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYY--ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHH--hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 899999999866442333444444433332 168999999999999999999998888888899999999999999998
Q ss_pred HHHhCCCC--HHHHHHHHhcCCC
Q 040951 622 ALQKCPNS--GILWAELIKMVPH 642 (701)
Q Consensus 622 al~~~p~~--~~l~~~~~~~~~~ 642 (701)
++..-.+. ..+|...+..+..
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~ 514 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESM 514 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHh
Confidence 88765544 3455555554443
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.42 E-value=4.9e-12 Score=112.51 Aligned_cols=119 Identities=14% Similarity=-0.008 Sum_probs=111.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 511 RGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 511 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
..+|+++++.+|++ +..+|..+...|++++|...|++++..+|.+..+|..+|.++.. .|++++|+..|++++.
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM---LKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---HhhHHHHHHHHHHHHh
Confidence 46789999999985 66789999999999999999999999999999999999999999 9999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 591 KNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 591 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
.+|+++..|..+|.++...|++++|+..|.+++..+|+++..|..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999999999999999999997665544
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.40 E-value=1.8e-10 Score=127.76 Aligned_cols=262 Identities=9% Similarity=-0.058 Sum_probs=173.5
Q ss_pred HCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHH
Q 040951 272 CCPLDVELWLALARL----ETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRD 347 (701)
Q Consensus 272 ~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~ 347 (701)
..|.+..+|..++.. +++++|..+++.+++..|+....|+..|.++.+.+++..+.-+ .++...+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------- 96 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------- 96 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc-------
Confidence 467777888776654 7899999999999999999999999999999999988777655 555544333
Q ss_pred HHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 040951 348 TWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLW 427 (701)
Q Consensus 348 ~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 427 (701)
.++ .++..+...+...|++..+++.+|.+|.+.|+.+++...|+++++.+|+++.+.
T Consensus 97 ----------------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aL 153 (906)
T PRK14720 97 ----------------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIV 153 (906)
T ss_pred ----------------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHH
Confidence 222 344455555566788888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHH-HHHhC
Q 040951 428 LMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIV-ERELG 505 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~-~~~~g 505 (701)
..+|..+... +.++|+..+.+++.. +...+++..+..+..+.+...|. .+.+..+-+. ....|
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 9999988888 899999988888776 44455666666666666666665 2222221111 11111
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhc------------
Q 040951 506 NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRN------------ 573 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------ 573 (701)
+.. -..++.-+-..|...+++++++.+++.+++.+|.+..+...++.+|...+
T Consensus 219 -~~~--------------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 219 -FTR--------------LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred -cch--------------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHH
Confidence 000 12233333334444444555555555555555554444444444443211
Q ss_pred -----cCCCHHHHHHHHHHHHHhCCCC
Q 040951 574 -----GLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 574 -----~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
....+..++..|++.+...|.+
T Consensus 284 s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 284 SDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred hccccCCccHHHHHHHHHHHeeecCCC
Confidence 1245677777777777766554
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.40 E-value=4.5e-11 Score=111.02 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 040951 441 PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLK 519 (701)
Q Consensus 441 ~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 519 (701)
..+...+-..+..+|++..+ ..++..+...|+-+.+..+..++...+|. ..+...++......|++..|+..+.++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 33555666666677777777 77777777777777777777776666665 55666677777778888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 520 RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
..|+++++|..+|-+|.+.|+++.|+..|.+++++.|+++.+..+++..+.- .|+++.|..++..+....+.+..+-
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L---~gd~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL---RGDLEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH---cCCHHHHHHHHHHHHhCCCCchHHH
Confidence 8888888888888888888888888888888888888888888888888887 8888888888888887777777888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
.+++.+....|++..|..+..+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccc
Confidence 8888888888888887776554
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=2.3e-11 Score=127.10 Aligned_cols=284 Identities=16% Similarity=0.140 Sum_probs=218.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 388 TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKL 467 (701)
Q Consensus 388 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~ 467 (701)
.....-..++.++...|-..+|..+|++. ..|-..+.+|...|+..+|..+..+-++ .|+++..|..+|.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 33345568899999999999999999986 5677788899999999999999999999 55567777777776
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040951 468 EFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEA 547 (701)
Q Consensus 468 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 547 (701)
....--+++|.++..... .++.+.++......+++.++...++..+.++|-....|+.+|-+..+.++++.|...
T Consensus 467 ~~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ccChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 655544555554444322 455666666666789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 548 YQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 548 ~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
|..++...|++...|.+++..|.. .|+-.+|...+.+|++-+-++..+|.++..+....|.+++|+..|.+.+...-
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~---~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIR---LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHH---HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999 99999999999999999988999999999999999999999999999887532
Q ss_pred C--CHHHHHHHHh-----cCCCccc---------hhHHHHHHHhcCCChHHHHHHHHHHHhc------CCHHHHHHHHHH
Q 040951 628 N--SGILWAELIK-----MVPHHDR---------KSKGKDALVKSDRDPHVFAAVAKLFWHD------RKVDKARNWFNK 685 (701)
Q Consensus 628 ~--~~~l~~~~~~-----~~~~~~~---------~~~~~~al~~~p~~~~~~~~lg~~~~~~------g~~~~A~~~~~~ 685 (701)
+ ++.+....+. +.....+ +..+-+.+...-++|..+.-.|. ++.. +..++|.....+
T Consensus 619 ~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~-l~~~~~~ek~~~~eka~~~l~k 697 (777)
T KOG1128|consen 619 KYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYAL-LYGNGSSEKLDENEKAYRALSK 697 (777)
T ss_pred hcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhh-hccccchhcccccHHHHhhhhh
Confidence 2 2322222221 1111111 12233344444567888877776 3332 445555555555
Q ss_pred HHHh
Q 040951 686 AVSL 689 (701)
Q Consensus 686 al~~ 689 (701)
....
T Consensus 698 ~~~~ 701 (777)
T KOG1128|consen 698 AYKC 701 (777)
T ss_pred Cccc
Confidence 4443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.36 E-value=1.2e-10 Score=108.11 Aligned_cols=175 Identities=21% Similarity=0.156 Sum_probs=140.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 040951 409 LIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG 488 (701)
Q Consensus 409 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 488 (701)
+...+-+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+..+...+++.....|++..|...+.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555566666777877777 7777778788888888888888777778777777778888888888888888888888887
Q ss_pred CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 040951 489 GT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567 (701)
Q Consensus 489 p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 567 (701)
|+ .++|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|+.++..+...-+.+..+...++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 77 88888888888888888888888888888888888888888888888888888888888887777777788888888
Q ss_pred HHhhhccCCCHHHHHHHHHH
Q 040951 568 LEEKRNGLNGLSKARAVLSV 587 (701)
Q Consensus 568 ~~~~~~~~g~~~~A~~~~~~ 587 (701)
+... .|++..|..+..+
T Consensus 211 ~~~~---~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGL---QGDFREAEDIAVQ 227 (257)
T ss_pred HHhh---cCChHHHHhhccc
Confidence 8888 8888888776654
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.36 E-value=1.3e-10 Score=128.98 Aligned_cols=258 Identities=9% Similarity=-0.004 Sum_probs=161.0
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~ 463 (701)
...|.+..+|..++..+...|++++|..+++.++..+|+...+++..|.++.+.+++..+.-+ .++...+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~------- 95 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ------- 95 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-------
Confidence 345777777888887777777888888888877777777777777777777777776555444 44444433
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951 464 AFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLK 542 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 542 (701)
..++ .+.+.+...+...+. ..+++.+|.+|...|+.++|...|+++++.+|+++.+...+|..|... +++
T Consensus 96 -------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 96 -------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 2223 222233323333333 557777777777777777777777777777777777777777777777 777
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 543 EAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 543 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
+|++++.+++.. +.. .+++..+..+.++.+..+|++.+.+..+-+.....-.+..+..++.-.
T Consensus 167 KA~~m~~KAV~~--------------~i~---~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIK---KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHH--------------HHh---hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 777777777654 333 556777777777777777777766555544333322233344333333
Q ss_pred HHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 623 LQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 623 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
....+ ....-+.....+..+|+..|.|..+...++.+|. ++|.. ...|+.++++
T Consensus 230 ~~~y~----------~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 230 YEPYK----------ALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred HHHHh----------hhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 22222 2222223334556677778877777888887776 33333 4455555544
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=6.5e-09 Score=97.53 Aligned_cols=392 Identities=15% Similarity=0.107 Sum_probs=233.1
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHCCCCHHHH----HHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHH
Q 040951 251 KALVEISSEEEARILLHRAVECCPLDVELW----LALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMV 326 (701)
Q Consensus 251 ~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~----~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a 326 (701)
..+|+-..|++|++++..-.+..|.+.... .++-..++|.+|-.+|++.-...|......+..++...+.+.+..|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 334555589999999999999999875433 3344568999999999999999999888888889999999988888
Q ss_pred HHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 040951 327 GKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSR 406 (701)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 406 (701)
..+...+.+. ... ...-+.+ .+-+..+.+++..++.+.++.-. .+........+.+..+.|++
T Consensus 98 LrV~~~~~D~----~~L--~~~~lqL---------qaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 98 LRVAFLLLDN----PAL--HSRVLQL---------QAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHhcCC----HHH--HHHHHHH---------HHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccH
Confidence 8877766442 100 1111111 11223677888888776655321 14566788888889999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCH------------------------
Q 040951 407 ESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT----IPNSE------------------------ 458 (701)
Q Consensus 407 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~----~p~~~------------------------ 458 (701)
+.|.+-|+.+++...-++.+-+.++.++.+.|+++.|++...+.++. .|.-.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999999998888888999999999999999998877665544 34310
Q ss_pred -HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 459 -EIWLAAFKLEFENRELERARMLLAKARDMGGT---ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQL 534 (701)
Q Consensus 459 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 534 (701)
+++...+-++.+.++++.|.+.+..+--.... |-....++.. -..+++.....-+.-.+..+|-.+..+.++-.+
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLL 319 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHH
Confidence 02223444556666666666554332111111 3333333322 123455555555666666666555666666666
Q ss_pred HHHcCCHHHHHHHHHHHhhhCCCCH-----HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Q 040951 535 EERLGHLKEAKEAYQSGCNQCPNCI-----PLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAES-K 608 (701)
Q Consensus 535 ~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-~ 608 (701)
|.+..-++-|..++.. +|+.. +..+.+...+... .-..++|.+-++..-...-+ .+....+.+.. +
T Consensus 320 yCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~--qT~pEea~KKL~~La~~l~~--kLRklAi~vQe~r 391 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITC--QTAPEEAFKKLDGLAGMLTE--KLRKLAIQVQEAR 391 (459)
T ss_pred HhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 6666666665555433 33321 1111222211110 23334443333332111100 00011111111 0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 609 HGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 609 ~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 688 (701)
..+-+ ..++.+++.. .+++++. --++...++++|...+|.-+.+.|.+.++
T Consensus 392 ~~~dd---~a~R~ai~~Y-----------------------d~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 392 HNRDD---EAIRKAVNEY-----------------------DETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred hcccH---HHHHHHHHHH-----------------------HHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11100 1111111111 1122221 34778899999999999999999999999
Q ss_pred hCCCCccccc
Q 040951 689 LDPDTGDFWA 698 (701)
Q Consensus 689 ~~p~~~d~w~ 698 (701)
...+ .++|.
T Consensus 443 fC~e-hd~Wk 451 (459)
T KOG4340|consen 443 FCND-HDVWK 451 (459)
T ss_pred hhcc-cceee
Confidence 8876 56774
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=5.7e-09 Score=123.65 Aligned_cols=302 Identities=16% Similarity=0.103 Sum_probs=221.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLT-----K----KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE-----VLWLMGAK 432 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~-----~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~ 432 (701)
...|++++|...+..+....+. . ..+...++.++...|+++.|...+++++...|... .....++.
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 6789999999999988765332 1 12334556777889999999999999998655432 24566778
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC-----C----HHHHHHH
Q 040951 433 EKWLAGDVPAARDILQEAYATIPN----S--EEIWLAAFKLEFENRELERARMLLAKARDMGG-----T----ERVWMKS 497 (701)
Q Consensus 433 ~~~~~g~~~~A~~~l~~a~~~~p~----~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p-----~----~~~~~~~ 497 (701)
++...|++++|...+++++..... . ......++.++...|+++.|...+++++.... . ..++..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 888899999999999999876432 1 12445678889999999999999999887421 1 2334566
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHH----HH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPS-----FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWY----SL 565 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~----~l 565 (701)
+.++...|++++|...+.+++..... ....+..++.++...|++++|...+.++....+.. ..... ..
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 88888899999999999998876432 24456668889999999999999999987653322 11111 12
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 040951 566 ANLEEKRNGLNGLSKARAVLSVARLKNPLNP----EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641 (701)
Q Consensus 566 a~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~ 641 (701)
...+.. .|+.+.|..++.......+... ..+..++.++...|++++|...+++++......+..
T Consensus 660 ~~~~~~---~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~--------- 727 (903)
T PRK04841 660 LIYWQM---TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLM--------- 727 (903)
T ss_pred HHHHHH---CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCch---------
Confidence 234455 7899999999877654332222 225678889999999999999999998864321110
Q ss_pred CccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 642 HHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 642 ~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
.....++..+|.++...|+.++|...+.+|+++....+-
T Consensus 728 ---------------~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 728 ---------------SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred ---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 112557788999999999999999999999998876654
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.32 E-value=3.6e-10 Score=124.83 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=80.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~ 463 (701)
..+|.+.+++..++.+..+.|.+++|..+++.+++.+|++..++..++.++.+.+.+++|+..+++++...|++......
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 464 AFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
++.++...|++++|..+|++++...|+ +.+++.+|..+...|+.++|...|++++...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 555555555555555555555555544 5555555555555555555555555555554
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=4.6e-10 Score=117.55 Aligned_cols=259 Identities=14% Similarity=0.122 Sum_probs=209.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~ 442 (701)
++.+...|-...|..+|++. ..|-..+.+|...|+..+|..+..+-++ .|.++.+|..+|.+.....-+++
T Consensus 405 aell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHH
Confidence 46679999999999999874 5788999999999999999999999988 67788888888877655544555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
|.++.+.. +..+...++......++|+++.+.++..++++|- ...|+.+|.+..+.+++..|.+.|..++...
T Consensus 476 awElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 476 AWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 55555433 3445666777777789999999999999999998 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC--CCHHHH
Q 040951 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP--LNPEIW 599 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~ 599 (701)
|++...|.+++..|...++..+|...++++++.+-.+..+|.++..+... .|.++.|++.+.+.+.... .++.+.
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd---vge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD---VGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh---cccHHHHHHHHHHHHHhhhhcccchhh
Confidence 99999999999999999999999999999999998899999999999999 9999999999999887642 234444
Q ss_pred HHHHHHHHh--c---CCHHHH-----HHHHHHHHHhCCCCHHHHHHHHhc
Q 040951 600 LATIRAESK--H---GNKKEA-----DSFIAKALQKCPNSGILWAELIKM 639 (701)
Q Consensus 600 ~~l~~~~~~--~---g~~~~A-----~~~~~~al~~~p~~~~l~~~~~~~ 639 (701)
..++....+ . ++-..+ .+.+-+.+...-+++..|.-++.+
T Consensus 627 ~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~l 676 (777)
T KOG1128|consen 627 LIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYALL 676 (777)
T ss_pred HHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhhh
Confidence 444333222 1 221111 134555555566678788777753
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=4.4e-11 Score=106.04 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=60.5
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 547 AYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 547 ~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
.|++++...|++......++..+.. .|++++|...|++++..+|.++.+|..++.++...|++++|...+++++...
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQ---QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHH---cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555555555555555 5555555555555555555555555555555555555555555555555444
Q ss_pred CCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 627 PNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 627 p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
|+ ++.+++.+|.++...|++++|..+|+++++.+|++..
T Consensus 82 p~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PD------------------------------DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CC------------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 43 2444555555555555555555555555555555444
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=3.4e-10 Score=125.07 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
..+++.+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++...|++......+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
+ .|++++|...|++++..+|+++.+|..+|.++...|+.++|...|++++....+
T Consensus 166 ~---~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 166 E---IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred H---hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 5 555555555555555555555555555555555555555555555555554433
No 122
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=2e-08 Score=96.52 Aligned_cols=373 Identities=11% Similarity=-0.041 Sum_probs=207.4
Q ss_pred HHhccChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCC
Q 040951 283 LARLETYGVARSVLNKARKKLPKER-AIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGS 361 (701)
Q Consensus 283 l~~l~~~~~A~~~l~~a~~~~p~~~-~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~ 361 (701)
++.-.+|+.|+..++-.+....... .+-..+|.++...|++++|...|+-+..... .....|+.++...
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-----~~~el~vnLAcc~----- 101 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-----APAELGVNLACCK----- 101 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-----CCcccchhHHHHH-----
Confidence 3444688999999988876554322 3333446677888999999999998876321 1256677776544
Q ss_pred cHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 040951 362 DAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVP 441 (701)
Q Consensus 362 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~ 441 (701)
.-.|.|.+|.++-.++ |.++--...+..+..+.|+-.+-.. |...++. ..+-.+.+|.+....-.+.
T Consensus 102 -----FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~-fh~~LqD---~~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 102 -----FYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILT-FHSSLQD---TLEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred -----HHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHH-HHHHHhh---hHHHHHhHHHHHHHHHHHH
Confidence 7788899888776554 6666555555555566666544433 3333322 2234566777777777889
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH--hCChHH---------
Q 040951 442 AARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERE--LGNNAE--------- 509 (701)
Q Consensus 442 ~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~--~g~~~~--------- 509 (701)
+|+++|.+.+..+|+...+-..++.+|.+..-++-+.+++.-.+...|+ +-+....+...++ .|+..+
T Consensus 169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 9999999999999987777778888999999999999999998988888 3333222322222 232221
Q ss_pred -------HHHHHH----------HHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 040951 510 -------ERGFIE----------EGLKRFPS----FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANL 568 (701)
Q Consensus 510 -------A~~~~~----------~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 568 (701)
+..++. -+++.-|. -|++...++..|..+++..+|..+.+.. .|..|.-++.-|.+
T Consensus 249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv 325 (557)
T KOG3785|consen 249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVV 325 (557)
T ss_pred ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHH
Confidence 111111 12222222 1345555555666666666666655543 56665555555555
Q ss_pred HhhhccCCCHHHHHHHHHHHHH---hCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhc
Q 040951 569 EEKRNGLNGLSKARAVLSVARL---KNPLN------PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKM 639 (701)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~a~~---~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~ 639 (701)
... .|+-...++.+.-|.+ ....+ ......++.+..-..++++.+.++...-...-++.....+++..
T Consensus 326 ~aa---lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 326 FAA---LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQA 402 (557)
T ss_pred HHH---hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHH
Confidence 555 4443333333332221 11111 11222233333334455555555554444444443333333322
Q ss_pred CCCccchhHHHHHHHhc-----CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 640 VPHHDRKSKGKDALVKS-----DRDPHVFAAVAKLFWHDRKVDKARNWFN 684 (701)
Q Consensus 640 ~~~~~~~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 684 (701)
....+.....++++-.. .++......++++|.+.|+..-|-..|-
T Consensus 403 k~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 22222222222222211 1223344456667777776666665543
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.27 E-value=9.9e-11 Score=103.77 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=87.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC
Q 040951 513 FIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 513 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
.|++++...|++....+.+|..+...|++++|...+++++..+|.++.+|..++.++.. .|++++|..+|++++..+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM---LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Confidence 46677777777777777777777777777777777777777777777777777777777 777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 040951 593 PLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 593 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 631 (701)
|+++..+..+|.++...|++++|...++++++.+|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 777777777777777777777777777777777776543
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=1.8e-10 Score=114.45 Aligned_cols=255 Identities=16% Similarity=0.083 Sum_probs=187.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 366 CKKRGSIETARAIFSHACTVFLT-KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
++-.|+|..++.-++ .....|. .........+.+...|+++.++.-+.. ..+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence 367899999987666 2233332 344666778888899988766544432 22333455566777665555666777
Q ss_pred HHHHHHHHhC-C-CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 445 DILQEAYATI-P-NSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 445 ~~l~~a~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
..++..+... + .++.+.+..+.++...|+++.|++++.+. .+.+......+++...++++.|.+.++.+-+.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7666555333 2 24455566778888899999999888754 4467777788899999999999999999988877
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 523 SFFNLWLMLGQLEERLG--HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 523 ~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
++.-+.+.-+.+....| .+.+|..+|+.....+|.++.+...++.+... .|++++|.+.+++++..+|++++++.
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~---~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ---LGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH---CT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 76655555666665555 58999999999988888999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHH
Q 040951 601 ATIRAESKHGNK-KEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 601 ~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 631 (701)
+++.+....|+. +.+.+++.+....+|+++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999988 6677888888888998753
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.23 E-value=5.4e-08 Score=115.43 Aligned_cols=334 Identities=14% Similarity=0.076 Sum_probs=235.0
Q ss_pred cChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcc--cCCHHHHHHHHHHHHHcCCcH
Q 040951 287 ETYGVARSVLNKARK-KLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEV--VIDRDTWMKEAEIAEKAGSDA 363 (701)
Q Consensus 287 ~~~~~A~~~l~~a~~-~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~--~~~~~~w~~~a~~~e~~~~~a 363 (701)
|.++.+...+..+-. ....++......+.+....|+++++...+..+....+.... ........... .+
T Consensus 388 g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--------~a 459 (903)
T PRK04841 388 GELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNAL--------RA 459 (903)
T ss_pred CChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHH--------HH
Confidence 556655555544311 11223445567778888899999999999988776543210 00111111111 12
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----c--HHHHHHHHH
Q 040951 364 EECKKRGSIETARAIFSHACTVFLTKK-----SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQ----A--EVLWLMGAK 432 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~~a~ 432 (701)
..+...|+++.|...++.++...|... .++..++.++...|++++|...+++++..... . ...+..++.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345789999999999999998655432 24566778888999999999999999875332 1 234566788
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC----C--HHHHHHHH
Q 040951 433 EKWLAGDVPAARDILQEAYATIPN--------SEEIWLAAFKLEFENRELERARMLLAKARDMGG----T--ERVWMKSA 498 (701)
Q Consensus 433 ~~~~~g~~~~A~~~l~~a~~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p----~--~~~~~~~a 498 (701)
++...|++++|...+++++..... ...++..++.++...|++++|...+.+++.... . ...+..++
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 889999999999999998875321 122344678888899999999999999887532 2 44556678
Q ss_pred HHHHHhCChHHHHHHHHHHHHhCCCC---HHHHH----HHHHHHHHcCCHHHHHHHHHHHhhhCCCCH----HHHHHHHH
Q 040951 499 IVERELGNNAEERGFIEEGLKRFPSF---FNLWL----MLGQLEERLGHLKEAKEAYQSGCNQCPNCI----PLWYSLAN 567 (701)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~ 567 (701)
.++...|+++.|...+.++....+.. ..... .....+...|+.+.|...+.......+... ..+..++.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 88999999999999999997764332 11111 122344568999999999877655332222 22567888
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 040951 568 LEEKRNGLNGLSKARAVLSVARLKNP------LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 568 ~~~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 631 (701)
++.. .|++++|...+++++.... ....++..++..+...|+.++|...+.++++.....+.
T Consensus 700 ~~~~---~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 700 AQIL---LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 8889 9999999999999987532 22357788899999999999999999999998876553
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=5.3e-09 Score=105.46 Aligned_cols=159 Identities=23% Similarity=0.133 Sum_probs=139.7
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 040951 421 PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAI 499 (701)
Q Consensus 421 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~ 499 (701)
|....+++..+..+...|+++.|+..+...+...|+|+..+...+.++.+.|+..+|.+.+++++...|+ +-+++.+|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 7778889999999999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred HHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHH
Q 040951 500 VERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLS 579 (701)
Q Consensus 500 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~ 579 (701)
.+...|++.+|+..++..+..+|+++..|..+++.|..+|+..++...+.+. +.. .|+++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------~~~---~G~~~ 442 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG-----------------YAL---AGRLE 442 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------HHh---CCCHH
Confidence 9999999999999999999999999999999999999999888776655443 445 88999
Q ss_pred HHHHHHHHHHHhCCCCHHHH
Q 040951 580 KARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 580 ~A~~~~~~a~~~~p~~~~~~ 599 (701)
.|+..+.++.+....+...|
T Consensus 443 ~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 443 QAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHHHHHHHHHHhccCCcHHH
Confidence 99999999988874433333
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=6.8e-09 Score=104.69 Aligned_cols=128 Identities=20% Similarity=0.126 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...++..+..+...|+++.|+..+...+...|+|+-++...++++...++..+|.+.+++++..+|+...+++.+|..+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 66666666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
+ .|++.+|+..+.+.+..+|+++..|..+++.|...|+..+|...+..
T Consensus 386 ~---~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 386 K---GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred h---cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 7 77777777777777777777777777777777777666555544433
No 128
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.17 E-value=2.4e-10 Score=113.60 Aligned_cols=254 Identities=15% Similarity=0.097 Sum_probs=176.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH
Q 040951 401 KTHGSRESLIALLRKAVTYFP-QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARM 479 (701)
Q Consensus 401 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 479 (701)
.-.|+|..++.-.+ ....+| ..........+.+...|+++..+.-+... ..| ...+...++.++...++-+.++.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~-~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSP-ELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSC-CCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CCh-hHHHHHHHHHHHhCccchHHHHH
Confidence 45789988887666 222333 23455677888888899987765544331 133 34455666666655456666666
Q ss_pred HHHHHHhcC-C-C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC
Q 040951 480 LLAKARDMG-G-T-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556 (701)
Q Consensus 480 ~~~~a~~~~-p-~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 556 (701)
.++..+... + . +-+....|.++...|+++.|+.++.+. .+.++.....+++...++++.|.+.++.+-+.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 665544332 2 2 444455567777889999999888764 5688888999999999999999999999988888
Q ss_pred CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL 636 (701)
Q Consensus 557 ~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~ 636 (701)
+++...+.-+++....| .+.+.+|..+|+......|.++.++..++.++...|++++|..++.+++..+|++
T Consensus 163 D~~l~qLa~awv~l~~g-~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~------- 234 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATG-GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND------- 234 (290)
T ss_dssp CHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-------
T ss_pred cHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-------
Confidence 77666666666665511 2469999999999888888999999999999999999999999999998888874
Q ss_pred HhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCc
Q 040951 637 IKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKV-DKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 637 ~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~ 694 (701)
|+++.+++.+....|+. +.+.+++.+....+|+++
T Consensus 235 -----------------------~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 235 -----------------------PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp -----------------------HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred -----------------------HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 66666666666666666 555666666666666543
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1e-09 Score=103.95 Aligned_cols=113 Identities=16% Similarity=0.025 Sum_probs=82.3
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCC
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~ 577 (701)
|.=+...++|.+|+..|.+||+++|.++.+|.+.+.+|.++|.++.|++.++.++.++|.+..+|.++|..+.. +|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~---~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA---LGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc---cCc
Confidence 44445667777777777777777777777777777777777777777777777777777777777777777777 777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 040951 578 LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKK 613 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 613 (701)
+.+|+..|++++.++|++...+..+.......+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 777777777777777777766666666665554443
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.05 E-value=3.9e-09 Score=91.84 Aligned_cols=102 Identities=12% Similarity=0.006 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLA 601 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 601 (701)
++.-...+.+|..+...|++++|..+|+-....+|.+...|+.+|.++.. .|++.+|+..|.+++..+|++|..+..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~---~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA---QKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44555666666666677777777777777777777777777777777777 777777777777777777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 602 TIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 602 l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
.|.++...|+.+.|+..|+.++..+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777777777666
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.1e-06 Score=93.31 Aligned_cols=351 Identities=16% Similarity=0.151 Sum_probs=213.2
Q ss_pred ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHH--------HHHHhhcCcccCCHHHHHHHHHHHH
Q 040951 286 LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIER--------GIRALQGEEVVIDRDTWMKEAEIAE 357 (701)
Q Consensus 286 l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~--------a~~~~~~~~~~~~~~~w~~~a~~~e 357 (701)
.|+.+.|.+..+-. .+..+|-.+|.++.+..+.+-|.-.+-. ++.....++. +.-...+-.
T Consensus 741 iG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~----e~eakvAvL-- 809 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE----EDEAKVAVL-- 809 (1416)
T ss_pred eccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc----chhhHHHHH--
Confidence 37888887655422 2467899999999888777755433322 2221111211 111122222
Q ss_pred HcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 040951 358 KAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLA 437 (701)
Q Consensus 358 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 437 (701)
....|-.++|..+|.+.-.. -.+-.+|...|.+++|.++.+.--.. .--..|+.+|..+...
T Consensus 810 --------AieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 --------AIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEAR 871 (1416)
T ss_pred --------HHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhh
Confidence 27889999999999887443 34556788899999998776543222 2235688999999999
Q ss_pred CChHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 040951 438 GDVPAARDILQEA----------YATIPN----------SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKS 497 (701)
Q Consensus 438 g~~~~A~~~l~~a----------~~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 497 (701)
+|.+.|+++|+++ +..+|. ++.+|.-.+..+...|+.+.|+.+|..+.. |+.+
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~ 944 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSM 944 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhh
Confidence 9999999999874 233333 234566677777778888888888877653 4555
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh------hhCCCC---HHH-------
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGC------NQCPNC---IPL------- 561 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al------~~~p~~---~~~------- 561 (701)
.++...+|+.++|-.+-++ ..+..+.+.+|+.|...|++.+|...|.++- .++..+ ..+
T Consensus 945 VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 5555666777776655443 3456677788888888888888887776653 233221 111
Q ss_pred ----HHHHHHHHhhhccCC-CHHHHHHHHHHH------HH-----------------hCC-CCHHHHHHHHHHHHhcCCH
Q 040951 562 ----WYSLANLEEKRNGLN-GLSKARAVLSVA------RL-----------------KNP-LNPEIWLATIRAESKHGNK 612 (701)
Q Consensus 562 ----~~~la~~~~~~~~~g-~~~~A~~~~~~a------~~-----------------~~p-~~~~~~~~l~~~~~~~g~~ 612 (701)
....++.|+. .| +..+|..+|.+| ++ ++| .+|.+....+.+.....+|
T Consensus 1020 ~~~d~v~aArYyEe---~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEE---LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred CchhHHHHHHHHHH---cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 2223334443 33 445555444332 11 123 4677888888888888899
Q ss_pred HHHHHHH------HHHHHhCCCCH-HHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 613 KEADSFI------AKALQKCPNSG-ILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 613 ~~A~~~~------~~al~~~p~~~-~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
++|..++ +.|+++|.+.. .+--..+.+.....+ ..+.. ..-.+++..+|.++.++|.|--|-+-|.+
T Consensus 1097 ekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd-~~~~e-----~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1097 EKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKD-DMPNE-----QERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcC-CCccH-----HHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 9887764 55666654322 111111111110000 00000 00146888999999999999999988877
Q ss_pred H
Q 040951 686 A 686 (701)
Q Consensus 686 a 686 (701)
|
T Consensus 1171 A 1171 (1416)
T KOG3617|consen 1171 A 1171 (1416)
T ss_pred h
Confidence 6
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.04 E-value=8.2e-09 Score=89.87 Aligned_cols=101 Identities=9% Similarity=-0.089 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 455 PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQ 533 (701)
Q Consensus 455 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 533 (701)
++.-+..+.++..+...|++++|..+|+-+....|. ...|+.+|.++...|++.+|+..|.+++.+.|+++..++..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 334444555555555556666666666655555555 5556666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhhC
Q 040951 534 LEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 534 ~~~~~~~~~~A~~~~~~al~~~ 555 (701)
++...|+.+.|++.|+.++..+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666665554
No 133
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.03 E-value=2.5e-06 Score=83.49 Aligned_cols=219 Identities=18% Similarity=0.131 Sum_probs=95.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc---HHHHHHHHHHHHH-cCC
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYF---PQA---EVLWLMGAKEKWL-AGD 439 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~---~~~~~~~a~~~~~-~g~ 439 (701)
...|+.+.|+.+-+.+-..-|.-+-+|..........|+++.|+++.+...... ++. ..+-+.-++.... .-|
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555555555555555555555555555555555555554443321 110 1111111221111 233
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHH-HHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEER-GFIEEGL 518 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~-~~~~~al 518 (701)
...|+..-.++.+..|+-...-+..+..+...|+..++-.+++.+.+..|.+.++..|... +.|+....+ +-..+.-
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dRlkRa~~L~ 322 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDRLKRAKKLE 322 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHHHHHHHHHH
Confidence 4445555555555555544444445555555555555555555555555554444333221 222221111 1112222
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 519 KRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 519 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
.+.|++....+..++.....|++..|+.--+.+....|.. .++..++++... ..|+-.+++.++.+++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeA--etGDqg~vR~wlAqav~ 391 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEA--ETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhh--ccCchHHHHHHHHHHhc
Confidence 3334444444444444444444444444444444444433 333444444443 02444444444444443
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.02 E-value=4.7e-08 Score=92.68 Aligned_cols=170 Identities=17% Similarity=0.065 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHH
Q 040951 458 EEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLM 530 (701)
Q Consensus 458 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 530 (701)
+..++..|..+...|++.+|+..|++++...|. +.+.+.+|..+...|++..|+..+++.+..+|++ +.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 445566666666777777777777777766665 5666666667777777777777777777776665 335555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH--------------
Q 040951 531 LGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP-------------- 596 (701)
Q Consensus 531 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~-------------- 596 (701)
+|.++.....-. + ..... .+...+|+..|+..+...|+++
T Consensus 85 ~g~~~~~~~~~~---------~--------------~~~~D---~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 85 LGLSYYKQIPGI---------L--------------RSDRD---QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp HHHHHHHHHHHH---------H---------------TT------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccc---------h--------------hcccC---hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 555544432111 0 00111 2333445555555555555443
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhc
Q 040951 597 ---EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHD 673 (701)
Q Consensus 597 ---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~ 673 (701)
.--+..|.+|.+.|.+..|..-++.+++..|+++.. ++++..++..+.+.
T Consensus 139 ~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~---------------------------~~al~~l~~~y~~l 191 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA---------------------------EEALARLAEAYYKL 191 (203)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH---------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH---------------------------HHHHHHHHHHHHHh
Confidence 123446788889999999999999999999986422 56777788888888
Q ss_pred CCHHHHH
Q 040951 674 RKVDKAR 680 (701)
Q Consensus 674 g~~~~A~ 680 (701)
|..+.|.
T Consensus 192 ~~~~~a~ 198 (203)
T PF13525_consen 192 GLKQAAD 198 (203)
T ss_dssp T-HHHHH
T ss_pred CChHHHH
Confidence 8887554
No 135
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.01 E-value=2e-06 Score=84.17 Aligned_cols=292 Identities=18% Similarity=0.151 Sum_probs=216.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-
Q 040951 313 AAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS- 391 (701)
Q Consensus 313 ~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~- 391 (701)
-|.+..-.|+-..|.++-.++-+.+..+.. ...-+..++.. .-.|+++.|++-|+.++. +|....
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqe---pLIhlLeAQaa----------l~eG~~~~Ar~kfeAMl~-dPEtRll 155 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQE---PLIHLLEAQAA----------LLEGDYEDARKKFEAMLD-DPETRLL 155 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccch---HHHHHHHHHHH----------HhcCchHHHHHHHHHHhc-ChHHHHH
Confidence 355566678888888888888776665532 22333334433 778999999999998875 443322
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHH----HHHHH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI---PNSEE----IWLAA 464 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~---p~~~~----~~~~l 464 (701)
....+-.-....|..+.|+.+-+++-..-|.-+.++..........|+++.|+++++...... ++-.+ +.+..
T Consensus 156 GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 156 GLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 222233333578999999999999999999999999988888889999999999997665432 33111 22222
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 040951 465 FKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 543 (701)
--.....-+...|+..-..+.+..|+ ...-...+..++..|+..++-.+++.+.+..|. |.++..+.. .+.|+...
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~--ar~gdta~ 312 (531)
T COG3898 236 KAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVR--ARSGDTAL 312 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHH--hcCCCcHH
Confidence 22223345688899999999999999 556666788889999999999999999999998 666554433 35555433
Q ss_pred HH-HHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 040951 544 AK-EAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKH-GNKKEADSFIAK 621 (701)
Q Consensus 544 A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 621 (701)
.+ +-.++.....|++.+..+..++.... .|++..|+.--+.+....|.. .++..+++++... |+..++...+.+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAld---a~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALD---AGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHh---ccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHH
Confidence 22 22333445789999999999999999 999999999999999999976 6788888888766 999999999999
Q ss_pred HHHh
Q 040951 622 ALQK 625 (701)
Q Consensus 622 al~~ 625 (701)
++..
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 9874
No 136
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=3.1e-07 Score=86.52 Aligned_cols=181 Identities=9% Similarity=-0.038 Sum_probs=116.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
.+...|+.|++++..-.+..|.+......++.+|....++..|-.+|++.-...|......+..++.+.+.+.+..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56678899999999999999999889999999999999999999999999999999888888888888888888888777
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH
Q 040951 447 LQEAYATIPN-SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF 525 (701)
Q Consensus 447 l~~a~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 525 (701)
...+... |+ .......-+-+....+++..++.+.++.-. ..+..+....|-+.++.|+++.|.+-|+.+++...-++
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 6655432 11 111111122223334444444444433210 01144444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQ 549 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~ 549 (701)
.+-+.++.++.+.|+++.|.+...
T Consensus 179 llAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHH
Confidence 555555555555555555554433
No 137
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.98 E-value=9.5e-09 Score=102.47 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER-LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
-+|+.+..+..+.+..+.|+.+|.+|++..+....+|...|.+... .++.+.|..+|+.+++..|.+..+|..++.++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3678888888888888888888888886666678888888888776 456666889999988888888888888888888
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNP---EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~ 634 (701)
. .|+.+.|+.+|++++...|... .+|..++.++...|+.+....+..++.+..|.+..+..
T Consensus 82 ~---~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 82 K---LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp H---TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred H---hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8 8888999999999888777554 68888899999999999888998888888888665444
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.98 E-value=8.8e-08 Score=90.86 Aligned_cols=174 Identities=18% Similarity=0.064 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHH
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS---EEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWM 495 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~ 495 (701)
.+..++..|......|++.+|+..|+++....|.+ +.+.+.++..+...|+++.|+..+++.+..+|+ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46778889999999999999999999999999875 568889999999999999999999999999987 67888
Q ss_pred HHHHHHHHhC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHH
Q 040951 496 KSAIVERELG-----------NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYS 564 (701)
Q Consensus 496 ~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 564 (701)
..|..+.... ...+|+..|+..+..+|+++-+-. |...+..+-.. -..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~~l~~~---la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLAELRNR---LAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHHHHHHH---HHHHHHH
Confidence 8888765442 123677777777888877642211 11111110000 0111344
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 040951 565 LANLEEKRNGLNGLSKARAVLSVARLKNPLNP---EIWLATIRAESKHGNKKEAD 616 (701)
Q Consensus 565 la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 616 (701)
.|.+|.+ .|.+..|+.-++.+++..|+.+ +++..++..+...|..+.|.
T Consensus 147 ia~~Y~~---~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYK---RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHC---TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHH---cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 6777777 8888888888888888888776 56677777888888777443
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=5.8e-09 Score=98.98 Aligned_cols=112 Identities=14% Similarity=0.033 Sum_probs=98.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~ 442 (701)
+......++|.+|+..|.++|.++|+++..+-..+..|.+.|.++.|++-++.++..+|....+|..++..+...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34458889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcH
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKLEFENREL 474 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~ 474 (701)
|+..|++++.++|++...+..+-......++.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999887776665554444433
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.9e-08 Score=96.43 Aligned_cols=124 Identities=23% Similarity=0.185 Sum_probs=112.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHH
Q 040951 506 NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVL 585 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~ 585 (701)
..+..+.-++.-+..+|++.+-|..+|.+|..+|++..|...|.+++++.|++++.+..++.++....+.....++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34566677888899999999999999999999999999999999999999999999999999888644456778999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 586 SVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 586 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
++++..+|.+......++.-++..|++.+|...++..+...|.+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999998865
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.98 E-value=1.3e-07 Score=91.72 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWL 529 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 529 (701)
++..++..+..+...|++++|+..|++++...|. ..+.+.+|.++...++++.|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4455556666666666677777777666666665 3344566666666666666666666666666665 33455
Q ss_pred HHHHHHHHcCC------------------HHHHHHHHHHHhhhCCCCHHH---HHHHHHHHhhhccCCCHHHHHHHHHHH
Q 040951 530 MLGQLEERLGH------------------LKEAKEAYQSGCNQCPNCIPL---WYSLANLEEKRNGLNGLSKARAVLSVA 588 (701)
Q Consensus 530 ~la~~~~~~~~------------------~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~g~~~~A~~~~~~a 588 (701)
.+|.++...+. ..+|...|+..++..|++... ...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----------------- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----------------- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------
Confidence 55555444431 123445555555555554221 1111111000
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHH
Q 040951 589 RLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAK 668 (701)
Q Consensus 589 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~ 668 (701)
+ ..--+..+.+|.+.|.+..|+.-++.+++..|++ |..++++..++.
T Consensus 174 l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t---------------------------~~~~eal~~l~~ 220 (243)
T PRK10866 174 L------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT---------------------------QATRDALPLMEN 220 (243)
T ss_pred H------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC---------------------------chHHHHHHHHHH
Confidence 0 0123356788999999999999999999999985 345889999999
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 040951 669 LFWHDRKVDKARNWFNKA 686 (701)
Q Consensus 669 ~~~~~g~~~~A~~~~~~a 686 (701)
.|...|..++|..+....
T Consensus 221 ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 221 AYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCChHHHHHHHHHH
Confidence 999999999999887654
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.97 E-value=1.3e-08 Score=105.24 Aligned_cols=111 Identities=15% Similarity=0.074 Sum_probs=82.5
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccC
Q 040951 496 KSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL 575 (701)
Q Consensus 496 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 575 (701)
..|...+..|+++.|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++.. .
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~---l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK---L 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH---h
Confidence 3455566677777777777777777777777777777777777777777777777777777777777777777777 7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 040951 576 NGLSKARAVLSVARLKNPLNPEIWLATIRAESKH 609 (701)
Q Consensus 576 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 609 (701)
|++++|+..|++++..+|+++.+...++.+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7777777777777777777777766666665443
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=9e-08 Score=85.96 Aligned_cols=193 Identities=16% Similarity=0.159 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...++..|.+|-..|-..-|+--|.+++.+.|.-+.++..+|..+...|+++.|.+.|...++.+|....+..+.|....
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34455556677777778888888888888888888888888888888888888888888888888888777777777766
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHhCCCCHHHHHHHHhcCCCccchh
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNP--EIWLATIRAESKHGNKKEADSFI-AKALQKCPNSGILWAELIKMVPHHDRKS 647 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~p~~~~l~~~~~~~~~~~~~~~ 647 (701)
. -|++.-|...+.+-.+.+|++| .+|+.+... .-++.+|..-+ +++.+.+ +..--|.-...+...-..+.
T Consensus 145 Y---~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~---k~dP~~A~tnL~qR~~~~d-~e~WG~~iV~~yLgkiS~e~ 217 (297)
T COG4785 145 Y---GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ---KLDPKQAKTNLKQRAEKSD-KEQWGWNIVEFYLGKISEET 217 (297)
T ss_pred e---cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh---hCCHHHHHHHHHHHHHhcc-HhhhhHHHHHHHHhhccHHH
Confidence 6 7888888888888888888887 355544332 22455555443 3443322 22222222222222333333
Q ss_pred HHHHHHHhcCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 648 KGKDALVKSDRD-------PHVFAAVAKLFWHDRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 648 ~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 690 (701)
.+.++..-..++ .+.++.+|+.+...|+.++|...|+-|+..+
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 333333333322 5678899999999999999999999988653
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.93 E-value=3.3e-07 Score=89.00 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=32.5
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPLNP---EIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
..|.+|.+ .|.+..|+.-++.++...|+.+ ++...++..+...|..++|.....
T Consensus 180 ~ia~~Y~~---~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 180 SVAEYYTK---RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHH---cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45556666 6666666666666666665543 455556666666666666655443
No 145
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=7.3e-07 Score=94.65 Aligned_cols=227 Identities=15% Similarity=0.092 Sum_probs=170.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHh---CCCcHHHHHHHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLR--------KAVTY---FPQAEVLWLMGAKE 433 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~---~p~~~~~~~~~a~~ 433 (701)
.|..-|+.+.|....+-+ .+..+|-.++.++.+..+.+-|.-++- +++.. +|+ ..-...|-+
T Consensus 737 fyvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHH
Confidence 456788999887765543 345689999999998877777665552 22222 333 333445556
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHH
Q 040951 434 KWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGF 513 (701)
Q Consensus 434 ~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~ 513 (701)
....|..++|..+|.+.-.. -.+-++|...|.+++|.++.+.--.++ -...|+.++..+...+|.+.|+++
T Consensus 810 AieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhhccHHHHHHH
Confidence 67789999999999987543 245678888999999988765421111 156789999999999999999999
Q ss_pred HHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhc
Q 040951 514 IEEG----------LKRFPS----------FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRN 573 (701)
Q Consensus 514 ~~~a----------l~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 573 (701)
|+++ +..+|. ++.+|...|+.....|+.+.|+.+|..+ .=|+.+.++..-
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~-- 950 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCI-- 950 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEee--
Confidence 9873 444554 4678888999999999999999999987 347788888888
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 574 GLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKAL 623 (701)
Q Consensus 574 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 623 (701)
+|+.++|-.+.++ ..+-.+.+.+++.|...|+..+|+..|.+|-
T Consensus 951 -qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 -QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999876554 4566788899999999999999999888763
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.91 E-value=3.9e-08 Score=98.05 Aligned_cols=139 Identities=18% Similarity=0.293 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL-AGDVPAARDILQEAYATIPNSEEIWLAAFKLEF 469 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~ 469 (701)
-+|..+..+..+.+..+.|+.+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+..+|+.++.++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3788999999999999999999999997666778999999999777 566777999999999999999999999999999
Q ss_pred HcCcHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHH
Q 040951 470 ENRELERARMLLAKARDMGGTE----RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWL 529 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~p~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 529 (701)
..|+.+.|+.+|++++...|.. .+|..+..++...|+.+....+.+++.+..|.+..+..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999999887773 59999999999999999999999999999988554443
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.90 E-value=3.7e-08 Score=101.87 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=96.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
.....|+++.|+..|++++..+|++..+|..++.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 445 DILQEAYATIPNSEEIWLAAFKLEFEN 471 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~~la~~~~~~ 471 (701)
..|++++..+|++..+...+..+....
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999988877776665443
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=4.6e-08 Score=84.35 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHH
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLA 566 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la 566 (701)
.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|...|+.++..+|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34444555555555555555555555555443 3345555555555555555555555555554443 34455555
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 567 NLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 567 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
.++.. .|++++|...+++++...|+++
T Consensus 84 ~~~~~---~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQE---LGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHH---hCChHHHHHHHHHHHHHCcCCh
Confidence 55555 5555555555555555555543
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.86 E-value=8.7e-08 Score=82.56 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC---HHH
Q 040951 525 FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN---PEI 598 (701)
Q Consensus 525 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~ 598 (701)
++.++.+|..+...|++++|...|.+++..+|++ ..+++.+|.++.. .|+++.|...|++++...|++ +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA---QGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 4678899999999999999999999999999886 5689999999999 999999999999999998875 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQKCPNSGIL 632 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l 632 (701)
+..++.++...|++++|...+.+++...|+++..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999999987543
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=2.5e-05 Score=83.97 Aligned_cols=419 Identities=15% Similarity=0.143 Sum_probs=242.0
Q ss_pred hcHHHHHHHHHHHhhhCCCCHHHHHHHHhh---c-CcchHHHHHHHHHHhCCCcHHHHHHHHHccc------CHHHHHHH
Q 040951 166 KEEAAARKLITKGCNMCPKNEDVWLEACRL---A-RPDEAKGVVAKGVRQIPKSVRLWLQAAELDH------DKANKSRV 235 (701)
Q Consensus 166 g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l---~-~~~~A~~~l~~al~~~P~~~~lw~~~~~le~------~~~~a~~~ 235 (701)
|..++=..-+++-+..++.+....+..+.| . ..+.-...-.++.+.-|.++.+|+..+.-+. +..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 445555666667777777777654444433 2 2233333344455566777777777665332 55566777
Q ss_pred HHHHHHhcCCCHHHHHHHHhhc-----------CHHHHHHHHHHHHHHCCCC----HHHHHHHHhccChHHHHHHHHHHH
Q 040951 236 LRMALDEIPDSVRLWKALVEIS-----------SEEEARILLHRAVECCPLD----VELWLALARLETYGVARSVLNKAR 300 (701)
Q Consensus 236 l~kal~~~P~~~~l~~~~~~l~-----------~~~~A~~~l~~a~~~~P~~----~~l~~~l~~l~~~~~A~~~l~~a~ 300 (701)
|++||- +-+++.+|..++.+- +++.-+.+|.+++...-.. ..+|..+..+
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~-------------- 237 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREF-------------- 237 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHH--------------
Confidence 777775 456777777766431 3444455555554432221 1233332222
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHH--HHHHHcCCcHHHHHhcCCHHHHHHH
Q 040951 301 KKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEA--EIAEKAGSDAEECKKRGSIETARAI 378 (701)
Q Consensus 301 ~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a--~~~e~~~~~a~~~~~~~~~~~A~~~ 378 (701)
...+...-..++...++.+.+...-+. ......|.... ...... .-..+....+...-+..
T Consensus 238 -------------e~~~l~n~~~~qv~a~~~~el~~~~D~--~~~~~~~~~~sk~h~~~~~--~~~~~~a~~~l~~~~~~ 300 (881)
T KOG0128|consen 238 -------------EVTYLCNVEQRQVIALFVRELKQPLDE--DTRGWDLSEQSKAHVYDVE--TKKLDDALKNLAKILFK 300 (881)
T ss_pred -------------HHHHHHhHHHHHHHHHHHHHHhccchh--hhhHHHHHHHHhcchHHHH--hccHHHHHHHHHHHHHH
Confidence 111222222233444444444321000 00011111100 000000 00000111122334445
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCC
Q 040951 379 FSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL-AGDVPAARDILQEAYATIPNS 457 (701)
Q Consensus 379 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~a~~~~p~~ 457 (701)
+++.+...|.....|..+..++...|++.-....+++++...+.+...|..++...-. .+-.+.+...+.+++..+|-.
T Consensus 301 ~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t 380 (881)
T KOG0128|consen 301 FERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT 380 (881)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchH
Confidence 6777777888888999999999999999999999999999999999999999887644 555667788899999999998
Q ss_pred HHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------ChHHHHHHHHHHHHhC--------C
Q 040951 458 EEIWLAAFKLEFENRE-LERARMLLAKARDMGGTERVWMKSAIVERELG------NNAEERGFIEEGLKRF--------P 522 (701)
Q Consensus 458 ~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g------~~~~A~~~~~~al~~~--------p 522 (701)
..+|-..-..+.+.+. ...-...+.+.+... ...++.+.......+ +++.-...|..|.... -
T Consensus 381 gdL~~rallAleR~re~~~vI~~~l~~~ls~~--~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~D 458 (881)
T KOG0128|consen 381 GDLWKRALLALERNREEITVIVQNLEKDLSMT--VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLD 458 (881)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888765544434333 333444455544321 112222222222222 2333333444433221 1
Q ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhCCCCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC--CCC-HH
Q 040951 523 SFFNLWLMLGQLEE-RLGHLKEAKEAYQSGCNQCPNCIP-LWYSLANLEEKRNGLNGLSKARAVLSVARLKN--PLN-PE 597 (701)
Q Consensus 523 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~-~~ 597 (701)
....++...++++. .+++.+.++.+....+.....+.. .|+....+... .|+...++.++.+++... |++ ..
T Consensus 459 t~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~---~g~~~~~R~~~R~ay~~~~~~~~~~e 535 (881)
T KOG0128|consen 459 TRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLERE---YGDGPSARKVLRKAYSQVVDPEDALE 535 (881)
T ss_pred hHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHH---hCCchhHHHHHHHHHhcCcCchhHHH
Confidence 12455666677754 568999999999988776666655 89999999999 999999999988887654 332 25
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 598 IWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 598 ~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
++..+-+++...|.++......++
T Consensus 536 v~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 536 VLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhHHh
Confidence 677777888888888766655443
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.86 E-value=1.3e-07 Score=84.46 Aligned_cols=116 Identities=21% Similarity=0.181 Sum_probs=77.8
Q ss_pred HcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChH
Q 040951 436 LAGDVPAARDILQEAYATIPNS---EEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNA 508 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~ 508 (701)
..++...+...++.....+|++ ..+.+.++..+...|++++|...|+.++...|+ +.+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4666667777777777777776 345556777777777777777777777776554 345666677777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGC 552 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 552 (701)
+|+..++. +...+..+..+..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77777755 23333345666777777777777777777777653
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-07 Score=91.13 Aligned_cols=121 Identities=15% Similarity=0.062 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---ChHHHHHH
Q 040951 370 GSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG---DVPAARDI 446 (701)
Q Consensus 370 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~ 446 (701)
.+.+..+.-++.-+..+|++..-|..+|.+|+.+|+++.|...|.+++++.|++++++..++.++..+. +..++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 346677777888888899999999999999999999999999999999999999999998888877633 46788888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT 490 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~ 490 (701)
|++++..+|++..+...++.-+++.|++.+|...++.+++..|.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999998888888888888888898888888888887766
No 153
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.85 E-value=2.7e-08 Score=97.42 Aligned_cols=260 Identities=15% Similarity=0.014 Sum_probs=188.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHH
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKS----IWLKAAQLEKTHGSRESLIALLRKAVTY------FPQAEVLWLMGAK 432 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~ 432 (701)
++-..+.|++...+.+|+.+++...++.. +|..++..|.-.++|++|.++-..-+.. .-......-.++.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34558999999999999999999877754 5667777888888888887765433221 1122333445677
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCc--------------------HHHHHHHHHHHHh
Q 040951 433 EKWLAGDVPAARDILQEAYATIPN------SEEIWLAAFKLEFENRE--------------------LERARMLLAKARD 486 (701)
Q Consensus 433 ~~~~~g~~~~A~~~l~~a~~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a~~ 486 (701)
.+...|.+++|+.+..+-+..... ...+++.++.+|...|. ++.|.+.|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 777889999999888776654311 24477889999988763 3445555554444
Q ss_pred cCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 487 MGGT-------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS------FFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 487 ~~p~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
.... .+.+-.+|..|+..|+++.|+..-+.-+.+... .-.++..+|.++.-.|+++.|.+.|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 3221 456677788888999999999988776655432 245788999999999999999999998765
Q ss_pred h----CCC--CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 554 Q----CPN--CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP------LNPEIWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 554 ~----~p~--~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
+ ... .....+.++..|.- ..++++|+.++.+-+.... .....+..+|..+...|..++|....++
T Consensus 264 LAielg~r~vEAQscYSLgNtytl---l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTL---LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3 222 24557888888888 8899999999988765432 2346778899999999999999988877
Q ss_pred HHHh
Q 040951 622 ALQK 625 (701)
Q Consensus 622 al~~ 625 (701)
.++.
T Consensus 341 hl~~ 344 (639)
T KOG1130|consen 341 HLRS 344 (639)
T ss_pred HHHH
Confidence 7654
No 154
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.85 E-value=3.8e-08 Score=96.44 Aligned_cols=268 Identities=10% Similarity=-0.023 Sum_probs=188.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----C--CCCHHHHHHHHH
Q 040951 397 AQLEKTHGSRESLIALLRKAVTYFPQA----EVLWLMGAKEKWLAGDVPAARDILQEAYAT----I--PNSEEIWLAAFK 466 (701)
Q Consensus 397 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~----~--p~~~~~~~~la~ 466 (701)
+.-+.+.|++...+.+|+.+++....+ ..+|..++..|...+||++|+++-..-+.. . -.....--.++.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 345568899999999999999987655 346778888898999999998764332221 1 111223346788
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHhCCh-------------HHHHHHHHHHHHhCCCC--
Q 040951 467 LEFENRELERARMLLAKARDMGG-------TERVWMKSAIVERELGNN-------------AEERGFIEEGLKRFPSF-- 524 (701)
Q Consensus 467 ~~~~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~a~~~~~~g~~-------------~~A~~~~~~al~~~p~~-- 524 (701)
.+-..|.|++|+-+..+-+.... ..++++.+|.+|...|.. +++...++.+.+.+-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 88889999999998887775432 178899999999876531 23444444444433322
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHhhhccCCCHHHHHHHHHH
Q 040951 525 -----------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSLANLEEKRNGLNGLSKARAVLSV 587 (701)
Q Consensus 525 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~ 587 (701)
..++-.+|..|.-.|+|++|+..-+.-+.+.... -.++..++.++.- .|+++.|.+.|.+
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif---lg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF---LGNFELAIEHYKL 260 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh---hcccHhHHHHHHH
Confidence 2345566667778899999998887766543322 3467788888888 9999999999988
Q ss_pred HHHhC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChH
Q 040951 588 ARLKN----PL--NPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPH 661 (701)
Q Consensus 588 a~~~~----p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 661 (701)
.+... .. .....+.+|..|.-..+++.|+.++.+-+.+... |.-......
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe------------------------L~DriGe~R 316 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE------------------------LEDRIGELR 316 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHhhhhHH
Confidence 76543 22 2356777888888888888999888887665321 111122356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 662 VFAAVAKLFWHDRKVDKARNWFNKAVSLDP 691 (701)
Q Consensus 662 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 691 (701)
+...+|..|-..|..++|+.+.++.+++.-
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998887643
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.81 E-value=1.9e-05 Score=76.83 Aligned_cols=223 Identities=26% Similarity=0.223 Sum_probs=168.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCcHHHHH
Q 040951 403 HGSRESLIALLRKAVTYFPQ--AEVLWLMGAKEKWLAGDVPAARDILQEAYA--TIPNSEEIWLAAFKLEFENRELERAR 478 (701)
Q Consensus 403 ~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~--~~p~~~~~~~~la~~~~~~~~~~~A~ 478 (701)
.+....+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+..+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666667777666665 356667777777778888888888888776 56667777778888888888888888
Q ss_pred HHHHHHHhcCCC-HHHHHHHHH-HHHHhCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 479 MLLAKARDMGGT-ERVWMKSAI-VERELGNNAEERGFIEEGLKRFP---SFFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 479 ~~~~~a~~~~p~-~~~~~~~a~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
..+..+....+. ......... ++...|+++.|...+.+++...| .........+..+...++++.+...+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888888876665 333444444 67788888888888888877666 3455666666667778888888888888888
Q ss_pred hCCC-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 554 QCPN-CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 554 ~~p~-~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
..|. ....+..++..+.. .+++..|...+..++...|.....+...+..+...|..+.+...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLK---LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHH---cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888 67888888888888 888888888888888888876666677776666677788888888888888875
No 156
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.79 E-value=1.5e-05 Score=77.52 Aligned_cols=223 Identities=23% Similarity=0.207 Sum_probs=193.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 369 RGSIETARAIFSHACTVFLT--KKSIWLKAAQLEKTHGSRESLIALLRKAVT--YFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 369 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
.+.+..+...+...+...+. ........+..+...+.+..+...+...+. ..+.....+...+......+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35667777788888888776 367788888999999999999999999987 67888889999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCcHHHHHHHHHHHHhcCC---C-HHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 040951 445 DILQEAYATIPNSEEIWLAAFK-LEFENRELERARMLLAKARDMGG---T-ERVWMKSAIVERELGNNAEERGFIEEGLK 519 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~a~~~~p---~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 519 (701)
..+..+....+.+......... ++...|+++.|...+.+++...| . .......+..+...+++..++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877555655666 89999999999999999988666 2 55555666667788999999999999999
Q ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC
Q 040951 520 RFPS-FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 520 ~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 594 (701)
..|. ....+..++..+...+++..|...+..++...|.....+...+..+.. .+.+..+...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE---LGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH---cCCHHHHHHHHHHHHHhCcc
Confidence 9999 799999999999999999999999999999999877777777777777 89999999999999999987
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.79 E-value=3.3e-07 Score=81.92 Aligned_cols=117 Identities=21% Similarity=0.135 Sum_probs=93.2
Q ss_pred HhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhccCC
Q 040951 503 ELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNGLN 576 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~g 576 (701)
..++...+...++..+..+|++ ....+.++.++...|++++|...|+.++...|+. ..+.+.++.++.. .|
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~---~~ 99 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ---QG 99 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---cC
Confidence 4678888888888888888887 5567778888888889999998888888877654 4467788888888 88
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 577 GLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKAL 623 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 623 (701)
++++|+..++. +...+-.+.++...|.++...|++++|+..|++++
T Consensus 100 ~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 100 QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 89998888866 33344556778888888999999999988888774
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.78 E-value=8e-08 Score=78.60 Aligned_cols=97 Identities=30% Similarity=0.264 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAES 607 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 607 (701)
++.+|.++...|++++|...++++++..|.+..++..++.++.. .|++++|...|++++...|.++.++..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK---LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 34444444445555555555555555555444445555555555 455555555555555555554445555555555
Q ss_pred hcCCHHHHHHHHHHHHHhCC
Q 040951 608 KHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 608 ~~g~~~~A~~~~~~al~~~p 627 (701)
..|+++.|...+.+++..+|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 55555555555555544443
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.77 E-value=9.3e-08 Score=78.20 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhh
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKR 572 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 572 (701)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...+++++|...|+.++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK- 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-
Confidence 3455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCCCHHHHHHHHHHHHHhCC
Q 040951 573 NGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 573 ~~~g~~~~A~~~~~~a~~~~p 593 (701)
.|++++|...+.+++..+|
T Consensus 81 --~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 --LGKYEEALEAYEKALELDP 99 (100)
T ss_pred --HHhHHHHHHHHHHHHccCC
Confidence 6666666666666666555
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.77 E-value=0.00042 Score=75.55 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=116.9
Q ss_pred cchHHHHHHHHHHhCCCcHHHH-HHHHHccc--CHHHHHHHHHHHHHhcCCCHH----HHHHHHhhcCHHHHHHHHHHHH
Q 040951 198 PDEAKGVVAKGVRQIPKSVRLW-LQAAELDH--DKANKSRVLRMALDEIPDSVR----LWKALVEISSEEEARILLHRAV 270 (701)
Q Consensus 198 ~~~A~~~l~~al~~~P~~~~lw-~~~~~le~--~~~~a~~~l~kal~~~P~~~~----l~~~~~~l~~~~~A~~~l~~a~ 270 (701)
..+|.+.+.+.++.+|+....- +++..+.. ..++|..+++..-..-|++.. +-..|.+++..++|..+|++++
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3467777777777788766321 12222221 445566444333333333333 2233445567777777888887
Q ss_pred HHCCCCHHH----HHHHHhccChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChhH---------HHHHHHHHHHH
Q 040951 271 ECCPLDVEL----WLALARLETYGVARSVLNKARKKLPKERAI-WIAAAKLEEANGNTSM---------VGKIIERGIRA 336 (701)
Q Consensus 271 ~~~P~~~~l----~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~-~~~~a~~~~~~g~~~~---------a~~~~~~a~~~ 336 (701)
..+|. .++ ..++++.++|.+-.++--+.-+..|+++-. |....-+.......+. |...+++.++.
T Consensus 105 ~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~ 183 (932)
T KOG2053|consen 105 QKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK 183 (932)
T ss_pred hhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc
Confidence 77777 432 344566666666555555555567766443 4333333333332222 22333333321
Q ss_pred hhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHH-HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040951 337 LQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSH-ACTVF-LTKKSIWLKAAQLEKTHGSRESLIALLR 414 (701)
Q Consensus 337 ~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~-al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 414 (701)
. +..........+. .+...+|.+++|..++.. ..+.. +.+...-..-..++...+++.+..++..
T Consensus 184 ~---gk~~s~aE~~Lyl----------~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 184 K---GKIESEAEIILYL----------LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred C---CccchHHHHHHHH----------HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 1 1110111111111 123678899999999843 33444 4455555566788888999999999999
Q ss_pred HHHHhCCCc
Q 040951 415 KAVTYFPQA 423 (701)
Q Consensus 415 ~al~~~p~~ 423 (701)
+++...+++
T Consensus 251 ~Ll~k~~Dd 259 (932)
T KOG2053|consen 251 RLLEKGNDD 259 (932)
T ss_pred HHHHhCCcc
Confidence 999999887
No 161
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=2.5e-05 Score=84.00 Aligned_cols=373 Identities=16% Similarity=0.229 Sum_probs=233.7
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhc-----Cc--chHHHHHHHHHHhCCCcHHHHHHHHHccc-
Q 040951 156 IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLA-----RP--DEAKGVVAKGVRQIPKSVRLWLQAAELDH- 227 (701)
Q Consensus 156 i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~-----~~--~~A~~~l~~al~~~P~~~~lw~~~~~le~- 227 (701)
|..+|+ .|+++.-+.--.++-+..|-++.+|++.++=. .. ..+...|++|+ .+-+++.+|..++.+..
T Consensus 120 i~llrk---~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal-~dy~~v~iw~e~~~y~~~ 195 (881)
T KOG0128|consen 120 IGLLRK---LGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL-GDYNSVPIWEEVVNYLVG 195 (881)
T ss_pred HHHHHH---hcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh-cccccchHHHHHHHHHHh
Confidence 444454 47777777777777777888889999887632 12 26677899998 57889999999987543
Q ss_pred ---------CHHHHHHHHHHHHHhcCCCH----HHHHHHHhhc-------CHHHHHHHHHHHHHHCCCCHHHHH--H---
Q 040951 228 ---------DKANKSRVLRMALDEIPDSV----RLWKALVEIS-------SEEEARILLHRAVECCPLDVELWL--A--- 282 (701)
Q Consensus 228 ---------~~~~a~~~l~kal~~~P~~~----~l~~~~~~l~-------~~~~A~~~l~~a~~~~P~~~~l~~--~--- 282 (701)
+++.-+.+|.++|...-... .+|..|.+++ ..++...++.+.+. +|-+.+... .
T Consensus 196 ~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~-~~~D~~~~~~~~~~~ 274 (881)
T KOG0128|consen 196 FGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK-QPLDEDTRGWDLSEQ 274 (881)
T ss_pred ccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-ccchhhhhHHHHHHH
Confidence 56667889999998654443 3899998876 23456677777664 454433211 1
Q ss_pred ------HHhccChHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHH
Q 040951 283 ------LARLETYGVAR-------SVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTW 349 (701)
Q Consensus 283 ------l~~l~~~~~A~-------~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w 349 (701)
.....++++|. ..+++.+...|.-...|..+...+...|.......++++++...+.+ +..|
T Consensus 275 sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~-----~~~w 349 (881)
T KOG0128|consen 275 SKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD-----RALW 349 (881)
T ss_pred HhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc-----HHHH
Confidence 01112344443 34555566667778899999999999999999999999998764443 7889
Q ss_pred HHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHH
Q 040951 350 MKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS-RESLIALLRKAVTYFPQAEVLWL 428 (701)
Q Consensus 350 ~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~ 428 (701)
+.++.... ...+-...+...+-+++...|....+|...-..+.+.+. .......+.+++...- .+++
T Consensus 350 i~y~~~~d---------~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~---~l~~ 417 (881)
T KOG0128|consen 350 IGYGVYLD---------TELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV---ELHN 417 (881)
T ss_pred hhhhhhcc---------cccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH---HHHH
Confidence 98886542 334444566677778888888877777766544444332 2233344444443210 1112
Q ss_pred HHHHHHHH-------------cCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCCC--H
Q 040951 429 MGAKEKWL-------------AGDVPAARDILQEAYATI-PNSEEIWLAAFKLEF-ENRELERARMLLAKARDMGGT--E 491 (701)
Q Consensus 429 ~~a~~~~~-------------~g~~~~A~~~l~~a~~~~-p~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~p~--~ 491 (701)
.+...... ...+..|...|....... -....++...+.++. ..++.+.++.+....+..... .
T Consensus 418 ~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~ia 497 (881)
T KOG0128|consen 418 DYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIA 497 (881)
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHH
Confidence 11111111 223566677776666542 112334444555553 456778888887776655443 3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRF--PSF-FNLWLMLGQLEERLGHLKEAKEAYQS 550 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 550 (701)
..|+.+..+....|+...++.++.+++..- |++ -.++..+-++....|.++.......+
T Consensus 498 g~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 498 GKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred HHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 378888888888888888888777776543 321 33455555556666666665554443
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.75 E-value=1.5e-06 Score=87.10 Aligned_cols=131 Identities=20% Similarity=0.115 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--------
Q 040951 426 LWLMGAKEKWLA-GDVPAARDILQEAYATIPN--S----EEIWLAAFKLEFENRELERARMLLAKARDMGGT-------- 490 (701)
Q Consensus 426 ~~~~~a~~~~~~-g~~~~A~~~l~~a~~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------- 490 (701)
.+..+|.++... |++++|++.|++|...... . ......++.++...|+|++|+.+|++.....-.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344456666666 7888888888888766421 1 224556777788888888888888877764321
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH--HcCCHHHHHHHHHHHhhhCC
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF-----FNLWLMLGQLEE--RLGHLKEAKEAYQSGCNQCP 556 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~p 556 (701)
...++..+.++...||+..|...+++....+|.. ..+...+...+. ....++.++.-|....+++|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 2344555666777777777877777777777653 223333444433 23455566666665544433
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.73 E-value=4.9e-07 Score=83.49 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 567 (701)
...++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|++++...|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4455666666666666666666666666655442 3466666777777777777777777777777766666666666
Q ss_pred HHhhhccCCCHHHHHHHHHH
Q 040951 568 LEEKRNGLNGLSKARAVLSV 587 (701)
Q Consensus 568 ~~~~~~~~g~~~~A~~~~~~ 587 (701)
++.. .|+...+...++.
T Consensus 115 ~~~~---~g~~~~a~~~~~~ 131 (172)
T PRK02603 115 IYHK---RGEKAEEAGDQDE 131 (172)
T ss_pred HHHH---cCChHhHhhCHHH
Confidence 6666 6665444444433
No 164
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=0.00015 Score=76.62 Aligned_cols=285 Identities=16% Similarity=0.110 Sum_probs=165.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
...|+++.|+..|-.+- ..............+.+|+.+++..-... .....|-..+.-|...|+++.|.++
T Consensus 717 ~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHH
Confidence 55677777776665431 22333444455667777877777654332 2233455667777788899988888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN 526 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 526 (701)
|.++- .....+.+|.+.|+++.|.++-+++.........|+..+.-+-..|.+.+|.++|-.. ..|+
T Consensus 788 f~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti--~~p~--- 854 (1636)
T KOG3616|consen 788 FTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI--GEPD--- 854 (1636)
T ss_pred HHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc--cCch---
Confidence 87642 2334566777888998888887776533222556666666677788888877766332 1122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
...++|.+.|..+..+.+.++- .|+. .+.+..++.-+.. .|+...|...|-++-. |.....+
T Consensus 855 ---~aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~---~g~lkaae~~flea~d--------~kaavnm 917 (1636)
T KOG3616|consen 855 ---KAIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEA---EGDLKAAEEHFLEAGD--------FKAAVNM 917 (1636)
T ss_pred ---HHHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHh---ccChhHHHHHHHhhhh--------HHHHHHH
Confidence 2234566666666666555442 4443 4556777777777 7888888777765532 2333333
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHH-------------------HHhcCCCccchhHHHHH--HHhcCCC
Q 040951 606 ESKHGNKKEADSFIAKALQKCPNSG-----ILWAE-------------------LIKMVPHHDRKSKGKDA--LVKSDRD 659 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~p~~~-----~l~~~-------------------~~~~~~~~~~~~~~~~a--l~~~p~~ 659 (701)
|...+-+++|..+-.. .-..+. .+|.. .+.+.........+.+. +.....-
T Consensus 918 yk~s~lw~dayriakt---egg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~ 994 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKM 994 (1636)
T ss_pred hhhhhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccC
Confidence 4333333333222110 000000 12211 11111112222222221 2222345
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
++++..++..+...|++++|-+.|-.|++++.-|
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 8899999999999999999999999999988643
No 165
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=1.3e-05 Score=74.96 Aligned_cols=252 Identities=12% Similarity=-0.001 Sum_probs=166.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 040951 366 CKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARD 445 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 445 (701)
++-.|+|..++..-++.-... .....-..+.+.|...|.+...+.-.... ......+...++.+...-++.+.-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 355788888877666554332 56666666777777777765443332221 12233455666666666666555555
Q ss_pred HHHHHH-HhCCCCH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC
Q 040951 446 ILQEAY-ATIPNSE-EIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPS 523 (701)
Q Consensus 446 ~l~~a~-~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 523 (701)
-+.+.+ ...-.+. ......+.++...+++++|.+..... .+-++...-..++.+..+.+-|.+.++++.+.+-+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 444433 3333333 34445677888888999988877662 22445555566777778888888888888776554
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 524 FFNLWLMLGQLEER----LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 524 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
.....+++.+.. .+.+..|.-+|+..-..+|..+.+....+.+... +|++++|..+++.++..++++|+.+
T Consensus 170 --~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~---~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 170 --ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ---LGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred --HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH---hcCHHHHHHHHHHHHhccCCCHHHH
Confidence 445555555432 3567788888888887788888888888888888 8888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHHhCCCCH
Q 040951 600 LATIRAESKHGNKKEA-DSFIAKALQKCPNSG 630 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~ 630 (701)
.++..+-...|...++ ...+.+....+|+++
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 8888877777776544 344555556666653
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.71 E-value=3.3e-07 Score=91.93 Aligned_cols=143 Identities=17% Similarity=0.100 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC------CHHHHHHHHHHHhhhccC-CCHHHHHHHHHHHHHhCC--CC--
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPN------CIPLWYSLANLEEKRNGL-NGLSKARAVLSVARLKNP--LN-- 595 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~-g~~~~A~~~~~~a~~~~p--~~-- 595 (701)
.+...+.++... ++++|+..|++++...-. -..++..+|.++.. . |++++|+..|++|..... +.
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~---~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE---QLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC---TT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 334444444433 666777777766654211 14457778888888 8 899999999999988652 22
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhc
Q 040951 596 --PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHD 673 (701)
Q Consensus 596 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~ 673 (701)
..++..++.++.+.|++++|+.+|++....+-+++..-. +-...++..+.++...
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~-----------------------~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY-----------------------SAKEYFLKAILCHLAM 209 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH-----------------------HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch-----------------------hHHHHHHHHHHHHHHc
Confidence 257788999999999999999999999887644221000 0134566778888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCccc
Q 040951 674 RKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 674 g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
|++..|...|++....+|.+.++
T Consensus 210 ~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 210 GDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp T-HHHHHHHHHHHGTTSTTSTTS
T ss_pred CCHHHHHHHHHHHHhhCCCCCCc
Confidence 99999999999999999987653
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.67 E-value=8.8e-08 Score=72.30 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=27.3
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC 558 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 558 (701)
|..+...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|+++++..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3444444444444444444444444444444444444444444444444444444444443
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=1.2e-06 Score=94.35 Aligned_cols=120 Identities=13% Similarity=-0.016 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhh--CCCCHHHHHHHHHHHhhhccCC
Q 040951 507 NAEERGFIEEGLKRFPSFFNLWLMLGQLEERL--------GHLKEAKEAYQSGCNQ--CPNCIPLWYSLANLEEKRNGLN 576 (701)
Q Consensus 507 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~g 576 (701)
...|+.+|+++++.+|++..++..++.++... .+...+.+..++++.. .|.++.++..++..... .|
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~---~g 434 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV---KG 434 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh---cC
Confidence 56777777777777777777777666655432 1234555555555553 66667778888888777 88
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 577 GLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
++++|...|++|+..+| +...|..+|.++...|++++|...|++|+.++|.++
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888 467888888888888888888888888888888776
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.67 E-value=6.2e-07 Score=82.53 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 567 (701)
...|+.+|.++...|++++|+..|.+++...|++ +.++..+|.++...|++++|+..|++++...|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4555666666666666666666666666665542 2356666666666677777777776666666666666666666
Q ss_pred HHh
Q 040951 568 LEE 570 (701)
Q Consensus 568 ~~~ 570 (701)
++.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 665
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=9e-07 Score=86.54 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=64.0
Q ss_pred HHHHHHHHHHH-HHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHH
Q 040951 491 ERVWMKSAIVE-RELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWY 563 (701)
Q Consensus 491 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 563 (701)
...++..+..+ ...|++++|+..|+..++.+|++ +.+++.+|.+|...|++++|+..|+++++.+|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444433 34566666666666666666665 3566666666666666666666666666665553 55566
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
.+|.++.. .|++++|+..|+++++..|++.
T Consensus 222 klg~~~~~---~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQD---KGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHHHCcCCH
Confidence 66666666 6666666666666666666654
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.66 E-value=9.5e-07 Score=81.57 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 388 TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA---EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAA 464 (701)
Q Consensus 388 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~l 464 (701)
.....++.+|..+...|++++|...|++++...|+. ..++..+|.++...|++++|+..+.+++...|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 445567888888888888888888888888776543 45788888888888888888888888888888888888888
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 465 FKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
+.++...|+...+...++.++. .+.+|++++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~-------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA-------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH-------------------HHHHHHHHHHHHHhhCchh
Confidence 8888887777766655554432 2566777777777777765
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.66 E-value=1.1e-07 Score=71.86 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=32.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 531 LGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 531 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
+|..+...|++++|+..|+++++..|+++.+|..+|.++.. .|++++|+..|++++..+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ---QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcCC
Confidence 44555555555555555555555555555555555555555 555555555555555555554
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.65 E-value=1.4e-07 Score=72.22 Aligned_cols=66 Identities=26% Similarity=0.318 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCC-CHHHHHHHHHHHHHhCC
Q 040951 525 FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN-GLSKARAVLSVARLKNP 593 (701)
Q Consensus 525 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g-~~~~A~~~~~~a~~~~p 593 (701)
+..|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++.. .| ++.+|+..++++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK---LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHcCc
Confidence 34444555555555555555555555555555555555555555554 44 34555555555554444
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.65 E-value=1.1e-06 Score=85.99 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=72.6
Q ss_pred HHHHHHHHHHH-HHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHH
Q 040951 458 EEIWLAAFKLE-FENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWL 529 (701)
Q Consensus 458 ~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 529 (701)
...++..+..+ ...|++++|+..|+.++..+|+ +.+++.+|.++...|+++.|+..|.+++..+|++ +.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444433 4557777777777777777766 4677777777777777777777777777777664 56777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH
Q 040951 530 MLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL 561 (701)
Q Consensus 530 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 561 (701)
.+|.++...|++++|+.+|+++++.+|++..+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 77777777777777777777777777776543
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=8.5e-07 Score=81.62 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhccCCCHHH
Q 040951 506 NNAEERGFIEEGLKRFPSF--FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNGLNGLSK 580 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~g~~~~ 580 (701)
.+..+...+...++..+.+ ...++.+|.++...|++++|...|++++...|++ +.+|..+|.++.. .|++++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~---~g~~~e 90 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS---NGEHTK 90 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH---cCCHHH
Confidence 3455555665555555554 6678999999999999999999999999887764 4589999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHHH
Q 040951 581 ARAVLSVARLKNPLNPEIWLATIRAES-------KHGNKKEADSFIAKAL 623 (701)
Q Consensus 581 A~~~~~~a~~~~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~al 623 (701)
|+..+++++..+|.....+..++.++. ..|+++.|...+.+++
T Consensus 91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999998888888888 7778775555544443
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=98.64 E-value=1.4e-06 Score=88.86 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 040951 371 SIETARAIFSHAC---TVFLTKKSIWLKAAQLEKTH---------GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438 (701)
Q Consensus 371 ~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g 438 (701)
..+.|..+|.+++ ..+|+...++-.++.++... .+..+|....+++++.+|.++.+...+|.+.+..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4578899999999 89999999988888877643 24567888999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--HHHHHHH-HHHHHHhCChHHHHHHHH
Q 040951 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT--ERVWMKS-AIVERELGNNAEERGFIE 515 (701)
Q Consensus 439 ~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~-a~~~~~~g~~~~A~~~~~ 515 (701)
+++.|...|++++..+|++..+|...+.+..-.|+.++|...++++++..|. .....++ ...| .....+.|+.+|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY-VPNPLKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH-cCCchhhhHHHHh
Confidence 9999999999999999999999999999999999999999999999999998 2222222 2233 3455677777775
Q ss_pred HH
Q 040951 516 EG 517 (701)
Q Consensus 516 ~a 517 (701)
+-
T Consensus 432 ~~ 433 (458)
T PRK11906 432 KE 433 (458)
T ss_pred hc
Confidence 53
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.63 E-value=1.7e-06 Score=93.18 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhc--CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 475 ERARMLLAKARDM--GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 475 ~~A~~~~~~a~~~--~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
..+.....+++.. .|. +.++..++......|++++|...+++++.++|+ ...|..+|.++...|++++|.+.|+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555553 333 667777777777778888888888888888884 678888888888888888888888888
Q ss_pred hhhCCCCHH
Q 040951 552 CNQCPNCIP 560 (701)
Q Consensus 552 l~~~p~~~~ 560 (701)
+.++|.++.
T Consensus 480 ~~L~P~~pt 488 (517)
T PRK10153 480 FNLRPGENT 488 (517)
T ss_pred HhcCCCCch
Confidence 888887754
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=1.8e-07 Score=74.78 Aligned_cols=81 Identities=22% Similarity=0.197 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 369 RGSIETARAIFSHACTVFLT--KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 369 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
+|+++.|+.+|+++++..|. +...|+.+|.++.+.|++++|..++++ ...+|.+....+.+|.++...|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666666663 344566666666666666666666666 555555656666666666666666666666
Q ss_pred HHHH
Q 040951 447 LQEA 450 (701)
Q Consensus 447 l~~a 450 (701)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6553
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.59 E-value=0.00019 Score=78.18 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=148.6
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
...+++.+|.+-..+.++.+|+...+...-|-...+.|..++|..+++..-...+++....-.+-.+|...|..++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 56788999999999999999999888888888889999999999888777666777777888888899999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChH---------HHHHHHH
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT--ERVWMKSAIVERELGNNA---------EERGFIE 515 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~---------~A~~~~~ 515 (701)
|+++...+|+ .+....+...|.+.+.|.+-.+.--+.-+..|. --.|.....+.......+ -|...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999998 888888888888888887777766666667777 333433333332222222 2333444
Q ss_pred HHHHhC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-Hhhh-CCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 516 EGLKRF-PSF-FNLWLMLGQLEERLGHLKEAKEAYQS-GCNQ-CPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 516 ~al~~~-p~~-~~~~~~la~~~~~~~~~~~A~~~~~~-al~~-~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
+.++.. +-. ..=...+-.+...+|++++|.+++.. .... .+.+..+-..-..++.. .+++.+-.++..+++..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~---l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL---LNRWQELFELSSRLLEK 255 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH---hcChHHHHHHHHHHHHh
Confidence 444443 111 11112222334455666666666522 1222 22233333344445555 55666666666666666
Q ss_pred CCCC
Q 040951 592 NPLN 595 (701)
Q Consensus 592 ~p~~ 595 (701)
.+++
T Consensus 256 ~~Dd 259 (932)
T KOG2053|consen 256 GNDD 259 (932)
T ss_pred CCcc
Confidence 6555
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=98.59 E-value=4.6e-06 Score=85.20 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=72.7
Q ss_pred HHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcH
Q 040951 407 ESLIALLRKAV---TYFPQAEVLWLMGAKEKWLA---------GDVPAARDILQEAYATIPNSEEIWLAAFKLEFENREL 474 (701)
Q Consensus 407 ~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~ 474 (701)
+.|..+|.+++ ..+|....++..++.+++.. .+..+|....+++++.+|.++.+...+|.+....+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 45666777777 66777777777776666542 1234555566666666666666666666666556666
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 475 ERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 475 ~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
+.|...|++++..+|+ +.+|+..|.+....|+.++|+..++++++++|.-
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 6666666666666665 5666666666666666666666666666666653
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.58 E-value=1.5e-06 Score=89.36 Aligned_cols=118 Identities=21% Similarity=0.187 Sum_probs=67.6
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 040951 464 AFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 543 (701)
+..++...++++.|+.+|++..+..|+ +...++.++...++..+|++++.+++...|.+..++...+..+...++++.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 444444455566666666665555543 333345555555555566666666666666555555555666666666666
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHH
Q 040951 544 AKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLS 586 (701)
Q Consensus 544 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~ 586 (701)
|..+.++++...|.+...|..++.+|.. .|+++.|+..+.
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~---~~d~e~ALlaLN 292 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQ---LGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHh---cCCHHHHHHHHh
Confidence 6666666666666666666666666666 666666655544
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=1.9e-06 Score=88.67 Aligned_cols=120 Identities=14% Similarity=0.031 Sum_probs=109.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcc
Q 040951 495 MKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574 (701)
Q Consensus 495 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 574 (701)
-.+..+....++++.|+.+|++..+.+|+ ....++.++...++..+|++++.++++..|.+..++...+.++..
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~--- 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS--- 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---
Confidence 33455556678999999999999998876 566689999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
.++++.|+.+.++++...|.+...|..++.+|...|+++.|+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999997655
No 183
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.55 E-value=2.2e-07 Score=74.19 Aligned_cols=79 Identities=25% Similarity=0.177 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 505 GNNAEERGFIEEGLKRFPS--FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 505 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
|+++.|+.++++++...|. +...++.+|.++.+.|++++|..++++ .+..|.++...+.+|.++.. .|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~---l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK---LGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH---TT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH---hCCHHHHH
Confidence 4444444444444444442 233344444444444444444444444 34444444444444444444 44444444
Q ss_pred HHHHH
Q 040951 583 AVLSV 587 (701)
Q Consensus 583 ~~~~~ 587 (701)
..|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 44443
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.54 E-value=2.4e-05 Score=73.66 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKA 679 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 679 (701)
...+++|.+.|.+..|..-++.+++..|+. +.-.+.+..+...|...|-.++|
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t---------------------------~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDT---------------------------SAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccc---------------------------cchHHHHHHHHHHHHHhCChHHH
Confidence 456788999999999999999999998864 22356677788888899998888
Q ss_pred HHHHHHHHHhCCCC
Q 040951 680 RNWFNKAVSLDPDT 693 (701)
Q Consensus 680 ~~~~~~al~~~p~~ 693 (701)
...-.-.-...|++
T Consensus 224 ~~~~~vl~~N~p~s 237 (254)
T COG4105 224 KKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcCCCC
Confidence 87644333333443
No 185
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=5.6e-05 Score=70.82 Aligned_cols=230 Identities=13% Similarity=0.018 Sum_probs=156.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH
Q 040951 400 EKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARM 479 (701)
Q Consensus 400 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 479 (701)
+.-.|+|..++..-++.-.. +.....-..+++.|...|.+...+.-....- .| ...+...++.+...-++.+.-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~-~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK--AT-PLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc--CC-hHHHHHHHHHHhhCcchhHHHHH
Confidence 34467887777666655433 2566666677777777887655443333221 11 23344455555544444444443
Q ss_pred HH-HHHHhcCCC-H-HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC
Q 040951 480 LL-AKARDMGGT-E-RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556 (701)
Q Consensus 480 ~~-~~a~~~~p~-~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 556 (701)
-+ +........ . -.....+.++...|++++|....... .+.++...-.+++.+..+++-|...++++...+.
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 33 333333222 3 34444477789999999999887763 3467777888899999999999999999988766
Q ss_pred CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAEL 636 (701)
Q Consensus 557 ~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~ 636 (701)
+..-..+.-+++-.. .+.+.+..|.-+|+..-.+.|..+.+....+.+....|++++|..+++.++...++++....+.
T Consensus 169 d~tLtQLA~awv~la-~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLA-TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 543222222222221 0145799999999999998999999999999999999999999999999999999998888876
Q ss_pred Hhc
Q 040951 637 IKM 639 (701)
Q Consensus 637 ~~~ 639 (701)
+-.
T Consensus 248 iv~ 250 (299)
T KOG3081|consen 248 IVL 250 (299)
T ss_pred HHH
Confidence 643
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.6e-06 Score=86.30 Aligned_cols=100 Identities=21% Similarity=0.141 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
.++.+++.++.+++++..|+....++|...|+++.+.++.|+++.. .|+++.|+..|+++++..|.|-.+...++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~---~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA---LGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh---hccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888888888 8888888888888888888888888887777
Q ss_pred HHhcCCHHH-HHHHHHHHHHhCCC
Q 040951 606 ESKHGNKKE-ADSFIAKALQKCPN 628 (701)
Q Consensus 606 ~~~~g~~~~-A~~~~~~al~~~p~ 628 (701)
-.+...+.. ..++|.+++...+.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 666555443 36777777776653
No 187
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=1.7e-05 Score=71.59 Aligned_cols=191 Identities=13% Similarity=0.087 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN 471 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~ 471 (701)
.++..+.+|-..|-..-|+--|.+++.+.|.-+.++..+|-.+...|+++.|.+.|+..++.+|...-+.+..+..+.--
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 34444555566666677777777788888888888877887777788888888888888888887777777777666667
Q ss_pred CcHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040951 472 RELERARMLLAKARDMGGT---ERVWMKSAIVERELGNNAEERGFI-EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEA 547 (701)
Q Consensus 472 ~~~~~A~~~~~~a~~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 547 (701)
|++.-|.+-+.+.-...|+ ...|..+. ...-++.+|..-+ +++-+.+.+. --|. +.+.|. |+..+ ...
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~-WG~~-iV~~yL--gkiS~-e~l 218 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQ-WGWN-IVEFYL--GKISE-ETL 218 (297)
T ss_pred CchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhh-hhHH-HHHHHH--hhccH-HHH
Confidence 7777777777777776666 23333322 2334556665544 3333332221 1111 111111 11111 122
Q ss_pred HHHHhhhCCCC-------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 548 YQSGCNQCPNC-------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 548 ~~~al~~~p~~-------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
++++.....++ .+.++.+|..+.. .|+.++|..+|+-++..+-
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~---~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLS---LGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHhH
Confidence 22222222222 3456777777777 7888888888777776554
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.50 E-value=3.2e-05 Score=72.83 Aligned_cols=187 Identities=13% Similarity=0.001 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHH
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN---SEEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWM 495 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~ 495 (701)
.+..|+.-|......|++++|...|+.+....|. ...+.+.++..+.+.++++.|+...++.+..+|+ +-+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3556777777777888888888888888877766 3457777888888888888888888888887776 44555
Q ss_pred HHHHHHHHh-----CC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 040951 496 KSAIVEREL-----GN---NAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567 (701)
Q Consensus 496 ~~a~~~~~~-----g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 567 (701)
..|..+... .| ...|+..|+..+..+|++.-.--....+ ..+...+ ...-...++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~L------A~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDAL------AGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHHH------HHHHHHHHH
Confidence 555554322 11 2346666677777777753211111111 0000000 122345667
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 568 LEEKRNGLNGLSKARAVLSVARLKNPLNP---EIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 568 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
+|.+ .|.+..|..-++.+++..|+.+ +.+..+...|...|-.++|...-.-.-...|++
T Consensus 176 yY~k---r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 176 YYLK---RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHH---hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 7777 8888888888888888776554 566666777788888887776544333334444
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.48 E-value=4.8e-07 Score=68.95 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=38.7
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 567 (701)
..|++++|+..|++++..+|++..+++.++.++...|++++|...+++++...|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45566666666666666666666666666666666666666666666666666665555554443
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.48 E-value=5.1e-07 Score=68.84 Aligned_cols=66 Identities=18% Similarity=0.118 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAK 432 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 432 (701)
...|++++|+..|++++..+|++..+++.++.++...|++++|..++++++..+|+++.++..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666666554
No 191
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3e-06 Score=84.40 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=103.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLT----K-----------KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLW 427 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 427 (701)
+..+++.|+|..|...|++++...+. + ..++++++.++.+.+.+..|+..+.++|...|+|..+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34568999999999999998876431 1 12677888899999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-HHHHHHHHHhcCC
Q 040951 428 LMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELER-ARMLLAKARDMGG 489 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~a~~~~p 489 (701)
+..|+++...|+++.|+..|+++++..|+|..+...+..+-....++.. ..++|..++...+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999998888888887766655544 4777777776443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=98.47 E-value=3.6e-06 Score=73.83 Aligned_cols=101 Identities=13% Similarity=-0.030 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAF 465 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la 465 (701)
.++..+..+.+|.-....|++++|..+|+-....+|.++..|+.+|-++...+++++|+..|..+....++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 33444455556666666677777777777666667767777777777776677777777777777666666666666677
Q ss_pred HHHHHcCcHHHHHHHHHHHHh
Q 040951 466 KLEFENRELERARMLLAKARD 486 (701)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~a~~ 486 (701)
.++...|+.+.|+..|+.++.
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 777777777777777666665
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.45 E-value=3.2e-05 Score=68.19 Aligned_cols=146 Identities=17% Similarity=0.109 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 473 ELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLK-RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 473 ~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
++++...-..+.+...|+..-.+.++....+.|++.+|...|++++. .+.+++.++..+++.....+++..|...++..
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34444444445555566666666677777777777777777777665 45666777777777777777777777777777
Q ss_pred hhhCCC--CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 552 CNQCPN--CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 552 l~~~p~--~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
.+.+|. ++...+.+++.+.. .|.+..|...|+.++...|. +..-..++.++..+|+..+|..-+...
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa---~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAA---QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHh---cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 776665 35666777777777 77777777777777777664 355566677777777666555544433
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=98.45 E-value=4e-06 Score=73.54 Aligned_cols=101 Identities=11% Similarity=-0.054 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
-...+.+|.-....|++++|..+|.-..-.+|.+++.|+.+|-++...+++++|+..|..+....++++...+..|.++.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 34455666666777888888888877777778778888888888888888888888888877777777777777888888
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
. .|+...|+..|+.++. .|.+
T Consensus 117 ~---l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 117 L---MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred H---hCCHHHHHHHHHHHHh-Ccch
Confidence 7 7888888888877777 3444
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.45 E-value=3.1e-05 Score=68.29 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=120.4
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hCCCCHHHHHHHHHHHhhhccCCCHHH
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN-QCPNCIPLWYSLANLEEKRNGLNGLSK 580 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~g~~~~ 580 (701)
.+.=|++....-..+.+...|. ..-.+.++......|++.+|+..|++++. .+.+++.+.+.+++.... .+++..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa---~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA---IQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh---hccHHH
Confidence 3444566666666666777777 56678899999999999999999999987 567788999999999999 999999
Q ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCC
Q 040951 581 ARAVLSVARLKNP--LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDR 658 (701)
Q Consensus 581 A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~ 658 (701)
|...+++..+.+| .+|+..+.+++.+...|.+.+|...|+.++...|.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg------------------------------ 192 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG------------------------------ 192 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC------------------------------
Confidence 9999999999998 46788899999999999999999999999999995
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHH
Q 040951 659 DPHVFAAVAKLFWHDRKVDKARNW 682 (701)
Q Consensus 659 ~~~~~~~lg~~~~~~g~~~~A~~~ 682 (701)
++....++..+.++|+.++|..-
T Consensus 193 -~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 193 -PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred -HHHHHHHHHHHHHhcchhHHHHH
Confidence 66666666666677765555443
No 196
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.45 E-value=5e-06 Score=84.69 Aligned_cols=152 Identities=13% Similarity=0.207 Sum_probs=92.1
Q ss_pred HHHHHHhhhCCCCHHHHHHHHhhcC----------------cchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHHHH
Q 040951 173 KLITKGCNMCPKNEDVWLEACRLAR----------------PDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKANKS 233 (701)
Q Consensus 173 ~~~~~~~~~~P~~~~~wl~~~~l~~----------------~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~a~ 233 (701)
.-+.+.++.+|.+++.||+.+.+.. .+....+|++||++||+++.||+.+.+... +.+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4466777888888888888887631 013446677777777777777766665443 455556
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhc-------CHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCC
Q 040951 234 RVLRMALDEIPDSVRLWKALVEIS-------SEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKE 306 (701)
Q Consensus 234 ~~l~kal~~~P~~~~l~~~~~~l~-------~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~ 306 (701)
+.+++++..+|+++.||..|+... .++..+.+|.+++........-. ........... . .-
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~--~~~~~~~~~~e---~-------~~ 153 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR--MTSHPDLPELE---E-------FM 153 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc--cccccchhhHH---H-------HH
Confidence 667777777777777777766543 45666666666654432210000 00000000000 0 01
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 040951 307 RAIWIAAAKLEEANGNTSMVGKIIERGIRA 336 (701)
Q Consensus 307 ~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~ 336 (701)
..+...++.+..+.|..+.|..+++-.++.
T Consensus 154 l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 154 LYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 345667788888999999999999999885
No 197
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=7.9e-06 Score=69.08 Aligned_cols=94 Identities=20% Similarity=0.091 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC---CHHHHHHHH
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN---CIPLWYSLA 566 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la 566 (701)
+++..+..+...|+.++|+.+|++++...+.. ..+++.+|..+...|++++|..++++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34444555555555555555555555543322 334555555555555555555555555555554 444444455
Q ss_pred HHHhhhccCCCHHHHHHHHHHHH
Q 040951 567 NLEEKRNGLNGLSKARAVLSVAR 589 (701)
Q Consensus 567 ~~~~~~~~~g~~~~A~~~~~~a~ 589 (701)
..+.. .|+.++|+..+-.++
T Consensus 83 l~L~~---~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYN---LGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHH---CCCHHHHHHHHHHHH
Confidence 55555 555555555554444
No 198
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.41 E-value=0.00013 Score=71.11 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------H
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA-----EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSE------E 459 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~------~ 459 (701)
.++..++..+...-++.+++.+-...+...... ......++..+...+.++++++.|+.+++...++. .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 466777777777777777777776666542222 25667788888888999999999999998754322 3
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC------C
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT-----------ERVWMKSAIVERELGNNAEERGFIEEGLKRF------P 522 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p 522 (701)
++..++.++....++++|.-...++.++..+ .-+.+.++..++..|....|.++.+++.++. |
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6778999999999999999999888875432 2355666777889999999999999887653 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC------CHHHHHHHHHHHhhhccCCCH-----HHHHHHHHHHHHh
Q 040951 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN------CIPLWYSLANLEEKRNGLNGL-----SKARAVLSVARLK 591 (701)
Q Consensus 523 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~g~~-----~~A~~~~~~a~~~ 591 (701)
-.......+|.||...|+.+.|..-|+.+...-.. ...+....+..... ..-. =+|+++-+++++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~---~r~~~k~~~Crale~n~r~lev 320 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET---LRLQNKICNCRALEFNTRLLEV 320 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHhhcccccchhHHHHHHHHH
Confidence 23556778899999999999999999998764321 13334444444433 2222 2366666666654
Q ss_pred CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 592 NPLN------PEIWLATIRAESKHGNKKEADSFIAKALQ 624 (701)
Q Consensus 592 ~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 624 (701)
...- -.+...++.+|...|.-++-...+.++-+
T Consensus 321 A~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 321 ASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3221 14567788888888877776666666543
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=8.2e-06 Score=77.59 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=43.2
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 040951 465 FKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEER 537 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 537 (701)
+.-++..|+|..|...|...++..|+ +.+++.+|.+++.+|+++.|...|..+++.+|++ ++.++.+|.+..+
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 33333444444444444444444443 4444444444444444444444444444444432 3344444444444
Q ss_pred cCCHHHHHHHHHHHhhhCCCCH
Q 040951 538 LGHLKEAKEAYQSGCNQCPNCI 559 (701)
Q Consensus 538 ~~~~~~A~~~~~~al~~~p~~~ 559 (701)
+|+.++|+.+|+++++.+|...
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCH
Confidence 4444444444444444444443
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=8.9e-06 Score=77.34 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=62.6
Q ss_pred HHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhcc
Q 040951 501 ERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNG 574 (701)
Q Consensus 501 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~ 574 (701)
+...|+|..|...|...++.+|++ +.+++.||+++..+|+++.|...|..+++..|++ ++.++.+|.+...
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~--- 227 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR--- 227 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH---
Confidence 445566666666666666666664 5566666666666666666666666666655554 5566666666666
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
.|+.++|...|+++++..|+.+..-.
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 66666666666666666666654433
No 201
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.36 E-value=0.00018 Score=70.19 Aligned_cols=223 Identities=10% Similarity=-0.006 Sum_probs=160.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHh----CC--CcHHHHHHHHHHHHHc
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWL---KAAQLEKTHGSRESLIALLRKAVTY----FP--QAEVLWLMGAKEKWLA 437 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~~a~~~~~~ 437 (701)
....++++|+..+.+.+..-.+...-+. .+.......|.++++...--..+.. .. .-..+++.+++.+...
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888876554443333 3345566677777665443332222 11 1235677888888888
Q ss_pred CChHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhC
Q 040951 438 GDVPAARDILQEAYATIPN-----SEEIWLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELG 505 (701)
Q Consensus 438 g~~~~A~~~l~~a~~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g 505 (701)
.++.+++.+-...+..-.. .....+.++..+...+.++++++.|+.+++.... -.++..++.++....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 8888888887776665322 2346677888899999999999999999985422 578899999999999
Q ss_pred ChHHHHHHHHHHHHhCCC----CH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhC------CCCHHHHHHHHHHH
Q 040951 506 NNAEERGFIEEGLKRFPS----FF------NLWLMLGQLEERLGHLKEAKEAYQSGCNQC------PNCIPLWYSLANLE 569 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~----~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 569 (701)
|+++|.-+..++..+..+ +. -..+.++..+..+|..-.|.+..+++.++. |-.......++++|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999998888776432 22 245566667788899999999998887642 22355678899999
Q ss_pred hhhccCCCHHHHHHHHHHHHHhC
Q 040951 570 EKRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
.. .|+.+.|..-|++|....
T Consensus 257 R~---~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 257 RS---RGDLERAFRRYEQAMGTM 276 (518)
T ss_pred Hh---cccHhHHHHHHHHHHHHH
Confidence 99 999999999999987654
No 202
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0031 Score=69.54 Aligned_cols=193 Identities=14% Similarity=0.070 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHH---
Q 040951 389 KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN---SEEIWL--- 462 (701)
Q Consensus 389 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~---~~~~~~--- 462 (701)
.+.+|..+|....+.|...+|++.|-++ +++..+........+.|.+++-+.++..+.+.... +.++.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 3455666665555555555555555443 34444555555555555555555555555444321 111111
Q ss_pred ---------------------HHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 463 ---------------------AAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 463 ---------------------~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
..|.-+...+.|+.|.-+|... .-|..++..+...|+|..|...-+++
T Consensus 1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD~aRKA---- 1246 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVDAARKA---- 1246 (1666)
T ss_pred HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 2222333333333333333221 12334444444445555554444433
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC----CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHH
Q 040951 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN----CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPE 597 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 597 (701)
++.+.|-..+..+...+.+.-|. .|.- +.+-.-.+...|.. .|-+++-+.+++.++-....+-.
T Consensus 1247 -ns~ktWK~VcfaCvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~---rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1247 -NSTKTWKEVCFACVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQD---RGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred -cchhHHHHHHHHHhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHh---cCcHHHHHHHHHhhhchhHHHHH
Confidence 33444544444444433332221 1221 12334455566666 77777777777777766655556
Q ss_pred HHHHHHHHHHhc
Q 040951 598 IWLATIRAESKH 609 (701)
Q Consensus 598 ~~~~l~~~~~~~ 609 (701)
.+..++-+|.+-
T Consensus 1315 mfTELaiLYsky 1326 (1666)
T KOG0985|consen 1315 MFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHhc
Confidence 666666666544
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.34 E-value=2.8e-06 Score=65.71 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHH
Q 040951 500 VERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWY 563 (701)
Q Consensus 500 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 563 (701)
++...++++.|+.++++++..+|+++.+|..+|.++...|++.+|...|+++++.+|+++....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4445555555555555555555555555555555555555555555555555555555544433
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.30 E-value=1.7e-05 Score=67.06 Aligned_cols=93 Identities=26% Similarity=0.199 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS---FFNLWLMLG 532 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 532 (701)
+++.++..+-..|+.++|+.+|++++....+ .++++.++..+...|++++|+.++++++..+|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4555666666666666666666666664332 456666666666667777777777766666666 555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHh
Q 040951 533 QLEERLGHLKEAKEAYQSGC 552 (701)
Q Consensus 533 ~~~~~~~~~~~A~~~~~~al 552 (701)
.++...|+.++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66666677777666665554
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.30 E-value=4e-06 Score=64.88 Aligned_cols=65 Identities=22% Similarity=0.174 Sum_probs=38.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 533 QLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 533 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
.+|...+++++|++++++++..+|+++.+|..+|.++.. .|++.+|+..|+++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ---LGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH---hccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 455556666666666666666666666666666666666 66666666666666666665554433
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.26 E-value=3.6e-05 Score=66.10 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
.+..-|.-....|+|++|++.|+.+....|. ..+.+.++..+...|+++.|+..+++.++++|.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3444444444555555555555555554443 4444455555555555555555555555555544
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.21 E-value=5.3e-05 Score=65.11 Aligned_cols=67 Identities=24% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQ---AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSE 458 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~ 458 (701)
.++.-|.-.++.|++++|++.|+.+....|. ...+.+.++..+...+++++|+..+++.++++|.++
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 4444455555555555555555555555443 234445555555555555555555555555555443
No 208
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.01 Score=60.59 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=135.5
Q ss_pred cCcHHHHHHHHHHHHhcC---CC----HHHH--------HHHHHHHHHhCChHHHHHHHHHHHHh---CCC-------CH
Q 040951 471 NRELERARMLLAKARDMG---GT----ERVW--------MKSAIVERELGNNAEERGFIEEGLKR---FPS-------FF 525 (701)
Q Consensus 471 ~~~~~~A~~~~~~a~~~~---p~----~~~~--------~~~a~~~~~~g~~~~A~~~~~~al~~---~p~-------~~ 525 (701)
.|-+++|.++-++++... +. .++. -..+.+..-.|++.+|++-...+... .|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 466788888888777532 11 2222 12233445679999999888777654 354 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC-C--HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC--C-----
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN-C--IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL--N----- 595 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~----- 595 (701)
.+++.+|......+-++.|...|..+.+.... + ..+-..+|..|.+ .|+.+.-.+.++..--.+.. +
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~---~~~~ed~y~~ld~i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR---IGDAEDLYKALDLIGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH---hccHHHHHHHHHhcCCCCCCcchHHHHH
Confidence 57888888888999999999999999886443 2 3345678888888 77776665555553222111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 040951 596 PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRK 675 (701)
Q Consensus 596 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 675 (701)
..+++..|-+....+++.+|...+.+.++...... . .++ .+..+..+|.++...|+
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~-------------------~rL---~a~~LvLLs~v~lslgn 500 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--L-------------------NRL---TACSLVLLSHVFLSLGN 500 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--H-------------------HHH---HHHHHHHHHHHHHHhcc
Confidence 24677788888999999999999999998763211 1 111 15566778888888888
Q ss_pred HHHHHHHHHHHHHhCCCCccc
Q 040951 676 VDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 676 ~~~A~~~~~~al~~~p~~~d~ 696 (701)
..++++...-++++....+|.
T Consensus 501 ~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 501 TVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred hHHHHhccchHHHHHhcCCCc
Confidence 888888888887776555544
No 209
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.19 E-value=1.6e-06 Score=83.41 Aligned_cols=225 Identities=11% Similarity=-0.022 Sum_probs=157.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~ 442 (701)
+..|+.+|.|++|+.+|.+++..+|.|+..+...+..|.+...+..|..-+..++.++.....+|...+..-...|...+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 45679999999999999999999999999999999999999999999999999999988888888888888888999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CCC----HHH--HHHHHHHHHHhCChHHHHHHHH
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDM-GGT----ERV--WMKSAIVERELGNNAEERGFIE 515 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~p~----~~~--~~~~a~~~~~~g~~~~A~~~~~ 515 (701)
|.+-++.++.+.|++.++.-.++.+-. ..++ ++..++..- .|. ... .-..|..+...|.++.++.++-
T Consensus 184 AKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~-~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~ 258 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIELKKSLARINS----LRER-KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVV 258 (536)
T ss_pred HHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh-hHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEee
Confidence 999999999999998776655554432 1111 111111100 000 011 1122444556677777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 516 EGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
+.+.....+..+-.. +..+....+++.++.-.-+++...|........-+....- .|...++...++.++...|.+
T Consensus 259 ~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~---~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 259 SPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETI---AKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred ccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHH---HhhhhhcCcchhheeeecccc
Confidence 666555444333333 4556666777777777777666666544443333444444 566677777778877777765
Q ss_pred H
Q 040951 596 P 596 (701)
Q Consensus 596 ~ 596 (701)
.
T Consensus 335 ~ 335 (536)
T KOG4648|consen 335 E 335 (536)
T ss_pred c
Confidence 4
No 210
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00073 Score=68.60 Aligned_cols=323 Identities=16% Similarity=0.129 Sum_probs=198.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HhhcC---cccCCHHHHHHHHHHHHHcCC
Q 040951 286 LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIR-ALQGE---EVVIDRDTWMKEAEIAEKAGS 361 (701)
Q Consensus 286 l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~-~~~~~---~~~~~~~~w~~~a~~~e~~~~ 361 (701)
+.+..-+..-.+.+.....+++...+.-++++...|++.+|.+.+...-- .-+.. +....--.|..++.+
T Consensus 219 ~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI------ 292 (696)
T KOG2471|consen 219 TRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI------ 292 (696)
T ss_pred HHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE------
Confidence 33444455555555555667788888999999999999999887765421 11110 001112234444433
Q ss_pred cHHHHHhcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 040951 362 DAEECKKRGSIETARAIFSHACTV---------FL---------TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423 (701)
Q Consensus 362 ~a~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 423 (701)
..+.|.|..+..+|.++++. .| ....+.+..+-.+...|++-.|.++|.+++.....+
T Consensus 293 ----h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 293 ----HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred ----eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 37888999999999999851 11 234578888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---cCChHHHHHHHHH----------------HHHhC-----CCC---HHHHHHHHHHHHHcC----
Q 040951 424 EVLWLMGAKEKWL---AGDVPAARDILQE----------------AYATI-----PNS---EEIWLAAFKLEFENR---- 472 (701)
Q Consensus 424 ~~~~~~~a~~~~~---~g~~~~A~~~l~~----------------a~~~~-----p~~---~~~~~~la~~~~~~~---- 472 (701)
|.+|+.+|.+... .|-.++......+ +++.+ |.+ +..-+.++.+..+++
T Consensus 369 PrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll 448 (696)
T KOG2471|consen 369 PRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLL 448 (696)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcC
Confidence 9999999998764 1222221111111 00000 000 001111122211111
Q ss_pred -cHHHHHHHHHHHHh-----------------------------cCCC------------HHHHHHHHHHHHHhCChHHH
Q 040951 473 -ELERARMLLAKARD-----------------------------MGGT------------ERVWMKSAIVERELGNNAEE 510 (701)
Q Consensus 473 -~~~~A~~~~~~a~~-----------------------------~~p~------------~~~~~~~a~~~~~~g~~~~A 510 (701)
+-..--..+.-+.. ..|+ ..++-..+.+....||.-.|
T Consensus 449 ~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~A 528 (696)
T KOG2471|consen 449 NEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKA 528 (696)
T ss_pred chhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhH
Confidence 00000001111100 0001 12344456667788999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHh-----------------------------hhCC
Q 040951 511 RGFIEEGLKRFPSFFNLWLMLGQLEE-----RLGHLKEAKEAYQSGC-----------------------------NQCP 556 (701)
Q Consensus 511 ~~~~~~al~~~p~~~~~~~~la~~~~-----~~~~~~~A~~~~~~al-----------------------------~~~p 556 (701)
+..-++.++. |+...++..+|.+|. .+++..+|+..+.--+ ...|
T Consensus 529 L~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~ 607 (696)
T KOG2471|consen 529 LSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTR 607 (696)
T ss_pred HHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCc
Confidence 8888887765 445667777777653 4566777666543311 0111
Q ss_pred C----C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 557 N----C-----IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP--LNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 557 ~----~-----~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
+ + ..+...++..+.- +|++++|++++..+...-| .++.+......+....|+...|...+.+.
T Consensus 608 q~~~~sv~~Ar~v~~~nLa~a~al---q~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 608 QSVFLSVEEARGVLFANLAAALAL---QGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred ccccCCHHHHhHHHHHHHHHHHHH---hcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 1 1 2347788888888 9999999999999988877 56677777777888899999999887764
No 211
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=3.7e-05 Score=68.61 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=71.4
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 466 KLEFENRELERARMLLAKARDMGGT------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLG 539 (701)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 539 (701)
.-++.+|+|++|..-|..++...|. .-+|...+.+...++.++.|+..+.++++++|.+..++...+.+|....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3344555555555555555555554 2234445666677777888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 540 HLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 540 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
.++.|++-|++++..+|....+.-..+++-.
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 8888888888888888876655555555433
No 212
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.13 E-value=0.003 Score=67.24 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHH
Q 040951 505 GNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAV 584 (701)
Q Consensus 505 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~ 584 (701)
..+.+|+.+++..-..... ...|-..++-|...|+++.|.++|.++ ....-...+|-+ .|.+..|.++
T Consensus 746 kew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k---~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGK---AGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhc---cccHHHHHHH
Confidence 3444444444433222221 234445556666667777777776654 223333445555 6777766666
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhc-C-CChH
Q 040951 585 LSVARLKNPLN-PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKS-D-RDPH 661 (701)
Q Consensus 585 ~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~-p-~~~~ 661 (701)
-++.. .|.. ..+|...+.-....|.+.+|..+|-.. ..|+ ..|.+..+.+......+.+.+. | .-.+
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 55542 2322 234555555555666666666655321 1222 1122222223333333333332 2 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 662 VFAAVAKLFWHDRKVDKARNWFNKAV 687 (701)
Q Consensus 662 ~~~~lg~~~~~~g~~~~A~~~~~~al 687 (701)
....+|.-+...|+...|...|-+|-
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh
Confidence 66778888888888888887776553
No 213
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=6e-05 Score=67.32 Aligned_cols=104 Identities=19% Similarity=0.098 Sum_probs=79.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 040951 364 EECKKRGSIETARAIFSHACTVFLTKKS-----IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG 438 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g 438 (701)
..++..|+|+.|..-|..+|...|.... ++...+.+.++.+.++.|+.-+.++++++|....+....|..|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3447888888888888888888876543 55566777778888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 439 DVPAARDILQEAYATIPNSEEIWLAAFKL 467 (701)
Q Consensus 439 ~~~~A~~~l~~a~~~~p~~~~~~~~la~~ 467 (701)
.++.|+.-|.+.++.+|....+.-..+.+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 88888888888888888765555444443
No 214
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.07 E-value=1e-05 Score=71.65 Aligned_cols=97 Identities=23% Similarity=0.233 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHH
Q 040951 578 LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNK---KEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALV 654 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~ 654 (701)
++.|++.++.....+|.+++.+...|..+..+.++ .++..+++.++.. ++.||.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK-----------------------~eeAL~ 63 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISK-----------------------FEEALK 63 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH-----------------------HHHHHh
Confidence 57788999999999999999888888877665444 4566777777654 347788
Q ss_pred hcCCChHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCcccc
Q 040951 655 KSDRDPHVFAAVAKLFWHDRK-----------VDKARNWFNKAVSLDPDTGDFW 697 (701)
Q Consensus 655 ~~p~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~d~w 697 (701)
++|+..+++..+|..|...+. |++|..+|++|+..+|+|.-.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 888888888888888875543 8899999999999999986543
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00034 Score=64.24 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=89.9
Q ss_pred HhCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSF------FNLWLMLGQLEERL-GHLKEAKEAYQSGCNQCPNC------IPLWYSLANLE 569 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 569 (701)
+.+++.+|..+++++++++.+- ...++.+|.+|... .++++|+..|+++-.-.... -...+..+...
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3446677777777776665442 34556788888755 88899999999887654332 23456666666
Q ss_pred hhhccCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 570 EKRNGLNGLSKARAVLSVARLKNPLNP-------EIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
.. .+++.+|+.+|++.....-+++ +.++..|.++.-..+.-.+...+++..+.+|...
T Consensus 165 a~---leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 165 AQ---LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HH---HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 67 8899999999999887766654 3456666777777888888899999999999753
No 216
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.05 E-value=0.00031 Score=71.62 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=105.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 377 AIFSHACTVFLTKKSIWLKAAQLEKTHGS------------RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 377 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
.-|++.+..+|.+..+|+.++.+.-..-. .+.-+.+|++|++.+|++..+++.+........+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35788899999999999999987654422 355678889999999999999999988888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcCCC-------------------HHHHHHHHHHHH
Q 040951 445 DILQEAYATIPNSEEIWLAAFKLEFE---NRELERARMLLAKARDMGGT-------------------ERVWMKSAIVER 502 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~p~-------------------~~~~~~~a~~~~ 502 (701)
.-+++++..+|++..+|..+...... .-.++..+.+|.+++..... ..++..+..+..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887776655 23577788888877753211 123344444455
Q ss_pred HhCChHHHHHHHHHHHHhC
Q 040951 503 ELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~ 521 (701)
..|..+.|+.+++-.++.+
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFN 184 (321)
T ss_pred HCCchHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0027 Score=59.56 Aligned_cols=226 Identities=15% Similarity=0.037 Sum_probs=153.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 040951 389 KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA-------------------EVLWLMGAKEKWLAGDVPAARDILQE 449 (701)
Q Consensus 389 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~~a~~~~~~g~~~~A~~~l~~ 449 (701)
...+|.....++.+....++|..-+...-..+..+ -.....+|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 45677777777777777777665554433322111 01223334444445554444333332
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhC-CCCHHHH
Q 040951 450 AYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRF-PSFFNLW 528 (701)
Q Consensus 450 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 528 (701)
.... ..............+..+..+++-+ ..+.+.++.++...|.|.-....+.+.++.+ |..+.+.
T Consensus 148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl-----~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL-----GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred HHHH-------HHHHHHHHHhccchhhHHHHHHHHH-----HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 2211 0111111111222233333433322 3466777888888899999999999999998 5678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhC------CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 529 LMLGQLEERLGHLKEAKEAYQSGCNQC------PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLAT 602 (701)
Q Consensus 529 ~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 602 (701)
..+|.+..+.||.+.|..+|++.-+.. .....+....+.++.- .+++..|...|.+++..+|.++..-...
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg---~nn~a~a~r~~~~i~~~D~~~~~a~NnK 292 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG---QNNFAEAHRFFTEILRMDPRNAVANNNK 292 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec---ccchHHHHHHHhhccccCCCchhhhchH
Confidence 999999999999999999999654322 2234556777777878 8999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 603 IRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 603 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
+.|..-.|+..+|++.++.+++..|..
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999964
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0051 Score=57.80 Aligned_cols=132 Identities=12% Similarity=0.092 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYF-PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI------PNSEEIWLAA 464 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~------p~~~~~~~~l 464 (701)
+.+.++.++.-+|.+.-....+.+.++.+ |..+.+...++.+..+.||.+.|...|++.-+.+ ....-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455555555666666666666666655 4455566666666666666666666665433221 1112233344
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC
Q 040951 465 FKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS 523 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 523 (701)
+.++.-.+++..|...|.+++...|. +......+.+....|+...|++.++.++...|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44444455555555555555544444 444444444444555555555555555555544
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.001 Score=64.45 Aligned_cols=154 Identities=11% Similarity=-0.056 Sum_probs=129.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHcCCh
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY-FPQA---EVLWLMGAKEKWLAGDV 440 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~g~~ 440 (701)
....+|++.+|...+++.++.+|.+.-+|..--..+...|+...-...+++++.. +|+- ..+.-+++-.+...|-+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467899999999999999999999999998888999999999999999999877 6655 45566888889999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHH
Q 040951 441 PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-----ERVWMKSAIVERELGNNAEERGFIE 515 (701)
Q Consensus 441 ~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~a~~~~~~g~~~~A~~~~~ 515 (701)
++|.+.-+++++.||.+.-+....+.++..++++.++.+...+.-..-.. ..-|...+.++.+.+.|+.|+.+|.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999999999999999888889999999999999999988875543222 2234445777888899999999997
Q ss_pred HHH
Q 040951 516 EGL 518 (701)
Q Consensus 516 ~al 518 (701)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 654
No 220
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.96 E-value=2.9e-05 Score=74.93 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=70.5
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCC
Q 040951 497 SAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN 576 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g 576 (701)
.|.-|+.+|.|++|+.+|.+++..+|.++.++.+.+..|.+++.+..|..-+..++.++.....+|.+.+..-.. .|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~---Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES---LG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH---Hh
Confidence 355566667777777777777777776677777777777777777777777777766666666666666666666 66
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 577 GLSKARAVLSVARLKNPLNPEIWLATIR 604 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 604 (701)
...+|.+.++.++.+.|++.++-..++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 7777777777777777766655444443
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.95 E-value=0.001 Score=68.41 Aligned_cols=218 Identities=20% Similarity=0.174 Sum_probs=141.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH
Q 040951 398 QLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERA 477 (701)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A 477 (701)
.-..+..+...-++.-.+|++.+|+...+|..++.-. .....+|..+|+++++....+ +.........|..-+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchhhh
Confidence 3345567777888888899999999988888887643 455788889999888764331 1111111111111110
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-
Q 040951 478 RMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPS--FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ- 554 (701)
Q Consensus 478 ~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 554 (701)
. ......+-..+-..++.+.++.|+.++|++.+...++.+|. +..++..+..++...+.+.++..++.+.-+.
T Consensus 250 ~----~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 250 W----HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred h----hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 0 00011122455567899999999999999999999999886 4668999999999999999999999886433
Q ss_pred CCCCHHHHHHHHHHHhhh-c---------cCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHHhcCCHHHH
Q 040951 555 CPNCIPLWYSLANLEEKR-N---------GLN---GLSKARAVLSVARLKNPLNPEIWLATIR------AESKHGNKKEA 615 (701)
Q Consensus 555 ~p~~~~~~~~la~~~~~~-~---------~~g---~~~~A~~~~~~a~~~~p~~~~~~~~l~~------~~~~~g~~~~A 615 (701)
.|++....+.-+-+..+. + ..| .-..|.+.+.+|++.||.-|..++..=. -..+.|+ .+|
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEA 404 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEA 404 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHH
Confidence 366666555544443220 0 011 1235778899999999998876655322 2344564 677
Q ss_pred HHHHHHHHHhC
Q 040951 616 DSFIAKALQKC 626 (701)
Q Consensus 616 ~~~~~~al~~~ 626 (701)
+.+---.++.-
T Consensus 405 iaYAf~hL~hW 415 (539)
T PF04184_consen 405 IAYAFFHLQHW 415 (539)
T ss_pred HHHHHHHHHHH
Confidence 77665555543
No 222
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.0019 Score=65.69 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 598 IWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 598 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
+++.++..+.-.|++++|..++..+...-|
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 456667777777777777777776666555
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.93 E-value=1.2e-05 Score=54.87 Aligned_cols=41 Identities=27% Similarity=0.545 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccccc
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALY 700 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~~ 700 (701)
|.++..+|..|...|++++|+.+|+++++.+|++.++|..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 56889999999999999999999999999999999999754
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.86 E-value=0.00031 Score=58.25 Aligned_cols=85 Identities=21% Similarity=0.252 Sum_probs=39.2
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHH
Q 040951 436 LAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-----ERVWMKSAIVERELGNNAEE 510 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~a~~~~~~g~~~~A 510 (701)
..|+.+.|++.|.+++...|....++...+..+...|+.++|+.-++++++.... -..+...|.+|+..|+.+.|
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 3444444444444444444444444444444444444444444444444443322 23344444555555555555
Q ss_pred HHHHHHHHHh
Q 040951 511 RGFIEEGLKR 520 (701)
Q Consensus 511 ~~~~~~al~~ 520 (701)
+.-|+.+-++
T Consensus 135 R~DFe~AA~L 144 (175)
T KOG4555|consen 135 RADFEAAAQL 144 (175)
T ss_pred HHhHHHHHHh
Confidence 5555544443
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.85 E-value=3.7e-05 Score=52.38 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA 566 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 566 (701)
++.+|..|...|++++|++.|+++++.+|+++.+|..++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 334444444444444444444444444444444444333
No 226
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.83 E-value=0.0099 Score=62.06 Aligned_cols=168 Identities=19% Similarity=0.123 Sum_probs=89.6
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-H-----
Q 040951 422 QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN----SEEIWLAAFKLEFENRELERARMLLAKARDMGGT-E----- 491 (701)
Q Consensus 422 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~----- 491 (701)
.....|+..+.+....|.++.|...+.++...++. .+.+.+..+++....|+..+|+..++..+..... .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34556777777777777777777777777665421 3456666777777777777777777766652111 0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhhhCCCCHHHHHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL------GHLKEAKEAYQSGCNQCPNCIPLWYSL 565 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l 565 (701)
......+..+............... .....++..+|...... +..+++...|..+++.+|.....|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESK-----ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHHhhccccccccccccchhhhhH-----HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0000000000000000000000000 00134556666665555 666667777777777777666666666
Q ss_pred HHHHhhhcc--------------CCCHHHHHHHHHHHHHhCCC
Q 040951 566 ANLEEKRNG--------------LNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 566 a~~~~~~~~--------------~g~~~~A~~~~~~a~~~~p~ 594 (701)
|.++..... ..-...|+..|-+++...++
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 665543100 01224578888888888776
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.83 E-value=0.00052 Score=56.94 Aligned_cols=93 Identities=17% Similarity=0.056 Sum_probs=66.5
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC----HHHHHHHHHHHhhhc
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC----IPLWYSLANLEEKRN 573 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~ 573 (701)
+....+.|+.+.|++.|.+++...|..+.+|.+.++.+.-+|+.++|.+-+.+++++.... ...+...+.+|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-- 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-- 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--
Confidence 4455667777777777777777777777777777777777777777777777777764432 3446667777777
Q ss_pred cCCCHHHHHHHHHHHHHhCC
Q 040951 574 GLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 574 ~~g~~~~A~~~~~~a~~~~p 593 (701)
.|+-+.|+..|+.+-+...
T Consensus 128 -~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 -LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred -hCchHHHHHhHHHHHHhCC
Confidence 7777777777777766543
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.77 E-value=0.00014 Score=74.58 Aligned_cols=70 Identities=19% Similarity=0.047 Sum_probs=65.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH---HHHHHHHHhhhccCCCHHHHHHHHHHHHHhC
Q 040951 520 RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL---WYSLANLEEKRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
.+|+++..|+++|..|...|++++|+..|+++++++|++..+ |+++|.+|.. +|++++|+..|++++...
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~---LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY---REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhc
Confidence 468889999999999999999999999999999999999854 9999999999 999999999999999973
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0051 Score=57.17 Aligned_cols=28 Identities=25% Similarity=0.087 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040951 393 WLKAAQLEKTHGSRESLIALLRKAVTYF 420 (701)
Q Consensus 393 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 420 (701)
+...+..+....++++|...+.++.+-.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y 61 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY 61 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3333445555666666666666666443
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0063 Score=56.60 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHH
Q 040951 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSE------EIWLA 463 (701)
Q Consensus 390 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~------~~~~~ 463 (701)
...+.....+|..+|..+.|-..++++-+. ...-+++.|+++|++++...-.+. +.+-.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333444444555555555555555444322 234456666666666655432221 12223
Q ss_pred HHHHHHHcCcHHHHHHHHH
Q 040951 464 AFKLEFENRELERARMLLA 482 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~ 482 (701)
.+.++.+...+++|-..+.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred hhhHhhhhHHhhHHHHHHH
Confidence 4444455555555444443
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.74 E-value=0.0051 Score=62.54 Aligned_cols=182 Identities=13% Similarity=-0.006 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-hhhCCCCHHHH
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKR----FPSFFNLWLMLGQLEER---LGHLKEAKEAYQSG-CNQCPNCIPLW 562 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~ 562 (701)
+.+...+-..|+...+|+.-+.+.+..-.. .++.+.+...+|..+.+ .|+.++|+.++..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344444444556666666666665554443 33445555666666665 66666666666663 33445556666
Q ss_pred HHHHHHHhhhc------cCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHH
Q 040951 563 YSLANLEEKRN------GLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKAL-QKCPNSGILWAE 635 (701)
Q Consensus 563 ~~la~~~~~~~------~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~l~~~ 635 (701)
..+|++|...+ +....++|+..|.++...+|+.. .-.+++.++...|.......-+.+.. +.+ .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~--------~ 291 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLS--------S 291 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHH--------H
Confidence 66666665421 12346677777777777775432 22333334444443222221111111 110 0
Q ss_pred HHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 636 LIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 636 ~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
++- .+.....-++.....+++.+..-.|++++|..++++++...|.
T Consensus 292 llg-----------~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 292 LLG-----------RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHH-----------hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 000 0000001124556667788888899999999999999988764
No 232
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.028 Score=52.12 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=62.4
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--------HH
Q 040951 428 LMGAKEKWL-AGDVPAARDILQEAYATIPNS------EEIWLAAFKLEFENRELERARMLLAKARDMGGT--------ER 492 (701)
Q Consensus 428 ~~~a~~~~~-~g~~~~A~~~l~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~--------~~ 492 (701)
..+|.+|.. ..++++|+..|+++-+..... ....+..+.+....++|.+|+.+|++.....-+ -.
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 345555554 366777777777766554331 224556666677778888888888877664322 23
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
.++..|.++....+.-.+...+++....+|..
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 34455666666678878888888888888875
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.72 E-value=0.00017 Score=73.84 Aligned_cols=68 Identities=9% Similarity=-0.030 Sum_probs=63.4
Q ss_pred CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 488 GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNL---WLMLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 488 ~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
.|+ +..|+.+|..+...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+..|+++++..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 8899999999999999999999999999999999854 9999999999999999999999999973
No 234
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.71 E-value=2e-05 Score=74.94 Aligned_cols=84 Identities=15% Similarity=0.316 Sum_probs=66.6
Q ss_pred HHHHHhhhCCCCHHHHHHHHhhc----CcchHHHHHHHHHHhCCCcHHHHHHHHHccc----CHHHHHHHHHHHHHhcCC
Q 040951 174 LITKGCNMCPKNEDVWLEACRLA----RPDEAKGVVAKGVRQIPKSVRLWLQAAELDH----DKANKSRVLRMALDEIPD 245 (701)
Q Consensus 174 ~~~~~~~~~P~~~~~wl~~~~l~----~~~~A~~~l~~al~~~P~~~~lw~~~~~le~----~~~~a~~~l~kal~~~P~ 245 (701)
++.++....|.++.+|..++..- ....-..++.++++.+|.++.+|+-++..+. +...++.++.++|..+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34566777888888888887653 2336677888888889999998888777665 788888888888888888
Q ss_pred CHHHHHHHHhhc
Q 040951 246 SVRLWKALVEIS 257 (701)
Q Consensus 246 ~~~l~~~~~~l~ 257 (701)
++.+|.+|.+++
T Consensus 175 ~p~iw~eyfr~E 186 (435)
T COG5191 175 SPRIWIEYFRME 186 (435)
T ss_pred CchHHHHHHHHH
Confidence 888888888877
No 235
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=9e-05 Score=47.21 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
|.+++.+|.+++..|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5689999999999999999999999999999985
No 236
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.62 E-value=0.00022 Score=55.87 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhc
Q 040951 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHD 673 (701)
Q Consensus 594 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~ 673 (701)
+-..++..+|.++...|++++|+..|+++++..-..+. ..|.-..++..+|.++...
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------------~~~~~a~~~~~lg~~~~~~ 59 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-----------------------DHPDTANTLNNLGECYYRL 59 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-----------------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-----------------------CCHHHHHHHHHHHHHHHHc
Confidence 34568899999999999999999999999976211100 0011256789999999999
Q ss_pred CCHHHHHHHHHHHHHhC
Q 040951 674 RKVDKARNWFNKAVSLD 690 (701)
Q Consensus 674 g~~~~A~~~~~~al~~~ 690 (701)
|++++|+++|++++++.
T Consensus 60 g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 60 GDYEEALEYYQKALDIF 76 (78)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999999863
No 237
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.62 E-value=0.0006 Score=60.63 Aligned_cols=88 Identities=16% Similarity=-0.010 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Q 040951 372 IETARAIFSHACTVFLTKKSIWLKAAQLEKTHG----------SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGD-- 439 (701)
Q Consensus 372 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~-- 439 (701)
++.|++.++.....+|.+.+.+..++..+.... -+++|+.-|+.++.++|+...++..+|..+...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 578889999999999999998888887766442 24566777777777788877777777776654331
Q ss_pred ---------hHHHHHHHHHHHHhCCCCHH
Q 040951 440 ---------VPAARDILQEAYATIPNSEE 459 (701)
Q Consensus 440 ---------~~~A~~~l~~a~~~~p~~~~ 459 (701)
+++|..+|+++...+|++..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 44555555555555565443
No 238
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.02 Score=53.98 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH-HHHHHHHH
Q 040951 372 IETARAIFSHACTVFLTKKSIWLKAAQLEKTHG-SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVP-AARDILQE 449 (701)
Q Consensus 372 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~-~A~~~l~~ 449 (701)
-..|..+-+.++..+|.+..+|.-.-.+....+ +..+-...+..++..+|++..+|...-.+....|++. .-+++...
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 345555555555555555555544333333222 2333444444444455555555544444444444444 44444444
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 450 AYATIPNSEEIWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 450 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
++..+..+..+|...-.+...-+.++.-+.+..++++
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433
No 239
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.61 E-value=0.035 Score=57.94 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS----FFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
...|...+.+.+..|.++.|...+.++....+. .+.+.+..+.+....|+..+|+..++..+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678888888888999999988888888776522 467788888888888888888888888777
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0086 Score=58.26 Aligned_cols=119 Identities=13% Similarity=-0.062 Sum_probs=67.0
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCC
Q 040951 466 KLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKR-FPSF---FNLWLMLGQLEERLGH 540 (701)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~ 540 (701)
-+....|++.+|....++.++.+|+ .-.+...-..++..|+...-...+++.+.. +|+- .-+.-+++..+...|-
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3344556666666666666666665 333444444555566666666666666555 3332 2333344444556666
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Q 040951 541 LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSV 587 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~ 587 (701)
+++|.+..+++++++|.+.-+.-..+.++.. .|++.++.+++.+
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem---~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEM---NGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHh---cchhhhHHHHHHh
Confidence 6666666666666666666555666666666 6666666665554
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.59 E-value=0.0086 Score=61.79 Aligned_cols=193 Identities=18% Similarity=0.178 Sum_probs=133.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCh
Q 040951 428 LMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNN 507 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~ 507 (701)
.....-.|+..+...-++.-.+|++.+|++.++|..++.- ......+|..+|+++++.... .+.........|..
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~---~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA---SLGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH---hhchhhhhhcccch
Confidence 3445556788899999999999999999999998877653 245578899999998875422 01111111111111
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC--CHHHHHHHHHHHhhhccCCCHHHHHH
Q 040951 508 AEERGFIEEGLKRFPSF--FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN--CIPLWYSLANLEEKRNGLNGLSKARA 583 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~g~~~~A~~ 583 (701)
- ..+..-+.+ ..+...++.+..+.|+.++|++.++..++.+|. +..++..+...+.. .+.+.++..
T Consensus 247 ~-------e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe---lq~Yad~q~ 316 (539)
T PF04184_consen 247 W-------EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE---LQAYADVQA 316 (539)
T ss_pred h-------hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh---cCCHHHHHH
Confidence 1 111111111 345567899999999999999999999998876 46678899999999 999999999
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHh-cCC---------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 584 VLSVARLK-NPLNPEIWLATIRAESK-HGN---------------KKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 584 ~~~~a~~~-~p~~~~~~~~l~~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
++.+--.. -|++..+.+..+-+-.+ .|+ -..|.+.+.+|++.+|.-+.....
T Consensus 317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 99986433 26776665555544332 121 235678899999999988766554
No 242
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00078 Score=62.23 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=88.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
.+.....|..|+..|.+++.++|..+..|..-+.++++..+++.+..-..++++..|+.....+.++........++.|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 34666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-----CCCHHHHHHHHHH
Q 040951 445 DILQEAYATI-----PNSEEIWLAAFKL 467 (701)
Q Consensus 445 ~~l~~a~~~~-----p~~~~~~~~la~~ 467 (701)
..+.++.... |.-.+++..+-.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999996543 2234455555444
No 243
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.25 Score=55.43 Aligned_cols=300 Identities=15% Similarity=0.101 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-
Q 040951 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYF--PQ- 422 (701)
Q Consensus 346 ~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~- 422 (701)
...|..++... ...|...+|+..|-++ ++++.+....+...+.|.+++...++..+-+.. |.
T Consensus 1104 p~vWsqlakAQ----------L~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i 1168 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQ----------LQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI 1168 (1666)
T ss_pred hHHHHHHHHHH----------HhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc
Confidence 45666666444 6677777777766554 455667777777777777777777776665542 21
Q ss_pred cHHHHHHHHHH------------------------HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Q 040951 423 AEVLWLMGAKE------------------------KWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERAR 478 (701)
Q Consensus 423 ~~~~~~~~a~~------------------------~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~ 478 (701)
+..+.+.+|+. .+..|.++.|.-+|. +..-|-.++..+...|+|+.|.
T Consensus 1169 d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1169 DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH
Confidence 22333333332 222233333333332 3445777888888999999998
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC
Q 040951 479 MLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC 558 (701)
Q Consensus 479 ~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 558 (701)
...+++ .+.++|....-.+...+.+.-|.-+= +.+- -..+-+-.+...|...|-+++-+..++.++-+...+
T Consensus 1241 D~aRKA----ns~ktWK~VcfaCvd~~EFrlAQiCG---L~ii-vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1241 DAARKA----NSTKTWKEVCFACVDKEEFRLAQICG---LNII-VHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred HHhhhc----cchhHHHHHHHHHhchhhhhHHHhcC---ceEE-EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 877765 34678887777776666665543220 1110 124456678888999999999999999999988888
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC--C------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 559 IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN--P------LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 559 ~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~--p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
...+..+|.+|.+ =.+++-++.++-....- | +...+|..+..+|..-..|+.|...+ + ...+
T Consensus 1313 MgmfTELaiLYsk----ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tm---m---~h~t 1382 (1666)
T KOG0985|consen 1313 MGMFTELAILYSK----YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTM---M---EHPT 1382 (1666)
T ss_pred HHHHHHHHHHHHh----cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---H---hCCh
Confidence 8889999999886 34677777666544332 2 23468999999998888888775433 2 2223
Q ss_pred HHHHHHHh--cCCCccchhHHHHHHHhc-CCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 631 ILWAELIK--MVPHHDRKSKGKDALVKS-DRDPHVFAAVAKLFWHDRKVDKARNWFNKA 686 (701)
Q Consensus 631 ~l~~~~~~--~~~~~~~~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 686 (701)
..|...-+ +-.+-...+.+-+|+.-. .-.|..+..+-.++.-.=+...+..+|.++
T Consensus 1383 eaw~~~~FKdii~kVaNvElyYkAi~FYl~~~P~llnDlL~vL~pRlDh~r~v~~f~K~ 1441 (1666)
T KOG0985|consen 1383 EAWDHGQFKDIITKVANVELYYKAIQFYLDFHPLLLNDLLTVLSPRLDHTRTVSIFSKA 1441 (1666)
T ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHHHHhcccccCchHHHHHHHhc
Confidence 44543211 001111122333333322 123445554544444445666777777765
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.053 Score=58.42 Aligned_cols=159 Identities=16% Similarity=0.044 Sum_probs=115.9
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCC--CHHHHHHHH-------HHHH---HcCCHHHHHHHHHHHhhhCCCCHHHHHHH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPS--FFNLWLMLG-------QLEE---RLGHLKEAKEAYQSGCNQCPNCIPLWYSL 565 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la-------~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l 565 (701)
..+.-..||-+.++..+.++.+. ++ .+-+-+.+- ...- ...+.+.|.+++....+..|++.-..+..
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~ 273 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE 273 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 33334568999999999998773 32 121111111 1111 24577889999999999999999999999
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 040951 566 ANLEEKRNGLNGLSKARAVLSVARLKNPLNP----EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641 (701)
Q Consensus 566 a~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~ 641 (701)
|+++.. .|+.++|+..|++++.....-+ -.+..++.++.-.++|++|...+.+..+.+..+.
T Consensus 274 gR~~~~---~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk----------- 339 (468)
T PF10300_consen 274 GRLERL---KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK----------- 339 (468)
T ss_pred HHHHHH---hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH-----------
Confidence 999999 9999999999999885332222 4678899999999999999999999998776542
Q ss_pred CccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHh
Q 040951 642 HHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKV-------DKARNWFNKAVSL 689 (701)
Q Consensus 642 ~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 689 (701)
....+..|.++...|+. ++|.++|.++-..
T Consensus 340 ------------------a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 340 ------------------AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ------------------HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 33445566677777777 7777777776554
No 245
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.53 E-value=0.00015 Score=56.79 Aligned_cols=61 Identities=33% Similarity=0.354 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKR---FPS----FFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
++..+|.++...|++++|+.+|++++.. .++ ...++..+|.++...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444444444444444432 111 123444445555555555555555555443
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.53 E-value=0.016 Score=59.11 Aligned_cols=169 Identities=15% Similarity=0.052 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----CCC-HHHHHHHHHHHHH---hCChHHHHHHHHHHH-HhCCCCHHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDM----GGT-ERVWMKSAIVERE---LGNNAEERGFIEEGL-KRFPSFFNL 527 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~p~-~~~~~~~a~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~ 527 (701)
++++...+...|....+|+.-+++.+.+-.. .+. +.+-..+|-.+.+ .|+.++|+.++..++ ...+.++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4556677777888899999999888887665 222 6677777777777 799999999998844 455677899
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHH-------H-H
Q 040951 528 WLMLGQLEERL---------GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVA-------R-L 590 (701)
Q Consensus 528 ~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a-------~-~ 590 (701)
+-.+|.+|... ...++|+..|.++....|+. ..-++++.++.. .|.......-+++. + +
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~---~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML---AGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH---cCCcccchHHHHHHHHHHHHHHHh
Confidence 99999987542 35789999999999999654 444556666655 44322222111111 1 1
Q ss_pred hC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 591 KN----PLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 591 ~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
+. -.+......++.+..-.|+++.|...+++++...|..
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11 1233344557777788999999999999999987753
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.52 E-value=0.00017 Score=45.94 Aligned_cols=34 Identities=18% Similarity=0.521 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
+.+++.+|.++...|++++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 248
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.48 E-value=0.3 Score=54.96 Aligned_cols=415 Identities=15% Similarity=0.125 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHCCCCH----HHHHHHHhc-----cChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChh
Q 040951 260 EEARILLHRAVECCPLDV----ELWLALARL-----ETYGVARSVLNKARKKLPK--E----RAIWIAAAKLEEANGNTS 324 (701)
Q Consensus 260 ~~A~~~l~~a~~~~P~~~----~l~~~l~~l-----~~~~~A~~~l~~a~~~~p~--~----~~~~~~~a~~~~~~g~~~ 324 (701)
..|+++++-+++..+-++ .+.+.++.+ ++++.|+..+++++..... - ...-..+++++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 356777777764333332 223334443 5788888888888766633 2 223345678888887666
Q ss_pred HHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHH----HHHH
Q 040951 325 MVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVF--LTKKSIWL----KAAQ 398 (701)
Q Consensus 325 ~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~----~la~ 398 (701)
|...+++.++.....+ ...|...-++. .+......+++..|...++.+.... +.++.+.. .-+.
T Consensus 118 -a~~~l~~~I~~~~~~~----~~~w~~~frll-----~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~ 187 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYG----HSAWYYAFRLL-----KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL 187 (608)
T ss_pred -HHHHHHHHHHHHhccC----chhHHHHHHHH-----HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 9999999988766632 23454443333 1222344489999999999988765 45554332 2245
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC----------CCcHHHHHHHHHHH--HHcCChHHHHHHHH---HHHHhCCCC------
Q 040951 399 LEKTHGSRESLIALLRKAVTYF----------PQAEVLWLMGAKEK--WLAGDVPAARDILQ---EAYATIPNS------ 457 (701)
Q Consensus 399 ~~~~~g~~~~A~~~~~~al~~~----------p~~~~~~~~~a~~~--~~~g~~~~A~~~l~---~a~~~~p~~------ 457 (701)
+....+..+++.+.++++.... +....+|..+.++. ...|++..+...+. ..+...-+.
T Consensus 188 l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~ 267 (608)
T PF10345_consen 188 LHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSW 267 (608)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCc
Confidence 5566787888888888774321 12234555555543 34777666655443 333322110
Q ss_pred --------------------HH-------------HHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------C---C----
Q 040951 458 --------------------EE-------------IWLAAFKLEFENRELERARMLLAKARDMG-------G---T---- 490 (701)
Q Consensus 458 --------------------~~-------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------p---~---- 490 (701)
+. +++.-+-.....+..++|.+.++++++.. + .
T Consensus 268 ~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~ 347 (608)
T PF10345_consen 268 DEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLS 347 (608)
T ss_pred CCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHH
Confidence 00 12222333444566667877777776521 1 1
Q ss_pred ----HHHHHHH---------HHHHHHhCChHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 040951 491 ----ERVWMKS---------AIVERELGNNAEERGFIEEGLKRF---PS------FFNLWLMLGQLEERLGHLKEAKEAY 548 (701)
Q Consensus 491 ----~~~~~~~---------a~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~ 548 (701)
...|+.. +....-.+++..|...+..+.... |. .+.+++..|..+...|+.+.|...|
T Consensus 348 ~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y 427 (608)
T PF10345_consen 348 EASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY 427 (608)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0122222 233456689989988888776553 32 3678889999999999999999999
Q ss_pred H--------HHhhhCCCCHHH----HHHHHHHHhhhccCCCH--HH--HHHHHHHHHHhCCCCH----HHHHHHH-HHHH
Q 040951 549 Q--------SGCNQCPNCIPL----WYSLANLEEKRNGLNGL--SK--ARAVLSVARLKNPLNP----EIWLATI-RAES 607 (701)
Q Consensus 549 ~--------~al~~~p~~~~~----~~~la~~~~~~~~~g~~--~~--A~~~~~~a~~~~p~~~----~~~~~l~-~~~~ 607 (701)
. .+....+.+ ++ ..++..++.. .+.. .+ +..++++.-....+.+ ..|..+. ..+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~-El~ila~LNl~~I~~~---~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 428 QKPRFLLCEAANRKSKFR-ELYILAALNLAIILQY---ESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN 503 (608)
T ss_pred hhhHHhhhhhhccCCcch-HHHHHHHHHHHHHhHh---hcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh
Confidence 8 333333333 33 3334444443 3322 22 4444444322211111 2222222 2221
Q ss_pred h--cCCHHHHHHHHHHHHHhC-CC---CHHH-----HHHHHhcCCCccc-hhHHHHHHHhcC---CChH-HHH-----HH
Q 040951 608 K--HGNKKEADSFIAKALQKC-PN---SGIL-----WAELIKMVPHHDR-KSKGKDALVKSD---RDPH-VFA-----AV 666 (701)
Q Consensus 608 ~--~g~~~~A~~~~~~al~~~-p~---~~~l-----~~~~~~~~~~~~~-~~~~~~al~~~p---~~~~-~~~-----~l 666 (701)
. .-...++...+..+++.. .. +..+ +.....+....+. ...+..++.... +... +|. .+
T Consensus 504 ~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l 583 (608)
T PF10345_consen 504 TFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGML 583 (608)
T ss_pred hCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 1 122347778887777765 11 1111 1112223232222 223333444433 2232 332 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040951 667 AKLFWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 667 g~~~~~~g~~~~A~~~~~~al~ 688 (701)
...+...|+.++|.....+.-.
T Consensus 584 ~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 584 ADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHcCcHHHHHHHHHHHHH
Confidence 4456678999999988877644
No 249
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.47 E-value=0.011 Score=61.69 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhCCCcHHHHHHHHHc---ccCHHHHHHHHHHHHHhcCCCHH------HHHHHHhhcCHHHHHHHHHHHH
Q 040951 200 EAKGVVAKGVRQIPKSVRLWLQAAEL---DHDKANKSRVLRMALDEIPDSVR------LWKALVEISSEEEARILLHRAV 270 (701)
Q Consensus 200 ~A~~~l~~al~~~P~~~~lw~~~~~l---e~~~~~a~~~l~kal~~~P~~~~------l~~~~~~l~~~~~A~~~l~~a~ 270 (701)
.-..++-.+++++|.|..++..+.-+ ..+..+|...++.++-+.|.... +-..+-+.+-..+|-.++..|+
T Consensus 197 ~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~ 276 (886)
T KOG4507|consen 197 DIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAAL 276 (886)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhc
Confidence 44566677778888887776655433 33677778888888877766443 2222334454555666666666
Q ss_pred HHCCC----CHHHHHHHHhccChHHHHHHHHHHHHhCCC
Q 040951 271 ECCPL----DVELWLALARLETYGVARSVLNKARKKLPK 305 (701)
Q Consensus 271 ~~~P~----~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~ 305 (701)
+-.|. ++.+-..++.++.+......|..+.+..|.
T Consensus 277 ~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 277 DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred cCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 54432 334555666666666666666666666665
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.016 Score=55.97 Aligned_cols=147 Identities=19% Similarity=0.064 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHH--HHHHHH
Q 040951 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWM--KSAIVE 501 (701)
Q Consensus 424 ~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--~~a~~~ 501 (701)
...-+.-+.-....|++.+|...|..++...|++.++.+.++.++...|+.+.|..++...-.........- ....++
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334445555566788888888888888888888888888888888888888888887766433222211111 112333
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC--CHHHHHHHHHHHhh
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN--CIPLWYSLANLEEK 571 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 571 (701)
.+.....+. ..+++.+..+|++..+-+.++..+...|+.+.|.+.+-..++.+-. +......+..++..
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 333333322 3355667778888888888888888888888888887777765433 23444444444444
No 251
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.021 Score=53.77 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH-HHHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFEN-RELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNA-EERGFIEE 516 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~-~A~~~~~~ 516 (701)
-+.|..+.+.++..+|.+..+|...-.++... .+..+-++.+...+..+|. -++|...-.+....|++. .-+.....
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 44556666666666666666666544444332 3445555556666655555 556655555555556665 56666777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCC-----CHHHHHHHHHHHHHh
Q 040951 517 GLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN-----GLSKARAVLSVARLK 591 (701)
Q Consensus 517 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g-----~~~~A~~~~~~a~~~ 591 (701)
++..+..+..+|...-.+....+.++.-+.+....++.+-.+-.+|...--+.... .| ..+.-+.+....+..
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~--~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT--KGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec--cCCccHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777766655545554322111110 11 123344556666777
Q ss_pred CCCCHHHHHHHHHHHHh
Q 040951 592 NPLNPEIWLATIRAESK 608 (701)
Q Consensus 592 ~p~~~~~~~~l~~~~~~ 608 (701)
.|+|..+|..+.-++..
T Consensus 217 vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 217 VPNNESAWNYLKGLLEL 233 (318)
T ss_pred CCCCccHHHHHHHHHHh
Confidence 78887778777766664
No 252
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.51 Score=58.08 Aligned_cols=308 Identities=15% Similarity=0.074 Sum_probs=177.7
Q ss_pred hccChHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcC
Q 040951 285 RLETYGVARSVLNKARKKLPK--E--RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAG 360 (701)
Q Consensus 285 ~l~~~~~A~~~l~~a~~~~p~--~--~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~ 360 (701)
+.+.|.+|.-++++- ...+. + ......+-.+|...+++|.+..+...-.. .| . ......
T Consensus 1395 rc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~--------s-l~~qil------ 1457 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP--------S-LYQQIL------ 1457 (2382)
T ss_pred hhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc--------c-HHHHHH------
Confidence 446788888888875 11111 1 22333344488888899888777664111 00 1 111111
Q ss_pred CcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHcCC
Q 040951 361 SDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGA-KEKWLAGD 439 (701)
Q Consensus 361 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a-~~~~~~g~ 439 (701)
.....|++..|..+|+++++.+|+....+..........|.+...+...+-.....++...-|..++ ...|..++
T Consensus 1458 ----~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~q 1533 (2382)
T KOG0890|consen 1458 ----EHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQ 1533 (2382)
T ss_pred ----HHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcc
Confidence 1267899999999999999999998877777777778888888888877776666565555555443 45578888
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHH--HHHHHHHHHhcC--C--------C-HHHHHHHHHHHHHhCC
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRELER--ARMLLAKARDMG--G--------T-ERVWMKSAIVERELGN 506 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~--A~~~~~~a~~~~--p--------~-~~~~~~~a~~~~~~g~ 506 (701)
++.-...+. ..+-.+-.+.. ++.+.....+-+. -....+...... | + ...|-.+..++. .-+
T Consensus 1534 wD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~-l~e 1608 (2382)
T KOG0890|consen 1534 WDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHL-LLE 1608 (2382)
T ss_pred hhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHH-HHH
Confidence 887766655 22222222221 4444444332211 111222211110 0 1 111111111111 011
Q ss_pred hHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHh---hhCCC----CHHHHHHHHHHHhhhcc
Q 040951 507 NAEERGFIEEGLKRFPS-----FFNLWLMLGQLEERLGHLKEAKEAYQSGC---NQCPN----CIPLWYSLANLEEKRNG 574 (701)
Q Consensus 507 ~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~----~~~~~~~la~~~~~~~~ 574 (701)
.+...+.+. +..|+ +..-|......-....+..+-+-.+++.+ ...|+ -.+.|...|++...
T Consensus 1609 l~~~~~~l~---~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~--- 1682 (2382)
T KOG0890|consen 1609 LENSIEELK---KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL--- 1682 (2382)
T ss_pred HHHHHHHhh---ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh---
Confidence 111111111 11121 12334333333222222333333344432 22332 37889999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
.|+++.|...+-.|.+.. -+.+..+.+..+...|+...|+.++++.+..+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999988776 46799999999999999999999999999765
No 253
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.35 E-value=0.00026 Score=44.82 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 040951 649 GKDALVKSDRDPHVFAAVAKLFWHDRKVDKARN 681 (701)
Q Consensus 649 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 681 (701)
+.+|++.+|+++.+++.+|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 467888888899999999999999999999963
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.34 E-value=0.18 Score=50.46 Aligned_cols=64 Identities=8% Similarity=-0.098 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC
Q 040951 493 VWMKSAIVERELGNN---AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP 556 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 556 (701)
+...++..+...+.+ .+|..+++.+-..+|+.+.++.....+....++.+.+.+.+.+++...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 444555555555543 3455566666666777777776666666667777777777777776544
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.012 Score=56.81 Aligned_cols=139 Identities=15% Similarity=-0.034 Sum_probs=95.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCChHHHH
Q 040951 366 CKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE-VLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~g~~~~A~ 444 (701)
....|++..|...|..++...|++..+...++.++...|+.+.|..++...-....... ........++.+..+..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~- 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI- 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-
Confidence 37889999999999999999999999999999999999999998888776432222111 1111122333333333322
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhC
Q 040951 445 DILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT---ERVWMKSAIVERELG 505 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~a~~~~~~g 505 (701)
..+++.+..+|++.++.+.++..+...|+.+.|.+.+-..+..+-+ ..+...+..++...|
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3456667778999999999999999999999999888877776533 344444444443334
No 256
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.32 E-value=0.00025 Score=44.90 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=21.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040951 514 IEEGLKRFPSFFNLWLMLGQLEERLGHLKEAK 545 (701)
Q Consensus 514 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 545 (701)
|+++|+.+|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666664
No 257
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.002 Score=59.58 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=51.5
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040951 467 LEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAK 545 (701)
Q Consensus 467 ~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 545 (701)
-+.....|..|+..|.+++..+|+ +..|...+.++.+..+++.+..-..+++++.|+....++.+|+.......++.|+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 333444556666666666666666 4555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 040951 546 EAYQSGC 552 (701)
Q Consensus 546 ~~~~~al 552 (701)
..++++.
T Consensus 99 ~~Lqra~ 105 (284)
T KOG4642|consen 99 KVLQRAY 105 (284)
T ss_pred HHHHHHH
Confidence 6666653
No 258
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.028 Score=50.85 Aligned_cols=116 Identities=14% Similarity=0.025 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHH
Q 040951 442 AARDILQEAYATIPNSEE---IWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFI 514 (701)
Q Consensus 442 ~A~~~l~~a~~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~ 514 (701)
+.....++....+|.+.. .-+.+++.+.+.|++++|...++.++....+ .-+-.+++.+....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444445555555555433 3345677777778888888877777755444 445566677777777777777776
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC
Q 040951 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC 558 (701)
Q Consensus 515 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 558 (701)
...-... -.+......|.++...|+-++|+..|++++...+..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 6532211 113345566777777888888888888877766443
No 259
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.29 E-value=0.46 Score=52.97 Aligned_cols=206 Identities=14% Similarity=0.026 Sum_probs=125.8
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----CHH----HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--
Q 040951 422 QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN-----SEE----IWLAAFKLEFENRELERARMLLAKARDMGGT-- 490 (701)
Q Consensus 422 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~-----~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-- 490 (701)
.++.+.+..+........+.+|..++.++-..-|. ... .--..+.+....|+++.|.++.+.++..-|.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 35666777777777888899988888877665443 111 1223566677789999999999999887665
Q ss_pred ----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC----CHHHH--HHHHHHHHHcCCHH--HHHHHHHH----Hhhh
Q 040951 491 ----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS----FFNLW--LMLGQLEERLGHLK--EAKEAYQS----GCNQ 554 (701)
Q Consensus 491 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~--~~la~~~~~~~~~~--~A~~~~~~----al~~ 554 (701)
.......+.+..-.|++++|+.+...+.+.... ...+| ..-+.++..+|... +....|.. -+..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 334555677778889999999888887766322 22333 33456677788322 22222222 2223
Q ss_pred CCCCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 555 CPNCIPLWYSLANLEEKR-NGLNGLSKARAVLSVARLKNPLNPEIW---LATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 555 ~p~~~~~~~~la~~~~~~-~~~g~~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
.|.+..+....+.++... ...+...+|+..++-.....|..-..+ ..++.++...|+.++|...+.......-
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 444433332222222210 003445556666655555555544333 3678899999999999988887766543
No 260
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.19 E-value=0.00067 Score=64.91 Aligned_cols=91 Identities=18% Similarity=0.308 Sum_probs=59.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh-hhccCCCHHHHHHHHHHHHHhC
Q 040951 514 IEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE-KRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 514 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
|.++-..+|+++.+|..++......|.+.+...+|.++++.+|.++++|+.-+.... . .++++.++.+|.+++..+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~---~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE---IANIESSRAMFLKGLRMN 172 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh---hccHHHHHHHHHhhhccC
Confidence 444555566667777777666666666777777777777777777777766444332 3 566777777777777777
Q ss_pred CCCHHHHHHHHHHHH
Q 040951 593 PLNPEIWLATIRAES 607 (701)
Q Consensus 593 p~~~~~~~~l~~~~~ 607 (701)
|++|.+|..+.+++.
T Consensus 173 ~~~p~iw~eyfr~El 187 (435)
T COG5191 173 SRSPRIWIEYFRMEL 187 (435)
T ss_pred CCCchHHHHHHHHHH
Confidence 777777766666543
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.17 E-value=0.045 Score=58.97 Aligned_cols=172 Identities=19% Similarity=0.126 Sum_probs=110.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH------H----HcCChHHHHH
Q 040951 377 AIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP-QAEVLWLMGAKEK------W----LAGDVPAARD 445 (701)
Q Consensus 377 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~------~----~~g~~~~A~~ 445 (701)
-+|.-++..-|... ..+..+.--.|+.+.++..+.++.+... ..+-+-+.+-..+ . ...+.+.|.+
T Consensus 178 G~f~L~lSlLPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 35666677776443 3444444556888888888888876322 1222211111111 0 2345677888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-----ERVWMKSAIVERELGNNAEERGFIEEGLKR 520 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 520 (701)
++.......|++.-..+..|+++...|+.++|++.|++++..... .-.++.++.++..++++++|...|.+..+.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 888888888887777778888888888888888888887753322 334566677777778888888888888777
Q ss_pred CCCCHHHH-HHHHHHHHHcCCH-------HHHHHHHHHH
Q 040951 521 FPSFFNLW-LMLGQLEERLGHL-------KEAKEAYQSG 551 (701)
Q Consensus 521 ~p~~~~~~-~~la~~~~~~~~~-------~~A~~~~~~a 551 (701)
+..+..+| +..|-++...++. ++|.+.|.++
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 66654433 3445556666766 5566665554
No 262
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.41 Score=49.43 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=99.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYATI---PN-------SEEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMK 496 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~~---p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~ 496 (701)
+-+-.-.|++.+|++.+..+.+.+ |. ...+...+|......|.++.|...|..+.+.... .-.-..
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 333445777777777766655543 33 1224445555556667777777777777765544 223344
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HH
Q 040951 497 SAIVERELGNNAEERGFIEEGLKRFPSF----------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IP 560 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 560 (701)
++..|...|+-+.--++++. +.|.+ ..+++..|.....++++.+|+..+.+.++..... .-
T Consensus 410 lAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 56666666654443333332 22321 2356666666777788888888887777754211 22
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC---CCCH-HHHHH--HHHHHHhcCC
Q 040951 561 LWYSLANLEEKRNGLNGLSKARAVLSVARLKN---PLNP-EIWLA--TIRAESKHGN 611 (701)
Q Consensus 561 ~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~-~~~~~--l~~~~~~~g~ 611 (701)
....++.+... .|+..+++....-++... |+.+ .+|.. +-.++...|+
T Consensus 487 ~LvLLs~v~ls---lgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 487 SLVLLSHVFLS---LGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHH---hcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 34556666666 777777777776665543 4433 23322 3345555665
No 263
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.11 E-value=0.079 Score=55.62 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=43.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKK--SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
..+|+.-+|..++..++-..|... .+.+.+|.++.+.|...+|--++..|+...|.-..-++.++.++...+++....
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~ 303 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSV 303 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhh
Confidence 344555555555555544433221 244455555555555555555555444444433333445555555555555555
Q ss_pred HHHHHHHHhCCC
Q 040951 445 DILQEAYATIPN 456 (701)
Q Consensus 445 ~~l~~a~~~~p~ 456 (701)
..|..+.+..|.
T Consensus 304 ~~ydha~k~~p~ 315 (886)
T KOG4507|consen 304 LCYDHALQARPG 315 (886)
T ss_pred hhhhhhhccCcc
Confidence 555555555544
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.066 Score=48.50 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhccCCCHHHHH
Q 040951 509 EERGFIEEGLKRFPSFF---NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
+.....++....+|.+. -.-+.++..+...|++++|...++.++....+. .-+-.+++++..+ .|.+++|.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q---~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ---QKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH---hhhHHHHH
Confidence 44555566666665542 234566777788899999999998887644333 3457788888888 89999998
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 583 AVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
..++...... -.+......|+++...|+.++|+..|+++++..++.
T Consensus 147 ~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 8887643211 112345567888899999999999999999887543
No 265
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.00 E-value=0.0012 Score=41.85 Aligned_cols=33 Identities=24% Similarity=0.520 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 661 HVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 661 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
.+++.+|.++...|++++|...|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999964
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.92 E-value=0.037 Score=49.29 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAY 451 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~ 451 (701)
+...++..+...|+++.|...+++++..+|.+..+|..+..++...|+...|+..|++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 444555555566666666666666666666666666666666666666666666655543
No 267
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.85 E-value=0.0028 Score=40.07 Aligned_cols=29 Identities=34% Similarity=0.576 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCC
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCP 556 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 556 (701)
|+.+|.++...|++++|++.|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444443
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.82 E-value=0.18 Score=52.17 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 040951 258 SEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRAL 337 (701)
Q Consensus 258 ~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~ 337 (701)
.|.++...|..++... +++. +-..++.+|-+.+.++.++.++..+|+...|.+++++++-.+
T Consensus 9 ~Y~~~q~~F~~~v~~~--Dp~~----------------l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~ 70 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH--DPNA----------------LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF 70 (360)
T ss_pred HHHHHHHHHHHHHHcc--CHHH----------------HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4566666676666543 2222 223457899999999999999999999999999999987653
No 269
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.018 Score=53.64 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
.++.++++++...|++-++++.....+...|.+..+++..|..... .=+..+|...|..++..+|.-.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa---~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA---VWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh---hcCHHHHHHHHHHHHhcChhhH
Confidence 4667777777777777777777777777777777777777777766 6667777777777777777543
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.046 Score=48.69 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=73.4
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCC
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~ 577 (701)
+......|+...++..+.+++.......-.-... ..-....+..++.. ...+...++..+.. .|+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~---~~~ 77 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLE---AGD 77 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHH---TT-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh---ccC
Confidence 3444566788888888888888764421000000 11112222333332 12456677777888 899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 578 LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
+++|...+++++..+|.+..+|..+..++...|+...|...|++....
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887543
No 271
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.041 Score=51.33 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=57.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTV--------FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL 436 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 436 (701)
.+...|+|.+|...|..++.. .|..++ |..+. .....+++.+++++..
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLd-----------------------k~~tpLllNy~QC~L~ 242 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELD-----------------------KMITPLLLNYCQCLLK 242 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHH-----------------------HhhhHHHHhHHHHHhh
Confidence 347888999999988887643 244432 21111 1122344555555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 040951 437 AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT 490 (701)
Q Consensus 437 ~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~ 490 (701)
.|++-++++.....+...|.+..+++..++.....=+..+|..-|.+++...|.
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 555555555555555555555555555555555555555555555555555555
No 272
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.73 E-value=0.19 Score=51.92 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=19.2
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040951 418 TYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYA 452 (701)
Q Consensus 418 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~ 452 (701)
..+|.+.+.++.++.++..+|+.+.|.+++++|+-
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555543
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.72 E-value=0.9 Score=46.75 Aligned_cols=123 Identities=18% Similarity=0.035 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHH---HHHHHHH----HcCcHHHHHHHHHHHHh---cCCC----H
Q 040951 427 WLMGAKEKWLAGD-VPAARDILQEAYATIPNSEEIWL---AAFKLEF----ENRELERARMLLAKARD---MGGT----E 491 (701)
Q Consensus 427 ~~~~a~~~~~~g~-~~~A~~~l~~a~~~~p~~~~~~~---~la~~~~----~~~~~~~A~~~~~~a~~---~~p~----~ 491 (701)
...-|+-+|..|. -++|+.+++.+++..|.+...-. .+.+... ....+.+-..+ +.++. +.|. .
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL-e~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKL-EDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHhcCCCcccccHH
Confidence 3445677888777 78899999999988887654221 1111111 11112222221 22222 2222 3
Q ss_pred HHHHHH--HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 492 RVWMKS--AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 492 ~~~~~~--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
++-..+ |.+++.+|++.++.-+-.=..+..| ++.++..+|.+.....+|++|-.++...
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344444 5667889999999988888889999 6999999999999999999999998764
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.69 E-value=0.0038 Score=39.53 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCC
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPS 523 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 523 (701)
+|+.+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 275
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.26 Score=51.83 Aligned_cols=247 Identities=18% Similarity=0.174 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCcHHHHHHHHH
Q 040951 407 ESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEE----IWLAAFKLEFENRELERARMLLA 482 (701)
Q Consensus 407 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~ 482 (701)
+...+.+.......|.+....++.++.+...|+.+.|+..++..+. +.-.+ .+...+.++.-..++.+|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555566667888888888888888888887778888877766 22222 33456666777778888888888
Q ss_pred HHHhcCCCHHHHHHH-H-HHH--------HHhCChHHHHHHHHHH---HHhCCCCHH---HHHHHHHHHHHcCCHHHHHH
Q 040951 483 KARDMGGTERVWMKS-A-IVE--------RELGNNAEERGFIEEG---LKRFPSFFN---LWLMLGQLEERLGHLKEAKE 546 (701)
Q Consensus 483 ~a~~~~p~~~~~~~~-a-~~~--------~~~g~~~~A~~~~~~a---l~~~p~~~~---~~~~la~~~~~~~~~~~A~~ 546 (701)
...+...-...++.+ + -++ ...|+.++|..+++.. +...|.+.. .....++-+...+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------ 401 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------ 401 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence 887766544444333 2 222 1123555544444333 222232211 11111111111110
Q ss_pred HHHHHhhhCCCCHH--HHHHHHHHHhhhccCCCHHHH---HHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 547 AYQSGCNQCPNCIP--LWYSLANLEEKRNGLNGLSKA---RAVLSVARLKNPLNP-EIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 547 ~~~~al~~~p~~~~--~~~~la~~~~~~~~~g~~~~A---~~~~~~a~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
..+..+. .++.++.++..+. .....+. +..++.--..++++. --++.+|.++...|+...|..+|.
T Consensus 402 -------~~~~~~la~P~~El~Y~Wngf~-~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 402 -------LNASILLASPYYELAYFWNGFS-RMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred -------ccccccccchHHHHHHHHhhcc-cCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111111 1233333332200 1222222 222221111122221 245667889999999999999998
Q ss_pred HHHHhCCC-CHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCC
Q 040951 621 KALQKCPN-SGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRK-VDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 621 ~al~~~p~-~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~ 693 (701)
..++..-. ....|. -|.+++.+|.++|..|. ..+++.|+.+|-....++
T Consensus 474 i~~~~e~~~~~d~w~------------------------~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWA------------------------VPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHhhcccccc------------------------ccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 88754211 001121 38899999999999988 999999999998876554
No 276
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.66 E-value=0.003 Score=64.76 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=81.7
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 040951 465 FKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE 543 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 543 (701)
+.-....+.++.|+.+|.++++..|+ ...+-..+..+...+++..|+.-+.++++..|.....|+..|..+...+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 44555667788888888888888887 66666666777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 544 AKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 544 A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
|...|+......|+.+.+...+..+..
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 888888888888888777666665544
No 277
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.63 E-value=0.0032 Score=64.59 Aligned_cols=107 Identities=15% Similarity=0.039 Sum_probs=97.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCh
Q 040951 429 MGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNN 507 (701)
Q Consensus 429 ~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~ 507 (701)
.-+......++++.|+..|.++++.+|++..++-..+..+...+++..|+.-+.++++..|+ ...|+..|..+...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34556667889999999999999999999988888999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQLE 535 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~~ 535 (701)
.+|...|+......|+++.+...+-.+-
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999998887776663
No 278
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.63 E-value=0.88 Score=52.70 Aligned_cols=341 Identities=11% Similarity=-0.031 Sum_probs=174.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHhcc--------------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 040951 258 SEEEARILLHRAVECCPLDVELWLALARLE--------------TYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNT 323 (701)
Q Consensus 258 ~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~--------------~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~ 323 (701)
.|+.|...|.+.....|.-.+.+-+..+.| .+++|...|++... .|.-|--++.-|.+|.+.|++
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 490 LYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhH
Confidence 688999999999999998776665544432 35566666655432 356677888889999999999
Q ss_pred hHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 324 SMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTH 403 (701)
Q Consensus 324 ~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 403 (701)
++-++.+.-+++..|.++..+....-+.+-.-. ....+...|....--++..-|.....-..---+..-+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (932)
T PRK13184 569 NEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE----------SLYKHRREALVFMLLALWIAPEKISSREEEKFLEILY 638 (932)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 999999999999999887543222222111000 1112223444444455556665543221110000001
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Q 040951 404 GSRESLIALLRKAVTYFPQAEVLW---LMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML 480 (701)
Q Consensus 404 g~~~~A~~~~~~al~~~p~~~~~~---~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 480 (701)
+.++... .+ ..++...... +.+--.+ -.|..---.++++++....|- .+......+....|+++-+.+.
T Consensus 639 ~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 710 (932)
T PRK13184 639 HKQQATL-FC----QLDKTPLQFRSSKMELFLSF-WSGFTPFLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQF 710 (932)
T ss_pred hhccCCc-ee----eccCchhhhhhhhHHHHHHH-HhcCchhhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHH
Confidence 1110000 00 0111111111 1111112 245555556677777776543 5555556666778888766665
Q ss_pred HHHHHhcC-----CCHH---H------HHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHH
Q 040951 481 LAKARDMG-----GTER---V------WMKSAIVERELGNNAEERGFIEEGLKRFPSFFNL-WLMLGQLEERLGHLKEAK 545 (701)
Q Consensus 481 ~~~a~~~~-----p~~~---~------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~A~ 545 (701)
........ |..- . |..-........+++++...+.. ..|..... ...++.-....++.+.-.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (932)
T PRK13184 711 SDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLDEEGESII 787 (932)
T ss_pred HHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHhccchHHH
Confidence 55444211 1111 1 22222223333355555443221 22221110 111111111222222222
Q ss_pred HHHHHHhhhCCC----CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040951 546 EAYQSGCNQCPN----CIPLWYSLANLEEKRNGLNGLSKARAVLSVARL--KNPLNPEIWLATIRAESKHGNKKEADSFI 619 (701)
Q Consensus 546 ~~~~~al~~~p~----~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 619 (701)
...+. +...+. ...+.......+.. ..+..+|-+++.+.-. ...+...++..+|..+.-.++.+.|...|
T Consensus 788 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (932)
T PRK13184 788 QLLQL-IYDYVSEEERHDHLLVYEIQAHLW---NRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHF 863 (932)
T ss_pred HHHHH-HHhccCChhhhhhhhHHHHHHHHH---hccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHH
Confidence 22222 222222 12334445556666 7889999888854321 12344578888999888899999999999
Q ss_pred HHHHH
Q 040951 620 AKALQ 624 (701)
Q Consensus 620 ~~al~ 624 (701)
..+.+
T Consensus 864 ~~~~~ 868 (932)
T PRK13184 864 SGCRE 868 (932)
T ss_pred hhccc
Confidence 88874
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.60 E-value=0.19 Score=47.66 Aligned_cols=205 Identities=14% Similarity=0.164 Sum_probs=136.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKS----IWLKAAQLEKTHGSRESLIALLRKAVTYF------PQAEVLWLMGAKEKWL 436 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~ 436 (701)
....+.++|+.-|+++++..|...+ +......+..+.|++++....|.+.+..- ..+.............
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 4556889999999999999887643 56677788899999999988888776431 1122222222222233
Q ss_pred cCChHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHHcCcHHHHHHHHHHHHhcCCC-------------HHHHHHH
Q 040951 437 AGDVPAARDILQEAYATI--PNSEEIWL----AAFKLEFENRELERARMLLAKARDMGGT-------------ERVWMKS 497 (701)
Q Consensus 437 ~g~~~~A~~~l~~a~~~~--p~~~~~~~----~la~~~~~~~~~~~A~~~~~~a~~~~p~-------------~~~~~~~ 497 (701)
..+.+--..+|+..+..- ..+..+|+ .++.++...++|.+-.+++.+.-..+.+ ..+|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 445555555665555432 33566776 5899999999999988888877654321 3455555
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCC--HHHH----HHHHHHHHHcCCHHHHHHHHHHHhhhCCCC-----HH--HHHH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSF--FNLW----LMLGQLEERLGHLKEAKEAYQSGCNQCPNC-----IP--LWYS 564 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~--~~~~ 564 (701)
.++|..+.+..+-..+|++++.....- |.+. -.-|.++.+.|.+++|..-|-.+++....+ .. -++.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 777888888888889999998875332 2221 112345778899999998888888754332 22 2555
Q ss_pred HHHHHhh
Q 040951 565 LANLEEK 571 (701)
Q Consensus 565 la~~~~~ 571 (701)
++..+..
T Consensus 278 LANMLmk 284 (440)
T KOG1464|consen 278 LANMLMK 284 (440)
T ss_pred HHHHHHH
Confidence 6666665
No 280
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.49 E-value=0.0043 Score=38.80 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=23.6
Q ss_pred hcHHHHHHHHHHHhhhCCCCHHHHHHHHhhc
Q 040951 166 KEEAAARKLITKGCNMCPKNEDVWLEACRLA 196 (701)
Q Consensus 166 g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~ 196 (701)
|+++.|+.++++++..+|.+.++|+.++.++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4567788888888888888888888777654
No 281
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.49 E-value=2.1 Score=48.20 Aligned_cols=166 Identities=14% Similarity=0.084 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhhCCCCHH----HHHHHHhh-----cCcchHHHHHHHHHHhCCC--cHHHHHH----HHHc--ccCHH
Q 040951 168 EAAARKLITKGCNMCPKNED----VWLEACRL-----ARPDEAKGVVAKGVRQIPK--SVRLWLQ----AAEL--DHDKA 230 (701)
Q Consensus 168 ~~~A~~~~~~~~~~~P~~~~----~wl~~~~l-----~~~~~A~~~l~~al~~~P~--~~~lw~~----~~~l--e~~~~ 230 (701)
+..|.+.++-+++..+-++. +.+..+.+ +..+.|+..+.+++...-+ -.++-.. ++.+ ..++.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 45666677677754444443 34555554 2456899999999877744 2222111 1222 22666
Q ss_pred HHHHHHHHHHHhcCC---CHHHHH-HHHh------hcCHHHHHHHHHHHHHHC--CCCHHHHHH------HH--hccChH
Q 040951 231 NKSRVLRMALDEIPD---SVRLWK-ALVE------ISSEEEARILLHRAVECC--PLDVELWLA------LA--RLETYG 290 (701)
Q Consensus 231 ~a~~~l~kal~~~P~---~~~l~~-~~~~------l~~~~~A~~~l~~a~~~~--P~~~~l~~~------l~--~l~~~~ 290 (701)
.|.+.++++++..-+ +.-.|. .+++ ..++..|...++...... +.++.+... ++ +.+.++
T Consensus 117 ~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 117 AALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 689999998886544 211111 1221 148888999999888765 455544332 11 125677
Q ss_pred HHHHHHHHHHHhC----------CCCHHHHHHHHHHH--HHcCChhHHHHHHHHH
Q 040951 291 VARSVLNKARKKL----------PKERAIWIAAAKLE--EANGNTSMVGKIIERG 333 (701)
Q Consensus 291 ~A~~~l~~a~~~~----------p~~~~~~~~~a~~~--~~~g~~~~a~~~~~~a 333 (701)
++.+.++++.... +....+|..+.++. ...|++..+...+++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7877777774322 22356676666554 4556666555544443
No 282
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=3.8 Score=51.09 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC----------C
Q 040951 389 KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI-PN----------S 457 (701)
Q Consensus 389 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~-p~----------~ 457 (701)
-.+.|+..|++.+..|.++.|...+-.|.+.. -+.+....|+.+|..|+...|+.++++.+..+ |+ +
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 35699999999999999999999988887765 57889999999999999999999999999765 33 1
Q ss_pred H------HHHHHHHHHHHHcCcH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHH------------HhCChHH---HHHH
Q 040951 458 E------EIWLAAFKLEFENREL--ERARMLLAKARDMGGT-ERVWMKSAIVER------------ELGNNAE---ERGF 513 (701)
Q Consensus 458 ~------~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~p~-~~~~~~~a~~~~------------~~g~~~~---A~~~ 513 (701)
. .+.+.++......+++ ....+.|..+.+..|. ..-++.+|.+|. ..|++.. ++..
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~ 1826 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYF 1826 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHH
Confidence 1 1334444555555554 4567788888888885 444444443321 2344444 4444
Q ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHH---cC-------CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccC
Q 040951 514 IEEGLKRF--------PSFFNLWLMLGQLEER---LG-------HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL 575 (701)
Q Consensus 514 ~~~al~~~--------p~~~~~~~~la~~~~~---~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 575 (701)
|.+++... |.-..+|..+|..... .+ +...--...+.++...|.. ..+..+.++..+. .
T Consensus 1827 ~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y-~f~ta~sQLlSRi--c 1903 (2382)
T KOG0890|consen 1827 FGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY-QFYTAYSQLLSRI--C 1903 (2382)
T ss_pred HHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHH--c
Confidence 45555443 2223355554443322 11 2222233344455555544 2223333333321 1
Q ss_pred CCHHHHH----HHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 576 NGLSKAR----AVLSVARLKNPLNPEIWLATIRAESK-HGNKKEADSFIAKALQKCPNSGILW 633 (701)
Q Consensus 576 g~~~~A~----~~~~~a~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~l~ 633 (701)
...++.. .+..+.+...|.. .+|...+.+-.. ..+...+..++.++....|+...+.
T Consensus 1904 H~~~dV~~vl~~II~~l~~~YPqq-~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~~~l~ 1965 (2382)
T KOG0890|consen 1904 HPNQDVARVLKHIIAKLVLAYPQQ-TLWQSAALSKSNVPSRVERCKEILTKSRRQKPDYKKLL 1965 (2382)
T ss_pred CCchHHHHHHHHHHHHHHHhCchH-HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 1112222 3333444455644 456555443221 1234556666666666666554433
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.49 E-value=2.1 Score=48.08 Aligned_cols=248 Identities=15% Similarity=0.028 Sum_probs=156.3
Q ss_pred HHHHHHHhCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCC---HHHHHHHHHHHHHcCCcHHHH
Q 040951 295 VLNKARKKLPK-----ERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVID---RDTWMKEAEIAEKAGSDAEEC 366 (701)
Q Consensus 295 ~l~~a~~~~p~-----~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~---~~~w~~~a~~~e~~~~~a~~~ 366 (701)
.+..+++..|. ++..-+..+........+.+|..++.++....+....... ...|..+. |.+.
T Consensus 398 ll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~---------a~va 468 (894)
T COG2909 398 LLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALR---------AQVA 468 (894)
T ss_pred HHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHH---------HHHH
Confidence 34445555554 4677788888888899999999999999888766432211 22333322 3345
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHH--HHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKK-----SIWLKAAQLEKTHGSRESLIALLRKAVTYF----PQAEVLWL--MGAKEKW 435 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~--~~a~~~~ 435 (701)
...|+++.|..+.+.++..-|.+. .+....+.+..-.|++++|..+...+.+.. .....+|. .-+.++.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 889999999999999999887653 466677888888999999999998887762 22233343 3355666
Q ss_pred HcCChHHHH--HHHHH----HHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----cCCC---H-HHHHHHHHHH
Q 040951 436 LAGDVPAAR--DILQE----AYATIPNSEEIWLAAFKLEFENRELERARMLLAKARD----MGGT---E-RVWMKSAIVE 501 (701)
Q Consensus 436 ~~g~~~~A~--~~l~~----a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~p~---~-~~~~~~a~~~ 501 (701)
.+|+...+. ..+.. -+..-|-+.......+.++...-+++.+..-....+. ..|. . -..+.++.++
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 788433322 22222 2223355444555555554444445555554444443 3343 1 2234778999
Q ss_pred HHhCChHHHHHHHHHHHHhCCCC--HHHHH---HHHH--HHHHcCCHHHHHHHHHHH
Q 040951 502 RELGNNAEERGFIEEGLKRFPSF--FNLWL---MLGQ--LEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~---~la~--~~~~~~~~~~A~~~~~~a 551 (701)
...|++++|...+.+......+. ...|. ..+. +...+|+...+.....+.
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999999998876654332 11121 1222 234678999988888773
No 284
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.40 E-value=0.0062 Score=38.12 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 661 HVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 661 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999999974
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.39 E-value=1.5 Score=45.30 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHH-H--Hh------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040951 258 SEEEARILLHRAVECCPLDVELWLA-L--AR------LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGK 328 (701)
Q Consensus 258 ~~~~A~~~l~~a~~~~P~~~~l~~~-l--~~------l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~ 328 (701)
++.+|.++|.|......+++.+... + .+ +++.+.-...+-...+..|.++-+.+-.|-...+.+.+.+|..
T Consensus 21 ~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~ 100 (549)
T PF07079_consen 21 KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQ 100 (549)
T ss_pred hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHH
Confidence 7888888888888776666443331 0 11 2566777777777778889888888888888999999999998
Q ss_pred HHHHHHHHhhcCccc--------CCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 329 IIERGIRALQGEEVV--------IDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVF 386 (701)
Q Consensus 329 ~~~~a~~~~~~~~~~--------~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 386 (701)
.+...-......... .-...|+... .|......|.+.+++.++.+.+...
T Consensus 101 ~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i--------~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 101 ALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEI--------EAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHhhhcccccchhhhhHHHHhhHHHHHHH--------HHHHHHhcCCcchHHHHHHHHHHHH
Confidence 888876653333211 1122343333 3566799999999999999988654
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=0.38 Score=51.77 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040951 517 GLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQS 550 (701)
Q Consensus 517 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 550 (701)
....-|++..++-.+|+++...|.-++|.+.|-+
T Consensus 844 la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 844 LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 3444588888888888888888888888888765
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.21 E-value=0.0043 Score=39.93 Aligned_cols=31 Identities=16% Similarity=0.479 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 662 VFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 662 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
++..+|.+|...|++++|+++|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3678999999999999999999997655433
No 288
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=1.7 Score=41.90 Aligned_cols=269 Identities=16% Similarity=0.123 Sum_probs=145.9
Q ss_pred HHHhccChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHH
Q 040951 282 ALARLETYGVARSVLNKARKKL--------PKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEA 353 (701)
Q Consensus 282 ~l~~l~~~~~A~~~l~~a~~~~--------p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a 353 (701)
...+-.++++|+..|.+.+... .........++.++...|++......+... +..|..+.
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s------------re~m~~ft 79 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS------------REAMEDFT 79 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh------------HHHHHHhc
Confidence 3333445555555555554431 112345667888888888887766555444 44554332
Q ss_pred HHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 040951 354 EIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKS---IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMG 430 (701)
Q Consensus 354 ~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 430 (701)
. .+...+.+..++.+|..+. -.......+..-.+. +-+..++. .+-..+
T Consensus 80 k------------------~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~r-Ekr~fLr~---------~Le~Kl 131 (421)
T COG5159 80 K------------------PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADR-EKRKFLRL---------ELECKL 131 (421)
T ss_pred c------------------hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHH
Confidence 1 2334566666666664432 222222111111000 11122222 233456
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----CC---HHHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYATI------PNSEEIWLAAFKLEFENRELERARMLLAKARDMG-----GT---ERVWMK 496 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----p~---~~~~~~ 496 (701)
+..+...|.+..|+......+... |+-..+++.-.++|....+..++...+..+.... |. ..+-..
T Consensus 132 i~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~ 211 (421)
T COG5159 132 IYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLL 211 (421)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 677788899999888776655432 4445577777888888888888887777666532 22 333344
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhCCC---CHHH-----HHHHHHHHHHcCCHHHHHHHHH--HHhh-hCCCCHHHHHHH
Q 040951 497 SAIVERELGNNAEERGFIEEGLKRFPS---FFNL-----WLMLGQLEERLGHLKEAKEAYQ--SGCN-QCPNCIPLWYSL 565 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~-----~~~la~~~~~~~~~~~A~~~~~--~al~-~~p~~~~~~~~l 565 (701)
.|.++....+|..|..+|-++++-+.. +..+ |+.+.++. .+..++...++. ..++ .......+....
T Consensus 212 sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~am~av 289 (421)
T COG5159 212 SGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRAMLAV 289 (421)
T ss_pred ccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHHHHHH
Confidence 466666778899999999998887643 2332 33344443 233344333332 1222 122335555555
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 566 ANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 566 a~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
+..+.. ....++..|+..|..-+..+|
T Consensus 290 aea~~N-RsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 290 AEAFGN-RSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHhCC-CcHhhHHHHHHHhhHHhccCH
Confidence 555442 014577777777776665554
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.92 E-value=0.0079 Score=58.94 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=41.3
Q ss_pred cCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040951 471 NRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQ 549 (701)
Q Consensus 471 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 549 (701)
.|.++.|++.|..++..+|. ..++...+.++..++....|+.-+..++.++|+...-|...+.....+|++++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555555554444 44444444444455555555555555555555544444444444444555555555555
Q ss_pred HHhhh
Q 040951 550 SGCNQ 554 (701)
Q Consensus 550 ~al~~ 554 (701)
.++++
T Consensus 207 ~a~kl 211 (377)
T KOG1308|consen 207 LACKL 211 (377)
T ss_pred HHHhc
Confidence 44443
No 290
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=95.85 E-value=0.27 Score=42.20 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcC---CCHHHHHHHHhhc--------CHHHHHHHHHHHHHHCCCC---------HHHHHHHHhccChHH
Q 040951 232 KSRVLRMALDEIP---DSVRLWKALVEIS--------SEEEARILLHRAVECCPLD---------VELWLALARLETYGV 291 (701)
Q Consensus 232 a~~~l~kal~~~P---~~~~l~~~~~~l~--------~~~~A~~~l~~a~~~~P~~---------~~l~~~l~~l~~~~~ 291 (701)
.++.|+..+.... +-...|..++.-- ....-..++++++....++ ..+|+.++++.+ +
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~ 81 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--D 81 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--H
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--C
Confidence 3455555555444 2233566655321 2344456777777665543 367888888766 8
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040951 292 ARSVLNKARKKL--PKERAIWIAAAKLEEANGNTSMVGKIIERGI 334 (701)
Q Consensus 292 A~~~l~~a~~~~--p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~ 334 (701)
+..+|..+.... -.....|..+|.+++..|++.+|.++|+.++
T Consensus 82 ~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 82 PREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 888888887654 4568999999999999999999999999875
No 291
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.80 E-value=0.42 Score=45.45 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=56.6
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPL------------NPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 631 (701)
.++.++.. .|.+.+-..++.+.-..+.. --++|..-+.+|....+...-..+|++++.....-|
T Consensus 150 KLgkl~fd---~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP- 225 (440)
T KOG1464|consen 150 KLGKLYFD---RGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP- 225 (440)
T ss_pred hHhhhhee---HHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-
Confidence 35555555 55555555555544333211 114555566777777777777788888776533211
Q ss_pred HHHHHHhcCCCccchhHHHHHHHhcCCChHHHHH----HHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 040951 632 LWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAA----VAKLFWHDRKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 632 l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~----lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 694 (701)
+|-++-. =|..+.+.|++++|-.-|=.|++.....|
T Consensus 226 ---------------------------HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 226 ---------------------------HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG 265 (440)
T ss_pred ---------------------------chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC
Confidence 1322222 24566777888888877777776544433
No 292
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=1.2 Score=47.25 Aligned_cols=173 Identities=16% Similarity=0.075 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 040951 258 SEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRAL 337 (701)
Q Consensus 258 ~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~ 337 (701)
.|++|...|.-++...+.+. ....+...|-+.+..+.++.+...+|+.+.+..++++++-.+
T Consensus 253 sYeqaq~~F~~av~~~d~n~------------------v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~ 314 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNN------------------VLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVF 314 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcc------------------eeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 66777777777766554431 011223458889999999999999999999999999987642
Q ss_pred hcC---------c-------ccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 040951 338 QGE---------E-------VVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLT-KKSIWLKAAQLE 400 (701)
Q Consensus 338 ~~~---------~-------~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 400 (701)
... + ....+..|+.+-... ....++|.+..|.+..+-+++.+|. ++-....+++++
T Consensus 315 d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m-------~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 315 DRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYM-------QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred HHHhccccccccccccCcccchhhHHHHHHHHHHH-------HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 211 0 001222222211111 1225666777777777777777666 555444444443
Q ss_pred H-HcCCHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC
Q 040951 401 K-THGSRESLIALLRKAV-----TYFPQAEVLWLMGAKEKWLAGD---VPAARDILQEAYATIPN 456 (701)
Q Consensus 401 ~-~~g~~~~A~~~~~~al-----~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~l~~a~~~~p~ 456 (701)
. +..+|+=.+.+++..- ...|+. ..-+.+|.++..... -+.|...+.+|+...|.
T Consensus 388 ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 388 ALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2 4445555555554442 222322 223344444444332 34555666666666553
No 293
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.74 E-value=0.019 Score=36.21 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCC
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCP 556 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 556 (701)
|+.+|.++...|++++|...|+++++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444444444444444444444444433
No 294
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.86 Score=48.28 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=114.4
Q ss_pred HhcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---------
Q 040951 367 KKRGSIETARAIFSHACTV------------FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY-----F--------- 420 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~--------- 420 (701)
.....|++|...|.-++.. .|.+....+.++.+...+|+.+.+..+.++++-. +
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 3455677777777776654 3667788999999999999999988888887621 2
Q ss_pred -------CCcHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCcHHHHHHHHHHHHh--
Q 040951 421 -------PQAEVLW---LMGAKEKWLAGDVPAARDILQEAYATIPN-SEEIWLAAFKLE-FENRELERARMLLAKARD-- 486 (701)
Q Consensus 421 -------p~~~~~~---~~~a~~~~~~g~~~~A~~~l~~a~~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~-- 486 (701)
|.+-.+| +.+...+.+.|-+..|.++..-.+..+|. ++-..+.++..| .+..+|+=-+++++..-.
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 2333333 34455566789999999999999999998 887777777666 456788888888877643
Q ss_pred ---cCCCHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHhCCC
Q 040951 487 ---MGGTERVWMKSAIVERELGN---NAEERGFIEEGLKRFPS 523 (701)
Q Consensus 487 ---~~p~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~ 523 (701)
..|+...-..++.++..... -..|...+.+|+..+|.
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 34554444556666666554 56788899999999985
No 295
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.69 E-value=0.013 Score=57.43 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=47.3
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
..|.++.|+..|..++.++|....+|...+.++..+++...|+.-+..++.++|++..-+-..+..... .|++.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl---lg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL---LGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH---hhchHHHH
Confidence 345555555555555555555555555555555555555555555555555555554444444444444 55555555
Q ss_pred HHHHHHHHhC
Q 040951 583 AVLSVARLKN 592 (701)
Q Consensus 583 ~~~~~a~~~~ 592 (701)
..|..+.+.+
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 5555555443
No 296
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.64 E-value=0.022 Score=35.51 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
++.+|.++...|++++|+..|+++++.+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444443
No 297
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.071 Score=52.21 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=57.7
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcC---CC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 464 AFKLEFENRELERARMLLAKARDMG---GT--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL 538 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~---p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 538 (701)
-|.-|...++|..|+..|.+.++.. |+ ...|...+.+....|+|..|+.-..+++...|.+..+++.-+.++..+
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 4555555566666666666666532 22 444555566666667777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhhhC
Q 040951 539 GHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 539 ~~~~~A~~~~~~al~~~ 555 (701)
..+..|....+.++..+
T Consensus 167 e~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 77666666666654433
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.50 E-value=3 Score=42.02 Aligned_cols=161 Identities=13% Similarity=-0.081 Sum_probs=72.5
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCCh
Q 040951 436 LAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFEN----RELERARMLLAKARDMGGTERVWMKSAIVERE----LGNN 507 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~----~g~~ 507 (701)
..+++..+...+..+-... +......++.++... .+..+|...|..+... ..+...+.++.++.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-GLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-ccHHHHHhHHHHHhcCCCcccCH
Confidence 3556666777766665522 123333444444332 3455566666533221 124444555555443 2255
Q ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhh-ccCCCH
Q 040951 508 AEERGFIEEGLKRFPSF-FNLWLMLGQLEERLG-------HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKR-NGLNGL 578 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~g~~ 578 (701)
.+|...|.++....-.. ....+.++.+|..-. +...|...|.++.... ++.....++.+|..= +...++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 56666666655543222 233445555544321 1124444554444333 344444444444320 002245
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 579 SKARAVLSVARLKNPLNPEIWLATI 603 (701)
Q Consensus 579 ~~A~~~~~~a~~~~p~~~~~~~~l~ 603 (701)
.+|..+|.++..... ...+..++
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH
Confidence 555555555554443 34444444
No 299
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.40 E-value=0.36 Score=51.89 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=106.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------HHcCCHHHHHHHHHHHhh
Q 040951 484 ARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLE----------ERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 484 a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----------~~~~~~~~A~~~~~~al~ 553 (701)
.++.+|.+++|..++......-.++.|...|-++- .+|. .++.-.++.++ .--|.+++|.+.|-.+
T Consensus 685 fiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~-dY~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~-- 760 (1189)
T KOG2041|consen 685 FIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCG-DYAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA-- 760 (1189)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc-cccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc--
Confidence 34557888888888887776666666666655431 1222 23333333332 3348888888888665
Q ss_pred hCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 040951 554 QCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN--PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 631 (701)
+..+ ....++.+ .|++-....+++..-.-..+. ..+|..+|........+++|.++|.+.-....
T Consensus 761 -drrD-----LAielr~k---lgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~---- 827 (1189)
T KOG2041|consen 761 -DRRD-----LAIELRKK---LGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTEN---- 827 (1189)
T ss_pred -chhh-----hhHHHHHh---hhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh----
Confidence 2222 22234445 666665555544322211111 25788888888888888888888876532211
Q ss_pred HHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 632 LWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 632 l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
....+..+ .....++.....-|++...+-.+|..+...|.-++|.+.|-|
T Consensus 828 ~~ecly~l----e~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 828 QIECLYRL----ELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHH----HhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 11111111 112234455566688888888899999888888888887754
No 300
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=3.3 Score=41.15 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=105.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------CC--HHH
Q 040951 428 LMGAKEKWLAGDVPAARDILQEAYATI------PNSEEIWLAAFKLEFENRELERARMLLAKARDMG------GT--ERV 493 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------p~--~~~ 493 (701)
..++.+|...++|.+|+......+... +.-.++.+.-.+.|....+..+|...+..+.... |. ..+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 456777778888888887776665432 2234466677788888888899888888777533 22 334
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhCCC---CHHH-----HHHHHHHHHHcCCHHHHHHH--HHHHhhhCCCCHHHHH
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRFPS---FFNL-----WLMLGQLEERLGHLKEAKEA--YQSGCNQCPNCIPLWY 563 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~-----~~~la~~~~~~~~~~~A~~~--~~~al~~~p~~~~~~~ 563 (701)
-+..|.++....||..|..+|-++++-+.. +..+ |+.+..+. .+..++.-.+ -+.+++.......+..
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIM--ln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIM--LNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHH--hcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 455566666668999999999999887632 2333 33344443 3444443333 3455665666777777
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
..+..+.. ....+|+.|...|..-+..+|
T Consensus 290 avAeA~~n-RSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGN-RSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcC-CcHHHHHHHHHHhHHHHhcCh
Confidence 77777653 014577777777777666555
No 301
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.37 E-value=0.027 Score=34.44 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 661 HVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 661 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
.++..+|.++...|++++|..+|+++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 567889999999999999999999999998863
No 302
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.53 Score=46.38 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF----FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA 566 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 566 (701)
..-+-.-|.-|+...+|..|+..|.++|+....+ ..+|.+.+-+....|+|..|+.-..++++..|.+..++++-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3445556888999999999999999999986543 567888999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHhC
Q 040951 567 NLEEKRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 567 ~~~~~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
.++.. ...+..|..+.+..+..+
T Consensus 161 kc~~e---Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLE---LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHH---HHHHHHHHHHHhhhhhhh
Confidence 99998 888888887777765554
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.19 E-value=0.035 Score=39.04 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 040951 661 HVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 661 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
+.++.+|..+++.|+|++|+.+.+.+++.+|+|..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 457788999999999999999999999999998654
No 304
>PRK10941 hypothetical protein; Provisional
Probab=95.16 E-value=0.22 Score=48.90 Aligned_cols=73 Identities=15% Similarity=-0.148 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 040951 495 MKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567 (701)
Q Consensus 495 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 567 (701)
..+-..+...++++.|+.+.+..+...|+++.-+.-.|.+|.+.|.+..|+.-++..++.+|+++.+-.....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3344456677777777777777777777777777777777777777777777777777777777665444433
No 305
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.14 E-value=0.081 Score=51.05 Aligned_cols=109 Identities=11% Similarity=0.030 Sum_probs=75.4
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 040951 463 AAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER---- 537 (701)
Q Consensus 463 ~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 537 (701)
..+.-....|+.++|..+|+.++...|+ ++++..+|.+....++.-+|-.+|-+++...|.+.+++.......--
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~i 200 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAI 200 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHH
Confidence 3455556788999999999999999998 99999999998888888999999999999999988888776654211
Q ss_pred cCCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHhh
Q 040951 538 LGHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEEK 571 (701)
Q Consensus 538 ~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 571 (701)
-.++-..+......+...|.+ ..+...+-..|..
T Consensus 201 D~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~ 235 (472)
T KOG3824|consen 201 DRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL 235 (472)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 112222333334444444444 4444555555543
No 306
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.08 E-value=0.032 Score=34.66 Aligned_cols=28 Identities=36% Similarity=0.786 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHhCCCcHHHHHHHHHcc
Q 040951 199 DEAKGVVAKGVRQIPKSVRLWLQAAELD 226 (701)
Q Consensus 199 ~~A~~~l~~al~~~P~~~~lw~~~~~le 226 (701)
+.|+.+|++++...|.++.+|+.++.++
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4566667777776776677776666654
No 307
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.03 E-value=0.95 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAK 483 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~ 483 (701)
+++.+++.+.+..++++|.+.|.+
T Consensus 806 Vy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 806 VYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ccchHHHHhhhhhhHHHHHHHHHH
Confidence 455555555555555555555443
No 308
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.96 E-value=4.2 Score=40.14 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 579 SKARAVLSVARLKNPLNPEIWLATIR 604 (701)
Q Consensus 579 ~~A~~~~~~a~~~~p~~~~~~~~l~~ 604 (701)
..|.+.+.++++.+|.-|..++.+-.
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 35778888999999988876665543
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.91 E-value=2.1 Score=38.01 Aligned_cols=75 Identities=17% Similarity=0.051 Sum_probs=36.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 398 QLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENR 472 (701)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~ 472 (701)
.+-...++.+++..++..+--..|..+.+-..-+.++...|++.+|+.+|+.+....|..+..--.++.++...+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 333344455555555555545555555555555555555555555555555554444444443333444443333
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.91 E-value=4.6 Score=40.34 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcC-ChhHHHHHHHHHHHHhhc-C---cccCCHHHHHHHHHHHHHcCCcHHHHHhcCCH---HHHHHHH
Q 040951 308 AIWIAAAKLEEANG-NTSMVGKIIERGIRALQG-E---EVVIDRDTWMKEAEIAEKAGSDAEECKKRGSI---ETARAIF 379 (701)
Q Consensus 308 ~~~~~~a~~~~~~g-~~~~a~~~~~~a~~~~~~-~---~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~---~~A~~~~ 379 (701)
...+..|.-....+ +++.|...++++.+.+.. . ...++........... .+..+...+.+ ++|..+.
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~-----La~~~l~~~~~~~~~ka~~~l 110 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRL-----LANAYLEWDTYESVEKALNAL 110 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHH-----HHHHHHcCCChHHHHHHHHHH
Confidence 34555566666667 888888888888877533 1 1111111111000000 12233444333 3455555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040951 380 SHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP 421 (701)
Q Consensus 380 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 421 (701)
+.+-...|+.+.++.....+....++.+.+.+.+.+++...+
T Consensus 111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 555555666666665555555556666677777777666544
No 311
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.85 E-value=0.39 Score=38.38 Aligned_cols=64 Identities=14% Similarity=-0.083 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q 040951 376 RAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA--EVLWLMGAKEKWLAGD 439 (701)
Q Consensus 376 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~g~ 439 (701)
+..+++.+..+|++..+.+.++..+...|++++|.+.+-.++..++.. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345667777788888888888888888888888888888887776644 3444444444444443
No 312
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.85 E-value=0.067 Score=51.58 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=58.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAK 432 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 432 (701)
...|+.++|..+|+.++...|+++++...++.+...+++.-+|-.+|-+++...|.+..+....++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 678899999999999999999999999999999998899999999999999999998887665544
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.82 E-value=6.3 Score=41.47 Aligned_cols=181 Identities=8% Similarity=-0.110 Sum_probs=117.6
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 385 VFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAA 464 (701)
Q Consensus 385 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~l 464 (701)
..|-+......+..+.-.+....-...++.+++.. ..+...++.++++|... ..++-..+.++..+.+-++...-..+
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34555566667777776666777777778887765 44566788888888777 56777788888888888777777778
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcC-CC------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Q 040951 465 FKLEFENRELERARMLLAKARDMG-GT------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS-FFNLWLML-GQLE 535 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~~-p~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l-a~~~ 535 (701)
+..|.. ++-+.+...|.+++... |. .++|..+..+ -..+.+.-.....+.-..... ...+.+.- -.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 877766 88888888998888643 31 4455555432 123444444444443333222 12222222 2446
Q ss_pred HHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 536 ERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 536 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
....++++|++++...++.+..+..+.-.+...+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 66778888888888888887777666666655544
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.67 E-value=2.4 Score=37.61 Aligned_cols=77 Identities=18% Similarity=0.083 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 495 MKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 495 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
+....+-...++.+.+..++.-.-.+.|+.+.+-+.-|.++...|++.+|+.+++.+....|..+..--.++.++..
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 33344445556677777777766667777777777777777777777777777777666666666666666666655
No 315
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.66 E-value=3.7 Score=44.19 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHH
Q 040951 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHAC 383 (701)
Q Consensus 346 ~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al 383 (701)
...|..+|..+ ...=+++.|+..|.++-
T Consensus 585 ~~DW~~LA~~A----------LeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 585 DTDWRELAMEA----------LEALDFETARKAYIRVR 612 (1081)
T ss_pred cchHHHHHHHH----------HhhhhhHHHHHHHHHHh
Confidence 34577766655 56667777777777653
No 316
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.60 E-value=9.2 Score=42.43 Aligned_cols=279 Identities=13% Similarity=-0.011 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 040951 371 SIETARAIFSHACTVFLTKKSIWLKAAQLEKT-----HGSRESLIALLRKAVTY-----FPQAEVLWLMGAKEKWLAG-- 438 (701)
Q Consensus 371 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~g-- 438 (701)
+...|...|+.+.+.. +......++.++.. ..+.+.|+.+|+.+... .-..+.+...+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 3466777777776553 45556666666553 35788898888888761 1124446667777777643
Q ss_pred ---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CChH
Q 040951 439 ---DVPAARDILQEAYATIPNSEEIWLAAFKLEFENR---ELERARMLLAKARDMGGTERVWMKSAIVEREL----GNNA 508 (701)
Q Consensus 439 ---~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~----g~~~ 508 (701)
+...|..+|.++-.... +...+.++.++..-. ++.+|.++|..+.... .....+.++.++..- -+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHH
Confidence 56778888888877653 344555555554433 5678888888877543 355666666665432 3677
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCCCC---HHHHHHHHH-HHhhh-ccCCCHHHHH
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQLEERL-GHLKEAKEAYQSGCNQCPNC---IPLWYSLAN-LEEKR-NGLNGLSKAR 582 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~---~~~~~~la~-~~~~~-~~~g~~~~A~ 582 (701)
.|..++.++.... ++.+...++.++.-- +.++.+.-.+.......-.. ...++..-. ..... ....+...+.
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 8888888888877 345455555544322 55555555444433322111 111111111 01100 0012445555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCC
Q 040951 583 AVLSVARLKNPLNPEIWLATIRAESKH----GNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDR 658 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~ 658 (701)
..+.++.. ..++.....++.++..- .+++.|...|.++...+
T Consensus 460 ~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-------------------------------- 505 (552)
T KOG1550|consen 460 SLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-------------------------------- 505 (552)
T ss_pred HHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--------------------------------
Confidence 55555433 33445555566555432 23566666666655443
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC
Q 040951 659 DPHVFAAVAKLFWH----DRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 659 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 692 (701)
+...+.+|.++.. .. +..|..+|.++.+.+.+
T Consensus 506 -~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 506 -AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred -hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCch
Confidence 4556667776652 23 67777888777766544
No 317
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=94.60 E-value=0.76 Score=39.46 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHhCCCCH---------HHHHHHHhcCCCccchhHHHHH--HHhcCCChHHHHHHHHHHHhcCCHHHH
Q 040951 611 NKKEADSFIAKALQKCPNSG---------ILWAELIKMVPHHDRKSKGKDA--LVKSDRDPHVFAAVAKLFWHDRKVDKA 679 (701)
Q Consensus 611 ~~~~A~~~~~~al~~~p~~~---------~l~~~~~~~~~~~~~~~~~~~a--l~~~p~~~~~~~~lg~~~~~~g~~~~A 679 (701)
....-..++++++....+++ .+|..++.+.. .....+.-. -...-..+..+...|.++...|++++|
T Consensus 41 ~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A 118 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKA 118 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHH
T ss_pred chhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34444555555555544432 34555554433 111222221 222345688999999999999999999
Q ss_pred HHHHHHHH
Q 040951 680 RNWFNKAV 687 (701)
Q Consensus 680 ~~~~~~al 687 (701)
.++|++++
T Consensus 119 ~~I~~~Gi 126 (126)
T PF08311_consen 119 DEIYQLGI 126 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
No 318
>PRK10941 hypothetical protein; Provisional
Probab=94.56 E-value=0.42 Score=47.00 Aligned_cols=70 Identities=14% Similarity=-0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
...+-.++.+.++++.|..+.+..+...|+++.-+.-.|.++.+ .|.+..|+..++..++..|+++.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q---L~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ---LDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 33444456666777777777777777777776666666766666 67777777777777777766665433
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.55 E-value=0.65 Score=37.09 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG 488 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 488 (701)
.+++.+..+|++..+.+.++..+...|+++.|++.+-.++...
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3444444445544455555555555555555554444444443
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.35 E-value=10 Score=42.00 Aligned_cols=212 Identities=12% Similarity=0.026 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChHHH
Q 040951 371 SIETARAIFSHACTVFLTKKSIWLKAAQLEKTHG---SRESLIALLRKAVTYFPQAEVLWLMGAKEKWL----AGDVPAA 443 (701)
Q Consensus 371 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A 443 (701)
++..|..+|.++.... ++...+.++.++.... +...|..+|..|... .+..+.+.++.++.. .-+...|
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 7788888888887765 3445666676666543 567888888888765 456777777777765 2367888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHH-HHHH----hCChHHHHHH
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLE-FENRELERARMLLAKARDMGGT----ERVWMKSAI-VERE----LGNNAEERGF 513 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~-~~~~----~g~~~~A~~~ 513 (701)
..++.++-+.++ +.+...++.++ ...+.++.+.-.+.......-. ...++.... .... ..+...+...
T Consensus 384 ~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 384 FAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 888888888873 33222222222 2225555555444443332211 111111110 0000 1123334444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 040951 514 IEEGLKRFPSFFNLWLMLGQLEERL----GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVAR 589 (701)
Q Consensus 514 ~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~ 589 (701)
+.++.. ..+..+...+|.+|..- .+++.|...|..+...+ ....+.++.+++.-.+...+..|..+++++.
T Consensus 462 ~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 462 YSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 443322 23345555555554332 34666666666665544 5555566665553101112456666666655
Q ss_pred HhCC
Q 040951 590 LKNP 593 (701)
Q Consensus 590 ~~~p 593 (701)
..+.
T Consensus 537 ~~~~ 540 (552)
T KOG1550|consen 537 EEDS 540 (552)
T ss_pred hcCc
Confidence 5443
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.34 E-value=0.25 Score=50.68 Aligned_cols=124 Identities=9% Similarity=-0.047 Sum_probs=81.8
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHH
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKA 581 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A 581 (701)
...|+.-.|-+-+..++...|..|......+.+....|+|+.+...+..+-.....-......+.+-... .|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~---l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG---LARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc---hhhHHHH
Confidence 3568888887777778888888888888888888888888888777766544333333333344444445 6777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 582 RAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 582 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
.+..+-.+...-.++++..-.+-.....|-++++...+.+.+..+|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 77766666655566666555555555566666666666666666653
No 322
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.33 E-value=0.35 Score=45.88 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchh
Q 040951 575 LNGLSKARAVLSVARLKN----PLN---PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKS 647 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~ 647 (701)
...++.|+..|.-|+... ++. +.+++.++++|...|+.+.....+.+|+....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~-------------------- 149 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYE-------------------- 149 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH--------------------
Confidence 445666666666555321 111 35788889999998887777777777766533
Q ss_pred HHHHHHHhcC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 648 KGKDALVKSD------RDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 648 ~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 690 (701)
+++.... +...+++.+|.+..+.|++++|..||.+++...
T Consensus 150 ---~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 150 ---EAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred ---HHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 2222211 235688899999999999999999999998754
No 323
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.32 E-value=0.076 Score=34.02 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQS 550 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~ 550 (701)
+..+|.+|...|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.07 E-value=0.92 Score=46.78 Aligned_cols=123 Identities=13% Similarity=-0.048 Sum_probs=63.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Q 040951 401 KTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML 480 (701)
Q Consensus 401 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 480 (701)
...|+.-.|-..+..++...|..|......+.+....|+++.+...+..+-..-.........+..-....|+++.|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34566666666666666666666666666666666666666666655444333332222333333444455555555555
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC
Q 040951 481 LAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS 523 (701)
Q Consensus 481 ~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 523 (701)
.+-++...-. +++....+......|-++++...+++.+.++|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 5554433222 333333333334445555555555555555554
No 325
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.71 E-value=0.74 Score=37.82 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 510 ERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 510 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
++++|.++....|.+...++.+|+-+.....|+++..-.++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44566666666666666666666655555555666665555554
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.64 E-value=0.98 Score=41.50 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 040951 427 WLMGAKEKWLAGDVPAARDILQEAYATIPN---SEEIWLAAFKLEFENRELERARMLLAKAR 485 (701)
Q Consensus 427 ~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 485 (701)
+..+|..|...|+.+.|++.|.++...+.. ..++++..+.+....+++..+.....++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344444444455555555555444443322 12234444444444455555444444443
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.37 E-value=1.3 Score=40.72 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC--CCCH----HHHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRF--PSFF----NLWL 529 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~~ 529 (701)
.+..++..|.+.|+.+.|.+.|.++.....+ ..+++...++....+++......+.++-... +.++ .+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5667888888888888888888888876544 5667777888888888888888877765543 2222 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 530 MLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 530 ~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
.-|..+...++|..|-..|-.+....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCcCC
Confidence 44445566777777777776665443
No 328
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=93.06 E-value=0.21 Score=30.57 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 040951 473 ELERARMLLAKARDMGGTERVWMKSAIVE 501 (701)
Q Consensus 473 ~~~~A~~~~~~a~~~~p~~~~~~~~a~~~ 501 (701)
++++|+.+|++.+...|++..|+.+|.+.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHhh
Confidence 56778888888888888888888887764
No 329
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=14 Score=39.40 Aligned_cols=237 Identities=11% Similarity=0.012 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHHHHHHHH
Q 040951 373 ETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE----VLWLMGAKEKWLAGDVPAARDILQ 448 (701)
Q Consensus 373 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~ 448 (701)
+.+.+.+.......|.+....+..+.++...|+.+.|...++..+. +... ..++..+.++....++..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455556666777899998888889999999998889998888876 3221 234455555666677888888888
Q ss_pred HHHHhCCCCHHHHHHHH-HHHHH--------cCcHHHHHHHHHHHHh---c----CCCHHHHHHHHHHHHHhCChHHHHH
Q 040951 449 EAYATIPNSEEIWLAAF-KLEFE--------NRELERARMLLAKARD---M----GGTERVWMKSAIVERELGNNAEERG 512 (701)
Q Consensus 449 ~a~~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~a~~---~----~p~~~~~~~~a~~~~~~g~~~~A~~ 512 (701)
.....+.-+...+..++ -++.. .|+-+.|...++.... . .|......+-+.-+...+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------ 401 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------ 401 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence 88777655555555444 22221 2344444444333322 2 1222222222221111110
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHHH--HcCCHHHH---HHHHHHHhhh-CCCCHH-HHHHHHHHHhhhccCCCHHHHHH
Q 040951 513 FIEEGLKRFPSFFN--LWLMLGQLEE--RLGHLKEA---KEAYQSGCNQ-CPNCIP-LWYSLANLEEKRNGLNGLSKARA 583 (701)
Q Consensus 513 ~~~~al~~~p~~~~--~~~~la~~~~--~~~~~~~A---~~~~~~al~~-~p~~~~-~~~~la~~~~~~~~~g~~~~A~~ 583 (701)
.++..+. .++.++.++. .....++. +..++.- +. ++++.- -++.+|.++.. .|+...|..
T Consensus 402 -------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~-~~~d~Dd~~lk~lL~g~~lR~---Lg~~~~a~~ 470 (546)
T KOG3783|consen 402 -------LNASILLASPYYELAYFWNGFSRMSKNELEKMRAELENP-KIDDSDDEGLKYLLKGVILRN---LGDSEVAPK 470 (546)
T ss_pred -------ccccccccchHHHHHHHHhhcccCChhhHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHH---cCCHHHHHH
Confidence 0111110 1122222211 11122222 2222211 11 222222 25666777778 888888888
Q ss_pred HHHHHHHhC---CC----CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCC
Q 040951 584 VLSVARLKN---PL----NPEIWLATIRAESKHGN-KKEADSFIAKALQKCPN 628 (701)
Q Consensus 584 ~~~~a~~~~---p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~ 628 (701)
.|...+... .. -|.+++.+|.++...|. ..++..++.+|-....+
T Consensus 471 ~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 471 CFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 888877432 11 24678888888888877 88888888888766544
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.91 E-value=2.8 Score=44.66 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=78.2
Q ss_pred HcCChHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHH
Q 040951 436 LAGDVPAARDILQ--EAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGF 513 (701)
Q Consensus 436 ~~g~~~~A~~~l~--~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~ 513 (701)
..++++.+..... +.+..-| .......+.++...|-++.|+.+. .+++..+.++ .+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~-------~D~~~rFeLA---l~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV-------TDPDHRFELA---LQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS-------S-HHHHHHHH---HHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc-------CChHHHhHHH---HhcCCHHHHHHH
Confidence 4666666655553 2222223 334556667777777776666543 2333333333 466777777655
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 514 IEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 514 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
..+ .+++..|..+|.....+|+++-|.++|+++- -+-.+.-+|.- .|+.++-.++.+.+.....
T Consensus 341 a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~---~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 341 AKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSS---TGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp CCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHH---CT-HHHHHHHHHHHHHTT-
T ss_pred HHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHH---hCCHHHHHHHHHHHHHccC
Confidence 332 2357788888888888888888888887752 13444555556 7777776666666655443
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 594 LNPEIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 594 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
.+.. -.++.-.|+.++...++.
T Consensus 405 ~n~a-----f~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 INIA-----FQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHH-----HHHHHHHT-HHHHHHHHH
T ss_pred HHHH-----HHHHHHcCCHHHHHHHHH
Confidence 2211 122233455555555443
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.91 E-value=6 Score=34.59 Aligned_cols=69 Identities=13% Similarity=-0.051 Sum_probs=37.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 402 THGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE 470 (701)
Q Consensus 402 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~ 470 (701)
..++.+++..++..+--..|+.+.+-..-+.++...|++.+|+.+|+......+..+-..-.++.++..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 355555666655555555666665555556666666666666666666555554444333333444333
No 332
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.88 E-value=0.97 Score=37.16 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 544 AKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 544 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
+.+.|.++....|.++...+.+|.-+.. ...|.++..--++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s---~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGS---VKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhc
Confidence 4566666677777776666666665444 4445566655555554
No 333
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.64 E-value=12 Score=37.53 Aligned_cols=166 Identities=11% Similarity=-0.057 Sum_probs=83.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cC
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKT----HGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL----AG 438 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g 438 (701)
...+++..+...+..+-... +......++.++.. ..+...|...|..+. ...++...+.++.++.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 45667777777777665521 22344444444443 224555666666332 33445555556666554 22
Q ss_pred ChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 040951 439 DVPAARDILQEAYATIPNS-EEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEG 517 (701)
Q Consensus 439 ~~~~A~~~l~~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~a 517 (701)
|..+|..+|+++....-.. ....+.++..+..-. ... ...-+...|...|.++
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~-------------------------~~~~~~~~A~~~~~~a 181 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QAL-------------------------AVAYDDKKALYLYRKA 181 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhh-------------------------cccHHHHhHHHHHHHH
Confidence 5556666666655543221 111233333332211 000 0000123556666655
Q ss_pred HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951 518 LKRFPSFFNLWLMLGQLEER----LGHLKEAKEAYQSGCNQCPNCIPLWYSLA 566 (701)
Q Consensus 518 l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la 566 (701)
-... ++.....+|.+|.. ..++.+|...|.++..... ...++.++
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 5544 45666667766643 3467777777777766555 55666666
No 334
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.61 E-value=11 Score=37.39 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=62.7
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHhhc--CHHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhC
Q 040951 226 DHDKANKSRVLRMALDEIPDSVRLWKALVEIS--SEEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKL 303 (701)
Q Consensus 226 e~~~~~a~~~l~kal~~~P~~~~l~~~~~~l~--~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~ 303 (701)
|.++.+.++.-..||+.+|.....+..+++-+ ...+|.++|+++++.......--......+...+| ....
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da-------~~rR 269 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA-------QLRR 269 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh-------hhhc
Confidence 34555666677778888887777766666555 67778888888776544332211111111211111 1122
Q ss_pred CCCHHHHH--HHHHHHHHcCChhHHHHHHHHHHHHhh
Q 040951 304 PKERAIWI--AAAKLEEANGNTSMVGKIIERGIRALQ 338 (701)
Q Consensus 304 p~~~~~~~--~~a~~~~~~g~~~~a~~~~~~a~~~~~ 338 (701)
..+..+++ .++.+..+.|+..+|.++|+...+..|
T Consensus 270 Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 270 DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 23444443 467788888888888888888777544
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.49 E-value=0.23 Score=29.96 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
+..+|.++...++++.|...|+++++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3334444444444444444444444333
No 336
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=2.5 Score=45.21 Aligned_cols=125 Identities=18% Similarity=0.024 Sum_probs=67.0
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHH--HHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 543 EAKEAYQSGCNQCPNCIPLWYSL--ANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 543 ~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
-+...+...+..+|.++.+.... +..+.. .++...+.-.+..++..+|.+......++......|....+...+.
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAP---LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccc---cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35555555555666666654433 444444 5666666666666777777776666666665555555444444333
Q ss_pred H-HHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc
Q 040951 621 K-ALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 621 ~-al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 694 (701)
. +....|++....... +. ++.+|..+...|+..++....++++.+.|.++
T Consensus 126 ~~a~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 126 EIAEWLSPDNAEFLGHL-----------------------IR-FYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHhcCcchHHHHhhH-----------------------HH-HHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 3 555555543222111 11 11145555556666666666666666665554
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.38 E-value=7.9 Score=34.70 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=65.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCcHH
Q 040951 402 THGSRESLIALLRKAVTYFPQAE--VLWLMGAKEKWLAGDVPAARDILQEAYATIPNS----EEIWLAAFKLEFENRELE 475 (701)
Q Consensus 402 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~----~~~~~~la~~~~~~~~~~ 475 (701)
+.|..++|...|...-+..-.+. -+.+..+.+....|+...|+..|..+-...|-- .-+.+..+.++..+|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34555666666665554433322 223445555566666666666666665544321 123344555566666666
Q ss_pred HHHHHHHHHHhc-CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 476 RARMLLAKARDM-GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQL 534 (701)
Q Consensus 476 ~A~~~~~~a~~~-~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 534 (701)
......+..-.. +|- ....-.++..-++.|++.+|.+.|..... +...|......+++
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 555544433221 111 33334444455556666666666655544 33334444444443
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.34 E-value=7 Score=34.16 Aligned_cols=71 Identities=13% Similarity=-0.052 Sum_probs=47.3
Q ss_pred HHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 501 ERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 501 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
-...++.+.+..++...--+.|+.+.+-+.-|.++...|++.+|..+++......+..+..--.++.++..
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 33466777777777776677777777777777777777777777777777666555555555555555554
No 339
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.19 E-value=6.7 Score=38.97 Aligned_cols=180 Identities=16% Similarity=0.135 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040951 373 ETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQ-AEVLWLMGAKEKWLAGDVPAARDILQEAY 451 (701)
Q Consensus 373 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~a~ 451 (701)
++|+.+-.-.+...|..+++.-.++-+..+..... -..+++ ........-.-.|..+-++++...+.+++
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~ 283 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHH
Confidence 67888878888888988887776666555432211 011111 11111111122344555778888888887
Q ss_pred HhC-CCCHHHHHHHHHHHHH-----cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh--CCC
Q 040951 452 ATI-PNSEEIWLAAFKLEFE-----NRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKR--FPS 523 (701)
Q Consensus 452 ~~~-p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~ 523 (701)
... |.-..+--.++.++.. .-++..-..+|+-.....|++-+-++.+.......-...++...+-.... -..
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~g 363 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDG 363 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhccccccc
Confidence 765 3322222223333222 23566666777777777777555555555544444555566655554443 233
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH
Q 040951 524 FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL 561 (701)
Q Consensus 524 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 561 (701)
...++-..|.++.+.|..++|...|++++..-++..+-
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 34556666777777777777777777777766665443
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.11 E-value=6.3 Score=42.06 Aligned_cols=98 Identities=17% Similarity=0.065 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
.+.|+.+.|.++.+ ..+++..|..+|......|+++-|...|+++-. +-.+.-+|...|+.+.-.++
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHH
Confidence 66777777766532 234666777777777777777777777766521 23334445556766665555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLA 482 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 482 (701)
...+....-. ......+...|+.++..+++.
T Consensus 396 ~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 396 AKIAEERGDI-----NIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHH
Confidence 5555443221 112222333455555555544
No 341
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.10 E-value=0.96 Score=31.85 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=9.4
Q ss_pred HHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 500 VERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 500 ~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
.+...|++.+|+.+.+.+++..|++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 3334444444444444444444443
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=12 Score=36.24 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=114.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFL--------TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL 436 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 436 (701)
.....+++++|+..|.+.+.... ........++.++...|++.......... ..+|...+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft----- 79 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT----- 79 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc-----
Confidence 34788999999999999997732 12346677888888888877655544332 22222221
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHH
Q 040951 437 AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGNNAE 509 (701)
Q Consensus 437 ~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~~~~ 509 (701)
..+...+++..++..|..++.. +.-+.++...++-... ...-..++.++...|.|..
T Consensus 80 ---k~k~~KiirtLiekf~~~~dsl-------------~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysd 143 (421)
T COG5159 80 ---KPKITKIIRTLIEKFPYSSDSL-------------EDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSD 143 (421)
T ss_pred ---chhHHHHHHHHHHhcCCCCccH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 2233455555566555433222 1112222222211100 1233455677788899999
Q ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hCCCCHHH--HHHHHHHHhhhccCC
Q 040951 510 ERGFIEEGLKRF------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN-----QCPNCIPL--WYSLANLEEKRNGLN 576 (701)
Q Consensus 510 A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~--~~~la~~~~~~~~~g 576 (701)
|+......+... |+-..++..-..+|....+..++...+..+-. .||....+ -..-|.+... ..
T Consensus 144 alalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcd---d~ 220 (421)
T COG5159 144 ALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCD---DR 220 (421)
T ss_pred HHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeec---cc
Confidence 988877665432 33456677777788888888887777766533 24443222 2222333344 67
Q ss_pred CHHHHHHHHHHHHHhC
Q 040951 577 GLSKARAVLSVARLKN 592 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~ 592 (701)
++..|.++|-.+++-.
T Consensus 221 dyktA~SYF~Ea~Egf 236 (421)
T COG5159 221 DYKTASSYFIEALEGF 236 (421)
T ss_pred cchhHHHHHHHHHhcc
Confidence 8888998888888755
No 343
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.03 E-value=1.4 Score=41.82 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 040951 525 FNLWLMLGQLEERLGHLKEAKEAYQSGCNQ 554 (701)
Q Consensus 525 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 554 (701)
..+.+.+|.+..+.|++++|...|.+++..
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 345666666666777777777776666653
No 344
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.00 E-value=0.22 Score=46.29 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=32.4
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC 558 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 558 (701)
..++.+.|.++|.+++...|....-|+.+|...++.|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34555555555555555555555555555555555555555555555555555554
No 345
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=3.1 Score=44.45 Aligned_cols=96 Identities=16% Similarity=-0.052 Sum_probs=43.0
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhhCCCCHHHHHHH------HHHHhhhcc
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQS-GCNQCPNCIPLWYSL------ANLEEKRNG 574 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~~~~ 574 (701)
...++...+.-.+..++..+|.+...+..++......|....+...+.. +....|++......+ +++...
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--- 154 (620)
T COG3914 78 APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL--- 154 (620)
T ss_pred cccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH---
Confidence 3344444444445555555555555555555444433333333332222 444445444444433 333333
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
.|+..++...++++....|+++.+..
T Consensus 155 l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 155 LGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred hccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 44555555555555555554444333
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.91 E-value=0.36 Score=31.76 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 661 HVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 661 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
.++..+|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999999986
No 347
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=9.6 Score=39.16 Aligned_cols=137 Identities=16% Similarity=0.131 Sum_probs=95.0
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhc-cCCCHHHHH
Q 040951 506 NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH--LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRN-GLNGLSKAR 582 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~g~~~~A~ 582 (701)
-.+.-+.+...+++.+|++..+|.....++.+.+. +..=..+.+++++.+|.+...|-..-.+..... ......+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 34666777888899999998999988888876653 577788888899999988777655444443200 012355667
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh------cCC------HHHHHHHHHHHHHhCCCCHHHHHHHHhcCCC
Q 040951 583 AVLSVARLKNPLNPEIWLATIRAESK------HGN------KKEADSFIAKALQKCPNSGILWAELIKMVPH 642 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~l~~~~~~------~g~------~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~ 642 (701)
.+..+++..++.|..+|.....+... .|+ ...-......|+-.+|++...|..+.++..+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 77888888888888888887766652 232 1233445566667788888888887766554
No 348
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.57 E-value=0.62 Score=29.75 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNW--FNKAVSLDPDT 693 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~ 693 (701)
++.+..+|..+...|++++|+.. |.-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 45688899999999999999999 55888888764
No 349
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.29 E-value=11 Score=33.93 Aligned_cols=133 Identities=12% Similarity=0.058 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c--HHHHHHHHHHHHHcCChH
Q 040951 368 KRGSIETARAIFSHACTVFLTK--KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQ--A--EVLWLMGAKEKWLAGDVP 441 (701)
Q Consensus 368 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~~a~~~~~~g~~~ 441 (701)
+.+..++|...|..+-+..-.+ .-+.+..+.+..+.|+...|...|..+-...|- - ..+.+.-+.++...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 4455566666666555443322 224455566666667777777777666544321 1 223444455555666666
Q ss_pred HHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 040951 442 AARDILQEAY-ATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIV 500 (701)
Q Consensus 442 ~A~~~l~~a~-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~ 500 (701)
....-.+..- ..+|--..+.-.++...++.|++..|.+.|..+..-...|+.....+++
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ 209 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHH
Confidence 6555444322 1223334455566666667777777777777666533334444444433
No 350
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=12 Score=38.36 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=110.3
Q ss_pred HhCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 040951 503 ELGNN-AEERGFIEEGLKRFPSFFNLWLMLGQLEE------------RLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLE 569 (701)
Q Consensus 503 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 569 (701)
..|.+ ..++++-.+.+..+|+...+|...-.++. .+.-.+.-+.+...+++.+|++..+|.....++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 33443 34555556667777776666554433322 122455667778888899999999999999998
Q ss_pred hhhccCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC--
Q 040951 570 EKRNGLN--GLSKARAVLSVARLKNPLNPEIWLATIRAESK----HGNKKEADSFIAKALQKCPNSGILWAELIKMVP-- 641 (701)
Q Consensus 570 ~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~-- 641 (701)
.+ .+ ++..-+.+.+++++.+|.|...|...=.+... .....+=..+..+++..++.+-..|.....+..
T Consensus 120 ~~---~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 120 QK---NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred Hh---CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 86 44 57888899999999999988877664433322 223455677888888889988888877543322
Q ss_pred --C--cc----------chhHHHHHHHhcCCChHHHHHHHHHHHh
Q 040951 642 --H--HD----------RKSKGKDALVKSDRDPHVFAAVAKLFWH 672 (701)
Q Consensus 642 --~--~~----------~~~~~~~al~~~p~~~~~~~~lg~~~~~ 672 (701)
+ .+ .......|+-.+|+|+.+|+..-|++-+
T Consensus 197 ~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 197 HPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred ccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 1 22 1224456777888888888775555443
No 351
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=19 Score=36.07 Aligned_cols=258 Identities=14% Similarity=0.037 Sum_probs=152.6
Q ss_pred HhcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC--cHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTV--FLTK--------KSIWLKAAQLEKTHGSRESLIALLRKAVTY---FPQ--AEVLWLMGA 431 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~--~~~~~~~~a 431 (701)
...+++++++.+|.+.+.. .|.+ ....+.++.++.+.|+.++...+.+..-.. .+. ...+...+.
T Consensus 15 ~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lv 94 (411)
T KOG1463|consen 15 VSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLV 94 (411)
T ss_pred cccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5566678899999998874 2222 236778999999999988877766554322 221 222223333
Q ss_pred HHHHH-cCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCcHHHHHHHHHHHHhcC---CC----HHHHHHH
Q 040951 432 KEKWL-AGDVPAARDILQEAYATIPNSEE------IWLAAFKLEFENRELERARMLLAKARDMG---GT----ERVWMKS 497 (701)
Q Consensus 432 ~~~~~-~g~~~~A~~~l~~a~~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~---p~----~~~~~~~ 497 (701)
..... .+..+.-+.++..+++....... +-..++.+|...++|.+|+.+....+... .+ ..++..-
T Consensus 95 d~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llE 174 (411)
T KOG1463|consen 95 DMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLE 174 (411)
T ss_pred HHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhh
Confidence 33222 33344555555555554322111 22357888999999999999888777532 11 4556666
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC---CHHHHH---H
Q 040951 498 AIVERELGNNAEERGFIEEGLKRF-----PSF--FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN---CIPLWY---S 564 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~---~ 564 (701)
...|+...+..+|...+..|-... |.- ..+-+.-|-++....+|..|..+|-++++-+.. ++.+.. .
T Consensus 175 SK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKY 254 (411)
T KOG1463|consen 175 SKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKY 254 (411)
T ss_pred hHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 777888889999888887665432 211 123334455555668999999999988875432 223321 1
Q ss_pred HHHHHhhhccCCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCC
Q 040951 565 LANLEEKRNGLNGLSKARAVL--SVARLKNPLNPEIWLATIRAESK--HGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 565 la~~~~~~~~~g~~~~A~~~~--~~a~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p 627 (701)
+..+-.. .+..++--.++ ..+++......++....+..+.. ..+|+.|..-|..-+..+|
T Consensus 255 MlLcKIM---ln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 255 MLLCKIM---LNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHH---hcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 2222223 45555544444 34455445555677777766543 3467777777776666655
No 352
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.87 E-value=0.42 Score=44.44 Aligned_cols=57 Identities=14% Similarity=0.284 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA 423 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 423 (701)
...++.+.|.++|.+++..-|.....|+.++....+.|+++.|...|++.++.+|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456666677777777777777777777777777777777777777777777766654
No 353
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=90.72 E-value=0.38 Score=29.44 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 289 YGVARSVLNKARKKLPKERAIWIAAAKLE 317 (701)
Q Consensus 289 ~~~A~~~l~~a~~~~p~~~~~~~~~a~~~ 317 (701)
++.|+.+|++.+...|. +..|+.+|.++
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAkFE 30 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAKFE 30 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHHhh
Confidence 34455555555555443 45555555443
No 354
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.61 E-value=9 Score=31.93 Aligned_cols=89 Identities=17% Similarity=0.030 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------hCCCCHHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNPLN------------PEIWLATIRAESKHGNKKEADSFIAKALQ-------KCPNSGILWAE 635 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~l~~~ 635 (701)
.|-+++|-.-+.++......- .-.+..++..+...|+|++++..-.++|. ++.+.+.+|.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI- 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI- 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH-
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH-
Confidence 466667766666666543211 12455566677778888777766666654 4556667774
Q ss_pred HHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 636 LIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 636 ~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
.+.+..|..+...|..++|...|+.+.+.
T Consensus 101 -------------------------aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 -------------------------AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 45566788889999999999999998764
No 355
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.30 E-value=36 Score=38.42 Aligned_cols=180 Identities=9% Similarity=-0.116 Sum_probs=89.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHH
Q 040951 436 LAGDVPAARDILQEAYATIPNSEE----IWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEER 511 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~ 511 (701)
...+.+.|...+.+.....+-+.. ++..++.-....+...+|...+..+.....+..++-....+....++++.+.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHH
Confidence 344556666666554333322211 2222332222222234444444443332222233333333333455555544
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC----------------------------HHHHH
Q 040951 512 GFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC----------------------------IPLWY 563 (701)
Q Consensus 512 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------~~~~~ 563 (701)
..+..+-..........+-+|..+...|+.++|...|+++... .+. ....+
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 411 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEM 411 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHH
Confidence 4444432222233445555555555566666666665554321 000 00123
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
..+..+.. .|....|...+..++.. .++.-...++.+....|.++.++....+
T Consensus 412 ~ra~~L~~---~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 412 ARVRELMY---WNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHH---CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 44455556 78888999888887765 3455667778888888888877765544
No 356
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.79 E-value=3.3 Score=35.38 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 558 CIPLWYSLANLEEKRNGLNGLSKARAVLSVARL-KNPLNP-EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGIL 632 (701)
Q Consensus 558 ~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l 632 (701)
+....+.+++.+..+.+..+..+.+.+++..++ ..|... +..+.++--+.+.|+|+.++.+....++..|++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 445567777777653234567788888888886 444332 556667777888899999999999999999887543
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.77 E-value=0.47 Score=27.68 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
|.+...+|.+++..|++++|+.++++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 45678899999999999999998863
No 358
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.75 E-value=84 Score=41.80 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC----C-ccchhHHHHH----HHhcC--CChHHHH
Q 040951 596 PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP----H-HDRKSKGKDA----LVKSD--RDPHVFA 664 (701)
Q Consensus 596 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~----~-~~~~~~~~~a----l~~~p--~~~~~~~ 664 (701)
.+.+...|.+..+.|..++|-..|..|++.+-.-+..|..++.... + .+....+..| ++..+ ++....-
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk 2891 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARK 2891 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHH
Confidence 3567777888888888888888888888888888888877654321 1 1111222221 12222 2334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccccC
Q 040951 665 AVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701 (701)
Q Consensus 665 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~~y 701 (701)
.+++++|-. .++.|.....++++..-..-.+|.|+|
T Consensus 2892 ~iakvLwLl-s~dda~~~l~~~~~k~l~~ip~~~wl~ 2927 (3550)
T KOG0889|consen 2892 LIAKVLWLL-SFDDSLGTLGDVFDKFLGEIPVWNWLY 2927 (3550)
T ss_pred HHHHHHHHH-HhccccchHHHHHHHhhccCCchhhhh
Confidence 555555533 334444455555555555556666654
No 359
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=7.3 Score=39.75 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HH
Q 040951 560 PLWYSLANLEEKRNGLNGLSKARAVLSVARLKN-----P-LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS--GI 631 (701)
Q Consensus 560 ~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 631 (701)
.+|+.+...++. .|+...-+..+...+... . ....+...+.+.|...+.+++|..+..+.. .|.. ..
T Consensus 170 k~~fy~~l~~E~---~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snn 244 (493)
T KOG2581|consen 170 KLYFYLYLSYEL---EGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNN 244 (493)
T ss_pred HHHHHHHHHHHh---hcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccH
Confidence 345666666666 666555555554443321 1 112345556677777788888877776653 3322 12
Q ss_pred HHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 632 LWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 632 l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
.| +..++.+|.+..-+++|..|.++|-+|+...|++
T Consensus 245 e~--------------------------ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 245 EW--------------------------ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HH--------------------------HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 22 4456668888888888888888888888888864
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.56 E-value=5.9 Score=36.67 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcC
Q 040951 579 SKARAVLSVARLKN-PLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSD 657 (701)
Q Consensus 579 ~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p 657 (701)
+.|+..|-++-... -+++++.+.+|.+|. .-+.++++.++-++++..+.+. .
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~--------------------------~ 175 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD--------------------------N 175 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC--------------------------C
Confidence 34555544432211 145666666666665 3456667777777776655321 1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHH
Q 040951 658 RDPHVFAAVAKLFWHDRKVDKARN 681 (701)
Q Consensus 658 ~~~~~~~~lg~~~~~~g~~~~A~~ 681 (701)
-||+++..++.++.+.|+++.|--
T Consensus 176 ~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhhhh
Confidence 146777777777777777776643
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.39 E-value=43 Score=37.89 Aligned_cols=295 Identities=10% Similarity=0.023 Sum_probs=136.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH---HHcCChH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHG--SRESLIALLRKAVTYFPQAEVLWLMGAKEK---WLAGDVP 441 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~---~~~g~~~ 441 (701)
...|++..+..+...+ .-+|- ..+..+..+....+ .++ -+...+..+|+.+.........+ ...++..
T Consensus 44 ~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 44 WDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 6777777766554432 33442 33444444433333 233 34444556676665444333333 2344554
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHH------------------HHHHH
Q 040951 442 AARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKS------------------AIVER 502 (701)
Q Consensus 442 ~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~------------------a~~~~ 502 (701)
..+.++ ...|.+......++......|+.++|.....++-..... +.....+ .....
T Consensus 117 ~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al 192 (644)
T PRK11619 117 GLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAM 192 (644)
T ss_pred HHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444322 234777777777777788888877776666666543321 2211111 22233
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhccCCCH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNL-WLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNGLNGL 578 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~g~~ 578 (701)
..|+...|..+.... |.+... ...+..+ ..+...+...+.. ..|.. ..+.+.+.++ . ..+.
T Consensus 193 ~~~~~~lA~~l~~~l----~~~~~~~a~a~~al---~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rl--a---r~d~ 257 (644)
T PRK11619 193 KAGNTGLVTYLAKQL----PADYQTIASALIKL---QNDPNTVETFART---TGPTDFTRQMAAVAFASV--A---RQDA 257 (644)
T ss_pred HCCCHHHHHHHHHhc----ChhHHHHHHHHHHH---HHCHHHHHHHhhc---cCCChhhHHHHHHHHHHH--H---HhCH
Confidence 444444443333322 111111 1111111 1222222222111 01111 1122233332 3 3456
Q ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHH
Q 040951 579 SKARAVLSVARLKNPLNP----EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALV 654 (701)
Q Consensus 579 ~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~ 654 (701)
+.|...+.+.....+-+. .++..++.-....+...+|...+..+.... .+..++...+.+..+.++...+...+.
T Consensus 258 ~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~ 336 (644)
T PRK11619 258 ENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLA 336 (644)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 777777776544443322 233333333333322445555555433222 122222222222222222233333333
Q ss_pred hcC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 655 KSD----RDPHVFAAVAKLFWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 655 ~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 688 (701)
.-| +.+...+-+|+.+...|+.++|..+|+++..
T Consensus 337 ~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 337 RLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred hcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333 3567888899998889999999999999854
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.28 E-value=3.9 Score=37.78 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q 040951 473 ELERARMLLAKARDMG--GTERVWMKSAIVERELGNNAEERGFIEEGLKRFPS----FFNLWLMLGQLEERLGHLKEA 544 (701)
Q Consensus 473 ~~~~A~~~~~~a~~~~--p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A 544 (701)
.-+.|+..|-++-... .++.+.+.+|.+|. ..|.++++.++.++++..+. +++++..++.++...|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3445555555443322 12566666666554 45666777777777666533 366677777777777766665
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.99 E-value=10 Score=32.45 Aligned_cols=70 Identities=9% Similarity=0.041 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcC---cHHHHHHHHHHHHh-cCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHH
Q 040951 459 EIWLAAFKLEFENR---ELERARMLLAKARD-MGGT--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLW 528 (701)
Q Consensus 459 ~~~~~la~~~~~~~---~~~~A~~~~~~a~~-~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 528 (701)
+..+.++..+.... +..+.+.+++..++ .+|. ....+.++.-+.+.++|+.++.+++..++..|++..+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 33444444444432 33445555555554 3343 33344444445566666666666666666666654443
No 364
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.24 E-value=4.7 Score=39.66 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYA 452 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~ 452 (701)
.++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555554433
No 365
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.86 E-value=4.9 Score=39.03 Aligned_cols=67 Identities=16% Similarity=-0.084 Sum_probs=51.2
Q ss_pred HHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951 500 VERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA 566 (701)
Q Consensus 500 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 566 (701)
.+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|++.++..+..+|+.+.+-..-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3556677888888888888888888877888888888888888888888888888888766544333
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.79 E-value=30 Score=34.10 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-H
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQL-E 535 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~ 535 (701)
++.++..+|..+.+.|++..|+..|-..- ++..... ..-++.-..+-.|....++...+.+ |
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~-------------~~ll~~~~~~~~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAY-------------VMLLEEWSTKGYPSEADLFIARAVLQY 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHH-------------HHHHHHHHHHTSS--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHH-------------HHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 56777788888888888777776653211 0111000 0001111223345555666665554 6
Q ss_pred HHcCCHHHHHHHHHHHhhh
Q 040951 536 ERLGHLKEAKEAYQSGCNQ 554 (701)
Q Consensus 536 ~~~~~~~~A~~~~~~al~~ 554 (701)
...++...|...+...++.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 6778888888877666655
No 367
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.75 E-value=3.2 Score=40.80 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 425 VLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 425 ~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
.++..++..+...|+++.+...+++.+..+|.+..+|..+...|...|+...|+..|+++-.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34566667777777777777777777777777777777777777777777777777777665
No 368
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.26 E-value=1e+02 Score=41.13 Aligned_cols=42 Identities=24% Similarity=0.357 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccccC
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALYY 701 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~~y 701 (701)
++.+..-|.++.+.|+.++|-..|..|++++-.-+.+|..|+
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg 2853 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWG 2853 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHH
Confidence 677888899999999999999999999999999999998774
No 369
>PRK12798 chemotaxis protein; Reviewed
Probab=85.33 E-value=51 Score=34.36 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHH-HHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHH
Q 040951 425 VLWLMGAKEKWLAGDVPAARDILQEAYAT-IPNSEEIWLAAFKL-EFENRELERARMLLAKARDMGGT----ERVWMKSA 498 (701)
Q Consensus 425 ~~~~~~a~~~~~~g~~~~A~~~l~~a~~~-~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a 498 (701)
+.-+..+-..+..|+..++.+.+...-.. .|.....++.++.. .....+..+|+.+|+.+.-..|. .-......
T Consensus 113 d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi 192 (421)
T PRK12798 113 DQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSL 192 (421)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhh
Confidence 33344444444566666666666543222 13333333333322 22345566666666666666665 22333333
Q ss_pred HHHHHhCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhh-CCCC-HHHHHHHHHHHhhhc
Q 040951 499 IVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGHLKEAKEAYQSGCNQ-CPNC-IPLWYSLANLEEKRN 573 (701)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~-~~~~~~la~~~~~~~ 573 (701)
.+....|+.+++..+-.+.+..+..++ .++-.++....+.++-..- ..+...+.. +|.. ..+|+.+++--.-
T Consensus 193 ~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali-- 269 (421)
T PRK12798 193 FIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALI-- 269 (421)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHH--
Confidence 444566666666666666666655543 2333333333333322211 223333332 3332 4456666666666
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 040951 574 GLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 574 ~~g~~~~A~~~~~~a~~~~ 592 (701)
.|+.+-|.-.-++++...
T Consensus 270 -~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 270 -DGKTELARFASERALKLA 287 (421)
T ss_pred -cCcHHHHHHHHHHHHHhc
Confidence 666666666666666654
No 370
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.87 E-value=6.9 Score=46.10 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=11.8
Q ss_pred CccccChhhhHHhhhh
Q 040951 119 GLTVVDLSGYLTRMND 134 (701)
Q Consensus 119 ~~~~~~p~~~l~~~~~ 134 (701)
|....|..-||.+|-.
T Consensus 532 gi~g~DgR~yllDL~~ 547 (1236)
T KOG1839|consen 532 GISGVDGRHYLLDLMH 547 (1236)
T ss_pred cccCCCcchhHHHHHh
Confidence 5566788889988753
No 371
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.72 E-value=19 Score=37.03 Aligned_cols=122 Identities=17% Similarity=0.079 Sum_probs=78.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhC--------C-----CCHH-----HHHHHHHHHHHc
Q 040951 342 VVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVF--------L-----TKKS-----IWLKAAQLEKTH 403 (701)
Q Consensus 342 ~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p-----~~~~-----~~~~la~~~~~~ 403 (701)
..+..+.|+..|.. +|..+.++++|..|..-|..+|+.. | ++.. +-..+..+|...
T Consensus 168 ~~PqiDkwl~vAL~------das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~ 241 (569)
T PF15015_consen 168 FLPQIDKWLQVALK------DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRM 241 (569)
T ss_pred cChhHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhc
Confidence 34456667765543 3555677788877777777777653 1 1111 334677888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH---HHHHHhCCCCHHHHHHHHHHHH
Q 040951 404 GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDIL---QEAYATIPNSEEIWLAAFKLEF 469 (701)
Q Consensus 404 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l---~~a~~~~p~~~~~~~~la~~~~ 469 (701)
++.+-|+....+.+..+|....-++..|-++.....+.+|-.-+ .-++-.+..+..-...+.++|+
T Consensus 242 rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 242 RKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred CCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 99999999888888889988888888888877777777665433 2233333333333334445444
No 372
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=84.38 E-value=3.5 Score=43.36 Aligned_cols=85 Identities=18% Similarity=-0.007 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHH
Q 040951 406 RESLIALLRKAVTYFPQAEVLWLMGAKEKWL---AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLA 482 (701)
Q Consensus 406 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 482 (701)
...++..|.+++...|....++...+.++.+ .|+.-.|+.-...++..+|....+|+.++.++.+.+.+.+|+....
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~ 469 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHW 469 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 3455666666666666666666666555544 3344555555566666666666666666666666666666666666
Q ss_pred HHHhcCCC
Q 040951 483 KARDMGGT 490 (701)
Q Consensus 483 ~a~~~~p~ 490 (701)
.+...+|+
T Consensus 470 alq~~~Pt 477 (758)
T KOG1310|consen 470 ALQMSFPT 477 (758)
T ss_pred HHhhcCch
Confidence 66656664
No 373
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.29 E-value=8.2 Score=37.35 Aligned_cols=127 Identities=10% Similarity=0.109 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHH
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQLEER--------LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSK 580 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~ 580 (701)
.|++.-...+..+|....+|...-.+... ..-.+.-...+..+++.+|.+...|...-.++..+ ...++..
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~-p~~~~~r 128 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELF-PKPSWGR 128 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhC-CCcccch
Confidence 45555555566666665666555544332 12234445567777777888877777766666540 0245667
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH---HhcCCH---HHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 581 ARAVLSVARLKNPLNPEIWLATIRAE---SKHGNK---KEADSFIAKALQKCPNSGILWAEL 636 (701)
Q Consensus 581 A~~~~~~a~~~~p~~~~~~~~l~~~~---~~~g~~---~~A~~~~~~al~~~p~~~~l~~~~ 636 (701)
-..+.++.+..+|.|...|...-.+. .+.+++ ..-.++-..++..++.+...|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 77777788888888877665544333 122333 333444445666677777777653
No 374
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.22 E-value=2.5 Score=27.37 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 661 HVFAAVAKLFWHDRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 661 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 690 (701)
+++..+|.+-...++|+.|..-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999863
No 375
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=13 Score=40.42 Aligned_cols=88 Identities=9% Similarity=-0.148 Sum_probs=57.3
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 467 LEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLG 539 (701)
Q Consensus 467 ~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 539 (701)
-..+..+|..+.+.|...+...|+ ......+..+|....+.++|.+++++|-+.+|.++-.-.....+....|
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 344556677777777777765554 3344455566666677777777777777777776666666666666667
Q ss_pred CHHHHHHHHHHHhhh
Q 040951 540 HLKEAKEAYQSGCNQ 554 (701)
Q Consensus 540 ~~~~A~~~~~~al~~ 554 (701)
.-++|..+.......
T Consensus 443 ~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 443 KSEEALTCLQKIKSS 457 (872)
T ss_pred chHHHHHHHHHHHhh
Confidence 777777776665543
No 376
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.49 E-value=3.1 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
.+..+|.+|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445566666666666666666666554
No 377
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.90 E-value=5 Score=42.32 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHH
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERL---GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAV 584 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~ 584 (701)
..|+..|.++++..|....++...+.++.+. |+.-.|+.-...++..+|....+|+.+++++.. .+.+.+|+..
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e---l~r~~eal~~ 467 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE---LTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH---HhhHHHhhhh
Confidence 3445555555555555555555555444432 333344444444555555555555555555555 5555555555
Q ss_pred HHHHHHhCC
Q 040951 585 LSVARLKNP 593 (701)
Q Consensus 585 ~~~a~~~~p 593 (701)
...+...+|
T Consensus 468 ~~alq~~~P 476 (758)
T KOG1310|consen 468 HWALQMSFP 476 (758)
T ss_pred HHHHhhcCc
Confidence 555555555
No 378
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.48 E-value=89 Score=34.33 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=75.2
Q ss_pred HHHHHH---hhcCHHHHHHHHHHHHHHCCCCH----------HHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 249 LWKALV---EISSEEEARILLHRAVECCPLDV----------ELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAK 315 (701)
Q Consensus 249 l~~~~~---~l~~~~~A~~~l~~a~~~~P~~~----------~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~ 315 (701)
||.... +.++|..+.+.|...+...|.+. .+..+|.++++.++|.++++.|-+.+|.++-.-.....
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 777655 34599999999999999999874 24456778899999999999999999999888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHHhhc
Q 040951 316 LEEANGNTSMVGKIIERGIRALQG 339 (701)
Q Consensus 316 ~~~~~g~~~~a~~~~~~a~~~~~~ 339 (701)
.....|+..+|..++........+
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhhcc
Confidence 888889999999888877665433
No 379
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.47 E-value=2.2 Score=24.80 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=9.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 040951 528 WLMLGQLEERLGHLKEAKEAY 548 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~ 548 (701)
.+.+|.++...|++++|+..+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444444444443
No 380
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.94 E-value=12 Score=36.35 Aligned_cols=62 Identities=15% Similarity=-0.117 Sum_probs=37.5
Q ss_pred HHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 534 LEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 534 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
.+...++++.|..+.++.+..+|.++.-+.-.|.+|.+ .|.+.-|+..++..+...|+.+..
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q---l~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ---LGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh---cCCchhhHHHHHHHHHhCCCchHH
Confidence 34555666666666666666666666666666666666 666666666666666666655543
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.84 E-value=4.9 Score=32.39 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=49.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 607 SKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKA 686 (701)
Q Consensus 607 ~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 686 (701)
.+.|++..|.+.+.+.+.....+...-. ...-...+..+|.++...|++++|...++.|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~---------------------~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSS---------------------NSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchh---------------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4678999998888888876553211000 0001456788999999999999999999999
Q ss_pred HHhCCCCcc
Q 040951 687 VSLDPDTGD 695 (701)
Q Consensus 687 l~~~p~~~d 695 (701)
+.+....+|
T Consensus 68 i~~Are~~D 76 (94)
T PF12862_consen 68 IRLARENGD 76 (94)
T ss_pred HHHHHHHCC
Confidence 998665554
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.49 E-value=12 Score=30.18 Aligned_cols=51 Identities=24% Similarity=0.155 Sum_probs=23.8
Q ss_pred HcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 436 LAGDVPAARDILQEAYATIPNS---------EEIWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
..||+..|++.+.+.+...... ..+.+.++.+....|++++|...+++++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555555555555544432211 12233444455555555555555555554
No 383
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=80.01 E-value=16 Score=43.31 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=71.6
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----
Q 040951 420 FPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT-------I-PNSEEIWLAAFKLEFENRELERARMLLAKARDM---- 487 (701)
Q Consensus 420 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~-------~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 487 (701)
+|.....+..++.++...|+.++|+..-.++.-. + |+....+..++..+...++...|...+.++...
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 4555555555555555555555555544433221 1 222333444555555555555555555555541
Q ss_pred ----CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 488 ----GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF-----PS---FFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 488 ----~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
.|. ..+...+..++...++++.|+.+++.|+... |. ....+..+++.....+++..|....+....
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 232 3444555555556666677777776666543 11 234556666667777777766666555544
No 384
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.80 E-value=1.4e+02 Score=35.40 Aligned_cols=93 Identities=11% Similarity=0.086 Sum_probs=51.8
Q ss_pred cChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH----HcCChhHHHHHHHHHHHHhhc-CcccCCHHHHHHHHHHHHH
Q 040951 287 ETYGVARSVLNKARKKLPKER---AIWIAAAKLEE----ANGNTSMVGKIIERGIRALQG-EEVVIDRDTWMKEAEIAEK 358 (701)
Q Consensus 287 ~~~~~A~~~l~~a~~~~p~~~---~~~~~~a~~~~----~~g~~~~a~~~~~~a~~~~~~-~~~~~~~~~w~~~a~~~e~ 358 (701)
..|+.|...|++....+|.-. ++.+..|-... ..|+. ..|.+|+..+.. ++....+..|+.-|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 559 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGKA----- 559 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhHH-----
Confidence 458889999999998888753 33333332222 22322 223333322111 11111233444433
Q ss_pred cCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 359 AGSDAEECKKRGSIETARAIFSHACTVFLTKKSIW 393 (701)
Q Consensus 359 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 393 (701)
-+|.+.|++++-++.|.-+++.+|..+.+-
T Consensus 560 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 -----LVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred -----HHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 345788888888888888888888777543
No 385
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.07 E-value=17 Score=39.17 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040951 259 EEEARILLHRAVECCPLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIR 335 (701)
Q Consensus 259 ~~~A~~~l~~a~~~~P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~ 335 (701)
+-+.+.+.++|++..|+...-.-...++|+++.|..+..+ .++..-|-.++.+....|++..|.++|.++..
T Consensus 623 Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3444566778888888876666667788999988776543 34577899999999999999999999999865
No 386
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.82 E-value=74 Score=31.87 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHH---HHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHH
Q 040951 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPN---SEEIWL---AAFKLEFENRELERARMLLAKARDMGGT----ERV 493 (701)
Q Consensus 424 ~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~---~~~~~~---~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~ 493 (701)
.+++...+..|.+.||.+.|.+.+.+.....-. -.++.+ .+|.+|....-..+-++.....++...+ .+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 467788888888888888888877766654311 122322 3555554444444444444444444554 223
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhCCC
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRFPS 523 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 523 (701)
-...|.......++.+|-.+|-.++..+..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 333455666777888888888888776654
No 387
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=78.65 E-value=89 Score=32.60 Aligned_cols=46 Identities=30% Similarity=0.310 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 506 NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 506 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
..-+|+.+++.++...|.+..+.+.+..+|...|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3557888899999999999999999999999999999999999764
No 388
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.52 E-value=42 Score=28.81 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=72.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------HHHHH---------cCCHHHHHHHHHHHHHhCCC
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAA-----------QLEKT---------HGSRESLIALLRKAVTYFPQ 422 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~~---------~g~~~~A~~~~~~al~~~p~ 422 (701)
|......|..++..++..+.+...|-...-|.--- ..+-. .|+.......+-. .+ .
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~---~n-~ 84 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAK---RN-K 84 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHH---TT--
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHH---hc-c
Confidence 34457789999999999999988776666565211 11111 1222222222211 11 1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG 488 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 488 (701)
.....-.....+...|.-++-..++...++.+..++.+.+.++..|.+.|+..++.+++.+|.+..
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 222222333455678888888888988887665679999999999999999999999999998653
No 389
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=78.15 E-value=43 Score=28.63 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 040951 525 FNLWLMLGQLEERLGHLKEAKEAYQ 549 (701)
Q Consensus 525 ~~~~~~la~~~~~~~~~~~A~~~~~ 549 (701)
+.+|...|..+...|++.+|.++|+
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444555555555555555444
No 390
>PF12854 PPR_1: PPR repeat
Probab=78.11 E-value=5.6 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 659 DPHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 659 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
|...+..+...|.+.|+.++|.++|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 577899999999999999999999986
No 391
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=77.84 E-value=40 Score=28.79 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 658 RDPHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 658 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
..+..+...|.++...|++.+|.++|+.
T Consensus 97 ~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 97 KLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3467778889999999999999999875
No 392
>PRK12798 chemotaxis protein; Reviewed
Probab=77.70 E-value=95 Score=32.43 Aligned_cols=214 Identities=14% Similarity=0.032 Sum_probs=138.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH-HcCChHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLT-KKSIWLKAAQLEKTHGSRESLIALLRKAVTY-FPQAEVLWLMGAKEKW-LAGDVPAA 443 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~-~~g~~~~A 443 (701)
..-|+...... ++..++. +.+.-+.-+-+-+-.|+..++.+.+..+... .|.....++.++.... ...+..+|
T Consensus 92 lSGGnP~vlr~----L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~A 167 (421)
T PRK12798 92 LSGGNPATLRK----LLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATA 167 (421)
T ss_pred hcCCCHHHHHH----HHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHH
Confidence 56677665444 4444432 4445555566666789999999888765432 3444444555554433 46789999
Q ss_pred HHHHHHHHHhCCCC--HH-HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHH
Q 040951 444 RDILQEAYATIPNS--EE-IWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEE 516 (701)
Q Consensus 444 ~~~l~~a~~~~p~~--~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~ 516 (701)
+..|+.+.-..|.. ++ +...-..+....|+.++...+-.+.+..+.. ..++-.++......++-.. ...+..
T Consensus 168 l~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~ 246 (421)
T PRK12798 168 LKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVE 246 (421)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHH
Confidence 99999999999983 22 4445556667899999998888888776654 5555555555555443322 233666
Q ss_pred HHHhC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC----HHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Q 040951 517 GLKRF-PS-FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC----IPLWYSLANLEEKRNGLNGLSKARAVLSVA 588 (701)
Q Consensus 517 al~~~-p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~g~~~~A~~~~~~a 588 (701)
.+... |. -..+|+.+++--.-.|+.+-|.-.-++++.+.... ..+.+..+-...- ..++..|+..+...
T Consensus 247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~---s~~~~~al~~L~~I 321 (421)
T PRK12798 247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVA---SDDAESALEELSQI 321 (421)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccC---cccHHHHHHHHhcC
Confidence 66654 33 36688889999999999999999999998876432 2222222333333 55677777776654
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.01 E-value=53 Score=32.34 Aligned_cols=54 Identities=20% Similarity=-0.012 Sum_probs=33.8
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
+..|...|.+.+|+++.++++..+|-+...+..+.+++...||--.+.+.|++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445556666666666666666666666666666666666666655555555443
No 394
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=76.74 E-value=9.1 Score=24.42 Aligned_cols=20 Identities=20% Similarity=-0.029 Sum_probs=8.3
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 040951 528 WLMLGQLEERLGHLKEAKEA 547 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~ 547 (701)
++.+|-.+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33444444444444444444
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.77 E-value=5.7 Score=26.68 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 664 AAVAKLFWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 664 ~~lg~~~~~~g~~~~A~~~~~~al~ 688 (701)
+.++..|...|+.+.|+++++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999995
No 396
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.57 E-value=54 Score=28.48 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=13.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 438 GDVPAARDILQEAYATIPNSEEIWLAAFKLEF 469 (701)
Q Consensus 438 g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~ 469 (701)
+.......+++.++..++.++.+...++.+|.
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 33444444444444444333334444444443
No 397
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.24 E-value=48 Score=27.81 Aligned_cols=23 Identities=4% Similarity=-0.223 Sum_probs=10.6
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Q 040951 463 AAFKLEFENRELERARMLLAKAR 485 (701)
Q Consensus 463 ~la~~~~~~~~~~~A~~~~~~a~ 485 (701)
.++..+...|+|++++...++++
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHH
Confidence 34444555555555544444443
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.17 E-value=88 Score=30.78 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 040951 388 TKKSIWLKAAQLEKTHGSRE-SLIALLRKAVTYF------PQAEVLWLMGAKEKWLAGDVPAARDILQ 448 (701)
Q Consensus 388 ~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~ 448 (701)
.+......++.+....+.-+ +-.++..++++.. -.++.++..+|..++..|++..|+..|-
T Consensus 47 ~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 47 VDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 33434445555555443222 3444455555432 1578999999999999999988877664
No 399
>PF13041 PPR_2: PPR repeat family
Probab=75.08 E-value=15 Score=25.19 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
.|..+...+.+.|++++|.++|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444455555555555554444
No 400
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=73.92 E-value=2e+02 Score=34.31 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=58.5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
.+.|-|..|..+|..-.+. ...++..+|..+...+.+++|.-.|+++=+. . .....+...|++.+|..+
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----e----kAl~a~~~~~dWr~~l~~ 987 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERCGKL----E----KALKAYKECGDWREALSL 987 (1265)
T ss_pred HhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHhccH----H----HHHHHHHHhccHHHHHHH
Confidence 5566666666665432222 2346666777777777777776666554221 1 112334456666666555
Q ss_pred HHHHHHhCCCCHHHH---HHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 447 LQEAYATIPNSEEIW---LAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 447 l~~a~~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
..+. .+.-.++. ..++..+...+++-+|-++....+.
T Consensus 988 a~ql---~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 988 AAQL---SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhh---cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 4433 23323333 4566667777777777777666553
No 401
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.69 E-value=24 Score=33.03 Aligned_cols=55 Identities=24% Similarity=0.103 Sum_probs=25.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 040951 402 THGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456 (701)
Q Consensus 402 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~ 456 (701)
+.+...+++...+.-++..|.+......+-+++.-.|++++|...++-+-...|+
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3344444444444444444444444444444444444444444444444444443
No 402
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=73.66 E-value=1.2e+02 Score=31.52 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 529 LMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 529 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
..+-..|...+.++.|.....+.. .|.. ....+.+|.+-.- +++|..|.++|-+|+.+.|.+
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkai---qldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAI---QLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHh---hcchhHHHHHHHHHHHhCcch
Confidence 334444555555555555544432 2221 2233444555555 566666666666666666653
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.47 E-value=23 Score=33.24 Aligned_cols=118 Identities=17% Similarity=0.124 Sum_probs=80.4
Q ss_pred HHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH---HHHHHHHHHhhhccCCC
Q 040951 501 ERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP---LWYSLANLEEKRNGLNG 577 (701)
Q Consensus 501 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~g~ 577 (701)
+...+...+++...+.-++..|.+......+.+++.-.|++++|...++-+-...|+... +|..+.+++..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~------ 84 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAA------ 84 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH------
Confidence 456788999999999999999999999999999999999999999999999888888733 33333333322
Q ss_pred HHHHH-HHHHHHHHhCCC----CHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHhCCCCH
Q 040951 578 LSKAR-AVLSVARLKNPL----NPEIWLAT--IRAESKHG-NKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 578 ~~~A~-~~~~~a~~~~p~----~~~~~~~l--~~~~~~~g-~~~~A~~~~~~al~~~p~~~ 630 (701)
+ ++|.- ...|. .+..|... +.+....+ .-+.+..+-+.+++.-|..+
T Consensus 85 ----R~evfag--~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 85 ----RNEVFAG--GAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred ----HHHHhcc--CCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 2 12221 12232 23445443 33333333 45556677788888887664
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.21 E-value=95 Score=30.27 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPS------FFNLWLMLGQLEERLGHLKEAKEAYQS 550 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~ 550 (701)
.+-..+|..+...|++++|..+|+.+...+.. ...+...+..++...|+.+..+.+.-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34445555666666666666666666544322 133445555566666666665554433
No 405
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.03 E-value=17 Score=35.63 Aligned_cols=54 Identities=20% Similarity=0.039 Sum_probs=32.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 040951 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQE 449 (701)
Q Consensus 396 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 449 (701)
.+..|...|.+.+|..+.+++++.+|-+...|..+..++...||--.+...|++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344555666666666666666666666666666666666666665555444443
No 406
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=72.42 E-value=77 Score=28.89 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 040951 576 NGLSKARAVLSVARLKNPLNPEIWLATIRAESKH----GNKKEADSFIAKALQK 625 (701)
Q Consensus 576 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~ 625 (701)
.+.++|..+--+|-++. ++.+..++.++|..- .+-++|..+-.+|.+.
T Consensus 182 kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 182 KDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 45566666655555443 444555555555432 2445555555555443
No 407
>PF13041 PPR_2: PPR repeat family
Probab=72.14 E-value=22 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 562 WYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 562 ~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
|..+...+.+ .|++++|.++|++..+
T Consensus 6 yn~li~~~~~---~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCK---AGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHH---CcCHHHHHHHHHHHHH
Confidence 3344444444 4444444444444443
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.04 E-value=8.3 Score=25.92 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 040951 428 LMGAKEKWLAGDVPAARDILQEAYA 452 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a~~ 452 (701)
+.+|..|...|+.+.|+.+++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4456666666666666666666664
No 409
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=71.93 E-value=8.3 Score=24.96 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHH
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGL 518 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al 518 (701)
+..+|.+....++|++|+.-|.+++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 410
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=71.08 E-value=1.1e+02 Score=30.22 Aligned_cols=139 Identities=13% Similarity=0.048 Sum_probs=82.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHH--HHHcCC-h---HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 398 QLEKTHGSRESLIALLRKAVTYFPQ----AEVLWLMGAKE--KWLAGD-V---PAARDILQEAYATIPNSEEIWLAAFKL 467 (701)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~--~~~~g~-~---~~A~~~l~~a~~~~p~~~~~~~~la~~ 467 (701)
..+...+++++....+.+......+ ... |+..... ...... . ....+.++.-++.+|++..+++.+|.+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 4456778888888888877654222 111 2211111 111111 1 246788888999999999999988887
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040951 468 EFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEA 547 (701)
Q Consensus 468 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 547 (701)
+.... -.+=-......-+..-|.....+ .+.|...+.+++.++|....++..+..+....|.++=-..+
T Consensus 87 ~~~~A-----w~~RG~~~A~~V~~~~W~~~~~~------~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 87 WVHRA-----WDIRGSGYASTVTEAQWLGAHQA------CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAAL 155 (277)
T ss_pred HHHHH-----HHHHccchhcccCHHHHHHHHHH------HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHH
Confidence 75421 11100000001114445443333 37788899999999999988888888887777776544443
Q ss_pred H
Q 040951 548 Y 548 (701)
Q Consensus 548 ~ 548 (701)
+
T Consensus 156 ~ 156 (277)
T PF13226_consen 156 F 156 (277)
T ss_pred H
Confidence 3
No 411
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=71.04 E-value=90 Score=32.04 Aligned_cols=145 Identities=13% Similarity=0.035 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh-----CCCCHHHHHHH---HHHHHHcCCH--HHHH
Q 040951 477 ARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKR-----FPSFFNLWLML---GQLEERLGHL--KEAK 545 (701)
Q Consensus 477 A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l---a~~~~~~~~~--~~A~ 545 (701)
...++..+.+.+|+ .+.|+.+..+..+..-..+-+..++.++.. .|....+=.+. +..+...++. ..-+
T Consensus 108 ~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR 187 (372)
T PRK15338 108 LEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLR 187 (372)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHH
Confidence 33778888888888 788888887766444334344445444432 12122222222 2334444444 6678
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCCH---HHHHH
Q 040951 546 EAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN-----PLNPEIWLATIRAESKHGNK---KEADS 617 (701)
Q Consensus 546 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~g~~---~~A~~ 617 (701)
.+|+..+..+-.-..+|..+..-| . ..+.+..+.++.+++.-+ |... -..+|.+..+.|+. ..+..
T Consensus 188 ~lYR~Fl~~d~~~~~iY~~Wieey-g---~~~R~~il~Fl~~AL~~DlqS~~Ps~~--~~EFG~l~~~l~~LR~L~Sad~ 261 (372)
T PRK15338 188 ASYRQFLQSESHEVEIYSDWIASY-G---YQRRLVVLDFIEGSLLTDIDANDASCS--RLEFGQLLRRLTQLKMLRSADL 261 (372)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHh-C---ccHHHHHHHHHHHHHHhHHhcCCCCCC--HHHHHHHHHHHHHHHHHHhhHH
Confidence 888888877665555665555544 2 467788888888887644 4332 35566666655544 34444
Q ss_pred HHHHHHHhCC
Q 040951 618 FIAKALQKCP 627 (701)
Q Consensus 618 ~~~~al~~~p 627 (701)
.|-+-+...|
T Consensus 262 ~F~~~~~~~~ 271 (372)
T PRK15338 262 LFVKTLLSYP 271 (372)
T ss_pred HHHHHHHhhH
Confidence 5555544443
No 412
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=70.98 E-value=70 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=16.1
Q ss_pred HcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Q 040951 470 ENRELERARMLLAKARDMGGT-ERVWMKSAIVER 502 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~ 502 (701)
..+.......+++.++...+. +.++..++.++.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 334555555555555554333 444444444444
No 413
>PF12854 PPR_1: PPR repeat
Probab=70.60 E-value=10 Score=23.70 Aligned_cols=13 Identities=8% Similarity=-0.138 Sum_probs=4.7
Q ss_pred HHHHcCcHHHHHH
Q 040951 467 LEFENRELERARM 479 (701)
Q Consensus 467 ~~~~~~~~~~A~~ 479 (701)
.+.+.|+.++|.+
T Consensus 16 ~~Ck~G~~~~A~~ 28 (34)
T PF12854_consen 16 GYCKAGRVDEAFE 28 (34)
T ss_pred HHHHCCCHHHHHH
Confidence 3333333333333
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.52 E-value=93 Score=30.34 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhhCCC------CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhc
Q 040951 542 KEAKEAYQSGCNQCPN------CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN------PEIWLATIRAESKH 609 (701)
Q Consensus 542 ~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~ 609 (701)
...++++.++...... ...+...+|..+.. .|++++|..+|+.+....... ..+...+..|....
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~---~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR---LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3445555555543322 13456677888888 888888888888886554322 24555566777778
Q ss_pred CCHHHHHHHHHH
Q 040951 610 GNKKEADSFIAK 621 (701)
Q Consensus 610 g~~~~A~~~~~~ 621 (701)
|+.+..+.+.-+
T Consensus 232 ~~~~~~l~~~le 243 (247)
T PF11817_consen 232 GDVEDYLTTSLE 243 (247)
T ss_pred CCHHHHHHHHHH
Confidence 877766655433
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.40 E-value=89 Score=32.76 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=37.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHH--HHHHHHHcCChHHHHHHHHHHHHh
Q 040951 397 AQLEKTHGSRESLIALLRKAVTYFPQAEV--LWLM--GAKEKWLAGDVPAARDILQEAYAT 453 (701)
Q Consensus 397 a~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~--~a~~~~~~g~~~~A~~~l~~a~~~ 453 (701)
+.-..+.++|..|..+|..+...-|.... .+.. .|..+|..-++.+|.+.++..+..
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44445778888888888887775344333 2333 344556788888888888887765
No 416
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.71 E-value=2.3e+02 Score=33.16 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSG 551 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~a 551 (701)
.+|...+.++.+.|+.++|+.+|-..
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~ 710 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHE 710 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44555555555555555555555443
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.29 E-value=2.1e+02 Score=32.70 Aligned_cols=200 Identities=10% Similarity=-0.027 Sum_probs=104.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTK-KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARD 445 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 445 (701)
.+..-|+-|+.+.+.- ..+++. .++...+|..+...|++++|...|-+.+..-.... +... +.......+-..
T Consensus 345 ~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-Vi~k----fLdaq~IknLt~ 418 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-VIKK----FLDAQRIKNLTS 418 (933)
T ss_pred HHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-HHHH----hcCHHHHHHHHH
Confidence 5666777777665432 223332 35788999999999999999999988875422111 1111 112222333444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERV---WMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
+++...+..-.+.+--..+..+|.+.++.++-.+...+ .+.... .-....+++..+-.++|.-+-.+. .
T Consensus 419 YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~----~ 490 (933)
T KOG2114|consen 419 YLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKF----K 490 (933)
T ss_pred HHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh----c
Confidence 55555555444444455667778888877765544433 332000 011122333444444444333322 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 523 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
.+.. .+-.++...+++++|..++... .|.. ......+|..+.. ..+++-...+-+.+.
T Consensus 491 ~he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~----h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 491 KHEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE----HDPEETMKILIELIT 549 (933)
T ss_pred cCHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh----hChHHHHHHHHHHHh
Confidence 1111 2223456778888888877653 2222 3345566666654 344555555444443
No 418
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.21 E-value=1.5e+02 Score=33.90 Aligned_cols=204 Identities=11% Similarity=0.005 Sum_probs=105.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHH
Q 040951 433 EKWLAGDVPAARDILQEAYATIPN-SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEER 511 (701)
Q Consensus 433 ~~~~~g~~~~A~~~l~~a~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~ 511 (701)
++.+..-++-|+.+-+.- ..+++ -..+...+|..+...|++++|...|-+.+.....+.+...+ .......+-.
T Consensus 343 iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----Ldaq~IknLt 417 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----LDAQRIKNLT 417 (933)
T ss_pred HHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----cCHHHHHHHH
Confidence 344455566666554431 11122 23466678888888888888888887777654333333332 1222333444
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH--HHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 040951 512 GFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL--WYSLANLEEKRNGLNGLSKARAVLSVAR 589 (701)
Q Consensus 512 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~g~~~~A~~~~~~a~ 589 (701)
.+++...+..-.+.+--..+-.+|.++++.++-.+..++ ++..... .-....+..+ .+-.+.|.-+..+.
T Consensus 418 ~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~---snyl~~a~~LA~k~- 489 (933)
T KOG2114|consen 418 SYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRK---SNYLDEAELLATKF- 489 (933)
T ss_pred HHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHH---hChHHHHHHHHHHh-
Confidence 555666655555555556667777888887775555443 3321100 1111223333 44445554443332
Q ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHH
Q 040951 590 LKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKL 669 (701)
Q Consensus 590 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~ 669 (701)
..+..+. -.++...|++++|..++.. .|-+ +--..+..+|+.
T Consensus 490 ---~~he~vl---~ille~~~ny~eAl~yi~s----lp~~----------------------------e~l~~l~kyGk~ 531 (933)
T KOG2114|consen 490 ---KKHEWVL---DILLEDLHNYEEALRYISS----LPIS----------------------------ELLRTLNKYGKI 531 (933)
T ss_pred ---ccCHHHH---HHHHHHhcCHHHHHHHHhc----CCHH----------------------------HHHHHHHHHHHH
Confidence 1122221 1234557788888877554 3421 012345668888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 040951 670 FWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 670 ~~~~g~~~~A~~~~~~al~ 688 (701)
+... ..++-...+-+..+
T Consensus 532 Ll~h-~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 532 LLEH-DPEETMKILIELIT 549 (933)
T ss_pred HHhh-ChHHHHHHHHHHHh
Confidence 7754 55555655555554
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.67 E-value=52 Score=34.49 Aligned_cols=124 Identities=13% Similarity=0.051 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH-------HHhCCC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHH--HHHHH
Q 040951 428 LMGAKEKWLAGDVPAARDILQEA-------YATIPN-SEEIWLAAFKLEFENRELERARMLLAKARDMGGTER--VWMKS 497 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a-------~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~ 497 (701)
..+.+++...||+..|+++++-. +...|. ....++..|-.|...++|..|++.|...+-.....+ .....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~ 205 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRS 205 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 34455666677777777766432 112222 344667788888888888888888887764211100 00000
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCC--CHHHHHH----HHHHH--HHcCCHHHHHHHHHHH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPS--FFNLWLM----LGQLE--ERLGHLKEAKEAYQSG 551 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~----la~~~--~~~~~~~~A~~~~~~a 551 (701)
.+...-.+..++...++--++...|. +..+... ++.-. .+.|+.+.-.++|..+
T Consensus 206 ~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 206 YQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred chhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 11111123345555566666666775 2222222 22221 3456666666666666
No 420
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.54 E-value=2.2e+02 Score=32.25 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHh--CCCCcccccc
Q 040951 648 KGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWF-------NKAVSL--DPDTGDFWAL 699 (701)
Q Consensus 648 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-------~~al~~--~p~~~d~w~~ 699 (701)
..++|++.|. .-..+..+..++-++|+..+|+... ++|++. +-+++|.|..
T Consensus 636 ~lekA~eiC~-q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~ 695 (846)
T KOG2066|consen 636 NLEKALEICS-QKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWED 695 (846)
T ss_pred CHHHHHHHHH-hhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHH
Confidence 3567888886 3555666666777788888887764 455554 4456677754
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.38 E-value=1.2e+02 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.064 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHH-----hCCCCH---HHHHHHHHHH-HhcCCHHHHHHHHHHHHHh
Q 040951 578 LSKARAVLSVARL-----KNPLNP---EIWLATIRAE-SKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 578 ~~~A~~~~~~a~~-----~~p~~~---~~~~~l~~~~-~~~g~~~~A~~~~~~al~~ 625 (701)
.++|...|++|+. ..|.+| .+.++++.++ .-.|+.++|..+..+++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3566777777664 357776 3444445444 5589999998888887664
No 422
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.15 E-value=83 Score=27.13 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=21.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 040951 429 MGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL 462 (701)
Q Consensus 429 ~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~ 462 (701)
+-|+-....|..++..+++.+.....+-+..-|+
T Consensus 7 meAK~~ildG~V~qGveii~k~v~Ssni~E~NWv 40 (161)
T PF09205_consen 7 MEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWV 40 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHcCcCCcccccee
Confidence 3344555677788888888777777666555554
No 423
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.97 E-value=2.3e+02 Score=32.09 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 040951 394 LKAAQLEKTHGSRESLIALLRK 415 (701)
Q Consensus 394 ~~la~~~~~~g~~~~A~~~~~~ 415 (701)
..+..++.-.|.++.|+..+-+
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHh
Confidence 3445566677888888777766
No 424
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=66.66 E-value=83 Score=32.70 Aligned_cols=88 Identities=9% Similarity=-0.127 Sum_probs=64.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcH------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 040951 397 AQLEKTHGSRESLIALLRKAVTYFPQAE------------------VLWLMGAKEKWLAGDVPAARDILQEAYATIPNSE 458 (701)
Q Consensus 397 a~~~~~~g~~~~A~~~~~~al~~~p~~~------------------~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~ 458 (701)
+..+.+.++|..|..-|..+++.|.+-. .+--.+..+|...++.+-|+..-.+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4566778889999999999988864211 1233566778888888888888888888888877
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHH
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKA 484 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a 484 (701)
.-++..+-+.....+|.+|-+.+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776655443
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.29 E-value=2.3e+02 Score=31.96 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHH---cCChHHHHHHHHHHHHhC-CCCHH
Q 040951 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA------EVLWLMGAKEKWL---AGDVPAARDILQEAYATI-PNSEE 459 (701)
Q Consensus 390 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~---~g~~~~A~~~l~~a~~~~-p~~~~ 459 (701)
+++-..+...|....+|+..+++.+.. +.-|+. ..+.+.|+-.+-+ -||-++|+...-.+++.. |-.++
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 344555555566666777666665543 333421 1222333333322 466777777777766654 33455
Q ss_pred HHHHHHHHHHH---------cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 040951 460 IWLAAFKLEFE---------NRELERARMLLAKARDMGGTERVWMKSAIVERELG 505 (701)
Q Consensus 460 ~~~~la~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g 505 (701)
.+...|.+|-. .+..+.|...|.++.+..|....=+.++.++...|
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh
Confidence 55555555433 24456677777777777776444444444444433
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.45 E-value=1.3e+02 Score=31.59 Aligned_cols=61 Identities=25% Similarity=0.143 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HHH--HHHHHHHHcCcHHHHHHHHHHHHhc
Q 040951 427 WLMGAKEKWLAGDVPAARDILQEAYATIPNSEE--IWL--AAFKLEFENRELERARMLLAKARDM 487 (701)
Q Consensus 427 ~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~--~~~--~la~~~~~~~~~~~A~~~~~~a~~~ 487 (701)
....+..++..+++..|..+|..+...-|.+.. .+. ..+..++..-++.+|.+.++.....
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566677899999999999999886455444 222 3445566788999999999988764
No 427
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=64.57 E-value=26 Score=34.74 Aligned_cols=61 Identities=16% Similarity=0.089 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 477 ARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER 537 (701)
Q Consensus 477 A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 537 (701)
|+..|.+|....|+ ...|..+|.++...|+.-.|+-.|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555 55555555555555555555555555543332224444444444433
No 428
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.41 E-value=1.8e+02 Score=31.96 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=28.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAV 417 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 417 (701)
.+.|+++.|..+..++ ++..-|..+++.....|++..|.++|.++-
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 5566666665544332 345556677777777777766666666653
No 429
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.54 E-value=1.8e+02 Score=29.44 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
+.+..+.-|.+.++++.|+--|.++..
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~ 153 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANE 153 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence 344566677778888888877777654
No 430
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.45 E-value=2.3e+02 Score=30.54 Aligned_cols=219 Identities=13% Similarity=0.081 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEE 536 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 536 (701)
+......+..++..+....-...++.+.+....+...++.++++|... ..++-..++++.++.+-++...-..++..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344455555666666666666677777777666666777777777766 4566677778777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHhhhC-CC--C---HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHh
Q 040951 537 RLGHLKEAKEAYQSGCNQC-PN--C---IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL-NPEIWLATI-RAESK 608 (701)
Q Consensus 537 ~~~~~~~A~~~~~~al~~~-p~--~---~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~-~~~~~ 608 (701)
+ ++.+.+...|.+++... |. + -++|-.+..+- ..+.+.-.....+....+.. -..+..... .-|..
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-----~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-----GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-----cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6 77778888888876543 21 1 23454444321 23455555554444433332 223333333 45666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC-CccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 609 HGNKKEADSFIAKALQKCPNSGILWAELIKMVP-HHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAV 687 (701)
Q Consensus 609 ~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~-~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 687 (701)
..++.+|+.++...++.+..+...--+.+.... +-... .+.+-++....+--.-.++-.+..-|++.+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~-----------~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGH-----------SQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccc-----------hhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 788999999998888887665332222222110 00001 122333334444444566777777777777
Q ss_pred HhCCCC
Q 040951 688 SLDPDT 693 (701)
Q Consensus 688 ~~~p~~ 693 (701)
..+..|
T Consensus 287 ~f~eGn 292 (711)
T COG1747 287 HFDEGN 292 (711)
T ss_pred eeccCc
Confidence 666544
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.35 E-value=25 Score=32.77 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 476 RARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 476 ~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
..++..++.+...|++.++..++.++...|+.++|.....++...+|
T Consensus 129 ~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444555555666666777777777777777777777777777766
No 432
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=61.60 E-value=1.4e+02 Score=30.77 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCH-
Q 040951 294 SVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSI- 372 (701)
Q Consensus 294 ~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~- 372 (701)
.++..+++.+|+..+.|..+..+..+..-.+.-.+.++.++..+......-....=+..|. .|..+...++.
T Consensus 110 ~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL-------~Ak~Fs~~~~ls 182 (372)
T PRK15338 110 EFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCAL-------KARLFGKALSLK 182 (372)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHH-------HHHHHHhhcCCC
Confidence 4555566666666666666666555333333344444444443322211000000011111 11222333333
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040951 373 -ETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVT 418 (701)
Q Consensus 373 -~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 418 (701)
..-+.+|...+..+-.-..+|..+..-| -..+.+.+..++.+++.
T Consensus 183 a~~LR~lYR~Fl~~d~~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~ 228 (372)
T PRK15338 183 PGLLRASYRQFLQSESHEVEIYSDWIASY-GYQRRLVVLDFIEGSLL 228 (372)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHH
Confidence 5556666666666655555555555544 33445566666666654
No 433
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.87 E-value=69 Score=24.72 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=23.1
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCCHHHHHHH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQ---LEERLGHLKEAKEA 547 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---~~~~~~~~~~A~~~ 547 (701)
...+..+|+..+.++++..++.+.-+..+|. +|...|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665555444444333 34444555444443
No 434
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.49 E-value=27 Score=38.77 Aligned_cols=169 Identities=13% Similarity=0.087 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHH---HhCChHHHHHHHHHHHHhC-CCCHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGT------ERVWMKSAIVER---ELGNNAEERGFIEEGLKRF-PSFFN 526 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~-p~~~~ 526 (701)
++++...+...|....+|+.-+++.+..-.+..+ ..+.+.++-.+- .-|+-++|+...-.+++.. |-.++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4556666666677777777777776665443212 112222222221 2367777877777776654 44577
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCC-CHHHHHHHHHHHHHhCC---
Q 040951 527 LWLMLGQLEER---------LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN-GLSKARAVLSVARLKNP--- 593 (701)
Q Consensus 527 ~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g-~~~~A~~~~~~a~~~~p--- 593 (701)
.+...|.+|.. .+..+.|.+.|+++++..|.. ..-++++.++.. .| .++...++=.-++..+.
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~a---aG~~Fens~Elq~IgmkLn~Llg 355 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRA---AGEHFENSLELQQIGMKLNSLLG 355 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHH---hhhhccchHHHHHHHHHHHHHhh
Confidence 77777777654 356677888888888887764 222334444433 22 22322222222222220
Q ss_pred --CCH----HHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 594 --LNP----EIWLA--TIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 594 --~~~----~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
.+. +.|-- +-.+-.-.+++.+|+..-+..+++.|..
T Consensus 356 rKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 356 RKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 010 11211 1111223578888888888888887753
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.20 E-value=3.4e+02 Score=31.82 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 040951 310 WIAAAKLEEANGNTSMVGKIIERGIRAL 337 (701)
Q Consensus 310 ~~~~a~~~~~~g~~~~a~~~~~~a~~~~ 337 (701)
+..++.+|...|..++|.+++....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 5668888899999999999998887743
No 436
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.54 E-value=2.5e+02 Score=29.84 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 663 FAAVAKLFWHDRKVDKARNWFNKAVSLDP 691 (701)
Q Consensus 663 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 691 (701)
+..-|.-|.+.|+...|...|.+|+....
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 44456777889999999999999988765
No 437
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.46 E-value=17 Score=21.43 Aligned_cols=28 Identities=7% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 662 VFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 662 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3567888999999999999999987653
No 438
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=58.24 E-value=32 Score=34.74 Aligned_cols=47 Identities=30% Similarity=0.356 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 040951 290 GVARSVLNKARKKLPK---ERAIWIAAAKLEEANGNTSMVGKIIERGIRA 336 (701)
Q Consensus 290 ~~A~~~l~~a~~~~p~---~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~ 336 (701)
++...+|+..++..|. ....|+.+|+++...|.++.++.+|+.|+..
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 4555566666666554 3567888888888888888888888888774
No 439
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.23 E-value=18 Score=21.31 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQ 624 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~ 624 (701)
|..+...+.+.|++++|..+|.+..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55666777777777777777776544
No 440
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.83 E-value=3.5e+02 Score=30.86 Aligned_cols=51 Identities=12% Similarity=-0.063 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLT--KKSIWLKAAQLEKTHGSRESLIALLRKAV 417 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 417 (701)
.+.+.|++|+.+-+.....-|. -..++..+..-+...|++++|-..+-+++
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 7788999999887776665554 34578888888888888888877665443
No 441
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.62 E-value=82 Score=24.33 Aligned_cols=45 Identities=18% Similarity=0.013 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHhcCCHHHHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWLATIR---AESKHGNKKEADSFI 619 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~---~~~~~g~~~~A~~~~ 619 (701)
..+..+|+..+.++++..++.++-|..+|. .+...|++.+.+..-
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888877777766555554 455566666655543
No 442
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.31 E-value=2.8e+02 Score=29.57 Aligned_cols=29 Identities=31% Similarity=0.201 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
...|.-+...|+...|..+|.+++.....
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 33456788899999999999999887653
No 443
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=56.18 E-value=2.3e+02 Score=28.69 Aligned_cols=181 Identities=14% Similarity=0.001 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 040951 406 RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKAR 485 (701)
Q Consensus 406 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 485 (701)
.++++.+-.-.....|..+++.-..+-++........=...=-..+-..-.+...| ..+-++++..++.++.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW--------~r~lI~eg~all~rA~ 283 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLW--------DRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhh--------hHHHHHHHHHHHHHHH
Confidence 46677776767777777777766665555432111000000000000001122233 2233566777777776
Q ss_pred hcC-CCHH-HHHHHHHHHH-----HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--CC
Q 040951 486 DMG-GTER-VWMKSAIVER-----ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ--CP 556 (701)
Q Consensus 486 ~~~-p~~~-~~~~~a~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p 556 (701)
... |.+. +.-..+.++. ..-++..-..+|.-.....|+ |.+-++.+.......-.+.+....+..... -.
T Consensus 284 ~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~ 362 (415)
T COG4941 284 ASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLD 362 (415)
T ss_pred HcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccc
Confidence 543 3322 1112222221 123555555566655555565 555555555555555556666666655443 23
Q ss_pred CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 557 NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 557 ~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
....++-..+.++.+ .|+..+|+..|++++...++..+-
T Consensus 363 gy~~~h~~RadlL~r---Lgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 363 GYHLYHAARADLLAR---LGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred cccccHHHHHHHHHH---hCChHHHHHHHHHHHHhcCChHHH
Confidence 344556677777777 788888888888887777665543
No 444
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=56.15 E-value=28 Score=21.48 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Q 040951 661 HVFAAVAKLFWHD----RKVDKARNWFNKAVSLD 690 (701)
Q Consensus 661 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~ 690 (701)
...+.+|.+|..- .+..+|..||++|.+..
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4567788888742 48999999999997653
No 445
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.31 E-value=38 Score=31.52 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 659 DPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 659 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
+|.++..++.++...|+.++|..+..++..+.|.
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4999999999999999999999999999999994
No 446
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.10 E-value=46 Score=31.86 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH
Q 040951 608 KHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 608 ~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
..++...|..++++|++++|+.+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC
Confidence 44577889999999999988753
No 447
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.79 E-value=87 Score=27.42 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLG 539 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 539 (701)
.+..+..++-....|++.-|..+.+.++..+|++..+....+.++.+.|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3344444444556777788888888888888887777777777766554
No 448
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.76 E-value=66 Score=30.80 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCc
Q 040951 661 HVFAAVAKLFW---------HDRKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 661 ~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 694 (701)
..+-..|..+. ..++...|..+|++|++++|+.|
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 34555677663 45688899999999999999876
No 449
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=53.75 E-value=45 Score=33.05 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 510 ERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 510 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
|+.+|.+|+...|++...|..+|.++...|+.-.|.-.|-+++-.....+.+..++..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888777775443345566666555544
No 450
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=52.79 E-value=4.6 Score=44.45 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHh--cCCC--HHHHHHHHHHHHHhCChHHHHHHHHHH-HHhCCC--CHHHHHHHHHHH
Q 040951 463 AAFKLEFENRELERARMLLAKARD--MGGT--ERVWMKSAIVERELGNNAEERGFIEEG-LKRFPS--FFNLWLMLGQLE 535 (701)
Q Consensus 463 ~la~~~~~~~~~~~A~~~~~~a~~--~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~--~~~~~~~la~~~ 535 (701)
..+..+...|++..|..++..+-. ..+. ....+..+.+....|++..|+..+... ...-|. ....+...+.++
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~ 108 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAY 108 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHH
Confidence 444555555555555555554441 1222 233333344555555555555555421 111111 122344445555
Q ss_pred HHcCCHHHHHHHH
Q 040951 536 ERLGHLKEAKEAY 548 (701)
Q Consensus 536 ~~~~~~~~A~~~~ 548 (701)
...|++-+|...+
T Consensus 109 ~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 109 EQQGDPLAAARER 121 (536)
T ss_dssp -------------
T ss_pred HhcCCHHHHHHHH
Confidence 5555555544443
No 451
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=51.80 E-value=4.8 Score=44.25 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHH--hcCCC--HHHHHHH
Q 040951 425 VLWLMGAKEKWLAGDVPAARDILQEAYA--TIPN-SEEIWLAAFKLEFENRELERARMLLAKAR--DMGGT--ERVWMKS 497 (701)
Q Consensus 425 ~~~~~~a~~~~~~g~~~~A~~~l~~a~~--~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~p~--~~~~~~~ 497 (701)
...+..++.+...|++..|..++.+.-. ..|. .....+..+.+....|+++.|+..+...- ...+. ...+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 3445555666666777777666665541 2222 22334455666666677777777665311 11111 3344445
Q ss_pred HHHHHHhCChHHHHHHH
Q 040951 498 AIVERELGNNAEERGFI 514 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~ 514 (701)
+.++...|++-.|...+
T Consensus 105 A~a~~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARER 121 (536)
T ss_dssp -----------------
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 66666666666555543
No 452
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=51.31 E-value=3.8e+02 Score=29.65 Aligned_cols=179 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 040951 370 GSIETARAIFSHACTVFLTKK-----SIWLKAAQLEKTH------------GSRESLIALLRKAVTYFPQAEVLWLMGAK 432 (701)
Q Consensus 370 ~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 432 (701)
+..+.+..+....-...|+++ .+|..+..++... |+.++|+..+++. -............+.
T Consensus 272 ~~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~-c~~~~~~lpi~~~~~ 350 (547)
T PF14929_consen 272 QPQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKF-CISSTCALPIRLRAH 350 (547)
T ss_pred CcHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHh-ccCCCccchHHHHHH
Q ss_pred HHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hCChHH
Q 040951 433 EKWLAG--DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERE-LGNNAE 509 (701)
Q Consensus 433 ~~~~~g--~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~-~g~~~~ 509 (701)
++...+ ....-..+|+.+...+|......-.+...+...-....-.++..--+...|...+|..++.++.+ .++++.
T Consensus 351 lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~ 430 (547)
T PF14929_consen 351 LLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQKDYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFED 430 (547)
T ss_pred HHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccc
Q ss_pred HHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040951 510 ERGFIEEGLKR---------FPSFFNLWLMLGQLEERLGHLKEAKEAYQ 549 (701)
Q Consensus 510 A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 549 (701)
-.+....+++. +..+..+|..+..........+-..+..+
T Consensus 431 ~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~~~~~~~~W~ 479 (547)
T PF14929_consen 431 KEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFDLDWVREEWR 479 (547)
T ss_pred cHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhhhhchHHHHH
No 453
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.11 E-value=2.4e+02 Score=27.78 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCH---HHHH
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERL--GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGL---SKAR 582 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~---~~A~ 582 (701)
+.-+..+..+++-+|.+..+|...-.++... .++..-..+.++.+..+|.+.-.|...-.+.......+++ ..-.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 4455667888888888888888777776554 5677777778888888888866664433333110002333 3334
Q ss_pred HHHHHHHHhCCCCHHHHHHH---HHHHHhcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 040951 583 AVLSVARLKNPLNPEIWLAT---IRAESKHGN------KKEADSFIAKALQKCPNSGILWAELIK 638 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~l---~~~~~~~g~------~~~A~~~~~~al~~~p~~~~l~~~~~~ 638 (701)
++-..++..++.|..+|... .......|+ +.+-+.+.-.++...|++...|...-.
T Consensus 171 eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred HhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 44456677788888888776 222233443 233345555566678888888876444
No 454
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.29 E-value=35 Score=20.56 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHH
Q 040951 462 LAAFKLEFENRELERARMLLAKAR 485 (701)
Q Consensus 462 ~~la~~~~~~~~~~~A~~~~~~a~ 485 (701)
..+...+.+.|++++|.++|.+..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555555544
No 455
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=50.20 E-value=33 Score=20.71 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 598 IWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 598 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
.|..+...+.+.|++++|..+|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3666777888888888888888876553
No 456
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.08 E-value=3e+02 Score=27.93 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 659 DPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 659 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
+|.+-+.-|.++...|++.++...+..++-+.|+-
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 57777777777777788888888888777776653
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.20 E-value=3.5e+02 Score=28.32 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC--C------
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP--L------ 594 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p--~------ 594 (701)
..+..+|+.|...|+++.|.+.|.++-..|... +..|..+..+-.. .|++..-..+..+|.+... .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~---~~nw~hv~sy~~~A~st~~~~~~~~q~v 227 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIY---MGNWGHVLSYISKAESTPDANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh---hcchhhhhhHHHHHHhCchhhhhHHHhc
Confidence 466778888888999999999998876666553 5667788887777 7888777777766655410 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 595 NPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 595 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
.+.+....|......+.+..|...+-.+
T Consensus 228 ~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1123333444445556787777776544
No 458
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=47.83 E-value=5.8e+02 Score=30.79 Aligned_cols=21 Identities=10% Similarity=-0.073 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhcHHHHHHHHH
Q 040951 156 IQAARLEELAKEEAAARKLIT 176 (701)
Q Consensus 156 i~~arl~~~~g~~~~A~~~~~ 176 (701)
++..|=.-.++++..|.+...
T Consensus 681 La~vr~~l~~~~y~~AF~~~R 701 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMR 701 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666655543
No 459
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=47.14 E-value=3.2e+02 Score=27.59 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 499 IVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
.-+...|.++.|+..++..+...++. ....+.+++++...|..+-|...|+...+
T Consensus 221 ~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 221 RALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455666777777776654433321 22334556667777777777777766655
No 460
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=46.67 E-value=5.3e+02 Score=30.05 Aligned_cols=107 Identities=11% Similarity=0.004 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Q 040951 395 KAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG---DVPAARDILQEAYATI---PNSEEIWLAAFKLE 468 (701)
Q Consensus 395 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~l~~a~~~~---p~~~~~~~~la~~~ 468 (701)
.+...+...|+++.|..++.+.- ...++....+++.++...+ +..++....+++.... |.....+...+.+.
T Consensus 712 RLL~sy~~~g~~erA~glwnK~Q--V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a 789 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQ--VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFA 789 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCc--CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHH
Confidence 34556777888888888887764 2345667778888876643 5677777777777655 44566677788888
Q ss_pred HHcCcHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHH
Q 040951 469 FENRELERARMLLAKARDMGGT--ERVWMKSAIVERE 503 (701)
Q Consensus 469 ~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~ 503 (701)
.+.++-+.|.++|++.-+..+. .+.+.....+...
T Consensus 790 ~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~ 826 (1088)
T KOG4318|consen 790 TQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVK 826 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHh
Confidence 8888888999999998887654 5555555555443
No 461
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=46.58 E-value=3.8e+02 Score=28.30 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=40.1
Q ss_pred HHHHHHHHhCChHHHHHHHHHH-------HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 496 KSAIVERELGNNAEERGFIEEG-------LKRF-PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 496 ~~a~~~~~~g~~~~A~~~~~~a-------l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
.+.+++.-.|||..|++.++.. .... +-...+++..|-.|.-+++|.+|++.|..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778888887776542 1111 22456788888888888999999888888754
No 462
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=46.15 E-value=43 Score=21.12 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=21.0
Q ss_pred hHHHHHHH--HHHHhcC-----CHHHHHHHHHHHHHh
Q 040951 660 PHVFAAVA--KLFWHDR-----KVDKARNWFNKAVSL 689 (701)
Q Consensus 660 ~~~~~~lg--~~~~~~g-----~~~~A~~~~~~al~~ 689 (701)
|...+.+| .++..-. +.++|..||++|.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 45667788 4444221 589999999999865
No 463
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.08 E-value=35 Score=26.08 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=9.8
Q ss_pred HhCChHHHHHHHHHHHHh
Q 040951 503 ELGNNAEERGFIEEGLKR 520 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~ 520 (701)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 345556666655555543
No 464
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.70 E-value=3.7e+02 Score=27.96 Aligned_cols=43 Identities=30% Similarity=0.183 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 578 LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
.-+|+.+++.++...|.|+.+-+.++++|...|-...|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555555555555555555555555555555555543
No 465
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=45.65 E-value=2.4e+02 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 040951 659 DPHVFAAVAKLFWH----DRKVDKARNWFNKAVSL 689 (701)
Q Consensus 659 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 689 (701)
++.+-.++.+.|.. ..+.++|..+=.+|.++
T Consensus 199 ~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 199 IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 46666677777652 24677888888888765
No 466
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.27 E-value=3.9e+02 Score=28.14 Aligned_cols=345 Identities=13% Similarity=0.042 Sum_probs=173.5
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHCCC-CHHHHHHHHhccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChhHH
Q 040951 250 WKALVEISSEEEARILLHRAVECCPL-DVELWLALARLETYGVARSVLNKARKKL--PKERAIWIAAAKLEEANGNTSMV 326 (701)
Q Consensus 250 ~~~~~~l~~~~~A~~~l~~a~~~~P~-~~~l~~~l~~l~~~~~A~~~l~~a~~~~--p~~~~~~~~~a~~~~~~g~~~~a 326 (701)
...+..+...+.|+.+|+.+.+..-+ ..+....++....|..-.+++..++... | |......+..+..+.|++..+
T Consensus 214 I~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~P-nl~TfNalL~c~akfg~F~~a 292 (625)
T KOG4422|consen 214 IAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTP-NLFTFNALLSCAAKFGKFEDA 292 (625)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCC-chHhHHHHHHHHHHhcchHHH
Confidence 33444555778888888887654332 3456666666666766678888776543 5 577788888999999999999
Q ss_pred HHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCC-HHHHHHHHHHHHHh---------CCCCHHHHHHH
Q 040951 327 GKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGS-IETARAIFSHACTV---------FLTKKSIWLKA 396 (701)
Q Consensus 327 ~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~-~~~A~~~~~~al~~---------~p~~~~~~~~l 396 (701)
.+.+.+++.....-++.+....+....... .+.++ ...+..+....... .|++.-.+...
T Consensus 293 r~aalqil~EmKeiGVePsLsSyh~iik~f----------~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 293 RKAALQILGEMKEIGVEPSLSSYHLIIKNF----------KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHh----------cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 999988888777777776666665554332 23333 23344444433321 35544445455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCcHH---HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 040951 397 AQLEKTHGSRESLIALLRKAVTY------FPQAEV---LWLMGAKEKWLAGDVPAARDILQEAYAT--IPNSEEIWLAAF 465 (701)
Q Consensus 397 a~~~~~~g~~~~A~~~~~~al~~------~p~~~~---~~~~~a~~~~~~g~~~~A~~~l~~a~~~--~p~~~~~~~~la 465 (701)
..++....+.+-|.++-. .++. -|.+.. .+..+-.+..+....+.-...|+..+-. .|++. +...+.
T Consensus 363 M~Ic~~l~d~~LA~~v~~-ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~-~m~~~l 440 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHG-LLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ-TMIHLL 440 (625)
T ss_pred HHHHHHhhhHHHHHHHHH-HHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch-hHHHHH
Confidence 555555555555544332 2211 111111 1122222233344444444455444321 12211 111111
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHhCChHHHHHHHHHHH--HhCCCCH---HHHHHHHHHHHHcC
Q 040951 466 KLEFENRELERARMLLAKARDMGGTERVWMKSAIVE-RELGNNAEERGFIEEGL--KRFPSFF---NLWLMLGQLEERLG 539 (701)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~-~~~g~~~~A~~~~~~al--~~~p~~~---~~~~~la~~~~~~~ 539 (701)
+.....|.++-. +++|.....+- ...++.. ..++.... +.+|..+ .+-...+.+....
T Consensus 441 rA~~v~~~~e~i-------------pRiw~D~~~~ght~r~~l~--eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~- 504 (625)
T KOG4422|consen 441 RALDVANRLEVI-------------PRIWKDSKEYGHTFRSDLR--EEILMLLARDKLHPLTPEREQLQVAFAKCAADI- 504 (625)
T ss_pred HHHhhcCcchhH-------------HHHHHHHHHhhhhhhHHHH--HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH-
Confidence 111111111111 44444433221 1112211 11122111 2234433 2222222222111
Q ss_pred CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC---CCCH--HHHHHHHHHHHhcCCHHH
Q 040951 540 HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN---PLNP--EIWLATIRAESKHGNKKE 614 (701)
Q Consensus 540 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~--~~~~~l~~~~~~~g~~~~ 614 (701)
.++.+.-..-.....-.+......+.++.+ .|.+++|-++|.-.++.. |..| .+...+.+.-.+.+...+
T Consensus 505 --~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R---~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 505 --KEAYESQPIRQRAQDWPATSLNCIAILLLR---AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred --HHHHHhhHHHHHhccCChhHHHHHHHHHHH---cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 111111111111122234556667777788 899999999988876544 4443 234455555667778888
Q ss_pred HHHHHHHHHHhCCC
Q 040951 615 ADSFIAKALQKCPN 628 (701)
Q Consensus 615 A~~~~~~al~~~p~ 628 (701)
|..+++-++..+-.
T Consensus 580 A~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 580 AIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHcCch
Confidence 88888877655433
No 467
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.01 E-value=3.5e+02 Score=26.87 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=66.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHH--HHHcCC----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 040951 366 CKKRGSIETARAIFSHACTVFLT----KKSIWLKAAQL--EKTHGS----RESLIALLRKAVTYFPQAEVLWLMGAKEKW 435 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~--~~~~g~----~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 435 (701)
....++|++--..|.+......+ ... +...... ...... .......++.=++.+|++...++..|.++.
T Consensus 10 LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~ 88 (277)
T PF13226_consen 10 LLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWV 88 (277)
T ss_pred HHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 36788888888888887754332 222 1111111 111111 113566777778889999999998888765
Q ss_pred HcCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH
Q 040951 436 LAGDVPAARDILQEAYA-TIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNA 508 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~ 508 (701)
...- .+ +... .+-.+..-|.....+ .+.|...+.+++..+|. ...+..+..+....|.++
T Consensus 89 ~~Aw-----~~--RG~~~A~~V~~~~W~~~~~~------~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 89 HRAW-----DI--RGSGYASTVTEAQWLGAHQA------CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHH-----HH--HccchhcccCHHHHHHHHHH------HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 3210 00 0000 001123334332222 35566666666666666 444444444444445443
No 468
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=42.46 E-value=80 Score=20.95 Aligned_cols=26 Identities=23% Similarity=0.136 Sum_probs=11.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCh
Q 040951 415 KAVTYFPQAEVLWLMGAKEKWLAGDV 440 (701)
Q Consensus 415 ~al~~~p~~~~~~~~~a~~~~~~g~~ 440 (701)
.++-.+|.+...++.||..+...|+.
T Consensus 7 ~AI~~~P~ddt~RLvYADWL~e~gdp 32 (42)
T TIGR02996 7 RAILAHPDDDTPRLVYADWLDEHGDP 32 (42)
T ss_pred HHHHhCCCCcchHHHHHHHHHHcCCH
Confidence 33444444444444444444444444
No 469
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=42.45 E-value=68 Score=19.27 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=8.5
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEA 450 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a 450 (701)
...+.+.|+++.|..+|+.+
T Consensus 8 l~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 8 LRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33334444444444444443
No 470
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=42.09 E-value=96 Score=23.74 Aligned_cols=14 Identities=29% Similarity=0.093 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHCC
Q 040951 261 EARILLHRAVECCP 274 (701)
Q Consensus 261 ~A~~~l~~a~~~~P 274 (701)
.|..+..+|++++.
T Consensus 5 ~A~~~a~~AVe~D~ 18 (75)
T cd02682 5 MARKYAINAVKAEK 18 (75)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555555443
No 471
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=40.08 E-value=77 Score=21.04 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERA 477 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A 477 (701)
.|..++-.+|++...++.++..+.+.|+..+|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46677788888888888888888888888654
No 472
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.28 E-value=4.8e+02 Score=27.37 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC-------C-CCHHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRF-------P-SFFNL 527 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p-~~~~~ 527 (701)
++..++..|...|+++.|++.|.++..-..+ ...|+.+..+-...|++.....+..++.+.- + -.+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4557888999999999999999997776544 5677777788888888888777776665441 0 01234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGC 552 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al 552 (701)
...-|......+++..|...|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4445555556668888887776653
No 473
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.87 E-value=59 Score=24.85 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHhhhCC
Q 040951 145 DILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCP 183 (701)
Q Consensus 145 d~~~ar~ll~~i~~arl~~~~g~~~~A~~~~~~~~~~~P 183 (701)
|+++|..++++ |--+..+|++++|..++.++++.|-
T Consensus 2 ~l~kai~Lv~~---A~~eD~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 2 DLERAHFLVTQ---AFDEDEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred CHHHHHHHHHH---HHHhhHhhhHHHHHHHHHHHHHHHH
Confidence 45666666664 1224556889999999999987763
No 474
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.83 E-value=1.6e+02 Score=32.45 Aligned_cols=79 Identities=14% Similarity=0.043 Sum_probs=55.3
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
+....+.+....+.-+.-...+....+..+..+...+..++|-.+|++.+..+|+ ..++.+++-+.+ .|-...|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~ 94 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN---TGLAKDAQ 94 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh---hhhhhHHH
Confidence 4455566666666554444444556666677777778888888888888888877 567777777777 77777777
Q ss_pred HHHH
Q 040951 583 AVLS 586 (701)
Q Consensus 583 ~~~~ 586 (701)
.++.
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7776
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.74 E-value=3.2e+02 Score=25.20 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=15.1
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 463 AAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 463 ~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
..+-++.+.|.+++|.+++++...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc
Confidence 345556666666666666666665
No 476
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.47 E-value=1.4e+02 Score=32.98 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=61.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Q 040951 401 KTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML 480 (701)
Q Consensus 401 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 480 (701)
.+....+.+....+.-+..........+.-++.+...|..++|-.+|++.+..+|+ ..+..+++-+...|-...|..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34555666666666655444455566677778887888999999999999999987 6778888888899988888888
Q ss_pred HH
Q 040951 481 LA 482 (701)
Q Consensus 481 ~~ 482 (701)
+.
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 87
No 477
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.14 E-value=1.5e+02 Score=22.64 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhhcCHHHHHHHHHHHHHHCCCCHHH
Q 040951 230 ANKSRVLRMALDEIPDSVRLWKALVEISSEEEARILLHRAVECCPLDVEL 279 (701)
Q Consensus 230 ~~a~~~l~kal~~~P~~~~l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l 279 (701)
..|..++.+|++.+-..-. ...+. .|.+|+.+|.+++...|++...
T Consensus 4 ~~A~~~a~~AVe~D~~gr~--~eAi~--~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 4 EMARKYAINAVKAEKEGNA--EDAIT--NYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHHHHhcCCH--HHHHH--HHHHHHHHHHHHHHhCCChHHH
Confidence 3567777777776543210 00000 4556666666667777776543
No 478
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.82 E-value=3.5e+02 Score=25.35 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 040951 393 WLKAAQLEKTHGSRESLIALLRKAVTYFPQAE-VLWLMGAKEKWLAGDVPAARDILQEAYAT 453 (701)
Q Consensus 393 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~l~~a~~~ 453 (701)
...+...+...|+++.|.+.|.-.+...+-+. ..|-.-+.++...+......+.++.....
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~ 105 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF 105 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 34444555566677777666666665433232 24555555555554444433444444333
No 479
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=36.67 E-value=91 Score=23.15 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=14.4
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|++++|+..|..++..
T Consensus 16 D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHTTSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6678888888888777653
No 480
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.47 E-value=4e+02 Score=25.72 Aligned_cols=46 Identities=26% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhh-----hCCCCH---HHHHHHHHHH-hhhccCCCHHHHHHHHHHHHH
Q 040951 542 KEAKEAYQSGCN-----QCPNCI---PLWYSLANLE-EKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 542 ~~A~~~~~~al~-----~~p~~~---~~~~~la~~~-~~~~~~g~~~~A~~~~~~a~~ 590 (701)
+.|...|++|+. ..|.+| .+.++++.++ .- .|+.++|+.+.++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei---~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEI---LNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHH
Confidence 556666666654 345553 2344455554 34 7888888888777765
No 481
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.32 E-value=1.8e+02 Score=29.66 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC
Q 040951 441 PAARDILQEAYATIPNS---EEIWLAAFKLEFENRELERARMLLAKARDMGG 489 (701)
Q Consensus 441 ~~A~~~l~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p 489 (701)
++...+|...+...|+. ...|.-++.++...|.++..+.+|++|+....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Confidence 34555555555555542 23555666666666666666666666655443
No 482
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=35.80 E-value=3.8e+02 Score=28.60 Aligned_cols=99 Identities=13% Similarity=0.004 Sum_probs=64.3
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCCCHHHH
Q 040951 421 PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS----EEIWLAAFKLEFENRELERARMLLAKARD--MGGTERVW 494 (701)
Q Consensus 421 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~ 494 (701)
|-+..-.-.++.......+.+.+..++-+.... |++ +.....+++.+...|..+.++.++..=+. ++|+.-.+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 444433333444444555677777777765443 222 11234677888888888888888876554 56776667
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHh
Q 040951 495 MKSAIVERELGNNAEERGFIEEGLKR 520 (701)
Q Consensus 495 ~~~a~~~~~~g~~~~A~~~~~~al~~ 520 (701)
..+...+...|++..|.++...+...
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 77777778889998888887655443
No 483
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.96 E-value=1.4e+02 Score=26.11 Aligned_cols=46 Identities=22% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 427 WLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENR 472 (701)
Q Consensus 427 ~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~ 472 (701)
.+..++-....|++.-|..+++.++..+|++..+....+..+...|
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3344444556777777777777777777777777666666554443
No 484
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.51 E-value=3.7e+02 Score=24.76 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040951 372 IETARAIFSHACTVFLTKKS--------IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEK 434 (701)
Q Consensus 372 ~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 434 (701)
.+.|+.+++..-+-.|.... +-.....+++..|.+++|.+++++... +|++......+..+-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 46677777666555443211 222334566677777777777777766 666555544444443
No 485
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=34.34 E-value=1.9e+02 Score=27.57 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=81.0
Q ss_pred cccccCchhHHHhhhhhhccccccCCCcccCCCCcccccchhhhhhhhhhhhhhhcccccCCCCCccccChhhhHHhhhh
Q 040951 55 ESFVPVPDSLLQKARQEQQHVIALDPSSRAAGGAESVVTDLTAVGEGRGKILTLKLDGISDSVTGLTVVDLSGYLTRMND 134 (701)
Q Consensus 55 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ld~~~~~~~~~~~~~p~~~l~~~~~ 134 (701)
.+.||.|-.+|... .-..+..+++++.-| .-|.+.|+|-.+|-..+.+..... ...||+.|+.
T Consensus 59 ~~~~p~~~~~Lg~~--M~~~G~~lg~dS~~G-------~aL~~~G~A~~kla~~~~~~~~~v--------~~~fl~pL~~ 121 (223)
T cd07615 59 TTGYPQTEGLLGDC--MLRYGRELGEESTFG-------NALLDVGESMKQMAEVKDSLDINV--------KQNFIDPLQL 121 (223)
T ss_pred cCCCCCchhHHHHH--HHHHHhhCCCCChHH-------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 56788887887422 223333443322111 258889999999988887665321 2357777773
Q ss_pred cccccchhhhcHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhc-CcchHHHHHHHHHHhCC
Q 040951 135 LKITTNSELRDILKARKIVRAIQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLA-RPDEAKGVVAKGVRQIP 213 (701)
Q Consensus 135 ~~~~~~~~~~d~~~ar~ll~~i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~-~~~~A~~~l~~al~~~P 213 (701)
.. +.++..|.++|+.|+ ..||. ++.++.-.. .- ..+++--...+++ ..+.|.......+...|
T Consensus 122 ~l---~~dik~i~k~RKkLe---~rRLd-----~D~~K~r~~----k~-~~eE~~~A~~kfees~E~a~~~M~n~le~e~ 185 (223)
T cd07615 122 LQ---DKDLKEIGHHLKKLE---GRRLD-----FDYKKKRQG----KI-PDEEIRQAVEKFEESKELAERSMFNFLENDV 185 (223)
T ss_pred HH---HHHHHHHHHHHHHHH---HHHHH-----HHHHHHcCC----CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 21 355666667777666 45553 343333221 11 1333333333443 23456666666666667
Q ss_pred CcHHHHHHHHHcccCH-HHHHHHHHH
Q 040951 214 KSVRLWLQAAELDHDK-ANKSRVLRM 238 (701)
Q Consensus 214 ~~~~lw~~~~~le~~~-~~a~~~l~k 238 (701)
..+.-...++....++ ..+..+++.
T Consensus 186 e~~~~L~~lv~AQl~Yh~~a~eiL~~ 211 (223)
T cd07615 186 EQVSQLSVLIEAALDYHRQSTEILED 211 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666544422 234444443
No 486
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.98 E-value=5e+02 Score=25.80 Aligned_cols=101 Identities=9% Similarity=-0.088 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHH---HHHHHHHcCChHHHHHHHHHHHHhCCCCHH---H
Q 040951 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFP---QAEVLWLM---GAKEKWLAGDVPAARDILQEAYATIPNSEE---I 460 (701)
Q Consensus 390 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~---~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~---~ 460 (701)
.++|..+|+.|.+.++.+.+.+.+.+.+...- -..++.+. +|.++-.+.-.++.++.....++...+-.. .
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45888888888888888888877777665421 12233333 333333333355566666666666554211 2
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDMGGT 490 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~ 490 (701)
-...+.......++.+|-.++...+..+.+
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 223444555566777777777777765544
No 487
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.45 E-value=2.6e+02 Score=22.72 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
|-.+..++.+|...|+.+.|..-|+.--..+|.+
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3344444444444555555555554444444443
No 488
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=32.17 E-value=5.6e+02 Score=27.33 Aligned_cols=100 Identities=7% Similarity=-0.050 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHH
Q 040951 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA----EVLWLMGAKEKWLAGDVPAARDILQEAYAT--IPNSEE 459 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~--~p~~~~ 459 (701)
.|-+..-.-.++.......+.+.+..++-+.-. .|.. +.....+.+.+...|..+.++.++..=+.. +|++ .
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~-s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~-~ 139 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRH-SPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN-F 139 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHc-CcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh-h
Confidence 344443444445555555566777777766543 3322 233457778888999999999999765554 4764 4
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDM 487 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~ 487 (701)
....+...+...|++..|.++...+...
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 4556777888999999999999877753
No 489
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=31.76 E-value=97 Score=23.83 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=13.4
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|++++|+.+|..+++.
T Consensus 17 D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 17 DQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 5677777777777776643
No 490
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.35 E-value=5.7e+02 Score=25.95 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHH---HHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHH
Q 040951 458 EEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWM---KSAIVERELGNNAEERGFIEEGLKRFPSF---FNL 527 (701)
Q Consensus 458 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~---~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 527 (701)
.++++..+..|++.|+-+.|.+.+.+.....-. -++.+ .+|.++....-..+-++..+..++...+- -.+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 468999999999999999999998887764322 33333 33444443332333333333334433331 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
-...|..+....++.+|-.+|-..+..+..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 455566677888999999999888776544
No 491
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.51 E-value=1.3e+02 Score=23.08 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=15.5
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|+|++|+.+|..+++.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 6788889998888888764
No 492
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.22 E-value=6.1e+02 Score=25.64 Aligned_cols=95 Identities=16% Similarity=0.084 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC--C------CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH--hCCCC
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCP--N------CIPLWYSLANLEEKRNGLNGLSKARAVLSVARL--KNPLN 595 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~------~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 595 (701)
.+...++.+|.+.+++..|...+... ..+. . -...++.++++|.. .++..+|..+..++-- .+..|
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe---~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLE---DDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHhhhcccC
Confidence 35666777777777777777666543 2221 1 13356777777777 7777777777666532 23345
Q ss_pred HHHHHHH----HHHHHhcCCHHHHHHHHHHHHH
Q 040951 596 PEIWLAT----IRAESKHGNKKEADSFIAKALQ 624 (701)
Q Consensus 596 ~~~~~~l----~~~~~~~g~~~~A~~~~~~al~ 624 (701)
+.+...+ +++....+++-+|...|-+..+
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444433 3444445555555555544443
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=6e+02 Score=25.31 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHH---HHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHH
Q 040951 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPN---SEEIWL---AAFKLEFENRELERARMLLAKARDMGGT----ERV 493 (701)
Q Consensus 424 ~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~---~~~~~~---~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~ 493 (701)
.++|...|..|.+.+|.+.+.+.+.+.+...-. ..++.+ .++.+|....-.++.++.....++...+ .+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 578999999999999999999888877765421 234444 3555555555556666666777776666 223
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
-...|.+.....++.+|-.++-..+..+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 3334666677788999999998888777653
No 494
>COG1659 Uncharacterized protein, linocin/CFP29 homolog [Function unknown]
Probab=28.60 E-value=23 Score=32.65 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.6
Q ss_pred hhhhccCCCHHHhccCc
Q 040951 24 LKGKLTTVKAKEWERIP 40 (701)
Q Consensus 24 ~k~~l~~~~~~~w~~~p 40 (701)
|||+++-+|+++|.-|-
T Consensus 4 L~Rd~APLTe~~W~eID 20 (267)
T COG1659 4 LYRDLAPLTEAAWAEID 20 (267)
T ss_pred hhhccccccHHHHHHHH
Confidence 89999999999999873
No 495
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.48 E-value=3.6e+02 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=22.1
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 040951 217 RLWLQAAELDHDKANKSRVLRMALDEIPDSVRLWKA 252 (701)
Q Consensus 217 ~lw~~~~~le~~~~~a~~~l~kal~~~P~~~~l~~~ 252 (701)
.+|..+.....+.+...++++..+++.|..-+.|..
T Consensus 143 ~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 143 KLWEKLLSPPSSQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 355555555556666666667777777766666654
No 496
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=28.36 E-value=2.4e+02 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=12.6
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|+|++|..+|..+++.
T Consensus 17 d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 4556777777777776654
No 497
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=28.32 E-value=1.1e+02 Score=23.29 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=13.5
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|++++|+.+|..+++.
T Consensus 17 D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 17 DQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 5567777777777777654
No 498
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=27.74 E-value=7.3e+02 Score=25.99 Aligned_cols=51 Identities=16% Similarity=-0.063 Sum_probs=29.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHH--HHHHHHcCChHHHHHHHHH
Q 040951 399 LEKTHGSRESLIALLRKAVTYFPQA-----EVLWLMG--AKEKWLAGDVPAARDILQE 449 (701)
Q Consensus 399 ~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~--a~~~~~~g~~~~A~~~l~~ 449 (701)
...+.+++..|...|..++...+.. ...+..+ +..+|..-++++|.+.+++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4455666666666666666554321 1222333 3344567777788777775
No 499
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=27.26 E-value=24 Score=25.96 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=21.5
Q ss_pred hhhhhhhhhhhccCCCHHHhccCcccccchhh
Q 040951 17 IREEFVDLKGKLTTVKAKEWERIPEIGDYSRS 48 (701)
Q Consensus 17 ~~~~f~~~k~~l~~~~~~~w~~~p~~~~~~~~ 48 (701)
+.+.|.+|. .|.+-|.||..+||.+|.-+-.
T Consensus 19 L~~~f~sl~-~l~~a~~e~L~~i~gIG~~~A~ 49 (64)
T PF12826_consen 19 LAKHFGSLE-ALMNASVEELSAIPGIGPKIAQ 49 (64)
T ss_dssp HHHCCSCHH-HHCC--HHHHCTSTT--HHHHH
T ss_pred HHHHcCCHH-HHHHcCHHHHhccCCcCHHHHH
Confidence 457788884 5788899999999999987654
No 500
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=26.95 E-value=4e+02 Score=22.76 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCc
Q 040951 278 ELWLALARLETYGVARSVLNKARKKLPKE----------------RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEE 341 (701)
Q Consensus 278 ~l~~~l~~l~~~~~A~~~l~~a~~~~p~~----------------~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~ 341 (701)
.+..++++.|+.+....++++.-..+++. ..+..+.+..+...|++..|.++++...+..+
T Consensus 7 ~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~--- 83 (126)
T PF12921_consen 7 NIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP--- 83 (126)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC---
Q ss_pred ccCCHHHHHHHHHHH
Q 040951 342 VVIDRDTWMKEAEIA 356 (701)
Q Consensus 342 ~~~~~~~w~~~a~~~ 356 (701)
..+....|..+-+++
T Consensus 84 I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 84 IPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHH
Done!