Query 040951
Match_columns 701
No_of_seqs 980 out of 4221
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 21:53:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-38 8.4E-43 335.3 47.9 367 284-698 10-377 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-37 5.8E-42 328.8 50.9 376 252-675 8-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1.9E-37 6.5E-42 348.0 48.1 477 166-699 67-589 (597)
4 2xpi_A Anaphase-promoting comp 100.0 5.2E-36 1.8E-40 336.3 46.3 456 158-637 90-591 (597)
5 2ooe_A Cleavage stimulation fa 100.0 3.4E-35 1.2E-39 324.4 44.7 417 205-629 2-496 (530)
6 2ooe_A Cleavage stimulation fa 100.0 1.2E-32 4.1E-37 304.0 46.2 425 235-693 1-496 (530)
7 2gw1_A Mitochondrial precursor 100.0 4.9E-33 1.7E-37 305.7 40.3 408 252-699 15-488 (514)
8 3fp2_A TPR repeat-containing p 100.0 2.9E-32 1E-36 301.5 38.7 391 253-696 35-498 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 1.4E-31 4.7E-36 289.2 42.6 329 291-637 10-370 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 3E-31 1E-35 286.4 44.0 351 260-628 9-413 (450)
11 4e6h_A MRNA 3'-END-processing 100.0 2.4E-31 8.3E-36 294.7 42.8 423 169-631 49-576 (679)
12 2gw1_A Mitochondrial precursor 100.0 2.5E-31 8.7E-36 292.0 41.2 408 217-636 7-489 (514)
13 3fp2_A TPR repeat-containing p 100.0 1.7E-31 5.9E-36 295.3 39.0 430 159-634 32-500 (537)
14 3ieg_A DNAJ homolog subfamily 100.0 1.2E-30 4.2E-35 272.0 42.4 311 346-699 3-345 (359)
15 3ieg_A DNAJ homolog subfamily 100.0 1.9E-29 6.4E-34 263.0 44.6 312 306-635 2-345 (359)
16 4e6h_A MRNA 3'-END-processing 100.0 5.2E-29 1.8E-33 276.1 45.8 416 156-598 70-577 (679)
17 4g1t_A Interferon-induced prot 100.0 1.4E-29 4.7E-34 275.4 39.2 375 307-700 51-470 (472)
18 3hym_B Cell division cycle pro 100.0 1.3E-28 4.4E-33 253.6 32.3 286 381-699 13-309 (330)
19 3hym_B Cell division cycle pro 100.0 1.1E-27 3.9E-32 246.5 34.4 296 298-611 13-320 (330)
20 1fch_A Peroxisomal targeting s 100.0 4.9E-28 1.7E-32 253.7 27.1 301 367-690 36-360 (368)
21 1fch_A Peroxisomal targeting s 100.0 1.4E-27 4.7E-32 250.3 27.3 295 317-626 35-360 (368)
22 4g1t_A Interferon-induced prot 100.0 1.6E-26 5.4E-31 251.2 35.6 363 285-668 63-472 (472)
23 4eqf_A PEX5-related protein; a 100.0 2.8E-27 9.6E-32 247.9 23.6 292 377-689 48-356 (365)
24 4eqf_A PEX5-related protein; a 99.9 1.2E-26 4E-31 243.2 24.9 266 346-624 65-355 (365)
25 3cv0_A Peroxisome targeting si 99.9 8.1E-26 2.8E-30 232.3 27.4 282 391-693 22-319 (327)
26 3cv0_A Peroxisome targeting si 99.9 2.1E-25 7.3E-30 229.2 28.5 269 347-628 22-318 (327)
27 2xm6_A Protein corresponding t 99.9 1.5E-22 5.2E-27 220.8 52.0 344 287-697 57-443 (490)
28 2h6f_A Protein farnesyltransfe 99.9 1.7E-25 5.7E-30 233.3 23.5 250 417-700 90-359 (382)
29 2ond_A Cleavage stimulation fa 99.9 1E-24 3.5E-29 222.5 26.7 271 387-668 5-305 (308)
30 2h6f_A Protein farnesyltransfe 99.9 8.7E-25 3E-29 227.9 25.7 252 382-637 89-360 (382)
31 3u4t_A TPR repeat-containing p 99.9 8.7E-24 3E-28 211.3 26.4 251 424-699 3-260 (272)
32 2uy1_A Cleavage stimulation fa 99.9 1.3E-22 4.6E-27 219.0 36.6 374 161-625 3-413 (493)
33 2xm6_A Protein corresponding t 99.9 1.3E-20 4.3E-25 205.6 51.4 338 257-628 57-435 (490)
34 2uy1_A Cleavage stimulation fa 99.9 6.3E-22 2.2E-26 213.8 38.7 372 140-590 4-412 (493)
35 2ond_A Cleavage stimulation fa 99.9 4.6E-23 1.6E-27 210.3 27.1 272 346-638 8-305 (308)
36 3uq3_A Heat shock protein STI1 99.9 1.1E-22 3.8E-27 201.1 28.1 227 389-626 4-237 (258)
37 3mkr_A Coatomer subunit epsilo 99.9 1.7E-22 5.6E-27 203.8 29.5 256 365-631 8-270 (291)
38 3u4t_A TPR repeat-containing p 99.9 7.2E-23 2.4E-27 204.6 25.3 237 367-607 14-266 (272)
39 3mkr_A Coatomer subunit epsilo 99.9 1.6E-22 5.6E-27 203.8 28.0 258 398-696 7-271 (291)
40 2pl2_A Hypothetical conserved 99.9 7.7E-23 2.6E-27 197.0 24.4 210 387-622 2-211 (217)
41 2pl2_A Hypothetical conserved 99.9 1.1E-22 3.6E-27 196.0 25.1 191 362-552 11-212 (217)
42 3uq3_A Heat shock protein STI1 99.9 4.8E-22 1.7E-26 196.5 29.3 229 365-605 14-256 (258)
43 3sf4_A G-protein-signaling mod 99.9 5.4E-22 1.9E-26 210.3 21.8 285 365-676 18-363 (406)
44 2q7f_A YRRB protein; TPR, prot 99.9 2.7E-21 9.3E-26 189.3 24.0 214 391-607 24-238 (243)
45 4a1s_A PINS, partner of inscut 99.9 5.9E-22 2E-26 210.9 20.4 280 389-695 47-378 (411)
46 3sf4_A G-protein-signaling mod 99.9 1.6E-21 5.4E-26 206.7 23.2 282 387-695 6-342 (406)
47 3ro2_A PINS homolog, G-protein 99.9 1E-21 3.4E-26 202.1 21.0 278 391-695 6-338 (338)
48 2vq2_A PILW, putative fimbrial 99.9 4.8E-20 1.6E-24 177.9 30.6 214 385-601 3-221 (225)
49 2q7f_A YRRB protein; TPR, prot 99.9 6.6E-21 2.3E-25 186.6 24.4 215 423-640 22-237 (243)
50 2ho1_A Type 4 fimbrial biogene 99.9 2.8E-20 9.7E-25 183.4 28.9 213 385-600 31-247 (252)
51 1xi4_A Clathrin heavy chain; a 99.9 2.8E-18 9.4E-23 195.3 48.2 321 249-622 1055-1381(1630)
52 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-20 3.6E-25 176.8 23.5 175 490-697 4-178 (184)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.6E-21 1.6E-25 191.6 22.1 245 367-619 16-269 (275)
54 2ho1_A Type 4 fimbrial biogene 99.9 3.9E-20 1.3E-24 182.3 28.2 213 419-634 31-247 (252)
55 1xi4_A Clathrin heavy chain; a 99.9 2E-17 6.7E-22 188.3 53.4 338 228-620 1064-1440(1630)
56 2vq2_A PILW, putative fimbrial 99.9 7.5E-20 2.6E-24 176.5 29.3 213 419-634 3-220 (225)
57 4a1s_A PINS, partner of inscut 99.9 3.3E-21 1.1E-25 205.0 21.2 264 364-630 56-377 (411)
58 3ro2_A PINS homolog, G-protein 99.9 5.3E-21 1.8E-25 196.6 21.5 262 365-629 14-336 (338)
59 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.8E-20 6E-25 187.3 22.3 245 401-683 16-269 (275)
60 3e4b_A ALGK; tetratricopeptide 99.9 5.6E-20 1.9E-24 197.6 27.0 306 284-624 14-350 (452)
61 3vtx_A MAMA; tetratricopeptide 99.9 7.9E-20 2.7E-24 170.9 24.2 168 424-594 5-173 (184)
62 1ouv_A Conserved hypothetical 99.9 4.6E-19 1.6E-23 177.1 31.2 236 421-697 3-259 (273)
63 4abn_A Tetratricopeptide repea 99.9 3.9E-20 1.3E-24 200.1 23.1 213 406-621 84-317 (474)
64 1ouv_A Conserved hypothetical 99.8 5E-18 1.7E-22 169.6 33.4 239 386-635 2-261 (273)
65 4abn_A Tetratricopeptide repea 99.8 1.1E-19 3.8E-24 196.5 22.8 216 369-588 81-318 (474)
66 3e4b_A ALGK; tetratricopeptide 99.8 3E-18 1E-22 184.1 29.3 365 228-626 18-422 (452)
67 4i17_A Hypothetical protein; T 99.8 4.8E-18 1.6E-22 164.7 27.8 210 387-606 4-224 (228)
68 3ulq_A Response regulator aspa 99.8 1.1E-18 3.9E-23 183.7 22.8 232 393-628 106-371 (383)
69 4i17_A Hypothetical protein; T 99.8 1E-17 3.5E-22 162.4 27.8 205 421-635 4-219 (228)
70 3ulq_A Response regulator aspa 99.8 3.8E-18 1.3E-22 179.6 23.1 226 364-593 111-370 (383)
71 3nf1_A KLC 1, kinesin light ch 99.8 3.3E-19 1.1E-23 181.3 14.3 240 386-628 23-310 (311)
72 4gyw_A UDP-N-acetylglucosamine 99.8 2.8E-18 9.5E-23 192.7 21.5 171 454-627 5-176 (723)
73 3nf1_A KLC 1, kinesin light ch 99.8 4E-19 1.4E-23 180.7 13.2 246 420-692 23-310 (311)
74 4gyw_A UDP-N-acetylglucosamine 99.8 4.1E-18 1.4E-22 191.3 21.7 174 419-595 4-178 (723)
75 3dra_A Protein farnesyltransfe 99.8 1.1E-16 3.9E-21 159.9 27.9 235 367-604 43-301 (306)
76 3dra_A Protein farnesyltransfe 99.8 2.4E-16 8.1E-21 157.6 28.3 231 405-638 48-301 (306)
77 3qky_A Outer membrane assembly 99.8 2.4E-17 8.2E-22 163.4 20.9 209 384-612 9-248 (261)
78 1hz4_A MALT regulatory protein 99.8 1.8E-16 6E-21 166.1 28.2 263 362-627 20-324 (373)
79 3as5_A MAMA; tetratricopeptide 99.8 7E-17 2.4E-21 150.2 22.1 173 491-696 8-180 (186)
80 3qky_A Outer membrane assembly 99.8 6.7E-17 2.3E-21 160.2 22.4 194 362-571 21-244 (261)
81 1b89_A Protein (clathrin heavy 99.8 2.9E-18 9.9E-23 176.4 12.0 350 285-687 15-383 (449)
82 3q15_A PSP28, response regulat 99.7 2.3E-16 7.9E-21 165.6 25.6 231 392-626 103-366 (378)
83 2pzi_A Probable serine/threoni 99.7 6.8E-17 2.3E-21 182.5 23.0 187 384-577 388-583 (681)
84 1hz4_A MALT regulatory protein 99.7 3.7E-16 1.3E-20 163.6 27.1 272 391-689 15-322 (373)
85 1qqe_A Vesicular transport pro 99.7 1.5E-17 5.1E-22 167.8 13.9 204 466-697 45-277 (292)
86 3as5_A MAMA; tetratricopeptide 99.7 3E-16 1E-20 145.8 21.6 168 459-629 9-177 (186)
87 2pzi_A Probable serine/threoni 99.7 4.3E-17 1.5E-21 184.2 17.8 187 418-611 388-583 (681)
88 3urz_A Uncharacterized protein 99.7 6.5E-17 2.2E-21 154.2 16.2 165 494-692 7-189 (208)
89 1qqe_A Vesicular transport pro 99.7 7.8E-17 2.7E-21 162.6 16.7 237 375-632 4-276 (292)
90 3q15_A PSP28, response regulat 99.7 9E-16 3.1E-20 161.1 25.5 225 364-592 109-366 (378)
91 4ga2_A E3 SUMO-protein ligase 99.7 3E-17 1E-21 147.5 11.9 145 464-611 3-149 (150)
92 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4E-21 164.5 16.9 373 256-683 16-411 (449)
93 3urz_A Uncharacterized protein 99.7 4.1E-16 1.4E-20 148.7 19.2 168 366-534 14-199 (208)
94 4ga2_A E3 SUMO-protein ligase 99.7 4.5E-17 1.5E-21 146.3 10.9 131 497-630 3-134 (150)
95 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.1E-15 7.1E-20 145.7 22.0 193 457-696 3-220 (225)
96 3edt_B KLC 2, kinesin light ch 99.7 2.6E-16 9E-21 157.2 15.0 226 367-625 12-281 (283)
97 3edt_B KLC 2, kinesin light ch 99.7 4.4E-16 1.5E-20 155.5 16.4 192 362-553 49-280 (283)
98 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.2E-15 1.1E-19 144.4 21.7 187 423-629 3-217 (225)
99 3dss_A Geranylgeranyl transfer 99.7 3.6E-14 1.2E-18 142.4 29.7 234 367-600 40-313 (331)
100 3dss_A Geranylgeranyl transfer 99.7 4.9E-14 1.7E-18 141.4 29.7 231 401-634 40-313 (331)
101 3q7a_A Farnesyltransferase alp 99.6 7.9E-14 2.7E-18 140.4 26.9 174 367-540 65-257 (349)
102 3qou_A Protein YBBN; thioredox 99.6 1.2E-14 4.2E-19 145.9 20.9 167 421-590 114-283 (287)
103 3q7a_A Farnesyltransferase alp 99.6 3.6E-14 1.2E-18 142.9 24.1 243 392-637 56-344 (349)
104 2vsy_A XCC0866; transferase, g 99.6 9.2E-15 3.1E-19 162.2 20.9 154 472-628 3-160 (568)
105 2r5s_A Uncharacterized protein 99.6 2.9E-15 1E-19 138.5 14.1 77 510-589 93-171 (176)
106 2r5s_A Uncharacterized protein 99.6 2.9E-15 9.8E-20 138.6 13.1 167 455-625 3-173 (176)
107 3qou_A Protein YBBN; thioredox 99.6 1.8E-14 6.3E-19 144.6 19.6 170 384-553 111-283 (287)
108 4gco_A Protein STI-1; structur 99.6 1.6E-14 5.5E-19 125.1 15.5 116 487-605 8-124 (126)
109 2vsy_A XCC0866; transferase, g 99.6 3.9E-14 1.3E-18 157.2 22.3 164 437-603 2-169 (568)
110 3gyz_A Chaperone protein IPGC; 99.6 3.7E-15 1.3E-19 133.1 9.7 112 514-628 25-136 (151)
111 4gco_A Protein STI-1; structur 99.6 3.9E-14 1.3E-18 122.7 15.4 117 516-635 4-120 (126)
112 3gyz_A Chaperone protein IPGC; 99.6 4.2E-15 1.4E-19 132.8 9.0 117 477-596 21-138 (151)
113 2ifu_A Gamma-SNAP; membrane fu 99.6 6.9E-14 2.4E-18 142.0 18.5 158 467-629 45-227 (307)
114 2fo7_A Synthetic consensus TPR 99.6 4.2E-13 1.4E-17 117.0 20.5 134 492-628 2-135 (136)
115 4f3v_A ESX-1 secretion system 99.6 2.8E-14 9.6E-19 139.0 13.8 201 436-641 18-252 (282)
116 2ifu_A Gamma-SNAP; membrane fu 99.5 8.5E-14 2.9E-18 141.3 17.6 221 368-617 3-253 (307)
117 4f3v_A ESX-1 secretion system 99.5 3.4E-14 1.2E-18 138.4 13.1 218 369-605 19-250 (282)
118 2fo7_A Synthetic consensus TPR 99.5 6.4E-13 2.2E-17 115.8 19.9 135 526-693 2-136 (136)
119 2vgx_A Chaperone SYCD; alterna 99.5 5.2E-14 1.8E-18 125.8 11.6 115 512-629 8-122 (148)
120 2vgx_A Chaperone SYCD; alterna 99.5 7.7E-14 2.6E-18 124.7 11.2 121 477-600 6-127 (148)
121 2c2l_A CHIP, carboxy terminus 99.5 1E-13 3.5E-18 138.6 12.7 198 455-690 1-200 (281)
122 1p5q_A FKBP52, FK506-binding p 99.5 7.7E-15 2.6E-19 150.8 3.9 153 471-626 126-295 (336)
123 2c2l_A CHIP, carboxy terminus 99.5 1.6E-13 5.4E-18 137.2 12.7 191 387-590 1-198 (281)
124 2xcb_A PCRH, regulatory protei 99.5 2.1E-13 7.2E-18 121.0 11.6 114 512-628 5-118 (142)
125 3rjv_A Putative SEL1 repeat pr 99.5 5.6E-12 1.9E-16 120.1 22.2 154 375-536 5-173 (212)
126 3rjv_A Putative SEL1 repeat pr 99.5 4.3E-12 1.5E-16 120.9 20.1 179 408-593 4-199 (212)
127 3mv2_B Coatomer subunit epsilo 99.4 8.7E-12 3E-16 123.0 22.1 245 367-633 24-290 (310)
128 1p5q_A FKBP52, FK506-binding p 99.4 2.1E-13 7.3E-18 140.0 11.1 154 503-689 125-294 (336)
129 2xcb_A PCRH, regulatory protei 99.4 4.1E-13 1.4E-17 119.0 11.3 121 479-602 5-126 (142)
130 2e2e_A Formate-dependent nitri 99.4 1.2E-12 4.2E-17 120.8 14.2 126 502-630 21-149 (177)
131 2e2e_A Formate-dependent nitri 99.4 1.3E-12 4.4E-17 120.7 14.2 129 536-697 21-152 (177)
132 1a17_A Serine/threonine protei 99.4 7.4E-12 2.5E-16 113.8 18.6 133 491-626 13-147 (166)
133 3mv2_B Coatomer subunit epsilo 99.4 6.9E-11 2.4E-15 116.6 26.2 183 409-599 85-290 (310)
134 3upv_A Heat shock protein STI1 99.4 5E-12 1.7E-16 109.3 15.9 114 491-607 4-123 (126)
135 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1E-11 3.6E-16 118.2 18.5 150 526-695 7-156 (213)
136 1dce_A Protein (RAB geranylger 99.4 1.2E-12 4.1E-17 143.4 12.9 187 371-557 44-270 (567)
137 2fbn_A 70 kDa peptidylprolyl i 99.4 6.9E-13 2.4E-17 125.1 9.4 152 469-623 15-184 (198)
138 1a17_A Serine/threonine protei 99.4 1.9E-11 6.6E-16 111.0 18.6 133 525-690 13-147 (166)
139 2vyi_A SGTA protein; chaperone 99.4 1.6E-11 5.6E-16 106.1 16.9 119 491-612 12-130 (131)
140 2lni_A Stress-induced-phosphop 99.4 1.1E-11 3.8E-16 107.8 15.6 118 491-611 16-133 (133)
141 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.8E-11 6.1E-16 116.6 18.3 130 461-595 9-154 (213)
142 3upv_A Heat shock protein STI1 99.4 1E-11 3.6E-16 107.3 14.6 102 522-626 1-102 (126)
143 2qfc_A PLCR protein; TPR, HTH, 99.4 5.4E-11 1.8E-15 119.7 21.9 172 493-691 77-268 (293)
144 1dce_A Protein (RAB geranylger 99.4 3.8E-11 1.3E-15 131.5 21.9 189 440-628 45-270 (567)
145 2fbn_A 70 kDa peptidylprolyl i 99.4 1.5E-12 5E-17 122.8 9.2 162 401-582 15-176 (198)
146 2lni_A Stress-induced-phosphop 99.3 2.4E-11 8.2E-16 105.6 16.1 106 521-629 12-117 (133)
147 1elw_A TPR1-domain of HOP; HOP 99.3 5E-11 1.7E-15 101.0 17.2 113 491-606 4-116 (118)
148 1na0_A Designed protein CTPR3; 99.3 6E-11 2.1E-15 101.6 17.7 117 491-610 9-125 (125)
149 3sz7_A HSC70 cochaperone (SGT) 99.3 2.1E-11 7.3E-16 110.9 15.3 111 491-604 11-121 (164)
150 2vyi_A SGTA protein; chaperone 99.3 3.1E-11 1E-15 104.4 15.6 115 425-539 13-128 (131)
151 2qfc_A PLCR protein; TPR, HTH, 99.3 1E-10 3.4E-15 117.7 21.3 161 463-626 80-267 (293)
152 3sz7_A HSC70 cochaperone (SGT) 99.3 2.1E-11 7.1E-16 110.9 14.5 111 522-635 8-118 (164)
153 1hxi_A PEX5, peroxisome target 99.3 1.6E-11 5.4E-16 105.3 11.9 97 529-628 21-117 (121)
154 1hxi_A PEX5, peroxisome target 99.3 1.8E-11 6.3E-16 104.9 12.1 103 492-597 18-120 (121)
155 1na0_A Designed protein CTPR3; 99.3 1.5E-10 5.2E-15 99.0 17.8 110 426-535 11-121 (125)
156 3gw4_A Uncharacterized protein 99.3 2.3E-11 7.9E-16 114.6 13.4 167 503-696 4-183 (203)
157 3q49_B STIP1 homology and U bo 99.3 4.6E-11 1.6E-15 104.7 14.5 112 491-605 9-125 (137)
158 4gcn_A Protein STI-1; structur 99.3 7.6E-11 2.6E-15 102.0 15.2 99 492-593 9-114 (127)
159 3q49_B STIP1 homology and U bo 99.3 7.2E-11 2.5E-15 103.4 15.0 107 519-628 3-109 (137)
160 3u3w_A Transcriptional activat 99.3 8.8E-11 3E-15 118.1 17.6 167 498-691 82-268 (293)
161 1elw_A TPR1-domain of HOP; HOP 99.3 1.9E-10 6.4E-15 97.3 16.6 111 459-569 5-116 (118)
162 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 6.3E-12 2.1E-16 134.8 8.1 159 436-616 246-405 (457)
163 2xev_A YBGF; tetratricopeptide 99.2 1.6E-10 5.3E-15 100.1 15.6 110 494-606 5-120 (129)
164 2dba_A Smooth muscle cell asso 99.2 1.8E-10 6.3E-15 102.1 15.9 111 492-605 29-142 (148)
165 3u3w_A Transcriptional activat 99.2 2.3E-10 8E-15 114.9 18.5 157 397-553 82-265 (293)
166 2kck_A TPR repeat; tetratricop 99.2 5.1E-11 1.7E-15 99.9 11.4 106 521-629 2-110 (112)
167 2dba_A Smooth muscle cell asso 99.2 3.5E-10 1.2E-14 100.3 17.2 118 454-571 24-145 (148)
168 4gcn_A Protein STI-1; structur 99.2 1.3E-10 4.4E-15 100.5 13.9 65 392-456 10-74 (127)
169 3rkv_A Putative peptidylprolyl 99.2 7.2E-11 2.5E-15 107.1 12.8 115 491-608 11-144 (162)
170 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1E-11 3.5E-16 133.1 8.3 144 505-681 248-406 (457)
171 2kck_A TPR repeat; tetratricop 99.2 1.3E-10 4.6E-15 97.3 12.0 109 555-694 2-111 (112)
172 2xev_A YBGF; tetratricopeptide 99.2 8.1E-10 2.8E-14 95.5 16.6 111 461-571 5-122 (129)
173 2if4_A ATFKBP42; FKBP-like, al 99.2 3.4E-11 1.2E-15 123.6 9.1 154 457-629 178-332 (338)
174 1elr_A TPR2A-domain of HOP; HO 99.2 2.5E-10 8.7E-15 98.6 13.3 114 491-608 4-124 (131)
175 1zu2_A Mitochondrial import re 99.2 7.5E-11 2.6E-15 103.5 9.7 120 504-667 15-145 (158)
176 2hr2_A Hypothetical protein; a 99.2 1.8E-10 6E-15 101.4 12.0 100 528-630 14-136 (159)
177 3gw4_A Uncharacterized protein 99.2 2.6E-10 9E-15 107.3 14.0 155 470-627 4-178 (203)
178 2hr2_A Hypothetical protein; a 99.2 2E-10 6.8E-15 101.1 11.9 109 491-602 11-142 (159)
179 1wao_1 Serine/threonine protei 99.2 8.7E-12 3E-16 134.2 4.0 138 527-697 8-158 (477)
180 3rkv_A Putative peptidylprolyl 99.2 5.6E-10 1.9E-14 101.1 15.0 84 488-571 59-144 (162)
181 1elr_A TPR2A-domain of HOP; HO 99.1 5.4E-10 1.8E-14 96.5 13.4 110 390-499 4-120 (131)
182 2if4_A ATFKBP42; FKBP-like, al 99.1 5.5E-11 1.9E-15 122.0 8.0 165 414-597 169-334 (338)
183 3k9i_A BH0479 protein; putativ 99.1 1.1E-10 3.7E-15 99.3 7.5 93 504-599 3-98 (117)
184 4b4t_Q 26S proteasome regulato 99.1 8.6E-10 3E-14 117.5 16.2 162 461-625 58-245 (434)
185 1wao_1 Serine/threonine protei 99.1 2.2E-11 7.5E-16 131.1 3.7 124 494-620 9-134 (477)
186 1zu2_A Mitochondrial import re 99.1 2.1E-10 7.2E-15 100.7 9.1 101 470-596 14-125 (158)
187 3ro3_A PINS homolog, G-protein 99.1 6.5E-10 2.2E-14 99.9 12.6 142 526-694 10-163 (164)
188 1ihg_A Cyclophilin 40; ppiase 99.1 8.2E-10 2.8E-14 114.5 14.9 139 459-617 224-362 (370)
189 3k9i_A BH0479 protein; putativ 99.1 2E-10 6.8E-15 97.7 7.8 95 368-462 2-99 (117)
190 4b4t_Q 26S proteasome regulato 99.1 1.9E-09 6.6E-14 114.8 17.3 162 427-591 58-245 (434)
191 3ro3_A PINS homolog, G-protein 99.0 2.6E-09 8.9E-14 95.9 12.7 134 492-628 10-161 (164)
192 1ihg_A Cyclophilin 40; ppiase 99.0 3E-09 1E-13 110.2 14.8 140 423-583 222-362 (370)
193 2kat_A Uncharacterized protein 98.9 1.1E-08 3.6E-13 86.5 10.7 83 509-594 3-85 (115)
194 1na3_A Designed protein CTPR2; 98.8 3.7E-08 1.3E-12 78.7 11.7 83 524-609 8-90 (91)
195 2kat_A Uncharacterized protein 98.8 5E-08 1.7E-12 82.2 13.0 83 374-456 3-85 (115)
196 4h7y_A Dual specificity protei 98.8 7.6E-08 2.6E-12 81.3 12.7 114 520-637 8-135 (161)
197 2l6j_A TPR repeat-containing p 98.8 4.2E-09 1.5E-13 88.0 4.8 79 493-571 6-90 (111)
198 2l6j_A TPR repeat-containing p 98.8 4.3E-09 1.5E-13 88.0 4.4 94 524-620 3-102 (111)
199 3u64_A Protein TP_0956; tetrat 98.8 4.5E-07 1.5E-11 87.0 18.5 106 520-628 147-272 (301)
200 1na3_A Designed protein CTPR2; 98.7 1.1E-07 3.9E-12 75.8 12.0 84 388-471 7-90 (91)
201 3ma5_A Tetratricopeptide repea 98.7 2.9E-08 9.8E-13 81.4 7.7 71 554-627 2-72 (100)
202 3ma5_A Tetratricopeptide repea 98.7 1.3E-07 4.3E-12 77.5 10.3 71 520-593 2-72 (100)
203 4h7y_A Dual specificity protei 98.7 4.8E-07 1.6E-11 76.5 13.6 69 492-561 62-130 (161)
204 2kc7_A BFR218_protein; tetratr 98.6 5.3E-08 1.8E-12 79.5 6.9 88 530-628 5-93 (99)
205 3u64_A Protein TP_0956; tetrat 98.6 5.5E-07 1.9E-11 86.4 14.3 86 507-595 179-273 (301)
206 1klx_A Cysteine rich protein B 98.6 1.4E-06 4.7E-11 76.1 14.9 111 539-690 9-127 (138)
207 2kc7_A BFR218_protein; tetratr 98.6 1.4E-07 4.7E-12 76.9 7.7 92 563-695 4-96 (99)
208 3ly7_A Transcriptional activat 98.5 6.4E-06 2.2E-10 82.7 19.0 129 507-639 215-354 (372)
209 3ly7_A Transcriptional activat 98.5 9.9E-06 3.4E-10 81.3 20.3 71 488-559 273-344 (372)
210 4g26_A Pentatricopeptide repea 98.5 3.8E-05 1.3E-09 82.5 25.7 161 428-591 30-204 (501)
211 1klx_A Cysteine rich protein B 98.4 4.6E-06 1.6E-10 72.7 15.0 108 440-554 11-126 (138)
212 4g26_A Pentatricopeptide repea 98.4 2E-05 6.7E-10 84.7 23.0 161 392-553 28-203 (501)
213 3n71_A Histone lysine methyltr 98.4 3.7E-06 1.3E-10 89.6 14.6 123 501-626 319-465 (490)
214 3bee_A Putative YFRE protein; 98.4 2.5E-06 8.7E-11 68.2 10.1 69 556-627 3-74 (93)
215 3n71_A Histone lysine methyltr 98.3 3.1E-06 1.1E-10 90.2 11.5 121 366-486 319-463 (490)
216 3bee_A Putative YFRE protein; 98.2 6.7E-06 2.3E-10 65.7 9.8 71 386-456 2-75 (93)
217 1pc2_A Mitochondria fission pr 98.1 5.6E-05 1.9E-09 65.4 13.1 94 440-533 14-113 (152)
218 1pc2_A Mitochondria fission pr 98.0 4.5E-05 1.5E-09 66.0 11.9 87 509-598 16-107 (152)
219 2v5f_A Prolyl 4-hydroxylase su 97.9 0.00018 6.2E-09 58.8 11.8 75 526-603 6-87 (104)
220 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00019 6.5E-09 58.7 11.8 75 492-566 6-87 (104)
221 3qww_A SET and MYND domain-con 97.8 0.00017 5.7E-09 75.6 12.8 88 575-689 311-411 (433)
222 3qww_A SET and MYND domain-con 97.6 0.00028 9.5E-09 73.9 11.0 95 367-461 309-424 (433)
223 3qwp_A SET and MYND domain-con 97.4 0.00062 2.1E-08 71.4 11.5 95 367-461 298-413 (429)
224 3qwp_A SET and MYND domain-con 97.4 0.0018 6.2E-08 67.8 14.8 84 470-553 299-399 (429)
225 1nzn_A CGI-135 protein, fissio 97.4 0.0027 9.1E-08 52.8 12.3 93 440-532 17-115 (126)
226 1nzn_A CGI-135 protein, fissio 97.2 0.0041 1.4E-07 51.7 11.8 86 510-598 20-110 (126)
227 3ffl_A Anaphase-promoting comp 97.0 0.004 1.4E-07 54.1 10.0 58 396-453 26-92 (167)
228 3txn_A 26S proteasome regulato 97.0 0.17 5.7E-06 51.6 23.5 93 429-521 104-211 (394)
229 3txn_A 26S proteasome regulato 96.6 0.07 2.4E-06 54.4 17.2 95 530-627 104-212 (394)
230 3ffl_A Anaphase-promoting comp 96.5 0.018 6.1E-07 50.1 10.2 131 460-606 22-165 (167)
231 3mkq_A Coatomer beta'-subunit; 96.2 0.33 1.1E-05 55.3 22.4 97 367-484 610-707 (814)
232 3o48_A Mitochondria fission 1 96.1 0.076 2.6E-06 44.2 11.6 75 489-563 38-116 (134)
233 1y8m_A FIS1; mitochondria, unk 96.0 0.21 7.1E-06 42.1 14.0 70 457-526 38-112 (144)
234 1y8m_A FIS1; mitochondria, unk 96.0 0.11 3.8E-06 43.8 12.0 80 488-567 36-119 (144)
235 1qsa_A Protein (soluble lytic 96.0 2.4 8.3E-05 46.0 26.3 265 378-688 57-347 (618)
236 3o48_A Mitochondria fission 1 95.8 0.13 4.5E-06 42.8 11.6 78 457-534 39-121 (134)
237 4gns_B Protein CSD3, chitin bi 95.6 0.084 2.9E-06 58.5 12.9 119 431-550 255-396 (754)
238 1qsa_A Protein (soluble lytic 95.5 3.6 0.00012 44.7 35.0 52 563-619 385-436 (618)
239 3kae_A CDC27, possible protein 95.4 1.2 4.2E-05 38.4 18.2 98 459-560 34-149 (242)
240 3mkq_A Coatomer beta'-subunit; 95.3 0.47 1.6E-05 54.0 18.7 45 367-416 663-707 (814)
241 4b4t_P 26S proteasome regulato 95.3 3.4 0.00012 43.0 23.5 163 526-691 138-326 (445)
242 4gns_B Protein CSD3, chitin bi 95.2 0.14 4.9E-06 56.7 12.9 123 395-517 253-397 (754)
243 3mkq_B Coatomer subunit alpha; 94.9 1.1 3.7E-05 39.6 15.3 99 367-483 16-114 (177)
244 1zbp_A Hypothetical protein VP 94.5 0.81 2.8E-05 43.3 14.1 123 501-630 7-134 (273)
245 3mkq_B Coatomer subunit alpha; 94.4 2.3 7.9E-05 37.5 16.2 43 436-483 17-59 (177)
246 4b4t_P 26S proteasome regulato 94.2 6.2 0.00021 41.0 24.0 102 559-689 137-247 (445)
247 1zbp_A Hypothetical protein VP 94.2 0.41 1.4E-05 45.2 11.4 55 402-456 9-63 (273)
248 3spa_A Mtrpol, DNA-directed RN 94.1 0.76 2.6E-05 52.2 15.2 97 391-488 128-231 (1134)
249 3spa_A Mtrpol, DNA-directed RN 94.0 0.92 3.2E-05 51.5 15.7 98 423-521 126-231 (1134)
250 3esl_A Checkpoint serine/threo 93.3 1.8 6E-05 39.0 13.3 73 264-336 58-144 (202)
251 4b4t_S RPN3, 26S proteasome re 92.6 2.2 7.5E-05 44.6 14.9 65 491-557 231-302 (523)
252 4a1g_A Mitotic checkpoint seri 92.5 2 6.9E-05 36.7 12.1 72 263-336 48-130 (152)
253 4a1g_A Mitotic checkpoint seri 92.4 1.8 6.2E-05 37.1 11.7 110 579-691 7-132 (152)
254 2ff4_A Probable regulatory pro 91.7 2.1 7.2E-05 43.7 13.7 55 531-588 177-231 (388)
255 2ff4_A Probable regulatory pro 91.7 2.7 9.3E-05 42.9 14.5 108 502-625 126-234 (388)
256 3esl_A Checkpoint serine/threo 91.4 7.7 0.00026 34.8 16.7 115 373-488 9-145 (202)
257 4aez_C MAD3, mitotic spindle c 90.8 2.7 9.4E-05 38.4 11.7 73 616-690 97-180 (223)
258 4aez_C MAD3, mitotic spindle c 89.5 5 0.00017 36.7 12.4 105 231-337 53-180 (223)
259 4b4t_R RPN7, 26S proteasome re 89.5 1.8 6.2E-05 44.9 11.0 96 426-521 133-238 (429)
260 4b4t_S RPN3, 26S proteasome re 89.3 0.93 3.2E-05 47.4 8.4 66 559-629 231-303 (523)
261 1ya0_A SMG-7 transcript varian 88.9 2.4 8.1E-05 44.7 11.3 77 460-536 154-231 (497)
262 4b4t_R RPN7, 26S proteasome re 88.6 4.2 0.00014 42.1 13.0 59 460-518 133-195 (429)
263 4fhn_B Nucleoporin NUP120; pro 88.4 9.6 0.00033 45.1 17.4 188 396-591 818-1050(1139)
264 3kae_A CDC27, possible protein 88.2 12 0.00041 32.4 20.4 77 367-451 13-89 (242)
265 4fhn_B Nucleoporin NUP120; pro 88.2 25 0.00084 41.6 20.8 191 430-625 818-1050(1139)
266 2wvi_A Mitotic checkpoint seri 87.6 3.5 0.00012 35.8 9.6 57 278-336 67-125 (164)
267 2wvi_A Mitotic checkpoint seri 86.6 12 0.0004 32.5 12.3 47 544-593 79-127 (164)
268 1wy6_A Hypothetical protein ST 86.6 11 0.00038 31.4 11.3 122 363-488 14-155 (172)
269 1ya0_A SMG-7 transcript varian 85.9 4.1 0.00014 42.8 11.0 80 492-571 153-232 (497)
270 1wy6_A Hypothetical protein ST 84.2 17 0.00059 30.3 13.4 144 429-592 12-155 (172)
271 3lpz_A GET4 (YOR164C homolog); 81.7 42 0.0014 32.9 25.9 25 457-481 135-159 (336)
272 4ady_A RPN2, 26S proteasome re 78.0 1E+02 0.0034 35.1 28.5 47 274-322 231-277 (963)
273 2wpv_A GET4, UPF0363 protein Y 68.7 88 0.003 30.3 19.5 26 457-482 133-158 (312)
274 3lpz_A GET4 (YOR164C homolog); 64.3 1.1E+02 0.0038 29.9 27.8 78 422-518 134-214 (336)
275 3lvg_A Clathrin heavy chain 1; 58.3 0.00049 1.7E-08 70.2 -26.0 252 388-680 52-324 (624)
276 2wpv_A GET4, UPF0363 protein Y 52.7 1.7E+02 0.0058 28.3 21.4 27 422-448 132-158 (312)
277 4gq2_M Nucleoporin NUP120; bet 47.6 97 0.0033 35.6 11.6 123 397-537 817-948 (950)
278 4gq2_M Nucleoporin NUP120; bet 46.1 1.7E+02 0.0059 33.5 13.4 52 497-552 816-867 (950)
279 3t5v_B Nuclear mRNA export pro 44.0 2.1E+02 0.0071 29.4 12.2 60 464-523 182-253 (455)
280 3ax2_A Mitochondrial import re 43.1 59 0.002 23.6 5.7 28 531-558 23-50 (73)
281 3ax2_A Mitochondrial import re 42.6 59 0.002 23.6 5.6 34 600-633 21-54 (73)
282 4ady_A RPN2, 26S proteasome re 39.6 4.7E+02 0.016 29.7 27.1 249 367-629 385-661 (963)
283 3lxu_X Tripeptidyl-peptidase 2 35.4 5.1E+02 0.017 30.7 14.7 56 502-558 1295-1350(1354)
284 2w2u_A Hypothetical P60 katani 34.3 66 0.0023 24.1 5.0 19 367-385 30-48 (83)
285 3bu8_A Telomeric repeat-bindin 33.9 1.9E+02 0.0064 26.1 8.4 61 440-500 88-157 (235)
286 2v6y_A AAA family ATPase, P60 33.2 70 0.0024 23.9 5.0 19 367-385 22-40 (83)
287 3t5x_A PCI domain-containing p 31.2 96 0.0033 27.9 6.6 33 492-524 15-47 (203)
288 2ijq_A Hypothetical protein; s 28.7 2.5E+02 0.0086 24.0 8.3 56 498-553 39-103 (161)
289 2yuk_A Myeloid/lymphoid or mix 27.2 20 0.00068 27.5 1.0 29 6-42 37-65 (90)
290 2ijq_A Hypothetical protein; s 26.7 2.7E+02 0.0092 23.8 8.1 56 431-486 39-103 (161)
291 3t5v_B Nuclear mRNA export pro 26.5 1.5E+02 0.0052 30.4 7.8 62 497-558 182-254 (455)
292 2w2u_A Hypothetical P60 katani 26.4 81 0.0028 23.6 4.3 15 503-517 31-45 (83)
293 3bu8_A Telomeric repeat-bindin 26.3 2.8E+02 0.0097 25.0 8.2 65 372-436 88-160 (235)
294 2v6y_A AAA family ATPase, P60 25.3 86 0.0029 23.4 4.3 15 503-517 23-37 (83)
295 1om2_A Protein (mitochondrial 24.0 89 0.003 24.1 4.1 27 531-557 26-52 (95)
296 2crb_A Nuclear receptor bindin 24.0 1.2E+02 0.0041 23.1 4.6 29 660-688 15-43 (97)
297 1om2_A Protein (mitochondrial 23.7 1.1E+02 0.0037 23.6 4.5 30 395-424 25-54 (95)
298 1wfd_A Hypothetical protein 15 22.8 1.3E+02 0.0045 22.9 5.0 18 367-384 26-43 (93)
299 2rpa_A Katanin P60 ATPase-cont 22.4 72 0.0025 23.5 3.2 27 663-689 15-41 (78)
300 2v6x_A Vacuolar protein sortin 21.1 1.5E+02 0.0052 22.0 5.0 19 367-385 24-42 (85)
301 2cwy_A Hypothetical protein TT 20.0 2.4E+02 0.0084 21.5 6.0 15 503-519 53-67 (94)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.5e-38 Score=335.26 Aligned_cols=367 Identities=15% Similarity=0.127 Sum_probs=227.3
Q ss_pred HhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcH
Q 040951 284 ARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDA 363 (701)
Q Consensus 284 ~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a 363 (701)
.+.|++++|...++++++..|++..++..++.++...|++++|...++++++..|.+ ...|..++..+
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-----~~~~~~lg~~~------- 77 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-----AEAYSNLGNVY------- 77 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH-------
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----hHHHHHHHHHH-------
Confidence 334566666666666666666666666666666666666666666666666554443 34455554433
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951 364 EECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A 443 (701)
...|++++|+..|++++..+|++..+|..++.++...|++++|...|++++..+|++..++..++.++...|++++|
T Consensus 78 ---~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 78 ---KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp ---HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred ---HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
+..|++++..+|++..+|..++.++...|++++|+..|++++...|+ ..++..+|.++...|++++|+..|++++...|
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 66666666666666666666666666666666666666666666665 55666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 523 SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLAT 602 (701)
Q Consensus 523 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 602 (701)
+++.++..+|.++...|++++|+..|++++...|+++.++..++.++.. .|++++|+..|++++..+|.++.+|..+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE---KGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666 6666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHH
Q 040951 603 IRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNW 682 (701)
Q Consensus 603 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 682 (701)
+.++...|++++|...++++++..|+ ++.++..+|.++...|++++|...
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPE------------------------------FAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTT------------------------------CHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC------------------------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666666666555554 355555566666666666666666
Q ss_pred HHHHHHhCCCCccccc
Q 040951 683 FNKAVSLDPDTGDFWA 698 (701)
Q Consensus 683 ~~~al~~~p~~~d~w~ 698 (701)
|+++++++|++.++|.
T Consensus 362 ~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 362 YKEAIRISPTFADAYS 377 (388)
T ss_dssp HHHHHTTCTTCHHHHH
T ss_pred HHHHHhhCCCCHHHHH
Confidence 6666666666555543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-37 Score=328.79 Aligned_cols=376 Identities=16% Similarity=0.110 Sum_probs=344.3
Q ss_pred HHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHh----ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 040951 252 ALVEISSEEEARILLHRAVECCPLDVELWLALAR----LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVG 327 (701)
Q Consensus 252 ~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~----l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~ 327 (701)
.+...+++++|+..+.++++..|++...+..++. .+++++|...++++++.+|.++.+|..+|.++...|++++|.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455669999999999999999999888776554 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951 328 KIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRE 407 (701)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 407 (701)
..|++++...|+. ...|..++..+ ...|++++|+..|++++..+|++..++..++.++...|+++
T Consensus 88 ~~~~~al~~~p~~-----~~~~~~l~~~~----------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 88 EHYRHALRLKPDF-----IDGYINLAAAL----------VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHHHHCTTC-----HHHHHHHHHHH----------HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHcCcch-----HHHHHHHHHHH----------HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHH
Confidence 9999999987765 56677777555 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 040951 408 SLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDM 487 (701)
Q Consensus 408 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 487 (701)
+|...|++++..+|.+..+|..++.++...|++++|+..|++++..+|++..++..++.++...|++++|+..|++++..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951 488 GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLA 566 (701)
Q Consensus 488 ~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 566 (701)
.|+ +.++..++.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++.+|.++.++..++
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 998 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccch
Q 040951 567 NLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRK 646 (701)
Q Consensus 567 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~ 646 (701)
.++.. .|++++|+..|++++..+|+++.++..++.++...|++++|...|+++++..|++
T Consensus 313 ~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----------------- 372 (388)
T 1w3b_A 313 NIKRE---QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----------------- 372 (388)
T ss_dssp HHHHT---TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-----------------
T ss_pred HHHHH---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------
Confidence 99999 9999999999999999999999999999999999999999999999999988874
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 040951 647 SKGKDALVKSDRDPHVFAAVAKLFWHDRK 675 (701)
Q Consensus 647 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 675 (701)
+.++..+|.++...|+
T Consensus 373 -------------~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 373 -------------ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -------------HHHHHHHHHHHHHTCC
T ss_pred -------------HHHHHhHHHHHHHccC
Confidence 6777777777766653
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-37 Score=348.00 Aligned_cols=477 Identities=15% Similarity=0.069 Sum_probs=383.6
Q ss_pred hcHHHHHHHHHHHhhhCC-CCHHHHHHHHh----hcCcchHHHHHHHHHHhCCCcHHHHHHHHHcc---cCHHHHHHHHH
Q 040951 166 KEEAAARKLITKGCNMCP-KNEDVWLEACR----LARPDEAKGVVAKGVRQIPKSVRLWLQAAELD---HDKANKSRVLR 237 (701)
Q Consensus 166 g~~~~A~~~~~~~~~~~P-~~~~~wl~~~~----l~~~~~A~~~l~~al~~~P~~~~lw~~~~~le---~~~~~a~~~l~ 237 (701)
|.+..++..+.. .| .+...|...++ .+..++|..+|.+++...|++ ..|..++... .+++.|+.+|+
T Consensus 67 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 67 GSFLKERNAQNT----DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccCCCCCcccc----chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHH
Confidence 344455555432 33 45566665554 355678999999999888866 3444444433 27888888888
Q ss_pred HHHHhcCCCHHHHHHH----HhhcCHHHHHHHHHHHHHHCCCC-------------------HHHHHHHH----hccChH
Q 040951 238 MALDEIPDSVRLWKAL----VEISSEEEARILLHRAVECCPLD-------------------VELWLALA----RLETYG 290 (701)
Q Consensus 238 kal~~~P~~~~l~~~~----~~l~~~~~A~~~l~~a~~~~P~~-------------------~~l~~~l~----~l~~~~ 290 (701)
+++.. |.++..|..+ ...+++++|+.+|++ ..|.. ...|..++ +.|+++
T Consensus 142 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 142 KEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 88765 5566655544 345588888888885 34554 55665544 447888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHH--H-HHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHH
Q 040951 291 VARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGK--I-IERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECK 367 (701)
Q Consensus 291 ~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~--~-~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~ 367 (701)
+|+..|+++++.+|.+..+|..++.++...+....+.. + +.+... .+ .......|.. .+..+.
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~~~~~~~----------~~~~~~ 283 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK---ED-AAFLRSLYML----------KLNKTS 283 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG---GG-HHHHHHHHHT----------TSCTTT
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc---ch-HHHHHHHHHH----------HHHHHc
Confidence 88888888888888888888888776654432221110 0 111111 00 0000111111 123346
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 040951 368 KRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDIL 447 (701)
Q Consensus 368 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l 447 (701)
..|++++|+.+|++++.. |.+..+|..++.++...|++++|..+|++++...|.+..++..++.++...|++++|+.++
T Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 789999999999999887 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH
Q 040951 448 QEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN 526 (701)
Q Consensus 448 ~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 526 (701)
++++...|++..+|..++.++...|++++|+.+|++++...|. ..+|..++.++...|++++|+.+|++++...|++..
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 363 NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 9999999999999999999999999999999999999999988 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh------CCCC-HHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK------NPLN-PEIW 599 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~------~p~~-~~~~ 599 (701)
++..++.++...|++++|++.|++++...|.++.+|..++.++.. .|++++|+..|++++.. +|++ ..+|
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN---KSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999999 99999999999999998 5654 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKA 679 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 679 (701)
..++.++...|++++|...|+++++..|+ ++.++..+|.+|...|++++|
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTN------------------------------DANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSC------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999886 488999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccccc
Q 040951 680 RNWFNKAVSLDPDTGDFWAL 699 (701)
Q Consensus 680 ~~~~~~al~~~p~~~d~w~~ 699 (701)
..+|+++++++|+++++|..
T Consensus 570 ~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 570 ITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHH
Confidence 99999999999999888754
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-36 Score=336.32 Aligned_cols=456 Identities=13% Similarity=0.037 Sum_probs=389.0
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHh----hcCcchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHH
Q 040951 158 AARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACR----LARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKA 230 (701)
Q Consensus 158 ~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~----l~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~ 230 (701)
.++.....|++++|..++.+++...|++ ..|...+. .+..+.|..+|.+++.. |.++..|..++.... +++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHH
Confidence 3444455699999999999999999965 44443333 35677999999998765 777888888776554 888
Q ss_pred HHHHHHHHHHHhcCCC-------------------HHHHHHHH----hhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhcc
Q 040951 231 NKSRVLRMALDEIPDS-------------------VRLWKALV----EISSEEEARILLHRAVECCPLDVELWLALARLE 287 (701)
Q Consensus 231 ~a~~~l~kal~~~P~~-------------------~~l~~~~~----~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l~ 287 (701)
+|+++|++ ..|.. +..|..++ ..+++++|+.+|+++++..|.++..|..++.+.
T Consensus 168 ~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 168 GALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp HHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhh
Confidence 99999986 45554 66666544 456999999999999999999999999887753
Q ss_pred C--hHHHHHH-----HHHHHHhCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHc
Q 040951 288 T--YGVARSV-----LNKARKKLPK-ERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKA 359 (701)
Q Consensus 288 ~--~~~A~~~-----l~~a~~~~p~-~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~ 359 (701)
- ....... +.+.....|. ...++..++..+.+.|++++|..+|+++++. +. +...|...+..+
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~~l~~~~--- 315 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EK-----SSDLLLCKADTL--- 315 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GG-----CHHHHHHHHHHH---
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cc-----hHHHHHHHHHHH---
Confidence 1 1111111 3333322222 1223444577777889999999999998775 32 367788877665
Q ss_pred CCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 040951 360 GSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGD 439 (701)
Q Consensus 360 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~ 439 (701)
...|++++|+.+|++++..+|++..+|..++.++...|++++|..++++++...|.+..+|..++.++...|+
T Consensus 316 -------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 316 -------FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp -------HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTC
T ss_pred -------HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGL 518 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al 518 (701)
+++|+.+|+++++.+|.+..+|..++.++...|++++|+.+|++++...|. ..+|..++.++...|++++|+.+|++++
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh------CCCC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 519 KRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ------CPNC-IPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 519 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
+..|.++.+|..+|.++...|++++|+..|+++++. .|++ ..+|..++.++.. .|++++|+..|++++..
T Consensus 469 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 469 ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK---LKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988 5654 7899999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELI 637 (701)
Q Consensus 592 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~ 637 (701)
.|+++.+|..++.++...|++++|...|+++++.+|+++..+..+.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999999999999999999999999998765555444
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=3.4e-35 Score=324.42 Aligned_cols=417 Identities=14% Similarity=0.187 Sum_probs=324.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHcc--cCHHHHHHHHHHHHHhcCCCHHHHHHHHhhc----CHHHHHHHHHHHHHHCCCCHH
Q 040951 205 VAKGVRQIPKSVRLWLQAAELD--HDKANKSRVLRMALDEIPDSVRLWKALVEIS----SEEEARILLHRAVECCPLDVE 278 (701)
Q Consensus 205 l~~al~~~P~~~~lw~~~~~le--~~~~~a~~~l~kal~~~P~~~~l~~~~~~l~----~~~~A~~~l~~a~~~~P~~~~ 278 (701)
|+++|+.+|.++.+|..++.+. .+.+.|+.+|+++++.+|+++.+|..++.++ ++++|+.+|+++++.+| +++
T Consensus 2 le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HID 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHH
T ss_pred hhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChH
Confidence 5666667777777776666642 3666677777777777777777777666554 67777777777777777 566
Q ss_pred HHHHHHh-----ccChHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHHh
Q 040951 279 LWLALAR-----LETYGVARS----VLNKARKK---LPKERAIWIAAAKLEEA---------NGNTSMVGKIIERGIRAL 337 (701)
Q Consensus 279 l~~~l~~-----l~~~~~A~~----~l~~a~~~---~p~~~~~~~~~a~~~~~---------~g~~~~a~~~~~~a~~~~ 337 (701)
+|..+++ .+++++|++ +|++++.. +|.+..+|..++.++.. .|+++.|..+|+++++ .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 7776664 245555443 66666654 34567777777777665 5667777777777776 4
Q ss_pred hcCcccCCHHHHHHHHHHHHHcCC-cHH--HHHhcCCHHHHHHHHHH------HHHh-----CCCC-------HHHHHHH
Q 040951 338 QGEEVVIDRDTWMKEAEIAEKAGS-DAE--ECKKRGSIETARAIFSH------ACTV-----FLTK-------KSIWLKA 396 (701)
Q Consensus 338 ~~~~~~~~~~~w~~~a~~~e~~~~-~a~--~~~~~~~~~~A~~~~~~------al~~-----~p~~-------~~~~~~l 396 (701)
|... ....|..+..+....|. .+. .....+++..|+.+|.. .++. .|.. ..+|..+
T Consensus 160 P~~~---~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 160 PMIN---IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp CCTT---HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred hhhh---HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 4332 13455555543321111 000 01234567888877776 4432 3332 4688888
Q ss_pred HHHHHHcC----CH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHH-h
Q 040951 397 AQLEKTHG----SR----ESLIALLRKAVTYFPQAEVLWLMGAKEKWL-------AGDVP-------AARDILQEAYA-T 453 (701)
Q Consensus 397 a~~~~~~g----~~----~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~g~~~-------~A~~~l~~a~~-~ 453 (701)
+.+....+ +. ..+...|++++..+|.++.+|+.++.++.. .|+++ +|+.+|++++. .
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 87776532 32 478899999999999999999999999986 79987 99999999997 7
Q ss_pred CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-H-HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 454 IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-E-RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531 (701)
Q Consensus 454 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 531 (701)
+|++..+|..++.++...|++++|+.+|++++...|. + .+|..++.++...|++++|+.+|+++++..|.+...+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 9999999999999999999999999999999999987 4 6999999999999999999999999999999888888877
Q ss_pred HHHH-HHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHH
Q 040951 532 GQLE-ERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPE----IWLATIRAE 606 (701)
Q Consensus 532 a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~ 606 (701)
+.+. ...|++++|+.+|+++++.+|+++.+|..++.++.. .|++++|+.+|++++...|.++. +|..++.++
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~---~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh---CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 7764 468999999999999999999999999999999999 99999999999999999876654 999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCC
Q 040951 607 SKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 607 ~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
...|+.+.+..++.++++.+|++
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCchh
Confidence 99999999999999999999953
No 6
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=1.2e-32 Score=304.03 Aligned_cols=425 Identities=12% Similarity=0.134 Sum_probs=345.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHhh---cCHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHhCCCCH
Q 040951 235 VLRMALDEIPDSVRLWKALVEI---SSEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKKLPKER 307 (701)
Q Consensus 235 ~l~kal~~~P~~~~l~~~~~~l---~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~~p~~~ 307 (701)
+|+++++.+|.++.+|..++.. ++++.|+.+|+++++.+|.+..+|..++.+ |++++|+.+|++++...| +.
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 4789999999999999988765 499999999999999999999999998876 699999999999999999 68
Q ss_pred HHHHHHHHHH-HHcCChhHHHH----HHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHH
Q 040951 308 AIWIAAAKLE-EANGNTSMVGK----IIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHA 382 (701)
Q Consensus 308 ~~~~~~a~~~-~~~g~~~~a~~----~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~a 382 (701)
++|+.++... ...|+++.|.. +|++++...+.+. .....|..++.+....... ..+...|+++.|+.+|+++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MSYQIWVDYINFLKGVEAV-GSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TCHHHHHHHHHHHHHSCCC-SSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--ccHHHHHHHHHHHhcCCCc-ccHHHHhHHHHHHHHHHHH
Confidence 8999999654 56688877665 8888887654332 2468899888765110000 0001268899999999999
Q ss_pred HHhCCCC--HHHHHHHHHHHHH-------------cCCHHHHHHHHHH------HHHh-----CCCc-------HHHHHH
Q 040951 383 CTVFLTK--KSIWLKAAQLEKT-------------HGSRESLIALLRK------AVTY-----FPQA-------EVLWLM 429 (701)
Q Consensus 383 l~~~p~~--~~~~~~la~~~~~-------------~g~~~~A~~~~~~------al~~-----~p~~-------~~~~~~ 429 (701)
+. .|.+ ..+|..+..+... .+++..|...+.. .+.. .|.. ..+|..
T Consensus 157 l~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 157 CV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp TT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred Hh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 99 5754 3577777665533 3456667766655 3332 2322 357777
Q ss_pred HHHHHHHc----CCh----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCcHH-------HHHHHHHHHHh-
Q 040951 430 GAKEKWLA----GDV----PAARDILQEAYATIPNSEEIWLAAFKLEFE-------NRELE-------RARMLLAKARD- 486 (701)
Q Consensus 430 ~a~~~~~~----g~~----~~A~~~l~~a~~~~p~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~a~~- 486 (701)
+....... ++. ..++.+|++++..+|.++.+|+.++.++.. .|+++ +|+.+|++++.
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 76554432 233 478899999999999999999999999886 68876 89999999997
Q ss_pred cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHH
Q 040951 487 MGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF-NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYS 564 (701)
Q Consensus 487 ~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 564 (701)
..|+ ..+|..++.++...|++++|+.+|+++++..|.++ .+|..++.++.+.|++++|+.+|+++++..|.+...+..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 6787 99999999999999999999999999999999885 699999999999999999999999999999988888877
Q ss_pred HHHHH-hhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCc
Q 040951 565 LANLE-EKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHH 643 (701)
Q Consensus 565 la~~~-~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~ 643 (701)
.+.+. .. .|++++|+.+|+++++.+|+++.+|..++.++...|+.++|+.+|++++..+|.++.
T Consensus 396 ~a~~~~~~---~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~------------ 460 (530)
T 2ooe_A 396 AALMEYYC---SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE------------ 460 (530)
T ss_dssp HHHHHHHH---TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG------------
T ss_pred HHHHHHHH---cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH------------
Confidence 77663 46 899999999999999999999999999999999999999999999999998875421
Q ss_pred cchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 644 DRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 644 ~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
....+|..++.+....|+.+.+..++.++++..|++
T Consensus 461 --------------~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 461 --------------KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp --------------GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred --------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 123477777888888999999999999999999853
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=305.69 Aligned_cols=408 Identities=13% Similarity=0.072 Sum_probs=336.8
Q ss_pred HHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHH----hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 040951 252 ALVEISSEEEARILLHRAVECCPLDVELWLALA----RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVG 327 (701)
Q Consensus 252 ~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~----~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~ 327 (701)
.+...+++++|+..|+++++..| +..+|..++ ..|++++|+..|+++++.+|++..+|..+|.++...|++++|.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45566799999999999999999 577776544 4599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHH---------------------------HHHHH
Q 040951 328 KIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETA---------------------------RAIFS 380 (701)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A---------------------------~~~~~ 380 (701)
..|++++...|.+.... ...+......... .......+.++.+ ...+.
T Consensus 94 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 94 FDLSVLSLNGDFNDASI--EPMLERNLNKQAM---SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHSSSCCGGGT--HHHHHHHHHHHHH---HHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHhcCCCccchH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999776543221 1111111100000 0000000000000 00000
Q ss_pred HHHHh--------CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCcHHHHHHHHHHHH
Q 040951 381 HACTV--------FLTKKSIWLKAAQLEKT---HGSRESLIALLRKAVT-----Y--F-------PQAEVLWLMGAKEKW 435 (701)
Q Consensus 381 ~al~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~~a~~~~ 435 (701)
..... .|++...+...+..+.. .|++++|+..|++++. . + |.+..++..+|.++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00000 14557788888888776 8999999999999998 5 3 445678899999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHH
Q 040951 436 LAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFI 514 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~ 514 (701)
..|++++|+..|++++..+|+ ..++..++.++...|++++|+..|++++...|. ..++..++.++...|++++|+..|
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999 889999999999999999999999999999887 889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC
Q 040951 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 515 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 594 (701)
++++...|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++.. .|++++|+..|++++...|+
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD---KNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999888
Q ss_pred CHH------HHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHH
Q 040951 595 NPE------IWLATIRAESK---HGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAA 665 (701)
Q Consensus 595 ~~~------~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~ 665 (701)
++. +|..+|.++.. .|++++|...+++++...|+ ++.++..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~ 454 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR------------------------------SEQAKIG 454 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT------------------------------CHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc------------------------------cHHHHHH
Confidence 755 89999999999 99999999999999998886 4788899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 040951 666 VAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWAL 699 (701)
Q Consensus 666 lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~ 699 (701)
+|.++...|++++|..+|+++++++|+++++|..
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999999999999999999999999888753
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.9e-32 Score=301.47 Aligned_cols=391 Identities=12% Similarity=0.067 Sum_probs=239.1
Q ss_pred HHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHH----hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040951 253 LVEISSEEEARILLHRAVECCPLDVELWLALA----RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGK 328 (701)
Q Consensus 253 ~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~----~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~ 328 (701)
+...+++++|+..|+++++..|+++.+|..++ ..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|..
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445777888888888888888777766544 34788888888888888888888888888888888888888887
Q ss_pred HHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCH------------------
Q 040951 329 IIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKK------------------ 390 (701)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------------ 390 (701)
.|+ ++...|... ..++.. +...+....|+..++.++...|...
T Consensus 115 ~~~-~~~~~~~~~-----~~~~~~-------------~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 115 DLS-VLSLNGDFD-----GASIEP-------------MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHH-HHC----------------C-------------HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHH-HHhcCCCCC-----hHHHHH-------------HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 775 554444332 111110 1233344566666666665543222
Q ss_pred -------------------HHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHH
Q 040951 391 -------------------SIWLKAAQLE--------KTHGSRESLIALLRKAVTYFPQAEV-------LWLMGAKEKWL 436 (701)
Q Consensus 391 -------------------~~~~~la~~~--------~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~a~~~~~ 436 (701)
..+..+..++ ...|++++|...|++++..+|.++. ++..++.++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 1222222222 1223556666666666666665543 24444555555
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHH
Q 040951 437 AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIE 515 (701)
Q Consensus 437 ~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~ 515 (701)
.|++++|+..|++++..+|+ ..++..++.++...|++++|+..|++++...|. +.++..+|.++...|++++|+..|+
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666666666666666665 556666666666666666666666666666655 5566666666666666666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 516 EGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
+++...|+++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++.. .|++++|+..|++++...|++
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD---RGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCcc
Confidence 66666666666666666666666666666666666666666666666666666666 666666666666666655543
Q ss_pred HH------HHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCC
Q 040951 596 PE------IWLATIRAESKH----------GNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRD 659 (701)
Q Consensus 596 ~~------~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~ 659 (701)
+. .+...+.++... |++++|...|+++++..|+ +
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------------------------------~ 461 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR------------------------------S 461 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT------------------------------C
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC------------------------------C
Confidence 32 233444555555 6666666666666665554 6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
+.++..+|.++...|++++|..+|+++++++|++++.
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8899999999999999999999999999999987654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.4e-31 Score=289.15 Aligned_cols=329 Identities=14% Similarity=0.019 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcC
Q 040951 291 VARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRG 370 (701)
Q Consensus 291 ~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~ 370 (701)
.+...+.+++..+|.++..|+.+|..+...|++++|..+|+++++..|.+ ...|..++..+ ...|
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~----------~~~g 74 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVF----------LAMG 74 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH----------HHTT
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHH----------HHCC
Confidence 34455666667777777777777777777777777777777777765554 45666665444 7777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH------------HHHHH
Q 040951 371 SIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE---VLWLMG------------AKEKW 435 (701)
Q Consensus 371 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~------------a~~~~ 435 (701)
++++|+..|+++++.+|++..++..++.++...|++++|...|++++..+|.+. .++..+ |.++.
T Consensus 75 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 75 KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888777777777777788888888888888888888877777776 665554 55577
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHH
Q 040951 436 LAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFI 514 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~ 514 (701)
..|++++|+..|++++...|.+..++..++.++...|++++|+..|++++...|. +.+|..++.++...|++++|+..|
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7888888888888888888888888888888888888888888888888888777 888888888888888888888888
Q ss_pred HHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhCCCCHH----HHHHHHHHHhhhccCCCH
Q 040951 515 EEGLKRFPSFFNLWLML------------GQLEERLGHLKEAKEAYQSGCNQCPNCIP----LWYSLANLEEKRNGLNGL 578 (701)
Q Consensus 515 ~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~g~~ 578 (701)
++++...|++...+..+ |.++...|++++|+..|++++...|.++. ++..++.++.. .|++
T Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~---~g~~ 311 (450)
T 2y4t_A 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK---DEKP 311 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT---TTCH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH---CCCH
Confidence 88888888887777666 88888889999999999999998888744 67888888888 8999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 579 SKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELI 637 (701)
Q Consensus 579 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~ 637 (701)
++|+..+++++..+|+++.+|..+|.++...|++++|...|+++++..|+++..+..+.
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999989998899999999999999999999999999998888776665544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3e-31 Score=286.43 Aligned_cols=351 Identities=16% Similarity=0.046 Sum_probs=282.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH----hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 040951 260 EEARILLHRAVECCPLDVELWLALA----RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIR 335 (701)
Q Consensus 260 ~~A~~~l~~a~~~~P~~~~l~~~l~----~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~ 335 (701)
..+...+..++...|.++..|..++ +.|++++|+..|+++++..|.++.+|..+|.++...|++++|...|+++++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445566667777777777766544 347888888888888888888888888888888888888888888888887
Q ss_pred HhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHH
Q 040951 336 ALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKK---SIWLKA------------AQLE 400 (701)
Q Consensus 336 ~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~ 400 (701)
..|.+ ...|..++..+ ...|++++|+..|++++..+|++. .+|..+ +.++
T Consensus 89 ~~p~~-----~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 89 LKMDF-----TAARLQRGHLL----------LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp HCTTC-----HHHHHHHHHHH----------HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCc-----HHHHHHHHHHH----------HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654 45666666544 778888888888888888888777 666655 5558
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Q 040951 401 KTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML 480 (701)
Q Consensus 401 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 480 (701)
...|++++|+..|++++...|.+..++..++.++...|++++|+..|++++..+|++..+|..++.++...|++++|+..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC-HHHHHHH------------HHHHHHhCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHH
Q 040951 481 LAKARDMGGT-ERVWMKS------------AIVERELGNNAEERGFIEEGLKRFPSFFN----LWLMLGQLEERLGHLKE 543 (701)
Q Consensus 481 ~~~a~~~~p~-~~~~~~~------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~ 543 (701)
|++++...|+ ...+..+ +.++...|++++|+.+|++++...|+++. ++..+|.++...|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 9999988887 5555554 88899999999999999999999999854 78899999999999999
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------HhcC-
Q 040951 544 AKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE------------SKHG- 610 (701)
Q Consensus 544 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~------------~~~g- 610 (701)
|+..|++++...|+++.+|..+|.++.. .|++++|+..|+++++.+|+++.++..++.+. ...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLI---EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 9999999999999999999999999999 99999999999999999999999999998553 3334
Q ss_pred ----CHHHHHHHHHH-HHHhCCC
Q 040951 611 ----NKKEADSFIAK-ALQKCPN 628 (701)
Q Consensus 611 ----~~~~A~~~~~~-al~~~p~ 628 (701)
+.+++...|.+ +++..|+
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCC
Confidence 45566666765 6666665
No 11
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=2.4e-31 Score=294.73 Aligned_cols=423 Identities=13% Similarity=0.130 Sum_probs=332.7
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHhhc----CcchHHHHHHHHHHhCCCcHHHHHHHHHccc---C---HHHHHHHHHH
Q 040951 169 AAARKLITKGCNMCPKNEDVWLEACRLA----RPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---D---KANKSRVLRM 238 (701)
Q Consensus 169 ~~A~~~~~~~~~~~P~~~~~wl~~~~l~----~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~---~~~a~~~l~k 238 (701)
..-...+++.+..+|.|.+.|+.+++.. ..+.++.+|++++...|.+..+|..+++++. + ...+..+|++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 4455677888888888888888888763 3457888888888888888888888888775 4 7778888888
Q ss_pred HHHhcC--CCHHHHHHHHhhc----C--------HHHHHHHHHHHHHH----CCCCHHHHHHHHhc-------------c
Q 040951 239 ALDEIP--DSVRLWKALVEIS----S--------EEEARILLHRAVEC----CPLDVELWLALARL-------------E 287 (701)
Q Consensus 239 al~~~P--~~~~l~~~~~~l~----~--------~~~A~~~l~~a~~~----~P~~~~l~~~l~~l-------------~ 287 (701)
++...| .++.+|..|+... + .+..+.+|++|+.. +|.+..+|..++.+ +
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 888884 6788888887542 2 13344777777764 45567788777754 1
Q ss_pred ChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHH
Q 040951 288 TYGVARSVLNKARKKLPKE--RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEE 365 (701)
Q Consensus 288 ~~~~A~~~l~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~ 365 (701)
+.+.++.+|.+++. .|.. ..+|..+..++...+.. .+..++..
T Consensus 209 ~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e--------------------------------- 253 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQL-TARRHIGE--------------------------------- 253 (679)
T ss_dssp HHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTT-THHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcc-hHHHHHHH---------------------------------
Confidence 34667777777775 4542 45666666665543221 22222221
Q ss_pred HHhcCCHHHHHHHHHHH------HHh-CCC-------------------CHHHHHHHHHHHHHcC-------CHHHHHHH
Q 040951 366 CKKRGSIETARAIFSHA------CTV-FLT-------------------KKSIWLKAAQLEKTHG-------SRESLIAL 412 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~a------l~~-~p~-------------------~~~~~~~la~~~~~~g-------~~~~A~~~ 412 (701)
...+|..|+..|... +.. .|. ....|..++.++...+ ....+..+
T Consensus 254 --~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~ 331 (679)
T 4e6h_A 254 --LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYV 331 (679)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHH
Confidence 112333344444331 111 121 1368999999988754 23446788
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---
Q 040951 413 LRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR-DILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG--- 488 (701)
Q Consensus 413 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--- 488 (701)
|++++..+|..+.+|+.++.++...|+.++|+ .+|++++..+|.+..+|+.++.++...|++++|+.+|++++...
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999752
Q ss_pred --------C-----------C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 040951 489 --------G-----------T-ERVWMKSAIVERELGNNAEERGFIEEGLKR-FPSFFNLWLMLGQLEERLGH-LKEAKE 546 (701)
Q Consensus 489 --------p-----------~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~-~~~A~~ 546 (701)
| + ..+|..++.++.+.|+.+.|+.+|.+|++. .+....+|...+.+....++ ++.|+.
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ 491 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACK 491 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHH
Confidence 4 2 458999999999999999999999999998 44557889999998877754 999999
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 547 AYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP---LNPEIWLATIRAESKHGNKKEADSFIAKAL 623 (701)
Q Consensus 547 ~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 623 (701)
+|+.+++.+|+++.+|..++.++.. .|+.+.|+.+|++++...| +...+|..+..++...|+.+.+..++.++.
T Consensus 492 ife~~Lk~~p~~~~~w~~y~~fe~~---~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 492 VLELGLKYFATDGEYINKYLDFLIY---VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999988 456899999999999999999999999999
Q ss_pred HhCCCCHH
Q 040951 624 QKCPNSGI 631 (701)
Q Consensus 624 ~~~p~~~~ 631 (701)
+.+|+++.
T Consensus 569 ~~~P~~~~ 576 (679)
T 4e6h_A 569 EKFPEVNK 576 (679)
T ss_dssp HHSTTCCH
T ss_pred HhCCCCcH
Confidence 99999864
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=292.02 Aligned_cols=408 Identities=11% Similarity=0.054 Sum_probs=336.2
Q ss_pred HHHHHHHHcc---cCHHHHHHHHHHHHHhcCCCHHHHHH----HHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHHh----
Q 040951 217 RLWLQAAELD---HDKANKSRVLRMALDEIPDSVRLWKA----LVEISSEEEARILLHRAVECCPLDVELWLALAR---- 285 (701)
Q Consensus 217 ~lw~~~~~le---~~~~~a~~~l~kal~~~P~~~~l~~~----~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~---- 285 (701)
..|...+... .++..|...|+++++.+|+ +..|.. +...+++++|+..++++++..|++..+|..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 4455554433 3899999999999999994 665544 445569999999999999999999988876554
Q ss_pred ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHH---HHH-----------------------------
Q 040951 286 LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKII---ERG----------------------------- 333 (701)
Q Consensus 286 l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~---~~a----------------------------- 333 (701)
.|++++|+..|+++++..|.+...................+...+ +.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 589999999999999999976544433333222211111111111 000
Q ss_pred --HHHhhcCc------ccCCHHHHHHHHHHHHHcCCcHHHHHh---cCCHHHHHHHHHHHHH-----h--C-------CC
Q 040951 334 --IRALQGEE------VVIDRDTWMKEAEIAEKAGSDAEECKK---RGSIETARAIFSHACT-----V--F-------LT 388 (701)
Q Consensus 334 --~~~~~~~~------~~~~~~~w~~~a~~~e~~~~~a~~~~~---~~~~~~A~~~~~~al~-----~--~-------p~ 388 (701)
+....... .......|+..+... .. .|++++|+.+|++++. . . |.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSN----------LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH----------HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH----------HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 00000000 001134455444332 43 8999999999999999 5 3 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 389 KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLE 468 (701)
Q Consensus 389 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~ 468 (701)
+..+|..++.++...|++++|...|++++...|. ..++..++.++...|++++|+..|++++..+|.+..++..++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040951 469 FENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEA 547 (701)
Q Consensus 469 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 547 (701)
...|++++|+..|++++...|. ..++..++.++...|++++|+.+|++++...|+++.++..+|.++...|++++|...
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCHH------HHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 548 YQSGCNQCPNCIP------LWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 548 ~~~al~~~p~~~~------~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
|++++...|.+.. ++..+|.++...+..|++++|+..|++++..+|+++.++..++.++...|++++|...|++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999988854 8999999887500038999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHH
Q 040951 622 ALQKCPNSGILWAEL 636 (701)
Q Consensus 622 al~~~p~~~~l~~~~ 636 (701)
+++..|+++..+...
T Consensus 475 a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 475 SADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHCSSHHHHHHHH
T ss_pred HHHhccccHHHHHHH
Confidence 999999988776654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.7e-31 Score=295.25 Aligned_cols=430 Identities=11% Similarity=0.043 Sum_probs=308.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhh----cCcchHHHHHHHHHHhCCCcHHHHHHHHHccc---CHHH
Q 040951 159 ARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRL----ARPDEAKGVVAKGVRQIPKSVRLWLQAAELDH---DKAN 231 (701)
Q Consensus 159 arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l----~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~---~~~~ 231 (701)
+......|++++|...|.++++.+|+++.+|...+.. +..++|...+.++++.+|+++..|..++.+.. ++++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHH
Confidence 3334445788888888888888888888877655543 45567777777777777777776666655433 5555
Q ss_pred HHHHHHHHHHhcCCCHHHHHH-HHhhcCHHHHHHHHHHHHHHCCCCH-------HHHHHHHhccChHHHHHHHHHHHHhC
Q 040951 232 KSRVLRMALDEIPDSVRLWKA-LVEISSEEEARILLHRAVECCPLDV-------ELWLALARLETYGVARSVLNKARKKL 303 (701)
Q Consensus 232 a~~~l~kal~~~P~~~~l~~~-~~~l~~~~~A~~~l~~a~~~~P~~~-------~l~~~l~~l~~~~~A~~~l~~a~~~~ 303 (701)
|...|+ ++...|+....+.. ++.......|...+.+++...|... .....+....+.+.+...+.+.....
T Consensus 112 A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 112 AMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 555553 55555554443221 1122233444455555444433221 01111111112222211111111111
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHH
Q 040951 304 PKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHAC 383 (701)
Q Consensus 304 p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al 383 (701)
|.....+..++.++. . ..+......|++++|+.+|++++
T Consensus 191 ~~~~~~~~~l~~~~~---------------------~--------------------~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 191 TAYALLSDALQRLYS---------------------A--------------------TDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp SSHHHHHHHHHHHHT---------------------C--------------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---------------------h--------------------hhhhhHHHHHHHHHHHHHHHHHH
Confidence 111111111111100 0 00111244568899999999999
Q ss_pred HhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 040951 384 TVFLTKKS-------IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456 (701)
Q Consensus 384 ~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~ 456 (701)
..+|++.. ++..++.++...|++++|...|++++..+|. ..++..+|.++...|++++|+..|++++..+|+
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Confidence 99999866 4667778888999999999999999999999 899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLE 535 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 535 (701)
+..++..++.++...|++++|+..|++++...|. ..++..++.++...|++++|+.+|++++..+|+++.++..+|.++
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhCCCCHH------HHHHHHHHHhhhccC----------CCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 536 ERLGHLKEAKEAYQSGCNQCPNCIP------LWYSLANLEEKRNGL----------NGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 536 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~----------g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
...|++++|+..|++++...|.+.. .+..++.++.. . |++++|+..|++++..+|+++.++
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR---QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH---HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH---HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999998876543 35566788887 7 999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~ 634 (701)
..+|.++...|++++|...|+++++..|+++....
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999875543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.2e-30 Score=272.02 Aligned_cols=311 Identities=13% Similarity=0.040 Sum_probs=286.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 040951 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEV 425 (701)
Q Consensus 346 ~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 425 (701)
...|+..+..+ ...|++++|+..|++++..+|++..+|..++.++...|++++|...|++++..+|.+..
T Consensus 3 ~~~~~~~~~~~----------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 72 (359)
T 3ieg_A 3 VEKHLELGKKL----------LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA 72 (359)
T ss_dssp HHHHHHHHHHH----------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHH----------HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch
Confidence 34566666544 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCcHHHHHHHHHHHHhcCCC
Q 040951 426 LWLMGAKEKWLAGDVPAARDILQEAYATIP---NSEEIWLAA------------FKLEFENRELERARMLLAKARDMGGT 490 (701)
Q Consensus 426 ~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~p~ 490 (701)
++..+|.++...|++++|+..|++++..+| ++..++..+ +.++...|++++|+..+++++...|.
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW 152 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999 888887776 68899999999999999999999998
Q ss_pred -HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHH----
Q 040951 491 -ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSL---- 565 (701)
Q Consensus 491 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---- 565 (701)
+.++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|...|+++++..|++...+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 232 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred --------HHHHhhhccCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 566 --------ANLEEKRNGLNGLSKARAVLSVARLKNPLNPE----IWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633 (701)
Q Consensus 566 --------a~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~ 633 (701)
|.++.. .|++++|+..|++++...|+++. ++..+|.++...|++++|...++++++.+|+
T Consensus 233 ~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----- 304 (359)
T 3ieg_A 233 KLNKLIESAEELIR---DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD----- 304 (359)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----
Confidence 777888 99999999999999999999874 4667899999999999999999999998886
Q ss_pred HHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 040951 634 AELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWAL 699 (701)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~ 699 (701)
++.++..+|.++...|++++|..+|+++++++|++.++|..
T Consensus 305 -------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 305 -------------------------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 58899999999999999999999999999999999887754
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.9e-29 Score=263.01 Aligned_cols=312 Identities=14% Similarity=0.035 Sum_probs=251.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 306 ERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTV 385 (701)
Q Consensus 306 ~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~ 385 (701)
+++.|+.+|..+...|++++|...|+++++..|.+ ...|...+..+ ...|++++|+..|++++..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~----------~~~~~~~~A~~~~~~~~~~ 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVF----------LAMGKSKAALPDLTKVIAL 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH----------HHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----HHHHHHHHHHH----------HHccCHHHHHHHHHHHHHh
Confidence 35667777777777777777777777777766554 45566655444 6777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHcCChHHHHHHHHHH
Q 040951 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP---QAEVLWLMG------------AKEKWLAGDVPAARDILQEA 450 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~------------a~~~~~~g~~~~A~~~l~~a 450 (701)
+|++..+|..++.++...|++++|...|++++...| .+..++..+ +.++...|++++|+..|+++
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777 666666665 67788888888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHH
Q 040951 451 YATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWL 529 (701)
Q Consensus 451 ~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 529 (701)
+..+|++..++..++.++...|++++|...+++++...|. +.++..+|.++...|++++|+..|+++++..|+++..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 226 (359)
T 3ieg_A 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH
Confidence 8888888888888888888888888888888888888887 888888888888888888888888888888888877654
Q ss_pred H------------HHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH----HHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 530 M------------LGQLEERLGHLKEAKEAYQSGCNQCPNCIPL----WYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 530 ~------------la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
. +|.++...|++++|...|++++...|+++.. +..+|.++.. .|++++|+..|++++..+|
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK---DEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCc
Confidence 3 3777888899999999999999988888643 5668888888 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 594 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
+++.+|..+|.++...|++++|...|+++++.+|+++.++..
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 999999999999999999999999999999888886554443
No 16
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.98 E-value=5.2e-29 Score=276.08 Aligned_cols=416 Identities=14% Similarity=0.193 Sum_probs=328.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhc----C---cchHHHHHHHHHHhCC--CcHHHHHHHHHcc
Q 040951 156 IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLA----R---PDEAKGVVAKGVRQIP--KSVRLWLQAAELD 226 (701)
Q Consensus 156 i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~----~---~~~A~~~l~~al~~~P--~~~~lw~~~~~le 226 (701)
+.-++..+..|.++.++.++++++..+|.+..+|+.++.++ . .+.+..+|++|+...| .++.+|..++.+.
T Consensus 70 ~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~ 149 (679)
T 4e6h_A 70 VKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYV 149 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 66666677778999999999999999999999999999874 3 5689999999999994 7999999998764
Q ss_pred c---C--------HHHHHHHHHHHHHh----cCCCHHHHHHHHhhc-------------CHHHHHHHHHHHHHHCCCC--
Q 040951 227 H---D--------KANKSRVLRMALDE----IPDSVRLWKALVEIS-------------SEEEARILLHRAVECCPLD-- 276 (701)
Q Consensus 227 ~---~--------~~~a~~~l~kal~~----~P~~~~l~~~~~~l~-------------~~~~A~~~l~~a~~~~P~~-- 276 (701)
. + ....+++|++|++. +|.+..+|..|+.++ +.+.++.+|.+++. .|..
T Consensus 150 ~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~~~ 228 (679)
T 4e6h_A 150 RKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDCL 228 (679)
T ss_dssp HHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCSSH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccHHH
Confidence 3 1 12345888888874 677889999999753 45789999999995 6754
Q ss_pred HHHHHHHHhccC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-------hhcC------
Q 040951 277 VELWLALARLET---YGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRA-------LQGE------ 340 (701)
Q Consensus 277 ~~l~~~l~~l~~---~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~-------~~~~------ 340 (701)
..+|..+..++. ...+.+.+. +...+++.|...+...-.. .|..
T Consensus 229 ~~~w~~Y~~fe~~~~~~~a~~~~~--------------------e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 229 ESMWQRYTQWEQDVNQLTARRHIG--------------------ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHH--------------------HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHhcCcchHHHHHH--------------------HhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 367777766532 111222111 1112233344333332111 1110
Q ss_pred ------c--ccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-H
Q 040951 341 ------E--VVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLI-A 411 (701)
Q Consensus 341 ------~--~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~ 411 (701)
. .......|..++.+.+..+..... .......+.+|++++..+|.++.+|+.++.++...|+.++|. .
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~---~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD---DLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCH---HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccc---hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 001246788888765221100000 012456778999999999999999999999999999999997 9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHH
Q 040951 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT-----------IPN-----------SEEIWLAAFKLEF 469 (701)
Q Consensus 412 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~-----------~p~-----------~~~~~~~la~~~~ 469 (701)
+|++++..+|.+..+|+.++.+....|++++|+.+|++++.. .|. ...+|+.++.+..
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999975 253 3458999999999
Q ss_pred HcCcHHHHHHHHHHHHhc-CCC-HHHHHHHHHHHHHhC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040951 470 ENRELERARMLLAKARDM-GGT-ERVWMKSAIVERELG-NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKE 546 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~-~p~-~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 546 (701)
+.|+.+.|+.+|.++++. .+. ..+|...+.++...+ +++.|+.+|+.+++.+|+++.+|..++.+....|+.+.|+.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999987 333 889999999887765 49999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCC---CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 547 AYQSGCNQCP---NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 547 ~~~~al~~~p---~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
+|++++...| ....+|..+..++.. .|+.+.+..+++++.+..|+++.+
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~---~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESK---VGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999999998 367899999999999 999999999999999999998644
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.4e-29 Score=275.36 Aligned_cols=375 Identities=13% Similarity=0.032 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCc----ccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHH
Q 040951 307 RAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEE----VVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHA 382 (701)
Q Consensus 307 ~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~----~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~a 382 (701)
..++..+|.++...|++++|+..|+++++..+... .......|..++.. |...|++++|+..|+++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~----------y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV----------YYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH----------HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH----------HHHcCChHHHHHHHHHH
Confidence 56778899999999999999999999998755322 11123456666644 48999999999999999
Q ss_pred HHhC--------CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCChHHHHHHHHH
Q 040951 383 CTVF--------LTKKSIWLKAAQLEKTH--GSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL---AGDVPAARDILQE 449 (701)
Q Consensus 383 l~~~--------p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~l~~ 449 (701)
+... +....++...+..+... +++++|+..|++++..+|+++.++..++.++.. .++.++|++.|++
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 9863 34567777777666554 579999999999999999999999998887554 6778899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 450 AYATIPNSEEIWLAAFKLEFE----NRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 450 a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
+++.+|++..++..++..+.. .+++++|..++++++...|. ..++..+|.++...|++++|+..|+++++.+|++
T Consensus 201 al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 280 (472)
T 4g1t_A 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280 (472)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh
Confidence 999999999988877765544 56788999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHH
Q 040951 525 FNLWLMLGQLEERL-------------------GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVL 585 (701)
Q Consensus 525 ~~~~~~la~~~~~~-------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~ 585 (701)
+.++..+|.+|... +.++.|...|++++..+|.+..++..+|.++.. .|++++|+..|
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~ 357 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL---ADQYEEAEYYF 357 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH---hccHHHHHHHH
Confidence 99999999887543 346789999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHH---HHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChH
Q 040951 586 SVARLKNPLNPE---IWLATIRA-ESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPH 661 (701)
Q Consensus 586 ~~a~~~~p~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~ 661 (701)
++++...|++.. ++..++.+ +...|++++|+..|.++++..|++.........+ ...+.+++..+|+++.
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l------~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL------QKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH------HHHHHHHHHHCC-CTT
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH------HHHHHHHHHhCCCCHH
Confidence 999999987653 45666654 4578999999999999999999986433222111 2346678999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccccc
Q 040951 662 VFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWALY 700 (701)
Q Consensus 662 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~~ 700 (701)
++..+|.+|...|++++|+++|++|+++.|.++.++.|.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999999999988774
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-28 Score=253.64 Aligned_cols=286 Identities=12% Similarity=0.015 Sum_probs=204.3
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 040951 381 HACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEI 460 (701)
Q Consensus 381 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~ 460 (701)
..+...|.+..++..++..+...|++++|...|++++..+|.+...+..++.++...|++++|+..+++++..+|++..+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 92 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 34445566666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcC-cHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 461 WLAAFKLEFENR-ELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL 538 (701)
Q Consensus 461 ~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 538 (701)
|..++.++...| ++++|+..|++++...|. +.+|..+|.++...|++++|+..|++++...|++...+..+|.++...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 777777777777 777777777777777776 677777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHhc
Q 040951 539 GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN---------PLNPEIWLATIRAESKH 609 (701)
Q Consensus 539 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~ 609 (701)
|++++|...|++++...|.++.++..++.++.. .|++++|...|++++... |..+.++..+|.++...
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ---NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777 777777777777777765 55556777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 610 GNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 610 g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
|++++|...++++++..|+ ++.++..+|.++...|++++|..+|++++++
T Consensus 250 g~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ------------------------------NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT------------------------------CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred cCHHHHHHHHHHHHhhCcc------------------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 7777777777777777665 3666667777777777777777777777777
Q ss_pred CCCCcccccc
Q 040951 690 DPDTGDFWAL 699 (701)
Q Consensus 690 ~p~~~d~w~~ 699 (701)
+|+++.+|..
T Consensus 300 ~p~~~~~~~~ 309 (330)
T 3hym_B 300 RRDDTFSVTM 309 (330)
T ss_dssp CSCCHHHHHH
T ss_pred CCCchHHHHH
Confidence 7776665543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-27 Score=246.55 Aligned_cols=296 Identities=11% Similarity=0.016 Sum_probs=179.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHH
Q 040951 298 KARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARA 377 (701)
Q Consensus 298 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~ 377 (701)
..+...|.++.+++..+..+...|++++|..+|+++++..|.+. ..+...+..+ ...|++++|+.
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~~~~~----------~~~~~~~~A~~ 77 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA-----SCLPVHIGTL----------VELNKANELFY 77 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----TTHHHHHHHH----------HHHTCHHHHHH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh-----hhHHHHHHHH----------HHhhhHHHHHH
Confidence 34444555566666666666666666666666666666555442 2233333222 55666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 040951 378 IFSHACTVFLTKKSIWLKAAQLEKTHG-SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456 (701)
Q Consensus 378 ~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~ 456 (701)
.+++++..+|++..+|..++.++...| ++++|...|++++..+|.+..+|..+|.++...|++++|+..|++++...|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 78 LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp HHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence 666666666666666666666666666 6666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC---------CCCHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF---------PSFFN 526 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------p~~~~ 526 (701)
+...+..++.++...|++++|...|++++...|. +.++..+|.++...|++++|+..+++++... |..+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 6666666666666666666666666666666665 5666666666666666666666666666654 44455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 606 (701)
++..+|.++...|++++|+..|+++++..|+++.++..+|.++.. .|++++|...|++++..+|+++.++..++.++
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL---MGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH---HTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH---hccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666 66666666666666666666666666666655
Q ss_pred -HhcCC
Q 040951 607 -SKHGN 611 (701)
Q Consensus 607 -~~~g~ 611 (701)
...|+
T Consensus 315 ~~~~g~ 320 (330)
T 3hym_B 315 EMYIGD 320 (330)
T ss_dssp HTTTTC
T ss_pred HHHhCc
Confidence 34444
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=4.9e-28 Score=253.74 Aligned_cols=301 Identities=12% Similarity=0.001 Sum_probs=249.0
Q ss_pred HhcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 040951 367 KKRGSIETARA-IFSHACTVFLTKK----SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVP 441 (701)
Q Consensus 367 ~~~~~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~ 441 (701)
...|++++|+. .|++++...|.++ ..++.+|.++...|++++|...|++++..+|.+..++..+|.++...|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 44577788887 8887777777664 457788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHH----------------HHHHHHHHh
Q 040951 442 AARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWM----------------KSAIVEREL 504 (701)
Q Consensus 442 ~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~----------------~~a~~~~~~ 504 (701)
+|+..|++++..+|++..++..++.++...|++++|+..|++++...|. ...+. .++.++ ..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc
Confidence 8888888888888888888888888888888888888888888887776 33332 355555 88
Q ss_pred CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 505 GNNAEERGFIEEGLKRFPS--FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 505 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
|++++|+.+|++++...|. ++.++..+|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN---GNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH---cCCHHHHH
Confidence 9999999999999999999 899999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHH
Q 040951 583 AVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHV 662 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 662 (701)
..|++++...|+++.++..+|.++...|++++|...|++++...|++.... -...|..+.+
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------~~~~~~~~~~ 332 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR-------------------GEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-------------------------CCCCCHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc-------------------ccccchhhHH
Confidence 999999999999999999999999999999999999999999988642110 0112445889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 663 FAAVAKLFWHDRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 663 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 690 (701)
+..+|.++...|++++|..+++++++..
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 9999999999999999999999888754
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.4e-27 Score=250.29 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=259.5
Q ss_pred HHHcCChhHHHH-HHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 317 EEANGNTSMVGK-IIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLK 395 (701)
Q Consensus 317 ~~~~g~~~~a~~-~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 395 (701)
+...|++++|.. .|++++...|.++. .....|+..+..+ ...|++++|+..|++++..+|++..+|..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~----------~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 103 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPL-RDHPQPFEEGLRR----------LQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTT-TTCSSHHHHHHHH----------HHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcc-cchHHHHHHHHHH----------HHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 344578888888 88888876655431 1234566666554 89999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH-------------
Q 040951 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL------------- 462 (701)
Q Consensus 396 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~------------- 462 (701)
++.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|++...+.
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccH
Confidence 9999999999999999999999999999999999999999999999999999999999998777664
Q ss_pred ---HHHHHHHHcCcHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 463 ---AAFKLEFENRELERARMLLAKARDMGGT---ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEE 536 (701)
Q Consensus 463 ---~la~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 536 (701)
.++.++ ..|++++|+..|++++...|. +.++..+|.++...|++++|+..|++++...|+++.++..+|.++.
T Consensus 184 ~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 184 SKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262 (368)
T ss_dssp --CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 355555 899999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHH
Q 040951 537 RLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN-----------PEIWLATIRA 605 (701)
Q Consensus 537 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-----------~~~~~~l~~~ 605 (701)
..|++++|+..|++++...|.++.++..+|.++.. .|++++|+..|++++...|++ +.+|..++.+
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN---LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999988 8999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhC
Q 040951 606 ESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~ 626 (701)
+...|++++|..++.+++...
T Consensus 340 ~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 340 LSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHhCChHhHHHhHHHHHHHH
Confidence 999999999999998877653
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-26 Score=251.20 Aligned_cols=363 Identities=14% Similarity=0.044 Sum_probs=273.8
Q ss_pred hccChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCccc---CCHHHHHHH
Q 040951 285 RLETYGVARSVLNKARKK---------LPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVV---IDRDTWMKE 352 (701)
Q Consensus 285 ~l~~~~~A~~~l~~a~~~---------~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~---~~~~~w~~~ 352 (701)
..|++++|+..|+++++. .|.....|..+|.++...|++++|...+++++...+..... .....+...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 347888888888888765 57778899999999999999999999999999876653321 123344333
Q ss_pred HHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 040951 353 AEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEK---THGSRESLIALLRKAVTYFPQAEVLWLM 429 (701)
Q Consensus 353 a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~ 429 (701)
+... .....+++++|+.+|+++++.+|+++.++..++.+.. ..++.++|+..|++++..+|.+..++..
T Consensus 143 g~~~--------~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 143 GWTR--------LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHH--------HHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHH--------HHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 3211 2245678999999999999999999999999988755 4577789999999999999999999888
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 040951 430 GAKEKWL----AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVEREL 504 (701)
Q Consensus 430 ~a~~~~~----~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~ 504 (701)
++..+.. .|++++|+..|++++..+|.+..++..++.++...|++++|+..|+++++..|+ ..++..+|.++...
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 8766554 567899999999999999999999999999999999999999999999999999 88898888876543
Q ss_pred -------------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH---HH
Q 040951 505 -------------------GNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP---LW 562 (701)
Q Consensus 505 -------------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 562 (701)
+.++.|+..|++++..+|.+..++..+|.++...|++++|+..|++++...|++.. ++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34678999999999999999999999999999999999999999999999887643 45
Q ss_pred HHHHHHH-hhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 040951 563 YSLANLE-EKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641 (701)
Q Consensus 563 ~~la~~~-~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~ 641 (701)
..++.+. .. .|++++|+..|+++++..|++..... ....+..++++++..+|+++..|..++.+..
T Consensus 375 ~~~~~~~~~~---~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 375 LRYGNFQLYQ---MKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHHHT---SSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6677654 46 89999999999999999998864322 2234556778888888888888877665443
Q ss_pred C----ccchhHHHHHHHhcCCChHHHHHHHH
Q 040951 642 H----HDRKSKGKDALVKSDRDPHVFAAVAK 668 (701)
Q Consensus 642 ~----~~~~~~~~~al~~~p~~~~~~~~lg~ 668 (701)
. ......+++||+..|.+|.+...+|.
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHCC-------------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 2 44455678888888888888777663
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=2.8e-27 Score=247.90 Aligned_cols=292 Identities=13% Similarity=-0.002 Sum_probs=246.0
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040951 377 AIFSHACTVFLTKK----SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYA 452 (701)
Q Consensus 377 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~ 452 (701)
..+...+...|.++ ..|+.+|..+...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444444444 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHH----------HHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 453 TIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWM----------KSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 453 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~----------~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
.+|++..+|..++.++...|++++|+..|++++...|. ...+. .++.++...|++++|+.+|++++...
T Consensus 128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998876 44443 34888899999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 522 PS--FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 522 p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
|. ++.++..+|.++...|++++|+..|+++++..|+++.+|..+|.++.. .|++++|+..|++++..+|+++.+|
T Consensus 208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN---GDRSEEAVEAYTRALEIQPGFIRSR 284 (365)
T ss_dssp CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCchHHH
Confidence 99 899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKA 679 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 679 (701)
..+|.++...|++++|...|+++++..|++...- .......+..++..+|.++...|+.+.|
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ------------------QVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------------------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc------------------ccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999999999999999999998742110 0000112478899999999999999999
Q ss_pred HHHHHHHHHh
Q 040951 680 RNWFNKAVSL 689 (701)
Q Consensus 680 ~~~~~~al~~ 689 (701)
....++.+..
T Consensus 347 ~~~~~~~l~~ 356 (365)
T 4eqf_A 347 QAANLGDLDV 356 (365)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHHhhHHH
Confidence 9887775443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.2e-26 Score=243.20 Aligned_cols=266 Identities=16% Similarity=0.097 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 040951 346 RDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEV 425 (701)
Q Consensus 346 ~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 425 (701)
...|+..+..+ ...|++++|+.+|++++..+|++..+|..++.++...|++++|+..|++++..+|.+..
T Consensus 65 ~~~~~~~~~~~----------~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 134 (365)
T 4eqf_A 65 WPGAFEEGLKR----------LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK 134 (365)
T ss_dssp CTTHHHHHHHH----------HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHH----------HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 44577777655 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHcCcHHHHHHHHHHHHhcCCC---HH
Q 040951 426 LWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAA----------FKLEFENRELERARMLLAKARDMGGT---ER 492 (701)
Q Consensus 426 ~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~a~~~~p~---~~ 492 (701)
+|..+|.++...|++++|+..|++++..+|++..++..+ +.++...|++++|+.+|++++...|. +.
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 214 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence 999999999999999999999999999998866666544 88999999999999999999999986 88
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhh
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKR 572 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 572 (701)
++..+|.++...|++++|+.+|+++++..|+++.+|..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 293 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN- 293 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 573 NGLNGLSKARAVLSVARLKNPL------------NPEIWLATIRAESKHGNKKEADSFIAKALQ 624 (701)
Q Consensus 573 ~~~g~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 624 (701)
.|++++|+..|++++...|+ +..+|..++.++...|+.+.+..+..+.+.
T Consensus 294 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 294 --LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp --HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred --CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999887 357899999999999999988877665433
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=8.1e-26 Score=232.34 Aligned_cols=282 Identities=13% Similarity=-0.004 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE 470 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~ 470 (701)
..++.+|..+...|++++|...|++++..+|.+..++..+|.++...|++++|+..|++++..+|++..++..++.++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcHHHHHHHHHHHHhcCCC-HHHHHHH--------------HH-HHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 471 NRELERARMLLAKARDMGGT-ERVWMKS--------------AI-VERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQL 534 (701)
Q Consensus 471 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 534 (701)
.|++++|+..+++++...|. ...+..+ +. ++...|++++|+.++++++...|.++.++..+|.+
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 88888888888888888777 4444444 44 46778999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 040951 535 EERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKE 614 (701)
Q Consensus 535 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 614 (701)
+...|++++|+..+++++...|.++.++..+|.++.. .|++++|+..|++++...|+++.+|..++.++...|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN---GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 615 ADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDT 693 (701)
Q Consensus 615 A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 693 (701)
|...+++++...|.+...... .....++.++..+|.++...|++++|...++++++..|+.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGE------------------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHhCCcccccccc------------------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 999999999998862100000 0000037789999999999999999999999998877654
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=2.1e-25 Score=229.19 Aligned_cols=269 Identities=15% Similarity=0.120 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 040951 347 DTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVL 426 (701)
Q Consensus 347 ~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 426 (701)
..|+..+..+ ...|++++|+.+|++++..+|++..+|..++.++...|++++|...|++++..+|.+..+
T Consensus 22 ~~~~~~a~~~----------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 91 (327)
T 3cv0_A 22 ENPMEEGLSM----------LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 91 (327)
T ss_dssp SCHHHHHHHH----------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHH----------HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHH
Confidence 4566666544 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCcHHHHHHHHHHHHhcCCC-
Q 040951 427 WLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAA--------------FK-LEFENRELERARMLLAKARDMGGT- 490 (701)
Q Consensus 427 ~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~a~~~~p~- 490 (701)
+..+|.++...|++++|+..|++++...|.+...+..+ +. ++...|++++|+..+++++...|.
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999988777766 55 578889999999999999999998
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
..++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..|+++++..|.+..++..++.++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPL------------NPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
. .|++++|+..|++++...|+ ++.+|..++.++...|++++|..+++++++..|+
T Consensus 252 ~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 252 N---MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp H---TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred H---hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 9 99999999999999999999 7899999999999999999999999988877654
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=1.5e-22 Score=220.78 Aligned_cols=344 Identities=10% Similarity=0.014 Sum_probs=287.1
Q ss_pred cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCc
Q 040951 287 ETYGVARSVLNKARKKLPKERAIWIAAAKLEEA----NGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSD 362 (701)
Q Consensus 287 ~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~----~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~ 362 (701)
+++++|...|+++.+. .++.+++.+|.++.. .+++++|...|+++.+. . ....+..++..+
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~-----~~~a~~~Lg~~y------ 121 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G-----LPQAQQNLGVMY------ 121 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T-----CHHHHHHHHHHH------
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C-----CHHHHHHHHHHH------
Confidence 5788899999988876 578889999999988 88899999999998763 1 245566666544
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 040951 363 AEECKK----RGSIETARAIFSHACTVFLTKKSIWLKAAQLEKT----HGSRESLIALLRKAVTYFPQAEVLWLMGAKEK 434 (701)
Q Consensus 363 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 434 (701)
.. .+++++|+..|+++... +++.++..++.++.. .+++++|+..|++++.. .++.++..++.++
T Consensus 122 ----~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 122 ----HEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMY 193 (490)
T ss_dssp ----HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred ----HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 55 77899999999998775 578889999999887 78899999999999876 5788899999998
Q ss_pred HH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---
Q 040951 435 WL----AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE----NRELERARMLLAKARDMGGTERVWMKSAIVERE--- 503 (701)
Q Consensus 435 ~~----~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~--- 503 (701)
.. .+++++|+.+|+++.+. .++.++..++.++.. .+++++|+..|+++... ..+..++.++.++..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYILEQGLA 270 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCC
Confidence 87 78999999999998875 457788888988886 78999999999998875 347788888888887
Q ss_pred -hCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCC-
Q 040951 504 -LGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL-----GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN- 576 (701)
Q Consensus 504 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g- 576 (701)
.+++++|+.+|+++.+. .++.+++.+|.++... +++++|+..|+++++. .++.++..++.++.. .|
T Consensus 271 ~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~---~g~ 343 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR---LGS 343 (490)
T ss_dssp SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH---SCC
T ss_pred CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh---CCC
Confidence 78999999999998765 5678889999999887 8999999999998875 467888999999887 66
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHH
Q 040951 577 --GLSKARAVLSVARLKNPLNPEIWLATIRAESK----HGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGK 650 (701)
Q Consensus 577 --~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~ 650 (701)
++++|+.+|+++.+. .++.++..+|.++.. .+++++|...|+++++..
T Consensus 344 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------------------------ 397 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG------------------------ 397 (490)
T ss_dssp HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------
T ss_pred cccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC------------------------
Confidence 788999999999886 578899999999988 889999999999988753
Q ss_pred HHHHhcCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC---Ccccc
Q 040951 651 DALVKSDRDPHVFAAVAKLFWH----DRKVDKARNWFNKAVSLDPD---TGDFW 697 (701)
Q Consensus 651 ~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~---~~d~w 697 (701)
++.++..+|.+|.. .+++++|..+|++|++.+|+ +..++
T Consensus 398 --------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 398 --------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp --------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHH
Confidence 37888999999998 89999999999999999854 55444
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=1.7e-25 Score=233.31 Aligned_cols=250 Identities=11% Similarity=0.087 Sum_probs=215.7
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCCC-HHHH
Q 040951 417 VTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRE-LERARMLLAKARDMGGT-ERVW 494 (701)
Q Consensus 417 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~p~-~~~~ 494 (701)
+..+|.+..+|..++.++...|++++|+..|++++..+|++..+|..++.++...|+ +++|+..|++++...|. ..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 445667777888888888888888888888888888888888888888888888886 88888888888888887 8888
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcc
Q 040951 495 MKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574 (701)
Q Consensus 495 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 574 (701)
+.+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++.+|++..+|..+|.++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~--- 246 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN--- 246 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCH-HHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccch
Q 040951 575 LNGL-SKA-----RAVLSVARLKNPLNPEIWLATIRAESKHG--NKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRK 646 (701)
Q Consensus 575 ~g~~-~~A-----~~~~~~a~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~ 646 (701)
.+.. ++| +..|++++..+|++..+|..++.++...| ++++|...+.++ +..|+
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~------------------ 307 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS------------------ 307 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC------------------
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC------------------
Confidence 5555 777 58999999999999999999999999888 688888888776 55554
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HHhCCCCccccccc
Q 040951 647 SKGKDALVKSDRDPHVFAAVAKLFWHDR--------K-VDKARNWFNKA-VSLDPDTGDFWALY 700 (701)
Q Consensus 647 ~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~d~w~~~ 700 (701)
++.++..+|.+|...| + +++|+.+|+++ ++++|.....|.++
T Consensus 308 ------------~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 308 ------------SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 6889999999999874 3 59999999999 99999999998753
No 29
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1e-24 Score=222.52 Aligned_cols=271 Identities=12% Similarity=0.122 Sum_probs=236.0
Q ss_pred CCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCh-------HHHH
Q 040951 387 LTKKSIWLKAAQLEKTH----GSR----ESLIALLRKAVTYFPQAEVLWLMGAKEKWL-------AGDV-------PAAR 444 (701)
Q Consensus 387 p~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~ 444 (701)
|.....|..++.++... ++. +.|...|++++..+|.++.+|+.++.++.. .|++ ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 44567899999988775 343 688999999999999999999999999874 5886 9999
Q ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HH-HHHHHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 445 DILQEAYA-TIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ER-VWMKSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 445 ~~l~~a~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
.+|++++. .+|++..+|..++.++...|++++|+.+|++++...|. +. +|..++.++...|++++|+.+|+++++..
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999 69999999999999999999999999999999999998 65 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh---CC-CCH
Q 040951 522 PSFFNLWLMLGQLEER-LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK---NP-LNP 596 (701)
Q Consensus 522 p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~---~p-~~~ 596 (701)
|.+..+|...+.+... .|++++|+.+|+++++.+|+++.+|..++.++.. .|++++|+.+|++++.. .| +..
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 9999999888877554 7999999999999999999999999999999999 99999999999999996 45 478
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHH
Q 040951 597 EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAK 668 (701)
Q Consensus 597 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~ 668 (701)
.+|..++.++...|+.+.|..++.++++.+|++............ .+.+.+.|+++..+..+|.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r--------~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR--------YKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTT--------TCBTTBCSSCHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHHHHH--------HHhcccCCCCHHHHHhcCC
Confidence 899999999999999999999999999999986532211111000 0345577888888887764
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=8.7e-25 Score=227.88 Aligned_cols=252 Identities=11% Similarity=0.041 Sum_probs=236.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHH
Q 040951 382 ACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGD-VPAARDILQEAYATIPNSEEI 460 (701)
Q Consensus 382 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~l~~a~~~~p~~~~~ 460 (701)
++..+|++..+|..++.++...|++++|+..|++++..+|.+..+|..+|.++...|+ +++|+..|++++..+|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4566788899999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER-L 538 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~ 538 (701)
|..++.++...|++++|+..|++++...|. ..+|+.+|.++...|++++|+..|++++..+|++..+|..+|.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999999 5
Q ss_pred CCHHHH-----HHHHHHHhhhCCCCHHHHHHHHHHHhhhccCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-
Q 040951 539 GHLKEA-----KEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN--GLSKARAVLSVARLKNPLNPEIWLATIRAESKHG- 610 (701)
Q Consensus 539 ~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g- 610 (701)
|..++| +..|++++..+|++..+|..++.++.. .| ++++|+..+.++ ..+|+++.++..++.++...|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~---~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD---RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT---TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc---cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 655888 599999999999999999999999998 88 699999999998 889999999999999999874
Q ss_pred -------C-HHHHHHHHHHH-HHhCCCCHHHHHHHH
Q 040951 611 -------N-KKEADSFIAKA-LQKCPNSGILWAELI 637 (701)
Q Consensus 611 -------~-~~~A~~~~~~a-l~~~p~~~~l~~~~~ 637 (701)
+ +++|+.+|+++ ++.+|.....|...+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 2 58999999999 999998777776544
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=8.7e-24 Score=211.27 Aligned_cols=251 Identities=13% Similarity=0.067 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHH
Q 040951 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAI 499 (701)
Q Consensus 424 ~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~ 499 (701)
+..++.+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..|++++...++ ..+|..+|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 4567788888888999999999999999999988888999999999999999999999999984333 556899999
Q ss_pred HHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHH
Q 040951 500 VERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLS 579 (701)
Q Consensus 500 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~ 579 (701)
++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|.++.+|..+|..... .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY---NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH---TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999944444 56999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhc
Q 040951 580 KARAVLSVARLKNPLNPEIWLATIRAESKHGN---KKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKS 656 (701)
Q Consensus 580 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~ 656 (701)
+|+..|++++..+|+++..+..++.++...|+ +++|...|+++++.....+..-.
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------- 217 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK---------------------- 217 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH----------------------
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch----------------------
Confidence 99999999999999999999999999999998 88899999999988632110000
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 040951 657 DRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFWAL 699 (701)
Q Consensus 657 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w~~ 699 (701)
+....++..+|.++...|++++|+.+|+++++++|+++.+|..
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 0014688899999999999999999999999999999988754
No 32
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.92 E-value=1.3e-22 Score=219.02 Aligned_cols=374 Identities=13% Similarity=0.097 Sum_probs=226.1
Q ss_pred HHHhhhc-HHHHHHHHHHHhhhCCCCHHHHHHHHhhcCcchHHHHHHHHHHhCCCcHHHHHHHHHcccC----HHHHHHH
Q 040951 161 LEELAKE-EAAARKLITKGCNMCPKNEDVWLEACRLARPDEAKGVVAKGVRQIPKSVRLWLQAAELDHD----KANKSRV 235 (701)
Q Consensus 161 l~~~~g~-~~~A~~~~~~~~~~~P~~~~~wl~~~~l~~~~~A~~~l~~al~~~P~~~~lw~~~~~le~~----~~~a~~~ 235 (701)
.|+..|+ +..||++++.++...|. ...+.++.+|++++...| |+.+|..++.++.. .+..+.+
T Consensus 3 ~e~~~~~~i~~aR~vyer~l~~~P~-----------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 3 AEEKMGVELSSPSAIMEHARRLYMS-----------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ---------CCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHH
T ss_pred hHHHcCcchHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHH
Confidence 4566784 89999999999998887 556788889999998888 88899888887752 2334567
Q ss_pred HHHHHHh---cCCCHHHHHHHHhhc--------CHHHHHHHHHHHHHHCCCC-H-HHHHHHHhccChHHHHHHHHHHHHh
Q 040951 236 LRMALDE---IPDSVRLWKALVEIS--------SEEEARILLHRAVECCPLD-V-ELWLALARLETYGVARSVLNKARKK 302 (701)
Q Consensus 236 l~kal~~---~P~~~~l~~~~~~l~--------~~~~A~~~l~~a~~~~P~~-~-~l~~~l~~l~~~~~A~~~l~~a~~~ 302 (701)
|++|+.. +|.+..+|..|+.++ +.+.++.+|++++. .|.. . .+|..+..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~----------------- 132 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFEN----------------- 132 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHH-----------------
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHH-----------------
Confidence 7777764 567777777777653 24455556666555 2322 1 23333333
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHH
Q 040951 303 LPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHA 382 (701)
Q Consensus 303 ~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~a 382 (701)
++...+ ...+..++... .+.+..|+.+|+.+
T Consensus 133 -------------fE~~~~-~~~~~~~~~~~-----------------------------------~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 133 -------------FELELN-KITGKKIVGDT-----------------------------------LPIFQSSFQRYQQI 163 (493)
T ss_dssp -------------HHHHHC-HHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHH
T ss_pred -------------HHHHhc-cccHHHHHHHH-----------------------------------hHHHHHHHHHHHHH
Confidence 222211 11111111110 01122233333333
Q ss_pred HHhCCC-CHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 040951 383 CTVFLT-KKSIWLKAAQLEKTHG--S-----RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI 454 (701)
Q Consensus 383 l~~~p~-~~~~~~~la~~~~~~g--~-----~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~ 454 (701)
....|. +...|..++.++...+ . .+.+..+|++++..+|..+.+|++++..+...|+.+.|+.+|++++..
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~- 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM- 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 322221 3344555554444321 0 223444555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHH---------hcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 455 PNSEEIWLAAFKLEFENRELERARMLLAKAR---------DMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 455 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~---------~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
|.+..+|+.++.... .++. -..+++... ...+. ..+|..++.++.+.++.+.|+.+|+++ ...+..
T Consensus 243 P~~~~l~~~y~~~~e-~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~ 318 (493)
T 2uy1_A 243 SDGMFLSLYYGLVMD-EEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVG 318 (493)
T ss_dssp CCSSHHHHHHHHHTT-CTHH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCC
T ss_pred CCcHHHHHHHHhhcc-hhHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCC
Confidence 555555554443310 0100 000110000 00011 578888999888888899999999999 433335
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 525 FNLWLMLGQLEERLG-HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATI 603 (701)
Q Consensus 525 ~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 603 (701)
..+|...+.+....+ +.+.|+.+|+.+++..|+++..|..++.++.. .|+.+.|+.+|+++ +.+..+|..+.
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~---~~~~~~aR~l~er~----~k~~~lw~~~~ 391 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR---IGDEENARALFKRL----EKTSRMWDSMI 391 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHS----CCBHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH----HHHHHHHHHHH
Confidence 678888888776665 69999999999999999998889889998888 89999999999997 45678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 040951 604 RAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 604 ~~~~~~g~~~~A~~~~~~al~~ 625 (701)
.++...|+.+.+..+++++++.
T Consensus 392 ~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 392 EYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988864
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=1.3e-20 Score=205.59 Aligned_cols=338 Identities=13% Similarity=-0.001 Sum_probs=291.2
Q ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHh--------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChh
Q 040951 257 SSEEEARILLHRAVECCPLDVELWLALAR--------LETYGVARSVLNKARKKLPKERAIWIAAAKLEEA----NGNTS 324 (701)
Q Consensus 257 ~~~~~A~~~l~~a~~~~P~~~~l~~~l~~--------l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~----~g~~~ 324 (701)
.+++.|...|+++.+. .++..+..++. .+++++|...|+++.+. .++.++..+|.++.. .++++
T Consensus 57 ~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 4889999999999876 45565555443 36899999999999875 578999999999998 88999
Q ss_pred HHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 325 MVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKK----RGSIETARAIFSHACTVFLTKKSIWLKAAQLE 400 (701)
Q Consensus 325 ~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 400 (701)
+|...|+++.+. . ....+..++..+ .. .+++++|+..|+++++. .++.++..++.++
T Consensus 133 ~A~~~~~~a~~~--~-----~~~a~~~Lg~~y----------~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 133 ESVKWFRLAAEQ--G-----RDSGQQSMGDAY----------FEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHHHHHT--T-----CHHHHHHHHHHH----------HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--C-----CHHHHHHHHHHH----------HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 999999999874 1 245666666544 55 78999999999999986 5789999999999
Q ss_pred HH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 040951 401 KT----HGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL----AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE-- 470 (701)
Q Consensus 401 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~-- 470 (701)
.. .+++++|...|++++.. .++.++..++.++.. .+++++|+.+|+++.+. .++.++..++.++..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCC
Confidence 98 89999999999999875 568889999999987 88999999999999876 467889999999998
Q ss_pred --cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---C
Q 040951 471 --NRELERARMLLAKARDMGGTERVWMKSAIVEREL-----GNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLG---H 540 (701)
Q Consensus 471 --~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~ 540 (701)
.+++++|+..|+++.+. ..+.+++.++.++... +++++|+..|+++++. .++.+++.+|.++...| +
T Consensus 270 ~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCccc
Confidence 89999999999999875 3478899999999887 8999999999999986 45789999999998866 8
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHH
Q 040951 541 LKEAKEAYQSGCNQCPNCIPLWYSLANLEEK-RNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESK----HGNKKEA 615 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A 615 (701)
+++|+.+|+++++. .++.+++.++.++.. .+..+++++|+.+|+++.... ++.++..+|.++.. .+++++|
T Consensus 347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999999886 678999999999875 112479999999999999864 68999999999998 8999999
Q ss_pred HHHHHHHHHhCCC
Q 040951 616 DSFIAKALQKCPN 628 (701)
Q Consensus 616 ~~~~~~al~~~p~ 628 (701)
...|+++++..|+
T Consensus 423 ~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 423 WAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCC
Confidence 9999999999854
No 34
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.92 E-value=6.3e-22 Score=213.77 Aligned_cols=372 Identities=13% Similarity=0.126 Sum_probs=274.5
Q ss_pred chhhh-cHHHHHHHHHH-HHHHHHHHhhhcHHHHHHHHHHHhhhCCCCHHHHHHHHhhc-----CcchHHHHHHHHHHh-
Q 040951 140 NSELR-DILKARKIVRA-IQAARLEELAKEEAAARKLITKGCNMCPKNEDVWLEACRLA-----RPDEAKGVVAKGVRQ- 211 (701)
Q Consensus 140 ~~~~~-d~~~ar~ll~~-i~~arl~~~~g~~~~A~~~~~~~~~~~P~~~~~wl~~~~l~-----~~~~A~~~l~~al~~- 211 (701)
+...| ++..||.+++. +..-=+ |+++.++.+|++++..+| |+++|+.++... ..+..+.+|+.|+..
T Consensus 4 e~~~~~~i~~aR~vyer~l~~~P~----~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 4 EEKMGVELSSPSAIMEHARRLYMS----KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp --------CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred HHHcCcchHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 45677 59999999997 332211 789999999999999999 999999999864 234678899999986
Q ss_pred --CCCcHHHHHHHHHccc-------CHHHHHHHHHHHHHhcCC-CH-HHHHHHHhhc---CHHHHHHHHHHHHHHCCCCH
Q 040951 212 --IPKSVRLWLQAAELDH-------DKANKSRVLRMALDEIPD-SV-RLWKALVEIS---SEEEARILLHRAVECCPLDV 277 (701)
Q Consensus 212 --~P~~~~lw~~~~~le~-------~~~~a~~~l~kal~~~P~-~~-~l~~~~~~l~---~~~~A~~~l~~a~~~~P~~~ 277 (701)
+|.+..+|..++.++. +.+.++++|++||.. |. +. .+|..|...+ +...+..++....
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~------- 150 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTL------- 150 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-------
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHh-------
Confidence 7899999999999864 356799999999994 54 33 3888888765 3333333322211
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHH
Q 040951 278 ELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAE 357 (701)
Q Consensus 278 ~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e 357 (701)
..+..|+.+|+.+....|. . ....|..++.+.+
T Consensus 151 ---------~~y~~ar~~y~~~~~~~~~----------------------------------~----s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 151 ---------PIFQSSFQRYQQIQPLIRG----------------------------------W----SVKNAARLIDLEM 183 (493)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHT----------------------------------C----SHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHhh----------------------------------c----cHHHHHHHHHHHh
Confidence 2344455555444432211 0 1234555554431
Q ss_pred HcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 040951 358 KAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLA 437 (701)
Q Consensus 358 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~ 437 (701)
..+... ...+....+..+|++++...|..+.+|+.++.++...|+.+.|..+|++++.. |.+..+|+.++.... .
T Consensus 184 ~~~~~~---~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~ 258 (493)
T 2uy1_A 184 ENGMKL---GGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-E 258 (493)
T ss_dssp TCTTCC---CHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-C
T ss_pred cCCccC---cchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-h
Confidence 100000 00001355778999999999999999999999999999999999999999999 999999988777621 1
Q ss_pred CChHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 040951 438 GDVPAARDILQEAYAT-------------IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG-TERVWMKSAIVERE 503 (701)
Q Consensus 438 g~~~~A~~~l~~a~~~-------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~a~~~~~ 503 (701)
++. ++++... .+....+|..++.++...++.+.|+.+|+++ ...+ +..+|...+.+...
T Consensus 259 ---~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 259 ---EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp ---THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHH
T ss_pred ---hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHH
Confidence 111 2222211 1123468999999999999999999999999 4332 37899988988877
Q ss_pred hC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 504 LG-NNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 504 ~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
.+ +.+.|+.+|+.+++.+|+++.+|..++++....|+.+.|+.+|+++ +.+..+|..+..++.. .|+.+.++
T Consensus 332 ~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~---~G~~~~~r 404 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFM---VGSMELFR 404 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHH---HSCHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHH---CCCHHHHH
Confidence 66 6999999999999999999999999999999999999999999998 4578999999999999 99999999
Q ss_pred HHHHHHHH
Q 040951 583 AVLSVARL 590 (701)
Q Consensus 583 ~~~~~a~~ 590 (701)
.++++++.
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
No 35
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=4.6e-23 Score=210.28 Aligned_cols=272 Identities=15% Similarity=0.164 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHhcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------H
Q 040951 346 RDTWMKEAEIAEKAGSDAEECKKRGSI----ETARAIFSHACTVFLTKKSIWLKAAQLEKT-------HGSR-------E 407 (701)
Q Consensus 346 ~~~w~~~a~~~e~~~~~a~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~ 407 (701)
...|..++.+..... ...++. ++|+.+|++++..+|.++.+|..++.++.. .|++ +
T Consensus 8 ~~~W~~yi~~E~~~~------~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 8 VDMWKKYIQWEKSNP------LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHTCT------TCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc------ccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 467888777652110 011233 789999999999999999999999999874 5885 8
Q ss_pred HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCcHHHHHHHHHHHH
Q 040951 408 SLIALLRKAVT-YFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEE-IWLAAFKLEFENRELERARMLLAKAR 485 (701)
Q Consensus 408 ~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~ 485 (701)
+|+..|++++. .+|++..+|..++.++...|++++|+.+|+++++..|.+.. +|..++.++...|++++|+.+|++++
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999 69999999999999999999999999999999999999886 99999999999999999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHH-hCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---CC-CCH
Q 040951 486 DMGGT-ERVWMKSAIVERE-LGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ---CP-NCI 559 (701)
Q Consensus 486 ~~~p~-~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p-~~~ 559 (701)
...|. ..+|...+.+... .|++++|+.+|+++++.+|+++.+|..++.++...|++++|+.+|++++.. .| .+.
T Consensus 162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 99887 8888877777554 699999999999999999999999999999999999999999999999996 44 478
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 040951 560 PLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIK 638 (701)
Q Consensus 560 ~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~ 638 (701)
.+|..++.++.. .|+++.|..+++++++.+|+++..... +.+..+ .+.+...|.++.....+++
T Consensus 242 ~l~~~~~~~~~~---~g~~~~a~~~~~~a~~~~p~~~~~~~~-~~~~~r-----------~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 242 EIWARFLAFESN---IGDLASILKVEKRRFTAFREEYEGKET-ALLVDR-----------YKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHHHHHHHHHH---HSCHHHHHHHHHHHHHHTTTTTSSCHH-HHHHTT-----------TCBTTBCSSCHHHHHTTTC
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHHcccccccchH-HHHHHH-----------HHhcccCCCCHHHHHhcCC
Confidence 899999999999 999999999999999999986533211 222111 1456788888876655443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-22 Score=201.06 Aligned_cols=227 Identities=15% Similarity=-0.002 Sum_probs=210.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHH
Q 040951 389 KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS-------EEIW 461 (701)
Q Consensus 389 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~-------~~~~ 461 (701)
....|..+|.++...|++++|+..|++++..+ .++.++..+|.++...|++++|+..|++++...|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45678899999999999999999999999998 889999999999999999999999999999988876 6889
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 040951 462 LAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHL 541 (701)
Q Consensus 462 ~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 541 (701)
..++.++...|++++|+..|++++...|... ++...|++++|+..+++++..+|.++.++..+|.++...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999988843 455667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 542 KEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 542 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
++|+..|++++...|.++.++..+|.++.. .|++++|+..|++++..+|+++.+|..+|.++...|++++|...|++
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAK---LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 040951 622 ALQKC 626 (701)
Q Consensus 622 al~~~ 626 (701)
+++..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99998
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.7e-22 Score=203.76 Aligned_cols=256 Identities=12% Similarity=0.009 Sum_probs=229.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTK-KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAA 443 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A 443 (701)
..+..|+|..|+..++++....|++ .+....++..+...|+++.|+..++. .+|....++..++..+...|+.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3478999999999999888888877 45778889999999999999988865 2566677888899999999999999
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 040951 444 RDILQEAYAT--IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKR 520 (701)
Q Consensus 444 ~~~l~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 520 (701)
++.+++++.. +|+++.+++.+|.++...|++++|+..|++ |. ..++..++.++...|++++|+..|++++..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 9999999976 599999999999999999999999999998 55 899999999999999999999999999999
Q ss_pred CCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 521 FPSFFNLWLMLG--QLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 521 ~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
+|++....+..+ .++...|++++|..+|++++..+|+++.++..+|.++.. .|++++|...|++++..+|+++++
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA---QGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999865544433 445566899999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCHH
Q 040951 599 WLATIRAESKHGNKKE-ADSFIAKALQKCPNSGI 631 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~-A~~~~~~al~~~p~~~~ 631 (701)
+..+|.++...|+..+ +..+++++++..|+++.
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999976 57899999999998643
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=7.2e-23 Score=204.57 Aligned_cols=237 Identities=12% Similarity=-0.030 Sum_probs=153.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCChHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA----EVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~ 442 (701)
...|++++|+..|+++++.+|++..+|..++.++...|++++|+..+++++. .|.+ ..++..+|.++...|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 6667777777777777777777666777777777777777777777777766 3332 2336666777767777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
|+..|++++..+|++..++..++.++...|++++|+..|++++...|. +.+|..+|......+++++|+..|+++++.+
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777777777777766666666777776667777777766666666666 6666666633344456666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhC---CCC-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 040951 522 PSFFNLWLMLGQLEERLGH---LKEAKEAYQSGCNQC---PNC-----IPLWYSLANLEEKRNGLNGLSKARAVLSVARL 590 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~ 590 (701)
|++...+..+|.++...|+ +++|+..|+++++.. |+. ..++..+|.++.. .|++++|+..|++++.
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI---NRDKVKADAAWKNILA 249 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Confidence 6666666666666666666 666666666666654 331 2456666666666 6666666666666666
Q ss_pred hCCCCHHHHHHHHHHHH
Q 040951 591 KNPLNPEIWLATIRAES 607 (701)
Q Consensus 591 ~~p~~~~~~~~l~~~~~ 607 (701)
.+|+++.++..++.+..
T Consensus 250 ~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 250 LDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HCTTCHHHHHHHC----
T ss_pred cCccHHHHHHHhhhhhc
Confidence 66666666665555443
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.6e-22 Score=203.80 Aligned_cols=258 Identities=11% Similarity=-0.001 Sum_probs=223.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHH
Q 040951 398 QLEKTHGSRESLIALLRKAVTYFPQA-EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELER 476 (701)
Q Consensus 398 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~ 476 (701)
.-....|++..|+..+++.....|.+ ......+++.+...|+++.|+..++. .+|.+..++..++.++...++.++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34456899999999999887777776 45778889999999999999998865 255556677789999999999999
Q ss_pred HHHHHHHHHhc--CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 477 ARMLLAKARDM--GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 477 A~~~~~~a~~~--~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
|++.+++++.. .|+ +.+++.+|.++...|++++|+..|++ |.++.++..+|.++...|++++|+..|+++++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999875 587 89999999999999999999999988 89999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHH--HHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 040951 554 QCPNCIPLWYSLA--NLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 554 ~~p~~~~~~~~la--~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 631 (701)
.+|++....+..+ .++.. .|++++|+..|++++..+|+++.+|..+|.++...|++++|...|++++..+|++
T Consensus 159 ~~p~~~~~~l~~a~~~l~~~---~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-- 233 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAAG---GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-- 233 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred hCcCcHHHHHHHHHHHHHhC---chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Confidence 9999875544433 44556 7899999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhCCCCccc
Q 040951 632 LWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDK-ARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 632 l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~d~ 696 (701)
+.++..+|.++...|+.++ +..+++++++++|+++.+
T Consensus 234 ----------------------------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 234 ----------------------------PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ----------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 7777788888888888765 567888888888877654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=7.7e-23 Score=197.02 Aligned_cols=210 Identities=17% Similarity=0.107 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 387 LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFK 466 (701)
Q Consensus 387 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~ 466 (701)
|.+..++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55666677777777777777777777777777777777777777777777777777777777777777777777776666
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040951 467 LEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKE 546 (701)
Q Consensus 467 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 546 (701)
++...+.. .+. .....|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 82 ~~~~~~~~-------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 82 AYVALYRQ-------------AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHT-------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhhh-------------hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 66655000 000 00112566666666666666666666666666666666666666666
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 547 AYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 547 ~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
.|+++++.+ +++.++..+|.++.. .|++++|+..|++++..+|+++.++..++.++...|++++|+..|+++
T Consensus 140 ~~~~al~~~-~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 140 SLKQALALE-DTPEIRSALAELYLS---MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHC-CCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhcc-cchHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666 666666666666666 666666666666666666666666666666666666666666666554
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=1.1e-22 Score=196.03 Aligned_cols=191 Identities=15% Similarity=0.056 Sum_probs=149.3
Q ss_pred cHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Q 040951 362 DAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLA---- 437 (701)
Q Consensus 362 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---- 437 (701)
.|..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++++..+|++..++..+|.++...
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHH
Q 040951 438 -------GDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEE 510 (701)
Q Consensus 438 -------g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A 510 (701)
|++++|+..|+++++.+|++..+|..++.++...|++++|+..|+++++...++.++..+|.++...|++++|
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHH
Confidence 7888888888888888887777777777777777777777777777777662277777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 040951 511 RGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGC 552 (701)
Q Consensus 511 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 552 (701)
+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 171 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777776653
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.8e-22 Score=196.45 Aligned_cols=229 Identities=15% Similarity=0.053 Sum_probs=216.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHc
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA-------EVLWLMGAKEKWLA 437 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~ 437 (701)
.+...|++++|+.+|+++++.+ .+..+|..++.++...|++++|+..+++++...|.+ ..++..+|.++...
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 3489999999999999999999 899999999999999999999999999999998876 78999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHH
Q 040951 438 GDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEE 516 (701)
Q Consensus 438 g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~ 516 (701)
|++++|+..|++++...|. +.++...|++++|...+++++...|. ..++..+|.++...|++++|+..|++
T Consensus 93 ~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999987 45677788999999999999999988 89999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC----
Q 040951 517 GLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN---- 592 (701)
Q Consensus 517 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~---- 592 (701)
++...|.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++.. .|++++|+..|+++++.+
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA---VKEYASALETLDAARTKDAEVN 241 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred --CCCHHHHHHHHHH
Q 040951 593 --PLNPEIWLATIRA 605 (701)
Q Consensus 593 --p~~~~~~~~l~~~ 605 (701)
|++..++..+..+
T Consensus 242 ~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 242 NGSSAREIDQLYYKA 256 (258)
T ss_dssp TTTTHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHh
Confidence 8888888777654
No 43
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=5.4e-22 Score=210.34 Aligned_cols=285 Identities=15% Similarity=0.006 Sum_probs=243.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKK----SIWLKAAQLEKTHGSRESLIALLRKAVTY------FPQAEVLWLMGAKEK 434 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~ 434 (701)
.+...|++++|+..|++++...|.+. .++..++.++...|++++|...+++++.. .|....++..+|.++
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34899999999999999999999985 57889999999999999999999999876 334567899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCc--------------------HHHHHHHHHHHHhcC
Q 040951 435 WLAGDVPAARDILQEAYATIPNS------EEIWLAAFKLEFENRE--------------------LERARMLLAKARDMG 488 (701)
Q Consensus 435 ~~~g~~~~A~~~l~~a~~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a~~~~ 488 (701)
...|++++|+..+++++...|.. ..++..++.++...|+ +++|+..+++++...
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887542 3478899999999999 999999999998752
Q ss_pred ------CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 489 ------GT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF------NLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 489 ------p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
|. ..++..+|.++...|++++|+.++++++...|... .++..+|.++...|++++|...|++++...
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 22 56888999999999999999999999998876543 389999999999999999999999999887
Q ss_pred CCC------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 556 PNC------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN------PEIWLATIRAESKHGNKKEADSFIAKAL 623 (701)
Q Consensus 556 p~~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 623 (701)
|.. ..++..+|.++.. .|++++|...|++++...+.. ..++..++.++...|++++|...+++++
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665 6789999999999 999999999999999886543 5689999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCH
Q 040951 624 QKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKV 676 (701)
Q Consensus 624 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 676 (701)
+..+..+.. +....++..+|.++...|+.
T Consensus 335 ~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 335 EISREVGDK------------------------SGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCH------------------------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCC------------------------cchhHHHHHHHHHHHHhhHh
Confidence 886532110 11255667777777777665
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2.7e-21 Score=189.33 Aligned_cols=214 Identities=13% Similarity=0.038 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE 470 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~ 470 (701)
..|..+|..+...|++++|...|++++..+|.+..++..+|.++...|++++|+..|++++...|.+..++..++.++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040951 471 NRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQ 549 (701)
Q Consensus 471 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 549 (701)
.|++++|+..|++++...|. ..++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666666666555 55566666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 550 SGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAES 607 (701)
Q Consensus 550 ~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 607 (701)
+++...|.++.++..++.++.. .|++++|+..|++++..+|+++.++..++.+..
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAY---KENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH---TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHhCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 6666666666666666666666 666666666666666666666665555554443
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=5.9e-22 Score=210.85 Aligned_cols=280 Identities=11% Similarity=-0.034 Sum_probs=231.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCH
Q 040951 389 KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE----VLWLMGAKEKWLAGDVPAARDILQEAYAT------IPNSE 458 (701)
Q Consensus 389 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~a~~~------~p~~~ 458 (701)
....+..+|..+...|++++|+..|++++...|.++ .++..+|.++...|++++|+..|++++.. .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344666788888889999999999999999888876 47888888988899999999999988877 35556
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------CC-HHHHHHHHHHHHHhCC-----------------hHHHHHHH
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKARDMG------GT-ERVWMKSAIVERELGN-----------------NAEERGFI 514 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------p~-~~~~~~~a~~~~~~g~-----------------~~~A~~~~ 514 (701)
.++..++.++...|++++|...|++++... +. ..++..+|.++...|+ +++|+.++
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 678889999999999999999999988763 23 6688888999999999 89999999
Q ss_pred HHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCH------HHHHHHHHHHhhhccCCCHHHHH
Q 040951 515 EEGLKRF------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCI------PLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 515 ~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
++++... |....++..+|.++...|++++|+..|++++...|... .++..++.++.. .|++++|+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~ 283 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF---LGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT---TTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH---CcCHHHHH
Confidence 8888764 22355888999999999999999999999998776532 378899999999 99999999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhc
Q 040951 583 AVLSVARLKNPLN------PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKS 656 (701)
Q Consensus 583 ~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~ 656 (701)
..|++++...|.. ..++..+|.++...|++++|..++++++...+..+. .
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------~ 339 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD------------------------R 339 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------------------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC------------------------h
Confidence 9999999887644 578889999999999999999999999887653210 0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 657 DRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 657 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
+....++..+|.++...|++++|..+|++++++.+..++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 112568888999999999999999999999998876543
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=206.74 Aligned_cols=282 Identities=12% Similarity=0.009 Sum_probs=243.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CC
Q 040951 387 LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE----VLWLMGAKEKWLAGDVPAARDILQEAYATI------PN 456 (701)
Q Consensus 387 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~------p~ 456 (701)
+.....+...|..+...|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++... |.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34566788999999999999999999999999999884 578899999999999999999999998773 33
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC--------------------hHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGN--------------------NAE 509 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~--------------------~~~ 509 (701)
...++..++.++...|++++|...+++++...|. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 4567889999999999999999999999986543 5588899999999999 999
Q ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCH------HHHHHHHHHHhhhccCCC
Q 040951 510 ERGFIEEGLKRF------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCI------PLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 510 A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~g~ 577 (701)
|+..+.+++... |....++..+|.++...|++++|+..|++++...|... .++..+|.++.. .|+
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~ 242 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF---LGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTC
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH---cCC
Confidence 999999998873 33456899999999999999999999999998766543 389999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHH
Q 040951 578 LSKARAVLSVARLKNPLN------PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKD 651 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~ 651 (701)
+++|+..|++++...|.. ..++..+|.++...|++++|...+++++...+..+..
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------------------- 303 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR------------------- 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc-------------------
Confidence 999999999999887655 5788999999999999999999999999886542110
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 652 ALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 652 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
+..+.++..+|.++...|++++|..+|++++++.+..++
T Consensus 304 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 342 (406)
T 3sf4_A 304 -----IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 342 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 112668889999999999999999999999998665543
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=1e-21 Score=202.06 Aligned_cols=278 Identities=12% Similarity=0.009 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE----VLWLMGAKEKWLAGDVPAARDILQEAYAT------IPNSEEI 460 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~a~~~------~p~~~~~ 460 (701)
..+...|..+...|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++.. .|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3456667777777777777777777777777763 56667777777777777777777777665 2333456
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCC--------------------hHHHHHH
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGN--------------------NAEERGF 513 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~--------------------~~~A~~~ 513 (701)
+..++.++...|++++|...+++++...+. ..++..++.++...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 677777888888888888888877765432 3467777888888888 8888888
Q ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHhhhccCCCHHHH
Q 040951 514 IEEGLKRF------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSLANLEEKRNGLNGLSKA 581 (701)
Q Consensus 514 ~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~g~~~~A 581 (701)
+++++... |....++..+|.++...|++++|...+++++...|.. ..++..++.++.. .|++++|
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A 242 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF---LGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HTCHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHH
Confidence 88777652 2235578888889999999999999999988765442 3378889999999 9999999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHh
Q 040951 582 RAVLSVARLKNPLN------PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVK 655 (701)
Q Consensus 582 ~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~ 655 (701)
...+++++...|.. ..++..++.++...|++++|...+++++...|..+..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----------------------- 299 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR----------------------- 299 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----------------------
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-----------------------
Confidence 99999998876654 5688889999999999999999999998876532100
Q ss_pred cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 656 SDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 656 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
+....++..+|.++...|++++|..+|++++++.+..+|
T Consensus 300 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~d 338 (338)
T 3ro2_A 300 -IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338 (338)
T ss_dssp -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC------
T ss_pred -HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcC
Confidence 112567888999999999999999999999999887664
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=4.8e-20 Score=177.88 Aligned_cols=214 Identities=14% Similarity=0.058 Sum_probs=163.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 385 VFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAA 464 (701)
Q Consensus 385 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~l 464 (701)
..|.+..+|..++.++...|++++|...|++++..+|.+..++..++.++...|++++|+..|++++..+|++..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 35667777888888888888888888888888888888888888888888888888888888888888888777777778
Q ss_pred HHHHHHc-CcHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 465 FKLEFEN-RELERARMLLAKARD--MGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH 540 (701)
Q Consensus 465 a~~~~~~-~~~~~A~~~~~~a~~--~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 540 (701)
+.++... |++++|+..+++++. ..|. ..++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 8888777 888888888887777 4444 66777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhhCC-CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 541 LKEAKEAYQSGCNQCP-NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLA 601 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 601 (701)
+++|...|++++...| .+...+..++.++.. .|+.+.|..+++.+...+|+++.+...
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKA---LGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777 777777777777777 777777777777777777777665443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=6.6e-21 Score=186.58 Aligned_cols=215 Identities=16% Similarity=0.094 Sum_probs=187.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVE 501 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~ 501 (701)
.+..++.+|..+...|++++|+..|++++..+|++..++..++.++...|++++|+..|++++...|. ..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHH
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKA 581 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A 581 (701)
...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++...|.++.++..++.++.. .|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN---EGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---cCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcC
Q 040951 582 RAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMV 640 (701)
Q Consensus 582 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~ 640 (701)
+..|++++...|+++.++..++.++...|++++|...++++++..|+++..+.....+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877776655443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=2.8e-20 Score=183.36 Aligned_cols=213 Identities=14% Similarity=0.040 Sum_probs=156.4
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 385 VFLTK-KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463 (701)
Q Consensus 385 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~ 463 (701)
.+|.+ ..+|..++.++...|++++|...|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34544 56777777777777777778777877777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHh--cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 464 AFKLEFENRELERARMLLAKARD--MGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH 540 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~--~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 540 (701)
++.++...|++++|+..|++++. ..|. ..++..++.++...|++++|+.+|++++...|.++.++..+|.++...|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 77777777777777777777776 5555 66677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 541 LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
+++|...|++++...|.+...+..++.++.. .|++++|...+++++...|+++.++.
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKV---FEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7777777777777777777777777777777 77777777777777777777665543
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=2.8e-18 Score=195.25 Aligned_cols=321 Identities=12% Similarity=0.013 Sum_probs=232.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHCCCCHHHHHHHH-hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHH
Q 040951 249 LWKALVEISSEEEARILLHRAVECCPLDVELWLALA-RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVG 327 (701)
Q Consensus 249 l~~~~~~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~-~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~ 327 (701)
+...++.++.+++|..+|+++- ....+...+. .++++++|.++++++ +++.+|..+|..+...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5566667778888888888862 2233333344 667788888777754 55788888888888888888888
Q ss_pred HHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951 328 KIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRE 407 (701)
Q Consensus 328 ~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 407 (701)
..|.++ + +...|...+..+ .+.|++++|++.|..+.+..++. .+-..++..+.+.++++
T Consensus 1126 dsYiKA-----d-----D~say~eVa~~~----------~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1126 DSYIKA-----D-----DPSSYMEVVQAA----------NTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHhc-----C-----ChHHHHHHHHHH----------HHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHH
Confidence 888775 1 156677766555 78888888888888888777442 12234677777777777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 040951 408 SLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDM 487 (701)
Q Consensus 408 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 487 (701)
+...+ + ..| +...|...|..+...|++++|..+|.++ ..|..++.++...|+++.|++.+.++
T Consensus 1185 ele~f----I-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA--- 1247 (1630)
T 1xi4_A 1185 ELEEF----I-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA--- 1247 (1630)
T ss_pred HHHHH----H-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh---
Confidence 53333 2 233 3355667888888888888888888875 36788888888888888888888877
Q ss_pred CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHH
Q 040951 488 GGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLAN 567 (701)
Q Consensus 488 ~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 567 (701)
.+..+|...+..+...|++..|..+... +..+ ++.+..++..|...|.+++|+.+++.++..+|.+..++..++.
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 3467888888888888888888877663 4333 4455578888888888888888888888888888888877777
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 568 LEEKRNGLNGLSKARAVLSVARLKNP-----LNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 568 ~~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
++.+ +..++..++.+.|...+...| .+..+|..+..+|.+.|+++.|...+-..
T Consensus 1323 LyaK-y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1323 LYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHh-CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 7764 114567777777777766665 66778888888888888888887554433
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=1.1e-20 Score=176.81 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 040951 490 TERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLE 569 (701)
Q Consensus 490 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 569 (701)
++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..++.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHH
Q 040951 570 EKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKG 649 (701)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~ 649 (701)
.. .++++.|...+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|.
T Consensus 84 ~~---~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--------------------- 139 (184)
T 3vtx_A 84 FM---IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--------------------- 139 (184)
T ss_dssp HH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------
T ss_pred HH---cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch---------------------
Confidence 99 999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc
Q 040951 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDFW 697 (701)
Q Consensus 650 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~w 697 (701)
++.++..+|.+|...|++++|+..|++|++++|+++..+
T Consensus 140 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 140 ---------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHC
T ss_pred ---------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHH
Confidence 488888999999999999999999999999999876543
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=4.6e-21 Score=191.58 Aligned_cols=245 Identities=11% Similarity=-0.035 Sum_probs=213.4
Q ss_pred HhcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 040951 367 KKRGSIETARAIFSHACTVF----LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPA 442 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~ 442 (701)
...|++++|+..|++++... |.+..+|..+|.++...|++++|...|++++..+|.+..+|..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 45688999999999999974 55678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
|+..|++++..+|++..++..++.++...|++++|+..|++++...|+ ....... .+....|++++|+..+.+++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL-YLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998 4333333 34467799999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHH
Q 040951 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC----IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPE 597 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 597 (701)
|.+...+. ++.++...++.++|...+++++...|.. +.++..+|.++.. .|++++|+..|++++..+|++..
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS---LGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCTTCH
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCchhHH
Confidence 98766654 7777888899999999999998877643 6889999999999 99999999999999999997743
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 040951 598 IWLATIRAESKHGNKKEADSFI 619 (701)
Q Consensus 598 ~~~~l~~~~~~~g~~~~A~~~~ 619 (701)
.++.++...|++++|+..+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466777888888888776
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=3.9e-20 Score=182.34 Aligned_cols=213 Identities=17% Similarity=0.057 Sum_probs=203.4
Q ss_pred hCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHH
Q 040951 419 YFPQA-EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMK 496 (701)
Q Consensus 419 ~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~ 496 (701)
.+|.. ..+++.+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|...|++++...|. ..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 45554 7889999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcc
Q 040951 497 SAIVERELGNNAEERGFIEEGLK--RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 574 (701)
++.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|...|++++...|.++.++..++.++..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--- 187 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK--- 187 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH---
Confidence 99999999999999999999999 8898899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~ 634 (701)
.|++++|...|++++...|.++..+..++.++...|++++|..+++++++..|+++.++.
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875543
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=2e-17 Score=188.33 Aligned_cols=338 Identities=15% Similarity=0.091 Sum_probs=270.2
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHH-hhcCHHHHHHHHHHHHHHCCCCHHHHHHHHhc----cChHHHHHHHHHHHHh
Q 040951 228 DKANKSRVLRMALDEIPDSVRLWKALV-EISSEEEARILLHRAVECCPLDVELWLALARL----ETYGVARSVLNKARKK 302 (701)
Q Consensus 228 ~~~~a~~~l~kal~~~P~~~~l~~~~~-~l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~l----~~~~~A~~~l~~a~~~ 302 (701)
.+++|..+|+|+- ........++ .++++++|..+++++ +++.+|..+++. |++++|+..|.++
T Consensus 1064 lyEEAf~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred CHHHHHHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 7788999999973 2333334444 556888888888765 668888877764 8999999999876
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHH
Q 040951 303 LPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHA 382 (701)
Q Consensus 303 ~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~a 382 (701)
+++..|...+.++.+.|+++++.+.|..+.+..+... ...++.+ .|.+.++++. .+.|
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~----Idt~Laf------------aYAKl~rlee-le~f--- 1189 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY----VETELIF------------ALAKTNRLAE-LEEF--- 1189 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc----ccHHHHH------------HHHhhcCHHH-HHHH---
Confidence 7899999999999999999999999999998664432 2223222 2466678774 3333
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 040951 383 CTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWL 462 (701)
Q Consensus 383 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~ 462 (701)
+ ..| +...|..+|..+...|++++|..+|.++ ..|..++.++...|++++|++.++++ .+..+|.
T Consensus 1190 I-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWk 1254 (1630)
T 1xi4_A 1190 I-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK 1254 (1630)
T ss_pred H-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHH
Confidence 2 234 4567788999999999999999999996 47999999999999999999999998 5678999
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCC
Q 040951 463 AAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER--LGH 540 (701)
Q Consensus 463 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~ 540 (701)
..+..+...|++..|..+... +.. +++.+..++.+|...|.+++|+.+++.++.++|.+..++..++.++.+ .++
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-IVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-hhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 999999999999999998774 333 345556888999999999999999999999999999999888888754 567
Q ss_pred HHHHHHHHHHHhhhCC-----CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh------------CCCCHHHHHHHH
Q 040951 541 LKEAKEAYQSGCNQCP-----NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK------------NPLNPEIWLATI 603 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~------------~p~~~~~~~~l~ 603 (701)
..++.+.|..-+...| ....+|..+..+|.+ .|+++.|...+-..... .+.++++++..+
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~---~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai 1408 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK---YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHH
Confidence 7788888888877766 678899999999999 99999999544433222 577899999999
Q ss_pred HHHHhcC---------------CHHHHHHHHH
Q 040951 604 RAESKHG---------------NKKEADSFIA 620 (701)
Q Consensus 604 ~~~~~~g---------------~~~~A~~~~~ 620 (701)
.+|...+ ++..+..++.
T Consensus 1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 9998766 6666666655
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=7.5e-20 Score=176.52 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=202.4
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHH
Q 040951 419 YFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKS 497 (701)
Q Consensus 419 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 497 (701)
..|.++.++..+|.++...|++++|+..|++++..+|++..++..++.++...|++++|...|++++...|. ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHh-CChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcc
Q 040951 498 AIVEREL-GNNAEERGFIEEGLK--RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG 574 (701)
Q Consensus 498 a~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 574 (701)
+.++... |++++|+.++++++. ..|.+..++..+|.++...|++++|+..|+++++..|.++.++..++.++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--- 159 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML--- 159 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---
Confidence 9999999 999999999999999 6677789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 575 LNGLSKARAVLSVARLKNP-LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~ 634 (701)
.|++++|...+++++...| .++..+..++.++...|+.+.|..+++.+++..|+++....
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999 99999999999999999999999999999999999875543
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=3.3e-21 Score=205.04 Aligned_cols=264 Identities=14% Similarity=0.031 Sum_probs=234.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHH
Q 040951 364 EECKKRGSIETARAIFSHACTVFLTKK----SIWLKAAQLEKTHGSRESLIALLRKAVTY------FPQAEVLWLMGAKE 433 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~ 433 (701)
..+...|++++|+..|++++...|++. .+|..++.++...|++++|...|++++.. .|....++..+|.+
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 344899999999999999999999987 58899999999999999999999999987 46677889999999
Q ss_pred HHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCc-----------------HHHHHHHHHHHHhcCC-
Q 040951 434 KWLAGDVPAARDILQEAYAT------IPNSEEIWLAAFKLEFENRE-----------------LERARMLLAKARDMGG- 489 (701)
Q Consensus 434 ~~~~g~~~~A~~~l~~a~~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~a~~~~p- 489 (701)
+...|++++|+..|++++.. .|....++..++.++...|+ +++|+..+++++...+
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 44456688899999999999 9999999999987542
Q ss_pred --C----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 490 --T----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN------LWLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 490 --~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
. ..++..+|.++...|++++|+.+|++++...|.... ++..+|.++...|++++|+..|++++...|.
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 1 568889999999999999999999999998775433 8899999999999999999999999998775
Q ss_pred C------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 558 C------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN------PEIWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 558 ~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
. ..++..+|.++.. .|++++|+..|++++...+.. ..++..++.++...|++++|..+|+++++.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTL---LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4 6789999999999 999999999999999876432 458899999999999999999999999999
Q ss_pred CCCCH
Q 040951 626 CPNSG 630 (701)
Q Consensus 626 ~p~~~ 630 (701)
.+..+
T Consensus 373 ~~~~~ 377 (411)
T 4a1s_A 373 AXXXX 377 (411)
T ss_dssp CCHHH
T ss_pred Hhhcc
Confidence 87643
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=5.3e-21 Score=196.60 Aligned_cols=262 Identities=16% Similarity=0.022 Sum_probs=227.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKK----SIWLKAAQLEKTHGSRESLIALLRKAVTY------FPQAEVLWLMGAKEK 434 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~ 434 (701)
.+...|++++|+..|++++...|++. .++..++.++...|++++|...+++++.. .|....++..+|.++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34899999999999999999999984 67889999999999999999999999877 344567899999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCc--------------------HHHHHHHHHHHHhcC
Q 040951 435 WLAGDVPAARDILQEAYATIPNS------EEIWLAAFKLEFENRE--------------------LERARMLLAKARDMG 488 (701)
Q Consensus 435 ~~~g~~~~A~~~l~~a~~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a~~~~ 488 (701)
...|++++|+..+++++...|.. ..++..++.++...|+ +++|...+++++...
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876543 2378889999999999 999999999988753
Q ss_pred C---C----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 489 G---T----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 489 p---~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
+ + ..++..++.++...|++++|+.++++++...|.. ..++..+|.++...|++++|...+++++...
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1 5688899999999999999999999999886543 3388999999999999999999999999877
Q ss_pred CCC------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040951 556 PNC------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN------PEIWLATIRAESKHGNKKEADSFIAKAL 623 (701)
Q Consensus 556 p~~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 623 (701)
|.. ..++..++.++.. .|++++|+..+++++...|.. ..++..++.++...|++++|...+++++
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 254 RQLKDRAVEAQSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 655 6788999999999 999999999999999876532 4588899999999999999999999999
Q ss_pred HhCCCC
Q 040951 624 QKCPNS 629 (701)
Q Consensus 624 ~~~p~~ 629 (701)
+..+..
T Consensus 331 ~~~~~~ 336 (338)
T 3ro2_A 331 EISREV 336 (338)
T ss_dssp HC----
T ss_pred HHHHhh
Confidence 988753
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.8e-20 Score=187.31 Aligned_cols=245 Identities=12% Similarity=-0.018 Sum_probs=212.6
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHH
Q 040951 401 KTHGSRESLIALLRKAVTYF----PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELER 476 (701)
Q Consensus 401 ~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~ 476 (701)
...|++++|+..|++++... |.+..++..+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34578999999999999874 45678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 477 ARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 477 A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
|+..|++++...|. ..++..+|.++...|++++|+.+|++++...|+++......+. +...|++++|...|++++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999998 9999999999999999999999999999999998866665554 466799999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 040951 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN----PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGI 631 (701)
Q Consensus 556 p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 631 (701)
|.+...+. ++.++.. .++.++|...+++++...|.. +.+|..+|.++...|++++|...|++++..+|++
T Consensus 175 ~~~~~~~~-~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLG---NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHHH-HHHHHTT---SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHHH-HHHHHHH---hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 98876665 6666777 888999999999998877643 6899999999999999999999999999998863
Q ss_pred HHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040951 632 LWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWF 683 (701)
Q Consensus 632 l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 683 (701)
. ...+.++...|++++|++.|
T Consensus 249 ----------------------------~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 ----------------------------F---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ----------------------------C---HHHHHHHHHHHHHHHC----
T ss_pred ----------------------------H---HHHHHHHHHHHHHHhhHHHH
Confidence 1 22366777888888888776
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=5.6e-20 Score=197.56 Aligned_cols=306 Identities=10% Similarity=-0.007 Sum_probs=143.3
Q ss_pred HhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcC
Q 040951 284 ARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNT---SMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAG 360 (701)
Q Consensus 284 ~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~---~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~ 360 (701)
.+.|++++|...|+++.+. .++.+++.+|.++...|+. ++|...|+++++. + ...+..++...
T Consensus 14 ~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~-----~~A~~~Lg~~~---- 79 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S-----PRAQARLGRLL---- 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------------CHHHHHHHH----
T ss_pred HhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C-----HHHHHHHHHHH----
Confidence 3345555566655555443 3444555555555555555 5566666655543 1 12233333211
Q ss_pred CcHHHHHhc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCcHHHHHHHHH
Q 040951 361 SDAEECKKR-----GSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRES---LIALLRKAVTYFPQAEVLWLMGAK 432 (701)
Q Consensus 361 ~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~p~~~~~~~~~a~ 432 (701)
... +++++|+..|++++...+ +.++..++.++...+..+. +...+.++.. +.++.+++.++.
T Consensus 80 ------~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~ 149 (452)
T 3e4b_A 80 ------AAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVL 149 (452)
T ss_dssp ------HTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHH
T ss_pred ------HhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 122 255566666666655332 2355555655555443322 2222332222 233455555566
Q ss_pred HHHHcCChHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 040951 433 EKWLAGDVPAA----RDILQEAYATIPNSEEIWLAAFKLEFENR---ELERARMLLAKARDMGGT-ERVWMKSAIVEREL 504 (701)
Q Consensus 433 ~~~~~g~~~~A----~~~l~~a~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~ 504 (701)
++...+.++++ ..++..+...+|. ++..++.++...| ++++|+..|+++....|. ...++.++.++...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 66555533332 2233333333332 5555666666666 666666666666655554 55555555555433
Q ss_pred ----CChHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhh-ccCC
Q 040951 505 ----GNNAEERGFIEEGLKRFPSFFNLWLMLGQL-E--ERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKR-NGLN 576 (701)
Q Consensus 505 ----g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~g 576 (701)
+++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+..|+++.+. .++.+++.+|.++..- +...
T Consensus 227 ~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~ 301 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPA 301 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC
Confidence 45666666666655 5556666666665 3 3455666666666665532 3555666666655530 0012
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 040951 577 GLSKARAVLSVARLKNPLNPEIWLATIRAESK----HGNKKEADSFIAKALQ 624 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~ 624 (701)
++++|+.+|+++. |.++..+..+|.+|.. ..++++|...|+++.+
T Consensus 302 d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 302 DAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp CHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 5666666666655 5566666666655554 2256666666666554
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=7.9e-20 Score=170.85 Aligned_cols=168 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Q 040951 424 EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVER 502 (701)
Q Consensus 424 ~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~ 502 (701)
+.+|+.+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+.+++...|+ +.++..++.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444444443 444444444444
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
..++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.++.+|..+|.++.. .|++++|+
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~---~g~~~~A~ 161 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG---KGLRDEAV 161 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH---CCCHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444444444 44444444
Q ss_pred HHHHHHHHhCCC
Q 040951 583 AVLSVARLKNPL 594 (701)
Q Consensus 583 ~~~~~a~~~~p~ 594 (701)
..|+++++.+|+
T Consensus 162 ~~~~~al~~~p~ 173 (184)
T 3vtx_A 162 KYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHTTHH
T ss_pred HHHHHHHhCCcc
Confidence 444444444443
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=4.6e-19 Score=177.15 Aligned_cols=236 Identities=15% Similarity=0.049 Sum_probs=165.3
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCHHHHHH
Q 040951 421 PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFE----NRELERARMLLAKARDMGGTERVWMK 496 (701)
Q Consensus 421 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~ 496 (701)
|.++.+++.+|.++...|++++|+..|+++++ |++..++..++.++.. .+++++|+..|+++++.. .+.+++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~ 79 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHL 79 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 55566666666666666666666666666666 5556666666666666 666666666666666553 4666666
Q ss_pred HHHHHHH----hCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 040951 497 SAIVERE----LGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER----LGHLKEAKEAYQSGCNQCPNCIPLWYSLANL 568 (701)
Q Consensus 497 ~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 568 (701)
+|.++.. .+++++|+..|++++... ++.++..+|.++.. .+++++|+..|+++++.. ++.++..++.+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 155 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 7777766 777777777777777653 56777777777777 777777777777777654 56667777777
Q ss_pred Hhhh-ccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCc
Q 040951 569 EEKR-NGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESK----HGNKKEADSFIAKALQKCPNSGILWAELIKMVPHH 643 (701)
Q Consensus 569 ~~~~-~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~ 643 (701)
+..- +..+++++|+.+|++++.. .++..+..++.++.. .+++++|...|+++++..|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---------------- 217 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---------------- 217 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----------------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----------------
Confidence 6530 0146788888888887776 356778888888888 8888888888888877654
Q ss_pred cchhHHHHHHHhcCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcccc
Q 040951 644 DRKSKGKDALVKSDRDPHVFAAVAKLFWH----DRKVDKARNWFNKAVSLDPDTGDFW 697 (701)
Q Consensus 644 ~~~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~d~w 697 (701)
+.++..+|.+|.. .|++++|..+|+++++..|+++..|
T Consensus 218 ----------------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 218 ----------------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp ----------------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6677778888887 8888888888888888887665443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=3.9e-20 Score=200.09 Aligned_cols=213 Identities=15% Similarity=0.068 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 040951 406 RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDV-PAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKA 484 (701)
Q Consensus 406 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 484 (701)
++.++..++......|.+..+++.+|.++...|++ ++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555566666666666667777777777777777 77777777777777777777777777777777777777777777
Q ss_pred HhcCCCHHHHHHHHHHHHHh---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHHH
Q 040951 485 RDMGGTERVWMKSAIVEREL---------GNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL--------GHLKEAKEA 547 (701)
Q Consensus 485 ~~~~p~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~ 547 (701)
+...|+..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.++... |++++|+..
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 77766666667777777666 7788888888888888888888888888888877 888888888
Q ss_pred HHHHhhhCC---CCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 548 YQSGCNQCP---NCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAK 621 (701)
Q Consensus 548 ~~~al~~~p---~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 621 (701)
|+++++.+| .++.+|..+|.++.. .|++++|+..|++++..+|+++.++..++.++...|++++|+..+.+
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKY---EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888 788888888888888 88888888888888888888888888888888888887777765543
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=5e-18 Score=169.59 Aligned_cols=239 Identities=11% Similarity=0.001 Sum_probs=214.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHH
Q 040951 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL----AGDVPAARDILQEAYATIPNSEEIW 461 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~a~~~~p~~~~~~ 461 (701)
+|+++.++..++.++...|++++|...|++++. |.++.++..+|.++.. .+++++|+..|+++++.+ +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 7888999999999999 999999999999999885 78999
Q ss_pred HHHHHHHHH----cCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 462 LAAFKLEFE----NRELERARMLLAKARDMGGTERVWMKSAIVERE----LGNNAEERGFIEEGLKRFPSFFNLWLMLGQ 533 (701)
Q Consensus 462 ~~la~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 533 (701)
..++.++.. .+++++|+..|++++... .+.+++.+|.++.. .+++++|+.+|+++++.. ++..+..+|.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 999999999 999999999999999873 68899999999999 999999999999999976 5789999999
Q ss_pred HHHH----cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040951 534 LEER----LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK-RNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESK 608 (701)
Q Consensus 534 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 608 (701)
++.. .+++++|+..|+++++. .++.++..++.++.. .+..+++++|+.+|+++++..| +..+..++.++..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 9998 99999999999999987 467889999998875 1125899999999999999876 7899999999999
Q ss_pred ----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 609 ----HGNKKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 609 ----~g~~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
.+++++|...|+++++..|+++..+..
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999976555444
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=1.1e-19 Score=196.53 Aligned_cols=216 Identities=16% Similarity=0.052 Sum_probs=206.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 040951 369 RGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSR-ESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDIL 447 (701)
Q Consensus 369 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l 447 (701)
.+.+++++..++......|.+..+|..+|.++...|++ ++|+..|+++++.+|.+..+|..+|.++...|++++|+..|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34468888899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh--------CChHH
Q 040951 448 QEAYATIPNSEEIWLAAFKLEFEN---------RELERARMLLAKARDMGGT-ERVWMKSAIVEREL--------GNNAE 509 (701)
Q Consensus 448 ~~a~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~--------g~~~~ 509 (701)
+++++.+|+ ..++..++.++... |++++|+..|++++...|+ ..+|..+|.++... |++++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 999999999 79999999999999 9999999999999999999 99999999999999 99999
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHH
Q 040951 510 ERGFIEEGLKRFP---SFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLS 586 (701)
Q Consensus 510 A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~ 586 (701)
|+..|++++..+| +++.+|+.+|.++...|++++|+..|+++++.+|++..++..++.++.. .|++++|+..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~---lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF---LSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999 999999888665
Q ss_pred HH
Q 040951 587 VA 588 (701)
Q Consensus 587 ~a 588 (701)
+.
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=3e-18 Score=184.05 Aligned_cols=365 Identities=14% Similarity=0.064 Sum_probs=215.0
Q ss_pred CHHHHHHHHHHHHHhcCCCHH--HHHHHHhhc---CHHHHHHHHHHHHHHCCCCHHHHHHHHh----c-----cChHHHH
Q 040951 228 DKANKSRVLRMALDEIPDSVR--LWKALVEIS---SEEEARILLHRAVECCPLDVELWLALAR----L-----ETYGVAR 293 (701)
Q Consensus 228 ~~~~a~~~l~kal~~~P~~~~--l~~~~~~l~---~~~~A~~~l~~a~~~~P~~~~l~~~l~~----l-----~~~~~A~ 293 (701)
+++.|...|+++.+....... +-..+...+ ++++|...|+++++.+ +..+..++. . +++++|.
T Consensus 18 ~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~---~~A~~~Lg~~~~~~~~~~~~~~~~A~ 94 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS---PRAQARLGRLLAAKPGATEAEHHEAE 94 (452)
T ss_dssp HHHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC---HHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 556677777776654321111 111122222 4477888888877663 333333332 1 2677788
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcC---
Q 040951 294 SVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRG--- 370 (701)
Q Consensus 294 ~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~--- 370 (701)
..|+++.+.. ++.+++.+|.++...+....+...++......+... ...+..++..+ ...+
T Consensus 95 ~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~----~~a~~~Lg~~y----------~~~~~~~ 158 (452)
T 3e4b_A 95 SLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY----PEAGLAQVLLY----------RTQGTYD 158 (452)
T ss_dssp HHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC----TTHHHHHHHHH----------HHHTCGG
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC----HHHHHHHHHHH----------HcCCCcc
Confidence 8888887743 344777788887776654433333333332222111 23444444443 4444
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CChHH
Q 040951 371 -SIETARAIFSHACTVFLTKKSIWLKAAQLEKTHG---SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLA----GDVPA 442 (701)
Q Consensus 371 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----g~~~~ 442 (701)
+.+.+..+++.+...+|. ++..++.++...| ++++|+..|+++....|.....++.++.++... +++++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 344455555555555554 7778888888788 778888888888888877777777777777554 67788
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----ChHHHHHHH
Q 040951 443 ARDILQEAYATIPNSEEIWLAAFKL-E--FENRELERARMLLAKARDMGGTERVWMKSAIVERELG-----NNAEERGFI 514 (701)
Q Consensus 443 A~~~l~~a~~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g-----~~~~A~~~~ 514 (701)
|+.+|+++. |+++.++..++.+ + ...+++++|+..|+++.+.. .+..++.+|.++. .| ++++|+.+|
T Consensus 236 A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 236 AQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 888888876 7777778888777 3 45678888888888877543 4777777777776 45 788888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHH
Q 040951 515 EEGLKRFPSFFNLWLMLGQLEER----LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK-RNGLNGLSKARAVLSVAR 589 (701)
Q Consensus 515 ~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~g~~~~A~~~~~~a~ 589 (701)
+++. |.++.+++.+|.+|.. ..++++|...|+++.+ +.++.+.+.++.+|.. .+...++.+|..+|+++.
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 8877 7778888888877766 3478888888888765 3456677777777763 001347788888888877
Q ss_pred HhCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhC
Q 040951 590 LKNPLNPEIWLATIRAES--KHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 590 ~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~ 626 (701)
...+. .....+..+.. ..++..+|..+.++..+..
T Consensus 386 ~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 386 AQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 75543 33344444432 2335556666666655543
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.82 E-value=4.8e-18 Score=164.71 Aligned_cols=210 Identities=11% Similarity=-0.036 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 387 LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFP-QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAF 465 (701)
Q Consensus 387 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la 465 (701)
|.++..+...|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 44556777777777777777777777777777776 66677777777777777777777777777777777777777777
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCCC-H-------HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 040951 466 KLEFENRELERARMLLAKARDMGGT-E-------RVWMKSAIVERELGNNAEERGFIEEGLKRFPS--FFNLWLMLGQLE 535 (701)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~a~~~~p~-~-------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~ 535 (701)
.++...|++++|+..|++++...|+ + .+|..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 7777777777777777777777766 4 45666677777777777777777777777777 667777777776
Q ss_pred HHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 536 ERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606 (701)
Q Consensus 536 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 606 (701)
...| ...++++....+.+...+.. ..... .+.+++|+..|+++++.+|+++.+...++.+.
T Consensus 164 ~~~~-----~~~~~~a~~~~~~~~~~~~~--~~~~~---~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASSNKEKYAS--EKAKA---DAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTTCHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcccCCHHHHHH--HHHHH---HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 5433 34455555555555443322 22333 45567777777777777777766666665554
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.81 E-value=1.1e-18 Score=183.68 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=198.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HH
Q 040951 393 WLKAAQLEKTHGSRESLIALLRKAVTY---FPQ---AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS-------EE 459 (701)
Q Consensus 393 ~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~-------~~ 459 (701)
++..|.++...|++++|...|++++.. .|+ ...++..+|.++...|++++|+..+.+++...+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 444899999999999999999999987 333 45789999999999999999999999999885443 34
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHH-----hC-CCCHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGNNAEERGFIEEGLK-----RF-PSFFN 526 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~ 526 (701)
++..+|.++...|++++|...|++++...+. ..++..+|.++...|++++|+.+|++++. .. |....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 7778999999999999999999999986532 46889999999999999999999999999 56 77788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCC-----CCHHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHhCCCCHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCP-----NCIPLWYSLANLEEKRNGLNG---LSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~ 598 (701)
++..+|.++...|++++|...+++++...+ .....+..++.++.. .|+ +.+|+..+++. ...|....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~al~~~~~~-~~~~~~~~~ 341 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS---GPDEEAIQGFFDFLESK-MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS---SCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 999999999999999999999999998743 333345678889988 998 88888888876 333445578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
+..+|.++...|++++|...|+++++....
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987543
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=1e-17 Score=162.35 Aligned_cols=205 Identities=17% Similarity=0.119 Sum_probs=180.4
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHH
Q 040951 421 PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP-NSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSA 498 (701)
Q Consensus 421 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a 498 (701)
+.++..++..|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..|++++...|. ..+|..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55678999999999999999999999999999998 88899999999999999999999999999999999 89999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC--CHHHHHHHHHHH
Q 040951 499 IVERELGNNAEERGFIEEGLKRFPSFF-------NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN--CIPLWYSLANLE 569 (701)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~ 569 (701)
.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 999999999999999999999999998 66999999999999999999999999999999 899999999998
Q ss_pred hhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 570 EKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
.. .| ...++++....+.++..+. +......+.+++|+..|+++++..|+++.+...
T Consensus 164 ~~---~~-----~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 164 YN---NG-----ADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HH---HH-----HHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HH---HH-----HHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 77 43 4556777777777755543 334556678899999999999999987554433
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=3.8e-18 Score=179.59 Aligned_cols=226 Identities=11% Similarity=0.017 Sum_probs=192.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHH
Q 040951 364 EECKKRGSIETARAIFSHACTV---FLT---KKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA-------EVLWLMG 430 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~ 430 (701)
..+...|++++|+..|++++.. .|+ ...++..+|.++...|+++.|...+++++...+.. ..++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3448999999999999999987 233 45789999999999999999999999999874433 4578899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCcHHHHHHHHHHHHh-----cC-CC-HHHHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYATIPNSE------EIWLAAFKLEFENRELERARMLLAKARD-----MG-GT-ERVWMKS 497 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~-p~-~~~~~~~ 497 (701)
|.++...|++++|+..|++++...|... .++..+|.++...|++++|+..|++++. .. |. ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 9999999999999999999998865432 4788899999999999999999999998 44 55 8889999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRF-----PSFFNLWLMLGQLEERLGH---LKEAKEAYQSGCNQCPNCIPLWYSLANLE 569 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~ 569 (701)
|.++...|++++|+.++++++... |.....+..++.++...|+ +.+|+..+++. ...|....++..+|.++
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 999999999999999999999884 3333446778999999999 88888888876 33444567889999999
Q ss_pred hhhccCCCHHHHHHHHHHHHHhCC
Q 040951 570 EKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
.. .|++++|...|++++....
T Consensus 350 ~~---~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HE---RKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHT
T ss_pred HH---CCCHHHHHHHHHHHHHHHH
Confidence 99 9999999999999988653
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=181.30 Aligned_cols=240 Identities=13% Similarity=0.121 Sum_probs=194.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Q 040951 386 FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY--------FPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI--- 454 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~--- 454 (701)
+|....++..++.++...|++++|...|++++.. .|....++..+|.++...|++++|+..|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5677789999999999999999999999999984 56677889999999999999999999999999873
Q ss_pred -----CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 040951 455 -----PNSEEIWLAAFKLEFENRELERARMLLAKARDMG--------GT-ERVWMKSAIVERELGNNAEERGFIEEGLKR 520 (701)
Q Consensus 455 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 520 (701)
|....++..++.++...|++++|...|++++... |. ..++..+|.++...|++++|+.+|++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456688899999999999999999999999863 33 678889999999999999999999999998
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC---------CCHHHHHHHH------HHHhhhccCCC
Q 040951 521 --------FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCP---------NCIPLWYSLA------NLEEKRNGLNG 577 (701)
Q Consensus 521 --------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~la------~~~~~~~~~g~ 577 (701)
.|....++..+|.++...|++++|...|++++...| .....|.... ..... .+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 259 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD---GTS 259 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----------CC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh---HHH
Confidence 666678899999999999999999999999997533 2223333333 33344 677
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 578 LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
+.+|...+.++....|..+.++..+|.++...|++++|..+|+++++..|.
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 788888999999889999999999999999999999999999999998775
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.79 E-value=2.8e-18 Score=192.69 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 454 IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLG 532 (701)
Q Consensus 454 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 532 (701)
+|++.+++..+|.++...|++++|+..|+++++..|+ ..+|..+|.++...|++++|+..|+++++.+|++..+|..+|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444444555555555555555555555555544444 444444444444445555555555555554444444444455
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 040951 533 QLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNK 612 (701)
Q Consensus 533 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 612 (701)
.++..+|++++|++.|+++++.+|++..+|..+|.++.. .|++++|+..|+++++.+|+++.++..++.++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~---~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD---SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 544444555555555555444444444444444444444 44455555555554444444444444444444444444
Q ss_pred HHHHHHHHHHHHhCC
Q 040951 613 KEADSFIAKALQKCP 627 (701)
Q Consensus 613 ~~A~~~~~~al~~~p 627 (701)
++|.+.++++++..|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 444444444444433
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=180.70 Aligned_cols=246 Identities=16% Similarity=0.115 Sum_probs=153.6
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---
Q 040951 420 FPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT--------IPNSEEIWLAAFKLEFENRELERARMLLAKARDMG--- 488 (701)
Q Consensus 420 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--- 488 (701)
+|....++..+|.++...|++++|+.+|++++.. .|....++..++.++...|++++|...|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888888888888874 45556677778888888888888888888777652
Q ss_pred -----CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 040951 489 -----GT-ERVWMKSAIVERELGNNAEERGFIEEGLKRF--------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ 554 (701)
Q Consensus 489 -----p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 554 (701)
|. ..++..++.++...|++++|+.+|++++... |....++..+|.++...|++++|+..|++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 5566666777777777777777777776653 334455666666666666666666666666665
Q ss_pred --------CCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCHHHHHH
Q 040951 555 --------CPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL---------NPEIWLATIRAESKHGNKKEADS 617 (701)
Q Consensus 555 --------~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~ 617 (701)
.|....++..++.++.. .|++++|...|++++...|. ....|.....+....+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 256 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLK---QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD--- 256 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh---
Confidence 44445556666666666 66666666666666654221 11122222211111111000
Q ss_pred HHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 618 FIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 618 ~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
..........+..++...|..+.++..+|.+|...|++++|..+|++++++.|+
T Consensus 257 ---------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 257 ---------------------GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----------------------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ---------------------HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000011222344455556667899999999999999999999999999999885
No 74
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=4.1e-18 Score=191.28 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=168.4
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHH
Q 040951 419 YFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKS 497 (701)
Q Consensus 419 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~ 497 (701)
.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|+ ..+|..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCC
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~ 577 (701)
|.++...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+++.++..++.++.. .|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~---~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI---VCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH---TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh---ccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 040951 578 LSKARAVLSVARLKNPLN 595 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~ 595 (701)
+++|.+.++++++..|+.
T Consensus 161 ~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhH
Confidence 999999999999887654
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=1.1e-16 Score=159.87 Aligned_cols=235 Identities=15% Similarity=0.133 Sum_probs=167.3
Q ss_pred HhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHc--
Q 040951 367 KKRGSI-ETARAIFSHACTVFLTKKSIWLKAAQLEKTHG--SRESLIALLRKAVTYFPQAEVLWLMGAKEK----WLA-- 437 (701)
Q Consensus 367 ~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~-- 437 (701)
...|.+ ++|+.++.++|..+|++..+|...+.+....| .+++++..+..++..+|++..+|...+.++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 334444 68888888899999988888888888888888 888888888888888888888888888887 555
Q ss_pred -CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC------h
Q 040951 438 -GDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELE--RARMLLAKARDMGGT-ERVWMKSAIVERELGN------N 507 (701)
Q Consensus 438 -g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~------~ 507 (701)
+++++++.++++++..+|.+..+|...+.+....|.++ +++..++++++.+|. ..+|...+.+....|. +
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 67888888888888888888888888888777777766 666666776666666 6666666666555554 6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhC---CCCHHHHHHHHHHHhhhccCCCHHHHHH
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE-AKEAYQSGCNQC---PNCIPLWYSLANLEEKRNGLNGLSKARA 583 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~g~~~~A~~ 583 (701)
++++.++.+++..+|++..+|..++.++...|+... ...++.+++... |.++.++..++.++.+ .|+.++|++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~---~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ---QKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc---cCCHHHHHH
Confidence 666666666666666666666666666666665333 444555555444 5566666666666666 666666666
Q ss_pred HHHHHHH-hCCCCHHHHHHHHH
Q 040951 584 VLSVARL-KNPLNPEIWLATIR 604 (701)
Q Consensus 584 ~~~~a~~-~~p~~~~~~~~l~~ 604 (701)
+|+.+.. .+|-....|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 6666664 46666666655443
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.76 E-value=2.4e-16 Score=157.57 Aligned_cols=231 Identities=11% Similarity=0.069 Sum_probs=212.1
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CcHH
Q 040951 405 SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG--DVPAARDILQEAYATIPNSEEIWLAAFKLE----FEN---RELE 475 (701)
Q Consensus 405 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~l~~a~~~~p~~~~~~~~la~~~----~~~---~~~~ 475 (701)
..++|+..+.+++..+|.+..+|...+.++...| ++++++..++.++..+|++..+|...+.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3468999999999999999999999999999998 999999999999999999999999988888 666 7899
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHH
Q 040951 476 RARMLLAKARDMGGT-ERVWMKSAIVERELGNNA--EERGFIEEGLKRFPSFFNLWLMLGQLEERLGH------LKEAKE 546 (701)
Q Consensus 476 ~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~ 546 (701)
+++.++++++..+|. ..+|...+.+....|.++ +++.+++++++.+|.+..+|...+.+....+. ++++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 999999999999998 999999999999999998 99999999999999999999999999998887 999999
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040951 547 AYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSK-ARAVLSVARLKN---PLNPEIWLATIRAESKHGNKKEADSFIAKA 622 (701)
Q Consensus 547 ~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~-A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 622 (701)
.+.+++..+|.+..+|..++.++.. .|+... ...++++++... |.++.++..++.++...|+.++|+++|+.+
T Consensus 208 ~~~~aI~~~p~n~SaW~y~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 208 YVKDKIVKCPQNPSTWNYLLGIHER---FDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHH---TTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHh---cCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999999999999999998 777444 556777777765 889999999999999999999999999999
Q ss_pred HH-hCCCCHHHHHHHHh
Q 040951 623 LQ-KCPNSGILWAELIK 638 (701)
Q Consensus 623 l~-~~p~~~~l~~~~~~ 638 (701)
.+ .+|-....|...+.
T Consensus 285 ~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHTTCGGGHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHh
Confidence 97 69998888876543
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=2.4e-17 Score=163.44 Aligned_cols=209 Identities=11% Similarity=-0.035 Sum_probs=132.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA---EVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS--- 457 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~--- 457 (701)
...|.+...++.+|..+...|++++|+..|++++..+|.+ +.+++.+|.++...|++++|+..|++++..+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4566777777777777777777777777777777777776 6777777777777777777777777777776643
Q ss_pred HHHHHHHHHHHHH--------cCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHH
Q 040951 458 EEIWLAAFKLEFE--------NRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLW 528 (701)
Q Consensus 458 ~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 528 (701)
..+++.++.++.. .|++++|+..|++++...|+ +.++..+..+....+ .....+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~-----------------~~~~~~ 151 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA-----------------KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH-----------------HHHHHH
Confidence 4466667777776 67777777777777776665 322222211111000 011224
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHHHHhhhccC----------CCHHHHHHHHHHHHHhCCCC
Q 040951 529 LMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLANLEEKRNGL----------NGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 529 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~----------g~~~~A~~~~~~a~~~~p~~ 595 (701)
+.+|.++...|++++|+..|+++++..|++ +.++..+|.++.. . |++++|+..|++++..+|++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~---~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA---YAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH---HHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH---hcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 666777777777777777777777777663 4566777776665 4 66777777777777777776
Q ss_pred HH---HHHHHHHHHHhcCCH
Q 040951 596 PE---IWLATIRAESKHGNK 612 (701)
Q Consensus 596 ~~---~~~~l~~~~~~~g~~ 612 (701)
+. +...++.++...+++
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 43 333444444444433
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=1.8e-16 Score=166.14 Aligned_cols=263 Identities=13% Similarity=0.070 Sum_probs=156.7
Q ss_pred cHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHH
Q 040951 362 DAEECKKRGSIETARAIFSHACTVFLTKKS-----IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAE------VLWLMG 430 (701)
Q Consensus 362 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~ 430 (701)
.+..+...|++++|+..+++++...|.+.. ++..++.++...|++++|...+++++...|... .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345556677777777777777766654321 455566666667777777777777766543221 224556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC------HHHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYATI--------PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT------ERVWMK 496 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~ 496 (701)
+.++...|++++|+..+++++... |....++..++.++...|++++|...+++++...+. ...+..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 666666777777777777766653 112334455666666777777777777777665543 244556
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhCCC--CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhCCCC----HHHHHHH
Q 040951 497 SAIVERELGNNAEERGFIEEGLKRFPS--FFNLWL-----MLGQLEERLGHLKEAKEAYQSGCNQCPNC----IPLWYSL 565 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l 565 (701)
++.++...|++++|...+++++...+. .+..+. ..+.++...|++++|...+++++...|.. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 666666667777777777666655322 111111 23344556677777777776666655432 2245566
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 566 ANLEEKRNGLNGLSKARAVLSVARLKNPLN------PEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 566 a~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
+.++.. .|++++|...+++++...+.. ..++..++.++...|++++|...+.+++...+
T Consensus 260 a~~~~~---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQIL---LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 666666 677777777666666543321 13556666666667777777766666666543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=7e-17 Score=150.20 Aligned_cols=173 Identities=18% Similarity=0.140 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|...++++++..|.+..++..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGK 650 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~ 650 (701)
. .|++++|...+++++...|.++.++..++.++...|++++|...+++++...|.
T Consensus 88 ~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------------- 142 (186)
T 3as5_A 88 Q---VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---------------------- 142 (186)
T ss_dssp H---HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------
T ss_pred H---hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc----------------------
Confidence 8 888888888888888888888888888888888888888888888888888776
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 040951 651 DALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 651 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
++.++..+|.++...|++++|..+|+++++.+|++...
T Consensus 143 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 143 --------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred --------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 47778888888888889999999999888888876644
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=6.7e-17 Score=160.23 Aligned_cols=194 Identities=13% Similarity=-0.008 Sum_probs=164.4
Q ss_pred cHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHH
Q 040951 362 DAEECKKRGSIETARAIFSHACTVFLTK---KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQA---EVLWLMGAKEKW 435 (701)
Q Consensus 362 ~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~ 435 (701)
.|..+...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.++.
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY 100 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence 5778899999999999999999999999 8999999999999999999999999999998854 678999999999
Q ss_pred H--------cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCh
Q 040951 436 L--------AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNN 507 (701)
Q Consensus 436 ~--------~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~ 507 (701)
. .|++++|+..|++++..+|++..++..+..+....+.. ...++.+|.++...|++
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~----------------~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL----------------ARKQYEAARLYERRELY 164 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHTTCH
T ss_pred HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHccCH
Confidence 9 99999999999999999999876665544333222111 23477889999999999
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhhCCCCHH---HHHHHHHHHhh
Q 040951 508 AEERGFIEEGLKRFPS---FFNLWLMLGQLEERL----------GHLKEAKEAYQSGCNQCPNCIP---LWYSLANLEEK 571 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~ 571 (701)
++|+..|++++..+|+ .+.+++.+|.++... |++++|+..|+++++.+|+++. +...++.++..
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999998 467899999999876 8899999999999999999854 34455555555
No 81
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2.9e-18 Score=176.38 Aligned_cols=350 Identities=10% Similarity=-0.003 Sum_probs=174.7
Q ss_pred hccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHH
Q 040951 285 RLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIERGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAE 364 (701)
Q Consensus 285 ~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~ 364 (701)
++|+.++|..++++. +++.+|..+|..+...|++++|+..|.++-. ...|...+..+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D----------~~~y~~V~~~a-------- 71 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADD----------PSSYMEVVQAA-------- 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCC----------HHHHHHHHHHH--------
Confidence 457889999999887 3356999999999999999999999977521 34566655544
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 365 ECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 365 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
...|++++|+.+++.+.+..|+ +.+...++.++.+.|+++++..+++. | +...|..+|..+...|.+++|+
T Consensus 72 --e~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~ 142 (449)
T 1b89_A 72 --NTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAK 142 (449)
T ss_dssp ----------------------------------------CHHHHTTTTTC-----C-----------------CTTTHH
T ss_pred --HhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHH
Confidence 7789999999999998886444 67788899999999999999888752 4 3459999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 445 DILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
.+|.++ ..|..++.++...|+++.|.+.+.++ .++.+|...+..+...|+++.|..+... +..+|+
T Consensus 143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad- 208 (449)
T 1b89_A 143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD- 208 (449)
T ss_dssp HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH-
T ss_pred HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh-
Confidence 999977 35889999999999999999999998 3689999999999999999999777665 335554
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC-----CCHHHH
Q 040951 525 FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP-----LNPEIW 599 (701)
Q Consensus 525 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~ 599 (701)
-...++.+|.+.|.+++|+.+++.++...+.+..+|..++.++.+ +..++..+.++.|...+...| .++.+|
T Consensus 209 --~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k-y~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 209 --ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCH
T ss_pred --hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 355688899999999999999999999999999999999999885 113566667777766666666 677899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHhcC--CCccchhHHHHHHHhcCCChHHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQK------------CPNSGILWAELIKMV--PHHDRKSKGKDALVKSDRDPHVFAA 665 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~------------~p~~~~l~~~~~~~~--~~~~~~~~~~~al~~~p~~~~~~~~ 665 (701)
..++.+|...++++.|...+-..... .+.+..++...+.+. ..+.....+..++...-+. ..
T Consensus 286 ~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~----~r 361 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDH----TR 361 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCH----HH
T ss_pred HHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCc----HH
Confidence 99999999999999998866443222 344455665544322 2233333333333221121 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 040951 666 VAKLFWHDRKVDKARNWFNKAV 687 (701)
Q Consensus 666 lg~~~~~~g~~~~A~~~~~~al 687 (701)
...++.+.|+..-...+++.+.
T Consensus 362 ~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 362 AVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHH
Confidence 2334455555555555554443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=2.3e-16 Score=165.60 Aligned_cols=231 Identities=10% Similarity=0.021 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFP------QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN-------SE 458 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~-------~~ 458 (701)
.++..|..+...|++++|+..|++++...+ ....++..+|.++...|+++.|+..+++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567788899999999999999999997632 24568899999999999999999999999987543 13
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHhCChHHHHHHHHHHHH-----hCCCCHH
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKARDMGG---T----ERVWMKSAIVERELGNNAEERGFIEEGLK-----RFPSFFN 526 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p---~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 526 (701)
.++..+|.++...|++++|...|++++...+ + ..++..+|.++...|++++|+.+|++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 3677899999999999999999999998542 2 56888999999999999999999999999 7788889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC-----CHHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHhCCCCHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPN-----CIPLWYSLANLEEKRNGLNG---LSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~ 598 (701)
++..+|.++...|++++|...+++++...+. ....+..++.++.. .++ +.+|+..+++. ...|....+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~---~~~~~~~~~al~~~~~~-~~~~~~~~~ 338 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE---TVDERKIHDLLSYFEKK-NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS---SCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhC-CChhHHHHH
Confidence 9999999999999999999999999997543 34456677777778 888 88888888772 223444578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
+..+|.++...|++++|...|+++++..
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998764
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=6.8e-17 Score=182.51 Aligned_cols=187 Identities=14% Similarity=-0.003 Sum_probs=171.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAV--------TYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP 455 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p 455 (701)
..+|+++.+++..+ ...|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45688887777666 77899999999999999 88999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 456 NSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQL 534 (701)
Q Consensus 456 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 534 (701)
++..+|..+|.++...|++++|+..|+++++..|+ ..+|+.+|.++...|++++ +..|+++++.+|++..+++.+|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999998 8999999999999999999 999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCC
Q 040951 535 EERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 535 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~ 577 (701)
+...|++++|+..|+++++.+|++..++..++.++.. .++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~---~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS---GRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc---cCC
Confidence 9999999999999999999999999999999999877 665
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=3.7e-16 Score=163.64 Aligned_cols=272 Identities=15% Similarity=0.103 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------H
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEV-----LWLMGAKEKWLAGDVPAARDILQEAYATIPNSE------E 459 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~------~ 459 (701)
.++...+.++...|++++|...+++++...|.... ++..++.++...|++++|+..+++++...|... .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 46777888899999999999999999998875532 567888999999999999999999998765422 2
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC-----H
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMG--------GT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF-----F 525 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~ 525 (701)
++..++.++...|++++|...+++++... |. ..++..++.++...|++++|..++++++...|.. .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35678999999999999999999999854 22 5567788999999999999999999999988752 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC--CHHHHH-----HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC---
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN--CIPLWY-----SLANLEEKRNGLNGLSKARAVLSVARLKNPLN--- 595 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~-----~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~--- 595 (701)
..+..+|.++...|++++|...+++++...+. ....+. ..+.++.. .|++++|...+++++...|.+
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM---TGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH---CCCHHHHHHHHHhCCCCCCCcchh
Confidence 57889999999999999999999999876332 222222 34455778 999999999999998877643
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 040951 596 -PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDR 674 (701)
Q Consensus 596 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g 674 (701)
...+..++.++...|++++|...+++++...+..+..+. ...++..+|.++...|
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~------------------------~~~~~~~la~~~~~~g 307 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD------------------------LNRNLLLLNQLYWQAG 307 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------------------HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh------------------------HHHHHHHHHHHHHHhC
Confidence 346788999999999999999999999887554331111 1346667788888888
Q ss_pred CHHHHHHHHHHHHHh
Q 040951 675 KVDKARNWFNKAVSL 689 (701)
Q Consensus 675 ~~~~A~~~~~~al~~ 689 (701)
++++|..+|++++..
T Consensus 308 ~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 308 RKSDAQRVLLDALKL 322 (373)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888888765
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.73 E-value=1.5e-17 Score=167.84 Aligned_cols=204 Identities=14% Similarity=0.082 Sum_probs=147.4
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 040951 466 KLEFENRELERARMLLAKARDMGG---T----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF------FNLWLMLG 532 (701)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~a~~~~p---~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la 532 (701)
.++...|++++|...|.+++...+ + ..++..+|.++...|++++|+.+|++++...|.. ..++..+|
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666655421 1 4566677777777777777777777777776542 45778889
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHH-------H
Q 040951 533 QLEERL-GHLKEAKEAYQSGCNQCPNC------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPE-------I 598 (701)
Q Consensus 533 ~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~ 598 (701)
.+|... |++++|+..|++++...|.. ..++..+|.++.. .|++++|+..|++++...|+++. .
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL---DGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999886 99999999999999887754 4578889999999 99999999999999999887653 6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHH--hcCCH
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFW--HDRKV 676 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~ 676 (701)
+..+|.++...|++++|+..|+++++.+|+.+... ....+..++..+. ..+++
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-------------------------~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-------------------------ESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC----------------------------------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-------------------------HHHHHHHHHHHHHcCCHHHH
Confidence 78889999999999999999999999988743211 1233444555554 45779
Q ss_pred HHHHHHHHHHHHhCCCCcccc
Q 040951 677 DKARNWFNKAVSLDPDTGDFW 697 (701)
Q Consensus 677 ~~A~~~~~~al~~~p~~~d~w 697 (701)
++|+..|++++.++|.+...|
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHH
Confidence 999999988888888665443
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.73 E-value=3e-16 Score=145.81 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER 537 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 537 (701)
.++..++..+...|++++|+..|++++...|. ..++..++.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44556666666667777777777776666665 66677777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040951 538 LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADS 617 (701)
Q Consensus 538 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 617 (701)
.|++++|...|++++...|.++.++..++.++.. .|++++|+..+++++...|.++.++..++.++...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN---LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777777777777777777777 7777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCC
Q 040951 618 FIAKALQKCPNS 629 (701)
Q Consensus 618 ~~~~al~~~p~~ 629 (701)
.++++++..|++
T Consensus 166 ~~~~~~~~~~~~ 177 (186)
T 3as5_A 166 HFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHcCCCc
Confidence 777777777665
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.73 E-value=4.3e-17 Score=184.18 Aligned_cols=187 Identities=17% Similarity=0.096 Sum_probs=174.3
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC
Q 040951 418 TYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAY--------ATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG 489 (701)
Q Consensus 418 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p 489 (701)
..+|.++..++..+ ...|++++|+..|++++ ..+|++..+++.++.++...|++++|+..|+++++..|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34778877777666 67899999999999999 88999999999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 040951 490 T-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANL 568 (701)
Q Consensus 490 ~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 568 (701)
+ ..+|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++ +..|+++++.+|++..+|+.+|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 040951 569 EEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGN 611 (701)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 611 (701)
+.. .|++++|+..|+++++.+|++..+|..++.++...|+
T Consensus 544 ~~~---~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSA---EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHH---TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHH---cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999 9999999999999999999999999999999877665
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=6.5e-17 Score=154.22 Aligned_cols=165 Identities=12% Similarity=0.011 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLM----------------LGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 3344444444555555555555555555555554444 677777777777777777777777777
Q ss_pred CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 558 CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGN--KKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 558 ~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
++.++..+|.++.. .|++++|+..|++++..+|+++.+|..+|.++...|+ ...+...+.+++...|
T Consensus 87 ~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 155 (208)
T 3urz_A 87 NVDCLEACAEMQVC---RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-------- 155 (208)
T ss_dssp CHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH--------
T ss_pred CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc--------
Confidence 77777777777776 6777777777777777777777777777766654443 2333444444322111
Q ss_pred HHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 636 LIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 636 ~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
....++..|.++...|++++|+..|++|++++|+
T Consensus 156 -----------------------~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 -----------------------MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -----------------------hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1234555666666677777777777777777775
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.72 E-value=7.8e-17 Score=162.58 Aligned_cols=237 Identities=12% Similarity=-0.009 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 040951 375 ARAIFSHACTVFLTKKSIWLKAAQLEKT--HGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYA 452 (701)
Q Consensus 375 A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~ 452 (701)
|..+++++-+.-+.....| .+ +.. .+++++|...|.++ +.++...|++++|+..|.+++.
T Consensus 4 a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666666655433333 11 111 11366777777666 3455667777777777777777
Q ss_pred hCCC------CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHh-CChHHHHHHHHHHH
Q 040951 453 TIPN------SEEIWLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVEREL-GNNAEERGFIEEGL 518 (701)
Q Consensus 453 ~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~-g~~~~A~~~~~~al 518 (701)
..+. ...++..++.++...|++++|+..|++++...|. ..++..+|.++... |++++|+.+|++++
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 6421 1346667777777778888888888877776542 34677778888775 88888888888888
Q ss_pred HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH-------HHHHHHHHHhhhccCCCHHHHHHHH
Q 040951 519 KRFPSF------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP-------LWYSLANLEEKRNGLNGLSKARAVL 585 (701)
Q Consensus 519 ~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~g~~~~A~~~~ 585 (701)
...|.+ ..++..+|.++...|++++|+..|++++...|.+.. ++..++.++.. .|++++|+..|
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~ 222 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA---ATDAVAAARTL 222 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH---cCCHHHHHHHH
Confidence 877643 456777888888888888888888888887776532 56777888888 88888888888
Q ss_pred HHHHHhCCCCHH-----HHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 586 SVARLKNPLNPE-----IWLATIRAES--KHGNKKEADSFIAKALQKCPNSGIL 632 (701)
Q Consensus 586 ~~a~~~~p~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~al~~~p~~~~l 632 (701)
++++..+|..+. .+..++..+. ..+++++|+..|.+++..+|....+
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 888888776553 2334444443 4566788888887777776654333
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=9e-16 Score=161.08 Aligned_cols=225 Identities=14% Similarity=0.022 Sum_probs=189.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cHHHHHHH
Q 040951 364 EECKKRGSIETARAIFSHACTVFL------TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQ-------AEVLWLMG 430 (701)
Q Consensus 364 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~ 430 (701)
..+...|++++|+..|++++...+ ....++..+|.++...|+++.|...+++++...+. ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344899999999999999998742 24568899999999999999999999999987442 24568899
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-----cCCC-HHHHHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYATIP---N---SEEIWLAAFKLEFENRELERARMLLAKARD-----MGGT-ERVWMKSA 498 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~~p---~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~p~-~~~~~~~a 498 (701)
|.++...|++++|+..|++++...+ + ...++..+|.++...|++++|+..|++++. ..|. ..++..+|
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 9999999999999999999998643 2 234677899999999999999999999998 6666 88899999
Q ss_pred HHHHHhCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 499 IVERELGNNAEERGFIEEGLKRFP-----SFFNLWLMLGQLEERLGH---LKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
.++...|++++|+.++++++...+ .....+..++.++...++ +.+|+..+++. ...|....++..+|.++.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 999999999999999999999854 334566777888888888 88888888773 334445667889999999
Q ss_pred hhccCCCHHHHHHHHHHHHHhC
Q 040951 571 KRNGLNGLSKARAVLSVARLKN 592 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~ 592 (701)
. .|++++|...|++++...
T Consensus 348 ~---~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 S---SCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp H---TTCHHHHHHHHHHHHHHH
T ss_pred H---CCCHHHHHHHHHHHHHHH
Confidence 9 999999999999998753
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=3e-17 Score=147.51 Aligned_cols=145 Identities=14% Similarity=0.020 Sum_probs=102.9
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 040951 464 AFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLK 542 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 542 (701)
+|.++...|++++|+..+++++...|. +..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 455556667777777777777766666 6666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 040951 543 EAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAV-LSVARLKNPLNPEIWLATIRAESKHGN 611 (701)
Q Consensus 543 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~-~~~a~~~~p~~~~~~~~l~~~~~~~g~ 611 (701)
+|+..|+++++.+|+++.+|..+|.++.. .|++++|... ++++++.+|+++.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCK---NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777777777777777777777777 7777655543 477777777777777777777766664
No 92
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=1.2e-16 Score=164.47 Aligned_cols=373 Identities=14% Similarity=0.064 Sum_probs=194.9
Q ss_pred hcCHHHHHHHHHHHHHHCCCCHHHHHHHHh----ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040951 256 ISSEEEARILLHRAVECCPLDVELWLALAR----LETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGNTSMVGKIIE 331 (701)
Q Consensus 256 l~~~~~A~~~l~~a~~~~P~~~~l~~~l~~----l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~~~~a~~~~~ 331 (701)
.++.++|...+++. +++.+|..+++ .+++++|+..|.++ .++..+...+..+...|++++|+.+++
T Consensus 16 ~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 16 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34688888888877 23468877665 37899999999763 456688888999999999999999888
Q ss_pred HHHHHhhcCcccCCHHHHHHHHHHHHHcCCcHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040951 332 RGIRALQGEEVVIDRDTWMKEAEIAEKAGSDAEECKKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIA 411 (701)
Q Consensus 332 ~a~~~~~~~~~~~~~~~w~~~a~~~e~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 411 (701)
.+.+..++.. ....++ ..|.+.|++.++..+++ .| +...|..+|..+...|.+++|..
T Consensus 86 ~ark~~~~~~------i~~~Li----------~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 86 MARKKARESY------VETELI----------FALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp ---------------------------------------CHHHHTTTTT-----CC-----------------CTTTHHH
T ss_pred HHHHhCccch------hHHHHH----------HHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887533311 111122 23477889998887775 25 34599999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCH
Q 040951 412 LLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTE 491 (701)
Q Consensus 412 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~ 491 (701)
+|.++ ..|..+|.++...|++++|++.+.++ +++..|...+..+...|+++.|..+... +... +
T Consensus 144 ~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~--a 207 (449)
T 1b89_A 144 LYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH--A 207 (449)
T ss_dssp HHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC--H
T ss_pred HHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC--H
Confidence 99977 46889999999999999999999998 4788999999999999999999776664 2233 3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhCC-----CCHHHHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER--LGHLKEAKEAYQSGCNQCP-----NCIPLWYS 564 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p-----~~~~~~~~ 564 (701)
.-...++.+|...|.+++|+.+++.++...+....++..+|.+|.+ .++..+.++.|...+.+.| ....+|..
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4444678889999999999999999999999999999999988754 4667777777777777777 67788999
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 565 LANLEEKRNGLNGLSKARAVLSVARLK------------NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGIL 632 (701)
Q Consensus 565 la~~~~~~~~~g~~~~A~~~~~~a~~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l 632 (701)
+..+|.. .++++.|...+-..... .+.+.++++..+.+|. +....+...+..++.-.-+...+
T Consensus 288 ~~~ly~~---~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~ 362 (449)
T 1b89_A 288 LVFLYDK---YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRA 362 (449)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHH
T ss_pred HHHHHHh---hchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHH
Confidence 9999999 99999998866554322 4567788888888887 34444555555555221111111
Q ss_pred HHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 040951 633 WAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWF 683 (701)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 683 (701)
-...-....-+.-+..+ ..++ ..|+..+--.+-.+|....+++.=+...
T Consensus 363 v~~~~~~~~l~l~~~yl-~~v~-~~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 363 VNYFSKVKQLPLVKPYL-RSVQ-NHNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHHTTCTTTTHHHH-HHHH-TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHH-HHHH-HhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 11111111111222222 2222 3467888888999999999987655443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=4.1e-16 Score=148.65 Aligned_cols=168 Identities=10% Similarity=0.060 Sum_probs=134.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 040951 366 CKKRGSIETARAIFSHACTVFLTKKSIWLK----------------AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLM 429 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 429 (701)
+...|++++|+..|++++..+|++..+|.. +|.++...|++++|+..|+++++.+|++..+++.
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 93 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEA 93 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 489999999999999999999999999999 8889999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCh
Q 040951 430 GAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRE--LERARMLLAKARDMGGTERVWMKSAIVERELGNN 507 (701)
Q Consensus 430 ~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~ 507 (701)
+|.++...|++++|+..|+++++.+|++..+|..+|.++...|+ ...+...+.+++...|....++..|..+...|++
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~ 173 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY 173 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCH
Confidence 99999889999999999999999999998888888888866654 4455666666654333345667777777778888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQL 534 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~ 534 (701)
++|+..|+++++.+|++ .....+..+
T Consensus 174 ~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 174 EKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 88888888888888873 333334433
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=4.5e-17 Score=146.31 Aligned_cols=131 Identities=13% Similarity=-0.015 Sum_probs=119.9
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCC
Q 040951 497 SAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLN 576 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g 576 (701)
+|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++.. .|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL---EE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cC
Confidence 567777889999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCH
Q 040951 577 GLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSF-IAKALQKCPNSG 630 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~al~~~p~~~ 630 (701)
++++|+..|+++++.+|+++.+|..+|.++...|++++|... ++++++.+|+++
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 999999999999999999999999999999999999876655 589999999853
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=2.1e-15 Score=145.75 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH---HHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN---LWL 529 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 529 (701)
++..++.+|..+...|++++|+..|++++...|. ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4567888888888999999999999999988776 468888899999999999999999999999988754 678
Q ss_pred HHHHHHHHc------------------CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 530 MLGQLEERL------------------GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 530 ~la~~~~~~------------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
.+|.++... |++++|+..|+++++.+|+++.++..+..+... .+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~---~~~~------------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL---KDRL------------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH---HHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH---HHHH-------------
Confidence 888887653 344555555555555555544333222221111 0000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHH
Q 040951 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFW 671 (701)
Q Consensus 592 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~ 671 (701)
......+|.++...|++.+|+..|+++++..|+++. .+.++..+|.++.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------------------------~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA---------------------------TRDALPLMENAYR 195 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH---------------------------HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc---------------------------cHHHHHHHHHHHH
Confidence 012256788999999999999999999999998531 2578999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCccc
Q 040951 672 HDRKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 672 ~~g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
..|++++|+..|+++....|++.+.
T Consensus 196 ~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HcCCcHHHHHHHHHHHhhCCCchhh
Confidence 9999999999999999999987653
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.68 E-value=2.6e-16 Score=157.17 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=118.9
Q ss_pred HhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTV--------FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYF--------PQAEVLWLMG 430 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~ 430 (701)
...|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++... |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 5677777777777777763 23445566666666666666666666666666542 3344555566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----CCHHHHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYAT--------IPNSEEIWLAAFKLEFENRELERARMLLAKARDMG-----GTERVWMKS 497 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~ 497 (701)
|.++...|++++|+..|++++.. .|....++..++.++...|++++|...|++++... ++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 164 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD------- 164 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------
Confidence 66666666666666666666554 23333344445555555555555555555544430 00
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---------CCCCHHHHHHHHHH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ---------CPNCIPLWYSLANL 568 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~la~~ 568 (701)
.|....++..+|.++...|++++|+..|++++.. .+....+|..++..
T Consensus 165 -----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 165 -----------------------DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred -----------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 3333445555555555555555555555555543 33334445555544
Q ss_pred HhhhccCCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 569 EEKRNGLNG------LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 569 ~~~~~~~g~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
+.. .+. +..+...++......|..+.++..+|.++...|++++|..+|+++++.
T Consensus 222 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 222 EES---KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHT---TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred Hhc---CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 443 222 223333333322233444556666777777777777777777766653
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.68 E-value=4.4e-16 Score=155.50 Aligned_cols=192 Identities=15% Similarity=0.108 Sum_probs=144.1
Q ss_pred cHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHH
Q 040951 362 DAEECKKRGSIETARAIFSHACTVF--------LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTY--------FPQAEV 425 (701)
Q Consensus 362 ~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 425 (701)
.|..+...|++++|+..|++++... |....++..++.++...|++++|...|++++.. +|....
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 128 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 6888899999999999999999873 666779999999999999999999999999988 466778
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---------
Q 040951 426 LWLMGAKEKWLAGDVPAARDILQEAYAT--------IPNSEEIWLAAFKLEFENRELERARMLLAKARDMG--------- 488 (701)
Q Consensus 426 ~~~~~a~~~~~~g~~~~A~~~l~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------- 488 (701)
++..+|.++...|++++|+..|++++.. .|....++..++.++...|++++|...|++++...
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8999999999999999999999999998 56566788889999999999999999999988752
Q ss_pred CC-HHHHHHHHHHHHHhCChH------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 040951 489 GT-ERVWMKSAIVERELGNNA------EERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 489 p~-~~~~~~~a~~~~~~g~~~------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 553 (701)
+. ..+|...+..+...+... .+...+.......|....++..+|.++...|++++|...|+++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 445555555554433322 222222222222344455666666666666666666666666654
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.68 E-value=3.2e-15 Score=144.39 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=156.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHH
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS---EEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWM 495 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~ 495 (701)
.+..++..|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++..|+ +.+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788999999999999999999999999999986 468999999999999999999999999999987 35788
Q ss_pred HHHHHHHH------------------hCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 496 KSAIVERE------------------LGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 496 ~~a~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
.+|.++.. .|++++|+..|+++++.+|+++.++..+..+....+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~----------------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR----------------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-----------------
Confidence 88988775 5789999999999999999987665443332211111
Q ss_pred CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 558 CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP---EIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 558 ~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
.......+|.++.. .|++.+|+..|+++++..|+++ .++..++.++...|++++|+..++++....|++
T Consensus 146 ~~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 LAKYEYSVAEYYTE---RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHH---cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 11234567888888 9999999999999999999886 678999999999999999999999888888865
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.68 E-value=3.6e-14 Score=142.37 Aligned_cols=234 Identities=9% Similarity=0.021 Sum_probs=154.4
Q ss_pred HhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 040951 367 KKRGSI-ETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS----------RESLIALLRKAVTYFPQAEVLWLMGAKEKW 435 (701)
Q Consensus 367 ~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 435 (701)
...|++ ++|+.++..++..+|++..+|...+.+....|. +++++.++..++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 445655 489999999999999999999999988877665 577888888888888888888888888887
Q ss_pred HcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh-------
Q 040951 436 LAG--DVPAARDILQEAYATIPNSEEIWLAAFKLEFENRE-LERARMLLAKARDMGGT-ERVWMKSAIVEREL------- 504 (701)
Q Consensus 436 ~~g--~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~------- 504 (701)
..| ++++++.++.++++.+|.+..+|...+.+....|. +++++..+.+++..+|. ..+|...+.+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 777 47888888888888888888888888877777776 47777777777777776 66777776666554
Q ss_pred -------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhhCCCCHHHHHHHH
Q 040951 505 -------GNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL-----------GHLKEAKEAYQSGCNQCPNCIPLWYSLA 566 (701)
Q Consensus 505 -------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la 566 (701)
+.+++++.++.+++..+|++..+|+.+..++... +.++++++.+.++++..|++.-.+..++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 2355666666666666666666665554444333 2344555555555555555432222222
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 567 NLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 567 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
.+.......|..++.+.++.+.++.+|....-|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 2111000034444555555555555554443333
No 100
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.67 E-value=4.9e-14 Score=141.39 Aligned_cols=231 Identities=18% Similarity=0.127 Sum_probs=197.4
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 401 KTHGSRE-SLIALLRKAVTYFPQAEVLWLMGAKEKWLAGD----------VPAARDILQEAYATIPNSEEIWLAAFKLEF 469 (701)
Q Consensus 401 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~l~~a~~~~p~~~~~~~~la~~~~ 469 (701)
...|.++ +|+.++.+++..+|.+..+|...+.++...+. +++++.+++.++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456555 79999999999999999999999998877655 689999999999999999999999999999
Q ss_pred HcC--cHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------
Q 040951 470 ENR--ELERARMLLAKARDMGGT-ERVWMKSAIVERELGN-NAEERGFIEEGLKRFPSFFNLWLMLGQLEERL------- 538 (701)
Q Consensus 470 ~~~--~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------- 538 (701)
..+ .+++++.++.+++...|. ..+|...+.+....|. +++++.++.+++..+|.+..+|...+.+....
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 888 489999999999999998 9999999999888898 58999999999999999999999999998776
Q ss_pred -------CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccC-----------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 539 -------GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL-----------NGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 539 -------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
+.++++++.+.+++..+|++..+|..+..++.. . +.+++++..+.++++..|++.-.+.
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~---~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA---GSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS---SSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---ccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 458899999999999999999999877666665 3 3578999999999999999965554
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 601 ATIRAES---KHGNKKEADSFIAKALQKCPNSGILWA 634 (701)
Q Consensus 601 ~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~l~~ 634 (701)
.++.+.. ..|..+++...+.+.++.+|-....|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 4444332 357788899999999999997654444
No 101
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.64 E-value=7.9e-14 Score=140.42 Aligned_cols=174 Identities=12% Similarity=0.082 Sum_probs=131.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C-ChHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHG-SRESLIALLRKAVTYFPQAEVLWLMGAKEKWLA-G-DVPAA 443 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-g-~~~~A 443 (701)
...+..++|+.++++++..+|++..+|...+.+....| .+++++..++.++..+|++..+|...+.++... + +++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 34445578999999999999999999999999988888 589999999999999999999999998888876 7 88899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHH--------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCC-------h
Q 040951 444 RDILQEAYATIPNSEEIWLAAFKLEFENRELE--------RARMLLAKARDMGGT-ERVWMKSAIVERELGN-------N 507 (701)
Q Consensus 444 ~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~-------~ 507 (701)
+.++.+++..+|.+..+|...+.+....+.++ ++++.++++++.+|. ..+|...+.+....+. +
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 99999999999999999988888877766665 666666666666655 5566666655555554 4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 508 AEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH 540 (701)
Q Consensus 508 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 540 (701)
++++.++.+++..+|++..+|..+..++...|.
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 556666666666666666666665555555443
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=1.2e-14 Score=145.86 Aligned_cols=167 Identities=14% Similarity=0.021 Sum_probs=106.5
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 040951 421 PQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAI 499 (701)
Q Consensus 421 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~ 499 (701)
|.+...++.+|..+...|++++|+..|++++..+|++..++..++.++...|++++|+..+++++...|+ ...+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 5566666666666666666666666666666666666666666666666666666666666666666665 323333333
Q ss_pred HHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC--HHHHHHHHHHHhhhccCCC
Q 040951 500 VERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC--IPLWYSLANLEEKRNGLNG 577 (701)
Q Consensus 500 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~g~ 577 (701)
.+...++.+.|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++.. .|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~---~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA---LGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH---HCT
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH---cCC
Confidence 34555666666666666666666666666666666666666666666666666666666 6666666666666 666
Q ss_pred HHHHHHHHHHHHH
Q 040951 578 LSKARAVLSVARL 590 (701)
Q Consensus 578 ~~~A~~~~~~a~~ 590 (701)
.++|...|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 6666666666553
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.63 E-value=3.6e-14 Score=142.86 Aligned_cols=243 Identities=10% Similarity=-0.012 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG-DVPAARDILQEAYATIPNSEEIWLAAFKLEFE 470 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~ 470 (701)
++..+..+....+..++|+.++.+++..+|.+..+|...+.++...| .+++++..++.++..+|++..+|...+.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33333444444555678999999999999999999999999999998 59999999999999999999999999999988
Q ss_pred c-C-cHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 471 N-R-ELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNA--------EERGFIEEGLKRFPSFFNLWLMLGQLEERLG 539 (701)
Q Consensus 471 ~-~-~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 539 (701)
. + ++++++.++.+++...|. ..+|...+.+....|.++ +++.+++++++.+|.+..+|...+.+....+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 7 7 899999999999999998 999999998888888777 9999999999999999999999999999888
Q ss_pred C-------HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCH--------------------HHHHHHHHHHHHhC
Q 040951 540 H-------LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGL--------------------SKARAVLSVARLKN 592 (701)
Q Consensus 540 ~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~--------------------~~A~~~~~~a~~~~ 592 (701)
. ++++++.+.+++..+|++..+|..+..++.. .|.. ..........+...
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH---FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 7 7899999999999999999999998888887 5543 22333333332222
Q ss_pred ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHH
Q 040951 593 ------PLNPEIWLATIRAESKHGNKKEADSFIAKAL-QKCPNSGILWAELI 637 (701)
Q Consensus 593 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~l~~~~~ 637 (701)
+.++.++..++.++...|+.++|..++.... +.+|-....|...+
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 4678899999999999999999999999987 45776666665433
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.63 E-value=9.2e-15 Score=162.22 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=94.2
Q ss_pred CcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040951 472 RELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQS 550 (701)
Q Consensus 472 ~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 550 (701)
|++++|+..|+++++..|+ ..+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5666666667666666666 666666666666667777777777777776666666666677766666777777777777
Q ss_pred HhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCC
Q 040951 551 GCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKH---GNKKEADSFIAKALQKCP 627 (701)
Q Consensus 551 al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p 627 (701)
+++.+|++..++..+|.++.. .|++++|+..|+++++.+|+++.++..++.++... |++++|...++++++.+|
T Consensus 83 al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALED---AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 766666666666666666666 66777777777777666666666666666666666 666666666666666666
Q ss_pred C
Q 040951 628 N 628 (701)
Q Consensus 628 ~ 628 (701)
.
T Consensus 160 ~ 160 (568)
T 2vsy_A 160 G 160 (568)
T ss_dssp C
T ss_pred c
Confidence 5
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.63 E-value=2.9e-15 Score=138.53 Aligned_cols=77 Identities=16% Similarity=0.024 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC--HHHHHHHHHHHhhhccCCCHHHHHHHHHH
Q 040951 510 ERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC--IPLWYSLANLEEKRNGLNGLSKARAVLSV 587 (701)
Q Consensus 510 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~g~~~~A~~~~~~ 587 (701)
|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++.. .|+.++|...|++
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~---~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA---LGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH---HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH---hCCCCcHHHHHHH
Confidence 4555555555555555555555555555555555555555555555543 3355555555555 5555555555555
Q ss_pred HH
Q 040951 588 AR 589 (701)
Q Consensus 588 a~ 589 (701)
++
T Consensus 170 al 171 (176)
T 2r5s_A 170 QL 171 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.62 E-value=2.9e-15 Score=138.63 Aligned_cols=167 Identities=13% Similarity=0.002 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 455 PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQ 533 (701)
Q Consensus 455 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 533 (701)
|...+.++..+..+...|++++|+..|++++...|+ +.+++.+|.++...|++++|+..|++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 344445667777777788888888888888777777 77788888888888888888888888888888 7766666555
Q ss_pred HHH-HcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcC
Q 040951 534 LEE-RLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN--PEIWLATIRAESKHG 610 (701)
Q Consensus 534 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~g 610 (701)
+.. ..+....|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|++++..+|+. +.++..++.++...|
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ---VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 532 33344568999999999999999999999999999 999999999999999999875 569999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 040951 611 NKKEADSFIAKALQK 625 (701)
Q Consensus 611 ~~~~A~~~~~~al~~ 625 (701)
+.++|...|++++..
T Consensus 159 ~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 159 QGNAIASKYRRQLYS 173 (176)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 999999999998753
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=1.8e-14 Score=144.60 Aligned_cols=170 Identities=12% Similarity=0.000 Sum_probs=159.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 384 TVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA 463 (701)
Q Consensus 384 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~ 463 (701)
...|.+...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+....++.
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999976666666
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 040951 464 AFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF--FNLWLMLGQLEERLGH 540 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~ 540 (701)
.+..+...++.+.|+..|++++...|+ ..+++.+|.++...|++++|+..|.+++..+|++ ..++..++.++...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 777788888999999999999999999 9999999999999999999999999999999998 8899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 040951 541 LKEAKEAYQSGCN 553 (701)
Q Consensus 541 ~~~A~~~~~~al~ 553 (701)
.++|...|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999875
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.60 E-value=1.6e-14 Score=125.15 Aligned_cols=116 Identities=15% Similarity=0.031 Sum_probs=72.8
Q ss_pred cCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHH
Q 040951 487 MGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSL 565 (701)
Q Consensus 487 ~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 565 (701)
++|+ ...+...|..+...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 555556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 566 ANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 566 a~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
|.++.. .|++++|+..|+++++.+|++++++..++.+
T Consensus 88 g~~~~~---~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVA---MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH---CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 666666 6666666666666666666666666555544
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.60 E-value=3.9e-14 Score=157.16 Aligned_cols=164 Identities=18% Similarity=0.143 Sum_probs=140.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHH
Q 040951 437 AGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIE 515 (701)
Q Consensus 437 ~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~ 515 (701)
.|++++|+..|+++++.+|++..++..++.++...|++++|...|+++++..|+ ..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccC---CCHHHHHHHHHHHHHhC
Q 040951 516 EGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL---NGLSKARAVLSVARLKN 592 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---g~~~~A~~~~~~a~~~~ 592 (701)
++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++.. . |++++|...|++++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR---LCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hhccccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999 9 99999999999999999
Q ss_pred CCCHHHHHHHH
Q 040951 593 PLNPEIWLATI 603 (701)
Q Consensus 593 p~~~~~~~~l~ 603 (701)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99887776665
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=3.7e-15 Score=133.14 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=55.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 514 IEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 514 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
+++++..+|+++..++.+|.++...|++++|+..|++++..+|+++.+|..+|.++.. .|++++|+..|++++..+|
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~---~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI---KEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HccHHHHHHHHHHHHhhCC
Confidence 3444444444444455555555555555555555555555555555555555555544 4555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 594 LNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 594 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
+++.+|+.+|.++...|++++|+..|+++++..|+
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 54455555555555555555555555555444443
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=3.9e-14 Score=122.67 Aligned_cols=117 Identities=14% Similarity=-0.007 Sum_probs=108.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 516 EGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
++..++|+....+..+|..+...|++++|+..|+++++.+|.++.+|..+|.++.. .|++++|+..|+++++.+|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK---LMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh---hccHHHHHHHHHHHHHhhhhh
Confidence 34457898899999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 596 PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 596 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
+.+|..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 9999999999999999999999999999999997655544
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.57 E-value=4.2e-15 Score=132.77 Aligned_cols=117 Identities=10% Similarity=-0.026 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 477 ARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 477 A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
+-..+++++...|+ ..+++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33455666677787 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 556 p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
|+++.+|+.+|.++.. .|++++|+..|++++...|+++
T Consensus 101 P~~~~~~~~lg~~~~~---lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLR---LKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999 9999999999999999999875
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=6.9e-14 Score=141.96 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=100.6
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC--C----HHHHHHHHH
Q 040951 467 LEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS--F----FNLWLMLGQ 533 (701)
Q Consensus 467 ~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~ 533 (701)
++...|++++|...|.+++...+. ..++..++.++...|++++|+.+|++++...+. + ..++..+|.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555555543321 345555666666667777777777766666432 1 345666777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 040951 534 LEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN------PEIWLA 601 (701)
Q Consensus 534 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~ 601 (701)
+|.. |++++|+..|++++...|.. ..++..+|.++.. .|++++|+..|++++...|.+ ...+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR---QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 7766 77777777777777665543 4566777777777 777777777777777765433 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 602 TIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 602 l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
++.++...|++++|...|++++ ..|..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 6777777777777777777777 77754
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=4.2e-13 Score=116.95 Aligned_cols=134 Identities=25% Similarity=0.336 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
.+|+.++.++...|++++|+..+++++...|.+...+..+|.++...|++++|...+++++...|.++.++..++.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 45777888888889999999999999999998888899999999999999999999999999999998899999999998
Q ss_pred hccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 572 RNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 572 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
.|++++|+..+++++...|.++.++..++.++...|++++|...+.+++...|+
T Consensus 82 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 ---QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred ---hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999998899999999999999999999999999988885
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.55 E-value=2.8e-14 Score=138.96 Aligned_cols=201 Identities=14% Similarity=0.023 Sum_probs=164.5
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCcHHHHHHHHHHHHhcCCC------------------
Q 040951 436 LAGDVPAARDILQEAYATIPNSEEIWLAA-------FKLEFENRELERARMLLAKARDMGGT------------------ 490 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~a~~~~p~------------------ 490 (701)
..++...|+..|.+++..+|+..++|+.+ +.++...++..+++..+.+.+...|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46777888888888888888888888877 67777777777777777777764432
Q ss_pred ----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC--HHHHHH
Q 040951 491 ----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC--IPLWYS 564 (701)
Q Consensus 491 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~ 564 (701)
..+++.++.++...|++++|...|..++...|++. ..+.+|.++.+.+++++|+..|+.+....+.. ..+++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 35667788999999999999999999998889877 88999999999999999999999776643221 357899
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 040951 565 LANLEEKRNGLNGLSKARAVLSVARLKN--PL-NPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641 (701)
Q Consensus 565 la~~~~~~~~~g~~~~A~~~~~~a~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~ 641 (701)
+|.++.. .|++++|+..|+++.... |. .+++++.+|.++...|+.++|..+|++++..+|+ +.++..+.....
T Consensus 177 LG~al~~---LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~ 252 (282)
T 4f3v_A 177 HGVAAAN---LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTC
T ss_pred HHHHHHH---CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCC
Confidence 9999999 999999999999998544 55 5678999999999999999999999999999998 877777665443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.55 E-value=8.5e-14 Score=141.30 Aligned_cols=221 Identities=13% Similarity=0.005 Sum_probs=172.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 040951 368 KRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDIL 447 (701)
Q Consensus 368 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l 447 (701)
..|++++|..+++++.+..+.. ++...++++.|...|.++ +.++...|++++|+..|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 4678889999999998877643 111147888888888876 45677889999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHH
Q 040951 448 QEAYATIPNS------EEIWLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGNNAEERGFI 514 (701)
Q Consensus 448 ~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~~~~A~~~~ 514 (701)
.+++...+.. ..++..++.++...|++++|+..|++++...+. ..++..+|.++.. |++++|+.+|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 9988876432 346778889999999999999999999886432 4677888999888 9999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHhhhccCCCHHHHH
Q 040951 515 EEGLKRFPSF------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 515 ~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~g~~~~A~ 582 (701)
++++...|.. ..++..+|.++...|++++|+..|++++...|.+ ...+..++.++.. .|++++|+
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~---~g~~~~A~ 215 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH---RADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH---cCCHHHHH
Confidence 9999887653 5678899999999999999999999999876654 3467888888888 99999999
Q ss_pred HHHHHHHHhCCCCHH-----HHHHHHHHHHhcCCHHHHHH
Q 040951 583 AVLSVARLKNPLNPE-----IWLATIRAESKHGNKKEADS 617 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 617 (701)
..|++++ .+|.... ....++..+ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 8886542 334444444 4566655444
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.54 E-value=3.4e-14 Score=138.38 Aligned_cols=218 Identities=15% Similarity=0.043 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCh
Q 040951 369 RGSIETARAIFSHACTVFLTKKSIWLKA-------AQLEKTHGSRESLIALLRKAVTYFPQAEVLWLM-GAKEKWLAGDV 440 (701)
Q Consensus 369 ~~~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~g~~ 440 (701)
.+++..|+..|.+++..+|+...+|+.+ +.++...+...+++..+++.+...|.....++. .+. | |++
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~-y---~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL-Y---GDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT-T---CCC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc-c---ccc
Confidence 4566666666666666666666666666 455555555555555555555544422111111 000 0 000
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 040951 441 PAARDILQEAYAT-IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLK 519 (701)
Q Consensus 441 ~~A~~~l~~a~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 519 (701)
.. --+-.++++.++.++...|++++|.++|+.+....|.....+.++.++...+++++|+..|+.+..
T Consensus 95 -----------~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 95 -----------TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp -----------EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred -----------ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 00 000023344445555555555555555555444444411444555555555555555555554433
Q ss_pred hCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC--CC-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC
Q 040951 520 RFPSF--FNLWLMLGQLEERLGHLKEAKEAYQSGCNQC--PN-CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 520 ~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 594 (701)
..+.. ..+++.+|.++...|++++|+..|++++... |. .+++++.+|.++.. +|+.++|+..|++++..+|+
T Consensus 164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~---lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS---QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSCC
T ss_pred cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCc
Confidence 21110 2345555555555555555555555554322 33 33455555555555 55555555555555555555
Q ss_pred CHHHHHHHHHH
Q 040951 595 NPEIWLATIRA 605 (701)
Q Consensus 595 ~~~~~~~l~~~ 605 (701)
+.++..+...
T Consensus 241 -~~~~~aL~~~ 250 (282)
T 4f3v_A 241 -PKVAAALKDP 250 (282)
T ss_dssp -HHHHHHHHCT
T ss_pred -HHHHHHHhCC
Confidence 5555544443
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.54 E-value=6.4e-13 Score=115.79 Aligned_cols=135 Identities=27% Similarity=0.415 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
..++.+|.++...|++++|...|++++...|.+...+..++.++.. .|++++|+..+++++...|.++.++..++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH---hcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 606 ESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
+...|++++|...+++++...|. ++.++..+|.++...|++++|..+|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPR------------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999999999999998886 477888899999999999999999999
Q ss_pred HHHhCCCC
Q 040951 686 AVSLDPDT 693 (701)
Q Consensus 686 al~~~p~~ 693 (701)
++..+|++
T Consensus 129 ~~~~~~~~ 136 (136)
T 2fo7_A 129 ALELDPRS 136 (136)
T ss_dssp HHHHSTTC
T ss_pred HHccCCCC
Confidence 99999863
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.52 E-value=5.2e-14 Score=125.76 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=84.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 512 GFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 512 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++.. .|++++|+..|++++..
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA---MGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhc
Confidence 456677777777777777777777777777777777777777777777777777777777 77777777777777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 592 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
+|+++.+++.+|.++...|++++|+..|+++++..|++
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 77777777777777777777777777777777776653
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.50 E-value=7.7e-14 Score=124.68 Aligned_cols=121 Identities=14% Similarity=0.045 Sum_probs=113.7
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 040951 477 ARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC 555 (701)
Q Consensus 477 A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 555 (701)
+...|++++...|. ...++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++..+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568888888888 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 556 PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 556 p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
|+++.+++.+|.++.. .|++++|+..|++++...|+++....
T Consensus 86 p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQ---XGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999 99999999999999999998876543
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.50 E-value=1e-13 Score=138.64 Aligned_cols=198 Identities=11% Similarity=0.021 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 455 PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQ 533 (701)
Q Consensus 455 p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 533 (701)
|.+...+..+|..+...|++++|+..|++++...|+ ..++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344555666666666666666666666666666665 6666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 040951 534 LEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKK 613 (701)
Q Consensus 534 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 613 (701)
++...|++++|+..|+++++.+|++...+...+..... ..++...........|.++.+...++.+. .|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR------IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 66666777777777766666666542111111111111 11222223333344556666655555544 46666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhC
Q 040951 614 EADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHD-RKVDKARNWFNKAVSLD 690 (701)
Q Consensus 614 ~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 690 (701)
+|+..++++++..|+ +......++.++... +.+++|..+|.++.+..
T Consensus 153 ~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHED------------------------------DGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSC------------------------------HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccc------------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 666666666666664 344555555555554 66778888888776643
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.49 E-value=7.7e-15 Score=150.84 Aligned_cols=153 Identities=11% Similarity=-0.003 Sum_probs=129.3
Q ss_pred cCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 040951 471 NRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---------------FNLWLMLGQL 534 (701)
Q Consensus 471 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 534 (701)
.+++++|+..+++++...|. ...+..+|.++...|++++|+..|++++...|.+ ..++..+|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665 6777777888778888888888888888888877 5899999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 040951 535 EERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKE 614 (701)
Q Consensus 535 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 614 (701)
+...|++++|+..|++++..+|+++.+++.+|.++.. .|++++|+..|++++..+|+++.++..++.++...|++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA---VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999999999988
Q ss_pred H-HHHHHHHHHhC
Q 040951 615 A-DSFIAKALQKC 626 (701)
Q Consensus 615 A-~~~~~~al~~~ 626 (701)
| ...|.+++...
T Consensus 283 a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 283 REKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8 56777777653
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.48 E-value=1.6e-13 Score=137.23 Aligned_cols=191 Identities=13% Similarity=-0.018 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 387 LTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFK 466 (701)
Q Consensus 387 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~ 466 (701)
|.+...+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 467 LEFENRELERARMLLAKARDMGGT------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH 540 (701)
Q Consensus 467 ~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 540 (701)
++...|++++|+..|++++...|+ ..++..+. ..++...........|.++.+...++.+. .|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~ 150 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------IAKKKRWNSIEERRIHQESELHSYLTRLI--AAE 150 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 777777777777777777766553 12222111 11122222233344555566655555553 466
Q ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccC-CCHHHHHHHHHHHHH
Q 040951 541 LKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGL-NGLSKARAVLSVARL 590 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-g~~~~A~~~~~~a~~ 590 (701)
+++|++.|+++++..|.+..+...+..++.. . +.+++|..+|.++..
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAK---HDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH---HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHH---HHHHHHHHHHHHHhhhc
Confidence 6677777777776666666665555555554 3 456666666666554
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.47 E-value=2.1e-13 Score=120.97 Aligned_cols=114 Identities=15% Similarity=0.091 Sum_probs=75.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 512 GFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 512 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|.++.+|..+|.++.. .|++++|+..|++++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS---LGLYEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhc
Confidence 345566666666666666666666666666666666666666666666666666666666 66666666666666666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 592 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
+|+++.++..+|.++...|++++|+..|++++...|+
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666666666666666666666664
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.47 E-value=5.6e-12 Score=120.15 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 040951 375 ARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG----DVPAARDILQEA 450 (701)
Q Consensus 375 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g----~~~~A~~~l~~a 450 (701)
|+..|+++.+. .++.++..++.++...+++++|+..|++++.. .++.+++.++.++.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44455555543 45555555555555555555555555555443 345555555555544 3 555555555555
Q ss_pred HHhCCCCHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH----hCChHHHHHHHHHHHH
Q 040951 451 YATIPNSEEIWLAAFKLEFE----NRELERARMLLAKARDMGGT---ERVWMKSAIVERE----LGNNAEERGFIEEGLK 519 (701)
Q Consensus 451 ~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~p~---~~~~~~~a~~~~~----~g~~~~A~~~~~~al~ 519 (701)
.+ +.++.++..++.++.. .+++++|+..|+++.+..|. +.+++.++.++.. .+++++|+.+|++++.
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 33 3344555555555544 44455555555555444442 4444444444444 3444444444444444
Q ss_pred hCCCCHHHHHHHHHHHH
Q 040951 520 RFPSFFNLWLMLGQLEE 536 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~ 536 (701)
. |.++..++.+|.+|.
T Consensus 158 ~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp T-SCTTHHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHH
Confidence 4 333344444444443
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.45 E-value=4.3e-12 Score=120.95 Aligned_cols=179 Identities=16% Similarity=0.046 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----cHHHHHHHHHH
Q 040951 408 SLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENR----ELERARMLLAK 483 (701)
Q Consensus 408 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~ 483 (701)
+|...|+++.+. .++.+++.++.++...+++++|+.+|+++.+. .++.++..++.+|.. + ++++|+..|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 466777777765 67788888888888888888888888888764 467788888888776 6 78888888888
Q ss_pred HHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHhh
Q 040951 484 ARDMGGTERVWMKSAIVERE----LGNNAEERGFIEEGLKRFPS--FFNLWLMLGQLEER----LGHLKEAKEAYQSGCN 553 (701)
Q Consensus 484 a~~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~----~~~~~~A~~~~~~al~ 553 (701)
+.+. ..+..++.++.++.. .+++++|+.+|++++...|. ++.+++.+|.+|.. .+++++|+..|++++.
T Consensus 79 A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 79 AVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8543 237777788877766 67888888888888877773 47788888888877 7778888888888877
Q ss_pred hCCCCHHHHHHHHHHHhhhc---cCCCHHHHHHHHHHHHHhCC
Q 040951 554 QCPNCIPLWYSLANLEEKRN---GLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~~---~~g~~~~A~~~~~~a~~~~p 593 (701)
. |.++.++..++.++..-. ...++++|+.+|+++.+...
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6 666677778888776500 01278888888888877643
No 127
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.45 E-value=8.7e-12 Score=123.03 Aligned_cols=245 Identities=9% Similarity=-0.022 Sum_probs=181.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKK-SIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARD 445 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 445 (701)
+-.|+|..++.- +-+..|.+. .......+.++..|++.... ..+....+...++..+. ++ |+.
T Consensus 24 fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~ 87 (310)
T 3mv2_B 24 YYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIE 87 (310)
T ss_dssp HTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCH
T ss_pred HHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHH
Confidence 668999998873 333444443 34445567777788776421 11222334455555542 22 788
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC--C-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGG--T-ERVWMKSAIVERELGNNAEERGFIEEGLKRFP 522 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p--~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 522 (701)
.|++.+...+.+...+..+|.++...|++++|++++.+.+...| . ..++...++++...|+.+.|.+.++++.+.+|
T Consensus 88 ~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 88 ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 88888877666677778899999999999999999999998886 4 88888999999999999999999999999988
Q ss_pred C----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh---
Q 040951 523 S----FFNLWLML--GQLEERLG--HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLK--- 591 (701)
Q Consensus 523 ~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~--- 591 (701)
+ +..+...+ +.+....| ++.+|..+|+++...+|+.......+. ++.. +|++++|...++.+++.
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~---~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQ---QRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHH---HTCHHHHHHHHHHHHSHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHH---cCCHHHHHHHHHHHHHhccc
Confidence 3 23333333 54465556 899999999999888887222222222 7888 99999999999977765
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 592 -------NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633 (701)
Q Consensus 592 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~ 633 (701)
+|++++++.+++.+....|+ +|.++++++.+..|+++.+.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 48899999898888888887 88899999999999876443
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=2.1e-13 Score=140.05 Aligned_cols=154 Identities=16% Similarity=0.006 Sum_probs=142.6
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---------------HHHHHHHHH
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---------------IPLWYSLAN 567 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 567 (701)
..+++++|+..+++++...|.+...+..+|.++...|++++|+..|++++...|.+ ..+|..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999999999999999999999999999998 689999999
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchh
Q 040951 568 LEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKS 647 (701)
Q Consensus 568 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~ 647 (701)
++.. .|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++.+|+
T Consensus 205 ~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------------------- 262 (336)
T 1p5q_A 205 CHLK---LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN------------------- 262 (336)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-------------------
T ss_pred HHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------------
Confidence 9999 999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 040951 648 KGKDALVKSDRDPHVFAAVAKLFWHDRKVDKA-RNWFNKAVSL 689 (701)
Q Consensus 648 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~ 689 (701)
++.++..+|.++...|++++| ...|++++..
T Consensus 263 -----------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 263 -----------NKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999998 5677777653
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.44 E-value=4.1e-13 Score=119.05 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 479 MLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 479 ~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
..|++++...|+ ...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 345556666665 6677777777777888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 558 CIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLAT 602 (701)
Q Consensus 558 ~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 602 (701)
++.+++.+|.++.. .|++++|+..|++++..+|+++..+...
T Consensus 85 ~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 85 EPRFPFHAAECHLQ---LGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp CTHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CcHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88888888888888 8888888888888888777776554433
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=1.2e-12 Score=120.77 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=104.6
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHH-HhhhccCCCH--
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANL-EEKRNGLNGL-- 578 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~g~~-- 578 (701)
...|++++|+..+++++..+|.++.+|..+|.++...|++++|+..|++++...|.++.++..+|.+ +.. .|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~---~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ---ASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH---TTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---cCCcch
Confidence 3457788888888888888888888888888888888888888888888888888888888888888 777 8887
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 579 SKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 579 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
++|+..|++++..+|+++.++..+|.++...|++++|...|.+++...|+++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 8888888888888888888888888888888888888888888888888754
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=1.3e-12 Score=120.68 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=117.2
Q ss_pred HHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhcCCH--
Q 040951 536 ERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA-ESKHGNK-- 612 (701)
Q Consensus 536 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~g~~-- 612 (701)
...|++++|+..|++++...|.++.+|..+|.++.. .|++++|+..|++++..+|+++.++..+|.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW---QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 457899999999999999999999999999999999 9999999999999999999999999999999 8899998
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 613 KEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPD 692 (701)
Q Consensus 613 ~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 692 (701)
++|...+++++..+|+ ++.++..+|.++...|++++|..+|+++++.+|+
T Consensus 98 ~~A~~~~~~al~~~p~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN------------------------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCC------------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999999999887 4888899999999999999999999999999999
Q ss_pred Ccccc
Q 040951 693 TGDFW 697 (701)
Q Consensus 693 ~~d~w 697 (701)
+.+.+
T Consensus 148 ~~~~~ 152 (177)
T 2e2e_A 148 RINRT 152 (177)
T ss_dssp TSCHH
T ss_pred CccHH
Confidence 87654
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.42 E-value=7.4e-12 Score=113.76 Aligned_cols=133 Identities=11% Similarity=-0.089 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...+..+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHhC
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIR--AESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~ 626 (701)
. .|++++|+..|++++..+|.++.++..++. .+...|++++|+..+.++....
T Consensus 93 ~---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 A---LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp H---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9 999999999999999999999988855444 4778899999999998876653
No 133
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=6.9e-11 Score=116.59 Aligned_cols=183 Identities=12% Similarity=0.032 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 409 LIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP--NSEEIWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 409 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
|+..|++.+...+.+...++.+|.++...|++++|+.++.+.+..+| ++.+++...+.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45555555544444444455666666666666666666666665554 5555666666666666666666666666666
Q ss_pred cCC-----CHHHHHHHH--HHHHHhC--ChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-
Q 040951 487 MGG-----TERVWMKSA--IVERELG--NNAEERGFIEEGLKRFPS--FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ- 554 (701)
Q Consensus 487 ~~p-----~~~~~~~~a--~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 554 (701)
..| +..+...++ .+....| ++..|..+|+++...+|+ ++.+++. ++..+|++++|...++.+++.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 555 223333332 2233334 666666677666666665 2222222 566667777777777665554
Q ss_pred ---------CCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 555 ---------CPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 555 ---------~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 599 (701)
+|+++.+...++.+... .|+ +|.++++++.+.+|++|.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~---lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALM---QGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHH---TTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHH---hCh--HHHHHHHHHHHhCCCChHHH
Confidence 36666666666666666 665 66677777777777766444
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=5e-12 Score=109.32 Aligned_cols=114 Identities=16% Similarity=0.036 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...|...|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhccCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKN------PLNPEIWLATIRAES 607 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~ 607 (701)
. .|++++|+..|++++..+ |+++.++..+..+..
T Consensus 84 ~---~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 A---VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp H---TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred H---HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 7 777777777777777777 777666666665543
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=1e-11 Score=118.19 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
..++.+|.++...|++++|+..|++++ +.++.++..+|.++.. .|++++|+..|++++..+|+++.+|..+|.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTI---LKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 346778888999999999999999885 3377899999999999 9999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040951 606 ESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNK 685 (701)
Q Consensus 606 ~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 685 (701)
+...|++++|+..|+++++..|.++.+... ...+...|..+.+++.+|.++...|++++|...|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYK--------------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECG--------------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHH--------------HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999998875421100 001123345578999999999999999999999999
Q ss_pred HHHhCCCCcc
Q 040951 686 AVSLDPDTGD 695 (701)
Q Consensus 686 al~~~p~~~d 695 (701)
+++.+|++..
T Consensus 147 al~~~p~~~~ 156 (213)
T 1hh8_A 147 ATSMKSEPRH 156 (213)
T ss_dssp HHTTCCSGGG
T ss_pred HHHcCccccc
Confidence 9999997654
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=1.2e-12 Score=143.37 Aligned_cols=187 Identities=7% Similarity=0.001 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--
Q 040951 371 SIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGS----------RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAG-- 438 (701)
Q Consensus 371 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-- 438 (701)
..++|+..+.+++..+|++..+|...+.+....|+ ++++...+++++..+|++..+|...+.++...|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34788999999999999999999999999999888 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh------------
Q 040951 439 DVPAARDILQEAYATIPNSEEIWLAAFKLEFENR-ELERARMLLAKARDMGGT-ERVWMKSAIVEREL------------ 504 (701)
Q Consensus 439 ~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~------------ 504 (701)
++++++..++++++.+|.+..+|...+.+....| .++++++.+.++++.+|. ..+|...+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 6799999999999999999999999999999999 899999999999999998 88999998887764
Q ss_pred --CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHhhhCCC
Q 040951 505 --GNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE------------AKEAYQSGCNQCPN 557 (701)
Q Consensus 505 --g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~------------A~~~~~~al~~~p~ 557 (701)
+.++++++++.+++..+|++..+|+.++.++...+.+++ |+..|.+++...|.
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 456889999999999999999999999999888877655 44556666666654
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.39 E-value=6.9e-13 Score=125.05 Aligned_cols=152 Identities=13% Similarity=-0.057 Sum_probs=99.8
Q ss_pred HHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH----------------HHHHHH
Q 040951 469 FENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFF----------------NLWLML 531 (701)
Q Consensus 469 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l 531 (701)
...|.++++.+.+.......+. ...+...|..+...|++++|+..|.+++...|.++ .++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3344555555544433333232 45566666667777777777777777777766665 777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 040951 532 GQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGN 611 (701)
Q Consensus 532 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 611 (701)
|.++...|++++|+..|++++..+|.++.+++.+|.++.. .|++++|+..|++++..+|+++.++..++.++...++
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY---FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888 8888888888888888888888888888888777776
Q ss_pred HHHHH-HHHHHHH
Q 040951 612 KKEAD-SFIAKAL 623 (701)
Q Consensus 612 ~~~A~-~~~~~al 623 (701)
..++. ..+.+.+
T Consensus 172 ~~~~~~~~~~~~f 184 (198)
T 2fbn_A 172 ARKKDKLTFGGMF 184 (198)
T ss_dssp HHC----------
T ss_pred HHHHHHHHHHHHh
Confidence 66655 3344433
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.38 E-value=1.9e-11 Score=110.95 Aligned_cols=133 Identities=8% Similarity=-0.090 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 525 FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIR 604 (701)
Q Consensus 525 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 604 (701)
...+..+|.++...|++++|...|++++...|.+..++..+|.++.. .|++++|+..|++++..+|.++.+|..+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR---TECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHH--HHHHHHHHhcCCHHHHHHH
Q 040951 605 AESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVF--AAVAKLFWHDRKVDKARNW 682 (701)
Q Consensus 605 ~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~ 682 (701)
++...|++++|...|+++++.+|.+ +.++ ...+..+...|++++|+.+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~~~~~~~~~~~~~~A~~~ 139 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHD------------------------------KDAKMKYQECNKIVKQKAFERAIAG 139 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTC------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCC------------------------------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999975 4444 4455557788999999999
Q ss_pred HHHHHHhC
Q 040951 683 FNKAVSLD 690 (701)
Q Consensus 683 ~~~al~~~ 690 (701)
+.++....
T Consensus 140 ~~~~~~~~ 147 (166)
T 1a17_A 140 DEHKRSVV 147 (166)
T ss_dssp HHHHHHHH
T ss_pred ccchHHHh
Confidence 99987654
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.38 E-value=1.6e-11 Score=106.14 Aligned_cols=119 Identities=14% Similarity=0.012 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 56777778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNK 612 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 612 (701)
. .|++++|+..|++++...|+++.++..++.++...|++
T Consensus 92 ~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 S---LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp H---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred H---hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8 88888888888888888888888888888888777764
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-11 Score=107.81 Aligned_cols=118 Identities=16% Similarity=0.019 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...|+.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|+++++..|.+..++..+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGN 611 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 611 (701)
. .|++++|+..|++++..+|.+..++..++.++...|+
T Consensus 96 ~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 A---MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp H---TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred H---HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8 8888888888888888888888888888888776653
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.37 E-value=1.8e-11 Score=116.56 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGH 540 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 540 (701)
++.+|..+...|++++|+..|++++ .|.+.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3455556666666666666666653 33455666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhhCCCCH----------------HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC
Q 040951 541 LKEAKEAYQSGCNQCPNCI----------------PLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN 595 (701)
Q Consensus 541 ~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 595 (701)
+++|+..|++++...|.+. .++..+|.++.. .|++++|+..|++++...|++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK---KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH---ccCHHHHHHHHHHHHHcCccc
Confidence 6666666666666665544 666666666666 677777777777776666654
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1e-11 Score=107.28 Aligned_cols=102 Identities=17% Similarity=0.005 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLA 601 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 601 (701)
|.....+..+|..+...|++++|+..|++++..+|.++.+|..+|.++.. .|++++|+..|++++..+|+++.+|..
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK---LMSFPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34567899999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 602 TIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 602 l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
+|.++...|++++|+..|+++++.+
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.36 E-value=5.4e-11 Score=119.66 Aligned_cols=172 Identities=10% Similarity=-0.053 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HH
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSFF------NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IP 560 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 560 (701)
.+...+..+...|++++|+..+.+++...|... ..+..+|.++...|++++|+..|++++...+.. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556667788888888888888888777643 345667888888899999999999998765543 56
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 561 LWYSLANLEEKRNGLNGLSKARAVLSVAR---LKNPLNP----EIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633 (701)
Q Consensus 561 ~~~~la~~~~~~~~~g~~~~A~~~~~~a~---~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~ 633 (701)
++..+|.++.. .|++++|+..|++++ ...|++. .++..+|.++...|++++|..++++++...+...
T Consensus 157 ~~~~lg~~y~~---~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~--- 230 (293)
T 2qfc_A 157 IENAIANIYAE---NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--- 230 (293)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC---
Confidence 78999999999 999999999999999 5567654 5889999999999999999999999998754210
Q ss_pred HHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhCC
Q 040951 634 AELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKA-RNWFNKAVSLDP 691 (701)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~p 691 (701)
....-+.++..+|.++...|++++| ..+|++|+.+..
T Consensus 231 ---------------------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 231 ---------------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp ---------------------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 0011267889999999999999999 888999997653
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=3.8e-11 Score=131.46 Aligned_cols=189 Identities=12% Similarity=0.081 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC--C
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRE----------LERARMLLAKARDMGGT-ERVWMKSAIVERELG--N 506 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g--~ 506 (701)
.++|+..+++++..+|++..+|...+.++...|+ +++++..+++++..+|. ..+|...+.++...| +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3456677777777777777777766666666665 77777777777777776 777777777777777 5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcc-----------
Q 040951 507 NAEERGFIEEGLKRFPSFFNLWLMLGQLEERLG-HLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNG----------- 574 (701)
Q Consensus 507 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------- 574 (701)
+++++.+++++++.+|.+..+|...+.+....| .++++++.+.++++.+|.+..+|...+.++...+.
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 588888888888888888888888888888888 78888888888888888888888888887765110
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH------------HHHHHHHHHHhCCC
Q 040951 575 LNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKE------------ADSFIAKALQKCPN 628 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~al~~~p~ 628 (701)
.+.++++++.+.+++..+|++..+|..++.++...+.+++ |+..|.+++...|.
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 1557999999999999999999999999999998887655 44446666666654
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.35 E-value=1.5e-12 Score=122.80 Aligned_cols=162 Identities=16% Similarity=0.013 Sum_probs=98.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Q 040951 401 KTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARML 480 (701)
Q Consensus 401 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 480 (701)
...|.++.+.+.+.......+.....+...|..+...|++++|+..|.+++...|.++..... . ...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~-------~~~---- 81 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I-------LLD---- 81 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H-------HHH----
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h-------HHH----
Confidence 334444444444444443334444455555555555555555555555555554443310000 0 000
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH
Q 040951 481 LAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP 560 (701)
Q Consensus 481 ~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 560 (701)
....+ ...++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+..
T Consensus 82 ~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 82 KKKNI----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 00000 02677788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhhccCCCHHHHH
Q 040951 561 LWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 561 ~~~~la~~~~~~~~~g~~~~A~ 582 (701)
++..++.++.. .++..++.
T Consensus 158 ~~~~l~~~~~~---~~~~~~~~ 176 (198)
T 2fbn_A 158 IRNSYELCVNK---LKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHH---HHHHHC--
T ss_pred HHHHHHHHHHH---HHHHHHHH
Confidence 88888888877 66665555
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.35 E-value=2.4e-11 Score=105.62 Aligned_cols=106 Identities=16% Similarity=0.038 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 521 FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWL 600 (701)
Q Consensus 521 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 600 (701)
.|.+...+..+|.++...|++++|+..|++++...|.+..++..+|.++.. .|++++|+..|++++..+|+++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK---LLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT---TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCchHHHH
Confidence 356688999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 601 ATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 601 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
.+|.++...|++++|...++++++.+|.+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999874
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.34 E-value=5e-11 Score=100.97 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|...+++++...|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 606 (701)
. .|++++|+..|++++..+|+++.++..++.+.
T Consensus 84 ~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 F---LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp H---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred H---HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 7 77777777777777777777777777766654
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=6e-11 Score=101.55 Aligned_cols=117 Identities=25% Similarity=0.300 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...|+.++.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++...|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHG 610 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 610 (701)
. .|++++|...|++++..+|+++.++..++.++...|
T Consensus 89 ~---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 K---QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp H---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred H---hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7 777777777777777777777777777777665443
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.33 E-value=2.1e-11 Score=110.85 Aligned_cols=111 Identities=8% Similarity=-0.061 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
...++.+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++.+|+.+|.++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56677777777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPLNPEIWLATIR 604 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 604 (701)
. .|++++|+..|++++..+|+++..|...+.
T Consensus 91 ~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 91 D---MADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp H---TTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred H---ccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8 888888888888888888877765555443
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.33 E-value=3.1e-11 Score=104.42 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Q 040951 425 VLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERE 503 (701)
Q Consensus 425 ~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~ 503 (701)
..+..+|..+...|++++|+..|++++...|++..++..++.++...|++++|+..+++++...|. +.+++.+|.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444433333 3334444444444
Q ss_pred hCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 040951 504 LGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLG 539 (701)
Q Consensus 504 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 539 (701)
.|++++|+..|++++...|+++.++..++.++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444333
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.32 E-value=1e-10 Score=117.68 Aligned_cols=161 Identities=7% Similarity=-0.120 Sum_probs=99.6
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC------HHHHH
Q 040951 463 AAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF------FNLWL 529 (701)
Q Consensus 463 ~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 529 (701)
..+..+...|++++|...+.+++...+. ...++.++.++...|++++|+..|++++...+.. ..++.
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3344444445555555555544444332 1223344555556666777777777766654332 34666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHh---hhCCCCH----HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC------CH
Q 040951 530 MLGQLEERLGHLKEAKEAYQSGC---NQCPNCI----PLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL------NP 596 (701)
Q Consensus 530 ~la~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~------~~ 596 (701)
.+|.+|...|++++|...|++++ +..|++. .++..+|.++.. .|++++|+..+++++...++ .+
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~---~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL---DSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH---HhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77777777777777777777776 3445432 466777777777 77777777777777765432 14
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 040951 597 EIWLATIRAESKHGNKKEA-DSFIAKALQKC 626 (701)
Q Consensus 597 ~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~ 626 (701)
.++..+|.++...|++++| ...|++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 6777778888888888777 66677777653
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.32 E-value=2.1e-11 Score=110.91 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 522 PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLA 601 (701)
Q Consensus 522 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 601 (701)
+.+...+..+|.++...|++++|+..|++++..+|.++.+|..+|.++.. .|++++|+..|++++..+|+++.+|..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA---SGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44578899999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 040951 602 TIRAESKHGNKKEADSFIAKALQKCPNSGILWAE 635 (701)
Q Consensus 602 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~ 635 (701)
+|.++...|++++|+..|+++++.+|+++..|..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 9999999999999999999999999998765543
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=1.6e-11 Score=105.27 Aligned_cols=97 Identities=22% Similarity=0.230 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040951 529 LMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESK 608 (701)
Q Consensus 529 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 608 (701)
+.+|..+...|++++|+..|+++++.+|+++.+|..+|.++.. .|++++|+..|++++..+|+++.+|..+|.++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE---NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444 4444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 040951 609 HGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 609 ~g~~~~A~~~~~~al~~~p~ 628 (701)
.|++++|+..|+++++.+|+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 44444444444444444443
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=1.8e-11 Score=104.86 Aligned_cols=103 Identities=20% Similarity=0.083 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
..++..|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHhCCCCHH
Q 040951 572 RNGLNGLSKARAVLSVARLKNPLNPE 597 (701)
Q Consensus 572 ~~~~g~~~~A~~~~~~a~~~~p~~~~ 597 (701)
.|++++|+..|++++..+|+++.
T Consensus 98 ---~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 ---EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp ---HHHHHHHHHHHHHHHC-------
T ss_pred ---cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998753
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.29 E-value=1.5e-10 Score=99.00 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 040951 426 LWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVEREL 504 (701)
Q Consensus 426 ~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~ 504 (701)
.+..++.++...|++++|+..|++++..+|++..++..++.++...|++++|+..|++++...|. +.++..++.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444444444444444444433333 33333444444444
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 505 GNNAEERGFIEEGLKRFPSFFNLWLMLGQLE 535 (701)
Q Consensus 505 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 535 (701)
|++++|+..|++++...|+++.++..++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.29 E-value=2.3e-11 Score=114.64 Aligned_cols=167 Identities=15% Similarity=0.077 Sum_probs=96.0
Q ss_pred HhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh------CCCCHHHHHHHHHHHhhhccCC
Q 040951 503 ELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQ------CPNCIPLWYSLANLEEKRNGLN 576 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~g 576 (701)
..|++++|...++......+....++..+|.++...|++++|+..|++++.. .|....++..+|.++.. .|
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~---~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM---AG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TT
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH---cC
Confidence 3455555555333332222234556666666666666666666666666652 22234556666666666 77
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHH
Q 040951 577 GLSKARAVLSVARLK---NPLN----PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKG 649 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~---~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~ 649 (701)
++++|+..+++++.. .+++ ..++..+|.++...|++++|...+++++...+..+..+.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------- 145 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA--------------- 145 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH---------------
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH---------------
Confidence 777777777776665 3322 245666777777777777777777777665332110000
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 040951 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGDF 696 (701)
Q Consensus 650 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d~ 696 (701)
...++..+|.++...|++++|..+|++++++....++.
T Consensus 146 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 183 (203)
T 3gw4_A 146 ---------IACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183 (203)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 13345667777777777777777777777765554443
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.29 E-value=4.6e-11 Score=104.67 Aligned_cols=112 Identities=11% Similarity=-0.039 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE 570 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 570 (701)
+..++.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45555555555566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhccCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHH
Q 040951 571 KRNGLNGLSKARAVLSVARLKNPL-----NPEIWLATIRA 605 (701)
Q Consensus 571 ~~~~~g~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~ 605 (701)
. .|++++|+..|++++...|+ +..++..+..+
T Consensus 89 ~---~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 89 E---MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp H---TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred H---HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 6 66666666666666655554 34444444443
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.28 E-value=7.6e-11 Score=101.95 Aligned_cols=99 Identities=9% Similarity=-0.064 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC-------HHHHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-------IPLWYS 564 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~ 564 (701)
..+..+|..+...|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++..|++ ..++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455666666677777777777777777777777777777777777777777777777776665554 235566
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 565 LANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 565 la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
+|.++.. .|++++|+..|++++...|
T Consensus 89 lg~~~~~---~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQK---QNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH---cCCHHHHHHHHHHHHhhCc
Confidence 6666666 6666666666666666655
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.27 E-value=7.2e-11 Score=103.43 Aligned_cols=107 Identities=12% Similarity=-0.071 Sum_probs=101.8
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 519 KRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 519 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
...|.++..+..+|.++...|++++|+..|++++..+|.++.+|..+|.++.. .|++++|+..|++++..+|+++.+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~ 79 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK---MQQPEQALADCRRALELDGQSVKA 79 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCchhHHH
Confidence 34677899999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 599 WLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 599 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
|..+|.++...|++++|+..|.+++...|+
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999886
No 160
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.27 E-value=8.8e-11 Score=118.08 Aligned_cols=167 Identities=10% Similarity=-0.056 Sum_probs=127.4
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHH
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSFFN------LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSL 565 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l 565 (701)
+..+...|++++|...+++++...+..+. .+..+|.++...|++++|+..|++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566777788888888877776665544 23346777777788888888888888754332 3368888
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHh
Q 040951 566 ANLEEKRNGLNGLSKARAVLSVARLKN---PL----NPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIK 638 (701)
Q Consensus 566 a~~~~~~~~~g~~~~A~~~~~~a~~~~---p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~ 638 (701)
|.++.. .|++++|..+|++++... |. ...++..+|.++...|++++|+..++++++..+...
T Consensus 162 g~~y~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-------- 230 (293)
T 3u3w_A 162 ANIYAE---NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-------- 230 (293)
T ss_dssp HHHHHH---TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHH---cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--------
Confidence 889988 999999999999988522 22 235889999999999999999999999998865421
Q ss_pred cCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 040951 639 MVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDR-KVDKARNWFNKAVSLDP 691 (701)
Q Consensus 639 ~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 691 (701)
..+.-+.++..+|.++...| .+++|..+|++|+.+..
T Consensus 231 ----------------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 231 ----------------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp ----------------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 01112778999999999999 57999999999998754
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=1.9e-10 Score=97.34 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEER 537 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 537 (701)
..+..++..+...|++++|...|++++...|. +.++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555566666666666666666666665555 55666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Q 040951 538 LGHLKEAKEAYQSGCNQCPNCIPLWYSLANLE 569 (701)
Q Consensus 538 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 569 (701)
.|++++|...|++++...|.++.++..++.+.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 66666666666666666666666666665543
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.25 E-value=6.3e-12 Score=134.80 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=106.0
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHH
Q 040951 436 LAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFI 514 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~ 514 (701)
..+++++|+..++.++...|.....+..++..+...|++++|+..|++++...|. .... .+.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~----- 308 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EKE----- 308 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HHH-----
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hHH-----
Confidence 3556677777777777776766667777777777777777777777777766555 1100 000
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC
Q 040951 515 EEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL 594 (701)
Q Consensus 515 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 594 (701)
.....+....+|..+|.++..+|++++|+..|++++..+|+++.+++.+|.++.. .|++++|+..|+++++.+|+
T Consensus 309 --~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~---~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 309 --SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL---MNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTC--
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCC
Confidence 0011111256777777777777777777777777777777777777777777777 77777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 040951 595 NPEIWLATIRAESKHGNKKEAD 616 (701)
Q Consensus 595 ~~~~~~~l~~~~~~~g~~~~A~ 616 (701)
+..++..++.++...|+++++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776655
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.25 E-value=1.6e-10 Score=100.06 Aligned_cols=110 Identities=14% Similarity=0.076 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---HHHHHHHHH
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRFPSFF---NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---IPLWYSLAN 567 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~ 567 (701)
++..|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 44556666666666666666666666666655 566666666666666666666666666666666 566666666
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 568 LEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606 (701)
Q Consensus 568 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 606 (701)
++.. .|++++|+..|++++...|+++.+......+.
T Consensus 85 ~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 85 SQYG---EGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHH---cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 6666 66666666666666666666665554444433
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-10 Score=102.11 Aligned_cols=111 Identities=14% Similarity=-0.014 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANL 568 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 568 (701)
..++..|..+...|++++|+..|++++...|++ ..++..+|.++...|++++|+..|++++...|.++.++..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 334444444444444444444444444444443 34444444444444444444444444444444444444444444
Q ss_pred HhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 569 EEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA 605 (701)
Q Consensus 569 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 605 (701)
+.. .|++++|+..|++++..+|+++.++..++.+
T Consensus 109 ~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 109 LEK---LGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHH---HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHH---cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 444 4444444444444444444444444444333
No 165
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.24 E-value=2.3e-10 Score=114.95 Aligned_cols=157 Identities=11% Similarity=-0.049 Sum_probs=84.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHH------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHH
Q 040951 397 AQLEKTHGSRESLIALLRKAVTYFPQAEVL------WLMGAKEKWLAGDVPAARDILQEAYATIPNS------EEIWLAA 464 (701)
Q Consensus 397 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~------~~~~~~l 464 (701)
+..+...|++++|...+++++...+..+.. +..++.++...|++++|+..|++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445556667777777777766655544331 1234555555566666666666666643221 1245556
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcC----CC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC------HHHHHH
Q 040951 465 FKLEFENRELERARMLLAKARDMG----GT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF------FNLWLM 530 (701)
Q Consensus 465 a~~~~~~~~~~~A~~~~~~a~~~~----p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 530 (701)
|.+|...|++++|...|++++... .. ..+++.+|.++...|++++|+.++++++...+.. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 666666666666666666665311 11 3355555555555555555555555555543221 445555
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHhh
Q 040951 531 LGQLEERLG-HLKEAKEAYQSGCN 553 (701)
Q Consensus 531 la~~~~~~~-~~~~A~~~~~~al~ 553 (701)
+|.++...| ++++|...|++++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 555555555 24555555555543
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.24 E-value=5.1e-11 Score=99.93 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC--CHHH
Q 040951 521 FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL--NPEI 598 (701)
Q Consensus 521 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~ 598 (701)
+|++...+..+|.++...|++++|+..|+++++..|.+..++..+|.++.. .|++++|+..|++++...|. ++.+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN---LERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCcccchHHH
Confidence 567777788888888888888888888888888888888888888888888 88888888888888888888 8888
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC
Q 040951 599 WLATIRAESKH-GNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 599 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~ 629 (701)
|..++.++... |++++|...+.+++...|.+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888888888 88888888888888887764
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=3.5e-10 Score=100.27 Aligned_cols=118 Identities=15% Similarity=0.049 Sum_probs=88.9
Q ss_pred CCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHH
Q 040951 454 IPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWL 529 (701)
Q Consensus 454 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 529 (701)
.|.+...+..++..+...|++++|+..|++++...|+ ..+|..++.++...|++++|+..+++++...|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455666666677777777777777777777766665 566777777777888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 530 MLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 530 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
.+|.++...|++++|+..|++++..+|++..++..++.+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888888888888888888888888888888777777776544
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.23 E-value=1.3e-10 Score=100.50 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~ 456 (701)
++..+|..+...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|+++++.+|+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 44455555555555555555555555555555555555555555555555555555555555443
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.23 E-value=7.2e-11 Score=107.05 Aligned_cols=115 Identities=13% Similarity=0.017 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKR------------------FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGC 552 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 552 (701)
...+...|..+...|++++|+..|.+++.. .|.+..++..+|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345555666666666666666666666666 55566778888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHh
Q 040951 553 NQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP-EIWLATIRAESK 608 (701)
Q Consensus 553 ~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~ 608 (701)
..+|.++.+|+.+|.++.. .|++++|+..|++++..+|+++ .+...+..+...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIA---AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHH---HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 8888888888888888888 8888888888888888888777 555555555443
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=1e-11 Score=133.14 Aligned_cols=144 Identities=13% Similarity=-0.020 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC---------------HHHHHHHHHHH
Q 040951 505 GNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC---------------IPLWYSLANLE 569 (701)
Q Consensus 505 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~ 569 (701)
+++++|+..|+.++...|.....+..+|.++...|++++|+..|++++...|.+ ..+|..+|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555566666666666666666666666666666655 68899999999
Q ss_pred hhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHH
Q 040951 570 EKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKG 649 (701)
Q Consensus 570 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~ 649 (701)
.. .|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++.+|++
T Consensus 328 ~~---~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-------------------- 384 (457)
T 1kt0_A 328 LK---LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-------------------- 384 (457)
T ss_dssp HH---TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------------
T ss_pred HH---hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------------------
Confidence 99 9999999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 040951 650 KDALVKSDRDPHVFAAVAKLFWHDRKVDKARN 681 (701)
Q Consensus 650 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 681 (701)
+.++..++.++...|++++|..
T Consensus 385 ----------~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 385 ----------KAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888877777776653
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.20 E-value=1.3e-10 Score=97.29 Aligned_cols=109 Identities=15% Similarity=0.052 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 040951 555 CPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWA 634 (701)
Q Consensus 555 ~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~ 634 (701)
+|++..++..+|.++.. .|++++|+..|++++...|.++.+|..+|.++...|++++|...++++++..|..
T Consensus 2 ~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----- 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD---AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE----- 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHS---SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-----
T ss_pred CCCcHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-----
Confidence 68888899999999999 9999999999999999999999999999999999999999999999999988850
Q ss_pred HHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCc
Q 040951 635 ELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHD-RKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 635 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~ 694 (701)
.++.++..+|.++... |++++|+.+|++++...|+++
T Consensus 74 -----------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 -----------------------YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp -----------------------TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred -----------------------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 0378889999999999 999999999999999999764
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.18 E-value=8.1e-10 Score=95.46 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-H---HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDMGGT-E---RVWMKSAIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQ 533 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 533 (701)
++.++..+...|++++|+..|++++...|+ + .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 456667777777777777777777776666 3 677777888788888888888888888888877 777888888
Q ss_pred HHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 534 LEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 534 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
++...|++++|+..|++++...|+++.+......+...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 88888888888888888888888877766666555443
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.18 E-value=3.4e-11 Score=123.55 Aligned_cols=154 Identities=12% Similarity=0.040 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEE 536 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 536 (701)
....+..++..+...|++++|+..|++++...|....+ ...|++.++...+. ..+++.+|.++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-------TCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-------hhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 34556667777777777777777777777666652211 11122222222111 137778888888
Q ss_pred HcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhcCCHHHH
Q 040951 537 RLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRA-ESKHGNKKEA 615 (701)
Q Consensus 537 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~g~~~~A 615 (701)
..|++++|+..|++++..+|++..+|+.+|.++.. .|++++|+..|++++..+|+++.++..++.+ ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~---~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE---LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888 8888888888888888888888887777777 3445566777
Q ss_pred HHHHHHHHHhCCCC
Q 040951 616 DSFIAKALQKCPNS 629 (701)
Q Consensus 616 ~~~~~~al~~~p~~ 629 (701)
...|.+++...|.+
T Consensus 319 ~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 319 KEMYKGIFKGKDEG 332 (338)
T ss_dssp --------------
T ss_pred HHHHHHhhCCCCCC
Confidence 77888888777765
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.18 E-value=2.5e-10 Score=98.57 Aligned_cols=114 Identities=8% Similarity=-0.034 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC-------HHHHH
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC-------IPLWY 563 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~ 563 (701)
+..++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|...|++++...|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45667777777777888888888888887777777777788888878888888888888887777665 67777
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040951 564 SLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESK 608 (701)
Q Consensus 564 ~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 608 (701)
.+|.++.. .|++++|+..|++++...| ++..+..++.+...
T Consensus 84 ~la~~~~~---~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFK---EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 78888877 7888888888888887777 56666666665543
No 175
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.18 E-value=7.5e-11 Score=103.50 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=67.9
Q ss_pred hCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHH
Q 040951 504 LGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARA 583 (701)
Q Consensus 504 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~ 583 (701)
.+.+++|+..++++++.+|+++..|+.+|.++...++++.+.... +.+++|+.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al---------------------------~~~~eAi~ 67 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK---------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH---------------------------HHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH---------------------------hHHHHHHH
Confidence 344555555555555555555555555555555555433111100 01335555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHH
Q 040951 584 VLSVARLKNPLNPEIWLATIRAESKH-----------GNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDA 652 (701)
Q Consensus 584 ~~~~a~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~a 652 (701)
.|+++++.+|++.++|+.+|.+|... |++++|+.+|++|++.+|+++.. .++
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y-----------------~~a 130 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY-----------------LKS 130 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-----------------HHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH-----------------HHH
Confidence 55555555555555555555555544 47888888888888888876433 355
Q ss_pred HHhcCCChHHHHHHH
Q 040951 653 LVKSDRDPHVFAAVA 667 (701)
Q Consensus 653 l~~~p~~~~~~~~lg 667 (701)
++..+..|+.++.+.
T Consensus 131 l~~~~ka~el~~~~~ 145 (158)
T 1zu2_A 131 LEMTAKAPQLHAEAY 145 (158)
T ss_dssp HHHHHTHHHHHHHHH
T ss_pred HHHHHhCHhccCccc
Confidence 666666676666554
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.17 E-value=1.8e-10 Score=101.42 Aligned_cols=100 Identities=17% Similarity=0.053 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhCCC-------C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHh----
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQCPN-------C-----IPLWYSLANLEEKRNGLNGLSKARAVLSVARLK---- 591 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~-----~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~---- 591 (701)
+...|..+...|++++|+..|+++++.+|+ + ..+|..+|.++.. .|++++|+..|++++..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~---Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG---LRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhhhcc
Confidence 344444444444444444444444444444 2 2377777777777 77777777777777777
Q ss_pred ---CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 592 ---NPLNPEIW----LATIRAESKHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 592 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
+|+++.+| +..|.++...|++++|+..|+++++..|++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 78777777 7778888888888888888888887777653
No 177
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.17 E-value=2.6e-10 Score=107.28 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=97.0
Q ss_pred HcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 040951 470 ENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKR------FPSFFNLWLMLGQLEERLGHLK 542 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~ 542 (701)
..|++++|...++.+....+. ..++..+|.++...|++++|+..+++++.. .|....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345666666644333332222 556666666666666666666666666662 2333456667777777777777
Q ss_pred HHHHHHHHHhhh---CCCC----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHhc
Q 040951 543 EAKEAYQSGCNQ---CPNC----IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP--LNP----EIWLATIRAESKH 609 (701)
Q Consensus 543 ~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p--~~~----~~~~~l~~~~~~~ 609 (701)
+|+..+++++.. .+++ ..++..+|.++.. .|++++|+..+++++...+ .++ .++..++.++...
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALH---FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777665 3322 3456677777777 7777777777777775432 222 3456778888888
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 040951 610 GNKKEADSFIAKALQKCP 627 (701)
Q Consensus 610 g~~~~A~~~~~~al~~~p 627 (701)
|++++|...++++++...
T Consensus 161 g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 888888888888877654
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.17 E-value=2e-10 Score=101.06 Aligned_cols=109 Identities=13% Similarity=-0.021 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhhh----
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS-------FFN-----LWLMLGQLEERLGHLKEAKEAYQSGCNQ---- 554 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~---- 554 (701)
...+...|..+...|++++|+..|++++..+|+ +.. +|..+|.++..+|++++|+..|.+++..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345667777778888888888888888888887 433 8889999999999999999999999998
Q ss_pred ---CCCCHHHH----HHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 555 ---CPNCIPLW----YSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLAT 602 (701)
Q Consensus 555 ---~p~~~~~~----~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 602 (701)
+|++..+| +..|.++.. .|++++|+..|+++++..|++..+...+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~---lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDG---LGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHH---CCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99998888 999999999 9999999999999999988776444333
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=8.7e-12 Score=134.23 Aligned_cols=138 Identities=7% Similarity=-0.066 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 606 (701)
.+..+|.++...|++++|+..|+++++.+|++..+|..+|.++.. .|++++|+..|+++++.+|+++.+|..+|.++
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR---TECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445566667778888888888888888888888888888888888 88888888888888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 040951 607 SKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKL--FWHDRKVDKARNWFN 684 (701)
Q Consensus 607 ~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~ 684 (701)
...|++++|...|+++++..|++ +.++..++.+ +...|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~------------------------------~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHD------------------------------KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTC------------------------------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC------------------------------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888888887763 5566666666 777788888888888
Q ss_pred -----------HHHHhCCCCcccc
Q 040951 685 -----------KAVSLDPDTGDFW 697 (701)
Q Consensus 685 -----------~al~~~p~~~d~w 697 (701)
+++..+|++...+
T Consensus 135 ~~~~~~~~~~~~al~~~~~~~~~~ 158 (477)
T 1wao_1 135 HKRSVVDSLDIESMTIEDEYSGPK 158 (477)
T ss_dssp -CCSTTTCCTTSSCCCCTTCCSCC
T ss_pred ccchhHhhhhhhhccccccccccc
Confidence 7777777766554
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=5.6e-10 Score=101.08 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=70.3
Q ss_pred CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCH-HHHHHH
Q 040951 488 GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCI-PLWYSL 565 (701)
Q Consensus 488 ~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l 565 (701)
.|. ..+|..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 344 678888888888999999999999999999999999999999999999999999999999999999887 556666
Q ss_pred HHHHhh
Q 040951 566 ANLEEK 571 (701)
Q Consensus 566 a~~~~~ 571 (701)
..+...
T Consensus 139 ~~~~~~ 144 (162)
T 3rkv_A 139 KIVTER 144 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.14 E-value=5.4e-10 Score=96.48 Aligned_cols=110 Identities=13% Similarity=0.022 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHH
Q 040951 390 KSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNS-------EEIWL 462 (701)
Q Consensus 390 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~-------~~~~~ 462 (701)
...|..+|..+...|++++|...|++++..+|.+..++..+|.++...|++++|+..|++++...|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34455555555556666666666666665555555555555555555566666666665555555443 44444
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 040951 463 AAFKLEFENRELERARMLLAKARDMGGTERVWMKSAI 499 (701)
Q Consensus 463 ~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~ 499 (701)
.++.++...|++++|...|++++...|++.++..++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444444445555555444444444444333333333
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.13 E-value=5.5e-11 Score=122.02 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=103.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHH
Q 040951 414 RKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERV 493 (701)
Q Consensus 414 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 493 (701)
...+...+.....+..+|..+...|++++|+..|++++...|++.. +...+++.++...+. ..+
T Consensus 169 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~--------~~~ 232 (338)
T 2if4_A 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK--------NPC 232 (338)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH--------THH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH--------HHH
Confidence 3334444556778999999999999999999999999999987541 223344455443332 247
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHh-hh
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEE-KR 572 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 572 (701)
|+.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++..|++..++..++.+.. .
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~- 311 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE- 311 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998844 4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCHH
Q 040951 573 NGLNGLSKARAVLSVARLKNPLNPE 597 (701)
Q Consensus 573 ~~~g~~~~A~~~~~~a~~~~p~~~~ 597 (701)
.+..++++..|.+++...|+++.
T Consensus 312 --~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 312 --KALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------------------------
T ss_pred --HHHHHHHHHHHHHhhCCCCCCCC
Confidence 67888999999999999997753
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.11 E-value=1.1e-10 Score=99.33 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=61.2
Q ss_pred hCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHH
Q 040951 504 LGNNAEERGFIEEGLKR---FPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSK 580 (701)
Q Consensus 504 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~ 580 (701)
.|++++|+..|+++++. +|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN---LGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH---cCCHHH
Confidence 46666667777777766 366666677777777777777777777777777777777777777777766 677777
Q ss_pred HHHHHHHHHHhCCCCHHHH
Q 040951 581 ARAVLSVARLKNPLNPEIW 599 (701)
Q Consensus 581 A~~~~~~a~~~~p~~~~~~ 599 (701)
|+..|++++...|+++.+.
T Consensus 80 A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCcHHHH
Confidence 7777777777666666543
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=8.6e-10 Score=117.45 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCC------CCHHH
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDMGGT-------ERVWMKSAIVERELGNNAEERGFIEEGLKRFP------SFFNL 527 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~ 527 (701)
+..++.+|...|++++|.+.+.+++...+. ..+...++.++...|+++.|+.++++++...+ ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445566666666666666666665554332 12233344444455666666666666655432 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhC------CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC---CCCH--
Q 040951 528 WLMLGQLEERLGHLKEAKEAYQSGCNQC------PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN---PLNP-- 596 (701)
Q Consensus 528 ~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~-- 596 (701)
+..+|.++...|++++|...+++++... |....++...+.++.. .|++.+|+..+++++... ++.+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK---LRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 6667777777777777777776665532 1224566677777777 777777777777766543 2221
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 597 --EIWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 597 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
.++...|.++...|++.+|...|.+++..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34556666677777777777777777654
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.11 E-value=2.2e-11 Score=131.12 Aligned_cols=124 Identities=11% Similarity=-0.080 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhc
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRN 573 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 573 (701)
+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-- 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-- 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 334455566778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 040951 574 GLNGLSKARAVLSVARLKNPLNPEIWLATIRA--ESKHGNKKEADSFIA 620 (701)
Q Consensus 574 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 620 (701)
.|++++|+..|+++++.+|+++.++..++.+ +...|++++|+..++
T Consensus 87 -~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 -LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888887777777776 677788888888887
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.10 E-value=2.1e-10 Score=100.67 Aligned_cols=101 Identities=17% Similarity=0.035 Sum_probs=74.8
Q ss_pred HcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 470 ENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNA----------EERGFIEEGLKRFPSFFNLWLMLGQLEERL 538 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 538 (701)
+.+.+++|++.+++++...|. +.+|+.+|.++...++++ +|+..|+++++++|++..+|+.+|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 557899999999999999999 999999999999888765 666666666666666666666666666655
Q ss_pred CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCH
Q 040951 539 GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNP 596 (701)
Q Consensus 539 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 596 (701)
|.+ .|+.+. . .|++++|+..|++|++.+|++.
T Consensus 94 g~l-------------~P~~~~----------a---~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFL-------------TPDETE----------A---KHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHH-------------CCCHHH----------H---HHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccc-------------Ccchhh----------h---hccHHHHHHHHHHHHHhCCCCH
Confidence 432 333211 1 2468888888888888888764
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.10 E-value=6.5e-10 Score=99.93 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC----
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN---- 595 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~---- 595 (701)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++.. .|++++|...+++++...+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF---LGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 355566666666666666666666666544321 2356677777777 777777777777777655432
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhc
Q 040951 596 --PEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHD 673 (701)
Q Consensus 596 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~ 673 (701)
..++..+|.++...|++++|...+++++...+..+.. +..+.++..+|.++...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR------------------------IGEGRACWSLGNAYTAL 142 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch------------------------HhHHHHHHHHHHHHHHc
Confidence 3567788888888888888888888888764421100 01256778889999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCc
Q 040951 674 RKVDKARNWFNKAVSLDPDTG 694 (701)
Q Consensus 674 g~~~~A~~~~~~al~~~p~~~ 694 (701)
|++++|..+|++++++....+
T Consensus 143 g~~~~A~~~~~~a~~~~~~~~ 163 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISREVG 163 (164)
T ss_dssp TCHHHHHHHHHHHHHHHTTC-
T ss_pred cCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988876554
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.09 E-value=8.2e-10 Score=114.52 Aligned_cols=139 Identities=17% Similarity=0.103 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERL 538 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 538 (701)
..+..++..+...|++++|+..|++++...+... +....+......|.+..++..+|.++...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666666666666666654322100 00112222336677788888899999899
Q ss_pred CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040951 539 GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADS 617 (701)
Q Consensus 539 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 617 (701)
|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|++..++..++.++...++.+++..
T Consensus 287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG---LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999889888889999999888 8999999999999999999888888888888888877776654
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.08 E-value=2e-10 Score=97.70 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 040951 368 KRGSIETARAIFSHACTV---FLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAAR 444 (701)
Q Consensus 368 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~ 444 (701)
..|++++|+..|+++++. +|++..+|..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357888899999999988 58888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 040951 445 DILQEAYATIPNSEEIWL 462 (701)
Q Consensus 445 ~~l~~a~~~~p~~~~~~~ 462 (701)
..|++++...|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999888877654
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.9e-09 Score=114.76 Aligned_cols=162 Identities=13% Similarity=0.083 Sum_probs=89.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCcHHHHHHHHHHHHhcCC------C-HHH
Q 040951 427 WLMGAKEKWLAGDVPAARDILQEAYATIPNSEE------IWLAAFKLEFENRELERARMLLAKARDMGG------T-ERV 493 (701)
Q Consensus 427 ~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~a~~~~p------~-~~~ 493 (701)
+..+|.++...|++++|.+.+.+++...+.... +...++.++...|+++.|..++++++...+ . ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 444555555555555555555555544332111 222344444455666666666666554221 1 455
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC---CCC----HH
Q 040951 494 WMKSAIVERELGNNAEERGFIEEGLKRF------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC---PNC----IP 560 (701)
Q Consensus 494 ~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~----~~ 560 (701)
+..+|.++...|++.+|..++.+++... |....++...+.+|...|++++|...|++++... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6666666666666666666666665542 2224466666666666666666666666665532 222 23
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 561 LWYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 561 ~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
++..++.++.. .|++.+|...|..++..
T Consensus 218 ~~~~~g~~~~~---~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 218 LDLMSGILHCE---DKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHTTS---SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHhHHHHHHHHHHHHHH
Confidence 35555666666 66777776666666543
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.01 E-value=2.6e-09 Score=95.88 Aligned_cols=134 Identities=21% Similarity=0.093 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------H
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSF------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------I 559 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~ 559 (701)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|...+++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 345555555566666666666666665554321 1356666666666777777777776666654332 4
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040951 560 PLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPL------NPEIWLATIRAESKHGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 560 ~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 628 (701)
.++..+|.++.. .|++++|...+++++...+. ...++..++.++...|++++|...++++++....
T Consensus 90 ~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTL---LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 456677777777 77777777777777765321 1356777788888888888888888888776543
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.01 E-value=3e-09 Score=110.24 Aligned_cols=140 Identities=10% Similarity=-0.025 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVE 501 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~ 501 (701)
....+..+|..+...|++++|+..|++++...|... .....+......|. ..+|..+|.++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999999999999998654321 00112223333444 67788888888
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHH
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKA 581 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A 581 (701)
...|++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++..|++..++..++.++.. .++..++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~---~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK---IKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888877 6666655
Q ss_pred HH
Q 040951 582 RA 583 (701)
Q Consensus 582 ~~ 583 (701)
..
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.87 E-value=1.1e-08 Score=86.47 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVA 588 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a 588 (701)
.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.+..+|..+|.++.. .|++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG---QGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Confidence 466777778888888788888888888888888888888888888888887788888888887 78888888888888
Q ss_pred HHhCCC
Q 040951 589 RLKNPL 594 (701)
Q Consensus 589 ~~~~p~ 594 (701)
+...|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 777663
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=3.7e-08 Score=78.74 Aligned_cols=83 Identities=28% Similarity=0.283 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 524 FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATI 603 (701)
Q Consensus 524 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 603 (701)
+...+..+|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|+..|++++..+|+++.++..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK---QGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 345566666666666666666666666666666666666666666666 66666666666666666666666666666
Q ss_pred HHHHhc
Q 040951 604 RAESKH 609 (701)
Q Consensus 604 ~~~~~~ 609 (701)
.++...
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 655543
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.82 E-value=5e-08 Score=82.24 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 040951 374 TARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYAT 453 (701)
Q Consensus 374 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~ 453 (701)
.|+..|++++..+|++..+|..+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC
Q 040951 454 IPN 456 (701)
Q Consensus 454 ~p~ 456 (701)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
No 196
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.79 E-value=7.6e-08 Score=81.33 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=92.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHhhhCCCC--------HHHHHHHHHHHhhhccCCCHHHHHHHH
Q 040951 520 RFPSFFNLWLMLGQLEERLGHL------KEAKEAYQSGCNQCPNC--------IPLWYSLANLEEKRNGLNGLSKARAVL 585 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~g~~~~A~~~~ 585 (701)
..|++++.|..+....+..|++ ++.+++|++++...|.. +.+|+.+|.+ .. .++.++|+.+|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e---i~D~d~aR~vy 83 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA---IQEPDDARDYF 83 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH---HHCGGGCHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH---hcCHHHHHHHH
Confidence 4688888888888888888888 88888888888876653 5678888876 45 68899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 040951 586 SVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELI 637 (701)
Q Consensus 586 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~ 637 (701)
+.++..+.+.+.+|..++.++.+.|+...|+.++.+++..+|....+....+
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 9998888778889999999999999999999999999999988765555443
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=4.2e-09 Score=88.03 Aligned_cols=79 Identities=14% Similarity=0.008 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC------HHHHHHHH
Q 040951 493 VWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC------IPLWYSLA 566 (701)
Q Consensus 493 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la 566 (701)
.|..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++..+|++ ..++..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444 44444444
Q ss_pred HHHhh
Q 040951 567 NLEEK 571 (701)
Q Consensus 567 ~~~~~ 571 (701)
.++..
T Consensus 86 ~~~~~ 90 (111)
T 2l6j_A 86 LAQGA 90 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=4.3e-09 Score=88.00 Aligned_cols=94 Identities=14% Similarity=-0.001 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC------HH
Q 040951 524 FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN------PE 597 (701)
Q Consensus 524 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~ 597 (701)
+...+..+|.++...|++++|+..|++++...|.++.+|..+|.++.. .|++++|+..|++++..+|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK---LGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 367889999999999999999999999999999999999999999999 999999999999999999998 88
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 040951 598 IWLATIRAESKHGNKKEADSFIA 620 (701)
Q Consensus 598 ~~~~l~~~~~~~g~~~~A~~~~~ 620 (701)
++..++.++...|+++.|+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 88889998888887776655444
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.75 E-value=4.5e-07 Score=86.97 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=86.6
Q ss_pred hCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHhhhCCC--CHHHHHHHHHHHhhhccC-----CCHHHH
Q 040951 520 RFPSFFNLWLMLGQLEER-----LG------HLKEAKEAYQSGCNQCPN--CIPLWYSLANLEEKRNGL-----NGLSKA 581 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~-----g~~~~A 581 (701)
..|+++..++..|.+... .| ....|+..++++++++|+ +..+|..+|.+|.. . |+.++|
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~---vPp~~gGd~ekA 223 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA---APESFGGGMEKA 223 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH---SCTTTTCCHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh---CCCccCCCHHHH
Confidence 357777776666665432 12 356788999999999999 56689999999887 6 899999
Q ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCC
Q 040951 582 RAVLSVARLKNPLN-PEIWLATIRAESKH-GNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 582 ~~~~~~a~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~ 628 (701)
+..|++++.++|+. ...++.+++++... |+++.+..+++++++..|.
T Consensus 224 ~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 224 HTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999964 89999999998884 9999999999999998775
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.74 E-value=1.1e-07 Score=75.82 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 388 TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKL 467 (701)
Q Consensus 388 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~ 467 (701)
.+..+|..++.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567777888888888888888888888888888888888888888888888888888888888888877777777777
Q ss_pred HHHc
Q 040951 468 EFEN 471 (701)
Q Consensus 468 ~~~~ 471 (701)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.71 E-value=2.9e-08 Score=81.42 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=53.1
Q ss_pred hCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 554 QCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
.+|+++.+|+.+|.++.. .|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++..|
T Consensus 2 ~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK---HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 357777777777777777 77777777777777777777777777777777777777777777777777655
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.66 E-value=1.3e-07 Score=77.50 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=56.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 520 RFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 520 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++.. .|++++|+..|++++...|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER---LDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhhh
Confidence 3577888888888888888888888888888888888888888888888888 8888888888888887765
No 203
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.66 E-value=4.8e-07 Score=76.50 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL 561 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 561 (701)
.+|..++.+ ...+|.++|+++|+.++..+.....+|..+|+...++|+...|++++.+++..+|....+
T Consensus 62 ~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 62 RIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 344445544 233555555555555555555555555555555555555555555555555555554433
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.62 E-value=5.3e-08 Score=79.49 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 040951 530 MLGQLEERLGHLKEAKEAYQSGCNQCPNCIP-LWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESK 608 (701)
Q Consensus 530 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 608 (701)
..|..+...|++++|+..|+++++.+|.++. ++..+|.++.. .|++++|+..|++++..+|+++.++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK---LGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 3445555555555555555555555555555 55555555555 555555555555555555555544422
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 040951 609 HGNKKEADSFIAKALQKCPN 628 (701)
Q Consensus 609 ~g~~~~A~~~~~~al~~~p~ 628 (701)
+.+.++...|.+++..+|+
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 3334444445444444443
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.61 E-value=5.5e-07 Score=86.39 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhhCCCC-HHHHHHHHHHHhhhccC-CC
Q 040951 507 NAEERGFIEEGLKRFPS--FFNLWLMLGQLEERL-----GHLKEAKEAYQSGCNQCPNC-IPLWYSLANLEEKRNGL-NG 577 (701)
Q Consensus 507 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~-g~ 577 (701)
...|...++++++++|+ +..+|..+|.+|... |+.++|+..|+++++++|+. ...++.+|+++.. . |+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~---~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI---PLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT---TTTC
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH---hcCC
Confidence 46789999999999999 677999999999984 99999999999999999975 9999999999876 5 99
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 040951 578 LSKARAVLSVARLKNPLN 595 (701)
Q Consensus 578 ~~~A~~~~~~a~~~~p~~ 595 (701)
.+.|...+++++...|..
T Consensus 256 ~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 256 RAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999999988763
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=1.4e-06 Score=76.08 Aligned_cols=111 Identities=17% Similarity=0.032 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHH
Q 040951 539 GHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESK----HGNKKE 614 (701)
Q Consensus 539 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~g~~~~ 614 (701)
+++++|+..|+++.+..+.... ++.++.. .+.+++|+.+|+++... .++..+..++.+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~---g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNS---QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCT---TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHc---CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 4577888888888776543333 7888877 77788888888888776 577888888888887 788888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 040951 615 ADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWH----DRKVDKARNWFNKAVSLD 690 (701)
Q Consensus 615 A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 690 (701)
|...|+++.+.. ++.+.+.+|.+|.. .+++++|..||++|.+..
T Consensus 80 A~~~~~~Aa~~g--------------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN--------------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT--------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC--------------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888887652 47788888888887 788888888888888764
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.56 E-value=1.4e-07 Score=76.95 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=79.2
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCC
Q 040951 563 YSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPE-IWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVP 641 (701)
Q Consensus 563 ~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~ 641 (701)
+..|..+.. .|++++|+..|++++..+|+++. +|..+|.++...|++++|+..|+++++.+|++
T Consensus 4 ~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------ 68 (99)
T 2kc7_A 4 LKTIKELIN---QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS------------ 68 (99)
T ss_dssp HHHHHHHHH---HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------------
T ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------------
Confidence 456778888 99999999999999999999999 99999999999999999999999999999985
Q ss_pred CccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcc
Q 040951 642 HHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDPDTGD 695 (701)
Q Consensus 642 ~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~d 695 (701)
+.++.. +.+.+|...|+++...+|+++.
T Consensus 69 ------------------~~~~~~--------~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 69 ------------------PALQAR--------KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp ------------------THHHHH--------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred ------------------HHHHHH--------HHHHHHHHHHHHHhccCccccc
Confidence 333321 6778888888888888887654
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.49 E-value=6.4e-06 Score=82.66 Aligned_cols=129 Identities=10% Similarity=-0.001 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---C-----CHHHHHHHHH--HHhhhCCCCHHHHHHHHHHHhhhccCC
Q 040951 507 NAEERGFIEEGLKRFPSFFNLWLMLGQLEERL---G-----HLKEAKEAYQ--SGCNQCPNCIPLWYSLANLEEKRNGLN 576 (701)
Q Consensus 507 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~-----~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~~~~g 576 (701)
..+|+.+|+++++.+|++..++..++.+|... + ........++ .++...|.++.++..++..+.. .|
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~---~g 291 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV---KG 291 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh---CC
Confidence 46778888888888888777777666665321 1 0111111222 2335678889999999888888 89
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHhc
Q 040951 577 GLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSG-ILWAELIKM 639 (701)
Q Consensus 577 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~l~~~~~~~ 639 (701)
++++|+..+++++..+|+ ...|..+|.++.-.|++++|...|++|+.++|..+ ..|+..+.+
T Consensus 292 d~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 292 KTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354 (372)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence 999999999999999974 67788899999999999999999999999999765 234443333
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.49 E-value=9.9e-06 Score=81.27 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=52.1
Q ss_pred CCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCH
Q 040951 488 GGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCI 559 (701)
Q Consensus 488 ~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 559 (701)
.|. +.++..++..+...|+++.|+..+++++.++|+ ...|..+|.++...|++++|.+.|.+++.++|...
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 344 667777776666677777777777777777764 56667777777777888888888888777777664
No 210
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.46 E-value=3.8e-05 Score=82.47 Aligned_cols=161 Identities=12% Similarity=-0.088 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhc--CCCHHHHH
Q 040951 428 LMGAKEKWLAGDVPAARDILQEAYATI-PNSEEIWLAAFKLEFEN---------RELERARMLLAKARDM--GGTERVWM 495 (701)
Q Consensus 428 ~~~a~~~~~~g~~~~A~~~l~~a~~~~-p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~--~p~~~~~~ 495 (701)
......+.+.|++++|+.+|+++.... +-+...|..+...+... +..++|.++|+++... .|+...|.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 333444555666666666666665543 11344455555444432 2356666777666653 35566666
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-CCCHHHHHHHHHHHhhhc
Q 040951 496 KSAIVERELGNNAEERGFIEEGLKRF-PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQC-PNCIPLWYSLANLEEKRN 573 (701)
Q Consensus 496 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 573 (701)
.+...+...|++++|..+|+++.... +-+...|..+...|.+.|+.++|.++|+...+.. ..+...|..+...+.+
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~-- 187 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD-- 187 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh--
Confidence 66666777777777777777666543 2236666667777777777777777777766532 2245566677777777
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 040951 574 GLNGLSKARAVLSVARLK 591 (701)
Q Consensus 574 ~~g~~~~A~~~~~~a~~~ 591 (701)
.|+.++|..+|+++...
T Consensus 188 -~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 188 -TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp -TTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHh
Confidence 77777777777776654
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.45 E-value=4.6e-06 Score=72.66 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hCChHHHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERE----LGNNAEERGFIE 515 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~----~g~~~~A~~~~~ 515 (701)
+++|+..|+++.+...... . ++.+|...+..++|+..|+++.+. .++..++.++.++.. .+++++|+.+|+
T Consensus 11 ~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 4444555555444432211 1 444444444444455555544443 224444444544444 445555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhh
Q 040951 516 EGLKRFPSFFNLWLMLGQLEER----LGHLKEAKEAYQSGCNQ 554 (701)
Q Consensus 516 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 554 (701)
++.+. .++..++.+|.+|.. .+++++|+..|+++.+.
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55443 334555555555554 45555555555555443
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.45 E-value=2e-05 Score=84.75 Aligned_cols=161 Identities=10% Similarity=0.007 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHhC-CCCHHH
Q 040951 392 IWLKAAQLEKTHGSRESLIALLRKAVTYF-PQAEVLWLMGAKEKWLAG---------DVPAARDILQEAYATI-PNSEEI 460 (701)
Q Consensus 392 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~g---------~~~~A~~~l~~a~~~~-p~~~~~ 460 (701)
.+......+.+.|+.++|..+|+++.... +-+...|..+...+...+ +.+.|.++|+++.... +-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666777888899999999998888762 335566666666665433 3678889998887765 225778
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 040951 461 WLAAFKLEFENRELERARMLLAKARDM--GGTERVWMKSAIVERELGNNAEERGFIEEGLKRF--PSFFNLWLMLGQLEE 536 (701)
Q Consensus 461 ~~~la~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 536 (701)
|..++..+...|++++|..+|+++... .|+...|..+...+...|+.++|..+|+++.+.. |+ ...|..+...+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHh
Confidence 888889999999999999999988764 4778888888888889999999999999888764 44 778888888999
Q ss_pred HcCCHHHHHHHHHHHhh
Q 040951 537 RLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 537 ~~~~~~~A~~~~~~al~ 553 (701)
+.|+.++|.++|++...
T Consensus 187 ~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 99999999999988765
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.36 E-value=3.7e-06 Score=89.62 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=83.6
Q ss_pred HHHhCChHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----CCCCH---HHHHH
Q 040951 501 ERELGNNAEERGFIEEGLKRF-----PSF---FNLWLMLGQLEERLGHLKEAKEAYQSGCNQ-----CPNCI---PLWYS 564 (701)
Q Consensus 501 ~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~ 564 (701)
+..+|++++|+.++++++... |++ ...+..+|.+|..+|++++|..++++++.. .|+++ ..+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345677777777777766542 333 345667777777777777777777777753 34443 34677
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 040951 565 LANLEEKRNGLNGLSKARAVLSVARLK-----NPLNP---EIWLATIRAESKHGNKKEADSFIAKALQKC 626 (701)
Q Consensus 565 la~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 626 (701)
+|.+|.. +|++++|..+|++|+.. .|++| ++...++.++...+.+++|..+|.++.+..
T Consensus 399 La~~~~~---~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWH---AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777 88888888888887754 35665 445667777777888888888888776544
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.36 E-value=2.5e-06 Score=68.19 Aligned_cols=69 Identities=13% Similarity=-0.085 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 556 PNCIPLWYSLANLEEKRNGLNG---LSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 556 p~~~~~~~~la~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 627 (701)
|+++.++..+|.++.. .++ ..+|...+++++..+|+++..+..+|..+...|++++|+.+++++++..|
T Consensus 3 p~~~~~~~~~a~al~~---~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYY---LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHH---TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4444444444444433 222 34444444444444444444444444444444444444444444444444
No 215
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=3.1e-06 Score=90.20 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=90.0
Q ss_pred HHhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHH
Q 040951 366 CKKRGSIETARAIFSHACTV-----FLTKK---SIWLKAAQLEKTHGSRESLIALLRKAVTY-----FPQA---EVLWLM 429 (701)
Q Consensus 366 ~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~ 429 (701)
+..+|++++|+.+|++++.. .|+++ ..+..++.++...|++++|..++++++.. .|++ ...+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 36789999999999999876 24444 46778888888999999999999888864 3444 345777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 040951 430 GAKEKWLAGDVPAARDILQEAYAT-----IPNSEE---IWLAAFKLEFENRELERARMLLAKARD 486 (701)
Q Consensus 430 ~a~~~~~~g~~~~A~~~l~~a~~~-----~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~ 486 (701)
+|.+|..+|++++|+..|++++.. .|+++. +...++.++.+.+.+++|..+|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888764 355544 334566667777777777777777654
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.23 E-value=6.7e-06 Score=65.69 Aligned_cols=71 Identities=13% Similarity=0.011 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 040951 386 FLTKKSIWLKAAQLEKTHGS---RESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456 (701)
Q Consensus 386 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~ 456 (701)
+|+++.++..+|.++...++ .++|...+++++..+|+++.+++.+|..+...|++++|+..+++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35555666666655544333 455666666666666666666666666666666666666666666655554
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=5.6e-05 Score=65.38 Aligned_cols=94 Identities=11% Similarity=0.000 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---cHHHHHHHHHHHHhcC-CC--HHHHHHHHHHHHHhCChHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENR---ELERARMLLAKARDMG-GT--ERVWMKSAIVERELGNNAEERGF 513 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~-p~--~~~~~~~a~~~~~~g~~~~A~~~ 513 (701)
...++..|.+.+..+|.+.++.+.++.++...+ ++++++.+|+.+++.. |. .+.++.+|..+.+.|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 345566666666666666777777777777766 5557777777777666 52 56666667777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHH
Q 040951 514 IEEGLKRFPSFFNLWLMLGQ 533 (701)
Q Consensus 514 ~~~al~~~p~~~~~~~~la~ 533 (701)
++.+++..|++..+....-.
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHH
Confidence 77777777776555444333
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=4.5e-05 Score=66.00 Aligned_cols=87 Identities=9% Similarity=-0.098 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhC-C-CCHHHHHHHHHHHhhhccCCCHHHHHH
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQLEERLG---HLKEAKEAYQSGCNQC-P-NCIPLWYSLANLEEKRNGLNGLSKARA 583 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~g~~~~A~~ 583 (701)
.+...|.+.+...|.+..+.+.+|.++.+.+ +.++++..++..++.. | +..+.++.+|..+.+ .|++++|+.
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k---l~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR---LKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH---TSCHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH---ccCHHHHHH
Confidence 3444444444444555555555555555544 3345555555555554 4 334555555555555 555555555
Q ss_pred HHHHHHHhCCCCHHH
Q 040951 584 VLSVARLKNPLNPEI 598 (701)
Q Consensus 584 ~~~~a~~~~p~~~~~ 598 (701)
+++++++..|++..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 555555555555433
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.85 E-value=0.00018 Score=58.82 Aligned_cols=75 Identities=11% Similarity=-0.046 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-------CCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQC-------PNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEI 598 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 598 (701)
.-.+.+|..+...|++..|...|+.+++.. +....++..+|.++.+ .|++++|+..+++++...|+++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~---~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ---QGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCCHHH
Confidence 334445555555555555555555554432 1224445555555555 555555555555555555555544
Q ss_pred HHHHH
Q 040951 599 WLATI 603 (701)
Q Consensus 599 ~~~l~ 603 (701)
...+.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 44433
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.84 E-value=0.00019 Score=58.68 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHH
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRF-------PSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYS 564 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 564 (701)
.-++.+|..+...|++..|+..|+.+++.. +..+.++..+|.++.+.|+++.|+..++++++..|++..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344555666666666666666666665542 2235566666666666666666666666666666666655544
Q ss_pred HH
Q 040951 565 LA 566 (701)
Q Consensus 565 la 566 (701)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.77 E-value=0.00017 Score=75.57 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHhcCC
Q 040951 575 LNGLSKARAVLSVARLK-----NPLNP---EIWLATIRAESKHGNKKEADSFIAKALQKC-----PNSGILWAELIKMVP 641 (701)
Q Consensus 575 ~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~l~~~~~~~~~ 641 (701)
.|++++|..++++++.. .|+++ ..+..++.+|...|++++|..++++++... |+++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp----------- 379 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL----------- 379 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-----------
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-----------
Confidence 67888888888888874 36666 467788999999999999999999998752 2221
Q ss_pred CccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 642 HHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 642 ~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
+-...+.++|.+|+.+|++++|..+|++|+++
T Consensus 380 ----------------~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 380 ----------------NVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 12456888999999999999999999999985
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.57 E-value=0.00028 Score=73.88 Aligned_cols=95 Identities=14% Similarity=-0.014 Sum_probs=73.7
Q ss_pred HhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTV-----FLTKK---SIWLKAAQLEKTHGSRESLIALLRKAVTY-----FPQA---EVLWLMG 430 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~ 430 (701)
...|+|++|+.+|++++.. .|+++ ..+..++.+|...|++++|+.++++++.. .|++ ...+..+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4568899999999999875 35555 46778889999999999999999999865 3444 4457788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-----CCCCHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYAT-----IPNSEEIW 461 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~-----~p~~~~~~ 461 (701)
|.+|..+|++++|+..|+++++. .|+++.+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 88888888888888888888875 36655543
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.44 E-value=0.00062 Score=71.36 Aligned_cols=95 Identities=15% Similarity=-0.046 Sum_probs=71.9
Q ss_pred HhcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTV-----FLTKK---SIWLKAAQLEKTHGSRESLIALLRKAVTY-----FPQA---EVLWLMG 430 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~~ 430 (701)
..+|++++|+..|++++.. .|+++ .++..++.++...|++++|+.++++++.. .|.+ ...+..+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 6788999999999999875 25554 46778888888899999999999888864 3344 3457778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-----CCCCHHHH
Q 040951 431 AKEKWLAGDVPAARDILQEAYAT-----IPNSEEIW 461 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~-----~p~~~~~~ 461 (701)
|.++..+|++++|+..|+++++. .|+++.+.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88888888888888888888765 36655443
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.42 E-value=0.0018 Score=67.77 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=47.4
Q ss_pred HcCcHHHHHHHHHHHHhcC-----CC----HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC-----CCC---HHHHHHHH
Q 040951 470 ENRELERARMLLAKARDMG-----GT----ERVWMKSAIVERELGNNAEERGFIEEGLKRF-----PSF---FNLWLMLG 532 (701)
Q Consensus 470 ~~~~~~~A~~~~~~a~~~~-----p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~la 532 (701)
..|++++|+.++++++... |+ ..++..++.+|..+|++++|+.++++++... |++ ...++.+|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4556666666666665431 11 3445555666666666666666666665431 333 23455666
Q ss_pred HHHHHcCCHHHHHHHHHHHhh
Q 040951 533 QLEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 533 ~~~~~~~~~~~A~~~~~~al~ 553 (701)
.+|..+|++++|+..|+++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.39 E-value=0.0027 Score=52.76 Aligned_cols=93 Identities=12% Similarity=-0.031 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHH---HHHHHHHHHhcC-CC--HHHHHHHHHHHHHhCChHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEEIWLAAFKLEFENRELER---ARMLLAKARDMG-GT--ERVWMKSAIVERELGNNAEERGF 513 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~-p~--~~~~~~~a~~~~~~g~~~~A~~~ 513 (701)
...++..|.+....++.+.+..+.++..+....+... ++.+++..+... |. .+..+.+|..+.+.|+|.+|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4445555666666555666666666666666655444 666666666655 42 45566666666677777777777
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 040951 514 IEEGLKRFPSFFNLWLMLG 532 (701)
Q Consensus 514 ~~~al~~~p~~~~~~~~la 532 (701)
++.+|+..|++..+.....
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHH
Confidence 7777777776655544433
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.24 E-value=0.0041 Score=51.65 Aligned_cols=86 Identities=9% Similarity=-0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhhC-C-CCHHHHHHHHHHHhhhccCCCHHHHHHH
Q 040951 510 ERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKE---AKEAYQSGCNQC-P-NCIPLWYSLANLEEKRNGLNGLSKARAV 584 (701)
Q Consensus 510 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~g~~~~A~~~ 584 (701)
+...|.+.+...+.+....+.+|..+....+... ++.+++..++.. | ..-+..+.+|..+.+ .|+|.+|+.+
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk---lg~Y~~A~~~ 96 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR---LKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---hhhHHHHHHH
Confidence 3334444444444444455555554444443333 444444444443 2 233444444444445 5555555555
Q ss_pred HHHHHHhCCCCHHH
Q 040951 585 LSVARLKNPLNPEI 598 (701)
Q Consensus 585 ~~~a~~~~p~~~~~ 598 (701)
++.+++..|+|..+
T Consensus 97 ~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 97 VRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHCTTCHHH
T ss_pred HHHHHHhCCCCHHH
Confidence 55555555555433
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.02 E-value=0.004 Score=54.14 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=30.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 040951 396 AAQLEKTHGSRESLIALLRKAVTYF---PQA------EVLWLMGAKEKWLAGDVPAARDILQEAYAT 453 (701)
Q Consensus 396 la~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~ 453 (701)
-.......|.++.|+-+...++... |+. ..+...+|..++..+++.+|...|++++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3344445555666555555544332 221 124555666666666666666666665543
No 228
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.99 E-value=0.17 Score=51.60 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=48.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----CC----HHHH
Q 040951 429 MGAKEKWLAGDVPAARDILQEAYATIPN------SEEIWLAAFKLEFENRELERARMLLAKARDMG----GT----ERVW 494 (701)
Q Consensus 429 ~~a~~~~~~g~~~~A~~~l~~a~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----p~----~~~~ 494 (701)
.++.++...|++.+|...+.+....... -.++++.-+++|...+++.++...+.++.... ++ ..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4555555556666655555555543322 12234445555666666666666665554321 22 2333
Q ss_pred HHHHHHHH-HhCChHHHHHHHHHHHHhC
Q 040951 495 MKSAIVER-ELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 495 ~~~a~~~~-~~g~~~~A~~~~~~al~~~ 521 (701)
...|.++. ..++|..|...|-+++..+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 44455555 5666666666665555443
No 229
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.61 E-value=0.07 Score=54.39 Aligned_cols=95 Identities=20% Similarity=0.069 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhCCC---C---HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC---CCCH----
Q 040951 530 MLGQLEERLGHLKEAKEAYQSGCNQCPN---C---IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN---PLNP---- 596 (701)
Q Consensus 530 ~la~~~~~~~~~~~A~~~~~~al~~~p~---~---~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~---- 596 (701)
.+|.+|...|++.+|.+.+.+.++.+.. . .+++..-++++.. .+++.+++..+.++.... +.+|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~---~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA---LSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH---hccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 5666666666666666666666553322 1 3445555566666 677777777776665432 1222
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCC
Q 040951 597 EIWLATIRAES-KHGNKKEADSFIAKALQKCP 627 (701)
Q Consensus 597 ~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p 627 (701)
.+...-|.++. ..++|..|...|-.++....
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 34444555666 67777777777666665443
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.51 E-value=0.018 Score=50.08 Aligned_cols=131 Identities=12% Similarity=-0.037 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcC---CC-------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC---CCCHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMG---GT-------ERVWMKSAIVERELGNNAEERGFIEEGLKRF---PSFFN 526 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~---p~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 526 (701)
+++.-++.+...+.|+.|+-+...++... |+ ..+...+|..++..|+|..|...|+++++.. +..+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566666777777777766655432 22 2355666777777777777777777765542 22211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 606 (701)
.....+ + . ..+..... .+.+.++.+.++.++.. .+++..|+..++..-. .-..+.+-..+|++|
T Consensus 102 ~~~~~~-~---~-------ss~p~s~~-~~~e~Elkykia~C~~~---l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTG-N---S-------ASTPQSQC-LPSEIEVKYKLAECYTV---LKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHH---TTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred cccccc-c---c-------CCCccccc-ccchHHHHHHHHHHHHH---HCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 110000 0 0 00000001 12344667777777777 7777777777665311 123556666666654
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.23 E-value=0.33 Score=55.29 Aligned_cols=97 Identities=20% Similarity=0.177 Sum_probs=63.9
Q ss_pred HhcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 040951 367 KKRGSIETARA-IFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARD 445 (701)
Q Consensus 367 ~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 445 (701)
...++++.|.. ++ ..-|+ .......+.++...|.++.|....+ ++..-+ .+....|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHH
Confidence 56788888765 43 11120 1223666777788888888776552 222222 23456788888887
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 040951 446 ILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKA 484 (701)
Q Consensus 446 ~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 484 (701)
+.+ ..+++..|..+|..+...++++.|..+|.++
T Consensus 674 ~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 754 2356788889999999999999888888764
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.15 E-value=0.076 Score=44.16 Aligned_cols=75 Identities=13% Similarity=-0.092 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHH
Q 040951 489 GTERVWMKSAIVERELGN---NAEERGFIEEGLKRFPS-FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWY 563 (701)
Q Consensus 489 p~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 563 (701)
|++.+-+.+|..+....+ ..+++.+++..++..|. .-+.++.+|..+.+.|+|++|+.+.+.+++..|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 345555555555444432 23455556665555553 2455555566666666666666666666666666544433
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.05 E-value=0.21 Score=42.13 Aligned_cols=70 Identities=6% Similarity=-0.015 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHcCcH---HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH
Q 040951 457 SEEIWLAAFKLEFENREL---ERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN 526 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 526 (701)
+.+..+.++..+....+. .+++.+++..+...|. .+..+.+|..+.+.|+|.+|+.+.+.+|+..|++..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 344444555544444322 2344455554444443 334444444445555555555555555555555433
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.99 E-value=0.11 Score=43.78 Aligned_cols=80 Identities=13% Similarity=-0.112 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHH
Q 040951 488 GGTERVWMKSAIVERELGN---NAEERGFIEEGLKRFPS-FFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWY 563 (701)
Q Consensus 488 ~p~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 563 (701)
.|+..+-+.++..+....+ ..+++.+++..+...|. .-+.++.+|..+.+.|+|++|+.+.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3557777777777766554 44677788888877774 4567777777788888888888888888888888766544
Q ss_pred HHHH
Q 040951 564 SLAN 567 (701)
Q Consensus 564 ~la~ 567 (701)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.95 E-value=2.4 Score=46.02 Aligned_cols=265 Identities=10% Similarity=0.006 Sum_probs=141.6
Q ss_pred HHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 040951 378 IFSHACTVFLTKKSIWLK---AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI 454 (701)
Q Consensus 378 ~~~~al~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~ 454 (701)
-+...+..+|+.+..... +...+.+.+++.....++.. .|.+...-+.++......|+..+|......+....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 345566778887754333 33334456677766664443 37788888888888888898877777666655444
Q ss_pred CCCHHHHH------------------HHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHH
Q 040951 455 PNSEEIWL------------------AAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEE 516 (701)
Q Consensus 455 p~~~~~~~------------------~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~ 516 (701)
...+...- ..+......|+...|..+...+ .++...+... .+ .-..+..........
T Consensus 133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l---~~~~~~~a~~-~~-al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PADYQTIASA-II-SLANNPNTVLTFART 207 (618)
T ss_dssp SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGGHHHHHH-HH-HHHHCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC---CHHHHHHHHH-HH-HHHhChHhHHHHHhc
Confidence 32222222 2223334444444444432221 1111111110 00 011122222111110
Q ss_pred HHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHH----HHHHHHHHhhhccCCCHHHHHHHHHHHHHh
Q 040951 517 GLKRFPSFF-NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPL----WYSLANLEEKRNGLNGLSKARAVLSVARLK 591 (701)
Q Consensus 517 al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~~~~g~~~~A~~~~~~a~~~ 591 (701)
..|... .-...++.-.....+.+.|...+.......+-+..- +..++.-... .+...++...+.+....
T Consensus 208 ---~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~---~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 208 ---TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG---NDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS---TTCCHHHHHHHHHHHHT
T ss_pred ---cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH---cCCChHHHHHHHhcccc
Confidence 112111 122223333344458888988888776544444332 2222222223 44356777777776543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHH
Q 040951 592 NPLNPEIWLATIRAESKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFW 671 (701)
Q Consensus 592 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~ 671 (701)
+.+..+....+....+.|++..|...+.++ |... ...+...+-+|+.+.
T Consensus 282 -~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l----~~~~--------------------------~~~~r~~YW~~ra~~ 330 (618)
T 1qsa_A 282 -SQSTSLIERRVRMALGTGDRRGLNTWLARL----PMEA--------------------------KEKDEWRYWQADLLL 330 (618)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CTTG--------------------------GGSHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHc----cccc--------------------------cccHhHHHHHHHHHH
Confidence 444445555556667789999888877543 2210 013667788899999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 040951 672 HDRKVDKARNWFNKAVS 688 (701)
Q Consensus 672 ~~g~~~~A~~~~~~al~ 688 (701)
..|+.++|..+|+++..
T Consensus 331 ~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 331 ERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHhc
Confidence 99999999999999875
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.81 E-value=0.13 Score=42.76 Aligned_cols=78 Identities=5% Similarity=-0.040 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 040951 457 SEEIWLAAFKLEFENRE---LERARMLLAKARDMGGT--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLML 531 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~p~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 531 (701)
+....+.++..+....+ ..+++.+++..+...|. .+.++.+|..+.+.|+|..|+.+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 56777777777777654 35678888888877775 67777788888888888888888888888888887665554
Q ss_pred HHH
Q 040951 532 GQL 534 (701)
Q Consensus 532 a~~ 534 (701)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.084 Score=58.52 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=80.0
Q ss_pred HHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HH-cCcHHHHHHHHHHHHhc--------CCC--------
Q 040951 431 AKEKWLAGD-VPAARDILQEAYATIPNSEEIWLAAFKLE--FE-NRELERARMLLAKARDM--------GGT-------- 490 (701)
Q Consensus 431 a~~~~~~g~-~~~A~~~l~~a~~~~p~~~~~~~~la~~~--~~-~~~~~~A~~~~~~a~~~--------~p~-------- 490 (701)
.++....+. ++.|+..|++....+|.... .+..+.+. .. ..+--+|.+++.+.++. .+.
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 333334555 58899999999999987433 22222222 12 23445577777776642 111
Q ss_pred ---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040951 491 ---ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQS 550 (701)
Q Consensus 491 ---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 550 (701)
..+...-+.++...|+++-|+.+.++++...|.....|..|+.+|..+|+++.|+-.+..
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 123344467777888888888888888888888888888888888888888888876544
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.50 E-value=3.6 Score=44.70 Aligned_cols=52 Identities=8% Similarity=-0.232 Sum_probs=34.9
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040951 563 YSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFI 619 (701)
Q Consensus 563 ~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 619 (701)
+..+..+.. .|....|...+....... ++.-...++.+....|.+..++...
T Consensus 385 ~~r~~~L~~---~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 385 MARVRELMY---WNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH---CCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 344555667 888888888888776543 3444556777777788877766544
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.35 E-value=1.2 Score=38.39 Aligned_cols=98 Identities=18% Similarity=0.071 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChHHHHHHHHHHHHh-----------------C
Q 040951 459 EIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNAEERGFIEEGLKR-----------------F 521 (701)
Q Consensus 459 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------------~ 521 (701)
+..+.++-.+.-+|++.+++-++.. ..+....+.-..++....++.+|+..++..+.- +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 4444555555566666666654432 223333333345556666777777777666621 1
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH
Q 040951 522 PSFFN-LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP 560 (701)
Q Consensus 522 p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 560 (701)
|.+.+ ++..+|.++.+.|+.++|+..|.......|-.+.
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 33322 3445566666666666666666666666655433
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.34 E-value=0.47 Score=54.04 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=35.5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKA 416 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 416 (701)
...|+++.|.++.+ ..++...|..+|..+.+.|+++.|..+|.++
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66788888877653 3456788888888888888888888888775
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=3.4 Score=42.99 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCC--CC----HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH---hCCCCH
Q 040951 526 NLWLMLGQLEERLGHLKEAKEAYQSGCNQCP--NC----IPLWYSLANLEEKRNGLNGLSKARAVLSVARL---KNPLNP 596 (701)
Q Consensus 526 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~---~~p~~~ 596 (701)
.+...++.++...|++.+|..++.....-.- .+ .+++....+++.. .+++.+|...+.++.. ..+..+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~---~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL---KGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhhcccCCcH
Confidence 4556777888888888888887777653211 11 4567777777777 8888888888887642 234444
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHH-------HHhcCCCccchhHHHHHHHhcCC--ChH
Q 040951 597 ----EIWLATIRAESKHGNKKEADSFIAKALQKCP--NSGILWAE-------LIKMVPHHDRKSKGKDALVKSDR--DPH 661 (701)
Q Consensus 597 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~l~~~-------~~~~~~~~~~~~~~~~al~~~p~--~~~ 661 (701)
.++...|.++...++|.+|...|..++.... .++.-|.. .+.+.+..........-+...+. +..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~ 294 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLE 294 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccH
Confidence 3556677777788888888888877776422 12222211 11122322222222222222222 223
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHhCC
Q 040951 662 VFAAVAKLFWH--DRKVDKARNWFNKAVSLDP 691 (701)
Q Consensus 662 ~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p 691 (701)
.+..+...|.. ..+++.....|...+..+|
T Consensus 295 ~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 295 SQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 45555666553 3556666666665554443
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.14 Score=56.67 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=88.9
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHc-CChHHHHHHHHHHHHh--------CCCC------
Q 040951 395 KAAQLEKTHGS-RESLIALLRKAVTYFPQAEVLWLM-GAKEKWLA-GDVPAARDILQEAYAT--------IPNS------ 457 (701)
Q Consensus 395 ~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~-g~~~~A~~~l~~a~~~--------~p~~------ 457 (701)
.+..+....|. ++.|..++++....+|.....+.. +..+.... .+--+|+.++.+.++. .+.+
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 33344444555 688999999999999976543322 22222222 2344688888887753 1222
Q ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHH
Q 040951 458 ----EEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEG 517 (701)
Q Consensus 458 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~a 517 (701)
..+...-+.++...|+++-|+++.++++...|+ -..|+.++.+|...|+++.|+-.++.+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 224445688888999999999999999999999 999999999999999999999776554
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.92 E-value=1.1 Score=39.62 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=61.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
...|+++.|.++.+.. ++...|..+|......|+++-|..+|.++- + +-.+.-+|...|+.++-...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHHHHhCCHHHHHHH
Confidence 7788888888877654 567788888888888888888888887752 1 12233344456666655544
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 040951 447 LQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483 (701)
Q Consensus 447 l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 483 (701)
-+.+....- +......+...|++++++++|.+
T Consensus 83 a~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433321 12223344456666666666644
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.48 E-value=0.81 Score=43.26 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHH
Q 040951 501 ERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSK 580 (701)
Q Consensus 501 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~ 580 (701)
....|+++.|+..+...++..|.+......+.+++.-.|++++|...++.+.+.+|.....-..+..+... +.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-------E~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------AQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------HH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------HH
Confidence 45678999999999999999999999999999999999999999999999999999875543333222111 11
Q ss_pred HHHHHHHH--HHhCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 040951 581 ARAVLSVA--RLKNPLNPEIWLAT---IRAESKHGNKKEADSFIAKALQKCPNSG 630 (701)
Q Consensus 581 A~~~~~~a--~~~~p~~~~~~~~l---~~~~~~~g~~~~A~~~~~~al~~~p~~~ 630 (701)
.+.-+-.. .-..+..+..|... +......|+.++|..+-.++++.-|..+
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11111000 00112333334432 3345568999999999999999988654
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.43 E-value=2.3 Score=37.51 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=22.4
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 040951 436 LAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAK 483 (701)
Q Consensus 436 ~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 483 (701)
..|+++.|.++.+.. ++...|..++......|+++-|..+|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345555555554433 3455555555555555555555555554
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=6.2 Score=41.01 Aligned_cols=102 Identities=14% Similarity=0.214 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCC
Q 040951 559 IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKN--PLN----PEIWLATIRAESKHGNKKEADSFIAKALQ---KCPNS 629 (701)
Q Consensus 559 ~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~ 629 (701)
..+...++.++.. .|++.+|..++....... ..+ .++++...+++...+++.+|..++.++.. ..+..
T Consensus 137 arl~~~La~i~e~---~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 137 ARVTKDLVEIKKE---EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 3456789999999 999999999999876432 122 26888889999999999999999998743 23333
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 630 GILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 630 ~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
+.+. ..++...|.++...++|.+|-..|..++..
T Consensus 214 ~~lk--------------------------~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLK--------------------------LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHH--------------------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHH--------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2221 345566778888888888888888877654
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.17 E-value=0.41 Score=45.25 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=28.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 040951 402 THGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPN 456 (701)
Q Consensus 402 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~ 456 (701)
+.|+.++++..+...++.+|.+......+.++++..|++++|..-++.+.+.+|.
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3445555555555555555555555555555555555555555555555555554
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.07 E-value=0.76 Score=52.19 Aligned_cols=97 Identities=10% Similarity=-0.135 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHH
Q 040951 391 SIWLKAAQLEKTHGSRESLIALLRKAVT----YFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATI--PNSEEIWLAA 464 (701)
Q Consensus 391 ~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~--p~~~~~~~~l 464 (701)
..+..+...+.+.|+.++|..+|..+.. -+.-+...|..+...+.+.|++++|.++|+++.... | +...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 3566677777777777777777765432 234456667777777777777777777777776654 4 46666666
Q ss_pred HHHHHHcCc-HHHHHHHHHHHHhcC
Q 040951 465 FKLEFENRE-LERARMLLAKARDMG 488 (701)
Q Consensus 465 a~~~~~~~~-~~~A~~~~~~a~~~~ 488 (701)
...+.+.|+ .++|.++|+++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 667777666 466777777777654
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.04 E-value=0.92 Score=51.51 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCHHHHH
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYA-----TIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG--GTERVWM 495 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~-----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~ 495 (701)
....+..+...+.+.|++++|..+|..+.. ..| +...|..+..-+++.|+.++|.++|+++.... |+...|.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345688889999999999999999977643 235 58899999999999999999999999998754 7788888
Q ss_pred HHHHHHHHhCCh-HHHHHHHHHHHHhC
Q 040951 496 KSAIVERELGNN-AEERGFIEEGLKRF 521 (701)
Q Consensus 496 ~~a~~~~~~g~~-~~A~~~~~~al~~~ 521 (701)
.+...+.+.|+. +.|..+|+++....
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888888888875 78899999998875
No 250
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=93.26 E-value=1.8 Score=38.98 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=57.1
Q ss_pred HHHHHHHHHCCCC---------HHHHHHHHhc--cC-hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChhHHHHH
Q 040951 264 ILLHRAVECCPLD---------VELWLALARL--ET-YGVARSVLNKARKKL--PKERAIWIAAAKLEEANGNTSMVGKI 329 (701)
Q Consensus 264 ~~l~~a~~~~P~~---------~~l~~~l~~l--~~-~~~A~~~l~~a~~~~--p~~~~~~~~~a~~~~~~g~~~~a~~~ 329 (701)
.++++++...-++ ..+|+.++++ .+ ..++..+|.-+.... -.....|..+|.+++..|++.+|..+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5677776643332 4688888887 43 668888888877655 45688999999999999999999999
Q ss_pred HHHHHHH
Q 040951 330 IERGIRA 336 (701)
Q Consensus 330 ~~~a~~~ 336 (701)
|+.+++.
T Consensus 138 y~~GI~~ 144 (202)
T 3esl_A 138 LELGAEN 144 (202)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999984
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=2.2 Score=44.64 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 491 ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSF-------FNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 491 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
..++..+.+.|...+.++.|..+..++. +|.+ ...++.+|.++.-+++|.+|.+.+..++..+|.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 4455555555556666666666655552 3321 234455566666666666666666666666554
No 252
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=92.47 E-value=2 Score=36.74 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=52.8
Q ss_pred HHHHHHHHHHCCC------C---HHHHHHHHhccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040951 263 RILLHRAVECCPL------D---VELWLALARLETYGVARSVLNKARKKL--PKERAIWIAAAKLEEANGNTSMVGKIIE 331 (701)
Q Consensus 263 ~~~l~~a~~~~P~------~---~~l~~~l~~l~~~~~A~~~l~~a~~~~--p~~~~~~~~~a~~~~~~g~~~~a~~~~~ 331 (701)
..++++++....+ | ..+|+.++++. +++..+|.-+.... -.....|..+|.+++..|++.+|..+|+
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB--SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555554332 2 36777777764 33677777766554 4568899999999999999999999999
Q ss_pred HHHHH
Q 040951 332 RGIRA 336 (701)
Q Consensus 332 ~a~~~ 336 (701)
.+++.
T Consensus 126 ~Gi~~ 130 (152)
T 4a1g_A 126 RGIQN 130 (152)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99985
No 253
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=92.39 E-value=1.8 Score=37.06 Aligned_cols=110 Identities=6% Similarity=0.018 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhC-CCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHhcCCCcc
Q 040951 579 SKARAVLSVARLKN-PLNP-EIWLATIRAESK---HGNKKEADSFIAKALQKCPNSG---------ILWAELIKMVPHHD 644 (701)
Q Consensus 579 ~~A~~~~~~a~~~~-p~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~~~---------~l~~~~~~~~~~~~ 644 (701)
..++..|+..+... .++| +.|..++..... .|. ..-..+++++++...++. .+|..++.+...
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~d-- 83 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD-- 83 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC--
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCC--
Confidence 33444455544432 2333 455555543332 122 223455555555543332 456666655422
Q ss_pred chhHHHHHH--HhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040951 645 RKSKGKDAL--VKSDRDPHVFAAVAKLFWHDRKVDKARNWFNKAVSLDP 691 (701)
Q Consensus 645 ~~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 691 (701)
....+.-.. ...-..+..+...|.++...|++.+|.++|+.+++...
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 122222211 12235678888899999999999999999999998653
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.70 E-value=2.1 Score=43.71 Aligned_cols=55 Identities=16% Similarity=0.101 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Q 040951 531 LGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVA 588 (701)
Q Consensus 531 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a 588 (701)
++..+...|++.+++..+..++..+|-+-.+|..+..++.. .|+..+|+..|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~---~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL---SDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT---TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555 55555555555444
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.70 E-value=2.7 Score=42.89 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=77.3
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHH
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHL-KEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSK 580 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~ 580 (701)
...|+...|...+.+++.......-. .+. ...+ ...+..++... ..+...++..+.. .|++.+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~-----~~~--~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~---~g~~~~ 189 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLD-----DLR--DFQFVEPFATALVEDK------VLAHTAKAEAEIA---CGRASA 189 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTG-----GGT--TSTTHHHHHHHHHHHH------HHHHHHHHHHHHH---TTCHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCC-----CCC--chhHHHHHHHHHHHHH------HHHHHHHHHHHHH---CCCHHH
Confidence 34588889999999999887442100 000 0111 11122222211 1345567777888 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 581 ARAVLSVARLKNPLNPEIWLATIRAESKHGNKKEADSFIAKALQK 625 (701)
Q Consensus 581 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 625 (701)
|+..+.+++..+|-+..+|..+..++.+.|+..+|...|+++-..
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887553
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=91.40 E-value=7.7 Score=34.82 Aligned_cols=115 Identities=10% Similarity=0.147 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHc---CCH---HHHH-HHHHHHHHhC---------CCcHHHHHHHHH
Q 040951 373 ETARAIFSHACTV----FLTKKSIWLKAAQLEKTH---GSR---ESLI-ALLRKAVTYF---------PQAEVLWLMGAK 432 (701)
Q Consensus 373 ~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~---g~~---~~A~-~~~~~al~~~---------p~~~~~~~~~a~ 432 (701)
...+..|+..+.. ..+-...|..+....... |.. .... .++++++... |....+|+.++.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 3445556665554 233346788777654432 222 2234 5777777642 223456777766
Q ss_pred HHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 040951 433 EKWLAGDVPAARDILQEAYATI--PNSEEIWLAAFKLEFENRELERARMLLAKARDMG 488 (701)
Q Consensus 433 ~~~~~g~~~~A~~~l~~a~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 488 (701)
.. ..++...+..+|.-+.... -.....|...|.++...|++.+|..+|+..++..
T Consensus 89 ~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 89 LF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 54 2344667777777776654 3356667777777777788888888888777755
No 257
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=90.78 E-value=2.7 Score=38.42 Aligned_cols=73 Identities=8% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCH---------HHHHHHHhcCCCccchhHHHHHHH--hcCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 040951 616 DSFIAKALQKCPNSG---------ILWAELIKMVPHHDRKSKGKDALV--KSDRDPHVFAAVAKLFWHDRKVDKARNWFN 684 (701)
Q Consensus 616 ~~~~~~al~~~p~~~---------~l~~~~~~~~~~~~~~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 684 (701)
..++++++....++. .+|..++.+.. .....+.-... ..-..+..|...|.++...|++.+|..+|+
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~--~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYID--EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCS--CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHccC--CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666554443 45666665432 11222222222 233567888889999999999999999999
Q ss_pred HHHHhC
Q 040951 685 KAVSLD 690 (701)
Q Consensus 685 ~al~~~ 690 (701)
.+++..
T Consensus 175 ~Gi~~~ 180 (223)
T 4aez_C 175 KGKRMK 180 (223)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 999865
No 258
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.54 E-value=5 Score=36.69 Aligned_cols=105 Identities=10% Similarity=0.199 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHhhc--------C-HHHHHHHHHHHHHHCCCC---------HHHHHHHHhccCh
Q 040951 231 NKSRVLRMALDEI---PDSVRLWKALVEIS--------S-EEEARILLHRAVECCPLD---------VELWLALARLETY 289 (701)
Q Consensus 231 ~a~~~l~kal~~~---P~~~~l~~~~~~l~--------~-~~~A~~~l~~a~~~~P~~---------~~l~~~l~~l~~~ 289 (701)
..+..|+..|... .+-..+|..||.-- + -..-..++++++...-++ ..+|+.|+++.
T Consensus 53 ~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~-- 130 (223)
T 4aez_C 53 KERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI-- 130 (223)
T ss_dssp HHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc--
Confidence 4455566555531 23344777776421 1 112346777777765544 36888888864
Q ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q 040951 290 GVARSVLNKARKKL--PKERAIWIAAAKLEEANGNTSMVGKIIERGIRAL 337 (701)
Q Consensus 290 ~~A~~~l~~a~~~~--p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~~ 337 (701)
+++..+|.-+.... -.....|..+|.+++..|++.+|..+|+.+++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 46777787776654 4568899999999999999999999999999853
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.50 E-value=1.8 Score=44.88 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---CC----HHHHH
Q 040951 426 LWLMGAKEKWLAGDVPAARDILQEAYATIPN---SEEIWLAAFKLEFENRELERARMLLAKARDMG---GT----ERVWM 495 (701)
Q Consensus 426 ~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---p~----~~~~~ 495 (701)
++..+|..+...|+++.|.++|.++...... -.++++....++...+++..+...+.++.... ++ ..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444555555555555555555555443322 23345555555555555555555555554321 11 12223
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHhC
Q 040951 496 KSAIVERELGNNAEERGFIEEGLKRF 521 (701)
Q Consensus 496 ~~a~~~~~~g~~~~A~~~~~~al~~~ 521 (701)
..|.++...++|..|...|-.++..+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 33444555666766666666665554
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.34 E-value=0.93 Score=47.43 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 559 IPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLN-------PEIWLATIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 559 ~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
..++..+.+.|.. .+.++.|..+..++. .|.+ ...++.+|++..-.++|.+|...+..|+..+|.+
T Consensus 231 a~l~nllLRnYL~---~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLN---NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHH---SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHc---cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4456677777777 777777777777663 4432 2345566777777777777777777777777654
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.91 E-value=2.4 Score=44.67 Aligned_cols=77 Identities=9% Similarity=-0.018 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEE 536 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 536 (701)
....+|.+..-...+..|...|.+|....|+ ...+..+|.+....|+.-.|.-+|-+++......+.+..++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3445666666666666777777777777776 6667777777666666666666666666655445666666655544
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.61 E-value=4.2 Score=42.11 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 040951 460 IWLAAFKLEFENRELERARMLLAKARDMGGT----ERVWMKSAIVERELGNNAEERGFIEEGL 518 (701)
Q Consensus 460 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~a~~~~~~g~~~~A~~~~~~al 518 (701)
++..+|.++...|+++.|.++|.++.....+ ..++....+++...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445555555666666666665555543322 4455555555555555555555555553
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.36 E-value=9.6 Score=45.06 Aligned_cols=188 Identities=7% Similarity=-0.104 Sum_probs=100.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH--------------------HhC-
Q 040951 396 AAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAY--------------------ATI- 454 (701)
Q Consensus 396 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~--------------------~~~- 454 (701)
+...+...|.++-+.. .+..+|.++..-+.+|.++...|++++|..+|+++- ...
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3344455555554433 334566666666777777777777777777775541 111
Q ss_pred --CCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH
Q 040951 455 --PNSEEIWLAAFKLEFENRELERARMLLAKARDMGGT------ERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN 526 (701)
Q Consensus 455 --p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 526 (701)
..-...++..+.++...+.++.+++....++...+. ...|..+-..+...|+|++|...+...-... .-..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHH
Confidence 113445666777777778888888877777765432 2256666666777788887766654332111 1123
Q ss_pred HHHHHHHHHHH------------cCCHHHHHHHHHHHhh-h-CCCC-HHHHHHHHHHHhhhccCCCHHHH-HHHHHHHHH
Q 040951 527 LWLMLGQLEER------------LGHLKEAKEAYQSGCN-Q-CPNC-IPLWYSLANLEEKRNGLNGLSKA-RAVLSVARL 590 (701)
Q Consensus 527 ~~~~la~~~~~------------~~~~~~A~~~~~~al~-~-~p~~-~~~~~~la~~~~~~~~~g~~~~A-~~~~~~a~~ 590 (701)
.+..+...... .|..++..+++..-.+ . ++.+ +..+..+-.++.. .|++.+| ..+|+++.+
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~---r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYK---HQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH---HHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhc---cCChHHHHHHHHHHHHH
Confidence 33333322222 2445555555543221 1 2333 3333333333444 5666544 456777665
Q ss_pred h
Q 040951 591 K 591 (701)
Q Consensus 591 ~ 591 (701)
.
T Consensus 1050 L 1050 (1139)
T 4fhn_B 1050 Y 1050 (1139)
T ss_dssp H
T ss_pred h
Confidence 4
No 264
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.23 E-value=12 Score=32.36 Aligned_cols=77 Identities=13% Similarity=-0.061 Sum_probs=40.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVFLTKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDI 446 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 446 (701)
.+-.+++.+.-+-.-.+ |.+++.-+.+.-.+.-.|.+..+.-.+.. -+.....+.-+-++....++..|+..
T Consensus 13 ~kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666643332222 33334444555556666776665544322 23344444555566667777777777
Q ss_pred HHHHH
Q 040951 447 LQEAY 451 (701)
Q Consensus 447 l~~a~ 451 (701)
++..+
T Consensus 85 le~il 89 (242)
T 3kae_A 85 LESIL 89 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.20 E-value=25 Score=41.58 Aligned_cols=191 Identities=11% Similarity=-0.065 Sum_probs=115.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------------------C
Q 040951 430 GAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG--------------------G 489 (701)
Q Consensus 430 ~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------------p 489 (701)
+...+...+.++-+.. .....|.++..-+.+|.++...|++++|..+|+++.... +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4445566777766654 334567777777889999999999999999998874211 0
Q ss_pred --C--HHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH
Q 040951 490 --T--ERVWMKSAIVERELGNNAEERGFIEEGLKRFPS-FF----NLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP 560 (701)
Q Consensus 490 --~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 560 (701)
. +..|.....++...|.++.+++....|++..+. +. .+|..+-..+...|+|++|...+...-. ......
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHH
Confidence 1 345666677888889999999999999987643 32 2677777788899999999887754321 112233
Q ss_pred HHHHHHHHHhhhc---------cCCCHHHHHHHHH-HHHHh-CCCC-HHHHHHHHHHHHhcCCHH-HHHHHHHHHHHh
Q 040951 561 LWYSLANLEEKRN---------GLNGLSKARAVLS-VARLK-NPLN-PEIWLATIRAESKHGNKK-EADSFIAKALQK 625 (701)
Q Consensus 561 ~~~~la~~~~~~~---------~~g~~~~A~~~~~-~a~~~-~p~~-~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~ 625 (701)
....+.......+ ..|..++.-.++. +|... ++.+ +..+..+-.++...|++. .|..+|+++.+.
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 3333333222200 1244444333333 22222 2222 233443444455556665 445566666554
No 266
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=87.59 E-value=3.5 Score=35.80 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=44.3
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 040951 278 ELWLALARLETYGVARSVLNKARKKL--PKERAIWIAAAKLEEANGNTSMVGKIIERGIRA 336 (701)
Q Consensus 278 ~l~~~l~~l~~~~~A~~~l~~a~~~~--p~~~~~~~~~a~~~~~~g~~~~a~~~~~~a~~~ 336 (701)
.+|+.++.+. +++..+|..+.... -.....|..+|.+++..|++.+|..+|..+++.
T Consensus 67 klWl~ya~~~--~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 67 NLWLKLGRLC--NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHC--SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5677777664 34566666665544 456889999999999999999999999999985
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=86.62 E-value=12 Score=32.52 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHHHHHhh--hCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCC
Q 040951 544 AKEAYQSGCN--QCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNP 593 (701)
Q Consensus 544 A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p 593 (701)
+.++|..+.. +.-..+.+|..+|.++.. .|++.+|.++|..+++...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~---~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEA---RENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC
Confidence 3444444433 344456666666666666 6677777777776666553
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.60 E-value=11 Score=31.37 Aligned_cols=122 Identities=15% Similarity=0.031 Sum_probs=83.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------HHHH---------HcCCHHHHHHHHHHHHHhCCC
Q 040951 363 AEECKKRGSIETARAIFSHACTVFLTKKSIWLKAA-----------QLEK---------THGSRESLIALLRKAVTYFPQ 422 (701)
Q Consensus 363 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-----------~~~~---------~~g~~~~A~~~~~~al~~~p~ 422 (701)
|......|..++..++..+.....|-+..-|.--- ..+- ..|+.......+-+ .+.
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~---~n~- 89 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVI---NNT- 89 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHH---TTC-
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHH---hcc-
Confidence 34457889999999999999988876666665211 1111 12333333333322 122
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 040951 423 AEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMG 488 (701)
Q Consensus 423 ~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 488 (701)
+....-+....+...|.-++-.+++...+..+|-++++.+.++..|.+.|+..+|.+++.+|.+..
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 223333344556678999999999988777777789999999999999999999999999998754
No 269
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.91 E-value=4.1 Score=42.82 Aligned_cols=80 Identities=11% Similarity=-0.001 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhh
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEK 571 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 571 (701)
.....+|.+.+....+..|..+|.+|+...|++...+..+|.+....|+.-+|.-.|-+++......+.+..++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999998777788888888877764
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.19 E-value=17 Score=30.28 Aligned_cols=144 Identities=16% Similarity=0.018 Sum_probs=73.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCChH
Q 040951 429 MGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKLEFENRELERARMLLAKARDMGGTERVWMKSAIVERELGNNA 508 (701)
Q Consensus 429 ~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~a~~~~~~g~~~ 508 (701)
+-|+-....|..++..++..+.....|-+..-|+-.--+ ..-+-+-..+.++..-+.+.- ...|+..
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNii--D~a~C~y~v~vLd~IGkiFDi-----------s~C~NlK 78 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLL--ESIDCRYMFQVLDKIGSYFDL-----------DKCQNLK 78 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHH--HHCCHHHHHHHHHHHGGGSCG-----------GGCSCTH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecc--hhhchhHHHHHHHHHhhhcCc-----------HhhhcHH
Confidence 345555667888888888888888777666656532111 111222222333322222110 1223444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Q 040951 509 EERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVA 588 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a 588 (701)
..+.+|-+. +.. .++.-..-.....+|+-++-.+++...+...+-++++.+.++..|.+ .|+..+|.+++.+|
T Consensus 79 rVi~C~~~~---n~~-se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K---lg~~r~a~eLl~~A 151 (172)
T 1wy6_A 79 SVVECGVIN---NTL-NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRR---VGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHHT---TCC-CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHh---cch-HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH---hcchhhHHHHHHHH
Confidence 444443321 111 22222222334556666666666666555555566666777777766 67777777766666
Q ss_pred HHhC
Q 040951 589 RLKN 592 (701)
Q Consensus 589 ~~~~ 592 (701)
-+..
T Consensus 152 C~kG 155 (172)
T 1wy6_A 152 CKKG 155 (172)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 6544
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.72 E-value=42 Score=32.94 Aligned_cols=25 Identities=28% Similarity=0.213 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLL 481 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~ 481 (701)
+++++..+|..+.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555555555555555555555544
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.96 E-value=1e+02 Score=35.08 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHhccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 040951 274 PLDVELWLALARLETYGVARSVLNKARKKLPKERAIWIAAAKLEEANGN 322 (701)
Q Consensus 274 P~~~~l~~~l~~l~~~~~A~~~l~~a~~~~p~~~~~~~~~a~~~~~~g~ 322 (701)
|+-+.+...++++++.+.+.++|++.+. .++..+-+.+|....+.+.
T Consensus 231 ~dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~ 277 (963)
T 4ady_A 231 CDYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSAS 277 (963)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccc
Confidence 3556677788888899999999888874 4566666666666655443
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.70 E-value=88 Score=30.32 Aligned_cols=26 Identities=8% Similarity=-0.128 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCcHHHHHHHHH
Q 040951 457 SEEIWLAAFKLEFENRELERARMLLA 482 (701)
Q Consensus 457 ~~~~~~~la~~~~~~~~~~~A~~~~~ 482 (701)
++.++..+|..+...+++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 67888888888888888888877664
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.30 E-value=1.1e+02 Score=29.90 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=46.9
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 040951 422 QAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLA-AFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAI 499 (701)
Q Consensus 422 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~ 499 (701)
.++.++..+|..++..+++.+|...|- +. ..++++.+.. +..++... .|. ...+...+.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~----------------~~~e~dlfiaRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQD----------------ESHTAPLYCARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTS----------------CGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhc----------------CCccHHHHHHHHH
Confidence 678999999999999999999888773 11 1112233322 22222111 133 444444444
Q ss_pred H-HHHhCChHHHHHHHHHHH
Q 040951 500 V-ERELGNNAEERGFIEEGL 518 (701)
Q Consensus 500 ~-~~~~g~~~~A~~~~~~al 518 (701)
+ +...++...|..++....
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 3 678888888888665544
No 275
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=58.31 E-value=0.00049 Score=70.23 Aligned_cols=252 Identities=12% Similarity=0.049 Sum_probs=129.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 040951 388 TKKSIWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIPNSEEIWLAAFKL 467 (701)
Q Consensus 388 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p~~~~~~~~la~~ 467 (701)
+.+.+|..+|......|...+|++.|-++ .+|. .+..........|.++.-+.++..+.+... .+.+-..++..
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 44567888888888777777777666443 2333 333444445566777777777766655432 22233344444
Q ss_pred HHHcCcHHHHHHHH------------HHHHhcC---------CCHHHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCCHH
Q 040951 468 EFENRELERARMLL------------AKARDMG---------GTERVWMKSAIVERELGNNAEERGFIEEGLKRFPSFFN 526 (701)
Q Consensus 468 ~~~~~~~~~A~~~~------------~~a~~~~---------p~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 526 (701)
|.+.++..+-.+.+ +++.+.. .+..-|..++.++...|++..|.+.-.+ .+++.
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK-----Ans~k 200 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK-----ANSTR 200 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT-----CCSSC
T ss_pred HHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh-----cCChh
Confidence 44444433211111 1111000 0001122233334444444444443332 24566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 040951 527 LWLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIPLWYSLANLEEKRNGLNGLSKARAVLSVARLKNPLNPEIWLATIRAE 606 (701)
Q Consensus 527 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 606 (701)
.|-.....+...+.+.-|.-+--..+ ..|+. .-.+...|.. .|.+++-+++++.++.....+..++..+|-+|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI-vhade---L~elv~~YE~---~G~f~ELIsLlEaglglErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---LEELINYYQD---RGYFEELITMLEAALGLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSC---CSGGGSSSST---TCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc-ccHHH---HHHHHHHHHh---CCCHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 67776667777776666554433332 23333 1223444556 78888888888888877777777888888777
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccchhHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHH
Q 040951 607 SKHGNKKEADSFIAKALQKCPNSGILWAELIKMVPHHDRKSKGKDALVKSDRDPHVFAAVAKLFWHDRKVDKAR 680 (701)
Q Consensus 607 ~~~g~~~~A~~~~~~al~~~p~~~~l~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 680 (701)
.+- .+++-.+.++-..... + .. +.++.|. ....|..+..+|.+-.++|.|.
T Consensus 274 sKY-~PeKlmEHlklf~sri-N-----------------ip---KviracE-~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRV-N-----------------IP---KVLRAAE-QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSS-C-----------------CT---TTHHHHT-TTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhc-c-----------------HH---HHHHHHH-HHhhHHHHHHHHhcchhHHHHH
Confidence 654 2333333222110000 0 00 1122222 3566777777777778887765
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.74 E-value=1.7e+02 Score=28.32 Aligned_cols=27 Identities=11% Similarity=-0.150 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHH
Q 040951 422 QAEVLWLMGAKEKWLAGDVPAARDILQ 448 (701)
Q Consensus 422 ~~~~~~~~~a~~~~~~g~~~~A~~~l~ 448 (701)
.++.++..+|..++..|++.+|+..|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578999999999999999988887775
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.59 E-value=97 Score=35.59 Aligned_cols=123 Identities=4% Similarity=-0.108 Sum_probs=62.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCcHH
Q 040951 397 AQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWLAGDVPAARDILQEAYATIP-NSEEIWLAAFKLEFENRELE 475 (701)
Q Consensus 397 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~a~~~~p-~~~~~~~~la~~~~~~~~~~ 475 (701)
...+...|.++-+ ...+..+|.++..-+.+|.++...|++++|..+|+++-.... .+..... ..
T Consensus 817 ~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~-----------~~ 881 (950)
T 4gq2_M 817 VEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV-----------LR 881 (950)
T ss_dssp HHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG-----------GH
T ss_pred HHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc-----------hh
Confidence 3344445555433 234455666666666666666666666666666665532210 0000000 00
Q ss_pred HHHHHHHHHHhcCCC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHhC-CCCHH----HHHHHHHHHHH
Q 040951 476 RARMLLAKARDMGGT---ERVWMKSAIVERELGNNAEERGFIEEGLKRF-PSFFN----LWLMLGQLEER 537 (701)
Q Consensus 476 ~A~~~~~~a~~~~p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~----~~~~la~~~~~ 537 (701)
....++. ...+. ...|...+.+....+-++.++...+.|++.- ++++. +|..+-.....
T Consensus 882 ~~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 882 EFQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 0000000 00111 3356666778888899999999999998754 44443 55555444443
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.11 E-value=1.7e+02 Score=33.51 Aligned_cols=52 Identities=4% Similarity=-0.192 Sum_probs=36.8
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 040951 497 SAIVERELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGC 552 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 552 (701)
+...+...|.++-+. ..+...|.++-.-+.+|.++...|++++|..+|+++-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444455666666443 3456677777777888888888888888888888764
No 279
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=44.03 E-value=2.1e+02 Score=29.43 Aligned_cols=60 Identities=3% Similarity=-0.149 Sum_probs=33.7
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcC--------CC---HHHHHHHHHHHHHhCChHHHHHHHHHHHHh-CCC
Q 040951 464 AFKLEFENRELERARMLLAKARDMG--------GT---ERVWMKSAIVERELGNNAEERGFIEEGLKR-FPS 523 (701)
Q Consensus 464 la~~~~~~~~~~~A~~~~~~a~~~~--------p~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~ 523 (701)
+.++|.+.|+..-+..++...-... |. ....+.+|.++...+++.+|...+..|+.. .|.
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 4455666666655555554433221 11 234455566666666777777777666666 554
No 280
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.08 E-value=59 Score=23.64 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=13.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhCCCC
Q 040951 531 LGQLEERLGHLKEAKEAYQSGCNQCPNC 558 (701)
Q Consensus 531 la~~~~~~~~~~~A~~~~~~al~~~p~~ 558 (701)
+|..+...|++++|...|-+|+..+|.-
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 4444444455555555555555555444
No 281
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=42.59 E-value=59 Score=23.64 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 040951 600 LATIRAESKHGNKKEADSFIAKALQKCPNSGILW 633 (701)
Q Consensus 600 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~l~ 633 (701)
..+|..+...|++++|...|.+|+..||.-..+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3467777778888888888888888888654443
No 282
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.63 E-value=4.7e+02 Score=29.71 Aligned_cols=249 Identities=9% Similarity=0.010 Sum_probs=130.8
Q ss_pred HhcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---cH----HHHHHHH
Q 040951 367 KKRGSIETARAIFSHACTVF-LTK----KSIWLKAAQLEKTHGSRESLIALLRKAVTYFP---Q---AE----VLWLMGA 431 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~~a 431 (701)
...|+.++++.++...+... .++ ..+.+.+|.++...+ .++...+...+.... . ++ .+-+.+|
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 56677777777776665421 122 235555665555444 467777777775432 0 12 2344555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCChH
Q 040951 432 KEKWLAGDVPAARDILQEAYATIPNS--EEIWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIVERELGNNA 508 (701)
Q Consensus 432 ~~~~~~g~~~~A~~~l~~a~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~~~~~g~~~ 508 (701)
.++.-.++ +++.+.+...+..+... ..+-+.+|.++...|+-+....++..+.+...+ ..-...++.-....|+.+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 55443443 46677777776643221 124456778888888888888888777654332 121222233344567777
Q ss_pred HHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhCCCCHH--HHHHHHHHHhhhccCCCHHHHH
Q 040951 509 EERGFIEEGLKRFPSFFNL----WLMLGQLEERLGHLKEAKEAYQSGCNQCPNCIP--LWYSLANLEEKRNGLNGLSKAR 582 (701)
Q Consensus 509 ~A~~~~~~al~~~p~~~~~----~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~~~~g~~~~A~ 582 (701)
.+-.+++.... .++ +.+ -+.+|-.|...|+......++..+.....++.. +...+|.+. .|+.+.+.
T Consensus 542 ~~~~li~~L~~-~~d-p~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~-----~g~~e~v~ 614 (963)
T 4ady_A 542 LADDLITKMLA-SDE-SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL-----LRDYTTVP 614 (963)
T ss_dssp GGHHHHHHHHH-CSC-HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-----SSSCSSHH
T ss_pred HHHHHHHHHHh-CCC-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhc-----cCCHHHHH
Confidence 66666555443 332 332 334555667888876666677776643222222 233333332 34444444
Q ss_pred HHHHHHHHhCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 040951 583 AVLSVARLKNPLNPEIWLA----TIRAESKHGNKKEADSFIAKALQKCPNS 629 (701)
Q Consensus 583 ~~~~~a~~~~p~~~~~~~~----l~~~~~~~g~~~~A~~~~~~al~~~p~~ 629 (701)
.++..... -.++.+... +|.+....++ .+++..+.+.. .++++
T Consensus 615 rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~-~D~d~ 661 (963)
T 4ady_A 615 RIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLT-KDPVD 661 (963)
T ss_dssp HHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHH-TCSSH
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHc-cCCCH
Confidence 44433222 234444333 3333322333 56777777764 34443
No 283
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=35.45 E-value=5.1e+02 Score=30.69 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHhCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCCCC
Q 040951 502 RELGNNAEERGFIEEGLKRFPSFFNLWLMLGQLEERLGHLKEAKEAYQSGCNQCPNC 558 (701)
Q Consensus 502 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 558 (701)
...++|..|++++.++++..|. -..+-.+++++..+|--.-+.-.=+-+.-.+|.+
T Consensus 1295 ~~~~~~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~~l~w~h~~~~~~~~~~~~~p~~ 1350 (1354)
T 3lxu_X 1295 YAHGHYGRMYKYVVKLIEEKRT-RDHFVELAAINGALGHEHIRTVINRMMITAFPSS 1350 (1354)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCHHHHHHHHhhhhhhCccc
Confidence 4679999999999999988875 6788888888887775443333222233345543
No 284
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=34.30 E-value=66 Score=24.06 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|++++|+.+|..+++.
T Consensus 30 D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 5677888888877776643
No 285
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.92 E-value=1.9e+02 Score=26.09 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Q 040951 440 VPAARDILQEAYATIPNSEE--------IWLAAFKLEFENRELERARMLLAKARDMGGT-ERVWMKSAIV 500 (701)
Q Consensus 440 ~~~A~~~l~~a~~~~p~~~~--------~~~~la~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~a~~ 500 (701)
.+.|+.+++..-...+-... +....+-++.+.|.|++|.+++++.....++ ...-..+..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555555555544432222 2224455666777777777777777766555 3344444433
No 286
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.21 E-value=70 Score=23.91 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=13.7
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|++++|+.+|..+++.
T Consensus 22 D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 5677888888877776643
No 287
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.19 E-value=96 Score=27.85 Aligned_cols=33 Identities=0% Similarity=-0.172 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhCCCC
Q 040951 492 RVWMKSAIVERELGNNAEERGFIEEGLKRFPSF 524 (701)
Q Consensus 492 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 524 (701)
...+.+|.++...+++.+|...|..|+...|.+
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 344455666666666666666666666665543
No 288
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.75 E-value=2.5e+02 Score=23.99 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=36.3
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhCCCC---HHHHHHHHH------HHHHcCCHHHHHHHHHHHhh
Q 040951 498 AIVERELGNNAEERGFIEEGLKRFPSF---FNLWLMLGQ------LEERLGHLKEAKEAYQSGCN 553 (701)
Q Consensus 498 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~------~~~~~~~~~~A~~~~~~al~ 553 (701)
+..++..|+|-+|-++++.+....+.. ..+|..+++ ...+.|+...|...+.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556688888888888887776543 334444444 24566777777777777765
No 289
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=27.18 E-value=20 Score=27.46 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHhcCCChhhhhhhhhhhccCCCHHHhccCccc
Q 040951 6 EIKNYRYKNPTIREEFVDLKGKLTTVKAKEWERIPEI 42 (701)
Q Consensus 6 ~~~~~~~~~~~~~~~f~~~k~~l~~~~~~~w~~~p~~ 42 (701)
...++..+||.+..+|.|+= +.|-++++.
T Consensus 37 ~R~kik~enP~~s~~~~eIs--------e~Wk~ls~e 65 (90)
T 2yuk_A 37 NFPNLKEEFPDWTTRVKQIA--------KLWRKASSQ 65 (90)
T ss_dssp HCTTHHHHCCSHHHHHHHHH--------HHHHHSCHH
T ss_pred hHHHHHHHCcCccchHHHHH--------HHHHcCCHH
Confidence 34455667777776677664 999999875
No 290
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.74 E-value=2.7e+02 Score=23.83 Aligned_cols=56 Identities=9% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHH------HHHHHcCcHHHHHHHHHHHHh
Q 040951 431 AKEKWLAGDVPAARDILQEAYATIPNS---EEIWLAAF------KLEFENRELERARMLLAKARD 486 (701)
Q Consensus 431 a~~~~~~g~~~~A~~~l~~a~~~~p~~---~~~~~~la------~~~~~~~~~~~A~~~~~~a~~ 486 (701)
+..++..|++=+|-++++.+-...+.. ..+|..++ ......|+..-|..++.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334445577777777777776665443 12222222 233444555555555555544
No 291
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.52 E-value=1.5e+02 Score=30.41 Aligned_cols=62 Identities=5% Similarity=-0.089 Sum_probs=49.2
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhC--------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-CCCC
Q 040951 497 SAIVERELGNNAEERGFIEEGLKRF--------PSF--FNLWLMLGQLEERLGHLKEAKEAYQSGCNQ-CPNC 558 (701)
Q Consensus 497 ~a~~~~~~g~~~~A~~~~~~al~~~--------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 558 (701)
+-.+|++.|+..-+..++...-... |.. ....+.+|.++...+++.+|.+.+..|+.. +|.+
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3567889999988888886543332 221 457889999999999999999999999999 8875
No 292
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.36 E-value=81 Score=23.57 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=7.2
Q ss_pred HhCChHHHHHHHHHH
Q 040951 503 ELGNNAEERGFIEEG 517 (701)
Q Consensus 503 ~~g~~~~A~~~~~~a 517 (701)
..|++.+|+.+|..+
T Consensus 31 ~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 31 KEGNAEEAITNYKKA 45 (83)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 345555555444444
No 293
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.34 E-value=2.8e+02 Score=24.96 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 040951 372 IETARAIFSHACTVFLTKKS--------IWLKAAQLEKTHGSRESLIALLRKAVTYFPQAEVLWLMGAKEKWL 436 (701)
Q Consensus 372 ~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~ 436 (701)
.+.|+.+++.+-+-.|-... +-.....+++..|.+++|.+++++.+..+|.+..+...+..+-..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 46677777666655543222 122334566778888888888888877766666666655555443
No 294
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.31 E-value=86 Score=23.40 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=7.2
Q ss_pred HhCChHHHHHHHHHH
Q 040951 503 ELGNNAEERGFIEEG 517 (701)
Q Consensus 503 ~~g~~~~A~~~~~~a 517 (701)
..|++.+|+.+|..+
T Consensus 23 ~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 23 KEGKVEDAITYYKKA 37 (83)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 345555555544444
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=24.04 E-value=89 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhCCC
Q 040951 531 LGQLEERLGHLKEAKEAYQSGCNQCPN 557 (701)
Q Consensus 531 la~~~~~~~~~~~A~~~~~~al~~~p~ 557 (701)
+|..+...|+++.|...|-+|+..||.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 344444445555555544444444443
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.01 E-value=1.2e+02 Score=23.09 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040951 660 PHVFAAVAKLFWHDRKVDKARNWFNKAVS 688 (701)
Q Consensus 660 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 688 (701)
+......+..+...|+|++|++..++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55667788899999999999988887764
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.66 E-value=1.1e+02 Score=23.57 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 040951 395 KAAQLEKTHGSRESLIALLRKAVTYFPQAE 424 (701)
Q Consensus 395 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 424 (701)
.+|+.+...|+++.+...|-+|+..+|.-.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 445555566666666666666666655433
No 298
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.81 E-value=1.3e+02 Score=22.94 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=11.9
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 040951 367 KKRGSIETARAIFSHACT 384 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~ 384 (701)
...|++++|+.+|..+++
T Consensus 26 D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 456777777777766654
No 299
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.38 E-value=72 Score=23.54 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 040951 663 FAAVAKLFWHDRKVDKARNWFNKAVSL 689 (701)
Q Consensus 663 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 689 (701)
...+|+=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456888899999999999999998863
No 300
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=21.14 E-value=1.5e+02 Score=22.03 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=13.5
Q ss_pred HhcCCHHHHHHHHHHHHHh
Q 040951 367 KKRGSIETARAIFSHACTV 385 (701)
Q Consensus 367 ~~~~~~~~A~~~~~~al~~ 385 (701)
...|++++|+.+|..+++.
T Consensus 24 D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5567888888877776653
No 301
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.03 E-value=2.4e+02 Score=21.48 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=7.8
Q ss_pred HhCChHHHHHHHHHHHH
Q 040951 503 ELGNNAEERGFIEEGLK 519 (701)
Q Consensus 503 ~~g~~~~A~~~~~~al~ 519 (701)
..|+. |..++.+++.
T Consensus 53 ~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 53 RLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCC--CHHHHHHHHH
T ss_pred HcCcH--HHHHHHHHHH
Confidence 44554 5555555544
Done!