Your job contains 1 sequence.
>040956
MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLE
IRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSS
TVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMH
RVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPS
KIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELY
ELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAK
ARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAAL
RVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA
VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL
RNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL
MKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG
LRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVT
DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP
AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST
LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ
KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV
TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA
LAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS
YQLHN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040956
(1085 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 1924 0. 2
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 2727 2.8e-286 2
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 614 2.3e-108 5
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 612 3.4e-106 5
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 643 5.9e-106 3
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 643 6.6e-106 3
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 618 4.0e-105 4
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 602 8.3e-105 4
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 552 3.3e-104 4
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 619 5.8e-104 4
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 615 1.4e-103 4
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 619 1.7e-103 3
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 619 1.8e-103 4
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 622 2.1e-103 3
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 605 2.1e-102 4
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 613 2.7e-102 3
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 492 1.8e-100 3
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 569 5.4e-100 4
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 478 1.7e-98 4
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 505 5.3e-97 4
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 505 5.3e-97 4
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 504 1.5e-92 3
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 553 7.3e-92 3
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 502 1.5e-91 4
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 577 3.2e-90 3
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 518 8.7e-87 4
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 518 8.7e-87 4
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 494 1.4e-86 3
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 515 3.4e-86 4
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 432 1.1e-64 3
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 439 1.1e-62 2
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 545 1.8e-62 4
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 412 1.2e-59 4
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 481 1.3e-59 3
UNIPROTKB|Q23AD6 - symbol:TTHERM_00426230 "MutS domain II... 347 1.7e-58 4
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 476 7.6e-58 4
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 453 1.1e-57 3
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 431 1.3e-57 2
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 434 1.3e-57 3
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 434 1.3e-57 3
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 459 4.0e-57 3
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 439 7.0e-57 3
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 402 1.5e-56 3
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 427 2.0e-56 2
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 439 5.8e-56 3
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 415 2.6e-55 3
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 422 3.4e-55 3
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 442 1.2e-54 3
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 410 1.2e-54 3
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 417 1.5e-54 4
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 498 1.6e-54 2
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 498 1.6e-54 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 432 2.3e-54 4
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 475 3.7e-54 2
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 453 4.0e-54 4
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 427 7.3e-54 4
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 450 3.2e-53 4
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 450 3.2e-53 4
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 471 3.9e-53 3
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 468 5.9e-53 3
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 441 1.5e-52 2
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 375 1.6e-52 4
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 459 3.9e-52 3
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 417 9.8e-52 3
UNIPROTKB|I3LUG7 - symbol:LOC100624532 "Uncharacterized p... 382 2.3e-51 4
UNIPROTKB|Q7SD11 - symbol:msh-3 "DNA mismatch repair prot... 378 4.0e-51 4
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 411 7.6e-51 3
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 463 1.0e-50 3
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 458 2.6e-50 2
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 461 4.8e-50 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 461 5.0e-50 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 403 8.7e-50 3
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 459 8.7e-49 2
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 459 9.5e-49 2
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 437 1.3e-48 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 361 3.0e-48 4
UNIPROTKB|F1RF09 - symbol:MSH3 "Uncharacterized protein" ... 367 2.7e-47 3
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 452 5.2e-47 2
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 448 8.7e-47 2
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 463 8.8e-47 3
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 447 8.9e-47 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 444 9.3e-47 2
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 447 2.1e-46 2
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 446 4.0e-46 3
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 433 1.5e-45 3
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 390 1.8e-44 3
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 441 2.7e-44 2
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 410 3.8e-44 2
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 396 1.7e-43 3
UNIPROTKB|Q5B374 - symbol:AN5006.2 "Putative uncharacteri... 441 2.4e-43 2
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 413 6.6e-43 4
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 395 7.0e-43 3
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 367 1.0e-42 4
SGD|S000001162 - symbol:MSH1 "DNA-binding protein involve... 391 1.5e-42 3
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 428 1.6e-42 2
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 417 3.1e-42 2
ZFIN|ZDB-GENE-060526-307 - symbol:msh3 "mutS homolog 3 (E... 304 4.2e-42 3
UNIPROTKB|B1N4L6 - symbol:EHI_123830 "DNA mismatch repair... 414 4.6e-42 2
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 376 7.4e-42 3
RGD|1563954 - symbol:Msh3 "mutS homolog 3 (E. coli)" spec... 448 3.5e-41 1
WARNING: Descriptions of 85 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 1924 (682.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 370/525 (70%), Positives = 438/525 (83%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
YLD+CV+ +GKRLLR+WICHPLKDVE IN RLDVVE NSE + + QYL KLPDLER
Sbjct: 581 YLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLER 640
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
LLGR+K+ V++S+ ++ L+GKKVLKQ+VK FG +VKG R +DLL+ + KE +++ L
Sbjct: 641 LLGRIKSSVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLY 700
Query: 683 RIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWS 742
++ K PI G GL+ FL+QFEAAIDSDFP+YQN DVTD +AETL+ILIELFIE+A+QWS
Sbjct: 701 KLCKLPILVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWS 760
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
EVIH ISC+DVLRSFA+ AS+S+G+M RP+I P+S+ Q GP+LKI+GLWHPFA+
Sbjct: 761 EVIHTISCLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAV 820
Query: 803 GENGGLPVPNDILLGE---DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
+G LPVPNDILLGE S PR+LLLTGPNMGGKSTLLRATCLAVI AQLGC+VP
Sbjct: 821 AADGQLPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVP 880
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
CE C +SL DTIFTRLGA+DRIMTGESTFLVECTETASVLQ ATQDSLVILDELGRGTST
Sbjct: 881 CESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTST 940
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
FDGYAIAY+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+ +G
Sbjct: 941 FDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRG 1000
Query: 980 -DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRS 1038
DQ+LVFLYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RS
Sbjct: 1001 CDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRS 1060
Query: 1039 EFSSLHEEWLKTIVNVSRVDCNSDD--DDAYDTLFCLWHELKNSY 1081
EFSSLHE+WLK++V +SRV N+ +D YDTLFCLWHE+K+SY
Sbjct: 1061 EFSSLHEDWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
Score = 1593 (565.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 326/571 (57%), Positives = 411/571 (71%)
Query: 1 MQRQQSIHSFFQKCSPANKSG-----AADMSGARKDSNFTTKQRNPVGDSSGQPTVSATE 55
MQRQ+SI SFFQK + A G AA G F K+ + GD+S + VS +
Sbjct: 1 MQRQRSILSFFQKPTAATTKGLVSGDAASGGGGSGGPRFNVKEGDAKGDASVRFAVSKSV 60
Query: 56 DSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQ 115
D E+RGTDTPPEKVPR++LPSGFK E SSLFS+IMHKFVKVD R + +R+ +
Sbjct: 61 D---EVRGTDTPPEKVPRRVLPSGFKPAESAGDASSLFSNIMHKFVKVDDRDCSGERSRE 117
Query: 116 HG---NSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVS 172
N S++C K D+ + E+++ F+ +G A V ++ DV
Sbjct: 118 DVVPLNDSSLCM---KANDVIPQFRSNNGKT-QERNHAFSFSGRAELRSVEDIGVDGDVP 173
Query: 173 GPDTPGMHRVVPRLKRILEDNLNIGXXXXXXXXXXXXRMRLLQDSVAGVKNCEEEADTTS 232
GP+TPGM RLKR+LED + R+++LQD V G K +E + +
Sbjct: 174 GPETPGMRPRASRLKRVLEDEMTF-KEDKVPVLDSNKRLKMLQDPVCGEK---KEVNEGT 229
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KFEWL+ S+IRDANRRRPDDPLYD++TL+IPP+ KKMSASQKQYW+VKS+YMD++LFFK
Sbjct: 230 KFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLFFK 289
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELYELDAE+GHKELDWK+T+SGVGKCRQVGISESGID+AV+KL+ARGYKVGRIEQ
Sbjct: 290 VGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRIEQ 349
Query: 353 LETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGF 412
LETS+QAKAR N++I RKLV V+TPST +G IGPDAVHLLAIKE S VYGF
Sbjct: 350 LETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELQKCSTVYGF 409
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AGSA 471
AFVDCAALR WVG+I+DDASCAALGALLMQVSPKEV+Y+++GL +EAQKALRK++ GS
Sbjct: 410 AFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTGST 469
Query: 472 ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL 531
A++L P V DA+ V+ +++ NGYF GSS W+ A++ + + D+ SALG LI+HL
Sbjct: 470 AVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALGELINHL 529
Query: 532 SRLMLDDVLRNGDILPYKVYRDCLRMDGQTL 562
SRL L+DVL++GDI PY+VYR CLR+DGQT+
Sbjct: 530 SRLKLEDVLKHGDIFPYQVYRGCLRIDGQTM 560
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 2727 (965.0 bits), Expect = 2.8e-286, Sum P(2) = 2.8e-286
Identities = 548/932 (58%), Positives = 687/932 (73%)
Query: 174 PDTPGMHRVVPRLKRILEDNLNIGXXXXXXXXXXXXRMRLLQDSVAGVKNCEEEADTT-S 232
P+TP M V+PRLKR+ ED +++ Q S K +E A++ S
Sbjct: 306 PETPVMRAVIPRLKRVQEDQRVTTNDSCSPFWGPNKKVKPAQCSPVENKVHDEMAESARS 365
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KFEWL+PS IRDANRRR DPLYDK TL+IPP+AL+KMS SQKQYWN+K +YMDV+LFFK
Sbjct: 366 KFEWLNPSNIRDANRRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNIKCKYMDVVLFFK 425
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELYE+DAEIG KELDWK+T+SGVGKCRQVGISESGID AVEKL+ARGYKVGRIEQ
Sbjct: 426 VGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDVAVEKLLARGYKVGRIEQ 485
Query: 353 LETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGF 412
+E+++QAK+R +NSVI RKLV+V TPST D IG DAVHLL++KE NGS VYGF
Sbjct: 486 MESADQAKSRGSNSVILRKLVHVSTPSTVGDSNIGADAVHLLSLKEITLA-SNGSRVYGF 544
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF-SAGSA 471
AF+D AAL++WVG+++DD + AALGALL+QVSPKE+IYE GL KE + ++K+ SAGS
Sbjct: 545 AFLDYAALKIWVGSVHDDDTFAALGALLVQVSPKEIIYETSGLSKETHRLIKKYASAGSV 604
Query: 472 ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL 531
++LTP + F D SE++ L+ GYF S+S W AL + + D ALGGL+SHL
Sbjct: 605 KMQLTPLYGLY-FSDVSEIQTLIDSRGYFKASTSSWLSALNSSVNKDAVICALGGLVSHL 663
Query: 532 SRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSS 571
+RLML+D L+NG++L Y VYR CLRMDGQTL +L+ C+T
Sbjct: 664 TRLMLEDALKNGEVLAYHVYRTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCITPC 723
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
GKRLLR WICHPLKD++ IN RLD+VE ++N + V ++LRK+PDLERLLGRVK+ V
Sbjct: 724 GKRLLRRWICHPLKDIDAINERLDIVEGFIQNCGLGSVTLEHLRKVPDLERLLGRVKSTV 783
Query: 632 QASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFD 691
SS ++LP +G+K+LK+++K FG LVKGLR+ +DLL ++ ++ H I +LS+ P
Sbjct: 784 GLSSAVLLPFVGEKILKRRIKTFGMLVKGLRVGIDLLDILQRQDHGISALSKAVDIPTLS 843
Query: 692 GSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCI 751
L + + FE AID DFP YQ+H V D DA TL++L++L + KAS+WS VI+A+S I
Sbjct: 844 S---LGELIHHFEEAIDDDFPRYQDHSVKDDDANTLAMLVDLLVGKASEWSLVINALSTI 900
Query: 752 DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-GGLPV 810
DVLRSFA A S G RP IL + K PVL++KGLWHP+A E+ GL V
Sbjct: 901 DVLRSFAAMALSSFGTTCRPNILLKGK---------APVLQMKGLWHPYAFAESVNGL-V 950
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PND+ LG++ LLLTGPNMGGKST++RATCLA++LAQLGC+VPC+ C L+LAD
Sbjct: 951 PNDLSLGQNLSGQNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCQSCELTLADA 1010
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
IFTR+GA DRIM+GESTFLVECTETAS+L+ AT+DSLV+LDELGRGTSTFDGYAIAYAVF
Sbjct: 1011 IFTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDELGRGTSTFDGYAIAYAVF 1070
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
R LVE + CRLLFATHYHPLTKEFASHPHVTLQHMAC K + G++EL FLYRLT
Sbjct: 1071 RHLVEAVRCRLLFATHYHPLTKEFASHPHVTLQHMACMLKPRNGG-DGGEKELTFLYRLT 1129
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKT 1050
SGACPESYGLQVA MAG+P+ +VE AS A M+ I +F+SSE+R+EFS+LHEEW++T
Sbjct: 1130 SGACPESYGLQVATMAGLPRSIVERASAAGEMMRSKIAGNFRSSEERAEFSTLHEEWVRT 1189
Query: 1051 IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
IV + V D+D DTLFC++HELK ++
Sbjct: 1190 IVAIGGVKDAHLDEDTMDTLFCVFHELKAHFR 1221
Score = 47 (21.6 bits), Expect = 2.8e-286, Sum P(2) = 2.8e-286
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 2 QRQQSIHSFFQKCSPANKSG 21
Q+QQSI SF QK PA +G
Sbjct: 8 QQQQSILSFLQK-KPAAAAG 26
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 614 (221.2 bits), Expect = 2.3e-108, Sum P(5) = 2.3e-108
Identities = 160/441 (36%), Positives = 245/441 (55%)
Query: 644 KKVLKQQVKVFGSL-VKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQ 702
KK LK+Q K+ G + + + D +L E + S+ ++ + G+ ++ T
Sbjct: 906 KKHLKEQRKLLGDASINYVTVGKDEYLLEVPES-LSGSVPHDYE--LCSSKKGVSRYWTP 962
Query: 703 FEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTAS 762
+ + ++ + L + + LI F E +W +++ A + +DVL S A +
Sbjct: 963 TIKKLLKELSQAKSEKESALKSISQR-LIGRFCEHQEKWRQLVSATAELDVLISLAFASD 1021
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-G-GLPVPNDILLGEDS 820
G RP+I + + G P L GL HP G++ G G VPN++ +G
Sbjct: 1022 SYEGVRCRPVISGSTSD-------GVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAE 1074
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
+LLTGPNMGGKSTLLR CLAVILAQ+G VP E +S D I R+GA D
Sbjct: 1075 KASF---ILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDH 1131
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940
IM G+STFL E +ETA +L AT++SLV+LDELGRGT+T DG AIA +V +E++ CR
Sbjct: 1132 IMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCR 1191
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
F+THYH L+ ++ ++P V+L HMAC E G +E+ FLYRLT GACP+SYG+
Sbjct: 1192 GFFSTHYHRLSVDYQTNPKVSLCHMACQI---GEGIG-GVEEVTFLYRLTPGACPKSYGV 1247
Query: 1001 QVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCN 1060
VA +AG+P V++ A + + G++ + ++ + +++ +K I+ S V +
Sbjct: 1248 NVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDHK--LAAM----IKQII--SSVASD 1299
Query: 1061 SDDDDAYDTLFCLWHELKNSY 1081
SD + D+L C H + N++
Sbjct: 1300 SDYSASKDSL-CELHSMANTF 1319
Score = 427 (155.4 bits), Expect = 2.3e-108, Sum P(5) = 2.3e-108
Identities = 103/287 (35%), Positives = 158/287 (55%)
Query: 214 LQDSVA-GVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSA 272
L+D+V G A + KF +L + RDA RRRP D YD RTLY+PP+ +KK++
Sbjct: 323 LEDNVLDGDALARFGARDSEKFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVKKLTG 381
Query: 273 SQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESG 332
Q+Q+W K+++MD ++FFK+GKFYEL+E+DA +G KELD + C G E
Sbjct: 382 GQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHC---GFPEKN 438
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARH--TNS---VISRKLVNVVTPSTTVDGTI- 386
+EKLV +GY+V +EQ ET +Q + R T S V+ R++ VVT T DG +
Sbjct: 439 FSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDGEML 498
Query: 387 --GPDAVHLLAIKEGNCGPDNGSVVYGFA--FVDCAALRVWVGTINDDASCAALGALLMQ 442
PDA +L+A+ EG N + + F VD A ++ +G DD C+AL LL +
Sbjct: 499 LTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQFKDDQDCSALSCLLSE 558
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASE 489
+ P E+I + L ++ + + + L P +++F D+ +
Sbjct: 559 MRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVP---LSEFWDSEK 602
Score = 151 (58.2 bits), Expect = 2.3e-108, Sum P(5) = 2.3e-108
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLRKL 617
TLY L+ C+T+SGKRLL++W+ PL + E I R D V L +N + + L +L
Sbjct: 720 TLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSRL 779
Query: 618 PDLERLLGRVKARVQASSCIVLPLI-GKKVLKQQVKVFGSLVKG 660
PD+ERL+ R+ + ++AS ++ + K+QV+ F S ++G
Sbjct: 780 PDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRG 823
Score = 49 (22.3 bits), Expect = 2.3e-108, Sum P(5) = 2.3e-108
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 519 IGFSALGGLISHLSRLMLDD-VLRNG--DILPY 548
+ SALGG I +L + LD+ +LR + LPY
Sbjct: 652 LALSALGGAIYYLRQAFLDESLLRFAKFESLPY 684
Score = 49 (22.3 bits), Expect = 2.3e-108, Sum P(5) = 2.3e-108
Identities = 27/103 (26%), Positives = 40/103 (38%)
Query: 1 MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLE 60
+ +Q+ I SFF K + ++ S + S + + T K NP S P+ S
Sbjct: 15 VNQQRQITSFFGKSASSSSSPSPSPSPSLSNKK-TPKSNNP-NPKSPSPSPS-------- 64
Query: 61 IRGTDTPPEKVPR-QILPSGFKANEGTSGGSSLFSSIMHKFVK 102
PP+K P+ PS S G S + KF K
Sbjct: 65 ------PPKKTPKLNPNPSSNLPARSPSPGPDTPSPVQSKFKK 101
Score = 42 (19.8 bits), Expect = 1.2e-107, Sum P(5) = 1.2e-107
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 32 SNFTTKQRNPVGDSSGQPTVSATEDSSLEIRGTDTPPEKV 71
SN + +P G + P S + L I T +PP+ V
Sbjct: 78 SNLPARSPSP-GPDTPSPVQSKFKKPLLVIGQTPSPPQSV 116
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 612 (220.5 bits), Expect = 3.4e-106, Sum P(5) = 3.4e-106
Identities = 130/291 (44%), Positives = 185/291 (63%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + + +DVL A + G M RP++L P ++ P L++
Sbjct: 1040 FDKNHKDWQSAVECTAVLDVLLCLASYSQGGDGPMCRPVLLL----PG---EDTHPFLEL 1092
Query: 794 KGLWHPFALGENGGLP-VPNDILLG--EDSD-DCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G ED++ D +L+TGPNMGGKSTL+R L
Sbjct: 1093 KGSRHPCITKTFFGDDFIPNDILIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAGLLA 1152
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1153 VMAQMGCYVPAELCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVL 1212
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1213 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGHMACMV 1272
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A
Sbjct: 1273 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKA 1321
Score = 397 (144.8 bits), Expect = 3.4e-106, Sum P(5) = 3.4e-106
Identities = 99/283 (34%), Positives = 146/283 (51%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL P K RD NRRRPD P Y+ TLY+P + L + +++W KSQ D+++F+KVG
Sbjct: 373 EWLKPEKRRDENRRRPDHPDYNSSTLYVPEDFLNSCTPGMRRWWQFKSQNFDLVIFYKVG 432
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA IG EL I + G G E + LV +GYKV R+EQ E
Sbjct: 433 KFYELYHMDAVIGVSELGL-IFMKG--NWAHSGFPEIAFGRFSDSLVQKGYKVARVEQTE 489
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPST----TVDGTIGPD-AVHLLAIKEGNC 401
T E +AR H + V+ R++ ++T T +DG + + +LL++KE
Sbjct: 490 TPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKEE 549
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
YG FVD + + ++G +DD C+ L L+ P ++++E L E +
Sbjct: 550 DSSGHMRAYGVCFVDTSLGKFFLGQFSDDRHCSRLRTLVAHYPPVQILFEKGNLSTETKT 609
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
L K S S E L P + F DA++ + + GYF G+
Sbjct: 610 VL-KGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGN 648
Score = 164 (62.8 bits), Expect = 3.4e-106, Sum P(5) = 3.4e-106
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD+C T GKRLL+ W+C PL I++RLD +E LM + V VA L+KLPDLERL
Sbjct: 762 LDTCHTPFGKRLLKQWLCAPLCSPSAISDRLDAIEDLMAVPDKVAEVADLLKKLPDLERL 821
Query: 624 LGRV 627
L ++
Sbjct: 822 LSKI 825
Score = 136 (52.9 bits), Expect = 5.1e-79, Sum P(5) = 5.1e-79
Identities = 45/165 (27%), Positives = 77/165 (46%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE YG FVD + + ++G +DD C+ L L+ P ++++E
Sbjct: 540 YLLSLKEKEEDSSGHMRAYGVCFVDTSLGKFFLGQFSDDRHCSRLRTLVAHYPPVQILFE 599
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSS----- 505
L E + L K S S E L P + F DA++ + + GYF G+
Sbjct: 600 KGNLSTETKTVL-KGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNEGSGAEL 655
Query: 506 -PWSKAL----ENV-----MQHDIGFSALGGLISHLSRLMLDDVL 540
P KA+ ++V + ++ SALGG + +L + ++D L
Sbjct: 656 PPVLKAMTSESDSVGLTPGEESELSLSALGGCVFYLKKCLIDQEL 700
Score = 55 (24.4 bits), Expect = 3.4e-106, Sum P(5) = 3.4e-106
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 1 MQRQQSIHSFFQKCSPA---NKSGAADMS--GARKDSNFTTKQRNPVGDSSGQPTVSATE 55
M RQ +++SFF K SPA K AA S GA ++ R+ +G + A
Sbjct: 1 MSRQSTLYSFFPK-SPALGDTKEAAARASRKGAAASGASASRGRDAAWSEAGPGSRPAAL 59
Query: 56 DSSL 59
+SL
Sbjct: 60 STSL 63
Score = 43 (20.2 bits), Expect = 3.4e-106, Sum P(5) = 3.4e-106
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 87 SGGSSLFSSIMHKFVKVDARQNANKRNEQHG--NSSTV 122
S G +++ +++K + R++ N+R H NSST+
Sbjct: 361 SSGPTIWYHETLEWLKPEKRRDENRRRPDHPDYNSSTL 398
Score = 42 (19.8 bits), Expect = 2.9e-56, Sum P(4) = 2.9e-56
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
+L+++++ R+ VI +KL N++ D ++
Sbjct: 995 ELKSTKKGCKRYWTKVIEKKLSNLINAEERRDASL 1029
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 643 (231.4 bits), Expect = 5.9e-106, Sum P(3) = 5.9e-106
Identities = 140/309 (45%), Positives = 194/309 (62%)
Query: 723 DAETLSILIELF--IEKASQ-WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
DA + LF +K SQ W + I+ +DVL S A + G + RP+IL
Sbjct: 1007 DAALKDCMRRLFYNFDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILL---- 1062
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDD--CLPRTLLLTGPNMG 836
P D+ P L++K HP G +PNDI++G +D +L+TGPNMG
Sbjct: 1063 PV---DSAPPFLELKNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMG 1119
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKSTL+R L VI+AQLGC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ET+
Sbjct: 1120 GKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETS 1179
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
S+LQ AT+ SLV++DELGRGT+TFDG AIA AV R+L E I CR LF+THYH L ++++
Sbjct: 1180 SILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSG 1239
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
V L HMAC ++ SE+ S+ + + FLY+ GACP+SYG A +A +P+++++
Sbjct: 1240 SAAVRLGHMACMVENESEDPSQ--ETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKG 1297
Query: 1017 SHAALAMKK 1025
A +K
Sbjct: 1298 HRKAKEFEK 1306
Score = 372 (136.0 bits), Expect = 5.9e-106, Sum P(3) = 5.9e-106
Identities = 97/281 (34%), Positives = 143/281 (50%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DA+RRR + P YD TLY+P + L K + +++W +KSQ D ++ +K
Sbjct: 352 KLEWLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYK 411
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA G EL I + G G E+ LV +GYK+ R+EQ
Sbjct: 412 VGKFYELYHMDAVTGVNELGL-IFMKG--SWAHSGFPETAFGRFSAILVQKGYKIARVEQ 468
Query: 353 LETSEQAKAR-----HT---NSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEG 399
ET E +AR HT + V+ R++ ++T T I D +LL +KE
Sbjct: 469 TETPEMMEARCKATAHTTKFDKVVRREICRIITKGTQTYSIIDCDPTENHNKYLLCVKEK 528
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+G VYG FVD + + +VG +DD C+ L+ +P +V++E L +
Sbjct: 529 E--DSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDT 586
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
QK L K S S E ++ + F AS+ K++ YF
Sbjct: 587 QKIL-KGSLISCIQE--GLISGSQFWSASKTLKVLLEEEYF 624
Score = 165 (63.1 bits), Expect = 5.9e-106, Sum P(3) = 5.9e-106
Identities = 40/97 (41%), Positives = 58/97 (59%)
Query: 533 RLMLDDV-LRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGI 590
R++LD V L N ++L +G L +DSC T GKRLL+ W+C PL + I
Sbjct: 713 RMVLDGVTLMNLEVLQNGTNGTT---EGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSI 769
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
N+RLD VE L+ + + ++L+KLPDLERLL ++
Sbjct: 770 NDRLDAVEDLLAVPAKLTEITEHLKKLPDLERLLSKI 806
Score = 113 (44.8 bits), Expect = 9.6e-79, Sum P(3) = 9.6e-79
Identities = 41/163 (25%), Positives = 70/163 (42%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL +KE +G VYG FVD + + +VG +DD C+ L+ +P +V++E
Sbjct: 521 YLLCVKEKE--DSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFE 578
Query: 452 NRGLCKEAQKALRK---------FSAGS----AALELTPAMAVTDFLDASEVKKLVQLNG 498
L + QK L+ +GS A+ L + F + + L
Sbjct: 579 KGNLTVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVLPS 638
Query: 499 YFNG-SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
+S S L ++ SALGG++ +L + ++D L
Sbjct: 639 VIKSLTSESDSLGLTPGENSELALSALGGIVFYLKKCLIDQEL 681
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 643 (231.4 bits), Expect = 6.6e-106, Sum P(3) = 6.6e-106
Identities = 140/309 (45%), Positives = 194/309 (62%)
Query: 723 DAETLSILIELF--IEKASQ-WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
DA + LF +K SQ W + I+ +DVL S A + G + RP+IL
Sbjct: 1023 DAALKDCMRRLFYNFDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILL---- 1078
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDD--CLPRTLLLTGPNMG 836
P D+ P L++K HP G +PNDI++G +D +L+TGPNMG
Sbjct: 1079 PV---DSAPPFLELKNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMG 1135
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKSTL+R L VI+AQLGC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ET+
Sbjct: 1136 GKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETS 1195
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
S+LQ AT+ SLV++DELGRGT+TFDG AIA AV R+L E I CR LF+THYH L ++++
Sbjct: 1196 SILQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSG 1255
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
V L HMAC ++ SE+ S+ + + FLY+ GACP+SYG A +A +P+++++
Sbjct: 1256 SAAVRLGHMACMVENESEDPSQ--ETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKG 1313
Query: 1017 SHAALAMKK 1025
A +K
Sbjct: 1314 HRKAKEFEK 1322
Score = 372 (136.0 bits), Expect = 6.6e-106, Sum P(3) = 6.6e-106
Identities = 97/281 (34%), Positives = 143/281 (50%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DA+RRR + P YD TLY+P + L K + +++W +KSQ D ++ +K
Sbjct: 368 KLEWLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYK 427
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA G EL I + G G E+ LV +GYK+ R+EQ
Sbjct: 428 VGKFYELYHMDAVTGVNELGL-IFMKG--SWAHSGFPETAFGRFSAILVQKGYKIARVEQ 484
Query: 353 LETSEQAKAR-----HT---NSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEG 399
ET E +AR HT + V+ R++ ++T T I D +LL +KE
Sbjct: 485 TETPEMMEARCKATAHTTKFDKVVRREICRIITKGTQTYSIIDCDPTENHNKYLLCVKEK 544
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+G VYG FVD + + +VG +DD C+ L+ +P +V++E L +
Sbjct: 545 E--DSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDT 602
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
QK L K S S E ++ + F AS+ K++ YF
Sbjct: 603 QKIL-KGSLISCIQE--GLISGSQFWSASKTLKVLLEEEYF 640
Score = 165 (63.1 bits), Expect = 6.6e-106, Sum P(3) = 6.6e-106
Identities = 40/97 (41%), Positives = 58/97 (59%)
Query: 533 RLMLDDV-LRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGI 590
R++LD V L N ++L +G L +DSC T GKRLL+ W+C PL + I
Sbjct: 729 RMVLDGVTLMNLEVLQNGTNGTT---EGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSI 785
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
N+RLD VE L+ + + ++L+KLPDLERLL ++
Sbjct: 786 NDRLDAVEDLLAVPAKLTEITEHLKKLPDLERLLSKI 822
Score = 113 (44.8 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 41/163 (25%), Positives = 70/163 (42%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL +KE +G VYG FVD + + +VG +DD C+ L+ +P +V++E
Sbjct: 537 YLLCVKEKE--DSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFE 594
Query: 452 NRGLCKEAQKALRK---------FSAGS----AALELTPAMAVTDFLDASEVKKLVQLNG 498
L + QK L+ +GS A+ L + F + + L
Sbjct: 595 KGNLTVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVLPS 654
Query: 499 YFNG-SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
+S S L ++ SALGG++ +L + ++D L
Sbjct: 655 VIKSLTSESDSLGLTPGENSELALSALGGIVFYLKKCLIDQEL 697
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 618 (222.6 bits), Expect = 4.0e-105, Sum P(4) = 4.0e-105
Identities = 132/297 (44%), Positives = 184/297 (61%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL + G M RP+IL P+ P P L
Sbjct: 1039 FDKNYKDWQAAVECIAVLDVLLCLTNYSRGGDGPMCRPIILLPEEDTP--------PFLD 1090
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1091 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1150
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1151 AIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1210
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1211 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1270
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1271 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 382 (139.5 bits), Expect = 4.0e-105, Sum P(4) = 4.0e-105
Identities = 91/279 (32%), Positives = 142/279 (50%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KVG
Sbjct: 370 EWLKEEKRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVG 429
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYE+Y +DA IG EL + + G G E + LV +GYKV R+EQ E
Sbjct: 430 KFYEMYHMDALIGVSELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 486
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 TPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEE 546
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ VYG FVD + R ++G +DD C+ L+ P +V++E L + +
Sbjct: 547 ESSGHTRVYGVCFVDTSLGRFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSMDTKM 606
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
L+ + S L P + F DA++ + + GYF
Sbjct: 607 ILKSSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEGYF 642
Score = 162 (62.1 bits), Expect = 4.0e-105, Sum P(4) = 4.0e-105
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL + IN+RLD +E LM + + V L+KLPDLERL
Sbjct: 761 IDTCHTPFGKRLLKQWLCAPLCNPHAINDRLDAIEDLMVVPDKISEVVDLLKKLPDLERL 820
Query: 624 LGRV 627
L ++
Sbjct: 821 LSKI 824
Score = 116 (45.9 bits), Expect = 2.7e-77, Sum P(4) = 2.7e-77
Identities = 41/163 (25%), Positives = 68/163 (41%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + VYG FVD + R ++G +DD C+ L+ P +V++E
Sbjct: 537 YLLSLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 596
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTD-------------FLDASEVKKLVQLNG 498
L + + L+ + S L P D F+D V L
Sbjct: 597 KGNLSMDTKMILKSSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFIDKLNEDGGVMLPQ 656
Query: 499 YFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 657 VLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQEL 699
Score = 57 (25.1 bits), Expect = 4.0e-105, Sum P(4) = 4.0e-105
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 1 MQRQQSIHSFFQKCSPA----NKSGAADMSGARKDSNFTTKQRNPVGDSS 46
M RQ ++ SFF K SPA NK+ SG+ + T +P GD++
Sbjct: 1 MSRQSTLFSFFPK-SPAVNNANKAPVRASSGSSAAAAATGASPSPGGDAA 49
Score = 48 (22.0 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 299 LYELDAEIGHKELDWKITLSGVGK-CRQVGISESGIDDAVEKLV 341
+YE K +D+ L G C+ +GI E IDD K++
Sbjct: 843 MYEETTYSKKKIIDFLSALEGFKVICKIIGIMEEVIDDFKSKIL 886
Score = 37 (18.1 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
+L+++++ R+ I +KL N++ D ++
Sbjct: 994 ELKSTKKGCKRYWTKTIEKKLGNLINAEERRDASL 1028
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 602 (217.0 bits), Expect = 8.3e-105, Sum P(4) = 8.3e-105
Identities = 130/292 (44%), Positives = 183/292 (62%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP ++LP ++ P L+
Sbjct: 1037 FDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPG--------EDTHPFLE 1088
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG--EDSDDC-LPRTLLLTGPNMGGKSTLLRATCLA 848
KG HP G +PNDIL+G E++++ +L+TGPNMGGKSTL+R L
Sbjct: 1089 FKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLL 1148
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQLGC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV
Sbjct: 1149 AVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLV 1208
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC
Sbjct: 1209 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACM 1268
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A
Sbjct: 1269 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKA 1318
Score = 398 (145.2 bits), Expect = 8.3e-105, Sum P(4) = 8.3e-105
Identities = 101/287 (35%), Positives = 150/287 (52%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL P K RD +RRRPD P ++ TLY+P E L + +++W +KSQ D+++F+KVG
Sbjct: 370 EWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKVG 429
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA IG EL I + G G E + LV +GYKV R+EQ E
Sbjct: 430 KFYELYHMDAVIGVSELGL-IFMKG--NWAHSGFPEIAFGRFSDSLVQKGYKVARVEQTE 486
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPST----TVDGTIGPD-AVHLLAIKEGNC 401
T E +AR H + V+ R++ ++T T +DG + + +LL++KE
Sbjct: 487 TPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKEE 546
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ VYG FVD + + ++G +DD C+ L+ P ++++E L E +
Sbjct: 547 ETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETKT 606
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF--NGSSS 505
L K S S E L P + F DA++ + + GYF NG SS
Sbjct: 607 VL-KGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNGDSS 649
Score = 165 (63.1 bits), Expect = 8.3e-105, Sum P(4) = 8.3e-105
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD+C T GKRLL+ W+C PL I++RLD VE LM + V VA L+KLPDLERL
Sbjct: 759 LDTCHTPFGKRLLKQWLCAPLCSPSAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERL 818
Query: 624 LGRV 627
L ++
Sbjct: 819 LSKI 822
Score = 140 (54.3 bits), Expect = 8.1e-78, Sum P(4) = 8.1e-78
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + VYG FVD + + ++G +DD C+ L+ P ++++E
Sbjct: 537 YLLSLKEKEEETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFE 596
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF--NGSSS--- 505
L E + L K S S E L P + F DA++ + + GYF NG SS
Sbjct: 597 KGNLSTETKTVL-KGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNGDSSTVL 652
Query: 506 PW----------SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
P S L + ++ SALGG++ +L + ++D L
Sbjct: 653 PLVLKGMTSESDSVGLTPGEESELALSALGGIVFYLKKCLIDQEL 697
Score = 53 (23.7 bits), Expect = 8.3e-105, Sum P(4) = 8.3e-105
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 1 MQRQQSIHSFFQKCSPA---NKSGAADMS--GARKDSNFTTKQRNPVGDSSGQP-----T 50
M RQ +++SFF K SPA K AA+ S GA S + + S +P
Sbjct: 1 MSRQSTLYSFFPK-SPALGDTKKAAAEASRQGAAA-SGASASRGGDAAWSEAEPGSRSAA 58
Query: 51 VSATEDSSLEIRG 63
VSA+ + ++ G
Sbjct: 59 VSASSPEAKDLNG 71
Score = 38 (18.4 bits), Expect = 2.3e-54, Sum P(3) = 2.3e-54
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
+L+++++ R+ I +KL N++ D ++
Sbjct: 992 ELKSTKKGCKRYWTKTIEKKLANLINAEERRDTSL 1026
Score = 37 (18.1 bits), Expect = 2.9e-54, Sum P(3) = 2.9e-54
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 212 RLLQDSVAGVKNCEEEADTTSK 233
+ ++ +A + N EE DT+ K
Sbjct: 1006 KTIEKKLANLINAEERRDTSLK 1027
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 552 (199.4 bits), Expect = 3.3e-104, Sum P(4) = 3.3e-104
Identities = 126/302 (41%), Positives = 172/302 (56%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F QW +I + ID S S ++ A+ P P+ + Q +G L
Sbjct: 940 FDSNYEQWLALIKYTASIDCFFSL----SQAAAALGEPYCRPE----IIEQKDGH--LYF 989
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP VPND++LG +S P ++LTGPNM GKSTLLR C+AVI+AQ
Sbjct: 990 EELRHPCINASAASTFVPNDVVLGGES----PNMIVLTGPNMAGKSTLLRQVCIAVIMAQ 1045
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
LGC+VP + ++ +I+TRLGA D IM+ STF+VE +ET +L + SLVILDEL
Sbjct: 1046 LGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDEL 1105
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG+AIAYAV LV I C F+THY L +F H V L MA A
Sbjct: 1106 GRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKI 1165
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
+ + FLY+L G CP+SYG+ VA MAG+P+KV++AA A ++++ +
Sbjct: 1166 -------RRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELEQASASFINA 1218
Query: 1034 SE 1035
S+
Sbjct: 1219 SD 1220
Score = 449 (163.1 bits), Expect = 3.3e-104, Sum P(4) = 3.3e-104
Identities = 134/448 (29%), Positives = 211/448 (47%)
Query: 144 YSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKR--------ILEDNLN 195
Y E D++ + A+ M+EDV G + P K+ L ++
Sbjct: 233 YVEPDHISEASSEASLPIDEVESMDEDVDGYSDHSVSVAAPIPKKESRKESSNSLYESYR 292
Query: 196 IGXXXXXXXXXXXXRMRLLQDSVAGVKNCEE------EA---DTTSKFEWLDPSKIRDAN 246
+G + + GV N EE EA + ++EWL +RDA+
Sbjct: 293 LGSQIASPSPSVSGSASPTKSNKNGVLNREEKRRQRMEAFKKENNERYEWL--LDVRDAD 350
Query: 247 RRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEI 306
+ R DP YD RTLYIPP A +KQ+W +K MD ++FF+ GKFYELYE DA I
Sbjct: 351 QNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAI 410
Query: 307 GHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS------EQAK 360
GH+ K+T V + VGI E+ D + +A+GY++ R++QLET+ ++ +
Sbjct: 411 GHQVFSLKLT-DRVNM-KMVGIPEASFDYWASQFIAKGYRIARVDQLETALGKEIKDRQR 468
Query: 361 ARHTNSVISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
+ V+ R L V+T T VD + D + + +AIKE + DN +G F+D +
Sbjct: 469 TQKEEKVVQRGLTQVLTSGTLVDEAMLTSDLSTYCMAIKE-SLQSDNEEPSFGICFIDTS 527
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPA 478
+ DD L LL QV PKE+I E + +++ +A+ K+ S+++
Sbjct: 528 TGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAI-KYCVSSSSI-WNFI 585
Query: 479 MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM-QHDIGFSALGGLISHLSRLMLD 537
T+F D V++ + YF K L++ + + + SA G L +L +L LD
Sbjct: 586 KPYTEFWDNERVEREIIAGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFWYLRQLKLD 645
Query: 538 -DVLRNGDILPYKVYRDC--LRMDGQTL 562
D+ G+ Y + L M+GQTL
Sbjct: 646 KDMCSMGNFDEYDASQQSTSLLMNGQTL 673
Score = 171 (65.3 bits), Expect = 3.3e-104, Sum P(4) = 3.3e-104
Identities = 40/95 (42%), Positives = 55/95 (57%)
Query: 539 VLRNGDILP-YKVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
+L NG L +++ + + TL+ L CVT GKRL +W+CHPL+ IN RL
Sbjct: 666 LLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAINARL 725
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
DVVE + N + + +L KLPDLERL+ RV A
Sbjct: 726 DVVELIADNPVIRDTIWGFLHKLPDLERLISRVHA 760
Score = 48 (22.0 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 1010 QKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDC 1059
+K++EA LA+ + E F F S +E+WL I + +DC
Sbjct: 916 KKLLEA-EELHLAIMSRMQEKFYI-----RFDSNYEQWLALIKYTASIDC 959
Score = 43 (20.2 bits), Expect = 3.3e-104, Sum P(4) = 3.3e-104
Identities = 17/59 (28%), Positives = 24/59 (40%)
Query: 30 KDSNFTTKQRNPVGDSSGQPTVSATE-DSSLEIRGTDTPPEKVPRQILPSGFKANEGTS 87
KDS+ TKQ+ G S P V + DS+L P + S N+ +S
Sbjct: 14 KDSSAKTKQKTLFGFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSS-NVNKNSS 71
Score = 42 (19.8 bits), Expect = 1.1e-61, Sum P(4) = 1.1e-61
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 212 RLLQDSVAGVKNCEEEADTTSK---FEWLDPS 240
+LL+ SV + EEE D+ +K F+ LD S
Sbjct: 131 KLLRTSVKQEPDSEEEIDSPTKKKSFKSLDTS 162
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 619 (223.0 bits), Expect = 5.8e-104, Sum P(4) = 5.8e-104
Identities = 131/296 (44%), Positives = 184/296 (62%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 910 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 961
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 962 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1021
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1022 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1081
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1082 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1141
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1142 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1195
Score = 370 (135.3 bits), Expect = 5.8e-104, Sum P(4) = 5.8e-104
Identities = 91/279 (32%), Positives = 140/279 (50%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KVG
Sbjct: 241 EWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVG 300
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA IG EL + + G G E + LV +GYKV R+EQ E
Sbjct: 301 KFYELYHMDALIGVSELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 357
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ ++T T + D + +LL++KE
Sbjct: 358 TPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEE 417
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 418 DSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKT 477
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
L+ + S L P + F DAS+ + + YF
Sbjct: 478 ILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYF 513
Score = 160 (61.4 bits), Expect = 5.8e-104, Sum P(4) = 5.8e-104
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL + IN+RLD +E LM + + V + L+KLPDLERL
Sbjct: 632 VDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERL 691
Query: 624 LGRV 627
L ++
Sbjct: 692 LSKI 695
Score = 113 (44.8 bits), Expect = 4.4e-77, Sum P(4) = 4.4e-77
Identities = 42/163 (25%), Positives = 70/163 (42%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + YG FVD + + ++G +DD C+ L+ P +V++E
Sbjct: 408 YLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 467
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTD-------FLDASEVK-KL-----VQLNG 498
L KE + L+ + S L P D L+ + KL V L
Sbjct: 468 KGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQ 527
Query: 499 YFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 528 VLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQEL 570
Score = 54 (24.1 bits), Expect = 5.8e-104, Sum P(4) = 5.8e-104
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 1 MQRQQSIHSFFQKC---SPANKSGA-ADMSGAR 29
M RQ +++SFF K S ANK+ A A G R
Sbjct: 1 MSRQSTLYSFFPKSPALSDANKASARASREGGR 33
Score = 37 (18.1 bits), Expect = 1.1e-56, Sum P(3) = 1.1e-56
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVV 376
+L+++++ R+ I +KL N++
Sbjct: 865 ELKSTKKGCKRYWTKTIEKKLANLI 889
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 615 (221.5 bits), Expect = 1.4e-103, Sum P(4) = 1.4e-103
Identities = 132/297 (44%), Positives = 184/297 (61%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P P P L
Sbjct: 1015 FDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTP--------PFLY 1066
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1067 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQAGLL 1126
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1127 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1186
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1187 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1246
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1247 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1301
Score = 382 (139.5 bits), Expect = 1.4e-103, Sum P(4) = 1.4e-103
Identities = 95/280 (33%), Positives = 143/280 (51%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL + RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KVG
Sbjct: 346 EWLKEERRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVG 405
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA IG EL + + G G E + LV +GYKV R+EQ E
Sbjct: 406 KFYELYHMDALIGVSELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 462
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ V+T T + D + +LL++KE
Sbjct: 463 TPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKED 522
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ VYG FVD + + ++G +DD C+ L+ P +V++E L E K
Sbjct: 523 DSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGSLSTET-K 581
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF 500
+ K S S+ E L P + F DA + + + GYF
Sbjct: 582 MILKGSLSSSLQEGLIPG---SQFWDAGKTLRTLLEEGYF 618
Score = 155 (59.6 bits), Expect = 1.4e-103, Sum P(4) = 1.4e-103
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL + I++RLD +E LM + + V L+KLPDLERL
Sbjct: 737 IDTCHTPFGKRLLKQWLCAPLCNPYAISDRLDAIEDLMVVPDKISEVVDLLKKLPDLERL 796
Query: 624 LGRV 627
L ++
Sbjct: 797 LSKI 800
Score = 116 (45.9 bits), Expect = 8.9e-76, Sum P(4) = 8.9e-76
Identities = 44/164 (26%), Positives = 69/164 (42%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + VYG FVD + + ++G +DD C+ L+ P +V++E
Sbjct: 513 YLLSLKEKEDDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 572
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTPAMAVTD-------------FLDASEVKKLVQLN 497
L E K + K S S+ E L P D F D V L
Sbjct: 573 KGSLSTET-KMILKGSLSSSLQEGLIPGSQFWDAGKTLRTLLEEGYFTDKLNEDSGVMLP 631
Query: 498 GYFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 632 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQEL 675
Score = 52 (23.4 bits), Expect = 1.4e-103, Sum P(4) = 1.4e-103
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 1 MQRQQSIHSFFQKCSPA----NKSGAADMSGARKDSNFTTKQRNPVGDSSGQPT 50
M RQ +++SFF K SPA NK+ A S + +P GD++ T
Sbjct: 1 MSRQSTLYSFFPK-SPALTNANKAPARVSSEGSAPAAAAGASPSPGGDAAWSET 53
Score = 42 (19.8 bits), Expect = 8.9e-56, Sum P(4) = 8.9e-56
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 299 LYELDAEIGHKELDWKITLSGVGK-CRQVGISESGIDDAVEKLV 341
+YE K +D+ L G C+ GI E IDD K++
Sbjct: 819 MYEETTYSKKKIIDFLSALEGFKVICKIRGIMEEVIDDFKSKIL 862
Score = 37 (18.1 bits), Expect = 5.0e-102, Sum P(4) = 5.0e-102
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 15 SPANKSGAADMSGARKDSNFTT 36
+P N A +SG DSN T
Sbjct: 317 APQNSEPQAHISGGCDDSNRPT 338
Score = 37 (18.1 bits), Expect = 8.9e-56, Sum P(4) = 8.9e-56
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVV 376
+L+++++ R+ I +KL N++
Sbjct: 970 ELKSTKKGCKRYWTKTIEKKLANLI 994
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 619 (223.0 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 131/296 (44%), Positives = 184/296 (62%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 738 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 789
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 790 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 849
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 850 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 909
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 910 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 969
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 970 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1023
Score = 370 (135.3 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 91/279 (32%), Positives = 140/279 (50%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KVG
Sbjct: 69 EWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVG 128
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA IG EL + + G G E + LV +GYKV R+EQ E
Sbjct: 129 KFYELYHMDALIGVSELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 185
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ ++T T + D + +LL++KE
Sbjct: 186 TPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEE 245
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 246 DSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKT 305
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
L+ + S L P + F DAS+ + + YF
Sbjct: 306 ILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYF 341
Score = 160 (61.4 bits), Expect = 1.7e-103, Sum P(3) = 1.7e-103
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL + IN+RLD +E LM + + V + L+KLPDLERL
Sbjct: 460 VDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERL 519
Query: 624 LGRV 627
L ++
Sbjct: 520 LSKI 523
Score = 113 (44.8 bits), Expect = 1.7e-76, Sum P(3) = 1.7e-76
Identities = 42/163 (25%), Positives = 70/163 (42%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + YG FVD + + ++G +DD C+ L+ P +V++E
Sbjct: 236 YLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 295
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTD-------FLDASEVK-KL-----VQLNG 498
L KE + L+ + S L P D L+ + KL V L
Sbjct: 296 KGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQ 355
Query: 499 YFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 356 VLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQEL 398
Score = 37 (18.1 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVV 376
+L+++++ R+ I +KL N++
Sbjct: 693 ELKSTKKGCKRYWTKTIEKKLANLI 717
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 619 (223.0 bits), Expect = 1.8e-103, Sum P(4) = 1.8e-103
Identities = 131/296 (44%), Positives = 184/296 (62%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 370 (135.3 bits), Expect = 1.8e-103, Sum P(4) = 1.8e-103
Identities = 91/279 (32%), Positives = 140/279 (50%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KVG
Sbjct: 371 EWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVG 430
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA IG EL + + G G E + LV +GYKV R+EQ E
Sbjct: 431 KFYELYHMDALIGVSELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 487
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ ++T T + D + +LL++KE
Sbjct: 488 TPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEE 547
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 548 DSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKT 607
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
L+ + S L P + F DAS+ + + YF
Sbjct: 608 ILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYF 643
Score = 160 (61.4 bits), Expect = 1.8e-103, Sum P(4) = 1.8e-103
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL + IN+RLD +E LM + + V + L+KLPDLERL
Sbjct: 762 VDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERL 821
Query: 624 LGRV 627
L ++
Sbjct: 822 LSKI 825
Score = 113 (44.8 bits), Expect = 1.4e-76, Sum P(4) = 1.4e-76
Identities = 42/163 (25%), Positives = 70/163 (42%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + YG FVD + + ++G +DD C+ L+ P +V++E
Sbjct: 538 YLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 597
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTD-------FLDASEVK-KL-----VQLNG 498
L KE + L+ + S L P D L+ + KL V L
Sbjct: 598 KGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQ 657
Query: 499 YFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 658 VLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQEL 700
Score = 54 (24.1 bits), Expect = 1.8e-103, Sum P(4) = 1.8e-103
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 1 MQRQQSIHSFFQKC---SPANKSGA-ADMSGAR 29
M RQ +++SFF K S ANK+ A A G R
Sbjct: 1 MSRQSTLYSFFPKSPALSDANKASARASREGGR 33
Score = 37 (18.1 bits), Expect = 2.6e-56, Sum P(3) = 2.6e-56
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVV 376
+L+++++ R+ I +KL N++
Sbjct: 995 ELKSTKKGCKRYWTKTIEKKLANLI 1019
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 622 (224.0 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 132/297 (44%), Positives = 186/297 (62%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + S G M RP+IL P+ P P L
Sbjct: 968 FDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTP--------PFLD 1019
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
++G HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1020 LRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1079
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1080 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1139
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1140 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1199
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1200 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1254
Score = 372 (136.0 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 94/280 (33%), Positives = 142/280 (50%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KVG
Sbjct: 299 EWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLIIFYKVG 358
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA G EL + + G G E + LV +GYKV R+EQ E
Sbjct: 359 KFYELYHMDALTGVNELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 415
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ V+T T + D + +LL++KE
Sbjct: 416 TPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKEE 475
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ VYG FVD + + ++G +DD C+ L+ P +V++E L E K
Sbjct: 476 DSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTET-K 534
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF 500
+ K S S+ E L P + F DA++ + + YF
Sbjct: 535 MILKGSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEEYF 571
Score = 162 (62.1 bits), Expect = 2.1e-103, Sum P(3) = 2.1e-103
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL IN+RLD +E LM + + VA L+KLPDLERL
Sbjct: 690 IDTCHTPFGKRLLKQWLCAPLCSPYAINDRLDAIEDLMVVPDKISDVADLLKKLPDLERL 749
Query: 624 LGRV 627
L ++
Sbjct: 750 LSKI 753
Score = 118 (46.6 bits), Expect = 1.0e-76, Sum P(3) = 1.0e-76
Identities = 46/164 (28%), Positives = 73/164 (44%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + VYG FVD + + ++G +DD C+ L+ P +V++E
Sbjct: 466 YLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 525
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTP-------AMAVTDFLDASEVK-KL-----VQLN 497
L E K + K S S+ E L P A + L+ K KL V L
Sbjct: 526 KGNLSTET-KMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEEYFKEKLNEDSGVMLP 584
Query: 498 GYFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 585 QVLKGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQEL 628
Score = 37 (18.1 bits), Expect = 6.5e-56, Sum P(2) = 6.5e-56
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVV 376
+L+++++ R+ I +KL N++
Sbjct: 923 ELKSTKKGCKRYWTKTIEKKLANLI 947
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 605 (218.0 bits), Expect = 2.1e-102, Sum P(4) = 2.1e-102
Identities = 141/335 (42%), Positives = 194/335 (57%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + ++ +DVL S + + G+M RP + LP + + P L
Sbjct: 1041 FDKNYKDWQTAVECMAVLDVLLSMCRYSQSADGSMARPEMALPGDGSYSA------PFLD 1094
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG------EDSDDC--LPRTLLLTGPNMGGKSTLLR 843
++G HP G +PNDI +G E DD L +L+TGPNMGGKSTL+R
Sbjct: 1095 LRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEEEAQDDAKALAPCVLVTGPNMGGKSTLMR 1154
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
L VILAQLGC+VP E L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT
Sbjct: 1155 QCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILLHAT 1214
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLV+LDELGRGT+T+DG AIA AV ++L E+I CR LF+THYH L ++ P V L
Sbjct: 1215 NHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVEDHVQDPAVRLG 1274
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
HMAC ++ E+ S+ + + FLY+ GACP+SYG A +A +P+ V+++ A
Sbjct: 1275 HMACMVENECEDPSQ--ETITFLYKFIRGACPKSYGFNAARLANIPEDVIQSGHKKARDF 1332
Query: 1024 KKSIGES--FKSSEQRSEFSSLHEEWLKTIVNVSR 1056
++S FK +E E L T++ R
Sbjct: 1333 ERSTVSLRIFKKLCSFAESPRAEREQLTTLIQTLR 1367
Score = 382 (139.5 bits), Expect = 2.1e-102, Sum P(4) = 2.1e-102
Identities = 104/315 (33%), Positives = 153/315 (48%)
Query: 215 QDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQ 274
Q+S G + D K EWL K +DA R+R D YD TLY+P + L + +
Sbjct: 351 QNSANGTEGGSTVWDH-EKLEWLQDGKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGM 409
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+++W +KS+ D +LF+KVGKFYELY +DA IG EL+ +T G G E G
Sbjct: 410 RRWWQLKSEMFDTVLFYKVGKFYELYHMDAVIGVNELN--LTFMK-GTWAHSGFPEIGFG 466
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKAR--------HTNSVISRKLVNVVTPST----TV 382
+ LV +GYKV R+EQ ET + +AR + V+ R++ ++T T +
Sbjct: 467 RFSDVLVQKGYKVARVEQTETPDMMEARCKKLARPTKFDKVVKREVCRIITRGTQTYSVL 526
Query: 383 DGTIGP-DAVHLLAIKEGNCGPDNG-SVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
DG + +LL+IKE + G +YG F+D + R +G DD C+ L L+
Sbjct: 527 DGAPSETQSKYLLSIKEKSEEDSTGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLV 586
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
SP +VI+E E K + A S L A + F DA + K++ YF
Sbjct: 587 AHYSPAQVIFEKGNPSIETLKIFKAIVASSLQEGLN---AGSQFWDAQKTLKVLAEEDYF 643
Query: 501 NGSSSPWSKALENVM 515
S K E+V+
Sbjct: 644 KESKDDNKK--ESVL 656
Score = 162 (62.1 bits), Expect = 2.1e-102, Sum P(4) = 2.1e-102
Identities = 59/199 (29%), Positives = 98/199 (49%)
Query: 533 RLMLDDV-LRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGI 590
R++LD V L N +IL +G L LD+C T GKRLL+ WIC PL + I
Sbjct: 733 RMVLDGVTLANLEILQNSSTGG---PEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSSI 789
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP----LIGKKV 646
+RLD +E LM V L+KLPDLERLL ++ + P ++ ++V
Sbjct: 790 GDRLDALEDLMGAPSQTSEVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPDSRAILYEEV 849
Query: 647 L--KQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIF---DGSDGLDKFLT 701
+ K+++ F + ++G ++ +++ +M G + S ++ + + + DGL L+
Sbjct: 850 VYSKRKIADFLAALEGFKVMKEIVSIMEPVGEGLKS--KLLRQVVLLKTENEDGLFPDLS 907
Query: 702 QFEAAIDSDFPDYQNHDVT 720
D+ F D+Q T
Sbjct: 908 PELKRWDTAF-DHQKARTT 925
Score = 111 (44.1 bits), Expect = 4.6e-74, Sum P(4) = 4.6e-74
Identities = 44/165 (26%), Positives = 71/165 (43%)
Query: 392 HLLAIKEGNCGPDNG-SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+LL+IKE + G +YG F+D + R +G DD C+ L L+ SP +VI+
Sbjct: 537 YLLSIKEKSEEDSTGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVIF 596
Query: 451 ENRGLCKEAQKALRKF---------SAGSA---ALELTPAMAVTDFLDAS--EVKKLVQL 496
E E K + +AGS A + +A D+ S + KK L
Sbjct: 597 EKGNPSIETLKIFKAIVASSLQEGLNAGSQFWDAQKTLKVLAEEDYFKESKDDNKKESVL 656
Query: 497 NGYFNGSSSPWSK-ALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
+S +L +++ SALGG + +L + ++D L
Sbjct: 657 PPALKAMTSECDALSLTPKTGYELALSALGGCMFYLKKCLVDQEL 701
Score = 46 (21.3 bits), Expect = 2.1e-102, Sum P(4) = 2.1e-102
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 1 MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLE 60
M +Q S+ +FF K P + S A GD+ G+ S E++ +
Sbjct: 1 MAKQSSLFNFFSKSPPLAVKAKSSPSPAE-------------GDAPGRSNTSPKEEAKVN 47
Query: 61 IRGTDT-PPEK 70
+ T PP K
Sbjct: 48 SKKTPAKPPSK 58
Score = 43 (20.2 bits), Expect = 9.4e-74, Sum P(4) = 9.4e-74
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 45 SSGQPTVSATEDSSLEIRGTDTPPEKVPRQILPSGFKANE---GTSGGSSLFSSIMHKFV 101
S +P ++L TD ++ P F + GT GGS+++ +++
Sbjct: 314 SKSKPETPKRAPAALPSVSTDAK-SRLSAFSAPDNFDSQNSANGTEGGSTVWDHEKLEWL 372
Query: 102 KVDARQNANKRNEQHGN 118
+ R++A ++ + N
Sbjct: 373 QDGKRKDAQRKRQSDEN 389
Score = 37 (18.1 bits), Expect = 1.8e-101, Sum P(4) = 1.8e-101
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 50 TVSATEDSSLEIRGTDTPPEKVPR 73
TVS E S E++ P + PR
Sbjct: 211 TVSDAEMSEEEVKEKTKPSRRPPR 234
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 613 (220.8 bits), Expect = 2.7e-102, Sum P(3) = 2.7e-102
Identities = 132/298 (44%), Positives = 186/298 (62%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + S G M RP+IL P+ P P L
Sbjct: 958 FDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTP--------PFLD 1009
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
++G HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1010 LRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1069
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1070 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1129
Query: 909 ILDEL-GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
++DEL GRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1130 LVDELVGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMAC 1189
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1190 MVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1245
Score = 372 (136.0 bits), Expect = 2.7e-102, Sum P(3) = 2.7e-102
Identities = 94/280 (33%), Positives = 142/280 (50%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KVG
Sbjct: 289 EWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLIIFYKVG 348
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA G EL + + G G E + LV +GYKV R+EQ E
Sbjct: 349 KFYELYHMDALTGVNELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 405
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ V+T T + D + +LL++KE
Sbjct: 406 TPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKEE 465
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ VYG FVD + + ++G +DD C+ L+ P +V++E L E K
Sbjct: 466 DSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTET-K 524
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF 500
+ K S S+ E L P + F DA++ + + YF
Sbjct: 525 MILKGSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEEYF 561
Score = 162 (62.1 bits), Expect = 2.7e-102, Sum P(3) = 2.7e-102
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL IN+RLD +E LM + + VA L+KLPDLERL
Sbjct: 680 IDTCHTPFGKRLLKQWLCAPLCSPYAINDRLDAIEDLMVVPDKISDVADLLKKLPDLERL 739
Query: 624 LGRV 627
L ++
Sbjct: 740 LSKI 743
Score = 118 (46.6 bits), Expect = 1.3e-75, Sum P(3) = 1.3e-75
Identities = 46/164 (28%), Positives = 73/164 (44%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + VYG FVD + + ++G +DD C+ L+ P +V++E
Sbjct: 456 YLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 515
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTP-------AMAVTDFLDASEVK-KL-----VQLN 497
L E K + K S S+ E L P A + L+ K KL V L
Sbjct: 516 KGNLSTET-KMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEEYFKEKLNEDSGVMLP 574
Query: 498 GYFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 575 QVLKGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQEL 618
Score = 37 (18.1 bits), Expect = 7.4e-55, Sum P(2) = 7.4e-55
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 352 QLETSEQAKARHTNSVISRKLVNVV 376
+L+++++ R+ I +KL N++
Sbjct: 913 ELKSTKKGCKRYWTKTIEKKLANLI 937
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 492 (178.3 bits), Expect = 1.8e-100, Sum P(3) = 1.8e-100
Identities = 122/346 (35%), Positives = 186/346 (53%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I+DANR RP P YD ++Y+PP A ++ S + QYW +K D ++FFK
Sbjct: 315 RYPWL--ADIQDANRNRPGHPDYDPGSVYVPPSAWRQFSPFETQYWEIKKNLWDTVVFFK 372
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T V R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 373 KGKFYELYENDATIGHQLFDLKLT-DRVNM-RMVGVPESSLDMWVNQFVAKGYKVARVDQ 430
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ KA+ + +I R+L ++T T VDG++ D AV+ AIKE
Sbjct: 431 MESALGKEMRERDTKAKKADKIIRRELTCILTGGTLVDGSMLQDDNAVYCAAIKESVV-- 488
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + ++ DD + Q SP+E+I E L +A + L
Sbjct: 489 -DDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFVAQTSPRELILEKSHLSTKALRIL 547
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDI 519
+ ++ + L P T+F DA ++ + +GYF G W L+ D+
Sbjct: 548 KNNTSPTTIWNYLKPG---TEFWDADVARRELDCSGYFVSGEGQEEVWPAKLKEARDKDL 604
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL 562
SALG L +L L L+ ++L G+ Y ++R+ L +DGQ+L
Sbjct: 605 LMSALGALTQYLRMLKLERNLLSQGNFAWYNPIHRNGTLILDGQSL 650
Score = 486 (176.1 bits), Expect = 1.8e-100, Sum P(3) = 1.8e-100
Identities = 116/280 (41%), Positives = 154/280 (55%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I IS +D L S A +S A+ +P P N + V++ L HP
Sbjct: 921 WLQAIRIISQLDCLISLA----KASSALGQPCCRPVFVN------DERTVVEFNELRHPC 970
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L +PNDI LG D + LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 971 MLNTVDDF-IPNDIKLGGDEANIN----LLTGANAAGKSTILRMSCIAVIMAQIGCYVPA 1025
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1026 VSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1085
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF +HP + + M A + EN
Sbjct: 1086 DGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARRMQIAV--DEEN----- 1138
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+P KV+ + AA
Sbjct: 1139 KRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAA 1178
Score = 161 (61.7 bits), Expect = 1.8e-100, Sum P(3) = 1.8e-100
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
TL+ L+ C+T GKRL R W+CHPL +++ +N RLD V+ L + + + + K+P
Sbjct: 667 TLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDHSLREQFSSQMSKMP 726
Query: 619 DLERLLGRVKA 629
DLERL+ R+ A
Sbjct: 727 DLERLISRIHA 737
Score = 44 (20.5 bits), Expect = 4.0e-54, Sum P(3) = 4.0e-54
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 1044 HEEWLKTIVNVSRVDC 1059
+E WL+ I +S++DC
Sbjct: 918 YETWLQAIRIISQLDC 933
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 569 (205.4 bits), Expect = 5.4e-100, Sum P(4) = 5.4e-100
Identities = 131/350 (37%), Positives = 199/350 (56%)
Query: 686 KPPIFDGSDGLDK---FLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWS 742
KP FD + K F T+ + ++ + ++ +L E + + F E W
Sbjct: 858 KPKNFDFTSKAGKYQRFQTKELRELIAELDEAEDVQKKELK-EFCRFIFKEFYESYKTWD 916
Query: 743 EVIHAISCIDVLRSFA-VTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA 801
+I+ ++ +D L S + V+ ++ G M RP + P S+ P +++ HP
Sbjct: 917 TLINILAELDCLISLSRVSFLLADGVMSRPELYPASEKYV-------PFIELTSGRHP-C 968
Query: 802 LGENGGLPVPNDILLGEDSD----DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
L G +PNDI LG+ + +LLTGPNMGGKST LR C+ ILAQ+GC+
Sbjct: 969 LASMGVNFIPNDIYLGDIKQTGQFEDNKNLILLTGPNMGGKSTTLRMACVMAILAQIGCY 1028
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + ++L D IFTR+GA+D++M G+STF +E ET++ +++ ++ SL+I+DELGRGT
Sbjct: 1029 VPAKSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEETSNAVKQGSKHSLIIMDELGRGT 1088
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
STFDG AIAY++ R LVE + R LFATHYH L EF +P + HMAC E S
Sbjct: 1089 STFDGVAIAYSIVRYLVENLQSRCLFATHYHVLLDEFRHYPQIAYYHMACHV---DEKRS 1145
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
K ++FLYRL +G C S+G+ VA + G+ ++E A A ++++
Sbjct: 1146 K----VIFLYRLKAGECSSSFGINVAKVVGISDNLIEIAKQKAKEFEENL 1191
Score = 415 (151.1 bits), Expect = 5.4e-100, Sum P(4) = 5.4e-100
Identities = 120/365 (32%), Positives = 184/365 (50%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
DTT F P D+ +R+ DP YD TLY+PPE+LK+ + +QYW +KS D +
Sbjct: 226 DTTPYFAL--PENAMDSKKRKRTDPNYDPTTLYVPPESLKQFTPVMRQYWEIKSTNFDKI 283
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
LFFK+GKFYEL+ DA I HKELD L+ +GK G E +D KL++ GYKV
Sbjct: 284 LFFKLGKFYELFYEDALITHKELD----LNWMGKKMHTGFPEKALDKMASKLISLGYKVA 339
Query: 349 RIEQLETSEQAKARHTNS-----VISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNC 401
EQ ET EQ K R +SR+LV V+T T D D +L++++
Sbjct: 340 VAEQTETPEQMKQRLMREKSGPKCVSRELVQVMTKGT-YDQNNETDYQPRYLMSLR---- 394
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
N +G V+ + + V +NDD LL QV P+E++Y+ + + +K
Sbjct: 395 ---NFQTKFGIIIVESSTNVITVAYLNDDIHFTQFKTLLCQVKPQEIVYDPDNMTHDIKK 451
Query: 462 ALRKFSAGSAALELTPAMAVTD-FLDASEVKKLVQLNGYFNGSSSPWSKALENVM----- 515
++ +G A +L+P D + L + +G + W K L N+
Sbjct: 452 IIQ---SGYLAPQLSPLQNKNDNWNKGMAYNHLDKTHG--DVLEGKWPKLLNNLYNTEET 506
Query: 516 QHDIGFSALGGLISHL-SRLMLDDVLRNGDILPYKVY------RDCLRMDGQTL-YLDSC 567
+ D+ F ++ GL ++L S L+LD V+ + Y++Y R C+ +D Q+L +L+
Sbjct: 507 KRDLIFESMAGLFNYLKSILILDQVI---SVARYQIYDIEKGVRSCMILDSQSLQHLEIL 563
Query: 568 VTSSG 572
+SSG
Sbjct: 564 DSSSG 568
Score = 140 (54.3 bits), Expect = 5.4e-100, Sum P(4) = 5.4e-100
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 548 YKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK-NSE 605
YK++ D DG L Y++ T G R+L++WIC PL D+ I +R D +E L K NSE
Sbjct: 577 YKLHFD----DGSLLGYINKTKTPFGYRMLKNWICAPLMDINKIYDRYDAIEDLQKFNSE 632
Query: 606 VVMVVAQYLRKLPDLERLLGRV 627
+ + + KLPDLE++ GR+
Sbjct: 633 RDTFL-RGIEKLPDLEKMCGRI 653
Score = 48 (22.0 bits), Expect = 5.4e-100, Sum P(4) = 5.4e-100
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 12 QKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATED 56
Q+ +P K+G+A +GA K S Q + ++ Q T ED
Sbjct: 162 QQKTPVKKTGSASKAGATK-STPKFGQESAKKSATKQSTAKKAED 205
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 478 (173.3 bits), Expect = 1.7e-98, Sum P(4) = 1.7e-98
Identities = 122/361 (33%), Positives = 195/361 (54%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
K C++E + ++ WL +KI+D +R PD P +DK T++IPP A K S +KQYW +K
Sbjct: 283 KACKKEPE--DRYPWL--AKIQDMDRHSPDHPDFDKSTIFIPPMAWNKFSPFEKQYWEIK 338
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
+ D ++FFK GKFYELYE DA IGH+ D K+T V R VG+ E+ +D V + V
Sbjct: 339 QKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLT-DRVNM-RMVGVPEASLDIWVNQFV 396
Query: 342 ARGYKVGRIEQLETS------EQA---KARHTNSVISRKLVNVVTPSTTVDGTIGPD--A 390
A+GYKV R++Q+E++ E+ K + + +I R+L ++T T V+G++ D A
Sbjct: 397 AKGYKVARVDQMESALGKEMRERGGDKKNKKEDKIIRRELACILTGGTLVEGSMLQDDMA 456
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+AIKE N +G AFVD A + ++ DD + Q SP+E++
Sbjct: 457 TFCVAIKESTI---NNHPAFGIAFVDAATGQFFISQFEDDVDLTKFETFVAQTSPRELLL 513
Query: 451 ENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFN----GSSS 505
E + +A + L+ ++ + L P ++FLD ++ + YF G +
Sbjct: 514 EKSNISTKALRILKNNTSPTTIWNYLKPD---SEFLDPETTRRELSCGDYFKVADGGDET 570
Query: 506 P-WSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQT 561
W +AL+ D+ SA+G L+ +L L L+ +L G+ Y ++RD L +DGQ+
Sbjct: 571 EVWPEALDKSRDKDLLMSAMGALVHYLRVLKLERSLLSQGNFEWYNPIHRDGTLVLDGQS 630
Query: 562 L 562
L
Sbjct: 631 L 631
Score = 471 (170.9 bits), Expect = 1.7e-98, Sum P(4) = 1.7e-98
Identities = 116/280 (41%), Positives = 150/280 (53%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I IS +D L A AS S G P + V D+ V++ + L HP
Sbjct: 902 WIQAIRIISQLDCLICLA-KASSSLGE-------PSCRPTFV--DHERSVVEFEELRHPC 951
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L +PNDI LG DD LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 952 MLNTVDDF-IPNDIKLG--GDDA--NINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPA 1006
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1007 VSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1066
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF +HP + + M
Sbjct: 1067 DGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKRMQI-------QVDDAK 1119
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLYRL G S+G+ A M G+ +V+E A AA
Sbjct: 1120 RRVTFLYRLEDGVAEGSFGMHCAAMCGISDRVIERAEVAA 1159
Score = 178 (67.7 bits), Expect = 1.7e-98, Sum P(4) = 1.7e-98
Identities = 55/174 (31%), Positives = 88/174 (50%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
TL+ L+ C+T GKRL R W+CHPL +++ IN RLD V+ L + ++ + + K+P
Sbjct: 648 TLFNLLNRCITPFGKRLFRQWVCHPLCNIKKINERLDAVDMLNADRSILEQFSSLMSKMP 707
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLL--MLMHKEGH 676
DLERL+ R+ A V + V L G + ++ + + + G + L+ ML KE
Sbjct: 708 DLERLISRIHAGVCKAEDFVRVLEGFEQIEYAMSMLSAFGGGNGLVDRLISSMLDLKE-- 765
Query: 677 IIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSIL 730
P L+ F FD D+ L E I+ DF D ++ + + S+L
Sbjct: 766 --P-LT--FWKSAFDRKKVRDEKLLIPERGIEEDF-DESADNIVRIKKDLQSLL 813
Score = 40 (19.1 bits), Expect = 1.7e-98, Sum P(4) = 1.7e-98
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 117 GNSSTVCSVFGKTGDLEASSQQGTAS 142
G +++ F K+G ASS+ T S
Sbjct: 27 GKQASILGFFAKSGTPSASSKLPTRS 52
Score = 38 (18.4 bits), Expect = 2.7e-98, Sum P(4) = 2.7e-98
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 66 TPPEKVPRQILPSGFKANEGTSGGSS 91
TP +Q GF A GT SS
Sbjct: 21 TPAASTGKQASILGFFAKSGTPSASS 46
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 505 (182.8 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 128/333 (38%), Positives = 170/333 (51%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + +S +D L S A AS S G P S P +D VL+
Sbjct: 859 FDEHYSTWLSAVRVVSQLDCLISLA-KASSSLG---EP-----SCRPTFVEDERS-VLEF 908
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + +PNDI LG P LLTG N GKSTLLR TC+AVI+AQ
Sbjct: 909 EELRHPCLISSVDDF-IPNDIQLGGSG----PNIDLLTGANAAGKSTLLRMTCVAVIMAQ 963
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 964 VGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1023
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF +HP + + M N
Sbjct: 1024 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDEN- 1082
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
++ + FLY+L G S+G+ A M G+P KV+E A AA + + +S
Sbjct: 1083 ------ERRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVAAKQWEHT-SRLTES 1135
Query: 1034 SEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDA 1066
E+R + W + R +DD +
Sbjct: 1136 LERRKGGGLVGLGWWSDVAWALRETKEGEDDSS 1168
Score = 415 (151.1 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 121/365 (33%), Positives = 185/365 (50%)
Query: 223 NCEEEADTTS---KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWN 279
+ + +A TT ++ WL + IRD + DP YD RTLYIPP A K S +KQYW
Sbjct: 243 SAKPKAHTTEPEQRYPWL--ANIRDIDGHPIGDPEYDPRTLYIPPLAWSKFSPFEKQYWE 300
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
+K ++ D ++FFK GKFYELYE DA IGH+ D K+T V R VG+ ES +D +
Sbjct: 301 IKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLT-DRVNM-RMVGVPESSLDHWANQ 358
Query: 340 LVARGYKVGRIEQLETSEQAKARHTNS---------VISRKLVNVVTPSTTVDGTIGPD- 389
VA+G+K+ R++Q E++ + R + +I R+L V+T T V+G + D
Sbjct: 359 FVAKGFKIARVDQSESALGKEMRERDGKKGGGKEEKIIRRELACVLTAGTLVEGAMLQDD 418
Query: 390 -AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ +AIKE +N +G AFVD A + ++ DD + Q P+E+
Sbjct: 419 MSTFCVAIKEAII--EN-LPAFGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQEL 475
Query: 449 IYENRGLCKEAQKALR--KFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF---- 500
+ E + +QKALR K + G + L P +F +A + + + YF
Sbjct: 476 LLEKSTV---SQKALRILKNNTGPTTIWNYLKPGK---EFWEADITVRELDASEYFVSQD 529
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRM 557
N + W +AL ++ SA G L+ +L L L+ D++ G+ Y + L +
Sbjct: 530 NDNIHAWPEALRQARDKELVMSAFGALVQYLRLLKLERDLITIGNFSWYDPIKKASSLVL 589
Query: 558 DGQTL 562
DGQTL
Sbjct: 590 DGQTL 594
Score = 176 (67.0 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 51/163 (31%), Positives = 85/163 (52%)
Query: 557 MDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
+DG TL+ L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S V A L
Sbjct: 608 VDG-TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQL 666
Query: 615 RKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIAMDLLMLMH 672
K+PDLERL+ +R+ A++C + +VL+ +Q++ SL+K ++ +
Sbjct: 667 TKMPDLERLI----SRIHAANCRAQDFV--RVLEGFEQIEYTMSLLKDSGSGEGVIGQLI 720
Query: 673 KEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQ 715
K + L +K FD + + + + ++ DF Q
Sbjct: 721 KSMPDLTELLEYWKTA-FDHNQAKESGILVPKPGVEEDFDSSQ 762
Score = 53 (23.7 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 1 MQRQQSIHSFFQKCSPANKS 20
M+ Q+SI FFQK SP+ S
Sbjct: 26 MKNQKSILGFFQKSSPSTPS 45
Score = 42 (19.8 bits), Expect = 6.8e-48, Sum P(4) = 6.8e-48
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 1038 SEFSSLHEEWLKTIVNVSRVDC 1059
+ F + WL + VS++DC
Sbjct: 857 ARFDEHYSTWLSAVRVVSQLDC 878
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 505 (182.8 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 128/333 (38%), Positives = 170/333 (51%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + +S +D L S A AS S G P S P +D VL+
Sbjct: 859 FDEHYSTWLSAVRVVSQLDCLISLA-KASSSLG---EP-----SCRPTFVEDERS-VLEF 908
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + +PNDI LG P LLTG N GKSTLLR TC+AVI+AQ
Sbjct: 909 EELRHPCLISSVDDF-IPNDIQLGGSG----PNIDLLTGANAAGKSTLLRMTCVAVIMAQ 963
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 964 VGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1023
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF +HP + + M N
Sbjct: 1024 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDEN- 1082
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
++ + FLY+L G S+G+ A M G+P KV+E A AA + + +S
Sbjct: 1083 ------ERRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVAAKQWEHT-SRLTES 1135
Query: 1034 SEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDA 1066
E+R + W + R +DD +
Sbjct: 1136 LERRKGGGLVGLGWWSDVAWALRETKEGEDDSS 1168
Score = 415 (151.1 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 121/365 (33%), Positives = 185/365 (50%)
Query: 223 NCEEEADTTS---KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWN 279
+ + +A TT ++ WL + IRD + DP YD RTLYIPP A K S +KQYW
Sbjct: 243 SAKPKAHTTEPEQRYPWL--ANIRDIDGHPIGDPEYDPRTLYIPPLAWSKFSPFEKQYWE 300
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
+K ++ D ++FFK GKFYELYE DA IGH+ D K+T V R VG+ ES +D +
Sbjct: 301 IKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLT-DRVNM-RMVGVPESSLDHWANQ 358
Query: 340 LVARGYKVGRIEQLETSEQAKARHTNS---------VISRKLVNVVTPSTTVDGTIGPD- 389
VA+G+K+ R++Q E++ + R + +I R+L V+T T V+G + D
Sbjct: 359 FVAKGFKIARVDQSESALGKEMRERDGKKGGGKEEKIIRRELACVLTAGTLVEGAMLQDD 418
Query: 390 -AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ +AIKE +N +G AFVD A + ++ DD + Q P+E+
Sbjct: 419 MSTFCVAIKEAII--EN-LPAFGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQEL 475
Query: 449 IYENRGLCKEAQKALR--KFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF---- 500
+ E + +QKALR K + G + L P +F +A + + + YF
Sbjct: 476 LLEKSTV---SQKALRILKNNTGPTTIWNYLKPGK---EFWEADITVRELDASEYFVSQD 529
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRM 557
N + W +AL ++ SA G L+ +L L L+ D++ G+ Y + L +
Sbjct: 530 NDNIHAWPEALRQARDKELVMSAFGALVQYLRLLKLERDLITIGNFSWYDPIKKASSLVL 589
Query: 558 DGQTL 562
DGQTL
Sbjct: 590 DGQTL 594
Score = 176 (67.0 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 51/163 (31%), Positives = 85/163 (52%)
Query: 557 MDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
+DG TL+ L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S V A L
Sbjct: 608 VDG-TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQL 666
Query: 615 RKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIAMDLLMLMH 672
K+PDLERL+ +R+ A++C + +VL+ +Q++ SL+K ++ +
Sbjct: 667 TKMPDLERLI----SRIHAANCRAQDFV--RVLEGFEQIEYTMSLLKDSGSGEGVIGQLI 720
Query: 673 KEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQ 715
K + L +K FD + + + + ++ DF Q
Sbjct: 721 KSMPDLTELLEYWKTA-FDHNQAKESGILVPKPGVEEDFDSSQ 762
Score = 53 (23.7 bits), Expect = 5.3e-97, Sum P(4) = 5.3e-97
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 1 MQRQQSIHSFFQKCSPANKS 20
M+ Q+SI FFQK SP+ S
Sbjct: 26 MKNQKSILGFFQKSSPSTPS 45
Score = 42 (19.8 bits), Expect = 6.8e-48, Sum P(4) = 6.8e-48
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 1038 SEFSSLHEEWLKTIVNVSRVDC 1059
+ F + WL + VS++DC
Sbjct: 857 ARFDEHYSTWLSAVRVVSQLDC 878
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 504 (182.5 bits), Expect = 1.5e-92, Sum P(3) = 1.5e-92
Identities = 121/285 (42%), Positives = 157/285 (55%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
++ W I AIS ID + S A T+ RP + + NG L K L
Sbjct: 820 STTWFPTIKAISNIDCILSLARTSESLGFPACRPNFKDEIDPTTGHKLNG--YLSFKELR 877
Query: 798 HP-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
HP + G NG +PND+ LG+ + + LLTG N GKST+LR TC+AVI+AQLG
Sbjct: 878 HPCYNAGVNGATEFIPNDVHLGKST----AQIALLTGANAAGKSTILRMTCIAVIMAQLG 933
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
C+VPCE LS D I TRLGA D IM G+STF VE +ET +L AT +L++LDELGR
Sbjct: 934 CYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELSETRKILDMATNRTLIVLDELGR 993
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
G S+ DG+AIA V + + FATHY L + F HP V MA
Sbjct: 994 GGSSSDGFAIAEGVLHHISTHVQSLGFFATHYGTLGQSFTHHPMVKPLQMAILV------ 1047
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+G +++ FLY+L G S+G+ VA M G+P+ VVE A AA
Sbjct: 1048 -DEGSKKVTFLYKLIEGQSEGSFGMHVAAMCGIPRSVVENAERAA 1091
Score = 425 (154.7 bits), Expect = 1.5e-92, Sum P(3) = 1.5e-92
Identities = 117/357 (32%), Positives = 176/357 (49%)
Query: 211 MRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKM 270
+R ++D G K+ + +++WL RDA R P DP YD RTL+IP +A +
Sbjct: 184 VRPVRDVSPG-KHSNFSKNNEERYQWLVDE--RDAAGRPPSDPEYDPRTLHIPAQAWARF 240
Query: 271 SASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISE 330
+ +KQYW +KS+ D ++FFK GKF+ELYE DA + ++ D KI G + GI E
Sbjct: 241 TPFEKQYWQIKSKMWDCIVFFKKGKFFELYEKDAHLANQLFDLKIAGGGRANMQLAGIPE 300
Query: 331 SGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVD-GTIGP 388
D + + GYKV +++Q E+ + R N ++ R+L V++ T D +
Sbjct: 301 MSFDYWASQFIQHGYKVAKVDQKESMLAKEMREGNKGIVERELQCVLSGGTLTDLKMLHS 360
Query: 389 D------AVH-----LLAIKEGNCGPDNGSV---VYGFAFVDCAALRVWVGTINDDASCA 434
D ++H L A++ G P ++G AF+D A R+ + DD+ C
Sbjct: 361 DQSTYCLSIHEAPLALYAMERGEAVPPEAQQQGRLFGTAFIDTATGRICLLEFEDDSECT 420
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLV 494
L L+ QV PKEV+ E R L A K + KF++ + A +F D + V
Sbjct: 421 QLDTLMAQVRPKEVVMEKRNLSVIAHKIV-KFNSQPDCIFNYRTSA--EFYDYARTFDEV 477
Query: 495 QLNGYFNGSSSPWSKALENVMQHD--IGFSALGGLISHLSRLMLD-DVLRNGDILPY 548
GYF G S W L+ +GFSA GGL+S+L L LD +L G + Y
Sbjct: 478 SNGGYFAGMDS-WPAILKQYYDQGKKVGFSAFGGLLSYLQWLKLDKSLLSMGMVEEY 533
Score = 132 (51.5 bits), Expect = 1.5e-92, Sum P(3) = 1.5e-92
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
D TL+ ++ +T GKR +R+W+ HPL E I RLD V+ L+ + ++ L
Sbjct: 563 DKGTLFKLVNRAITPMGKRQMRTWVMHPLLRKEHIEERLDSVDQLLNEMPIRDLLESSLT 622
Query: 616 KLPDLERLLGRV 627
LPDLERLL RV
Sbjct: 623 GLPDLERLLARV 634
Score = 47 (21.6 bits), Expect = 4.1e-44, Sum P(3) = 4.1e-44
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 1010 QKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDC 1059
QK+ + + A + K + E K + + W TI +S +DC
Sbjct: 787 QKLARSMAEAR-ELHKILEEGLKGRLYQKFDQNFSTTWFPTIKAISNIDC 835
Score = 39 (18.8 bits), Expect = 4.3e-52, Sum P(3) = 4.3e-52
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 90 SSLFSSIMHKFVKVDARQNANKRNEQHGNSSTV-----CSVFGKT-GDLEA-SSQQGTAS 142
+S F +K KVD +++ + + GN V C + G T DL+ S Q T
Sbjct: 307 ASQFIQHGYKVAKVDQKESMLAKEMREGNKGIVERELQCVLSGGTLTDLKMLHSDQSTYC 366
Query: 143 L 143
L
Sbjct: 367 L 367
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 553 (199.7 bits), Expect = 7.3e-92, Sum P(3) = 7.3e-92
Identities = 126/287 (43%), Positives = 169/287 (58%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL S A A + P ++ + P ++ + G
Sbjct: 872 LFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQM-VICVPELVSDADQPFIQLEEG-- 928
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP A N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 929 -------YHPCA---NASTYIPNGLELGTASEAPLS---LLTGPNMGGKSTLMREVGLLV 975
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 976 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1035
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V L + CR LF+THYH L F + +TL HMAC
Sbjct: 1036 LDELGRGTATYDGTAIAASVVNFLAN-LKCRTLFSTHYHNLIDFFHNDKRITLGHMACMV 1094
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A
Sbjct: 1095 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRA 1140
Score = 360 (131.8 bits), Expect = 7.3e-92, Sum P(3) = 7.3e-92
Identities = 106/319 (33%), Positives = 150/319 (47%)
Query: 216 DSVAGVKNCEEEADTT-SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQ 274
D V N +E K E+L P KI+D RRPD P YDK TL++P + L +S
Sbjct: 206 DIVTNTSNLDEPVVWPHQKLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGV 265
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+Q+W +KS D +LFFKVGKFYELY +DA++G EL + G+ G E D
Sbjct: 266 RQWWVLKSDNYDCVLFFKVGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFD 322
Query: 335 DAVEKLVARGYKVGRIEQLETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT-- 385
LV RG+KV R+EQ ET + + KA + V++R++ + T V G+
Sbjct: 323 KMSTILVDRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQC 382
Query: 386 -IGPDAV--HLLAIKEGNCGPDNGSVV-YGFAFVDCAALRVWVGTINDDASCAALGALLM 441
IGP+ ++LAI E D G+ YG F+D + +G DD +C+ L L+
Sbjct: 383 KIGPNHQPNYMLAIVE----KDEGTCSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVS 438
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
P + E L + Q+ +R G E P A + KL+ Y
Sbjct: 439 HHMPVLFLNEKSALSQRTQQIVRTV-LGGILKEPVPGNG-KHACSAEKTLKLLAERYYAG 496
Query: 502 -GSSSPWSKALENVMQHDI 519
GS W L MQ D+
Sbjct: 497 PGSDDNWPLVLRT-MQSDM 514
Score = 138 (53.6 bits), Expect = 7.3e-92, Sum P(3) = 7.3e-92
Identities = 50/156 (32%), Positives = 69/156 (44%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER- 622
LD C T GKRLL W+C P DV I R D + L++ + V L +PD ER
Sbjct: 602 LDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDAIGELIRMPTELQEVRALLAPMPDFERN 661
Query: 623 -----LLG--RVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEG 675
L G ++K S +L K KQ+++ F +++KG L + H+
Sbjct: 662 LAQIHLFGNKQIKQMDHPDSRAIL-FEEKLYNKQKLQGFMAVLKGFNDLTKLPTMFHQCK 720
Query: 676 HIIPSLSRIFKPPIFDGS-DGLDKFLTQFEAAIDSD 710
+ L RI + P GS L K L F A D D
Sbjct: 721 TTL--LKRITQLPESGGSFPDLSKELQYFATAFDHD 754
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 502 (181.8 bits), Expect = 1.5e-91, Sum P(4) = 1.5e-91
Identities = 119/282 (42%), Positives = 155/282 (54%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 412 (150.1 bits), Expect = 1.5e-91, Sum P(4) = 1.5e-91
Identities = 109/334 (32%), Positives = 166/334 (49%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
K+ + +++WL RDA RR DP YD RTLYIP A K + +KQYW +K
Sbjct: 265 KSSKFNKQNEERYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIK 322
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
S+ D ++FFK GKF+ELYE DA + + D KI G + GI E + + +
Sbjct: 323 SKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFI 382
Query: 342 ARGYKVGRIEQLETSEQAKARH-TNSVISRKLVNVVTPSTTVDGT-IGPD-AVHLLAIKE 398
GYKV +++Q E+ + R + ++ R+L ++T T DG + D A LAI+E
Sbjct: 383 QMGYKVAKVDQRESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIRE 442
Query: 399 --GN----CGPDNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
GN D+ ++V +G AF+D A + + DD+ C L L+ QV P
Sbjct: 443 EPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRP 502
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
EV+ E L A K + KF++ A+ A +F D + + + YF+ +
Sbjct: 503 MEVVMERNNLSTLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISSEYFS-TEE 559
Query: 506 PWSKALENVMQ--HDIGFSALGGLISHLSRLMLD 537
W + L++ +GFSA GGL+ +L L LD
Sbjct: 560 DWPEVLKSYYDTGKKVGFSAFGGLLYYLKWLKLD 593
Score = 125 (49.1 bits), Expect = 1.5e-91, Sum P(4) = 1.5e-91
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
D TL+ + +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 635 DKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLEITFS 694
Query: 616 KLPDLERLLGRVKAR 630
KLPDLER+L R+ +R
Sbjct: 695 KLPDLERMLARIHSR 709
Score = 60 (26.2 bits), Expect = 1.5e-91, Sum P(4) = 1.5e-91
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 3 RQQSIHSFFQKCSPANKSG--AADMSGARKDSNFTTK-QRNPVGDSSGQPTVSATEDSSL 59
+Q S+ SFF K P+ + A ++ T K +NP G +G+ V ED+ L
Sbjct: 26 KQSSLLSFFSKQVPSGTPSKKVQKPTPATLENTATDKITKNPQGGKTGKLFVDVDEDNDL 85
Query: 60 EI 61
I
Sbjct: 86 TI 87
Score = 44 (20.5 bits), Expect = 4.6e-43, Sum P(4) = 4.6e-43
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 1020 ALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDC 1059
A + K++ E K+ + + + W+ TI +S +DC
Sbjct: 868 AKEIHKTLEEDLKNRLCQKFDAHYNTIWMPTIQAISNIDC 907
Score = 37 (18.1 bits), Expect = 5.8e-44, Sum P(3) = 5.8e-44
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 93 FSSIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEA 134
F ++ F + Q++ K N+ G+ S S F + G +EA
Sbjct: 716 FEKVITAFETIIELQDSLKNNDLKGDVSKYISSFPE-GLVEA 756
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 577 (208.2 bits), Expect = 3.2e-90, Sum P(3) = 3.2e-90
Identities = 130/311 (41%), Positives = 184/311 (59%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L E L ++ F + + I +S +D L S + SS M RPL
Sbjct: 928 LSKEVLKKILSNFAIYFNHFQIAITKLSQLDCLLSLYKVSFQSSIQMCRPLF-------- 979
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
V D G + +K + HP ++G +PNDI L +++ P ++LTGPNMGGKSTL
Sbjct: 980 VSSDQRG-FIDVKDMRHPCIYSKSGDDFIPNDISLNTENNP--PSLMVLTGPNMGGKSTL 1036
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
LR +C+ VI+AQ+GC+V C +S+ D IFTRLGA D I+ G+STF+VE ET++VL+
Sbjct: 1037 LRQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKY 1096
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT+ SLVILDELGRGTSTFDGY+IAY+V L ++ +FATHY L E ++
Sbjct: 1097 ATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLIS 1156
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
+M C ++ +++FLY+L SG CP SYGL VA MAG+P++++ A +
Sbjct: 1157 TAYMTCHVDEEAK-------KVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKST 1209
Query: 1022 AMKK-SIGESF 1031
M+K S+ SF
Sbjct: 1210 QMEKDSVLVSF 1220
Score = 393 (143.4 bits), Expect = 3.2e-90, Sum P(3) = 3.2e-90
Identities = 101/301 (33%), Positives = 161/301 (53%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I+DAN D P YDKRTL+IP L K S ++Q+W++KS+ D ++FFK GKFYELYE
Sbjct: 332 IKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKKGKFYELYE 391
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS----- 356
DA+IGH++L K+T V R VG+ E + KL+ G+KV +++Q+ETS
Sbjct: 392 SDADIGHQQLHLKLT-DRVNM-RMVGVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAK 449
Query: 357 ---EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYG 411
E+ +S+I R+L +++T T +D + D + +L+AIKE YG
Sbjct: 450 RQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKENEYDKQ-----YG 504
Query: 412 FAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA 471
FVD + ++ TI DD + LL+Q+ PKE++YE + +++ S
Sbjct: 505 VCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTISIMKRVL--ST 562
Query: 472 ALELTPAMAVTDFLDASE-VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISH 530
+ A ++ D ++ ++++ QL G +P + L + + ALGG IS+
Sbjct: 563 VKPVMNARLSLEYWDPTDTMERITQLCG----GKTP--ETLCQMKNEEYLMGALGGCISY 616
Query: 531 L 531
L
Sbjct: 617 L 617
Score = 242 (90.2 bits), Expect = 2.3e-74, Sum P(3) = 2.3e-74
Identities = 81/306 (26%), Positives = 140/306 (45%)
Query: 356 SEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFA 413
+E+ +S+I R+L +++T T +D + D + +L+AIKE YG
Sbjct: 452 NEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKENEYDKQ-----YGVC 506
Query: 414 FVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRG-------LCKEAQKALRKF 466
FVD + ++ TI DD + LL+Q+ PKE++YE + K ++
Sbjct: 507 FVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTISIMKRVLSTVKPV 566
Query: 467 SAGSAALEL---TPAMA-VTDFLDASEVKKLVQLNG--YFNGSSSPWSKALENVMQHDIG 520
+LE T M +T + L Q+ Y G+ + +M IG
Sbjct: 567 MNARLSLEYWDPTDTMERITQLCGGKTPETLCQMKNEEYLMGALGG---CISYLMDIKIG 623
Query: 521 FSALG-GLISHLSRLML-DDVLRNGDILP-YKVYRDCLRMDGQT---LY--LDSCVTSSG 572
S + + L + + ++ +G L +++ + DG T L+ +D C T+ G
Sbjct: 624 NSVVEQARFKRFNPLDIGNSMILDGQCLVNLEIFNNST--DGSTEGTLFKLMDRCTTAFG 681
Query: 573 KRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ 632
KR+ R WIC PL + I +R +E+L + E + V L KLPDLER++ R++A+
Sbjct: 682 KRMFRQWICRPLANKNAIVDRQKAIEFLRDSPETLQKVTAILNKLPDLERMIARIRAQTS 741
Query: 633 ASSCIV 638
S ++
Sbjct: 742 KISDLI 747
Score = 65 (27.9 bits), Expect = 3.2e-90, Sum P(3) = 3.2e-90
Identities = 36/154 (23%), Positives = 67/154 (43%)
Query: 4 QQSIHSFF-----QKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSS 58
++ SFF ++ P S S SN +++Q + SS T + T +S
Sbjct: 26 EEGFDSFFDDIPTEELEPDLNSIPISSSQQTSTSNTSSQQTSSANTSSSATTTTTTNTNS 85
Query: 59 LEIRGTDTPPEKVPRQILPSGFKANEGTSGGS---SLFSSIMHKFVKVDARQNANKRNEQ 115
+I T P K+ LP+ F + T S S FS ++++ + + N N + +Q
Sbjct: 86 -QIPKAPTTPSKLK---LPTSFTSKSNTPTKSLPPSNFSLVVNE-QEEENEMNDNSKPQQ 140
Query: 116 HGNSSTVCSVFGKTGDLEASSQQGTASLYSE-KD 148
++F K+ ++ ++S + L+S KD
Sbjct: 141 QQQQQQQQNLF-KS-NITSNSGGSSNDLFSRFKD 172
Score = 38 (18.4 bits), Expect = 2.2e-87, Sum P(3) = 2.2e-87
Identities = 25/126 (19%), Positives = 47/126 (37%)
Query: 35 TTKQRNPVGDSSGQPTVSATEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFS 94
++ Q+ ++S Q T SA SS T ++P+ P+ T L +
Sbjct: 51 SSSQQTSTSNTSSQQTSSANTSSSATTTTTTNTNSQIPKA--PT-------TPSKLKLPT 101
Query: 95 SIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCN 154
S K N ++ N S V + + ++ +S+ ++ N+F N
Sbjct: 102 SFTSK-------SNTPTKSLPPSNFSLVVNEQEEENEMNDNSKPQQQQQQQQQQNLFKSN 154
Query: 155 GLANQG 160
+N G
Sbjct: 155 ITSNSG 160
Score = 37 (18.1 bits), Expect = 2.8e-87, Sum P(3) = 2.8e-87
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 10 FFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATED 56
F K P++ S + + + T + P + +P V+ ED
Sbjct: 232 FVNKNKPSSSSSSLNTNTTTTPKAPTITPKTPTKTPTRRPVVTYDED 278
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 518 (187.4 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 121/289 (41%), Positives = 164/289 (56%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-G 788
+ E F K W E + +S DVL S A+ A S M P + +P + D G
Sbjct: 867 VFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGVH 926
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P L ++ + + + N +G +LLTGPNMGGKSTL+R T +
Sbjct: 927 PCLALQSRNE---VTQTTSF-IANSTTMGASE----AAVMLLTGPNMGGKSTLMRQTAVL 978
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
ILA +G VP L+ D IFTR+GA DRIM GESTF +E ET +L+ AT+ SL+
Sbjct: 979 AILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHSLL 1038
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGTSTFDG AIA AV +++ + + CR F+THYH + F +HP+V L HM C
Sbjct: 1039 LVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSICDSFTNHPNVRLAHMKCV 1098
Query: 969 F-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
K N+E+ + D + FLY L SG CP+SYG A +AG+ +VV A
Sbjct: 1099 VDKENNEDPTMED--VTFLYELESGICPKSYGFYAAKLAGIDHQVVRNA 1145
Score = 375 (137.1 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 103/330 (31%), Positives = 160/330 (48%)
Query: 210 RMRLLQDSVAGVKNCEEEADTTSKFE-----WLDPSKIRDANRRRPDDPLYDKRTLYIPP 264
R R+++ + G KN E + +F+ +L P KIRD +R DP YD +TL++PP
Sbjct: 186 RKRIVEKTT-GAKNKAVELEPAERFDHESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPP 244
Query: 265 EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR 324
+ +K + +Q+W +KSQ+ D +L FKVGKFYE Y +DA + L+ I G
Sbjct: 245 DFHQKQTPGHRQWWTMKSQHFDTILLFKVGKFYETYHMDAVEVVRALN--IAFMR-GSYA 301
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-----VISRKLVNVVTPS 379
G E ++L+ GYKV RIEQ ET + + R+ + V+ R++ V +
Sbjct: 302 HAGFPEHAASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKTKEKVVRREVCRVTSNG 361
Query: 380 T----TVDG--------TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTI 427
T +DG T+ P A HLLAIKE + P+ G YG +D + +G
Sbjct: 362 TRTYGVLDGVDLGSASSTLDPTAKHLLAIKEFH-NPETGKSSYGVCMIDTTTAHIRIGQF 420
Query: 428 NDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLD 486
DD + L LL V + I E RG K++ S +E L P F+
Sbjct: 421 EDDDYRSQLRTLLANVIVVQAIVE-RGSISSTTKSIINGILFSVPVEHLLPKK---QFMT 476
Query: 487 ASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A +V ++V Y+ +S W + L+ +++
Sbjct: 477 AEDVVRIVSNEDYYGSDASEWPEVLKGMLE 506
Score = 115 (45.5 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 534 LMLDDV-LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
L+LD L N +I+P RD + ++ C T G+RLLRSW+ P D + +
Sbjct: 571 LILDGTALENLNIVPNG--RDS-HLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQ 627
Query: 593 RLDVVEYLMKN--SEVVMVVAQYLRKLPDLERLLGRV 627
R +++L+ S + L+K+PDL+RLL ++
Sbjct: 628 RQKAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKI 664
Score = 42 (19.8 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 2 QRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLEI 61
+RQ S+ SFF K +P ++ ++ + + K P + + V +S
Sbjct: 3 KRQSSLMSFFTK-TPKSEKPEEEVKEKSVEEPKSLKNDTPKISNDSEKKVLKRSNSK--- 58
Query: 62 RGTDTPPEKVPR 73
T + P K PR
Sbjct: 59 --TVSSPVKTPR 68
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 518 (187.4 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 121/289 (41%), Positives = 164/289 (56%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-G 788
+ E F K W E + +S DVL S A+ A S M P + +P + D G
Sbjct: 867 VFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKGVH 926
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P L ++ + + + N +G +LLTGPNMGGKSTL+R T +
Sbjct: 927 PCLALQSRNE---VTQTTSF-IANSTTMGASE----AAVMLLTGPNMGGKSTLMRQTAVL 978
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
ILA +G VP L+ D IFTR+GA DRIM GESTF +E ET +L+ AT+ SL+
Sbjct: 979 AILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHSLL 1038
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGTSTFDG AIA AV +++ + + CR F+THYH + F +HP+V L HM C
Sbjct: 1039 LVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSICDSFTNHPNVRLAHMKCV 1098
Query: 969 F-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
K N+E+ + D + FLY L SG CP+SYG A +AG+ +VV A
Sbjct: 1099 VDKENNEDPTMED--VTFLYELESGICPKSYGFYAAKLAGIDHQVVRNA 1145
Score = 375 (137.1 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 103/330 (31%), Positives = 160/330 (48%)
Query: 210 RMRLLQDSVAGVKNCEEEADTTSKFE-----WLDPSKIRDANRRRPDDPLYDKRTLYIPP 264
R R+++ + G KN E + +F+ +L P KIRD +R DP YD +TL++PP
Sbjct: 186 RKRIVEKTT-GAKNKAVELEPAERFDHESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPP 244
Query: 265 EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR 324
+ +K + +Q+W +KSQ+ D +L FKVGKFYE Y +DA + L+ I G
Sbjct: 245 DFHQKQTPGHRQWWTMKSQHFDTILLFKVGKFYETYHMDAVEVVRALN--IAFMR-GSYA 301
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-----VISRKLVNVVTPS 379
G E ++L+ GYKV RIEQ ET + + R+ + V+ R++ V +
Sbjct: 302 HAGFPEHAASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKTKEKVVRREVCRVTSNG 361
Query: 380 T----TVDG--------TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTI 427
T +DG T+ P A HLLAIKE + P+ G YG +D + +G
Sbjct: 362 TRTYGVLDGVDLGSASSTLDPTAKHLLAIKEFH-NPETGKSSYGVCMIDTTTAHIRIGQF 420
Query: 428 NDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLD 486
DD + L LL V + I E RG K++ S +E L P F+
Sbjct: 421 EDDDYRSQLRTLLANVIVVQAIVE-RGSISSTTKSIINGILFSVPVEHLLPKK---QFMT 476
Query: 487 ASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A +V ++V Y+ +S W + L+ +++
Sbjct: 477 AEDVVRIVSNEDYYGSDASEWPEVLKGMLE 506
Score = 115 (45.5 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 534 LMLDDV-LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
L+LD L N +I+P RD + ++ C T G+RLLRSW+ P D + +
Sbjct: 571 LILDGTALENLNIVPNG--RDS-HLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQ 627
Query: 593 RLDVVEYLMKN--SEVVMVVAQYLRKLPDLERLLGRV 627
R +++L+ S + L+K+PDL+RLL ++
Sbjct: 628 RQKAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKI 664
Score = 42 (19.8 bits), Expect = 8.7e-87, Sum P(4) = 8.7e-87
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 2 QRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLEI 61
+RQ S+ SFF K +P ++ ++ + + K P + + V +S
Sbjct: 3 KRQSSLMSFFTK-TPKSEKPEEEVKEKSVEEPKSLKNDTPKISNDSEKKVLKRSNSK--- 58
Query: 62 RGTDTPPEKVPR 73
T + P K PR
Sbjct: 59 --TVSSPVKTPR 68
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 494 (179.0 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
Identities = 129/332 (38%), Positives = 176/332 (53%)
Query: 725 ETLSI-LIELFIEKASQWSEVIHAISCIDVLRSFAVT-ASMSSGAMHRPLILPQSKNPAV 782
+TL I + E F + + W +VI I+ ID L A+T AS + G P + +
Sbjct: 875 DTLKIRMYEKFDKHYNVWMQVIQTIANIDCL--LALTKASETIG-------YPSCRPKLI 925
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
D G + K L HP + +PND+ LG D P LLTG N GKSTL+
Sbjct: 926 EADKG--CINFKELRHPCFVSTKEF--IPNDVQLGGDE----PHFGLLTGANAAGKSTLM 977
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R T LA+IL+Q+GC++P E L+ D I TRLGA D I+ G+STF VE +ET +L A
Sbjct: 978 RTTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNA 1037
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLVILDELGRG S+ DG+AIA +V L + FATHY L F +HP +
Sbjct: 1038 TPRSLVILDELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQ 1097
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
M S S N + FLY+L +G P+S+G+ VA M G+P +V+ A AA A
Sbjct: 1098 LRMGIVVDSGSRN-------ITFLYKLETGTAPKSFGMNVASMCGIPDAIVDNAEIAAKA 1150
Query: 1023 MKKSIGESFKSSEQRSEFSSLHEE----WLKT 1050
+++ + E + + SL + WL T
Sbjct: 1151 YEQTSKLKKLAEESKGDDISLGLQSDFVWLAT 1182
Score = 474 (171.9 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
Identities = 122/352 (34%), Positives = 191/352 (54%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
E + +++WL IRDA +R D P YD RTLYIP A K +A +KQYW +KS+ +
Sbjct: 274 EKENEERYQWL--VDIRDAEKRPIDHPDYDPRTLYIPQSAWSKFTAFEKQYWQIKSKMWN 331
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
++FF+ GKFYELYE DA I + + D KI G + GI E + ++ ++ GYK
Sbjct: 332 TVVFFQKGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYK 391
Query: 347 VGRIEQLETS--EQAKARHTNS--VISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGN 400
V ++EQ E+ +Q + T +I R+L ++T T + I D A + L+IKE +
Sbjct: 392 VAKVEQKESMLVKQMRGGATKEEKIIERELKGILTAGTLTNLDMISNDMATYCLSIKEED 451
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
++G+ +G AFVD A + ++DDA C L L+ Q++PKE+I E LC+ A
Sbjct: 452 --KEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQINPKEIICEKGNLCQIAT 509
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSS----SPWSKALENVM 515
K L KF S +T+F D +++LV+ Y++ + S + K L +
Sbjct: 510 KIL-KFCTHSDHQIWNALNPITEFWDYDIALEQLVKAK-YYDAENLDDYSNYPKVLVDFK 567
Query: 516 Q-HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL 562
+ H + F+A GGL+ +L L LD ++ G+I Y + R+ + +DG TL
Sbjct: 568 ENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNSASHMILDGVTL 619
Score = 148 (57.2 bits), Expect = 2.0e-52, Sum P(3) = 2.0e-52
Identities = 42/122 (34%), Positives = 66/122 (54%)
Query: 514 VMQHDIGFSALGGLIS-HLSRLMLDDVLRNGDILP-YKVYRDCLRMDGQT---LY--LDS 566
+++ D +LG + H+SR ++ +G L ++ + DG T L+ ++
Sbjct: 586 MLKLDTSIMSLGNIHEYHISRNSASHMILDGVTLNNLEILNNT--SDGTTKGTLFKLVNR 643
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVVAQYLRKLPDLERLLG 625
TS GKR L+ W+ HPL V+ IN R D V+YLM + E+ ++ L +PDLERLL
Sbjct: 644 ATTSFGKRQLQKWVLHPLFKVDEINQRYDSVDYLMNDGLELRSILQDTLANIPDLERLLA 703
Query: 626 RV 627
RV
Sbjct: 704 RV 705
Score = 42 (19.8 bits), Expect = 3.9e-39, Sum P(3) = 3.9e-39
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 1039 EFSSLHEEWLKTIVNVSRVDC 1059
+F + W++ I ++ +DC
Sbjct: 884 KFDKHYNVWMQVIQTIANIDC 904
Score = 38 (18.4 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 100 FVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQ 137
F+ D + + E H N++ V S +GD + Q
Sbjct: 65 FLSSDKENDDHSIMENHKNTTLVTSQPDDSGDKQIKPQ 102
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 515 (186.3 bits), Expect = 3.4e-86, Sum P(4) = 3.4e-86
Identities = 102/234 (43%), Positives = 156/234 (66%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
+PN+I +G D + TLLLTGPNMGGKSTLLR T ++VILAQ+G FVP C L++ D
Sbjct: 994 IPNNIYMGCDKEK--ETTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCELTIVD 1051
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTRLG++D + G+STFLVE + +++L+++T+ SL ILDELGRGTS+FDG AIA +
Sbjct: 1052 KIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAILDELGRGTSSFDGTAIALST 1111
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
Q+ + I CR +F+THYH L +E + +++ HM+ + + E +++FLY+
Sbjct: 1112 LEQISDVIKCRCIFSTHYHLLVEEVKHNTNISNYHMSLSIDDDQE-------KIIFLYKF 1164
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSL 1043
G CP+S+G+ +A +AG+P++++E A +L + E K + ++ SL
Sbjct: 1165 IKGICPKSFGIHIAKLAGLPKEIIELAHEKSLLFENVTDEFCKIIKYKNIIRSL 1218
Score = 256 (95.2 bits), Expect = 3.4e-86, Sum P(4) = 3.4e-86
Identities = 102/374 (27%), Positives = 181/374 (48%)
Query: 351 EQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHLLA-----IKE-GNCGP 403
++LE + + + I R++ + T T + D + + +++ I++ G+
Sbjct: 385 KELEQRNKTSSGPKDKAIKREINEIYTKGTILHDNMLSAETKYIICFHFDDIEDIGDDDN 444
Query: 404 DN---GSVV---YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
+N GS +GF D A + VG NDD S L LL Q+ P E++Y ++ + K
Sbjct: 445 NNNNAGSQTKCNFGFVVSDVATSYISVGYCNDDESRIELRTLLAQLCPAEILYCSKNINK 504
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQH 517
E L F A ELT +V F + + L ++N YF + P KALE +
Sbjct: 505 EV---LSIFKNIPACPELT---SVNSFPNI--IASLDEVNKYFE--NIP--KALEAYKEQ 552
Query: 518 DIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYR--DCLRMD--------------GQ 560
+ A GG I +L L+LD +L+ I Y +++ + + +D G+
Sbjct: 553 NSVICAFGGFIVYLRSLLLDKKILKFCKIEFYDLFKKDNYMVLDATALKHLEILETQSGE 612
Query: 561 TL-----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
T Y++ T+ G R +R W+C PL + + IN RLDVVE+L KN ++ ++ L+
Sbjct: 613 TKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDKINQRLDVVEFLRKNDHILSLIRLKLK 672
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-- 673
KLPD+ERLL ++ +QAS + ++ ++K F + + + ++L+ ++
Sbjct: 673 KLPDIERLLNKIC--IQASQSERGAVFFDNIVNTKLKEFVTFLNAFKEIDNMLIEINSID 730
Query: 674 -EGHIIPSLSRIFK 686
E +IP+ R+F+
Sbjct: 731 SEEDLIPT--RLFE 742
Score = 221 (82.9 bits), Expect = 3.4e-86, Sum P(4) = 3.4e-86
Identities = 54/177 (30%), Positives = 95/177 (53%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPE----ALKKMSA----SQKQYWNVKSQYMD 286
+W+ P IRD N PD P YD T++ PP+ A++ A +Q+W +KS+ D
Sbjct: 257 KWIQPEYIRDINLNAPDHPNYDSSTIWTPPQDHQWAIEYKQAHYTPGMQQFWKIKSKNFD 316
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA I H L+W ++G K +G E + +K++ G
Sbjct: 317 KIIFFKMGRFYEIFYIDACIMHTICGLNW---MNGEQK-PHLGFPEQSLHLYAKKVINSG 372
Query: 345 YKVGRIEQLETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPDAVHLL 394
+KV IEQ+ET ++ + R+ S I R++ + T T + D + + +++
Sbjct: 373 HKVVVIEQMETPKELEQRNKTSSGPKDKAIKREINEIYTKGTILHDNMLSAETKYII 429
Score = 55 (24.4 bits), Expect = 3.4e-86, Sum P(4) = 3.4e-86
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLI 773
+ LF E ++ IS +D L++FA A +S + RP++
Sbjct: 888 IFHLFYEHYEKYISACRLISELDCLQAFAYVALNTSFPLTRPIL 931
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 432 (157.1 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 101/223 (45%), Positives = 131/223 (58%)
Query: 798 HPFALGENGGLPVPNDILLGEDSDDCLPRT-LLLTGPNMGGKSTLLRATCLAVILAQLGC 856
HP G VPND + DC LL+TGPNM GKST +R T L I+AQ+G
Sbjct: 607 HPVVESTVSGGFVPNDTEM-----DCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGS 661
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
FVP + + D +FTR+GA D + +G+STF+VE E A++L A+ SLV+LDE+GRG
Sbjct: 662 FVPASYASVGIIDQVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRG 721
Query: 917 TSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSE 974
TST+DGY+IA AV L R + R LFATHYH LT V H+A
Sbjct: 722 TSTYDGYSIAKAVVEFLHNRGKVGIRALFATHYHQLTALEEKLKRVKNYHIAV------- 774
Query: 975 NYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ ELVFL ++ GA SYG+ VA +AGVP+KV+E A+
Sbjct: 775 --KEDGHELVFLRKIVPGATDRSYGIHVARLAGVPEKVIERAN 815
Score = 324 (119.1 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 126/423 (29%), Positives = 200/423 (47%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ---- 325
M+ + +QY+ K Y D L+FF++G FYE + DA+ KEL+ ITL+ GK R
Sbjct: 5 MTPAMRQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELE--ITLTARGKDRTGERM 62
Query: 326 --VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI ID + +L+ +GYKV EQLE ++AK V+ R +V VVTP T +D
Sbjct: 63 PLAGIPYHAIDTYLPRLINKGYKVAICEQLEDPKKAKG-----VVKRGVVRVVTPGTAID 117
Query: 384 GTIGPDAV--HLLAI--KEGNCGPDNGS--VVYGFAFVDCAALRVWVGTINDDASCAALG 437
++ DA +L+A+ +EG NG + +G +F+D + D + L
Sbjct: 118 SSMFSDASNNYLMAVAGREGGKSGKNGEKEMEFGISFLDISTGEFLTTQFTDSENFDKLL 177
Query: 438 ALLMQVSPKEVI-----YENRGLCKEAQK--ALRKFSAGSAALELTPAMAVTDF----LD 486
+ L ++ P E I Y N L + ++ +++F+ E T F L+
Sbjct: 178 SELARMHPAECILPPSLYGNSELTGKLREHTIVQEFAPEVFGTEEAGEKLKTHFGVATLE 237
Query: 487 ASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV-LRNGDI 545
+KL + Y ++ ++K + D+ S+ ++LD + LRN +I
Sbjct: 238 GMGCQKL-EFAVYSAWAALEYAKTTQ---MRDLTHINTLRTYSNTEFMILDSITLRNLEI 293
Query: 546 LPYKVYRDCLRMDGQTLYLD-SCV-TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
+ K RD D +LY +C T G R L+ W+ PL VE IN RLD +E L ++
Sbjct: 294 V--KNVRD--EGDENSLYRTLNCTRTPMGNRTLKKWLLKPLLSVEKINPRLDAIEELAED 349
Query: 604 SEVVMVVAQYLRKLPDLERLLGR-VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLR 662
S + + +L + D+ERL+GR V A + L KK L + SL++ R
Sbjct: 350 SLLRYDIRDWLSDVRDIERLVGRIVYGNASARDLVAL----KKSLGVVPSLRDSLLEKAR 405
Query: 663 IAM 665
M
Sbjct: 406 FEM 408
Score = 39 (18.8 bits), Expect = 5.9e-35, Sum P(3) = 5.9e-35
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 221 VKNCEEEADTTSKFEWLDPSKIRDANR 247
VKN +E D S + L+ ++ NR
Sbjct: 294 VKNVRDEGDENSLYRTLNCTRTPMGNR 320
Score = 37 (18.1 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 716 NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFA 758
N L+ E + + ++ + E I +DVL S A
Sbjct: 539 NEKAVALEYEIFAEITRTLSARSRELQETAERIGTLDVLASLA 581
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 439 (159.6 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 109/287 (37%), Positives = 153/287 (53%)
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV 810
I + V AS + A+ R + PQ DN L+I G HPF E V
Sbjct: 550 IAAIAELDVIASFAEIAVQRKYVRPQV-------DNSNE-LRISGGRHPFV--EQVNAFV 599
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PND+ C+ LTGPNM GKST LR L ILAQ+G FVP + + + D
Sbjct: 600 PNDLAFTSAERVCV-----LTGPNMAGKSTYLRQNALITILAQMGSFVPADSAHIGVVDR 654
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
+F+R+GA+D I G+STF+VE ETA+++ AT SLVILDE+GRGTST DG +IA AV
Sbjct: 655 VFSRIGASDNIAMGKSTFMVEMMETANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVL 714
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
L + +NC+ +FATHY+ L + S L M C S + E++ +Y++
Sbjct: 715 EYLHDSVNCKTIFATHYNELC-DLESK----LPRMKCY----SIEVKRWRDEVLLMYKIV 765
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQR 1037
G SYG+ A+++G+P+ ++ A+ A SI S + R
Sbjct: 766 PGRGDNSYGIHTAMLSGIPEAIIRRATEIAKEKNLSIENSLSNERIR 812
Score = 285 (105.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 118/394 (29%), Positives = 184/394 (46%)
Query: 273 SQKQYWNVKSQYMDVLLFFKVGKFYELYELDA-EIGHKELDWKITLSGVGKCRQV---GI 328
+ K+Y V+ QY D ++F++VG FYE++ DA E+ H L +T G K + + G+
Sbjct: 8 AMKRYLEVRCQYPDAVVFYRVGDFYEMFFEDAREVSHL-LGLHLTRRGTYKGKDIPMCGV 66
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
S + + KLV G KV EQLET+E+AK R +++ R +V +VTP GT+
Sbjct: 67 PVSSCEVYINKLVKLGRKVAICEQLETAEEAKKRGATAIVRRDVVRLVTP-----GTLTE 121
Query: 389 DAVHLLAIKEGN---C-GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
D +LL E N C P + G A++D + ++ + A+ A+L + L ++
Sbjct: 122 D--NLLVSGENNYLLCVAPGKNEI--GLAWLDISTKKI----VFTSANPASLESYLAKIE 173
Query: 445 PKEVIYENRGLCKEAQKALRK------------FSAGSAALELTPAMAVTD--FLDASEV 490
PKEV+ + + E +K + + F AA EL V F+DA
Sbjct: 174 PKEVLLPD-AIDSELRKVIEQHNIHITRRPNNLFQFDYAANELRGFYNVLQLGFMDARSP 232
Query: 491 KKLVQ---LNGYFNGSSSPWSKALENVMQHDIGFS-ALGGLISHLSRLMLDDVLRNGDIL 546
++V L Y + K LE +++ G+ AL S + L L + G+
Sbjct: 233 CEIVACGALIAYARATQMGELKRLEFPKRYEKGYYLALDA--STIRGLELIESQTPGE-- 288
Query: 547 PYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
L++ QT C T+ GKRLL+S+I PL VE I R D VE+ E+
Sbjct: 289 ----KNSLLQVIDQT-----C-TAGGKRLLKSYIVSPLISVEEIQARQDKVEFFFIQEEL 338
Query: 607 VMVVAQYLRKLPDLERLLGRVKA-RVQASSCIVL 639
V L +PD ER L R+ R + C+ +
Sbjct: 339 RKKVRTELANIPDAERALSRIALNRGEPIDCLAV 372
Score = 64 (27.6 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 30/99 (30%), Positives = 41/99 (41%)
Query: 716 NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
N + L+ E L + E+I AI+ +DV+ SFA A + R + P
Sbjct: 521 NENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVIASFAEIA------VQRKYVRP 574
Query: 776 QSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI 814
Q DN L+I G HPF E VPND+
Sbjct: 575 QV-------DNSNE-LRISGGRHPFV--EQVNAFVPNDL 603
Score = 44 (20.5 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
LQ++ +ENY K + EL +R G S G ++A + + V AS A +
Sbjct: 510 LQNLEAQIAKANENYRKLELEL---FRELCGKILASEGPLKEMIAAIAELDV-IASFAEI 565
Query: 1022 AMKK 1025
A+++
Sbjct: 566 AVQR 569
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 545 (196.9 bits), Expect = 1.8e-62, Sum P(4) = 1.8e-62
Identities = 136/343 (39%), Positives = 203/343 (59%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
+S L E ++ S +S ++ IS +D L S A +S+ G + RP + + K+ ++ +N
Sbjct: 1087 ISFLGEFSVDY-SLFSNFVNKISNLDCLFSLAKVSSLE-GYI-RPQFVKEKKDGGIQIEN 1143
Query: 787 GG-PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G PV++ L + G VPN I L E + C +++++TGPNMGGKS+LLR T
Sbjct: 1144 GRHPVVEA-------ILSGSDGSYVPNTIELRESA--C--KSMIITGPNMGGKSSLLRQT 1192
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L VI+AQ+GCFVP C LS+ D I+TR+GA D I TG+STF +E ET+ +L+ +TQ+
Sbjct: 1193 ALIVIMAQVGCFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEETSDILKNSTQN 1252
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQH 964
+LVILDELGRGTST DG AIAY+ + +VE + C LF THY L + +P V H
Sbjct: 1253 TLVILDELGRGTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLELQYPTQVGNFH 1312
Query: 965 MACAFKSNSENYSKGD-QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
M + + K +++FLY+L GA SYGL +A +AG+P +V+ A + M
Sbjct: 1313 MGYLEEKQDQQLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVIADALKKSNEM 1372
Query: 1024 KKSIGESFKSSEQRSEFSSLHEEWLKTIV---NVSRVDCNSDD 1063
K+SI S+ + + + E +K+I+ N +R NS+D
Sbjct: 1373 KESITRRANLSDGKDQ-QQIENE-IKSIIKNWNSNRTTLNSND 1413
Score = 121 (47.7 bits), Expect = 1.8e-62, Sum P(4) = 1.8e-62
Identities = 35/115 (30%), Positives = 56/115 (48%)
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELD-WKITLSGVGKCRQVGISESG 332
++QY +K + D +L + G Y+ + DAE+ +K L+ + C I
Sbjct: 457 EQQYIAIKKENPDTVLMVECGYKYKFFGEDAEVANKVLNIYSYVAKNFLNC---SIPTQR 513
Query: 333 IDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTI 386
+ + +LV GYKVG +EQ ET+ +A + + RKL V T ST +D I
Sbjct: 514 LFFHLRRLVMAGYKVGIVEQTETAALKAISSSKSQPFERKLTRVYTSSTFIDDDI 568
Score = 118 (46.6 bits), Expect = 1.8e-62, Sum P(4) = 1.8e-62
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 559 GQTLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK----NSE-VVMVVAQ 612
G ++L + T SG R+ +WIC PL +E I R D VE L+ NS +V +++
Sbjct: 808 GSLIWLMNRTSTFSGSRMFINWICKPLNQLELIKERQDAVEELVNGIKTNSPPIVSIISL 867
Query: 613 YLRKLPDLERLLGRVKARVQAS 634
+ +PDL+R L R+ +VQ +
Sbjct: 868 FKSHIPDLQRNLSRIYYKVQCT 889
Score = 37 (18.1 bits), Expect = 1.8e-62, Sum P(4) = 1.8e-62
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 397 KEG-NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+EG + ++ + F V + T D+ + L +L + P E++
Sbjct: 604 EEGIDSSNESSTSTISFVAVSVKTGEIIYDTFKDNVMRSQLETILTHIKPSEIL 657
Score = 37 (18.1 bits), Expect = 1.0e-53, Sum P(4) = 1.0e-53
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 357 EQAKARHTNSVISRKLVNVVTPSTTV 382
++ ++ T + SRK VV P T+
Sbjct: 12 DELESEKTTTTSSRKKAPVVDPKQTL 37
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 412 (150.1 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 97/228 (42%), Positives = 139/228 (60%)
Query: 798 HPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
HP E G V NDI L + R L+TGPNM GKST LR L ILA +G F
Sbjct: 587 HPVV--ERNGKFVANDIDLS-----LMQRVHLITGPNMAGKSTFLRQNALIGILAHIGSF 639
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + + + D +F+R+GA+D I +G STF+VE TETA+++ +AT S VILDE+GRGT
Sbjct: 640 VPAQHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTETAAIINQATDKSFVILDEIGRGT 699
Query: 918 STFDGYAIAYAVFRQLVERIN-CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
T+DG +IA++V Q + +N R +FATHYH L+K + L+++ C F E +
Sbjct: 700 GTYDGLSIAWSVIEQ-IHNVNKSRAIFATHYHELSK-LDRY----LENIKC-FCMKVEEW 752
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ G ++VFL+ + G+ +SYG+ VA +AG PQ V++ A +K
Sbjct: 753 N-G--KVVFLHEIIPGSTNKSYGIHVAKLAGFPQSVLDRAEDLMSKLK 797
Score = 202 (76.2 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 62/186 (33%), Positives = 97/186 (52%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K++ +QY +KSQY + LLF+++G FYEL+ DA + L+ I L+ G G+
Sbjct: 6 KITPIMQQYMMLKSQYKEYLLFYRLGDFYELFFDDAIETSRILN--IVLTKKGNVPMCGV 63
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
+ + +LV GYK+ EQLETSE+AK R +++ R +V +VTP GTI
Sbjct: 64 PFHSSESYLNRLVKLGYKIAICEQLETSEEAKKRGYKALVKRDVVRIVTP-----GTILE 118
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN-DDASCAALGALLMQVSPKE 447
D+ LL KE N +V + +A A L + G L + L +++PKE
Sbjct: 119 DS--LLEAKENNYLSCIVNVDHNYAI---AWLELSTGLFYYHTTELHKLDSDLFRINPKE 173
Query: 448 VIYENR 453
V+ ++
Sbjct: 174 VLISDK 179
Score = 116 (45.9 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 33/100 (33%), Positives = 50/100 (50%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D +T+ G RLL+ + PL IN RLD+VE+ + + + V + LR + D+ER+
Sbjct: 295 IDYTITACGGRLLKRCLSAPLACSHAINRRLDIVEFFVNDRTLCRGVRETLRGIADIERI 354
Query: 624 LGRVKA-RVQASSCIVLPLIGKK--VLKQQVKVFGSLVKG 660
L R+K + L L K VL + F S V G
Sbjct: 355 LTRIKVGKCSPKDLYALKLTLDKIFVLLDLLHKFDSSVVG 394
Score = 54 (24.1 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTA 761
+L+ + L IE A + + HAI+ ID+L SFA A
Sbjct: 524 NLEVKIFGQLCTCIIEVADKITMTAHAIAEIDMLTSFAELA 564
Score = 38 (18.4 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK 628
+G++ V+E + ++ + A + +L L+R L +K
Sbjct: 703 DGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDRYLENIK 743
Score = 37 (18.1 bits), Expect = 1.6e-42, Sum P(4) = 1.6e-42
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 412 FAFVDCAALR 421
F F+D AALR
Sbjct: 266 FMFIDAAALR 275
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 481 (174.4 bits), Expect = 1.3e-59, Sum P(3) = 1.3e-59
Identities = 116/320 (36%), Positives = 172/320 (53%)
Query: 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
+E F E + +H ++ +D + S A A G RP + Q + V ++ PV
Sbjct: 811 LEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTV--QEERKIVIKNGRHPV 866
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+ + LGE VPN+ L EDS+ R +++TGPNMGGKS+ ++ L I
Sbjct: 867 IDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGKSSYIKQVALITI 914
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E + + D IFTR+GA D I G+STF+ E T+TA +++KAT SLVIL
Sbjct: 915 MAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATSQSLVIL 974
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH-VTLQHMACAF 969
DELGRGTST DG AIAYA + + LF THY P+ + ++ H V HM
Sbjct: 975 DELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLV 1034
Query: 970 KSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ G E V FLY++T G SYGL VA +A VP ++++ A+H + ++
Sbjct: 1035 SEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELE 1094
Query: 1025 KSIGESFKSSEQRSEFSSLH 1044
I K + ++ ++H
Sbjct: 1095 GLINTKRKRLKYFAKLWTMH 1114
Score = 134 (52.2 bits), Expect = 1.3e-59, Sum P(3) = 1.3e-59
Identities = 40/114 (35%), Positives = 58/114 (50%)
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVT 569
LE ++ F L + ++ + LRN +IL + D ++ G L+ LD T
Sbjct: 515 LEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT--D-MKTKGSLLWVLDHTKT 569
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
S G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+ER
Sbjct: 570 SFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIER 623
Score = 133 (51.9 bits), Expect = 1.3e-59, Sum P(3) = 1.3e-59
Identities = 38/114 (33%), Positives = 58/114 (50%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +K Q+ D +L + G Y + DAEI +EL+ L I +
Sbjct: 235 QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFV 292
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
V +LVA+GYKVG ++Q ET+ +A + +S+ SRKL + T ST + + P
Sbjct: 293 HVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNP 346
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 347 (127.2 bits), Expect = 1.7e-58, Sum P(4) = 1.7e-58
Identities = 101/343 (29%), Positives = 166/343 (48%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLI----- 773
+ +L+ + IL + + + +++ + C+ + T M+ G M RP+I
Sbjct: 802 IEELEEQLKEILSNFCV---TVFRDIVAELDCLISISHACFT--MADGVMCRPVIKFAKN 856
Query: 774 -------LPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV-PNDILLGEDSDDCLP 825
L Q +NP + Q L +K + + LG G+ PN ++L +
Sbjct: 857 QKETFFYLKQGRNPNLIQ------LDLKQVPNDIILGNIAGMNAQPNIMILTGPNMGGKS 910
Query: 826 RTLLL--TGPNMGGKSTLLRATCLAVILAQL--GCFVPCEMCVLSLADTIFTRLGATDRI 881
TL L + R ++ QL GC+VP E C SL D IFTR+GA D++
Sbjct: 911 TTLRLFCLSAILAQIGIYFRNYQNFKLILQLKQGCYVPAEQCEFSLVDRIFTRIGAGDKL 970
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
+ G+STF +E E + + T +S+ I DELGRGTSTFDG AIA+ + + +E+I R
Sbjct: 971 IEGKSTFYIEMEEVKNSIMYGTYNSIAIFDELGRGTSTFDGVAIAFGILKYFIEKIQSRC 1030
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
+FATH+ L E + ++ HM + +N SK +L+F Y+L G S+G+
Sbjct: 1031 IFATHFFLLINELRFYKEISFYHMEYYY----DNKSK---KLIFKYKLKQGNAESSFGID 1083
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQR-SEFSSL 1043
+A + G+ Q V+ A L + S+ + +Q +F+ L
Sbjct: 1084 LAKIVGIEQSVLNLAQKKQLEFENSLEYAEVEKQQTIKQFNGL 1126
Score = 282 (104.3 bits), Expect = 1.7e-58, Sum P(4) = 1.7e-58
Identities = 76/244 (31%), Positives = 127/244 (52%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRP-DDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQ 283
EE+ + KF + R +R+ P +P YD TLYIPP+ K++++ KQYW +K++
Sbjct: 182 EEQLNQIPKFA---QQRYRKDSRQIPFGNPQYDPTTLYIPPQEFSKLTSAMKQYWQIKAK 238
Query: 284 YMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVAR 343
+ D ++ FK+GKFYEL+ DA I + LD IT + K G E ++ KLV
Sbjct: 239 HFDKIILFKMGKFYELFYEDAIIATRLLD--ITFTN--KELHCGFPEKALEKFASKLVQF 294
Query: 344 GYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKEGN 400
GYKV +EQ TS++ T ++ R + ++T T ++ T D +LL I++
Sbjct: 295 GYKVVVVEQ--TSKKT----TTGIVDRDITQIITKGT-INFTFEEQNHDPKYLLVIRQ-K 346
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ G +VY +F ++ VG + DD + L + L P+E++Y+ + +
Sbjct: 347 TNQEFGIIVYE-SFTS----KIQVGLLQDDKTQTRLKSFLCVTKPQEIVYDPGNITSDIL 401
Query: 461 KALR 464
K L+
Sbjct: 402 KILK 405
Score = 123 (48.4 bits), Expect = 1.7e-58, Sum P(4) = 1.7e-58
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY-LRKLPDLE 621
YLD T GKR+L+ W+C PL D+ IN+R D +E + +N+ + QY + + D+E
Sbjct: 541 YLDYTKTPYGKRMLKKWVCSPLIDISAINDRYDAIEDI-QNNLAMKDKFQYGIARYADIE 599
Query: 622 RLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLR 662
RL + ++ + + ++K F +L+ ++
Sbjct: 600 RLCSSIYRYSVKQKHAEKAVMYENISSARLKEFKNLINSMK 640
Score = 40 (19.1 bits), Expect = 1.7e-58, Sum P(4) = 1.7e-58
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 12 QKCSPANKSGAADMSGARKDS-NFTTKQR-NPVGDSSGQPTVSATEDS 57
QK P K+ + ++SG K N + K N D + Q + ++S
Sbjct: 87 QKLQPQAKTSSNNLSGINKSLLNKSKKSTLNQSDDEAEQMNIEEDQNS 134
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 476 (172.6 bits), Expect = 7.6e-58, Sum P(4) = 7.6e-58
Identities = 112/294 (38%), Positives = 161/294 (54%)
Query: 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
+E F E + + ++ +D + S A A G+ RP + Q + + ++ P+
Sbjct: 769 LENFGEHYHTLCKAVDHLATVDCIFSLAKVAKQ--GSYCRPTL--QEEKKIIIKNGRHPM 824
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+ + LGE VPN L +DS+ R +++TGPNMGGKS+ ++ L VI
Sbjct: 825 IDV-------LLGEQDQF-VPNSTNLSQDSE----RVMIITGPNMGGKSSYIKQVALVVI 872
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E + + D IFTR GA D I G STF+ E T+TA ++QKATQ SLVIL
Sbjct: 873 MAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDTAEIIQKATQRSLVIL 932
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH-VTLQHMACAF 969
DELGRGTST DG AIAYA + + LF THY P+ + +P V HM
Sbjct: 933 DELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLV 992
Query: 970 KSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ GD E + FLY++T G SYGL VA +A VP+++++ A+H
Sbjct: 993 NEDGSKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREILQKAAH 1046
Score = 134 (52.2 bits), Expect = 7.6e-58, Sum P(4) = 7.6e-58
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +VK + D +L + G Y + DAEI +EL+ L I +
Sbjct: 193 QYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFV 250
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
V +LVA+GYKVG ++Q ET+ +A + +SV SRKL + T ST + + P
Sbjct: 251 HVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNP 304
Score = 126 (49.4 bits), Expect = 7.6e-58, Sum P(4) = 7.6e-58
Identities = 53/176 (30%), Positives = 81/176 (46%)
Query: 540 LRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV- 597
LRN +IL + D ++ G L+ LD TS G+R L+ W+ PL + IN RLD +
Sbjct: 500 LRNLEILQNQT--D-MKTRGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLRDINARLDAIS 556
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSL 657
+ L S V + LRKLPD+ER L + + ++ L + LK +++
Sbjct: 557 DVLHSESSVFEQIENLLRKLPDVERGLCSIYHKKCSTQEFFLIVKNLCQLKSELQALMPA 616
Query: 658 VKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAID-SDFP 712
V + DLL E +P L +P + ++ K + E D SDFP
Sbjct: 617 VNS-HVQSDLLRARVLE---VPELLSPVEPYLKVLNEQAAKAGDKTELFKDLSDFP 668
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 34/159 (21%), Positives = 62/159 (38%)
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK-----ATQDSLVILDELGRGTST 919
+S T + ++G+T + S F+VE + L++ + L L+ G T
Sbjct: 719 VSCVPTDWVKVGSTKAVSRFHSPFVVENYRRLNQLREQLVLDCNAEWLDFLENFGEHYHT 778
Query: 920 F----DGYAIAYAVFR--QLVERIN-CRLLFATHYHPLTKEFASHPHV-TLQHMACAFKS 971
D A +F ++ ++ + CR + K HP + L F
Sbjct: 779 LCKAVDHLATVDCIFSLAKVAKQGSYCRPTLQEEKKIIIKN-GRHPMIDVLLGEQDQFVP 837
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
NS N S+ + ++ + G SY QVA++ + Q
Sbjct: 838 NSTNLSQDSERVMIITGPNMGG-KSSYIKQVALVVIMAQ 875
Score = 38 (18.4 bits), Expect = 7.6e-58, Sum P(4) = 7.6e-58
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 104 DARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYS 145
D++ AN+++ Q G S F KT + +++ + S+Y+
Sbjct: 151 DSKSQANQKDTQFGPSP---EAFQKTSTCKPFNRR-SKSIYT 188
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 453 (164.5 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 107/293 (36%), Positives = 159/293 (54%)
Query: 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
+E F E + +H ++ ID + S A A RP + Q + + ++ PV
Sbjct: 799 LENFNEHYHTLCKAVHHLATIDCILSLAKVAKQRDYC--RPTL--QEERKILIKNGRHPV 854
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+ + LGE VPN L DS+ R +++TGPNMGGKS+ ++ L +
Sbjct: 855 IDV-------LLGEQDQF-VPNSTDLSGDSE----RVMIITGPNMGGKSSYIKQVALITV 902
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E + + D IFTR+GA D I G+STF+ E T+TA +++KAT SLVIL
Sbjct: 903 MAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEIIRKATPQSLVIL 962
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-EFASHPHVTLQHMACAF 969
DELGRGTST DG AIAYA + + LF THY P+ + E + V HM
Sbjct: 963 DELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYSQQVGNYHMGFLV 1022
Query: 970 KSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ G+++ ++FLY++T G SYGL VA +A VP ++++ A+
Sbjct: 1023 NEDESKQDAGEEDQVPDSVIFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1075
Score = 140 (54.3 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 53/175 (30%), Positives = 82/175 (46%)
Query: 221 VKNCEEEADTTSK---FEWLDPSKIRDANRRRPDDPL-YDKRT--LYIPPEALKKMSASQ 274
V + + ++ T+ K F L PS+ N ++ D +KRT +Y P E
Sbjct: 171 VSSEDSKSQTSQKDKTFSHLGPSQKSYENLQKTSDSKPSNKRTKSIYTPLEL-------- 222
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
QY +K Q D +L + G Y + DAEI +EL+ L I +
Sbjct: 223 -QYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLF 279
Query: 335 DAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
V +LVA+GYKVG ++Q ET+ +A + +S+ SRKL + T ST + + P
Sbjct: 280 VHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSLFSRKLTALYTKSTLIGEDVNP 334
Score = 138 (53.6 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 41/114 (35%), Positives = 58/114 (50%)
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVT 569
LE V+ F L G + ++ + LRN +IL + D ++ G + LD T
Sbjct: 503 LEKVLSKPKNFKQLSGEMEFMT--INGTTLRNLEILQNQT--D-MKTKGSLFWVLDHTKT 557
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
S G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+ER
Sbjct: 558 SFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIER 611
Score = 37 (18.1 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVE 891
+S T + ++G+T + S F+VE
Sbjct: 749 VSCIPTDWVKIGSTKAVSRFHSPFIVE 775
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 431 (156.8 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 120/323 (37%), Positives = 181/323 (56%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAI-SCIDVLRSFA 758
L E I + +Y+N + + L + L+ + +Q A+ S L S
Sbjct: 492 LVNAERFITPELKEYENL-ILNAKERLLEMETGLYEQVLNQLGGFYSALLSNAAALASLD 550
Query: 759 VTASMSSGAMHRPLILP--QSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL 816
V ++ + A+ + P S+N V P+++ +GL + G NDI L
Sbjct: 551 VLSAFAEVAVRNGYVRPLFHSENSLVIHRGRHPMVE-QGLGY--------GSFAANDISL 601
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
++DC + ++LTGPNM GKST L+ T L V++AQ+G +VP E L L D IF+R+G
Sbjct: 602 S--AEDC--QIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAETAELCLTDRIFSRIG 657
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
A + + G+STF+VE ETAS+L AT SL+ILDE+GRGTST+DG AIA AV + +
Sbjct: 658 AREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYDGLAIAQAVVEYIHSQ 717
Query: 937 --INCRLLFATHYHPLTKEFASH-PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
++ + LFATHYH L E A++ P V ++A SE+ +G E+VFL+R+ G
Sbjct: 718 PSLHAKTLFATHYHELV-ELANYLPRVKNYNIAV-----SED--RG--EVVFLHRIVPGG 767
Query: 994 CPESYGLQVAVMAGVPQKVVEAA 1016
+SYG+ VA +AG+P V++ A
Sbjct: 768 VDKSYGIHVAKLAGLPGWVIKRA 790
Score = 247 (92.0 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 101/377 (26%), Positives = 171/377 (45%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
++ ++ +KQY ++K Y + ++FF++G FYE +E DA I +EL+ +T +GK +V
Sbjct: 1 MENITPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI +D+ + +L+ RGYKV EQ+ K T ++ R++ +VTP T V+
Sbjct: 61 PLAGIPYHALDNYLSRLINRGYKVAICEQV-----TKPGETKGLVKRQVTRLVTPGTVVE 115
Query: 384 GTIGPDAVH--LLAI--KEGNCG---PDNGSVVYGFAFVDCAALRVWVGTIND-DASCAA 435
+ + LL++ E +CG D + +G +D L + +N +
Sbjct: 116 PNLLDSKQNNFLLSLYLTEDSCGLAFADISTSEFGCTQLDINGLEAEINRLNPAEIILPK 175
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ 495
+L + + K I + G EA A + L+ L S L
Sbjct: 176 SQSLNLPLHLKATISKLDGYYFEADVARERLLKHFECQNLSAYGCENLPLAVSAAGAL-- 233
Query: 496 LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISH-LSRLMLDDVLRNGDILPYKVYRDC 554
LN Y + K LE + + I S + SH LS L ++ R+ +
Sbjct: 234 LN-YLEETQKSSLKQLERLAAYTI--SDYMQIDSHTLSNL---EIFRSSG-------GNS 280
Query: 555 LRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ G L LD T+ G RLLR ++ PL E I RL V+Y + S +A+
Sbjct: 281 LK--GSLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARASLAKA 338
Query: 614 LRKLPDLERLLGRVKAR 630
L ++ D+ER+ R++ +
Sbjct: 339 LGQIADMERIANRIRQK 355
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 434 (157.8 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 102/242 (42%), Positives = 149/242 (61%)
Query: 788 GPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + + G HP AL + V ND+ L ++ ++ L +++TGPNM GKST +R
Sbjct: 580 GDAIVVTGGRHPVVEALNRSERF-VANDVQL-DNGENQL---VIITGPNMAGKSTFMRQV 634
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L V++AQ G FVP + + + D IFTR+GA+D + G+STF+VE ETA++L+ AT
Sbjct: 635 ALIVLMAQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPR 694
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLV+LDE+GRGTSTFDG +IA+AV L ER + LFATHYH LT E A VT
Sbjct: 695 SLVVLDEIGRGTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELT-ELA----VTRN 749
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
+ K+ + + + +++FL ++ G SYG+QVA +AG+PQ+V+E A +
Sbjct: 750 RV----KNCNVAVKEWNDQVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNL 805
Query: 1024 KK 1025
+K
Sbjct: 806 EK 807
Score = 156 (60.0 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 53/189 (28%), Positives = 92/189 (48%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG----K 322
+ +++ +QY +K+ + D +LFF++G FYE++ DA + LD +T G
Sbjct: 1 MSELTPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGAD 60
Query: 323 CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
G+ + KLV G KV EQ+E + K ++ R++V VVTP +
Sbjct: 61 IPLCGVPFHSAAPYIAKLVEAGEKVAICEQVEDPKSVKG-----IVKREVVKVVTPGLVI 115
Query: 383 DG-TIGP-DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
D ++ P + +LL++ G PD +G A++D + V T D A A A +
Sbjct: 116 DAESLSPKENNYLLSLFPG---PDR----WGVAYLDLSTGDFRV-TETDSADAA--WAEV 165
Query: 441 MQVSPKEVI 449
V+P+E++
Sbjct: 166 ACVNPREIL 174
Score = 134 (52.2 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 40/109 (36%), Positives = 56/109 (51%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT+ G R L+ WI +PL +E IN RLD VE L+ ++E V L + DLERL
Sbjct: 297 LDRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLERL 356
Query: 624 LGRVK-ARVQASSCIVL--PLIG-KKVLKQQVKVFGSLVKGLRIAMDLL 668
GR+ A A + L L+ ++ +L+ LR +DLL
Sbjct: 357 NGRISLASASAKDLVALRASLVRLPSLIALLTPAASTLLARLRDGIDLL 405
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 434 (157.8 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 102/242 (42%), Positives = 149/242 (61%)
Query: 788 GPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + + G HP AL + V ND+ L ++ ++ L +++TGPNM GKST +R
Sbjct: 580 GDAIVVTGGRHPVVEALNRSERF-VANDVQL-DNGENQL---VIITGPNMAGKSTFMRQV 634
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L V++AQ G FVP + + + D IFTR+GA+D + G+STF+VE ETA++L+ AT
Sbjct: 635 ALIVLMAQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPR 694
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLV+LDE+GRGTSTFDG +IA+AV L ER + LFATHYH LT E A VT
Sbjct: 695 SLVVLDEIGRGTSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELT-ELA----VTRN 749
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
+ K+ + + + +++FL ++ G SYG+QVA +AG+PQ+V+E A +
Sbjct: 750 RV----KNCNVAVKEWNDQVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNL 805
Query: 1024 KK 1025
+K
Sbjct: 806 EK 807
Score = 156 (60.0 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 53/189 (28%), Positives = 92/189 (48%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG----K 322
+ +++ +QY +K+ + D +LFF++G FYE++ DA + LD +T G
Sbjct: 1 MSELTPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGAD 60
Query: 323 CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
G+ + KLV G KV EQ+E + K ++ R++V VVTP +
Sbjct: 61 IPLCGVPFHSAAPYIAKLVEAGEKVAICEQVEDPKSVKG-----IVKREVVKVVTPGLVI 115
Query: 383 DG-TIGP-DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
D ++ P + +LL++ G PD +G A++D + V T D A A A +
Sbjct: 116 DAESLSPKENNYLLSLFPG---PDR----WGVAYLDLSTGDFRV-TETDSADAA--WAEV 165
Query: 441 MQVSPKEVI 449
V+P+E++
Sbjct: 166 ACVNPREIL 174
Score = 134 (52.2 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 40/109 (36%), Positives = 56/109 (51%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT+ G R L+ WI +PL +E IN RLD VE L+ ++E V L + DLERL
Sbjct: 297 LDRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLERL 356
Query: 624 LGRVK-ARVQASSCIVL--PLIG-KKVLKQQVKVFGSLVKGLRIAMDLL 668
GR+ A A + L L+ ++ +L+ LR +DLL
Sbjct: 357 NGRISLASASAKDLVALRASLVRLPSLIALLTPAASTLLARLRDGIDLL 405
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 459 (166.6 bits), Expect = 4.0e-57, Sum P(3) = 4.0e-57
Identities = 110/325 (33%), Positives = 175/325 (53%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V + + + +L++L + +++ +V I+ +D+ S A + +P+++ +
Sbjct: 585 VLEYEIQLYYVLVDLVCKYSNEIKQVSSVIANLDISTSLAKISKQRRYI--KPILVNNNN 642
Query: 779 NP----AVRQDNGGP---VLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLL 830
N V DN +L IK HP EN + ND+ L + DD L+
Sbjct: 643 NNNNNIVVDNDNNDNDRLILDIKDGRHPTV--ENSTTEFIGNDLQLNKGIDDA--NLWLI 698
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNMGGKST LR L +++AQ+G FVP + + D IF+R+G++D + +STF+V
Sbjct: 699 TGPNMGGKSTFLRQNALIILMAQMGSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMV 758
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E ETAS+L+KAT S VI+DE+GRGTST DG +IA +V L + CR LFATHYH L
Sbjct: 759 EMVETASILKKATNRSFVIMDEVGRGTSTLDGISIAQSVVEYLNQVNRCRTLFATHYHEL 818
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
TK PH+ +A + + E++F +++ G +SYG+ A MAG+P
Sbjct: 819 TKNLDETPHIKCYCLAI---------QEDEDEILFTHKIVPGMSNKSYGIFCAKMAGIPN 869
Query: 1011 KVVEAASHAALAMKKSIGESFKSSE 1035
V+E + ++ + +F ++
Sbjct: 870 SVLERSKSILFELESNNKLNFNKNK 894
Score = 147 (56.8 bits), Expect = 4.0e-57, Sum P(3) = 4.0e-57
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ-----VGIS 329
+QY K +Y + +LFF++G FYE+++ DA+I L +T GK R G+
Sbjct: 2 EQYSGFKKKYPNEILFFRLGDFYEMFDEDAKIASNLLGITLTSRKQGKNRNREIPMCGVP 61
Query: 330 ESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
+ + KLV G V +Q+E S +AK +I+R++V ++TP T
Sbjct: 62 SHSAEIHIAKLVKLGKSVAICDQVEDSNEAK--EGRRIINRQIVRIITPGT 110
Score = 112 (44.5 bits), Expect = 4.0e-57, Sum P(3) = 4.0e-57
Identities = 41/144 (28%), Positives = 69/144 (47%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D +T G RLL S I P +++ IN+RL+ +E+ N E+ V +L D+ER
Sbjct: 346 IDKTITPQGGRLLFSRIQSPSLELKEINSRLNQLEFFYNNMELTNEVRSFLNAGSDIERC 405
Query: 624 LGRVKARVQASSCIVLPLIGKKV-----LKQ--QVKVFGSLVKGLRIAMDLLMLMHKEGH 676
+ R+K + S L IG + LK+ Q K+ + +++ L+L ++ H
Sbjct: 406 IQRLK--INKSGPRDLHTIGSTLQSIFHLKESLQSKLLTMKINEQTESINQLLLKIQQTH 463
Query: 677 IIPSLSR-----IFKPPIFDGSDG 695
+ P L+ I PP +DG
Sbjct: 464 LTPLLNHLSAALIDSPPSISVNDG 487
Score = 44 (20.5 bits), Expect = 4.2e-12, Sum P(3) = 4.2e-12
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIA-YAVFRQLV 934
SV++ + D +++ DE+ R S Y I Y V LV
Sbjct: 562 SVMRFKSSDLIILEDEINRAASKVLEYEIQLYYVLVDLV 600
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 439 (159.6 bits), Expect = 7.0e-57, Sum P(3) = 7.0e-57
Identities = 106/247 (42%), Positives = 149/247 (60%)
Query: 789 PVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
PVL+IK HP G VPND+ L + ++ L LL+TGPNM GKST +R L
Sbjct: 560 PVLEIKNGRHPVVEKSVGRANFVPNDLYL-DTKENSL---LLITGPNMAGKSTYMRQAAL 615
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
VILAQ+G FVP E + L D I TR+GATD + G+STF+VE E ++L+ AT SL
Sbjct: 616 IVILAQIGSFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSL 675
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
++LDE+GRGTST+DG +IA A+ + ++I R LF+THYH LT P V ++
Sbjct: 676 ILLDEVGRGTSTYDGISIAEAIIEYIQKKIKARTLFSTHYHELTGLEGEIPGV--KNFTV 733
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ KG+ E+ FL+++ G +SYG+ VA +AG+P++VVE A + LA +
Sbjct: 734 LVQE------KGE-EVKFLHKVVPGKTDKSYGIYVAKLAGLPREVVERA-YEILARFEDK 785
Query: 1028 GESFKSS 1034
G K +
Sbjct: 786 GLKVKDT 792
Score = 186 (70.5 bits), Expect = 7.0e-57, Sum P(3) = 7.0e-57
Identities = 55/193 (28%), Positives = 96/193 (49%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
KQY ++K QY D LLFF++G FYEL+ DA I +EL+ +T G+ +V G+
Sbjct: 8 KQYLDIKKQYSDCLLFFRLGDFYELFFEDAVIASRELEIVLTGRDAGQEERVPMCGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ KL++RGYKV EQ+E ++AK ++ R++ + TP T + +
Sbjct: 68 SAQGYIAKLLSRGYKVAICEQVEDPKKAKG-----LVKREVTKIYTPGTVTEEFFLQEKT 122
Query: 392 --HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+++A+ E +G + A V L + T D+ L + + +++P E +
Sbjct: 123 NNYIIALAE-----KDGLIALAVAEVSTGYLGI---TSVDEGKIEVLASEIRRLAPTEAV 174
Query: 450 ----YENRGLCKE 458
++N L K+
Sbjct: 175 VLKNFKNNFLLKD 187
Score = 90 (36.7 bits), Expect = 7.0e-57, Sum P(3) = 7.0e-57
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D T+ G R L+ + PL +++ I +RLD VE L+ + E+ + + L+ L DLERL
Sbjct: 274 IDFTQTAMGARKLKEELTKPLLNLKAIADRLDAVEILVNDYELRENLRENLKNLYDLERL 333
Score = 43 (20.2 bits), Expect = 3.9e-37, Sum P(2) = 3.9e-37
Identities = 26/98 (26%), Positives = 42/98 (42%)
Query: 212 RLLQDSVAGVKNCEEEADTTSKFEWL-DPSKIRDANRRRPDDPLYDKRTLYIP------- 263
+L ++ + N + AD E L + ++R+ N R LYD L I
Sbjct: 285 KLKEELTKPLLNLKAIADRLDAVEILVNDYELRE-NLRENLKNLYDLERLSIKLVCGTIN 343
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
P+ L K+ S Q W++K+ V K F E+Y+
Sbjct: 344 PKDLIKIKQSLPQIWHIKNSINHVKN--KSVLFAEIYK 379
Score = 39 (18.8 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK 628
+GI+ ++EY+ K + + + + +L LE + VK
Sbjct: 689 DGISIAEAIIEYIQKKIKARTLFSTHYHELTGLEGEIPGVK 729
Score = 37 (18.1 bits), Expect = 2.4e-51, Sum P(3) = 2.4e-51
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 584 LKDVEGINNRLDV-----VEYLMK----NSEVVMVVAQYLRKL-PDLERLLGR 626
LKD+ GI N L+ +E K + E ++ YL+++ P + + G+
Sbjct: 185 LKDITGIVNYLEKLPAEEIEIAFKGPEASKEAYKILISYLKRIEPAVLSIFGQ 237
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 402 (146.6 bits), Expect = 1.5e-56, Sum P(3) = 1.5e-56
Identities = 86/188 (45%), Positives = 116/188 (61%)
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
LLTGPNM GKST LR L +LAQ+G FVP + + D +F+R+GA D + G STF
Sbjct: 658 LLTGPNMAGKSTFLRQNALIALLAQIGSFVPATRARIGIIDRLFSRVGAADDLARGRSTF 717
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+VE ETA++L +A + +LVILDE+GRGT+TFDG +IA+A L E CR LFATHYH
Sbjct: 718 MVEMVETAAILNQAGERALVILDEIGRGTATFDGLSIAWAAIEHLHESNRCRTLFATHYH 777
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT A P + F + + + +VFL+ + G+ SYG+QVA +AG+
Sbjct: 778 ELTALSAKLPRM--------FNA-TVRVKEWQGNVVFLHEVLPGSADRSYGIQVAKLAGL 828
Query: 1009 PQKVVEAA 1016
P V+ A
Sbjct: 829 PPAVITRA 836
Score = 217 (81.4 bits), Expect = 1.5e-56, Sum P(3) = 1.5e-56
Identities = 60/191 (31%), Positives = 97/191 (50%)
Query: 265 EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR 324
EA +++ +QY +K+ + +LLF+++G FYEL+ DAEI K L +T G +
Sbjct: 21 EAAARVTPMMEQYLEIKAAHQGLLLFYRMGDFYELFFEDAEIASKTLGIVLTKRGKHQGA 80
Query: 325 QV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
+ G+ +D + +L++ G++V EQ E AKAR SV+ R +V +VTP T
Sbjct: 81 DIPMCGVPVERAEDYLHRLISAGHRVAVCEQTEDPAAAKARGNKSVVRRGVVRLVTPGTL 140
Query: 382 VDGTIGPDAV---HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
+ T+ DA +LLAI G +G A++D + V + S L A
Sbjct: 141 TEDTL-LDARANNYLLAIARARSS--TGGDRFGLAWIDISTAEFMV----TECSGGELAA 193
Query: 439 LLMQVSPKEVI 449
L +++P E I
Sbjct: 194 TLARINPNEAI 204
Score = 99 (39.9 bits), Expect = 1.5e-56, Sum P(3) = 1.5e-56
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D VTS+G RLL + PL D I RLD V + +S + LR PD+ R
Sbjct: 323 IDCTVTSAGSRLLAQRLAAPLTDAPAIARRLDAVGAFVADSAAREDIRSILRGAPDMSRA 382
Query: 624 LGRV 627
L R+
Sbjct: 383 LARL 386
Score = 38 (18.4 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 22/104 (21%), Positives = 46/104 (44%)
Query: 696 LDKFLTQFEAAIDSDFPDYQNHDVTDL---DAETLSILIELFIEKASQWSEVIHAISCID 752
++++L + +AA Y+ D +L DAE S + + + K + + +
Sbjct: 30 MEQYL-EIKAAHQGLLLFYRMGDFYELFFEDAEIASKTLGIVLTKRGKHQGADIPMCGVP 88
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
V R+ + S A HR + Q+++PA + G + +G+
Sbjct: 89 VERAEDYLHRLIS-AGHRVAVCEQTEDPAAAKARGNKSVVRRGV 131
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 427 (155.4 bits), Expect = 2.0e-56, Sum P(2) = 2.0e-56
Identities = 112/298 (37%), Positives = 167/298 (56%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+ + + L++ E Q + I+ +D L SFA A ++ RP+I +
Sbjct: 514 LETQLYTDLVQALTEFIPQIQINANQIARLDCLLSFANVARENNYI--RPVI-EDNDVLD 570
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
+RQ PV++ K L P +GE + ND++L D + +++TGPNM GKS L
Sbjct: 571 IRQGRH-PVIE-KQL--P--IGEKY---IANDVML----DSASQQIIIITGPNMAGKSAL 617
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
LR T L +LAQ+G FVP E + L D IFTR+GA+D I GESTF+VE E A +L
Sbjct: 618 LRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNN 677
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKEFASHPH 959
+ SLV+ DELGRGTST+DG +IA+A+ + E + R LFATHYH L + S
Sbjct: 678 VSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHELNEMEKSFKR 737
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ K+ + + + D +++FL +L G S+G+ VA MAG+P+ +V+ A+
Sbjct: 738 I---------KNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRAN 786
Score = 240 (89.5 bits), Expect = 2.0e-56, Sum P(2) = 2.0e-56
Identities = 98/378 (25%), Positives = 169/378 (44%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT--LSGVGKCRQV-GISES 331
KQ+ ++K+++ D ++ F+ G FYE Y DA + + L +T +G GK ++ G
Sbjct: 3 KQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFPHH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D + KL+ G +V +QLE + K ++ R + +VTP +++ +
Sbjct: 63 ALDTYLPKLIRAGKRVAICDQLEDPKLTK-----KLVKRGITELVTPGVSINDNV----- 112
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGT-INDDASCAALGALLMQVSPKEVIY 450
L KE N +V +G A A L + G + + + LL PKE+++
Sbjct: 113 --LNYKENNF---LAAVHFGKASCGVAFLDISTGEFLTAEGPFDYVDKLLNNFGPKEILF 167
Query: 451 EN-RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL--VQLNGYFNG--SSS 505
E + L E + F+ T + A L E K L + NG +S
Sbjct: 168 ERGKRLMFEGNFGSKFFTFELDDWVFTESTAREKLLKHFETKNLKGFGVEHLKNGIIASG 227
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYL- 564
+ L + QH + +G + S L+R+ D +R + DG + L
Sbjct: 228 AILQYL-TMTQH----TQIGHITS-LARIEEDKYVRLDKFTVRSLELIGSMNDGGSSLLN 281
Query: 565 --DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
D ++ G RLL+ W+ PLKD + IN+RL+VVEY + + ++ + L + DLER
Sbjct: 282 VIDRTISPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLER 341
Query: 623 LLGRVKA-RVQASSCIVL 639
++ +V RV + L
Sbjct: 342 IISKVAVGRVSPREVVQL 359
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 439 (159.6 bits), Expect = 5.8e-56, Sum P(3) = 5.8e-56
Identities = 104/280 (37%), Positives = 153/280 (54%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ +H ++ +D + S A A G RP + Q + V ++ PV+ + L
Sbjct: 746 KAVHHLATVDCIFSLAKVAKQ--GDYCRPSL--QEERKIVIKNGRHPVIDV-------LL 794
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
GE VPN L DS+ R +++TGPNMGGKS+ ++ L I+AQ+G +VP E
Sbjct: 795 GEQDQY-VPNSTNLSGDSE----RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEE 849
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
+ + D IFTR+GA D I G+STF+ E +TA ++++AT SLVILDELGRGTST DG
Sbjct: 850 ATIGIVDGIFTRMGAADNIYKGQSTFMEELMDTAEIIRQATSQSLVILDELGRGTSTHDG 909
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH-PHVTLQHMACAFKSNSENYSKGDQ 981
AIAYA + + LF THY P+ + S+ V HM + G++
Sbjct: 910 IAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYLQEVGNYHMGFLVNEDENKEDPGEE 969
Query: 982 EL----VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ FLY++T G SYGL VA +A VP ++++ A+
Sbjct: 970 PVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1009
Score = 138 (53.6 bits), Expect = 5.8e-56, Sum P(3) = 5.8e-56
Identities = 41/114 (35%), Positives = 58/114 (50%)
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVT 569
LE V+ F G + ++ + LRN +IL + D ++ G L+ LD T
Sbjct: 438 LEKVLSKPKNFKQFSGEMEFMT--INGTTLRNLEILQNQT--D-MKTKGSLLWVLDHTKT 492
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
S G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+ER
Sbjct: 493 SFGRRKLKKWVVQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIER 546
Score = 137 (53.3 bits), Expect = 5.8e-56, Sum P(3) = 5.8e-56
Identities = 47/148 (31%), Positives = 70/148 (47%)
Query: 244 DANRRRPDDPLYDKRT--LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
D ++ PD +KRT +Y P E QY +K Q D +L + G Y +
Sbjct: 133 DDLQKTPDPKPSNKRTKSIYTPLEL---------QYIELKQQQKDAILCVECGYKYRFFG 183
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAK 360
DAEI +EL+ L I + V +LVA+GYKVG ++Q ET+ +A
Sbjct: 184 EDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAV 241
Query: 361 ARHTNSVISRKLVNVVTPSTTVDGTIGP 388
+ +S+ SRKL + T ST + + P
Sbjct: 242 GDNKSSLFSRKLTALYTKSTLIGEDVNP 269
Score = 40 (19.1 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
F+ HYH L K A H T+ C F S ++ +GD
Sbjct: 737 FSAHYHSLCK--AVHHLATVD---CIF-SLAKVAKQGD 768
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 415 (151.1 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 98/252 (38%), Positives = 147/252 (58%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L+IKG HP V NDI + + R +++TGPNM GKST +R L +
Sbjct: 554 LEIKGGRHPVVERFTQNF-VENDIYMDNEK-----RFVVITGPNMSGKSTFIRQVGLISL 607
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G FVP + +L + D IFTR+GA D + G STFLVE E A +L K+T SLV+L
Sbjct: 608 MAQIGSFVPAQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLL 667
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH-PHVTLQHMACAF 969
DE+GRGTST DG +IA+A+ +L++R C++LFATH+ LT E H P V Q+
Sbjct: 668 DEVGRGTSTQDGVSIAWAISEELIKR-GCKVLFATHFTELT-ELEKHFPQV--QNKTILV 723
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
K +N ++F +++ G SYG++VA +AG+P +V+ A ++++
Sbjct: 724 KEEGKN-------VIFTHKVVDGVADRSYGIEVAKIAGIPDRVINRAYEI---LERNFKN 773
Query: 1030 SFKSSEQRSEFS 1041
+ K + + + FS
Sbjct: 774 NTKKNGKSNRFS 785
Score = 157 (60.3 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 41/128 (32%), Positives = 70/128 (54%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K++ +QY +K QY D +L F++G FYE + DA+I K L+ I L+ GI
Sbjct: 2 KVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLN--IVLTRRQDAPMAGI 59
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
++ ++KLV GYKV +Q+E E +K++ +I R++ VVTP + V+
Sbjct: 60 PYHALNTYLKKLVEAGYKVAICDQME--EPSKSK---KLIRREVTRVVTPGSIVEDEFLS 114
Query: 389 DAVHLLAI 396
+ + +A+
Sbjct: 115 ETNNYMAV 122
Score = 128 (50.1 bits), Expect = 2.6e-55, Sum P(3) = 2.6e-55
Identities = 82/328 (25%), Positives = 141/328 (42%)
Query: 364 TNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW 423
+ +I R++ VVTP + V+ + + +A+ + G Y F D + V
Sbjct: 90 SKKLIRREVTRVVTPGSIVEDEFLSETNNYMAV----VSEEKGR--YCTVFCDVSTGEVL 143
Query: 424 VGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA-LRKFSAGSAALELTPAMAVT 482
V +D+ L L S ++I C E K+ L++ G T ++
Sbjct: 144 VHESSDEQETLDL---LKNYSISQII------CPEHLKSSLKERFPGV----YTETISEW 190
Query: 483 DFLDASEVKKLVQLNGYFNGSSSPWS-KALENVMQHDIGFSALGG--------LISHLSR 533
F D EV+K L + SP + KAL ++++ + ++ + LIS
Sbjct: 191 YFSDLEEVEKAYNLKDIHHFELSPLALKALAALIKY-VKYTMIAEDLNLKPPLLISQRDY 249
Query: 534 LMLDDV-LRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGI 590
++LD + N ++P D G+ L+ L++ T G RLL+ WI HPL D + I
Sbjct: 250 MILDSATVENLSLIP----GD----RGKNLFDVLNNTETPMGARLLKKWILHPLVDRKQI 301
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIV-----LPLIGKK 645
RL VE L+ + + + L + D+ER++ RV+ +V L +I K
Sbjct: 302 EERLKAVERLVNDRVSLEEMRNLLSNVRDVERIVSRVEYNRSVPRDLVALRETLEIIPK- 360
Query: 646 VLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
L + + FG + K L L+ L+ K
Sbjct: 361 -LNEVLSTFG-VFKKLAFPEGLVDLLRK 386
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 422 (153.6 bits), Expect = 3.4e-55, Sum P(3) = 3.4e-55
Identities = 94/209 (44%), Positives = 125/209 (59%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN I L D CL L+TGPNMGGKS+ ++ L+ I+AQ GCFVP + +L + D
Sbjct: 741 VPNHIHLSSDGVRCL----LITGPNMGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFD 796
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+I R+G++D + STF+VE ET VL KAT+ S+VI+DELGRGTST DG AI+YAV
Sbjct: 797 SILIRMGSSDNLSVNMSTFMVEMLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAV 856
Query: 930 FRQLVERINCRLLFATHYHPL-TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYR 988
L + I LLF TH+ L E + HM KS + + Q + FLY+
Sbjct: 857 LHYLNQYIKSYLLFVTHFPSLGILERRFEGQLRCFHMGY-LKSKEDFETSVSQSISFLYK 915
Query: 989 LTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L G +SYGL VA MAG+P ++ A+
Sbjct: 916 LVPGVASKSYGLNVARMAGIPFSILSRAT 944
Score = 162 (62.1 bits), Expect = 3.4e-55, Sum P(3) = 3.4e-55
Identities = 91/377 (24%), Positives = 150/377 (39%)
Query: 189 ILEDNLNIGXXXXXXXXXXXXRMRLLQDSVAGVKNCEEEADTTSKFEWLDPS-KIRDANR 247
IL DNL+ G + LL+++V KN +E + +S + P I+ R
Sbjct: 17 ILSDNLHEGAISEDMVALSGPAIELLENNVGSSKNSYQEDEGSSSIDENAPLISIKRKRR 76
Query: 248 RRPDDPLYDK----RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELD 303
R +K R P + + ++QY +K Y + +L +VG + + D
Sbjct: 77 IRTVKSTSNKELVQRKASKPTKQKSVFTPLEQQYLELKKNYQETILAIEVGYKFRFFGKD 136
Query: 304 AEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKAR 362
A+I + L I+ + ID +E+L+ G KV + Q ET+ ++ +
Sbjct: 137 AKIASEVLG--ISCYFEHNFLNASVPSYRIDYHLERLINFGLKVAVVRQTETAALKSTSS 194
Query: 363 HTNSVISRKLVNVVTPSTTVDGTIG--PDAVH--LLAIKEGNCGPDN---GSVVYGFAFV 415
N++ R++ V+T TT+D + H L A + C DN G V
Sbjct: 195 SRNTLFDRRVARVLTKGTTLDDSFFRFEQTQHGTLQASQFILCVADNVDKSKAKSGRVQV 254
Query: 416 DCAALRVWVGT-----INDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
A+++ GT DD + L L P E+IY N+ L E+ L +
Sbjct: 255 GLIAIQLSSGTTVYDHFQDDFLRSELQTRLSHFQPCELIYSNK-LSSESVALLNHY---- 309
Query: 471 AALELTPAMAV-TDFLDASEVK-KLVQLNGYFNGSS-SPWSKALENVMQ-----HDIGFS 522
+ E T V +VK L L +F+ SK +E M+ H +
Sbjct: 310 VSTEKTCGRVVRVQHAVQQDVKLALENLQDFFSSKCIMSGSKIIELHMEKVKSLHSLSII 369
Query: 523 ALGGLISHLSRLMLDDV 539
L IS+L L+D+
Sbjct: 370 CLDMAISYLMEFSLEDL 386
Score = 122 (48.0 bits), Expect = 3.4e-55, Sum P(3) = 3.4e-55
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV-VMVVAQYLRKLPDLER 622
LD T G+R+L+ W+ PL D E I RLD VE L NS V + + L +LPDLE+
Sbjct: 431 LDRTYTRFGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEK 490
Query: 623 LLGRV 627
L R+
Sbjct: 491 GLSRI 495
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 442 (160.7 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 99/235 (42%), Positives = 135/235 (57%)
Query: 793 IKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
IK HP LGE VPN L DS+ R +++TGPNMGGKS+ ++ L
Sbjct: 814 IKNGRHPMIDVLLGEQDQF-VPNSTSLS-DSE----RVMIITGPNMGGKSSYIKQVTLVT 867
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +VP E + + D IFTR+GA D I G STF+ + T+TA ++++A+ SLVI
Sbjct: 868 IMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVI 927
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH-VTLQHMACA 968
LDELGRGTST DG AIAYA + + LF THY P+ + +P V HM
Sbjct: 928 LDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYPEQVGNYHMGFL 987
Query: 969 FKSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ GD E + FLY++T G SYGL VA +A VP++V++ A+H
Sbjct: 988 VNEDESKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAH 1042
Score = 138 (53.6 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 39/114 (34%), Positives = 59/114 (51%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY ++K Q+ D +L + G Y + DAEI +EL+ L I +
Sbjct: 193 QYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFV 250
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
V +LVA+GYKVG ++Q ET+ +A + +SV SRKL + T ST + + P
Sbjct: 251 HVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNP 304
Score = 122 (48.0 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQ 612
++ G L+ LD TS G+R L++W+ PL + IN RLD V + L S V +
Sbjct: 512 MKTKGSLLWVLDHTKTSFGRRKLKNWVTQPLLKLREINARLDAVSDVLHSESSVFEQIEN 571
Query: 613 YLRKLPDLER 622
LRKLPD+ER
Sbjct: 572 LLRKLPDVER 581
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 410 (149.4 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 86/207 (41%), Positives = 132/207 (63%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN+ ++G++ + LL+TGPNM GKST +R L I+AQ+GCFVP + VL + D
Sbjct: 585 VPNNCMMGDNR-----QMLLITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFD 639
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+GA D +++G+STF+VE E + + AT++SL++ DE+GRGTST+DG A+A A+
Sbjct: 640 QIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAI 699
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+ + I + LF+THYH LT P + H+ +E Y+ G +VFL+++
Sbjct: 700 IEYVHDHIGAKTLFSTHYHELTVLEDKLPQLKNVHV------RAEEYN-GT--VVFLHQI 750
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAA 1016
GA +SYG+ VA +A +P ++ A
Sbjct: 751 KEGAADKSYGIHVAQLAELPGDLIARA 777
Score = 174 (66.3 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 52/177 (29%), Positives = 87/177 (49%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+++ D LFF++G FYE++ DA+ +EL+ +T G ++ G+
Sbjct: 9 QQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+E+L+ +GYKV EQ E + AK V+ R++V ++TP T +DG ++
Sbjct: 69 SASAYIEQLIKKGYKVAICEQTEDPKAAKG-----VVKREVVQLITPGTVMDGKGIHESE 123
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA---LRVWVGTINDDAS-CAALGALLMQVS 444
+ C NG YG A D L V + + D S ++GA + VS
Sbjct: 124 NNFIASVSACS--NG---YGLALSDLTTGENLAVLIERLEDVISEIYSVGAREIVVS 175
Score = 113 (44.8 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 37/93 (39%), Positives = 49/93 (52%)
Query: 559 GQTLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+L D T+ G RLL+ WI PL V I R ++VE LM + + + L+++
Sbjct: 273 GSLLWLLDETKTAMGGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFEREDLRERLKEV 332
Query: 618 PDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQ 649
DLERL GRV V A I L K+ LKQ
Sbjct: 333 YDLERLAGRVAFGNVNARDLIQL----KESLKQ 361
Score = 38 (18.4 bits), Expect = 8.5e-47, Sum P(3) = 8.5e-47
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 586 DVEGINNRLDVVEYLMKNSEVV 607
+VE I R VVE +M + E V
Sbjct: 564 EVEVIEGRHPVVEKVMDSQEYV 585
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 417 (151.9 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 89/191 (46%), Positives = 127/191 (66%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP E + D IFTR+GA+D + +G
Sbjct: 615 RMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDLASGR 674
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT++SLV++DE+GRGTST+DG ++A+A L + I LFAT
Sbjct: 675 STFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEIGAMTLFAT 734
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ P+V L H+A E+ GD + F++ + GA +SYGL VA +
Sbjct: 735 HYFELTEL----PNV-LPHLANVHLDAVEH---GDG-IAFMHAVQEGAASKSYGLAVAGL 785
Query: 1006 AGVPQKVVEAA 1016
AGVP+ V++ A
Sbjct: 786 AGVPKPVIKNA 796
Score = 167 (63.8 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 52/192 (27%), Positives = 95/192 (49%)
Query: 263 PPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK 322
P E+L + +QY +K++ D+LLF+++G FYEL+ DA+ + LD +T G
Sbjct: 8 PSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASA 67
Query: 323 CRQV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPS 379
+ G+ ++ + KLV G V EQ+ +K + RK+V +VTP
Sbjct: 68 GEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGP-----VERKVVRIVTPG 122
Query: 380 TTVDGTIGPDAV-HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
T D + + V +L+A + NG +G+A +D + R +++ + + A
Sbjct: 123 TVTDEALLSERVDNLIAAIYHH----NGR--FGYATMDITSGRF---QLSEPQTEEEMAA 173
Query: 439 LLMQVSPKEVIY 450
L + SP+E+++
Sbjct: 174 ELQRTSPRELLF 185
Score = 117 (46.2 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD C T G R+L+ WI P++D +N RLD + L K + + + L+++ D+ER+
Sbjct: 300 LDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITEL-KETALYGELHPVLKQIGDIERI 358
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 359 LARLALR 365
Score = 37 (18.1 bits), Expect = 1.5e-54, Sum P(4) = 1.5e-54
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTA 761
L+ + L +L + Q ++ +++ +DVL++ A A
Sbjct: 530 LEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERA 569
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 498 (180.4 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 119/327 (36%), Positives = 184/327 (56%)
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
+I + +KA ++ +I A I+ +DV S + A+ SSG RP +LP
Sbjct: 549 VISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATSSGIYTRPNLLPL--------- 599
Query: 786 NGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G L++K HP G N P +PND++L D C R ++LTG NMGGKST LR+
Sbjct: 600 -GSKRLELKQCRHPVIEG-NSEKPFIPNDVVL----DKC--RLIILTGANMGGKSTYLRS 651
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L+++LAQ+G FVPC +S+ D IFTR+GA+D+ G STF+ E + +++LQ+AT+
Sbjct: 652 AALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATK 711
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
+S V++DELGRGTSTFDG+ IA A+ + ++ RI C +FATH+H + K A P
Sbjct: 712 NSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGK-LAEQPGAVALQ 770
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
M ++N E+ LY++ G S+GLQVA M G+ + V+ A+ ++
Sbjct: 771 MGVQIENN---------EIHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQLLEGLE 821
Query: 1025 KSIGESFKSSEQRSEFSSLHEEWLKTI 1051
K + K ++ E + + + L +
Sbjct: 822 KKLVIDSKKKKELLESADIRQAILSLV 848
Score = 145 (56.1 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 104/465 (22%), Positives = 190/465 (40%)
Query: 269 KMSASQKQYWNV-KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC-RQV 326
K AS K + KS+ + + F G+++ +Y DA + I S V C +
Sbjct: 5 KDEASDKALLKILKSKSPNTIAIFSRGEYFSVYGDDATF----VATNIFKSDV--CVKTF 58
Query: 327 GISESGIDDAVEKLVARG-Y-KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
+S V RG Y KV R E + + +++ K+ +P TVD
Sbjct: 59 TLSTDNSQQMKYISVNRGQYEKVVR-ETIVLLRCSVELYSSEQGEWKMTKRGSPGNTVDF 117
Query: 384 -GTIG-PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
IG D +LAI + G D+ V A+ D +R+ + D S + +
Sbjct: 118 EQEIGVSDQAPILAIYI-HPGDDDNRVTL-CAW-DAGNVRIVISEYIDTPSFSQTEQCIF 174
Query: 442 QVSPKEVIYENRG-LCKEAQKALRKFSAGSA--ALELTPAMAVTDFLDASEVKKLVQLNG 498
+ P E I N G + +A+K F+ +L P +D +++ + +
Sbjct: 175 GLCPTEYILVNEGSVAPKAKKIASMFTRMEVHNKQQLKPKSQWSDVIESVHLDYKDEAEK 234
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLR 556
N + + L + + S + ++ + +++D L Y +
Sbjct: 235 Q-NENIKECLQILHSNAADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQLNYNYLEK 293
Query: 557 MDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
+ TLY L+ C T G++LLR W+ PL ++ IN RLD+VE L +N Q +
Sbjct: 294 SNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFEN--------QTI 345
Query: 615 RKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKE 674
R ++L + AR+ S + L+ K L+ + + + + M L+ L E
Sbjct: 346 R-----QKLRDSILARMPDCSQLARRLMRKCTLQDLNRFYQAATLLETVEMQLIQLSEAE 400
Query: 675 GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDV 719
PS++R+ K I + +++F + D D+ + +N ++
Sbjct: 401 -QFAPSINRLLKSEITEILKKVERFQVLCDEFFDFDY-EKENKEI 443
Score = 39 (18.8 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 735 IEKASQWSEVIHAI 748
++ SQWS+VI ++
Sbjct: 211 LKPKSQWSDVIESV 224
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 498 (180.4 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 119/327 (36%), Positives = 184/327 (56%)
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
+I + +KA ++ +I A I+ +DV S + A+ SSG RP +LP
Sbjct: 549 VISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATSSGIYTRPNLLPL--------- 599
Query: 786 NGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G L++K HP G N P +PND++L D C R ++LTG NMGGKST LR+
Sbjct: 600 -GSKRLELKQCRHPVIEG-NSEKPFIPNDVVL----DKC--RLIILTGANMGGKSTYLRS 651
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L+++LAQ+G FVPC +S+ D IFTR+GA+D+ G STF+ E + +++LQ+AT+
Sbjct: 652 AALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATK 711
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
+S V++DELGRGTSTFDG+ IA A+ + ++ RI C +FATH+H + K A P
Sbjct: 712 NSFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGK-LAEQPGAVALQ 770
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
M ++N E+ LY++ G S+GLQVA M G+ + V+ A+ ++
Sbjct: 771 MGVQIENN---------EIHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQLLEGLE 821
Query: 1025 KSIGESFKSSEQRSEFSSLHEEWLKTI 1051
K + K ++ E + + + L +
Sbjct: 822 KKLVIDSKKKKELLESADIRQAILSLV 848
Score = 145 (56.1 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 104/465 (22%), Positives = 190/465 (40%)
Query: 269 KMSASQKQYWNV-KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC-RQV 326
K AS K + KS+ + + F G+++ +Y DA + I S V C +
Sbjct: 5 KDEASDKALLKILKSKSPNTIAIFSRGEYFSVYGDDATF----VATNIFKSDV--CVKTF 58
Query: 327 GISESGIDDAVEKLVARG-Y-KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
+S V RG Y KV R E + + +++ K+ +P TVD
Sbjct: 59 TLSTDNSQQMKYISVNRGQYEKVVR-ETIVLLRCSVELYSSEQGEWKMTKRGSPGNTVDF 117
Query: 384 -GTIG-PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
IG D +LAI + G D+ V A+ D +R+ + D S + +
Sbjct: 118 EQEIGVSDQAPILAIYI-HPGDDDNRVTL-CAW-DAGNVRIVISEYIDTPSFSQTEQCIF 174
Query: 442 QVSPKEVIYENRG-LCKEAQKALRKFSAGSA--ALELTPAMAVTDFLDASEVKKLVQLNG 498
+ P E I N G + +A+K F+ +L P +D +++ + +
Sbjct: 175 GLCPTEYILVNEGSVAPKAKKIASMFTRMEVHNKQQLKPKSQWSDVIESVHLDYKDEAEK 234
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLR 556
N + + L + + S + ++ + +++D L Y +
Sbjct: 235 Q-NENIKECLQILHSNAADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQLNYNYLEK 293
Query: 557 MDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
+ TLY L+ C T G++LLR W+ PL ++ IN RLD+VE L +N Q +
Sbjct: 294 SNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFEN--------QTI 345
Query: 615 RKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKE 674
R ++L + AR+ S + L+ K L+ + + + + M L+ L E
Sbjct: 346 R-----QKLRDSILARMPDCSQLARRLMRKCTLQDLNRFYQAATLLETVEMQLIQLSEAE 400
Query: 675 GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDV 719
PS++R+ K I + +++F + D D+ + +N ++
Sbjct: 401 -QFAPSINRLLKSEITEILKKVERFQVLCDEFFDFDY-EKENKEI 443
Score = 39 (18.8 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 735 IEKASQWSEVIHAI 748
++ SQWS+VI ++
Sbjct: 211 LKPKSQWSDVIESV 224
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 432 (157.1 bits), Expect = 2.3e-54, Sum P(4) = 2.3e-54
Identities = 86/193 (44%), Positives = 126/193 (65%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R L ++A +GCFVP E + D IFTR+GA+D + +G
Sbjct: 612 RMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGR 671
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT SLV++DE+GRGTST+DG ++A++ L +++ LFAT
Sbjct: 672 STFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQQVGAMTLFAT 731
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ P + M+ + + + D + F++ + GA +SYGLQVA +
Sbjct: 732 HYFELTQL----PEL----MSGVYNVHLDAIEHEDT-IAFMHAVQEGAASKSYGLQVAAL 782
Query: 1006 AGVPQKVVEAASH 1018
AGVP +V++AA H
Sbjct: 783 AGVPARVIKAAKH 795
Score = 168 (64.2 bits), Expect = 2.3e-54, Sum P(4) = 2.3e-54
Identities = 54/194 (27%), Positives = 94/194 (48%)
Query: 262 IPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---S 318
I + L+K + +QY ++K+++ D+LLF+++G FYEL+ DA+ + L +T S
Sbjct: 4 IDTDDLEKHTPMMRQYLSMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKS 63
Query: 319 GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTP 378
G GI ++ + KLV G V EQ+ +K + RK+V +VTP
Sbjct: 64 GGDPIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSKGP-----VERKVVRIVTP 118
Query: 379 STTVDGTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
T D + + L A+ +G G +G+A +D ++ R + + S L
Sbjct: 119 GTLTDEALLQERQDNLLAAVYQGKVG-------FGYATLDVSSGRFVIAELETKES---L 168
Query: 437 GALLMQVSPKEVIY 450
A L + +P E++Y
Sbjct: 169 EAELQRTNPVEILY 182
Score = 92 (37.4 bits), Expect = 2.3e-54, Sum P(4) = 2.3e-54
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD+ T+ G R+L+ WI PL+D I R V L++ + V + + L+ L D+ER+
Sbjct: 297 LDNTATAMGSRMLQRWIHQPLRDHALILARQTAVNELLETA-VHESLHEQLKALGDIERI 355
Query: 624 LGRVKAR 630
+ R+ R
Sbjct: 356 MARLALR 362
Score = 42 (19.8 bits), Expect = 2.3e-54, Sum P(4) = 2.3e-54
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTA 761
L+ + L +L + K + + A + +DVL +FA A
Sbjct: 527 LEKQLWDELFDLILPKLHELQDFARAAAELDVLSNFAERA 566
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 475 (172.3 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 129/358 (36%), Positives = 189/358 (52%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L + F E S+ I ++ ID L S A A G RP++ +
Sbjct: 259 VLDCGAEWLRFL-DHFSEHYHTVSKAIGHLATIDCLFSLAQAAKQ--GDYCRPVVKDNQQ 315
Query: 779 NPAVRQDNGG-PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGG 837
++ NG PV+ + LGE VPN L D + R +++TGPNMGG
Sbjct: 316 EIIIK--NGRHPVIDV-------LLGEQDQY-VPNTTNLSRDGE----RVMIITGPNMGG 361
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KS+ ++ L ++AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA
Sbjct: 362 KSSYIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKGRSTFMEELTDTAE 421
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS- 956
++++AT SLVILDELGRGTST DG AIAYA + + LF THY P E +
Sbjct: 422 IIRRATSRSLVILDELGRGTSTHDGIAIAYATLEHFITDVESLTLFVTHY-PSVCELENV 480
Query: 957 HP-HVTLQHMACAFKSNSENYSKGDQE------LVFLYRLTSGACPESYGLQVAVMAGVP 1009
+P V HMA KG +E + FLY++T G SYGL VA +A +P
Sbjct: 481 YPGKVGNYHMAFLVNKEESAEQKGSEEEENPEFVTFLYQITKGVTARSYGLNVAKLADIP 540
Query: 1010 QKVVEAASHAALAMKKSIG------ESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNS 1061
+++++ A+H + +++ + +SF + + ++F L ++W + I VS D NS
Sbjct: 541 EEILKKAAHKSKELERLVNVKRKKLKSFAEAWKINDFQEL-QKW-RNIFQVSS-DSNS 595
Score = 123 (48.4 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 31/70 (44%), Positives = 38/70 (54%)
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQ 612
L+ G L+ LD TS G+R L+ W+ PL IN RLD V E L+ S V +
Sbjct: 13 LKTKGSLLWVLDHTKTSFGRRRLKKWVIQPLMKCSEINARLDAVSEILLSESSVFGQIQN 72
Query: 613 YLRKLPDLER 622
L KLPDLER
Sbjct: 73 LLCKLPDLER 82
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 453 (164.5 bits), Expect = 4.0e-54, Sum P(4) = 4.0e-54
Identities = 112/285 (39%), Positives = 161/285 (56%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P++KI+ HP +PND L E R L++TGPNMGGKST +R T L
Sbjct: 584 PIIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYMRQTALI 638
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
+LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L AT++SLV
Sbjct: 639 TLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLV 698
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DE+GRGTSTFDG ++AYA L ++ LFATHY LT AS TLQ A
Sbjct: 699 LMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTA-LAS----TLQ----A 749
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
K+ + + +++++FL+ L G +SYGLQVA +AG+P+ V++ A ++ +
Sbjct: 750 VKNVHLDAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEELENPVI 809
Query: 1029 ESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCL 1073
+ +Q F + L T ++ D N A D L+ L
Sbjct: 810 SETQQPQQNELFLPIENPVL-TQLDKLNPD-NLTPKQALDILYQL 852
Score = 133 (51.9 bits), Expect = 4.0e-54, Sum P(4) = 4.0e-54
Identities = 35/111 (31%), Positives = 63/111 (56%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ ITL+ G+ I +G+
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLN--ITLTARGQSAGHAIPMAGVP 79
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVD 383
AVE + + ++G E + EQ T+ ++R++ ++TP T D
Sbjct: 80 YHAVENYLTKLVRLG--ESVVICEQIGDPATSKGPVAREVTRIITPGTVSD 128
Score = 100 (40.3 bits), Expect = 4.0e-54, Sum P(4) = 4.0e-54
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T G RLLR WI PL+D + R + V L++ + + LR + DLER+
Sbjct: 300 LDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY-ENLRHIGDLERI 358
Query: 624 LGRVKAR 630
+ R+ R
Sbjct: 359 VARIALR 365
Score = 43 (20.2 bits), Expect = 4.0e-54, Sum P(4) = 4.0e-54
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTA 761
+ E L++ IEK + AI+ +DVL + A A
Sbjct: 532 EKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERA 570
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 427 (155.4 bits), Expect = 7.3e-54, Sum P(4) = 7.3e-54
Identities = 120/338 (35%), Positives = 183/338 (54%)
Query: 698 KFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSF 757
+F T + +++ + NH + +++ S L +E+A++ + ++ +D+ +
Sbjct: 510 RFTTVELSELETRILNAGNHAL-EIEKRLYSSLSGAVLEQAARLNIAARGLAELDLATAL 568
Query: 758 AVTASMSSGAMHRPLILPQSKNPAVRQDNGG--PVLKIKGLWHPFALGENGGLP-VPNDI 814
A A + RP + P S+ A+ GG PV++ H AL GG P V ND
Sbjct: 569 ADLARAENWC--RPSVDP-SRAFAIE---GGRHPVVE-----H--ALRRQGGDPFVANDC 615
Query: 815 LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR 874
L D + LLTGPNM GKST LR L +LAQ+G +VP + + + +F+R
Sbjct: 616 DLSADKGAAIR---LLTGPNMAGKSTYLRQNALITLLAQIGSYVPADSAHIGVVSQLFSR 672
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+GA+D + G STF+VE ETA++L +A +LVILDE+GRGT+T+DG +IA+A L
Sbjct: 673 VGASDDLARGRSTFMVEMVETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLEHLH 732
Query: 935 ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGAC 994
CR LFATHYH LT A+ V +++ A K + + E++FL+ + GA
Sbjct: 733 ATNRCRALFATHYHELTALAATLDGV--ENLTVAVK-------EWEGEVIFLHEVRKGAA 783
Query: 995 PESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
SYG+QVA +AG+P VV A ++KS E K
Sbjct: 784 DRSYGVQVAQLAGLPPSVVARARVVLDQLEKSEREGGK 821
Score = 167 (63.8 bits), Expect = 7.3e-54, Sum P(4) = 7.3e-54
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY +K Y D LLF+++G FYE++ DA + LD +T G + + G+
Sbjct: 10 QYLEIKEAYADALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHEGEDIPMCGVPVHA 69
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
+ + L+ +G++V EQ+E+ +AK R + SV+ R +V +VTP T + +
Sbjct: 70 AEGYLLTLIRKGFRVAVCEQMESPAEAKKRGSKSVVRRDVVRLVTPGTLTEDAL 123
Score = 96 (38.9 bits), Expect = 7.3e-54, Sum P(4) = 7.3e-54
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D VT G RLL + P ++++ I+ RL +++ + +S + + LRK PDL+R
Sbjct: 296 IDRTVTPGGARLLEQRLGSPSRNLDVIHARLSALDFCIDHSTLAADLRAALRKTPDLDRA 355
Query: 624 LGRV 627
L R+
Sbjct: 356 LSRL 359
Score = 43 (20.2 bits), Expect = 4.9e-41, Sum P(3) = 4.9e-41
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 328 ISESGIDD-AVEKLVARGYKVGRIEQLETSEQAKARHTNSVI 368
+ ++ D A EK + YKVG +E T +A+ ++I
Sbjct: 201 LGKASFDSMAAEKRLCELYKVGSLEGFGTFARAELSAMGALI 242
Score = 41 (19.5 bits), Expect = 7.3e-54, Sum P(4) = 7.3e-54
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 451 ENRGLCKEAQK--ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
E R LC E K +L F + A EL+ A+ D+LD ++ KL L P
Sbjct: 212 EKR-LC-ELYKVGSLEGFGTFARA-ELSAMGALIDYLDITQKGKLPLLQ-------PPVQ 261
Query: 509 KALENVMQHD 518
+A + VMQ D
Sbjct: 262 EAEDRVMQID 271
Score = 38 (18.4 bits), Expect = 7.9e-12, Sum P(4) = 7.9e-12
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 1004 VMAGVPQKVVEAASHAALAMK 1024
V+AG+ QK E A+L +K
Sbjct: 451 VIAGMQQKYAEHTGIASLKIK 471
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 450 (163.5 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 98/218 (44%), Positives = 134/218 (61%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPNDI L D R LL+TGPNMGGKS+ +R L I+ Q+G +VP + L + D
Sbjct: 859 VPNDINL----DSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLD 914
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+FTR+GA D ++ GESTF+VE +ETA +L++AT SLVILDELGRGTST DG AIA AV
Sbjct: 915 AVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAV 974
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+V I LF THY L+ S P L+++ F SE+ + D+++ FLY +
Sbjct: 975 LDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRF---SESGTGADEDITFLYEI 1031
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G SYGL VA +A +P ++E A + +++ I
Sbjct: 1032 GEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKI 1069
Score = 139 (54.0 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 65/245 (26%), Positives = 110/245 (44%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ +KQ +K ++MD +L +VG + + DA I KEL D +
Sbjct: 194 KLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYDEHPSE 253
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + I + V++LVA G+KVG + QLET+ +A + N+ RKL NV
Sbjct: 254 AHLDRFASASIPVQRLHVHVKRLVAAGHKVGVVRQLETAALKAAGDNRNAPFVRKLTNVY 313
Query: 377 TPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAF-VDCAALRVWVGTINDDASCAA 435
T ST +D D L EG+ +G+ G+ + R W G ND+
Sbjct: 314 TKSTYID-----DIESL----EGSTAGASGASATGYILCITETNARGW-G--NDEK--VH 359
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPA-MAVTDFLDASEVKKLV 494
+G + +Q + +++Y+ E + + L + P M + L + +KLV
Sbjct: 360 VGIVAVQPTTGDIVYD------EFDDGFMRSEIETRLLHIAPCEMLIVGELSKA-TEKLV 412
Query: 495 Q-LNG 498
Q L+G
Sbjct: 413 QHLSG 417
Score = 95 (38.5 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 539 VLRNGDILP-YKVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
+L NG+ L ++Y++ + +L+ LD T G+R+LR W+ PL D + +R+
Sbjct: 514 MLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRV 573
Query: 595 DVVEYLMKNSEVVMV--VAQYLRKLP-DLERLLGRV 627
+ VE L VVMV + L K+ DLE+ L R+
Sbjct: 574 NAVEELKDFRNVVMVERIKGLLGKIKHDLEKGLIRI 609
Score = 48 (22.0 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 2 QRQQSIHSFFQKCSPANKSGAADMSGAR--KDSNFTTKQRNPVGDSSGQPTVSATEDS-S 58
++Q +I SFF K A K ++ A DS T K + P T+ + S
Sbjct: 18 RKQPTISSFFTKKPQAPKQSTSNEGPAPIDNDSEITDKLAEDDEEDIVAPVPKRTKSNGS 77
Query: 59 LEIRGTDTPPEK 70
L + +P K
Sbjct: 78 LTVNRPQSPKAK 89
Score = 42 (19.8 bits), Expect = 3.6e-43, Sum P(4) = 3.6e-43
Identities = 37/194 (19%), Positives = 68/194 (35%)
Query: 384 GTIGPDAV-HLLAIKEGNC-GPDNGSVVY-GFAFVDCAALRVWVGTINDDASCAALGALL 440
G G A ++L I E N G N V+ G V + +D + + L
Sbjct: 331 GASGASATGYILCITETNARGWGNDEKVHVGIVAVQPTTGDIVYDEFDDGFMRSEIETRL 390
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGS-------AALELTPAMAVTDFLDASEVKKL 493
+ ++P E++ L K +K ++ S +E P S V
Sbjct: 391 LHIAPCEMLIVGE-LSKATEKLVQHLSGSKMNVFGDKVRVERAPKAKTAAAESHSHVSSF 449
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFS-----ALGGLISHLSRLMLDDVLRNGDILPY 548
+ + + N++Q +G L +I H++ L+ VL+ +
Sbjct: 450 YAEK--MKSADAADDEVASNLLQKVLGLPDQVTICLSAMIKHMTEYGLEHVLQLTKYFQH 507
Query: 549 KVYRDCLRMDGQTL 562
R + ++G TL
Sbjct: 508 FSSRSHMLLNGNTL 521
Score = 41 (19.5 bits), Expect = 1.7e-52, Sum P(4) = 1.7e-52
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 55 EDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSL 92
E +S+E ++ P+ + P G KA G GG L
Sbjct: 161 ETTSIEEAAEGDEDDETPQPVQPKG-KA--GKKGGGKL 195
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 450 (163.5 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 98/218 (44%), Positives = 134/218 (61%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPNDI L D R LL+TGPNMGGKS+ +R L I+ Q+G +VP + L + D
Sbjct: 859 VPNDINL----DSSKTRALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLD 914
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+FTR+GA D ++ GESTF+VE +ETA +L++AT SLVILDELGRGTST DG AIA AV
Sbjct: 915 AVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAV 974
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+V I LF THY L+ S P L+++ F SE+ + D+++ FLY +
Sbjct: 975 LDYMVRSIRSLTLFITHYQHLSAMVHSFPDGELRNVHMRF---SESGTGADEDITFLYEI 1031
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G SYGL VA +A +P ++E A + +++ I
Sbjct: 1032 GEGVAHRSYGLNVARLANLPAPLLEMAKQKSAELEEKI 1069
Score = 139 (54.0 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 65/245 (26%), Positives = 110/245 (44%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ +KQ +K ++MD +L +VG + + DA I KEL D +
Sbjct: 194 KLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYDEHPSE 253
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + I + V++LVA G+KVG + QLET+ +A + N+ RKL NV
Sbjct: 254 AHLDRFASASIPVQRLHVHVKRLVAAGHKVGVVRQLETAALKAAGDNRNAPFVRKLTNVY 313
Query: 377 TPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAF-VDCAALRVWVGTINDDASCAA 435
T ST +D D L EG+ +G+ G+ + R W G ND+
Sbjct: 314 TKSTYID-----DIESL----EGSTAGASGASATGYILCITETNARGW-G--NDEK--VH 359
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPA-MAVTDFLDASEVKKLV 494
+G + +Q + +++Y+ E + + L + P M + L + +KLV
Sbjct: 360 VGIVAVQPTTGDIVYD------EFDDGFMRSEIETRLLHIAPCEMLIVGELSKA-TEKLV 412
Query: 495 Q-LNG 498
Q L+G
Sbjct: 413 QHLSG 417
Score = 95 (38.5 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 539 VLRNGDILP-YKVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
+L NG+ L ++Y++ + +L+ LD T G+R+LR W+ PL D + +R+
Sbjct: 514 MLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRV 573
Query: 595 DVVEYLMKNSEVVMV--VAQYLRKLP-DLERLLGRV 627
+ VE L VVMV + L K+ DLE+ L R+
Sbjct: 574 NAVEELKDFRNVVMVERIKGLLGKIKHDLEKGLIRI 609
Score = 48 (22.0 bits), Expect = 3.2e-53, Sum P(4) = 3.2e-53
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 2 QRQQSIHSFFQKCSPANKSGAADMSGAR--KDSNFTTKQRNPVGDSSGQPTVSATEDS-S 58
++Q +I SFF K A K ++ A DS T K + P T+ + S
Sbjct: 18 RKQPTISSFFTKKPQAPKQSTSNEGPAPIDNDSEITDKLAEDDEEDIVAPVPKRTKSNGS 77
Query: 59 LEIRGTDTPPEK 70
L + +P K
Sbjct: 78 LTVNRPQSPKAK 89
Score = 42 (19.8 bits), Expect = 3.6e-43, Sum P(4) = 3.6e-43
Identities = 37/194 (19%), Positives = 68/194 (35%)
Query: 384 GTIGPDAV-HLLAIKEGNC-GPDNGSVVY-GFAFVDCAALRVWVGTINDDASCAALGALL 440
G G A ++L I E N G N V+ G V + +D + + L
Sbjct: 331 GASGASATGYILCITETNARGWGNDEKVHVGIVAVQPTTGDIVYDEFDDGFMRSEIETRL 390
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGS-------AALELTPAMAVTDFLDASEVKKL 493
+ ++P E++ L K +K ++ S +E P S V
Sbjct: 391 LHIAPCEMLIVGE-LSKATEKLVQHLSGSKMNVFGDKVRVERAPKAKTAAAESHSHVSSF 449
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFS-----ALGGLISHLSRLMLDDVLRNGDILPY 548
+ + + N++Q +G L +I H++ L+ VL+ +
Sbjct: 450 YAEK--MKSADAADDEVASNLLQKVLGLPDQVTICLSAMIKHMTEYGLEHVLQLTKYFQH 507
Query: 549 KVYRDCLRMDGQTL 562
R + ++G TL
Sbjct: 508 FSSRSHMLLNGNTL 521
Score = 41 (19.5 bits), Expect = 1.7e-52, Sum P(4) = 1.7e-52
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 55 EDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSL 92
E +S+E ++ P+ + P G KA G GG L
Sbjct: 161 ETTSIEEAAEGDEDDETPQPVQPKG-KA--GKKGGGKL 195
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 471 (170.9 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 118/344 (34%), Positives = 187/344 (54%)
Query: 692 GSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCI 751
G+ L +F T + ++ ++ DA ++L + ++ + + +++ +
Sbjct: 789 GTKKLSRFHTPEVVRLIAERDQHKEALAAACDAAFKAMLASI-ADQYQPLRDAVSSLATL 847
Query: 752 DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVP 811
D L SFA A++ + +P+ILP S +P P + + G HP A +P
Sbjct: 848 DCLLSFAQVAALPGYS--KPIILPDS-HP--------PTIAVAGGRHPIAEHTLPSGYIP 896
Query: 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871
L + P L+TGPNMGGKS+ +RA L V+LAQ+G FVP + L+L+D I
Sbjct: 897 FSTTLSSPA----PLAHLVTGPNMGGKSSFVRALALLVLLAQVGSFVPADSLRLTLSDAI 952
Query: 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931
+TR+GA+D + GESTF+VE ETA++L+ AT SLV+LDELGRGTST DG AIA+AV
Sbjct: 953 YTRMGASDNLFAGESTFMVEVGETAAILRTATPRSLVLLDELGRGTSTHDGAAIAHAVLD 1012
Query: 932 QLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE--------L 983
+V C LF THY L + ++++ F S+ ++ GD++ +
Sbjct: 1013 HVVRNTRCLTLFITHYQSLARVAEGLGTGLVRNVHMRFTSSRDDNDDGDKDQDDDVGENI 1072
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
FLY + G SYGL VA +A +P+K++E A+ + M++ +
Sbjct: 1073 TFLYEVADGVAHRSYGLNVARLARIPRKILEVAARKSRKMEEDV 1116
Score = 118 (46.6 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 55/208 (26%), Positives = 92/208 (44%)
Query: 263 PPEALKKMSASQK------QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL----- 311
PP+ KK + S K Q+ +K ++MD +L +VG + + DA I KEL
Sbjct: 213 PPKGKKKGAKSGKLTPMELQFLEIKRKHMDTVLIVEVGYKFRFFGEDARIAGKELSIVCI 272
Query: 312 ------DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR-HT 364
D + + + + I + ++LVA G+KVG + Q+ET+ KA +
Sbjct: 273 PGKFRYDEHPSEAHLDRFASASIPVHRLPVHAKRLVAAGHKVGVVRQIETAALKKAGDNR 332
Query: 365 NSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWV 424
N+ RKL V T T +D DA + G G +G Y + AA
Sbjct: 333 NAPFVRKLCEVYTKGTYIDEMGEMDA------QTGASGAHSGG--YLLCLTETAAK---- 380
Query: 425 GTINDDASCAALGALLMQVSPKEVIYEN 452
G+ D+ +G + +Q + ++IY++
Sbjct: 381 GSGTDEK--VDVGLVAVQPATGDIIYDS 406
Score = 98 (39.6 bits), Expect = 3.9e-53, Sum P(3) = 3.9e-53
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 542 NGDILP-YKVYRDCL--RMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
NG L +VYR+ G L+ LD T G+R+LR W+ PL D E +++R+ V
Sbjct: 545 NGTTLESLEVYRNSTDHTEKGSLLWALDKTRTRFGQRMLRKWLGRPLLDKERLDDRVAAV 604
Query: 598 EYLMKNSEVVMVVAQYLRKL-----PDLERLLGRV 627
E L +N V + L+KL DLER L R+
Sbjct: 605 EELFENRNGPQV--EKLQKLLSSIKTDLERSLIRI 637
Score = 37 (18.1 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 166 EMNEDVSGPDTPGMHRVVPRLKRILEDNL 194
E+ E+ +GP + +++ +K LE +L
Sbjct: 606 ELFENRNGPQVEKLQKLLSSIKTDLERSL 634
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 468 (169.8 bits), Expect = 5.9e-53, Sum P(3) = 5.9e-53
Identities = 111/338 (32%), Positives = 182/338 (53%)
Query: 728 SILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
S L+ I ++ V +S + DV+ SFA T+S + RP + P R
Sbjct: 593 SALVREIINITLTYTPVFEKLSLVLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSE---R 649
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
+ + ++ + HP ++ + ND+ L D L ++TGPNMGGKST +R
Sbjct: 650 RTH---LISSR---HPVLEMQDDISFISNDVTLESGKGDFL----IITGPNMGGKSTYIR 699
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ ++AQ+GCFVPCE +++ D I R+GA D + G STF+VE ETAS+L+ A+
Sbjct: 700 QVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAGDSQLKGVSTFMVEILETASILKNAS 759
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
++SL+I+DELGRGTST+DG+ +A+A+ + +I C LFATH+H LT+ P+V
Sbjct: 760 KNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNM 819
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
H+ + N + D+++ LY++ G +S+G+ VA + P+K+V+ A A +
Sbjct: 820 HVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANEL 879
Query: 1024 K--KSIGESFKSS--------EQRSEFSSLHEEWLKTI 1051
K+ E K + E +L +EW++ +
Sbjct: 880 DDLKTNNEDLKKAKLSLQEVNEGNIRLKALLKEWIRKV 917
Score = 145 (56.1 bits), Expect = 5.9e-53, Sum P(3) = 5.9e-53
Identities = 31/97 (31%), Positives = 57/97 (58%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV-VMVVAQYLRKLPDLER 622
L+ C T++G RLL W+ PL +++ IN R D+V+YL+ E+ M+ ++YL +PD+ R
Sbjct: 342 LNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELRQMLTSEYLPMIPDIRR 401
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
L ++ R + + K++ + V+VF S ++
Sbjct: 402 LTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
Score = 67 (28.6 bits), Expect = 5.9e-53, Sum P(3) = 5.9e-53
Identities = 35/178 (19%), Positives = 74/178 (41%)
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D+ ++A + +G+ + G AF+D A +V + I D+ + L + L+Q+ KE
Sbjct: 136 DSSIIIASLKVQWNSQDGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKEC 195
Query: 449 IYE----NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504
+ + N E QK + + L + ++F + L +L G S
Sbjct: 196 LVQDLTSNSNSNAEMQKVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALS 252
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL 562
P + + A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 253 LPQKYS-------KLSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAI 302
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 441 (160.3 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 110/274 (40%), Positives = 153/274 (55%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
V ND+ L D+ R L++TGPNMGGKST +R T L V+LA +G FVP C LSL D
Sbjct: 596 VANDLALDADT-----RMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCELSLVD 650
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+G++D + G STF+VE +ETA++L AT SLV++DE+GRGTSTFDG ++A+A
Sbjct: 651 RIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLAWAA 710
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
L R LFATHY LT S P V H+ N ++ ++ +VFL+ +
Sbjct: 711 AEDLA-RTRAFTLFATHYFELTVLPESQPAVANVHL---------NATEHNERIVFLHHV 760
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKKSIGESFKSSEQRSEFSSLHEEWL 1048
G +SYGL VA +AGVP V++ A H S+ S + S + +
Sbjct: 761 LPGPASQSYGLAVAQLAGVPSPVIQRAREHLKRLETTSLPHEVPSQQSGKPASPMQSDLF 820
Query: 1049 KTIVN-----VSRVDCNSDD---DDAYDTLFCLW 1074
++ + +SR+ N DD A D L+ W
Sbjct: 821 ASLPHPVIDELSRI--NPDDISPRQALDLLYA-W 851
Score = 188 (71.2 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 100/379 (26%), Positives = 169/379 (44%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L + + +QY+ +K Q+ D L+F+++G FYEL+ DA+ K LD ITL+ G+
Sbjct: 4 LSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLD--ITLTARGQSGGK 61
Query: 327 GISESGID-DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDG 384
I +GI + E +A+ K+G E + EQ T+ + R++V ++TP T D
Sbjct: 62 AIPMAGIPFHSAEGYLAKLVKLG--ESVAICEQIGDPATSKGPVERQVVRIITPGTVSDE 119
Query: 385 TIGPDAV-HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ + +LLA G+ ++G A +D + R V I L A L ++
Sbjct: 120 ALLDERRDNLLAAILGD------ERLFGLAVLDITSGRFSVQEIK---GWETLLAELERL 170
Query: 444 SPKEVIYEN---RGLCKEAQKALRK-----FSAGSAALELTPAMAVTDFLDASEVKKLVQ 495
+P E++ + +GL E ++ +R+ F SA L D L + L
Sbjct: 171 NPAELLIPDDWPQGLPAEKRRGVRRRAPWDFDRDSAHKSLCQQFGTQD-LKGFGCQNLTL 229
Query: 496 LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL 555
G G ++K + +AL L S L LDD + + D
Sbjct: 230 AIGAA-GCLLAYAKETQR--------TALPHLRS-LRHDRLDDTVILDGASRRNLELDIN 279
Query: 556 RMDGQ--TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
G+ TL +D C T+ RL+ W+ PL+D + R + + L++ +
Sbjct: 280 LSGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLLERYRFENLQP 339
Query: 612 QYLRKLPDLERLLGRVKAR 630
Q L+++ DLER+L R+ R
Sbjct: 340 Q-LKEIGDLERILARIGLR 357
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 375 (137.1 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 86/188 (45%), Positives = 115/188 (61%)
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
L+TGPNM GKST LR L +LA +G FVP E + + D IF+R+GA+D I G STF
Sbjct: 612 LITGPNMAGKSTFLRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSRVGASDNIALGHSTF 671
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+VE ETA++L +AT SLVILDE+GRGT+ DG +IA A + + R + ATHYH
Sbjct: 672 MVEMVETAAILNQATSKSLVILDEIGRGTAINDGLSIALAAIEHIHDVTKSRAICATHYH 731
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
L K +SH +++ F E + KG E+VFL+ L G SYG+ VA +AG
Sbjct: 732 ELPK-LSSH----FENIRF-FCLRIEEW-KG--EVVFLHELIPGISSRSYGIHVAGLAGF 782
Query: 1009 PQKVVEAA 1016
P+ +E A
Sbjct: 783 PKGALERA 790
Score = 193 (73.0 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 56/178 (31%), Positives = 90/178 (50%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +K QY + LL +++G FYEL+ DA I K L+ +T G G+ +
Sbjct: 12 RQYRALKEQYGECLLLYRLGDFYELFFEDAVIASKTLNIVLTKRGTDT-PMCGVPYHSSE 70
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLL 394
+ +LV GYKV EQ+ET+E+A+ R +++ R++ +VTP T V+ + LL
Sbjct: 71 SYIGRLVKSGYKVAVCEQIETAEEARKRSVRALVRREVTRIVTPGTLVEDS-------LL 123
Query: 395 AIKEGN---CGPDNGSVVYGFAFVDCAA--LRVWVGTIND-DASCAALGALLMQVSPK 446
KE N C + G YG A+++ + V + D D+ LG + +S K
Sbjct: 124 DAKENNYLACISNIGER-YGVAWMELSTGLFHVRASKLEDLDSEIQRLGPSELLISDK 180
Score = 115 (45.5 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D VT+ G R+L+ ++ P+ IN R D VE+ + N + V+ + PD+ER+
Sbjct: 296 IDHTVTAMGSRMLKRYLAFPVACHNVINGRQDAVEFFVSNRSLCEVIRGVINGFPDIERI 355
Query: 624 LGRVK 628
L RVK
Sbjct: 356 LTRVK 360
Score = 39 (18.8 bits), Expect = 1.3e-36, Sum P(4) = 1.3e-36
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 52 SATEDSSLEIRGTDTPPEKVP 72
S T + L RGTDTP VP
Sbjct: 45 SKTLNIVLTKRGTDTPMCGVP 65
Score = 38 (18.4 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
DL+A+ L ++ A++ +DVL + A A ++ RP++ +
Sbjct: 525 DLEAQIFKGLCSRIADECQDIGLAAEAVAELDVLTTLAEVAVENNYV--RPIVDDSKQFK 582
Query: 781 AVRQDNGGPVLKI 793
VR + PV+++
Sbjct: 583 IVRGRH--PVVEV 593
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 459 (166.6 bits), Expect = 3.9e-52, Sum P(3) = 3.9e-52
Identities = 117/276 (42%), Positives = 156/276 (56%)
Query: 751 IDVLRS-FAVTASMSS-GAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGL 808
+D LR+ A A + + A+ + + P +R D VL+IK HP
Sbjct: 633 LDRLRATIAAVARIDALAALAEVAVRGRYVQPRLRTDR---VLRIKQGRHPVVERTLSEP 689
Query: 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLA 868
+ NDI D D + L++TGPNM GKST LR L ++AQ+G FVP + + L
Sbjct: 690 FIGNDI----DLDGEQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLV 745
Query: 869 DTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
D IFTR+GA D I TG+STF+VE TETA++L ++T SL+ILDE+GRGTST+DG AIA A
Sbjct: 746 DRIFTRIGAQDDIATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARA 805
Query: 929 VFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
V + + R+ CR LFATHYH L P V HMA + D +VFL
Sbjct: 806 VVEYIHDHPRLGCRTLFATHYHELIALERELPRVRNYHMAAVER---------DGRVVFL 856
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
+ L G SYG+ VA +AG+P +V+ AS A LA
Sbjct: 857 HELRPGGADRSYGIHVAELAGIPPEVIRRAS-ALLA 891
Score = 110 (43.8 bits), Expect = 3.9e-52, Sum P(3) = 3.9e-52
Identities = 38/131 (29%), Positives = 58/131 (44%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS--GVGK---- 322
++ A +QY +K + D +L F+ G FYE ++ DA++ + LD +T V K
Sbjct: 5 ELHAWYRQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPK 64
Query: 323 ------CRQVGISESGIDDAVEKLVARGYKVGRIEQL-ETSEQAKARHTNSVISRKLVNV 375
G+ +D V +L+ARGY+V EQL ET SV + L V
Sbjct: 65 DQQKLYAPMAGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPV 124
Query: 376 VTPSTTVDGTI 386
+ V I
Sbjct: 125 ESSGKMVQRAI 135
Score = 104 (41.7 bits), Expect = 3.9e-52, Sum P(3) = 3.9e-52
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLLR WI PL +E + R V L+ + + V L LPD+ER
Sbjct: 364 LDRTCTAMGARLLRRWITQPLIVIEPLQVRQHAVARLVAETMARLEVRSALADLPDMERA 423
Query: 624 LGRV 627
L R+
Sbjct: 424 LNRI 427
Score = 100 (40.3 bits), Expect = 4.3e-51, Sum P(3) = 4.3e-51
Identities = 37/140 (26%), Positives = 60/140 (42%)
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAK---------------ARHTNSVISRK 371
G+ +D V +L+ARGY+V EQL +E + + ++ R
Sbjct: 75 GMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPVESSGKMVQRA 134
Query: 372 LVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIND 429
+V V+TP T +D + PD +L A+ + G V G A+ D + D
Sbjct: 135 IVRVITPGTVIDPAMLPDRTNNYLAAVIV-----EQGKV--GLAYADLSTGEFAAAEFTD 187
Query: 430 DASCAALGALLMQVSPKEVI 449
+ L A L ++SP EV+
Sbjct: 188 ARALMQLQAELARLSPAEVL 207
Score = 39 (18.8 bits), Expect = 2.4e-45, Sum P(3) = 2.4e-45
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 430 DASCAALGALLMQ--VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA 480
D +C A+GA L++ ++ ++ E + + A R + A LE+ A+A
Sbjct: 365 DRTCTAMGARLLRRWITQPLIVIEPLQVRQHA--VARLVAETMARLEVRSALA 415
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 417 (151.9 bits), Expect = 9.8e-52, Sum P(3) = 9.8e-52
Identities = 86/212 (40%), Positives = 132/212 (62%)
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
NG L VPND ++ E+ D L+TGPNM GKST +R L +++Q+GCFVP V
Sbjct: 585 NGKLYVPNDCIMPENMD-----VFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAV 639
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
L + D IFTR+GA D +++G+STF+VE E + + A++ SL++ DE+GRGTST+DG A
Sbjct: 640 LPVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMA 699
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+A A+ + ++I + LF+THYH LT S + H++ A + N + +V
Sbjct: 700 LAQAIIEHIHDQIGAKTLFSTHYHELTVLEDSLDQLKNVHVS-AIEENGK--------VV 750
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
FL+++ GA +SYG+ VA +A +P ++ A
Sbjct: 751 FLHKIQDGAADKSYGIHVAQLAELPDSLIARA 782
Score = 187 (70.9 bits), Expect = 9.8e-52, Sum P(3) = 9.8e-52
Identities = 106/445 (23%), Positives = 191/445 (42%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK+ Y D LFF++G FYE++ DA EL+ +T G ++ + G+
Sbjct: 9 QQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMC--GVP 66
Query: 335 -DAVEKLVARGYKVG-RIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG-TIGPDAV 391
A + + + + G ++ E E K V+ R++V ++TP T ++G TI
Sbjct: 67 YHAAKNYIEQLVEKGYKVAVCEQVEDPKT--AKGVVRREVVQLITPGTMMEGRTIDEKEN 124
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV---SPKEV 448
+ LA ++GS Y A C L T+ ++ +L++V KE+
Sbjct: 125 NFLAALTHF---EDGS--YALA---CNDLTTGQNTVT--LLTGSVEDILLEVYATGSKEI 174
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL--DASEVKKLVQLNGYFNGSSSP 506
+ ++ E K + + T + L + S+ K + + FN
Sbjct: 175 VVDSSFSKDELNKLTETLKMTISYEDATAIPEGLEHLVKNVSQAKLIKAVGRLFNYVIRT 234
Query: 507 WSKALENVMQHDIGFSALGGLIS-HLSR-LMLDDVLRNGDILPYKVYRDCLRMDGQTLYL 564
++L+++ +I ++ I H R L L + LR + G L+L
Sbjct: 235 QKRSLDHLQPVEIYYTNQFMKIDVHSKRNLELTETLRTKE------------KTGSLLWL 282
Query: 565 -DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
D T+ G R+L+ W+ PL E I RL++VE + + + + + L+++ DLERL
Sbjct: 283 LDKTKTAMGGRMLKQWMERPLIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLERL 342
Query: 624 LGRVK-ARVQASSCIVL--PLIGKKVLKQQVKVFGS-----LVKGLRIAMDLLMLMHKEG 675
G+V V A + L L+ + + + + + L++G L L+ +
Sbjct: 343 AGKVAFGNVNARDLLQLRRSLLQVPAILEAISLLDNAYAARLIQGADPCESLTELLGRSI 402
Query: 676 HIIPSLSRIFKPPIFDG-SDGLDKF 699
P LS I DG +D LD++
Sbjct: 403 QENPPLSIKDGDIIKDGYNDKLDQY 427
Score = 66 (28.3 bits), Expect = 9.8e-52, Sum P(3) = 9.8e-52
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
+++FI K ++VI S +DVL+SFA T S + +P++ +K +D PV
Sbjct: 527 VKVFIPKLQHLAKVI---SELDVLQSFA-TVSEEEQFV-KPVLT--TKREIFIKDGRHPV 579
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSD 821
++ K L NG L VPND ++ E+ D
Sbjct: 580 VE-KVL--------NGKLYVPNDCIMPENMD 601
Score = 42 (19.8 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 588 EGINNRLDVVEYLMKNSE 605
+G N++LD Y+ KN +
Sbjct: 418 DGYNDKLDQYRYVSKNGK 435
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 382 (139.5 bits), Expect = 2.3e-51, Sum P(4) = 2.3e-51
Identities = 95/280 (33%), Positives = 143/280 (51%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL + RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KVG
Sbjct: 221 EWLKEERRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVG 280
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DA IG EL + + G G E + LV +GYKV R+EQ E
Sbjct: 281 KFYELYHMDALIGVSELGL-VFMKG--NWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTE 337
Query: 355 TSEQAKAR-----HTNS---VISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNC 401
T E +AR H + V+ R++ V+T T + D + +LL++KE
Sbjct: 338 TPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKED 397
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ VYG FVD + + ++G +DD C+ L+ P +V++E L E K
Sbjct: 398 DSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGSLSTET-K 456
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF 500
+ K S S+ E L P + F DA + + + GYF
Sbjct: 457 MILKGSLSSSLQEGLIPG---SQFWDAGKTLRTLLEEGYF 493
Score = 155 (59.6 bits), Expect = 2.3e-51, Sum P(4) = 2.3e-51
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D+C T GKRLL+ W+C PL + I++RLD +E LM + + V L+KLPDLERL
Sbjct: 612 IDTCHTPFGKRLLKQWLCAPLCNPYAISDRLDAIEDLMVVPDKISEVVDLLKKLPDLERL 671
Query: 624 LGRV 627
L ++
Sbjct: 672 LSKI 675
Score = 143 (55.4 bits), Expect = 2.3e-51, Sum P(4) = 2.3e-51
Identities = 42/115 (36%), Positives = 57/115 (49%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P P P L
Sbjct: 890 FDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTP--------PFLY 941
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLR 843
+KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R
Sbjct: 942 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMR 996
Score = 116 (45.9 bits), Expect = 2.0e-22, Sum P(4) = 2.0e-22
Identities = 44/164 (26%), Positives = 69/164 (42%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LL++KE + VYG FVD + + ++G +DD C+ L+ P +V++E
Sbjct: 388 YLLSLKEKEDDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFE 447
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTPAMAVTD-------------FLDASEVKKLVQLN 497
L E K + K S S+ E L P D F D V L
Sbjct: 448 KGSLSTET-KMILKGSLSSSLQEGLIPGSQFWDAGKTLRTLLEEGYFTDKLNEDSGVMLP 506
Query: 498 GYFNGSSSPW-SKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
G +S S L + ++ SALGG + +L + ++D L
Sbjct: 507 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQEL 550
Score = 37 (18.1 bits), Expect = 2.3e-51, Sum P(4) = 2.3e-51
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 15 SPANKSGAADMSGARKDSNFTT 36
+P N A +SG DSN T
Sbjct: 192 APQNSEPQAHISGGCDDSNRPT 213
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 378 (138.1 bits), Expect = 4.0e-51, Sum P(4) = 4.0e-51
Identities = 91/217 (41%), Positives = 126/217 (58%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGG--PVLK--IKGLWH 798
+ + ++S +D L S + A++ +P LP S +P+ G P+ + + +
Sbjct: 791 DAVSSLSTLDCLLSLSTVAALPGYT--KPTFLPSS-HPSFLSITEGRHPIAEHLLPNGYI 847
Query: 799 PFA-----LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
PF L + P PN L + L+TGPNMGGKS+ RA L V+LAQ
Sbjct: 848 PFTMSLGTLSSSASSPDPNPT--SPSGKPALAQ--LITGPNMGGKSSYTRAVALLVLLAQ 903
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G FVP L+L+D IFTR+GA D + GESTF+VE +ETA++L++AT SLV+LDEL
Sbjct: 904 IGSFVPATSMSLTLSDAIFTRMGARDNLFKGESTFMVEVSETAAILRQATPRSLVVLDEL 963
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
GRGTST DG AIA AV +V + C +LF THY L
Sbjct: 964 GRGTSTHDGRAIAGAVLEYVVRDVGCLMLFVTHYQDL 1000
Score = 129 (50.5 bits), Expect = 4.0e-51, Sum P(4) = 4.0e-51
Identities = 39/129 (30%), Positives = 63/129 (48%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + Q+ +K ++MD LL +VG + + DA I +EL D +
Sbjct: 185 KLTPMELQFLEIKRKHMDTLLIVEVGYKFRFFGEDARIAARELSIVCIPGKFRYDEHPSE 244
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR-HTNSVISRKLVNVV 376
+ + + I + ++LVA GYKVG + Q+ET+ KA + N+ RKL NV
Sbjct: 245 AHLDRFASASIPVHRLPVHAKRLVAAGYKVGVVRQIETAALKKAGDNRNAPFVRKLTNVY 304
Query: 377 TPSTTVDGT 385
T T +D T
Sbjct: 305 TKGTYIDET 313
Score = 110 (43.8 bits), Expect = 4.0e-51, Sum P(4) = 4.0e-51
Identities = 35/96 (36%), Positives = 48/96 (50%)
Query: 539 VLRNGDILP-YKVYRDCLRMD--GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
+L NG L +VYR+ G L+ LD T G+RLLR WI PL D + + R+
Sbjct: 500 MLINGTTLESLEVYRNATDHSEKGSLLWALDKTHTRFGQRLLRKWIGRPLLDQQRLEERV 559
Query: 595 DVVEYLMKNSEVVMV--VAQYLRKLP-DLERLLGRV 627
VE L+ N V + L+ + DLER L R+
Sbjct: 560 SAVEELLNNQSTAKVDKLVNMLKSIKADLERSLIRI 595
Score = 102 (41.0 bits), Expect = 4.0e-51, Sum P(4) = 4.0e-51
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
++E+ FLY L G SYGL VA +A +P+KV+E A+ + ++K +
Sbjct: 1059 EEEITFLYDLAPGVAHRSYGLNVARLARIPRKVLEVAARKSSELEKEV 1106
Score = 42 (19.8 bits), Expect = 4.0e-42, Sum P(4) = 4.0e-42
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 305 EIGHKELDWKITLSGVGKCRQVGISESGIDDAVE---KLVAR--GYKVGRIEQLETSE-Q 358
++GH + + G E G DD E K A+ G K G++ +E +
Sbjct: 136 KLGHPDSMFSYRQRDTESAAVEGEGEEGEDDEEEPAPKTTAKKKGAKTGKLTPMELQFLE 195
Query: 359 AKARHTNSVI 368
K +H ++++
Sbjct: 196 IKRKHMDTLL 205
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 411 (149.7 bits), Expect = 7.6e-51, Sum P(3) = 7.6e-51
Identities = 105/243 (43%), Positives = 136/243 (55%)
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
+ P V D+ + KG+ HP AL + G +PND ++ R +LLTGPNM
Sbjct: 570 RRPLV--DHSDALSITKGM-HPVALTLLDKGTFIPNDTVM----HSAQTRMILLTGPNMA 622
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKST +R L VI+AQ+G F+P + + D IFTR+GA D + G STF+VE ETA
Sbjct: 623 GKSTYIRQIALLVIMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETA 682
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAV--FRQLVERINCRLLFATHYHPLTKEF 954
++L AT SLVILDE+GRGTST+DG AIA AV F + + LFATHY LT E
Sbjct: 683 NILHNATDRSLVILDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELT-EL 741
Query: 955 ASH-PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H HV H K NS G +F+Y + G +S+G+ VA +AG P VV
Sbjct: 742 EMHCQHVENFH--AMVKENS-----GQP--IFMYEIVKGHSKKSFGIHVAKLAGFPLSVV 792
Query: 1014 EAA 1016
A
Sbjct: 793 SRA 795
Score = 211 (79.3 bits), Expect = 7.6e-51, Sum P(3) = 7.6e-51
Identities = 92/377 (24%), Positives = 176/377 (46%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K++ +Q+ K Q D LL F++G+FYE + DA I + LD ITL+ GI
Sbjct: 4 KLTPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLD--ITLTQRQNVPMSGI 61
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
+ +D V++LV+RG+KV EQ + +E +K ++ R + ++TP + ++ P
Sbjct: 62 PATCLDGYVDRLVSRGFKVAIAEQADNTEGSKG-----LVPRTINRLITPGALLSSSLLP 116
Query: 389 DAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
+ ++LAI + GS+ YG + C L + + + + L + +++P
Sbjct: 117 EKANNYVLAINQV------GSL-YGLS---CLDLSIGTFLVAEYDNTKDLIEAICRLAPT 166
Query: 447 EVI-----YE-NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDFLDASEVK 491
E++ Y+ N + K+ Q+ LR F SA +L V+ LD ++
Sbjct: 167 ELLSHAKFYQKNEAVIKQLQQHLRITLSEYVSWAFEYQSATKKLYTCFQVSS-LDGFGLQ 225
Query: 492 KLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY 551
LV N + + S + ++ I ++ + L++D + L ++
Sbjct: 226 GLVPA---INAAGALLSYIQDKLLL-PISHLSIPKIYGQQKHLLIDKASQTNLELLSPIH 281
Query: 552 RDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
+ G L ++ T G RLLR+ + +P D++ I R D VE+ ++ +++ ++
Sbjct: 282 GE--HRKGSLLQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFFLQQADLRKIL 339
Query: 611 AQYLRKLPDLERLLGRV 627
+ L + DLERL ++
Sbjct: 340 KRQLSCVRDLERLATKI 356
Score = 52 (23.4 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 29/114 (25%), Positives = 46/114 (40%)
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
L +A ++ QL C E LA I T L I T + L+ CT A LQ
Sbjct: 330 LQQADLRKILKRQLSCVRDLER----LATKISTSLATPKDIGTLRDS-LLSCTHIADNLQ 384
Query: 901 KAT-----QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHP 949
++ +I L T ++ + ++L +++ +FA HYHP
Sbjct: 385 NCALPEFLENKFLIAPPLCSLIKT-----LSTELIQELPLKVSEGNIFANHYHP 433
Score = 37 (18.1 bits), Expect = 7.6e-51, Sum P(3) = 7.6e-51
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMS 764
+E F+++A + +SC+ L A S S
Sbjct: 326 VEFFLQQADLRKILKRQLSCVRDLERLATKISTS 359
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 463 (168.0 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 107/220 (48%), Positives = 136/220 (61%)
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
G VPND +G +++ P ++LTGPNM GKS+ +R L +LAQ+G FVP VL
Sbjct: 663 GFFVPNDARMGAEAE---PDLIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARGAVLG 719
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+AD IFTR+GA D + TG+STF+VE TETA++L AT SLV+LDE+GRGT+TFDG AIA
Sbjct: 720 VADRIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAIA 779
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL--- 983
+AV L I CR +FATHYH L E AS S NY QEL
Sbjct: 780 WAVAEYLASHIRCRTIFATHYHELN-ELAS------------VVSGVANYQVTVQELADR 826
Query: 984 -VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
VFL+R+T G SYG++V +AG+P VV A + LA
Sbjct: 827 IVFLHRVTPGGADRSYGIEVGRLAGLPPSVV-ARARTVLA 865
Score = 146 (56.5 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 34/101 (33%), Positives = 59/101 (58%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT--LSG--VGKCRQVGISE 330
+QY VK+Q+ LL +++G FYE + DAEI +EL+ +T +G +G+ GI
Sbjct: 26 QQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSRELEIVLTGRQAGDKIGRIPMAGIPH 85
Query: 331 SGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRK 371
++ +L+ +GY V +Q+E+ EQAK R + ++R+
Sbjct: 86 HALERYCAQLIEKGYAVVICDQVESPEQAKERARQAKVARR 126
Score = 123 (48.4 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
Identities = 97/358 (27%), Positives = 146/358 (40%)
Query: 323 CRQVGISESGIDDAVEKLVARGYKV-GRIEQL----ETSEQAKARHTNSVISRKLVN-VV 376
C QV E + A + VAR K G L E EQ SV+ R+ V V+
Sbjct: 105 CDQVESPEQAKERARQAKVARRSKSDGDAPLLPLLLEDGEQIDWEGAESVLVRRAVTRVL 164
Query: 377 TPSTTVDGT--IGPDAVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
TP T ++ +G +L A ++ G C +G AF D + V + S
Sbjct: 165 TPGTVLEDQLLVGRRNNYLAALVQAGEC--------WGLAFADISTGEFQVTQLE---SA 213
Query: 434 AALGALLMQVSPKEVIYENRG-----LCK--EAQKALRKFSAGSAALELTPAMAVTDFLD 486
AL L+++ P EV+ L + EA + L P + +
Sbjct: 214 EALVQELLRLQPAEVLLSGDAPDPLVLLRPGEASSERPECLPSQFCYTLRPRR----YFE 269
Query: 487 ASEVKKLVQ-------LNGYFNGSSSPWS-KALENVMQHDI----GFSA-LGGLISH-LS 532
E ++L+ L G F + P + +A ++QH + G S L G+ ++ LS
Sbjct: 270 LDEARRLLMETFGVRSLEG-FGCENLPLAVRAAGGLVQHLLETQRGVSIPLEGIRTYTLS 328
Query: 533 R-LMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGI 590
+ L+LD R L V RD + G L+ LD T G R LR W+ PL D I
Sbjct: 329 QYLILDHQTRRNLELTQTV-RDGAQY-GSLLWALDRTRTVMGGRALRRWLLQPLLDTRAI 386
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK 648
R D V L + + + L + DLERL GR + + +V +G+ +LK
Sbjct: 387 GRRQDSVAELYDEGLLRERLQRILESVYDLERLAGRCGSGTANARDLVA--LGESLLK 442
Score = 47 (21.6 bits), Expect = 1.0e-50, Sum P(3) = 1.0e-50
Identities = 37/140 (26%), Positives = 58/140 (41%)
Query: 492 KLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD---VLRNGDILPY 548
KL L S+SP+ KAL+++ + LG L R ++D +L G ++
Sbjct: 442 KLPALAEAVAASTSPYLKALQSI---PVELERLG---EKLRRTLVDTPPLILTEGGLIRA 495
Query: 549 KVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL-MKNSEV 606
V+ + M GQ + D V + R+ I LK G N YL + +
Sbjct: 496 GVHPELEGMRGQLIEDRDWLVDLEARERARTGI-QTLK--VGFNKAFGY--YLSISRGKA 550
Query: 607 VMVVAQYLRK--LPDLERLL 624
+YLRK L + ER +
Sbjct: 551 EKAPPEYLRKQTLTNEERYI 570
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 458 (166.3 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
Identities = 105/282 (37%), Positives = 164/282 (58%)
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV 810
+D + SFA ++ + RP+IL + K + + + ++++ H A +
Sbjct: 602 LDAVVSFAHVSNAAPVPYVRPVILEKGKGRIIVKASRHACVEVQ---HDVAF-------I 651
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PND+ +D ++TGPNMGGKST +R T + V++AQ+GCFVPCE +S+ D
Sbjct: 652 PNDVHFEKDKQ----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDC 707
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
I R+GA D + G STF+ E ETAS+L+ AT+DSL+I+DELGRGTST+DG+ +A+A+
Sbjct: 708 ILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIS 767
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+ I +FATH+H LT + P V H+ A + ++ L LY++
Sbjct: 768 EYIATNIGAFCMFATHFHELTALASQIPTVNNLHVT-ALTT--------EETLTMLYQVK 818
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK--SIGES 1030
+G C +S+G+ VA +A P+ V+E A AL +++ SIG S
Sbjct: 819 TGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQSIGTS 860
Score = 151 (58.2 bits), Expect = 2.6e-50, Sum P(2) = 2.6e-50
Identities = 94/372 (25%), Positives = 158/372 (42%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G VD ++ + D+ + L ALL+Q+ PKE I + K +
Sbjct: 156 DGQRQVGVGDVDSTQRKLGLCEFPDNDQFSNLEALLIQIGPKECILPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNG-SSSPWSKALENVMQHDIGFS 522
G + +T + DF K + Q LN G + A+ M++ + S
Sbjct: 216 VIQRGG--ILITERKRI-DF----STKDIYQDLNRLLKGRKGEQMNSAVLPEMENQVAVS 268
Query: 523 ALGGLISHLSRLMLDDV------LRNGDILPY-KVYRDCLR----MDG--------QTL- 562
+L +I L L+ DD L D Y K+ +R G Q+L
Sbjct: 269 SLSAVIKFLE-LLSDDSNFGQFELATFDFSQYMKLDMAAVRALNLFQGSVEDTTGSQSLA 327
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDL 620
+L+ C T+ G+RL+ WI PL D I RL++VE +++SE+ + + LR+ PDL
Sbjct: 328 AFLNKCKTAQGQRLVSQWIKQPLMDKNRIEERLNLVEAFVEDSELRRALQEDLLRRFPDL 387
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIP 679
RL + + QA++ L+ +++ +G++ +++ + K +G
Sbjct: 388 NRLAKKFQR--QAAN-----------LQDCYRLY----QGVKQLPNVIQALEKYQGRHQA 430
Query: 680 SLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD--VTDLDAETLSILIELF--I 735
L +F P+ D KF + E +D D +NH+ V LS L E+ +
Sbjct: 431 LLLAVFVTPLTDLRSDFSKFQEKIETTLDMD--QVENHEFLVKPSFDPNLSELREVMDGL 488
Query: 736 EKASQWSEVIHA 747
EK Q S +I A
Sbjct: 489 EKKMQ-STLISA 499
Score = 41 (19.5 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL 485
S E +N+G +EAQ A+ K ++ + P V D L
Sbjct: 558 SLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTVNDVL 599
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 1038 SEFSSLHEEWLK 1049
SE SSL+EE+ K
Sbjct: 554 SELSSLNEEYTK 565
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVS 1055
S+ E + ++ + E+ + +K IVN+S
Sbjct: 558 SLNEEY--TKNKGEYEEAQDAIVKEIVNIS 585
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 461 (167.3 bits), Expect = 4.8e-50, Sum P(2) = 4.8e-50
Identities = 123/378 (32%), Positives = 203/378 (53%)
Query: 698 KFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAIS-CIDVLRS 756
KF +AI+ ++ +N + + E +++ I AS ++E I ++ I L +
Sbjct: 478 KFTNSKLSAINEEY--IKNREEYE---EAQDAIVKEIINIASGYAEPIQTMNDVIAQLDA 532
Query: 757 FAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL 816
A +S+GA P+ P + P + + G ++ +KG HP ++ +PND+
Sbjct: 533 IVSFAHVSNGA---PV--PYVR-PVILEKGQGRIV-LKGARHPCIEVQDEVAFIPNDVTF 585
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
E ++TGPNMGGKST +R T + V++AQ+GCFVPC +++ D I R+G
Sbjct: 586 -EKGKQMFH---IITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVG 641
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
A D + G STF+ E ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A+A+ + +
Sbjct: 642 AGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASK 701
Query: 937 INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
I +FATH+H LT P V H+ A S D L LYR+ +G C +
Sbjct: 702 ICAFCMFATHFHELTALADQVPTVNNLHVT-ALTS--------DDTLTMLYRVKAGVCDQ 752
Query: 997 SYGLQVAVMAGVPQKVVEAASHAALAM---------KKSIGE--SFKSSEQRSEFSSLHE 1045
S+G+ VA +A P+ V+E+A AL + K+S GE + + +R E + +
Sbjct: 753 SFGIHVAELAAFPKHVIESAREKALELEEFQDIGRPKESEGEPAAKRCYREREEGEKIIQ 812
Query: 1046 EWLKTIVNVSRVDCNSDD 1063
++L + + D + +D
Sbjct: 813 DFLSQVKALPLTDMSEED 830
Score = 143 (55.4 bits), Expect = 4.8e-50, Sum P(2) = 4.8e-50
Identities = 81/326 (24%), Positives = 133/326 (40%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V G +VD ++ V D+ + L ALL+Q+ PKE + E K +
Sbjct: 84 DGQRVIGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQ 143
Query: 465 KFSAGSAAL------ELTPAMAVTDFLDASEVKKLVQLNG---------YFNGSSSPWSK 509
G + + T V D + +K Q+N S S K
Sbjct: 144 VVQRGGILITDRKKADFTTKDIVQDLNRLLKSRKGEQMNSAALPEMEKQVAVSSLSAVIK 203
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRM--DGQTL--YLD 565
LE ++ D F LS+ M VL N + +++ + + Q+L L+
Sbjct: 204 FLE-LLSDDSNFGQYELTTFDLSQYM---VLDNAAVQALNLFQSSVENANNTQSLAGLLN 259
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLL 624
C T G+RL+ WI PL D I RL++VE + ++E+ + + LR+ PDL RL
Sbjct: 260 KCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLA 319
Query: 625 GRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRI 684
+ + QA++ L + Q + ++V+ L H+ H + L+ +
Sbjct: 320 KKFQR--QAAT-----LQDCYRMYQAINQLPNVVQALE--------KHEGAHQMLLLA-V 363
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSD 710
F P+ D KFL E +D D
Sbjct: 364 FITPLNDIHSDFSKFLEMIETTLDMD 389
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 461 (167.3 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 123/378 (32%), Positives = 203/378 (53%)
Query: 698 KFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAIS-CIDVLRS 756
KF +AI+ ++ +N + + E +++ I AS ++E I ++ I L +
Sbjct: 483 KFTNSKLSAINEEY--IKNREEYE---EAQDAIVKEIINIASGYAEPIQTMNDVIAQLDA 537
Query: 757 FAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL 816
A +S+GA P+ P + P + + G ++ +KG HP ++ +PND+
Sbjct: 538 IVSFAHVSNGA---PV--PYVR-PVILEKGQGRIV-LKGARHPCIEVQDEVAFIPNDVTF 590
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
E ++TGPNMGGKST +R T + V++AQ+GCFVPC +++ D I R+G
Sbjct: 591 -EKGKQMFH---IITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVG 646
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
A D + G STF+ E ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A+A+ + +
Sbjct: 647 AGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASK 706
Query: 937 INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
I +FATH+H LT P V H+ A S D L LYR+ +G C +
Sbjct: 707 ICAFCMFATHFHELTALADQVPTVNNLHVT-ALTS--------DDTLTMLYRVKAGVCDQ 757
Query: 997 SYGLQVAVMAGVPQKVVEAASHAALAM---------KKSIGE--SFKSSEQRSEFSSLHE 1045
S+G+ VA +A P+ V+E+A AL + K+S GE + + +R E + +
Sbjct: 758 SFGIHVAELAAFPKHVIESAREKALELEEFQDIGRPKESEGEPAAKRCYREREEGEKIIQ 817
Query: 1046 EWLKTIVNVSRVDCNSDD 1063
++L + + D + +D
Sbjct: 818 DFLSQVKALPLTDMSEED 835
Score = 143 (55.4 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 81/326 (24%), Positives = 133/326 (40%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V G +VD ++ V D+ + L ALL+Q+ PKE + E K +
Sbjct: 89 DGQRVIGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQ 148
Query: 465 KFSAGSAAL------ELTPAMAVTDFLDASEVKKLVQLNG---------YFNGSSSPWSK 509
G + + T V D + +K Q+N S S K
Sbjct: 149 VVQRGGILITDRKKADFTTKDIVQDLNRLLKSRKGEQMNSAALPEMEKQVAVSSLSAVIK 208
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRM--DGQTL--YLD 565
LE ++ D F LS+ M VL N + +++ + + Q+L L+
Sbjct: 209 FLE-LLSDDSNFGQYELTTFDLSQYM---VLDNAAVQALNLFQSSVENANNTQSLAGLLN 264
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLL 624
C T G+RL+ WI PL D I RL++VE + ++E+ + + LR+ PDL RL
Sbjct: 265 KCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLA 324
Query: 625 GRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRI 684
+ + QA++ L + Q + ++V+ L H+ H + L+ +
Sbjct: 325 KKFQR--QAAT-----LQDCYRMYQAINQLPNVVQALE--------KHEGAHQMLLLA-V 368
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSD 710
F P+ D KFL E +D D
Sbjct: 369 FITPLNDIHSDFSKFLEMIETTLDMD 394
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 403 (146.9 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 84/191 (43%), Positives = 121/191 (63%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP + + D IFTR+GA D + +G
Sbjct: 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT+ SLV++DE+GRGTST+DG ++A+A L +I LFAT
Sbjct: 668 STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F++ + GA +SYGL VA +
Sbjct: 728 HYFELTQLPEKMEGVANVHL--------DALEHGDT-IAFMHSVQDGAASKSYGLAVAAL 778
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 779 AGVPKEVIKRA 789
Score = 162 (62.1 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 52/181 (28%), Positives = 92/181 (50%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF+++G FYEL+ DA+ + LD +T G + GI
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP GTI +A
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKGP-----VERKVVRIVTP-----GTISDEA- 123
Query: 392 HLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
LL ++ N S +G+A +D ++ R +++ A + A L + +P E++
Sbjct: 124 -LLQERQDNLLAAIWQDSKGFGYATLDISSGRF---RLSEPADRETMAAELQRTNPAELL 179
Query: 450 Y 450
Y
Sbjct: 180 Y 180
Score = 86 (35.3 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R+L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 295 LDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 351
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 352 LARLALR 358
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 459 (166.6 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 108/308 (35%), Positives = 172/308 (55%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E +++ + +S + E + ++ DVL S + + P+ P + PA+ +
Sbjct: 572 EAQDAIVKEIVNISSGYVEPMQTLN--DVLAQLDAVVSFAHVSNGAPV--PYVR-PAILE 626
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G ++ +K H ++ +PND+ +D ++TGPNMGGKST +R
Sbjct: 627 KGQGRII-LKASRHACVEVQDEIAFIPNDVYFEKDKQ----MFHIITGPNMGGKSTYIRQ 681
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L+ AT+
Sbjct: 682 TGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V H
Sbjct: 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ A + ++ L LY++ G C +S+G+ VA +A P+ V+E A AL ++
Sbjct: 802 VT-ALTT--------EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELE 852
Query: 1025 KS--IGES 1030
+ IGES
Sbjct: 853 EFQYIGES 860
Score = 135 (52.6 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 88/364 (24%), Positives = 147/364 (40%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAAL-ELTPA-MAVTD-FLDASEV---KKLVQLNGYF-----N----GSSSPWSK 509
G + E A + D + D + + KK Q+N N S S K
Sbjct: 216 IIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIK 275
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDCLRMDGQTLYLDSC 567
LE ++ D F S+ M D+ +R ++ V D L+ C
Sbjct: 276 FLE-LLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSV-EDTTGSQSLAALLNKC 333
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGR 626
T G+RL+ WI PL D I RL++VE ++++E+ + + LR+ PDL RL +
Sbjct: 334 KTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKK 393
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIF 685
+ QA++ L+ +++ +G+ +++ + K EG L +F
Sbjct: 394 FQR--QAAN-----------LQDCYRLY----QGINQLPNVIQALEKHEGKHQKLLLAVF 436
Query: 686 KPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELF--IEKASQWSE 743
P+ D KF E +D D + V LS L E+ +EK Q S
Sbjct: 437 VTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQ-ST 495
Query: 744 VIHA 747
+I A
Sbjct: 496 LISA 499
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 459 (166.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 108/308 (35%), Positives = 172/308 (55%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E +++ + +S + E + ++ DVL S + + P+ P + PA+ +
Sbjct: 572 EAQDAIVKEIVNISSGYVEPMQTLN--DVLAQLDAVVSFAHVSNGAPV--PYVR-PAILE 626
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G ++ +K H ++ +PND+ +D ++TGPNMGGKST +R
Sbjct: 627 KGQGRII-LKASRHACVEVQDEIAFIPNDVYFEKDKQ----MFHIITGPNMGGKSTYIRQ 681
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L+ AT+
Sbjct: 682 TGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V H
Sbjct: 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ A + ++ L LY++ G C +S+G+ VA +A P+ V+E A AL ++
Sbjct: 802 VT-ALTT--------EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELE 852
Query: 1025 KS--IGES 1030
+ IGES
Sbjct: 853 EFQYIGES 860
Score = 135 (52.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 88/364 (24%), Positives = 147/364 (40%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAAL-ELTPA-MAVTD-FLDASEV---KKLVQLNGYF-----N----GSSSPWSK 509
G + E A + D + D + + KK Q+N N S S K
Sbjct: 216 IIQRGGILITERKKADFSTKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIK 275
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDCLRMDGQTLYLDSC 567
LE ++ D F S+ M D+ +R ++ V D L+ C
Sbjct: 276 FLE-LLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSV-EDTTGSQSLAALLNKC 333
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGR 626
T G+RL+ WI PL D I RL++VE ++++E+ + + LR+ PDL RL +
Sbjct: 334 KTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKK 393
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIF 685
+ QA++ L+ +++ +G+ +++ + K EG L +F
Sbjct: 394 FQR--QAAN-----------LQDCYRLY----QGINQLPNVIQALEKHEGKHQKLLLAVF 436
Query: 686 KPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELF--IEKASQWSE 743
P+ D KF E +D D + V LS L E+ +EK Q S
Sbjct: 437 VTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQ-ST 495
Query: 744 VIHA 747
+I A
Sbjct: 496 LISA 499
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 437 (158.9 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 106/289 (36%), Positives = 160/289 (55%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ +D + SFAV + + RP IL + G L +K HP ++
Sbjct: 599 IAQLDAVVSFAVVSHTAPVPFIRPKIL----------EKGSGRLVLKAARHPCVEAQDEV 648
Query: 808 LPVPNDI--LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
+PND+ + GE ++TGPNMGGKST +R + V++AQ+GCFVPC+ L
Sbjct: 649 AFIPNDVTFISGEKMFH------IITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAEL 702
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
S+ D + R+GA D + G STF+ E ETA++L+ A++DSL+I+DELGRGTST+DG+ +
Sbjct: 703 SVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGL 762
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+A+ + R+ LFATH+H LT P V H+ A + D L
Sbjct: 763 AWAISEYIATRLKSFCLFATHFHELTALAQQVPTVRNLHVT-ALTT--------DSTLTM 813
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK-----SIGE 1029
LY++ G C +S+G+ VA +A P+ V+ A AL +++ S+GE
Sbjct: 814 LYKVKKGVCDQSFGIHVAELASFPKHVIANAREKALELEEFQDISSVGE 862
Score = 157 (60.3 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 127/515 (24%), Positives = 209/515 (40%)
Query: 263 PPEALKKMSASQKQYWNVKSQYMD----VLLFFKVGKFYELYELDAEIGHKEL---DWKI 315
P + L SAS+ + N D + F +Y ++ DA KE+ + I
Sbjct: 5 PKQNLSMDSASEHGFLNFYFSMSDKPDTTVRVFDRNDYYTVHGKDAIFAAKEVFKTNGVI 64
Query: 316 TLSGVGKCR--QVGISESGIDDAV-EKLVARGYKVGRIEQLETSEQAKARHTNSVISRKL 372
G G R V +S+ + V + L+ R Y R+E + + ++ H + +
Sbjct: 65 KNLGSGNRRLESVVLSKMNFESFVRDLLLVRQY---RVEVYKNASKSSKEHDWQIAFKAS 121
Query: 373 VNVVTPSTTV-DGTIG-P--DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN 428
+T + G+ G P AV ++ ++ G G D G V G +VD ++ V
Sbjct: 122 PGNLTQFEEILFGSGGGPAEGAVGVVGVRLGT-GTD-GQRVVGVGYVDSTLRKLGVCEFP 179
Query: 429 DDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488
D+ + L ALL+Q+ PKE + + K + G + LT ++F
Sbjct: 180 DNDQFSNLEALLVQIGPKECVLPAGDSGGDLGKLKQVVQRGG--ILLTDRKK-SEFTTKD 236
Query: 489 EVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLM------------- 535
V+ L +L G + S AL M+ I S L +I +L L
Sbjct: 237 IVQDLNRLLKARKGETVS-SAALPE-MEKKIAMSCLEAVIRYLELLADEANFGSFKMTTF 294
Query: 536 -LDDVLR--NGDILPYKVYR-DCLRMDG-QTL--YLDSCVTSSGKRLLRSWICHPLKDVE 588
L+ +R N + +++ C G +L L+ C T G+RL+ WI PL D
Sbjct: 295 DLNQYMRLDNAAVQALNLFQGSCDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKN 354
Query: 589 GINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVL 647
I RLD+VE +++SE+ + LR+ PDL R+ + + Q+S+ L
Sbjct: 355 KIEERLDLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQR--QSSN-----------L 401
Query: 648 KQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAI 707
+ +V+ S+ G ++ +L L G L F P+ D KF E +
Sbjct: 402 QDCYRVYQSV--G-QLPNVVLALERYSGKHQVLLHAAFISPLNDLISDFSKFQEMIETTL 458
Query: 708 DSDFPDYQNHDVTDLDAETLSILIELF--IEKASQ 740
D + ++ V TLS L E +EKA Q
Sbjct: 459 DMNQVEHHEFLVKPSFDPTLSDLRENMDRLEKAMQ 493
Score = 52 (23.4 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 22/100 (22%), Positives = 42/100 (42%)
Query: 610 VAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLM 669
V Q + +LP++ L R + Q ++L L + F + + +D+
Sbjct: 407 VYQSVGQLPNVVLALERYSGKHQ----VLLHAAFISPLNDLISDFSKFQEMIETTLDMNQ 462
Query: 670 LMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDS 709
+ H E + PS F P + D + +D+ +AA+ S
Sbjct: 463 VEHHEFLVKPS----FDPTLSDLRENMDRLEKAMQAALSS 498
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 361 (132.1 bits), Expect = 3.0e-48, Sum P(4) = 3.0e-48
Identities = 90/255 (35%), Positives = 138/255 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPND L DS ++TGPNM GKS+ +R + +L+ +G F+P + + D
Sbjct: 590 VPNDTKLDRDSF-----IHVITGPNMAGKSSYIRQVGVLTLLSHIGSFIPARRAKIPVVD 644
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+FTR+G+ D + G STF+ E E +++L AT+ SLVILDE+GRGTST+DG AI+ A+
Sbjct: 645 ALFTRIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAI 704
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+ + E++ + L ATH+ +T+ V HM K + + FLY L
Sbjct: 705 VKYISEKLKAKTLLATHFLEITELEGKIEGVKNYHM---------EVEKTPEGIRFLYIL 755
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAM-----KKS-----IGESFKSSEQRSE 1039
G S+G++VA +AG+P++VVE A + KK + E+FK SE+
Sbjct: 756 KEGKAEGSFGIEVAKLAGLPEEVVEEARKILRELEEKENKKEDIVPLLEETFKKSEEAQR 815
Query: 1040 FSSLHEEWLKTIVNV 1054
+EE +K I +
Sbjct: 816 LEE-YEEIIKKIEEI 829
Score = 185 (70.2 bits), Expect = 3.0e-48, Sum P(4) = 3.0e-48
Identities = 47/124 (37%), Positives = 68/124 (54%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL--SGVGKCR- 324
K+++ QY K+QY D LL F++G FYEL+ DA IG KEL +T +G GK R
Sbjct: 6 KELTPMLSQYHYFKNQYPDCLLLFRLGDFYELFYEDAYIGSKELGLVLTSRPAGKGKERI 65
Query: 325 -QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + + KLV +GYKV EQ+E +AK ++ R++V V+TP T +
Sbjct: 66 PMCGVPYHSANSYIAKLVNKGYKVAICEQVEDPSKAKG-----IVKREVVRVITPGTFFE 120
Query: 384 GTIG 387
G
Sbjct: 121 RDTG 124
Score = 90 (36.7 bits), Expect = 3.0e-48, Sum P(4) = 3.0e-48
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D +T G+R L+ + P + E I + V+ L +N E ++ + Q L + DLERL
Sbjct: 286 IDRTLTGMGRRRLKFRLLSPFRSREKIERIQEGVQELKENREALLKIRQILEGMADLERL 345
Query: 624 LGRVKARV 631
+ ++ + +
Sbjct: 346 VSKISSNM 353
Score = 47 (21.6 bits), Expect = 3.0e-48, Sum P(4) = 3.0e-48
Identities = 18/93 (19%), Positives = 41/93 (44%)
Query: 697 DKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRS 756
++F T+ ++ Q + DL+ E L E +++ + A++ +D ++S
Sbjct: 493 ERFTTEELQRLEEKILSAQTR-INDLEYELYKELRERVVKELDKVGNNASAVAEVDFIQS 551
Query: 757 FAVTASMSSGA---MHR--PLILPQSKNPAVRQ 784
A A A +H LI+ + ++P + +
Sbjct: 552 LAQIAYEKDWAKPQIHEGYELIIEEGRHPVIEE 584
Score = 46 (21.3 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
EG+N LD + ++ N+E + +Y +KL
Sbjct: 421 EGVNAYLDELRFIRDNAETYL--REYEKKL 448
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 367 (134.2 bits), Expect = 2.7e-47, Sum P(3) = 2.7e-47
Identities = 109/307 (35%), Positives = 152/307 (49%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ D + S A A G RP + Q +
Sbjct: 788 VLDCSAEWLDFL-ENFSEHYHSLCKAVHHLATADCIFSLAKVAKQ--GDYCRPTL--QEE 842
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN L E S+ +L+L GP+ G +
Sbjct: 843 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNSTDLSEWSE----LSLVLVGPSRGIR 890
Query: 839 STLLRATCLAV-ILAQLGCFVP-CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
+ L ILA + FV E L + D F R+GA D I G STF+ E T+TA
Sbjct: 891 GNFFKIIRLINHILALMALFVILAEESWLFVLDFFFIRMGAADNIYKGRSTFMEELTDTA 950
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-EFA 955
+++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + E +
Sbjct: 951 EIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKS 1010
Query: 956 SHPHVTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQ 1010
V HM + G+++ V FLY++T G+ SYGL VA +A VP
Sbjct: 1011 YSQQVGNYHMGFLVNEDESKQDPGEEDKVPDFVTFLYQITRGSAARSYGLNVAKLADVPG 1070
Query: 1011 KVVEAAS 1017
++++ A+
Sbjct: 1071 EILKKAA 1077
Score = 135 (52.6 bits), Expect = 2.7e-47, Sum P(3) = 2.7e-47
Identities = 40/114 (35%), Positives = 58/114 (50%)
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVT 569
LE V+ F L G + ++ + LRN +IL + D ++ G + LD T
Sbjct: 503 LEKVLSKPKNFKQLSGEMEFMT--INGTTLRNLEILQNQT--D-MKTKGSLFWVLDHTKT 557
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
S G+R L+ W+ PL + IN RLD V E + S V + +LRKLPD+ER
Sbjct: 558 SFGRRKLKKWVTQPLLKLREINARLDAVSEVVHSESSVFGQIESHLRKLPDIER 611
Score = 135 (52.6 bits), Expect = 2.7e-47, Sum P(3) = 2.7e-47
Identities = 39/114 (34%), Positives = 57/114 (50%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +K Q D +L + G Y + DAEI +EL+ L I +
Sbjct: 223 QYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFV 280
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
V +LVA+GYKVG ++Q ET+ +A + +SV SRKL + T ST + + P
Sbjct: 281 HVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNP 334
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 452 (164.2 bits), Expect = 5.2e-47, Sum P(2) = 5.2e-47
Identities = 108/306 (35%), Positives = 169/306 (55%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK-NPAVRQ 784
T S L+ + A+ + V+ ++ VL V S + ++H P+ + K +P +
Sbjct: 563 TQSSLVNEVVGVAASYCPVLERLAA--VLAHLDVIVSFAHCSVHAPISYVRPKIHP---R 617
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLG-EDSDDCLPRTLLLTGPNMGGKSTLLR 843
G VL HP ++ + ND+ L EDS L++TGPNMGGKST +R
Sbjct: 618 GTGRTVLTEAR--HPCMEVQDDVTFITNDVTLTREDSS-----FLIITGPNMGGKSTYIR 670
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT
Sbjct: 671 QIGVIALMAQIGCFVPCSSAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSAT 730
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+SL+I+DELGRGTST+DG+ +A+A+ +V+ I C LFATH+H LT +P+V
Sbjct: 731 AESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPNVKNL 790
Query: 964 HMACAFK---------SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
H+ ++ + +K +E+ LY++ G C +S+G+ VA + P KVV
Sbjct: 791 HVTAHISGTDTDTDVITDEDEKAKKKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVR 850
Query: 1015 AASHAA 1020
A A
Sbjct: 851 MAKRKA 856
Score = 126 (49.4 bits), Expect = 5.2e-47, Sum P(2) = 5.2e-47
Identities = 91/348 (26%), Positives = 149/348 (42%)
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE-VIYE 451
+LA+K + +V G F D + + V D+ + ALL+Q+ KE ++ +
Sbjct: 136 ILAVKISAKASEARTV--GVCFADASVRELGVSEFLDNDLYSNFEALLIQLGVKECIVTQ 193
Query: 452 NRGLCKEAQKALRKF-----SAGSAALELTPAMAVTDFL--DASEVKK-------LVQLN 497
++G KE L K + G A E + T + D S + K L Q +
Sbjct: 194 DKGE-KEKDPELAKLRQIIDNCGVAIAERSAGEFGTKDIEQDLSRLLKDERAASLLPQTD 252
Query: 498 -GYFNGSSSPWSKALENVMQHDIGFSALGGLISH-LSRLM-LDDV-LRNGDILPYKVYRD 553
GS+S K L ++ HD L H L++ M LD L+ +++P RD
Sbjct: 253 LKLAMGSASALIKYL-GIL-HDPSNFGQYQLYQHDLAQFMKLDAAALKALNLMPGA--RD 308
Query: 554 CLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +LY L+ C T G RLL W+ PL + E I R +VE ++E+ +
Sbjct: 309 GAK--NMSLYGLLNHCKTPVGSRLLSQWLKQPLMNAEEIEKRQQLVEAFANDTELRQSMQ 366
Query: 612 Q-YLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
+ +LR +PDL RL R + GK L+ V+ + +++ L + L
Sbjct: 367 EEHLRSIPDLYRLSKRFQR-------------GKATLEDVVRAYQVVIR-LPGFIGTLEG 412
Query: 671 MHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+ E + P L ++ + + SD L K E +D D D NH+
Sbjct: 413 VMDEAYRDP-LDEVYTNKLRELSDSLVKLQEMVETTVDLDALD--NHE 457
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 448 (162.8 bits), Expect = 8.7e-47, Sum P(2) = 8.7e-47
Identities = 106/313 (33%), Positives = 173/313 (55%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + +++ + +S + E + ++ DVL S + + P+ P + P + +
Sbjct: 572 EAQNAIVKEIVNISSGYVEPMQTLN--DVLAQLDAVVSFAHVSDAAPV--PYVR-PVILE 626
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G + +K H ++ +PND+ +D ++TGPNMGGKST +R
Sbjct: 627 KGRGRIT-LKASRHACVEVQDEVAFIPNDVHFEKDKQ----MFHIITGPNMGGKSTYIRQ 681
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L+ AT+
Sbjct: 682 TGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V H
Sbjct: 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ A + ++ L LY++ G C +S+G+ VA +A P+ V+E A AL ++
Sbjct: 802 VT-ALTT--------EETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELE 852
Query: 1025 K--SIGESFKSSE 1035
+ +IG+ + E
Sbjct: 853 EFQNIGKPQECDE 865
Score = 128 (50.1 bits), Expect = 8.7e-47, Sum P(2) = 8.7e-47
Identities = 86/364 (23%), Positives = 146/364 (40%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRQVGVGYVDSTQRKLGLCEFPDNDQFSNLEALLIQIGPKECVMPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAAL-ELTPA-MAVTD-FLDASEV---KKLVQLNGYF-----N----GSSSPWSK 509
G + E A + D + D + + KK Q+N N S S K
Sbjct: 216 VIQRGGILITERKRADFSTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAVSSLSAVIK 275
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDCLRMDGQTLYLDSC 567
LE ++ D F S+ M D+ +R ++ V D L+ C
Sbjct: 276 FLE-LLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSV-EDTSGSQSLAALLNKC 333
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGR 626
T G+RL+ WI PL D I RL++VE ++++E+ + + LR+ PDL RL +
Sbjct: 334 KTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQNLQEDLLRRFPDLNRLAKK 393
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIF 685
+ QA++ L+ +++ +G+ +++ + K EG +F
Sbjct: 394 FQR--QAAN-----------LQDCYRLY----QGINQLPNVIQALEKYEGKHQALFLAVF 436
Query: 686 KPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELF--IEKASQWSE 743
P+ D KF E +D D + V LS L E+ +EK Q S
Sbjct: 437 VTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMDDLEKKMQ-ST 495
Query: 744 VIHA 747
++ A
Sbjct: 496 LVSA 499
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 463 (168.0 bits), Expect = 8.8e-47, Sum P(3) = 8.8e-47
Identities = 120/370 (32%), Positives = 191/370 (51%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
D D + S L++ + +S V+ +S VL + V S + + + P+ P +
Sbjct: 581 DYDRKQ-SALVKEIVTITLSYSPVLEKLSL--VLANLDVLCSFAHVSSYAPI--PYVRPV 635
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
G +++ HP ++ + ND++L DS ++TGPNMGGKST
Sbjct: 636 MYDMHAGQRKMELLASRHPLVEAQDEVTFISNDVVLEADSSGFA----IITGPNMGGKST 691
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R + +LAQ+GCFVPC+ +++ D I R+GA D + G STF+ E ETAS+L+
Sbjct: 692 YIRQVGVICLLAQIGCFVPCDAAEITIVDAILCRVGAGDSQLKGVSTFMAEMLETASILR 751
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT++SL+I+DELGRGTST+DG+ +A+++ + + I C LFATH+H LT P+V
Sbjct: 752 NATKNSLIIIDELGRGTSTYDGFGLAWSISEHIAKNIGCFALFATHFHELTALADDCPNV 811
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
T H+ + S K D ++ LY++ G +S+G+ VA + P K+V+ A A
Sbjct: 812 TNLHVVAHVEEKSH---KSD-DITLLYKVEPGISDQSFGIHVAEVVQFPSKIVKMAKRKA 867
Query: 1021 LAMK--KSIGESFK----SSE---QRSE-FSSLHEEWLKTIVNVSRVDCNSDDDDAYDTL 1070
+ K E K S E + SE +L +EW +I+ +D DD+ +
Sbjct: 868 TELDDIKEETECLKKLKCSPEHIAKGSEVLKNLLQEWA-SILRAENLDQQLDDESIQELC 926
Query: 1071 FCLWHELKNS 1080
L NS
Sbjct: 927 IDKLRSLVNS 936
Score = 109 (43.4 bits), Expect = 8.8e-47, Sum P(3) = 8.8e-47
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T++G RLL W+ PL D I R ++V+YL+ E+ ++ YL +PD+ R
Sbjct: 336 LNKCKTNAGVRLLNEWLKQPLSDKGSIEKRHNLVDYLVDQLELRSILRDDYLPLVPDVRR 395
Query: 623 L 623
L
Sbjct: 396 L 396
Score = 49 (22.3 bits), Expect = 8.8e-47, Sum P(3) = 8.8e-47
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 369 SRKLVNVVTPSTT--VDG--TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWV 424
S KL+ +P VD + D+ +LA + +G V G ++VD + ++ +
Sbjct: 112 SWKLLKSASPGNIDQVDDLMNVSVDSSVVLASVKFQFNASDGFCVLGVSYVDSNSYKIGM 171
Query: 425 GTINDDASCAALGALLMQVSPKEVI 449
I D+ + + L+Q+ KE +
Sbjct: 172 LDIVDNEVYSNFESFLIQLGVKECL 196
Score = 40 (19.1 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 584 LKDVEGINNRLDVVEYLMKNSE 605
LK V G+ R V +KNSE
Sbjct: 210 LKKVTGVIERCGCVVTFVKNSE 231
Score = 37 (18.1 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 83 NEGTSGGSSLFSSIMHKFVKVDA 105
N G G + + +F+K+DA
Sbjct: 276 NAGNEGSYQIVEYSLSEFMKLDA 298
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 447 (162.4 bits), Expect = 8.9e-47, Sum P(2) = 8.9e-47
Identities = 106/308 (34%), Positives = 170/308 (55%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E +++ + +S + E + ++ DVL S + + P+ P + P + +
Sbjct: 572 EAQDAIVKEIVNISSGYVEPMQTLN--DVLAQLDAVVSFAHVSNGAPV--PYVR-PVILE 626
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G + +K H ++ +PND+ +D ++TGPNMGGKST +R
Sbjct: 627 KGQGRIT-LKASRHACVEVQDEVAFIPNDVHFEKDKQ----MFHIITGPNMGGKSTYIRQ 681
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L+ AT+
Sbjct: 682 TGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V H
Sbjct: 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ A + ++ L LY++ G C +S+G+ VA +A P+ V+E A AL ++
Sbjct: 802 VT-ALTT--------EETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELE 852
Query: 1025 K--SIGES 1030
+ +IG S
Sbjct: 853 EFQNIGGS 860
Score = 129 (50.5 bits), Expect = 8.9e-47, Sum P(2) = 8.9e-47
Identities = 85/363 (23%), Positives = 147/363 (40%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAAL-ELTPAMAVTD--FLDASEV---KKLVQLNGYF-----NG-SSSPWSKALE 512
G + E A T + D + + KK Q+N N ++S S ++
Sbjct: 216 VIQRGGILITERKRADFFTKDIYQDLNRLLKGKKGEQVNSAVLPEMENQVAASALSAVIK 275
Query: 513 --NVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDCLRMDGQTLYLDSCV 568
++ D F S+ M D+ +R ++ V D L+ C
Sbjct: 276 FLELLSDDSNFGQYELTTFDFSQYMKLDIAAVRALNLFQGSV-EDTTGSQSLAALLNKCK 334
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGRV 627
T G+RL+ WI PL D I RL++VE ++++E+ + + LR+ PDL RL +
Sbjct: 335 TPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKF 394
Query: 628 KARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIFK 686
+ QA++ L+ +++ +G+ +++ + K EG L +F
Sbjct: 395 QR--QAAN-----------LQDCYRLY----QGINQLPNVIRALEKYEGKHQGLLLAVFV 437
Query: 687 PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELF--IEKASQWSEV 744
P+ D KF E +D D + V LS L E+ +EK Q S +
Sbjct: 438 TPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMDDLEKKMQ-STL 496
Query: 745 IHA 747
I A
Sbjct: 497 ISA 499
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 444 (161.4 bits), Expect = 9.3e-47, Sum P(2) = 9.3e-47
Identities = 105/287 (36%), Positives = 162/287 (56%)
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV 810
+D + SFA ++ + RP+IL + K G ++ +K H ++ +
Sbjct: 602 LDAIVSFAHVSNAAPVPYVRPVILEKGK---------GRII-LKASRHACVEVQDEVAFI 651
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PND+ +D ++TGPNMGGKST +R T + V++AQ+GCFVPCE +S+ D
Sbjct: 652 PNDVHFEKDKQ----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDC 707
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
I R+GA D + G STF+ E ETAS+L+ AT+DSL+I+DELGRGTST+DG+ +A+A+
Sbjct: 708 ILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIS 767
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+ +I +FATH+H LT P V H+ A + ++ L LY++
Sbjct: 768 DYIATKIGAFCMFATHFHELTALANQIPTVNNLHVT-ALTT--------EETLTMLYQVK 818
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK--SIGESFKSSE 1035
G C +S+G+ VA +A P+ V+ A AL +++ +IG S E
Sbjct: 819 KGVCDQSFGIHVAELANFPRHVIACAKQKALELEEFQNIGTSLGCDE 865
Score = 132 (51.5 bits), Expect = 9.3e-47, Sum P(2) = 9.3e-47
Identities = 87/358 (24%), Positives = 146/358 (40%)
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G +VD ++ + ++ + L ALL+Q+ PKE + + K + G
Sbjct: 162 GVGYVDSTQRKLGLCEFPENDQFSNLEALLIQIGPKECVLPGGETTGDMGKLRQVIQRGG 221
Query: 471 AAL-ELTPA-MAVTD-FLDASEV---KKLVQLNGYF-----N----GSSSPWSKALENVM 515
+ E A + D + D + + KK Q+N N S S K LE ++
Sbjct: 222 ILITERKRADFSTKDIYQDLNRLLKGKKGEQINSAALPEMENQVAVSSLSAVIKFLE-LL 280
Query: 516 QHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGK 573
D F S+ M D+ +R ++ V D L+ C T+ G+
Sbjct: 281 SDDSNFGQFELATFDFSQYMKLDMAAVRALNLFQGSV-EDTTGSQSLAALLNKCKTAQGQ 339
Query: 574 RLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGRVKARVQ 632
RL+ WI PL D I RL++VE +++SE+ + + LR+ PDL RL + + Q
Sbjct: 340 RLVNQWIKQPLMDRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQR--Q 397
Query: 633 ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIFKPPIFD 691
A++ L+ +++ +G+ ++ + K EG L +F P+ D
Sbjct: 398 AAN-----------LQDCYRLY----QGINQLPSVIQALEKYEGRHQALLLAVFVTPLID 442
Query: 692 GSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELF--IEKASQWSEVIHA 747
KF E +D D + V LS L E+ +EK Q S +I+A
Sbjct: 443 LRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREVMDGLEKKMQ-STLINA 499
Score = 39 (18.8 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
S E +N+G +EAQ A+ K ++ + P + D L + + +V N +
Sbjct: 558 SLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVL--AHLDAIVSFAHVSNAA 615
Query: 504 SSPW 507
P+
Sbjct: 616 PVPY 619
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 447 (162.4 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 103/301 (34%), Positives = 167/301 (55%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + +++ + +S + E + ++ DVL S + + P+ P + P + +
Sbjct: 222 EAQNAIVKEIVNISSGYVEPMQTLN--DVLAQLDAVVSFAHVSNGAPV--PYVR-PVILE 276
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G + +K H ++ +PND+ +D ++TGPNMGGKST +R
Sbjct: 277 KGQGRIT-LKASRHACVEVQDEVAFIPNDVHFEKDKQ----MFHIITGPNMGGKSTYIRQ 331
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L+ AT+
Sbjct: 332 TGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 391
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V H
Sbjct: 392 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 451
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ A + ++ L LY++ G C +S+G+ VA +A P+ V+E A AL ++
Sbjct: 452 VT-ALTT--------EETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELE 502
Query: 1025 K 1025
+
Sbjct: 503 E 503
Score = 78 (32.5 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 44/168 (26%), Positives = 75/168 (44%)
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGRVKARVQASSCIVLPLIGK 644
D I RL++VE ++++E+ + + LR+ PDL RL + + QA++
Sbjct: 2 DKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQR--QAAN--------- 50
Query: 645 KVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIFKPPIFDGSDGLDKFLTQF 703
L+ +++ +G+ +++ M K EG L +F P+ D KF
Sbjct: 51 --LQDCYRLY----QGINQLPNVIQAMEKYEGQHQALLLAVFVTPLIDLRSDFSKFQEMI 104
Query: 704 EAAIDSDFPDYQNHD--VTDLDAETLSILIELF--IEKASQWSEVIHA 747
E +D D +NH+ V LS L E+ +EK Q S +I A
Sbjct: 105 ETTLDMD--QVENHEFLVKPSFDPNLSELREIMDDLEKKMQ-STLISA 149
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 446 (162.1 bits), Expect = 4.0e-46, Sum P(3) = 4.0e-46
Identities = 98/251 (39%), Positives = 152/251 (60%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L +K HP ++ +PND+ L S + L ++TGPNMGGKST +R + +
Sbjct: 684 LYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELL----IITGPNMGGKSTYIRQVGVITV 739
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+GC VPCE+ L + D I R+GA+D + G STF+ E ETA++L+ AT SL+I+
Sbjct: 740 MAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIII 799
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM-ACAF 969
DELGRGTST DG+ +A+A+ +V +I C LFATHYH +TK S T++++ A+
Sbjct: 800 DELGRGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMTK--LSEEITTVKNLHVTAY 857
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK-KSIG 1028
+SE+ +++ LY + GA S+G+ VA +A P K++E AS+ A ++ + G
Sbjct: 858 VGDSES-----KDVALLYNVCEGASDRSFGIHVAKLAHFPPKIIEMASNKAAELEAEDSG 912
Query: 1029 ESFKSSEQRSE 1039
+ E +S+
Sbjct: 913 AQGDTQEVKSK 923
Score = 116 (45.9 bits), Expect = 4.0e-46, Sum P(3) = 4.0e-46
Identities = 46/175 (26%), Positives = 79/175 (45%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ---YLR 615
+LY L+ C T+ G R LR WI PL D + I R D+V L++++E ++ LR
Sbjct: 339 SLYGLLNHCRTAMGARNLRRWIVQPLLDAKSIERRHDLVSALVEDAEARQLLLDDDHLLR 398
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEG 675
+PD+ +L R+ R AS V+ + Q K +V +D L HK+
Sbjct: 399 SIPDIPKLCRRL-TRGSASLEDVVRIY------QMAKALPKIVT----VLDSLTSEHKD- 446
Query: 676 HIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDV-TDLDAETLSI 729
+ +++ + + L+K + E ID + D + + + D E L +
Sbjct: 447 ----LVDKVYTNVLNNHCKNLEKLIELVETTIDLEALDSHQYIIRAEFDEELLDL 497
Score = 55 (24.4 bits), Expect = 4.0e-46, Sum P(3) = 4.0e-46
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 409 VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRG 454
+ G AF+D ++ V D + AL++QV KE I G
Sbjct: 158 IIGVAFIDPILKKLGVSEFVDSDAYTNFEALIVQVGAKECIISQSG 203
Score = 42 (19.8 bits), Expect = 7.5e-37, Sum P(3) = 7.5e-37
Identities = 33/150 (22%), Positives = 65/150 (43%)
Query: 436 LGALLMQVSPKEVIYENRGLCK---EAQKALRKFSAGSAALE-------LTPAMA-VTDF 484
+ AL+ ++++ ++ L + + K R+ + GSA+LE + A+ +
Sbjct: 377 VSALVEDAEARQLLLDDDHLLRSIPDIPKLCRRLTRGSASLEDVVRIYQMAKALPKIVTV 436
Query: 485 LDA--SEVKKLVQ--LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD--- 537
LD+ SE K LV N K +E +++ I AL ++ R D
Sbjct: 437 LDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIE-LVETTIDLEALDSH-QYIIRAEFDEEL 494
Query: 538 -DVLRNGDILPYKVYRDCLRMDGQTLYLDS 566
D+ + D L + ++ + R+ G L+ D+
Sbjct: 495 LDLRQRLDELQHSIFEEHKRV-GSDLHQDT 523
Score = 40 (19.1 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
+++G+SE DA A +VG E + + ++ + NS +S + ++
Sbjct: 169 KKLGVSEFVDSDAYTNFEALIVQVGAKECIISQSGHESTNGNSAVSINTAEINRLRNIIE 228
Query: 384 G 384
G
Sbjct: 229 G 229
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 433 (157.5 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 119/366 (32%), Positives = 193/366 (52%)
Query: 694 DGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
DG+ +F T+ ID+ Y+ LD + L + ++ A+ + +I +S +
Sbjct: 581 DGV-RFATR---EIDTLNEAYKKWSAEYLDKQ--DGLAKRTLQIAASFVPLIEDLSSLIA 634
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA-LGENGGLPVPN 812
VT S S P I P+ P +NG + I G HP + +N + N
Sbjct: 635 TLDVFVTLSHVSSIAPIPFIRPEII-PLGSDENGAGTVIIGGR-HPCVEIQDNVNF-IAN 691
Query: 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
DI L + ++TGPNMGGKST +R L V++AQ+GCFVP + +++ D I
Sbjct: 692 DIDLTRGQS----QFQIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCIL 747
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
+R+GA D + G STF+ E ET+ +L+ AT++SL+I+DELGRGTST+DG+ +A+ +
Sbjct: 748 SRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEY 807
Query: 933 LVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSG 992
+ +I LFATH+H LT P V H++ + ++N+ LY++ G
Sbjct: 808 ICNQIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNT---------FTLLYKVEQG 858
Query: 993 ACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIV 1052
C +S+G+ VA++A P +V+E A A K + ESF+S+ + + EE+ +
Sbjct: 859 PCDQSFGIHVAILANFPSQVIENAKQKA----KEL-ESFESNTLKQNHNKFLEEFKEINF 913
Query: 1053 NVSRVD 1058
N + V+
Sbjct: 914 NSNDVE 919
Score = 102 (41.0 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 560 QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRK 616
Q+LY L+ C T G RLL W+ PL + E I RL+ VE + E+ + + L+K
Sbjct: 358 QSLYNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKK 417
Query: 617 LPDLERLLGRVKA-RVQASSCIVL 639
+ DL+RL ++ + C+ L
Sbjct: 418 IGDLDRLSKKLHGQKATLEDCVNL 441
Score = 76 (31.8 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ GS+V+G +F D + V D+ + + L + +MQ+S KE + + QK
Sbjct: 179 EKGSIVFGISFGDATFKTIGVSQFMDNDNLSNLSSFIMQMSVKECLLCCDQKNYDYQKVK 238
Query: 464 RKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNG 498
K S A + T + +DF + + L +L G
Sbjct: 239 EKLS--DAGIPFTE-LPKSDFSSKNAEQDLTRLLG 270
Score = 41 (19.5 bits), Expect = 5.6e-36, Sum P(2) = 5.6e-36
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 598 EYLMKNSE--VVMVVAQYLRKLPDLERLLGRVKARVQASSCIV 638
++ KN+E + ++ LPD+E+ + +Q++SC++
Sbjct: 255 DFSSKNAEQDLTRLLGSVKNNLPDIEQ-----EHAIQSASCLI 292
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 390 (142.3 bits), Expect = 1.8e-44, Sum P(3) = 1.8e-44
Identities = 87/209 (41%), Positives = 125/209 (59%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
+PN + L D+ D +LTGPNM GKST +R L IL Q+G FVP + L + D
Sbjct: 587 IPNSVYL--DTQD--KAIAVLTGPNMAGKSTFMRQIALNQILFQIGAFVPAKSAKLPIVD 642
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+FTR+GA D + GESTF VE ETA++L T+DSL++ DE+GRGTST+DG +IA+++
Sbjct: 643 KLFTRIGAGDNLTAGESTFFVEMKETANILNHYTEDSLILFDEVGRGTSTYDGMSIAWSI 702
Query: 930 FRQLVE-RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYR 988
L + + +FATHYH LT+ L + F E K D+ L FL +
Sbjct: 703 LEYLSSLSVRPKTIFATHYHELTE---------LSRLGGIFNLYLETLEKEDRVL-FLRK 752
Query: 989 LTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ G +S+G+ VA +AGVP+ +V+ A+
Sbjct: 753 VKVGKAKKSFGIYVAKIAGVPEPIVKRAA 781
Score = 135 (52.6 bits), Expect = 1.8e-44, Sum P(3) = 1.8e-44
Identities = 33/111 (29%), Positives = 59/111 (53%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL--SGVGKCRQVGISESG 332
KQ+ +K + D +LFF++G FYE++ DA+I LD +T + V C GI
Sbjct: 26 KQFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTKRQNAVPMC---GIPYHS 82
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
D+ + +L+ G K+ EQ + E + +++R +V ++TP T ++
Sbjct: 83 KDNYISRLLNAGKKIAICEQSKPEEAG-----SKLMTRDVVRIITPGTVIE 128
Score = 76 (31.8 bits), Expect = 1.8e-44, Sum P(3) = 1.8e-44
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
TLY + C T+ GKRLL+ I P D + +R + + L+K + A L+
Sbjct: 279 TLYSIFNFCNTAKGKRLLKQRILFPECDPVVLYSRWEKQDILLKTVLAPYITA--LKDFG 336
Query: 619 DLERLLGRVK 628
DLER+L R +
Sbjct: 337 DLERILTRFR 346
Score = 47 (21.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRL 875
T L ++A+L F P E+CV T F L
Sbjct: 170 TGLERLIAELEKFKPSEICVPKSEHTFFQEL 200
Score = 40 (19.1 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 691 DGSDGLDK-FLTQFEAAIDSDFPD----YQNHDVTDL---DAETLSILIELFIEK 737
D +D L+ + QF AI DFPD ++ D ++ DA+ S ++++ + K
Sbjct: 15 DLADALNTPMMKQF-LAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTK 68
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 441 (160.3 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 107/300 (35%), Positives = 162/300 (54%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK-NPAVRQDNGG 788
L+ + A+ + V+ ++ VL V S + ++H P + K +P + G
Sbjct: 573 LVSEVVNVAASYCPVLEQLA--GVLAHLDVIVSFAHASVHAPTAYTKPKIHP---RGTGN 627
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
VLK HP ++ + ND+ L D L ++TGPNMGGKST +R +
Sbjct: 628 TVLKEAR--HPCMEMQDDISFITNDVSLIRDESSFL----IITGPNMGGKSTYIRMIGVI 681
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GCFVPC L++ D I R+GA+D + G STF+ E ET+++L+ AT +SL+
Sbjct: 682 ALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLI 741
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
I+DELGRGTST+DG+ +A+A+ +V I C LFATH+H LT +P A
Sbjct: 742 IIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNLHVVA 801
Query: 969 F-----KSNSENYS---KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
F +N E+ K Q++ LYR+ G C +S+G+ VA + P+KVV A A
Sbjct: 802 FIGDGTTANEEDEKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKA 861
Score = 112 (44.5 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV-VMVVAQYLRKLPDLER 622
L+ C T G RLL W+ PL D+ I R +VE + ++E+ M+ ++LR +PDL R
Sbjct: 325 LNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDLYR 384
Query: 623 LLGRVKARVQAS 634
L R + R QA+
Sbjct: 385 LAKRFQ-RKQAN 395
Score = 39 (18.8 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 604 SEVVMVVAQYLRKLPDLERLLG 625
SEVV V A Y P LE+L G
Sbjct: 575 SEVVNVAASYC---PVLEQLAG 593
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 410 (149.4 bits), Expect = 3.8e-44, Sum P(2) = 3.8e-44
Identities = 103/324 (31%), Positives = 173/324 (53%)
Query: 735 IEKASQ-W---SEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
IE AS W +++ IS ID+ SFA S RP++ + G V
Sbjct: 507 IEVASSYWEPFNKLSKIISQIDIFCSFAYVISQCISTYVRPIV-----------EQNGKV 555
Query: 791 LKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
L+IK HP + +PNDI + ++++ R ++TGPNMGGKST +R +
Sbjct: 556 LEIKNSRHPLVEANYLQIKNFIPNDIHMDKENN----RLNIITGPNMGGKSTYIRQIAII 611
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++A +GCFVP + + I R+G++D + G STF E E +++++ A D+LV
Sbjct: 612 SLMAHIGCFVPSTYAKIPIFSQIMCRIGSSDIQLKGISTFFSEMIEVSAIIKNADSDTLV 671
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
I+DELGRGTST++G+ I+++V L+ I C LFATH+H ++ H V+ H+
Sbjct: 672 IIDELGRGTSTYEGFGISWSVANYLLNNIKCLCLFATHFHEISNLEDEHAAVSNNHV--- 728
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
S + +++ FLY + G +SYG+ VA +A +PQKV++ + + ++
Sbjct: 729 ----SAKIDEAKKKISFLYEIKKGFADKSYGVHVAQIAKLPQKVIDKSFEKSKELESIEN 784
Query: 1029 ES-FKSS-EQRSEFSSLHEEWLKT 1050
+ FK+ + ++ +S+ + KT
Sbjct: 785 KHYFKNKLKSNNDNNSIEYDKAKT 808
Score = 141 (54.7 bits), Expect = 3.8e-44, Sum P(2) = 3.8e-44
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV--MVVAQYLRK 616
TLY L+ C T G+R L WI HP++D + IN RLD+VE +M + + + M+ +YLRK
Sbjct: 199 TLYKFLNKCKTKIGERKLLKWIMHPIRDEKKINQRLDMVE-IMNDDQALRSMIQGEYLRK 257
Query: 617 LPDLERLLGRVK 628
+ DL+ ++ ++K
Sbjct: 258 VCDLDLIIKKLK 269
Score = 40 (19.1 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 441 MQVSPKEVIYEN---RGLCKEAQKALRKFSAGSAAL 473
++V+ E+++ R LCK+ Q L ++ L
Sbjct: 467 VRVNKNEILFNTNKLRDLCKQYQYVLHSYNTSQEHL 502
Score = 39 (18.8 bits), Expect = 5.6e-33, Sum P(3) = 5.6e-33
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 111 KRNEQHGNSSTVCSV 125
K+N GNS+ C++
Sbjct: 287 KQNRSFGNSNNKCTI 301
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 396 (144.5 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 89/259 (34%), Positives = 144/259 (55%)
Query: 774 LPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGP 833
LP P + D+ + +K HP + + V NDI + + D R L++TGP
Sbjct: 747 LPNYTRPTLIDDD--LTILVKQARHP-TIEQLRPNYVANDININIEYDK--NRVLIITGP 801
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NMGGKS+ ++ L ++ Q+GC++PC+ + + D+IF R+GA D I+ G STF++E
Sbjct: 802 NMGGKSSYVKTVALLTVMTQIGCYLPCQNATMGIFDSIFIRMGANDNILKGYSTFMMEML 861
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE-RINCRLLFATHY---HP 949
+ +++ + SL+ILDE+GRGT T DG ++AY++ + L+E +LF THY H
Sbjct: 862 QCKNIISMMSNRSLIILDEIGRGTGTIDGISLAYSILKYLIESEFKPLVLFITHYPSIHV 921
Query: 950 LTKEFASHPHVTLQHMACAFKSNSENYSKGD-QELVFLYRLTSGACPESYGLQVAVMAGV 1008
L +E+ + V HM +N + G+ E++FLY L G SYGL VA +AG+
Sbjct: 922 LEQEYPNQLVVNY-HMGY---QEIKNNTPGEIPEIIFLYNLCRGVVNNSYGLNVAKLAGI 977
Query: 1009 PQKVVEAASHAALAMKKSI 1027
+++ A + +K I
Sbjct: 978 SHDIIKQAYRVSEKVKSDI 996
Score = 110 (43.8 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 38/174 (21%), Positives = 85/174 (48%)
Query: 212 RLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMS 271
+LL+ G K+ TT+K + ++ K ++ KR P E K+++
Sbjct: 55 KLLEFGFDGTKDSTSTRTTTTKSKDVEKRKSTTSSGSSFSSESKPKR----PKE--KRLT 108
Query: 272 ASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR--QVGIS 329
+KQ + Q+ D +L ++G Y+++ ++A K L+ + + R I
Sbjct: 109 PLEKQILELTEQHQDKILLIQIGYKYKVFGINALKVSKILNIMYISNDIEDTRFHYCSIP 168
Query: 330 ESGIDDAVEKLVARGYKVGRIEQLETS---EQAKARHTNSVISRKLVNVVTPST 380
++ + ++++++ GYKVG ++Q+E++ + K ++ V+ R++ V T +T
Sbjct: 169 DTRLHIHLQRILSHGYKVGVVKQIESTIVKQIEKTSKSSDVMRREVTGVYTKAT 222
Score = 91 (37.1 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN-SEVVMVVAQYLRKLP--DL 620
L++ T G RLL+ W+ PL ++ I +R +E L + VV ++ +L K+ DL
Sbjct: 443 LNNTKTIFGSRLLQKWVSRPLVHIQDIKDRHQAIEDLQSEYNHVVDSISNFLTKIKYLDL 502
Query: 621 ERLLGRV 627
E LL ++
Sbjct: 503 EGLLSKI 509
Score = 67 (28.6 bits), Expect = 2.3e-38, Sum P(4) = 2.3e-38
Identities = 34/134 (25%), Positives = 61/134 (45%)
Query: 337 VEKLVARGYKVGRIEQLETS--EQA-KARHTNSVISRKLVNVVTPSTTV-----DGTIGP 388
++++++ GYKVG ++Q+E++ +Q K ++ V+ R++ V T +T + + T G
Sbjct: 176 LQRILSHGYKVGVVKQIESTIVKQIEKTSKSSDVMRREVTGVYTKATYLGDESNENTKGS 235
Query: 389 -DAVHLLAIKEGNCGPD-----NGSVVYGFAFVDCAAL--RVWVGTINDDASCAALGALL 440
D + + + P+ N FA V L V + DD S L L
Sbjct: 236 WDGLSSSSSSSSSDVPEYIVCINEVSEKQFAIVAVQPLIGEVIFDSFKDDISRQELETRL 295
Query: 441 MQVSPKEVIYENRG 454
+ + P EVI G
Sbjct: 296 LYLRPVEVIVITNG 309
Score = 37 (18.1 bits), Expect = 2.3e-38, Sum P(4) = 2.3e-38
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 126 FGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPR 185
FG G +++S + T + KD V + G +E S P P R+ P
Sbjct: 59 FGFDGTKDSTSTRTTTT--KSKD-VEKRKSTTSSGSSFSSE-----SKPKRPKEKRLTPL 110
Query: 186 LKRILE 191
K+ILE
Sbjct: 111 EKQILE 116
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 441 (160.3 bits), Expect = 2.4e-43, Sum P(2) = 2.4e-43
Identities = 107/300 (35%), Positives = 162/300 (54%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK-NPAVRQDNGG 788
L+ + A+ + V+ ++ VL V S + ++H P + K +P + G
Sbjct: 573 LVSEVVNVAASYCPVLEQLA--GVLAHLDVIVSFAHASVHAPTAYTKPKIHP---RGTGN 627
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
VLK HP ++ + ND+ L D L ++TGPNMGGKST +R +
Sbjct: 628 TVLKEAR--HPCMEMQDDISFITNDVSLIRDESSFL----IITGPNMGGKSTYIRMIGVI 681
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GCFVPC L++ D I R+GA+D + G STF+ E ET+++L+ AT +SL+
Sbjct: 682 ALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLI 741
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
I+DELGRGTST+DG+ +A+A+ +V I C LFATH+H LT +P A
Sbjct: 742 IIDELGRGTSTYDGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNLHVVA 801
Query: 969 F-----KSNSENYS---KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
F +N E+ K Q++ LYR+ G C +S+G+ VA + P+KVV A A
Sbjct: 802 FIGDGTTANEEDEKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKA 861
Score = 112 (44.5 bits), Expect = 2.4e-43, Sum P(2) = 2.4e-43
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV-VMVVAQYLRKLPDLER 622
L+ C T G RLL W+ PL D+ I R +VE + ++E+ M+ ++LR +PDL R
Sbjct: 325 LNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDLYR 384
Query: 623 LLGRVKARVQAS 634
L R + R QA+
Sbjct: 385 LAKRFQ-RKQAN 395
Score = 39 (18.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 604 SEVVMVVAQYLRKLPDLERLLG 625
SEVV V A Y P LE+L G
Sbjct: 575 SEVVNVAASYC---PVLEQLAG 593
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 413 (150.4 bits), Expect = 6.6e-43, Sum P(4) = 6.6e-43
Identities = 111/318 (34%), Positives = 163/318 (51%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V LD L+ + +AS W + + S AV A + +H L ++K
Sbjct: 706 VAGLDELALATEHLAIVNRAS-WDSFLKSFSRYYTDFKAAVQALAALDCLHSLSTLSRNK 764
Query: 779 NPAVRQ---DNGGPV-LKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLT 831
N VR D+ PV + I+ HP L +N VPND +L + + C ++T
Sbjct: 765 N-YVRPEFVDDCEPVEINIQSGRHPVLETILQDNF---VPNDTILHAEGEYCQ----IIT 816
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNMGGKS +R L I+AQ+G FVP L + D +FTR+GA+D I G STFL E
Sbjct: 817 GPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEE 876
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951
+E + +++ + SLVILDELGRGTST DG AIAYA + L+ C +LF THY +
Sbjct: 877 LSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIA 936
Query: 952 KEFASHP-HVTLQHMA-CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVP 1009
+ P V H++ + + +Y D + +LY+L G C S+G +VA +A +P
Sbjct: 937 EISNGFPGSVGTYHVSYLTLQKDKGSYDHDD--VTYLYKLVRGLCSRSFGFKVAQLAQIP 994
Query: 1010 QKVVEAASHAALAMKKSI 1027
+ A A ++ +
Sbjct: 995 PSCIRRAISMAAKLEAEV 1012
Score = 105 (42.0 bits), Expect = 6.6e-43, Sum P(4) = 6.6e-43
Identities = 49/199 (24%), Positives = 89/199 (44%)
Query: 261 YIPP-EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG 319
Y+P + +K + ++Q +KS+Y DV+L +VG Y + DAEI + L +
Sbjct: 94 YVPETSSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDH 153
Query: 320 VGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTP 378
+ ++ V +LV GYK+G ++Q ET+ ++ + R L + T
Sbjct: 154 --NFMTASVPTFRLNFHVRRLVNAGYKIGVVKQTETAAIKSHGANRTGPFFRGLSALYTK 211
Query: 379 STTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFA--FVDCAA-LRVWVGTINDDASCA- 434
+T +A ++ G CG + G +G F+ C RV T+ +
Sbjct: 212 ATL-------EAAEDIS---GGCGGEEG---FGSQSNFLVCVVDERVKSETLGCGIEMSF 258
Query: 435 --ALGALLMQVSPKEVIYE 451
+G + +++S EV+YE
Sbjct: 259 DVRVGVVGVEISTGEVVYE 277
Score = 76 (31.8 bits), Expect = 6.6e-43, Sum P(4) = 6.6e-43
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
++ +T G RLLR W+ HPL D I+ RLD V
Sbjct: 449 MNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAV 482
Score = 49 (22.3 bits), Expect = 4.0e-37, Sum P(4) = 4.0e-37
Identities = 20/97 (20%), Positives = 47/97 (48%)
Query: 401 CGPDNG-SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
CG + V G V+ + V ND+ + L A+++ +SP E++ + L ++
Sbjct: 252 CGIEMSFDVRVGVVGVEISTGEVVYEEFNDNFMRSGLEAVILSLSPAELLL-GQPLSQQT 310
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL 496
+K L + ++ + + A ++ F + + V +++ L
Sbjct: 311 EKFLVAHAGPTSNVRVERA-SLDCFSNGNAVDEVISL 346
Score = 47 (21.6 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 337 VEKLVARGYKVGRIEQLETSEQAKARHTN--SVISRKLVNVVTPSTTVD 383
+E ++ G ++ R+ + SE + S + RKL++V++ VD
Sbjct: 553 MEAILLAGKQIQRLGIKQDSEMRSMQSATVRSTLLRKLISVISSPVVVD 601
Score = 41 (19.5 bits), Expect = 6.6e-43, Sum P(4) = 6.6e-43
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 36 TKQRNPVGDSSGQPT-VSAT 54
T + NPV +SS P +SAT
Sbjct: 21 THEPNPVAESSTPPPKISAT 40
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 395 (144.1 bits), Expect = 7.0e-43, Sum P(3) = 7.0e-43
Identities = 90/227 (39%), Positives = 134/227 (59%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
+PND+ L + + +++TGPNMGGKS+ +R L VI+AQ+GC+VP + S+ D
Sbjct: 778 MPNDVNLNREGK----KIMIITGPNMGGKSSYIRQVALLVIMAQIGCYVPAQEAEFSIFD 833
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+GA D ++ +STF +E TE +L+ +T++SL++LDE+GRGT T DG +I+YA+
Sbjct: 834 QIFTRIGAYDNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEVGRGTGTHDGISISYAL 893
Query: 930 FRQLVERIN-CRL-LFATHYHPLTKEFASHPHVTLQHMA-CAFKSNSENYSKGDQELVFL 986
R +E N C L LF THY L P + HM+ K EN+ +VFL
Sbjct: 894 LRYFIELHNACPLILFITHYASLGS--IRSPILGNYHMSYIEEKRPGENWPS----VVFL 947
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
Y+L G SYGL VA +A + ++ A + +K+ + ES S
Sbjct: 948 YKLKEGRAHNSYGLNVAKLADIQTGIINRAYKISTMLKQEM-ESNSS 993
Score = 100 (40.3 bits), Expect = 7.0e-43, Sum P(3) = 7.0e-43
Identities = 36/133 (27%), Positives = 68/133 (51%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELD-----WKITLSGVG-- 321
+++ +Q+ ++K Q+MD +L +VG Y+ + DA + + L K+T+
Sbjct: 139 RLTELDQQFKDLKLQHMDKVLAVRVGYKYKFFAEDAVMVSRVLQIKLVPGKLTVHETDPA 198
Query: 322 -----KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNV 375
K I ++ ++ +++L+ KVG +EQ ETS K T+S V SR++ N+
Sbjct: 199 DHKHKKFAYCTIPDTRLEVHLQRLMHHNLKVGVVEQTETSAVKKNSGTSSSVFSREVTNI 258
Query: 376 VTPSTT-VDGTIG 387
T +T ++ T G
Sbjct: 259 FTRATYGINETFG 271
Score = 96 (38.9 bits), Expect = 7.0e-43, Sum P(3) = 7.0e-43
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA--QYLR 615
G L+ LD T+ G R L++WI PL +++ I RLD V+ + + + + LR
Sbjct: 444 GSLLWVLDHTRTNYGLRNLKNWIAKPLINIDQIQQRLDAVQCISTEVGNIFIESLNNMLR 503
Query: 616 KLPDLERLLGRV 627
DLER+L R+
Sbjct: 504 DGQDLERILNRI 515
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 367 (134.2 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 85/223 (38%), Positives = 132/223 (59%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPNDI++ ++ + ++TGPNMGGKS+ +R L I+AQ+G FVP E LS+ +
Sbjct: 773 VPNDIMMSPENG----KINIITGPNMGGKSSYIRQVALLTIMAQIGSFVPAEEIRLSIFE 828
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+ TR+GA D I+ G+STF VE + +L+ + SL++LDE+GRGT T DG AI+YA+
Sbjct: 829 NVLTRIGAHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGTGTHDGIAISYAL 888
Query: 930 FRQLVERINCRL-LFATHYHPLTKEFASHPHVTLQHMACAFKSNS-ENYSKGDQELVFLY 987
+ E +C L LF TH+ P+ E S P + HM + + E++ ++FLY
Sbjct: 889 IKYFSELSDCPLILFTTHF-PMLGEIKS-PLIRNYHMDYVEEQKTGEDW----MSVIFLY 942
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK-SIGE 1029
+L G SYG+ VA +A + + ++ A + ++K SI E
Sbjct: 943 KLKKGLTYNSYGMNVAKLARLDKDIINRAFSISEELRKESINE 985
Score = 113 (44.8 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 29/67 (43%), Positives = 35/67 (52%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL---MKNSEVVMVVAQYLRKLPDL 620
LD TS G R+LR WI PL DV I RLD +E + + NS + Q L PDL
Sbjct: 444 LDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECITSEINNSIFFESLNQMLNHTPDL 503
Query: 621 ERLLGRV 627
R L R+
Sbjct: 504 LRTLNRI 510
Score = 104 (41.7 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 52/185 (28%), Positives = 82/185 (44%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDA-NRRRPD------DPLYDKRTLYIPPEALK----KM 270
KN E+ + T++ F +D +K D +RR D D + ++ +A K K+
Sbjct: 73 KNSEKTSGTSTTFNDIDFAKKLDRIMKRRSDENVEAEDDEEEGEEDFVKKKARKSPTAKL 132
Query: 271 SASQKQYWNVKSQYMDVLLFFKVGKFYELYELDA----EIGH-KELDWKITL--SGVGKC 323
+ KQ ++K + D +L +VG Y+ + DA I H K + K+T+ S C
Sbjct: 133 TPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESNPQDC 192
Query: 324 RQVGISESGIDDA-----VEKLVARGYKVGRIEQLETSEQAK---ARHTNSVISRKLVNV 375
+ D +E+LV KV +EQ ETS K +SV RK+ NV
Sbjct: 193 NHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKISNV 252
Query: 376 VTPST 380
T +T
Sbjct: 253 FTKAT 257
Score = 51 (23.0 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 32 SNFTTKQRNPV--GDSSGQPTV---SATEDSSLEIRGTDTPPEKVPRQ--ILPSGFKANE 84
S T KQ V G+ +G ++ + ED+ + T + P + + K +E
Sbjct: 17 SELTHKQEQEVAVGNGAGSESICLDTDEEDNLSSVASTTVTNDSFPLKGSVSSKNSKNSE 76
Query: 85 GTSGGSSLFSSI 96
TSG S+ F+ I
Sbjct: 77 KTSGTSTTFNDI 88
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 391 (142.7 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 100/303 (33%), Positives = 162/303 (53%)
Query: 716 NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
N + + +A + + FI+++++ +V + +D L SFAV A+ R L+ P
Sbjct: 671 NLKIRNEEANIIDLFKRKFIDRSNEVRQVATTLGYLDTLSSFAVLAN------ERNLVCP 724
Query: 776 Q-SKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPN 834
+ ++ + NG ++ +GL + N+ L +D+ ++TGPN
Sbjct: 725 KVDESNKLEVVNGRHLMVEEGL-----SARSLETFTANNCELAKDN------LWVITGPN 773
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
MGGKST LR + VILAQ+GCFVPC + + D +F+R+G+ D + STF+VE E
Sbjct: 774 MGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIE 833
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954
T+ +LQ AT+ SL ILDE+GRGTS +G +IAYA + L+E CR LFATH+ K+
Sbjct: 834 TSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQELKQI 893
Query: 955 ASHPHVTLQHMACAFKSNSENYSK-GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+ + M+ K + G + ++L G C +S ++VA +AG P + +
Sbjct: 894 IDNK--CSKGMSEKVKFYQSGITDLGGNNFCYNHKLKPGICTKSDAIRVAELAGFPMEAL 951
Query: 1014 EAA 1016
+ A
Sbjct: 952 KEA 954
Score = 101 (40.6 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 48/162 (29%), Positives = 73/162 (45%)
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
VT SG RLL W+ P D++ I R +V + N ++ + L+K+ DL R+L +
Sbjct: 396 VTPSGTRLLSQWLSGPSLDLKEIKKRQKIVAFFKDNRDITETLRTMLKKVNDLSRILQKF 455
Query: 628 K-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFK 686
R +A L LI + + ++V + K L L+ K + S F+
Sbjct: 456 SFGRGEA-----LELIQ---MARSLEVSREIRKYLLNNTSLMKATLKSQITQLTESLNFE 507
Query: 687 PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVT---DLDAE 725
+ D D L KFL + E A D QN DVT D+D +
Sbjct: 508 KNLID--DIL-KFLNEEELAKSQDAK--QNADVTRMLDIDVK 544
Score = 94 (38.1 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 44/178 (24%), Positives = 76/178 (42%)
Query: 284 YMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGV--GKCRQVGISESGIDDAVEKLV 341
Y D ++ ++G FYELY A EL+ +T GK G + ++ LV
Sbjct: 93 YKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGKVPFAGFPVHQLSRHLKMLV 152
Query: 342 AR-GYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP--DAVHLLAIK- 397
GY V EQ + + A N R++ +VTP T +D + +LL I+
Sbjct: 153 NNCGYSVTIAEQFKKKDVAD-NEANKFY-RRVTRIVTPGTFIDEAFENLRENTYLLNIEF 210
Query: 398 EGNCGPD--NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
NC + S+ G + D + ++V + L + + ++ PKE++ + R
Sbjct: 211 PENCMSQVADTSLKVGICWCDVSTGEIFVQQVY----LRDLVSAITRIQPKEILLDER 264
Score = 65 (27.9 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 19/85 (22%), Positives = 43/85 (50%)
Query: 213 LLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPE---ALKK 269
L ++ +A ++ ++ AD T + +D +++N+ D +++ R + P L+K
Sbjct: 518 LNEEELAKSQDAKQNADVTRMLD-IDVKDKKESNK----DEIFELRDFIVNPSFNTKLRK 572
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVG 294
+ + + W K++Y +L F VG
Sbjct: 573 LHDTYQGVWQKKTEYNALLKGFFVG 597
Score = 39 (18.8 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 341 VARGYKVGRIEQLETSEQAKARHTNSVISRKLVN 374
+ + + GR E LE + A++ + I + L+N
Sbjct: 451 ILQKFSFGRGEALELIQMARSLEVSREIRKYLLN 484
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 428 (155.7 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
Identities = 112/348 (32%), Positives = 190/348 (54%)
Query: 720 TDLDAETLSILIELF---IEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
T + + LSI+ E+ + A+ + + + ++ +D L SFA+ A + RP +L +
Sbjct: 566 TRYEEQQLSIVEEIIHVAVGYAAPLTLLNNELAQLDCLVSFAIAARSAPTPYVRPKMLEE 625
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
V +D P L+++ E+ + N + ++ +C ++TGPNMG
Sbjct: 626 GARELVLEDVRHPCLELQ---------EHVNF-IANSVDFKKE--EC--NMFIITGPNMG 671
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKST +R+ AV++A +G FVPC + +S+ D+I R+GA+D I+ G STF+VE ET+
Sbjct: 672 GKSTYIRSVGTAVLMAHIGAFVPCSLATISMVDSILGRVGASDNIIKGLSTFMVEMIETS 731
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
+++ AT SLVI+DELGRGTST++G IA+++ L + C LFATH+H +TK +
Sbjct: 732 GIIRTATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAET 791
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
V HMA +++++++ LY++ SG +S+G+QVA +A P+ VV+ A
Sbjct: 792 LSTVKNCHMAAV--ADADDFT-------LLYQVRSGVMEKSFGIQVARLANFPEHVVQNA 842
Query: 1017 SHAALAMK-KSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDD 1063
+ + + + K + E + + L T N VD N +D
Sbjct: 843 QEVYNEFEDEHVDKQKKEDKALLEKIQVAIQQLSTAGN--NVDINVED 888
Score = 108 (43.1 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPD--- 619
LD C T G RL+ W+ PL+ +N+R ++V+ L+++ + + ++ YL+++PD
Sbjct: 331 LDHCRTPQGHRLMGQWVKQPLRSRNILNDRHNIVQCLLESPDTMETLSLDYLKRIPDILM 390
Query: 620 LERLLGRVKARVQ 632
L + L R KA +Q
Sbjct: 391 LTKKLMRRKANLQ 403
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 417 (151.9 bits), Expect = 3.1e-42, Sum P(2) = 3.1e-42
Identities = 100/314 (31%), Positives = 176/314 (56%)
Query: 745 IHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
I +S +DVL SF+V S RP ++ +N +++ P+L+++ H +
Sbjct: 269 IDVVSTLDVLVSFSVVCYNSPFTYVRPALVKNGENVIMKKSRH-PLLELQ---HNIS--- 321
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
N +PNDI + ++ R +++TGPNMGGKST +R + ILAQ+G FVPC+ C
Sbjct: 322 NF---IPNDIHMNKNKS----RLIIVTGPNMGGKSTYIRQIAIICILAQIGMFVPCDFCE 374
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
+ + I R+GA+D + G STFL E E +++++ A +SL+I+DELGRGTST++G
Sbjct: 375 IPIFTQIMCRVGASDFQLKGISTFLSEMIEASAIIKNADNNSLIIVDELGRGTSTYEGLG 434
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
I++++ + +++ I C LFATH+H ++ V +H+ + +N +++
Sbjct: 435 ISWSIGKYILDNIKCFCLFATHFHEMSNIAYQCEGVINRHIETII--DQKN-----KKIC 487
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESF-KSSEQRSEFSSL 1043
FLY + GA +SYG+ VA +A +P+ V++ A ++ + + + K SS
Sbjct: 488 FLYEIKDGASNKSYGVNVAEIAKLPKDVIQKAYEKVEELESAENKYYLKEKLNIDTSSST 547
Query: 1044 HEEWLKTIVNVSRV 1057
+E++ I N ++
Sbjct: 548 NEKYKNNISNYVKI 561
Score = 96 (38.9 bits), Expect = 3.1e-42, Sum P(2) = 3.1e-42
Identities = 38/159 (23%), Positives = 78/159 (49%)
Query: 590 INNRLDVVEYLMKNSEVV-MVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKK-VL 647
IN RL++VE + ++ V YL+++P+L++L +K + + V ++ +L
Sbjct: 4 INQRLNIVETFIDEDDIRNSVFCNYLKRIPELDKLNHYLKEINKNNDIRVNSKYNEEMIL 63
Query: 648 KQQVKVFGSLVKGLRIAMDLLML--MHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEA 705
K VK++ +++ +I L+ + HKE +L+ I P+ D + KFL E
Sbjct: 64 KDIVKLYYAILDFKQIYFLLVSINGKHKE-----TLNEILIKPLHDILNKFSKFLDMIEM 118
Query: 706 AIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEV 744
ID + + + V + S L +++ EK++ ++
Sbjct: 119 TID--LKEIEENKVYLISKHFDSELEQIYNEKSALMKKI 155
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 304 (112.1 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 85/210 (40%), Positives = 116/210 (55%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D + E ++ L +LF + + + ++ +D L S A A ++ RP +L + K
Sbjct: 755 VIDCNHEWINFL-QLFGDHYYILRKAVCHLATMDCLFSLAQVAKENNYC--RPEVL-EEK 810
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ + PV I L +G+ VPND L D R +++TGPNMGGK
Sbjct: 811 SQILITAGKHPV--ITSL-----MGDQDQY-VPNDTHLQGDGK----RAMIITGPNMGGK 858
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ +R L I+AQLG FVP + + D I+ R+GA+D I G STF+ E ET+ V
Sbjct: 859 SSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGRSTFMEELLETSDV 918
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYA 928
L AT SLVILDELGRGTST DG AIAYA
Sbjct: 919 LACATSRSLVILDELGRGTSTHDGIAIAYA 948
Score = 162 (62.1 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 68/267 (25%), Positives = 119/267 (44%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKR---TLYIPPEALKKMSASQKQYWNVK 281
EE +F + +K NR+ ++P R T+Y P E +QY +K
Sbjct: 150 EEPIKVKQEFSFSQYAK-NTGNRKSLEEPSVSNRRTKTIYTPLE---------EQYMEIK 199
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
Q++D +L + G Y + DAEI KEL+ IT I + V +LV
Sbjct: 200 KQHVDTVLCVECGYKYRFFGEDAEIAAKELN--ITCHLDHNFMTASIPTHRLFVHVRRLV 257
Query: 342 ARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----------D 389
++GYKVG ++Q ET+ +A + + +S+ SR+L + T ST V + P D
Sbjct: 258 SQGYKVGVVKQTETTAIKASSANKSSLFSRQLHALYTKSTLVGEDVNPLLKLGDLEQAED 317
Query: 390 AV------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
V +L+ + E + + + G V + V V D+ S + L + ++++
Sbjct: 318 VVQDSGNNYLMCVSE-SFDKQSKELTVGMVVVQPSIGDVMVDCFKDNMSHSELESRILRI 376
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGS 470
P E++ + L + ++ LR + S
Sbjct: 377 QPVEILVPS-DLSETTERLLRNIALSS 402
Score = 121 (47.7 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 39/114 (34%), Positives = 54/114 (47%)
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVT 569
LE ++ F L H+ L+ ++N +IL + + G L+ LD T
Sbjct: 474 LEKILLCSSSFKRLSSDPDHM--LLSAATMKNLEILCNQTTGS---VKGSLLWVLDHTQT 528
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
GKRLLR W+ PLK V I R + V E L S V+ + L +LPDLER
Sbjct: 529 LFGKRLLRKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSIQSLLTRLPDLER 582
Score = 37 (18.1 bits), Expect = 8.3e-14, Sum P(3) = 8.3e-14
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 935 ERINCRLLFATHYHPLTK 952
E IN LF HY+ L K
Sbjct: 761 EWINFLQLFGDHYYILRK 778
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 414 (150.8 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 106/283 (37%), Positives = 160/283 (56%)
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
++ E+ + I ID ++SFA T S+ + + SK P + + G ++KI HP
Sbjct: 289 KFQELENMIGYIDCIQSFA-TVSIDNNQGY-------SK-PTIYESEKG-IIKIIKARHP 338
Query: 800 FALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
L EN + + NDI D D R ++TGPNMGGKST LR L VI+AQ+G F
Sbjct: 339 --LIENNSINSFIENDI----DIDRKETRFQIITGPNMGGKSTYLRMIGLCVIMAQIGMF 392
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
+PC +S+ D I R+GA D I+ G STF+ E +T+ +++K+T++SLV++DELGRGT
Sbjct: 393 IPCSEAHISICDKIMCRIGAGDNIVEGMSTFMSEMKDTSEIIKKSTKNSLVLIDELGRGT 452
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
ST+DG+ IA+A+ L I C +FATH+H +T V +H+
Sbjct: 453 STYDGFGIAWAISEYLAIDIGCYCVFATHFHEITGLEKRVTGVINKHVEADII------- 505
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
D++LV Y++ +G+ +S + VA A P +VVE+A A
Sbjct: 506 --DKQLVLKYKINNGSTDQSLAIYVAEWADFPHEVVESAKRKA 546
Score = 105 (42.0 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
Identities = 27/92 (29%), Positives = 54/92 (58%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLE 621
+L+ T G+++++ WI PL D + IN RL++VE NS + + + + L +PDLE
Sbjct: 34 HLNRTHTKIGEKMIKEWIKQPLIDKDKINKRLELVEGFYDNSGIRLKIKNEELAIIPDLE 93
Query: 622 RLL-GRVKARVQASSCIVLPLIGKKVLKQQVK 652
+L+ G K+ +++ + + K +K+++K
Sbjct: 94 KLIKGINKSDLESIVKLYEAVRISKNIKEELK 125
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 376 (137.4 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 117/372 (31%), Positives = 188/372 (50%)
Query: 662 RIAMDLLMLMHKEGHIIPSLSRIFKPPI-FDGSDGLDKFLTQFEAAI----DSDFPDYQN 716
++ DL + K+ + S ++++ + G++ +++F+ +F A+ +Q
Sbjct: 573 KLQEDLSKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKSTASFQL 632
Query: 717 HDVTDL--DAETLSILIELFIEKA--SQWSEVI--HAI--SCIDVLRSFAVTASMSSGAM 768
T L D E + I ++ S E++ H S + L ++ S+++ A
Sbjct: 633 PGWTSLGMDLENTKLHIHQEEQRVLKSITDEIVSHHKTLRSLANALDELDISTSLATLAQ 692
Query: 769 HRPLILP---QSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCL 824
+ + P S V Q P+++ KGL H +P PND +G + +
Sbjct: 693 EQDFVRPVVDDSHAHTVIQGRH-PIVE-KGLSHKL-------IPFTPNDCFVGNGNVNIW 743
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
L+TGPNM GKST LR + ILAQ+G FVP + + D IF+R+G+ D +
Sbjct: 744 ----LITGPNMAGKSTFLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQ 799
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
+STF+VE ET+ +L+ AT+ S VI+DE+GRGT+ DG AIAY + L + R LFA
Sbjct: 800 KSTFMVEMMETSFILKNATRRSFVIMDEIGRGTTASDGIAIAYGCLKYLSTINHSRTLFA 859
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
TH H LT S +V C + +N + + D F Y+L G +S+GL+VA
Sbjct: 860 THAHQLTNLTKSFKNVE-----C-YCTNL-SIDRDDHTFSFDYKLKKGVNYQSHGLKVAE 912
Query: 1005 MAGVPQKVVEAA 1016
MAG+P+ V+ AA
Sbjct: 913 MAGIPKNVLLAA 924
Score = 106 (42.4 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 556 RMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
R G L+ ++ VT SG RLL +C P ++ INNRLD+VE E+ V L
Sbjct: 363 RYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKVINLL 422
Query: 615 RKLPDLERLL 624
+K D R+L
Sbjct: 423 KKSNDTHRIL 432
Score = 98 (39.6 bits), Expect = 7.4e-42, Sum P(3) = 7.4e-42
Identities = 52/217 (23%), Positives = 93/217 (42%)
Query: 250 PDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAE-IGH 308
P D + K + +PP LK++S QK++ D +L KVG FYE+Y AE IG
Sbjct: 48 PLDFIRPKEKVTLPP-LLKEVSFQQKKF-------ADCVLLTKVGNFYEMYFEQAEKIGP 99
Query: 309 KELDWKITLSGVGKC--RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS 366
L+ +++ K G +D ++ LV K + + E + +
Sbjct: 100 L-LNLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCVALSE-EVIRPVDDLSSKN 157
Query: 367 VISRKLVNVVTPSTTVDGT-IGP-DAVHLLAIK-EGNC-GPD---NGSVVYGFAFVDCAA 419
+ R + V+TP T +D + P ++ ++L + + N D G+ F DC
Sbjct: 158 MYIRSVTRVITPGTLIDENFMNPYESNYILTVVFDPNFFSSDISNQGTAEDKDCFADCKI 217
Query: 420 LRVWVGT-----INDDASCAALGALLMQVSPKEVIYE 451
W+ D++ L L ++SP+E++ +
Sbjct: 218 GLSWLDLSTGEFFTQDSNLQRLAGDLTRISPREIVLD 254
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 448 (162.8 bits), Expect = 3.5e-41, P = 3.5e-41
Identities = 91/199 (45%), Positives = 122/199 (61%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R +++TGPNMGGKS+ ++ L VI+AQ+G +VP E + + D IFTR GA D I G
Sbjct: 8 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGR 67
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+ E T+TA ++QKATQ SLVILDELGRGTST DG AIAYA + + LF T
Sbjct: 68 STFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVT 127
Query: 946 HYHPLTKEFASHPH-VTLQHMACAFKSNSENYSKGDQE-----LVFLYRLTSGACPESYG 999
HY P+ + +P V HM + GD E + FLY++T G SYG
Sbjct: 128 HYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAARSYG 187
Query: 1000 LQVAVMAGVPQKVVEAASH 1018
L VA +A VP+++++ A+H
Sbjct: 188 LNVAKLADVPREILQKAAH 206
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 447 (162.4 bits), Expect = 4.4e-41, P = 4.4e-41
Identities = 103/301 (34%), Positives = 167/301 (55%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + +++ + +S + E + ++ DVL S + + P+ P + P + +
Sbjct: 88 EAQNAIVKEIVNISSGYVEPMQTLN--DVLAQLDAVVSFAHVSNGAPV--PYVR-PVILE 142
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G + +K H ++ +PND+ +D ++TGPNMGGKST +R
Sbjct: 143 KGQGRIT-LKASRHACVEVQDEVAFIPNDVHFEKDKQ----MFHIITGPNMGGKSTYIRQ 197
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L+ AT+
Sbjct: 198 TGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 257
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V H
Sbjct: 258 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 317
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ A + ++ L LY++ G C +S+G+ VA +A P+ V+E A AL ++
Sbjct: 318 VT-ALTT--------EETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELE 368
Query: 1025 K 1025
+
Sbjct: 369 E 369
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 387 (141.3 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 102/306 (33%), Positives = 159/306 (51%)
Query: 718 DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
++ D + L L I +++ + + +DVL SFA+ AS + L+ PQ
Sbjct: 667 ELLDEERYILDNLQRKIITYSTEIRAIAQTVDYLDVLSSFAILAS------EKNLVCPQV 720
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGG 837
+ + GG L ++ A G ND L ++ D ++TGPNMGG
Sbjct: 721 DESSALEIVGGRHLVVEDGLQSRAPGNF----TANDCSL-QNGD-----IWIVTGPNMGG 770
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KST LR T + VILAQ+GC+VPC + L D IF+R+G+ D + STF+VE ET+
Sbjct: 771 KSTFLRQTAIIVILAQIGCYVPCASAHIGLVDKIFSRVGSADDLYNDMSTFMVEMLETSF 830
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY-HPLTKEFAS 956
+L+ AT+ SL ILDE+GRGT+ DG IAY ++ + CR LFA+H+ L++
Sbjct: 831 MLKGATKRSLAILDEIGRGTNAEDGVGIAYTTLHHMLTKNRCRALFASHFGRELSELVEQ 890
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H + +++N ++ G + +++T G C S ++VA MAG PQ+ ++ A
Sbjct: 891 HLPPGARKRVHFYRTNVREHN-GRS--FYDHKITPGICLSSDAIRVAQMAGFPQEALDVA 947
Query: 1017 SHAALA 1022
A
Sbjct: 948 RRVLAA 953
Score = 96 (38.9 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 43/190 (22%), Positives = 81/190 (42%)
Query: 279 NVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGV--GKCRQVGISESGIDDA 336
++ +Y D +L ++G FYELY AE +L+ +T GK G +
Sbjct: 82 DMMDKYPDYVLLTQMGSFYELYYEHAEKYAPKLNITLTRREYSHGKVPFAGFPLEQLSRH 141
Query: 337 VEKLVAR-GYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG--PDAVHL 393
++ LV GY V +EQ + A +R++ VVTP T +D + L
Sbjct: 142 LKVLVKEYGYSVAVVEQFRKDDIADNERYK--FNRRVTRVVTPGTFIDEAFENLQENQFL 199
Query: 394 LAIK-EGNCGP--DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
L+++ C + S+ G ++ D + ++V + L + + ++ P+E++
Sbjct: 200 LSVEFPDRCMEKLSDPSIKVGLSWCDISTGELFVQQVQ----LKGLISAITKIKPREILL 255
Query: 451 ENRGLCKEAQ 460
L + Q
Sbjct: 256 SEDLLAYQIQ 265
Score = 89 (36.4 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 548 YKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+ +RD L+ + VT SG RLL W+ P ++ I R ++V M+N V
Sbjct: 370 HNTFRDNLKRGSLLSAIRRTVTPSGTRLLTQWLSAPSMHLDEIKQRQNLVRLFMQNPFVT 429
Query: 608 -MVVAQYLRKLPDLERLL 624
++AQ L+ D+ R+L
Sbjct: 430 DNLIAQ-LKATADMTRIL 446
Score = 47 (21.6 bits), Expect = 1.4e-35, Sum P(4) = 1.4e-35
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 524 LGGLISHLSRLMLDDVLRNGDILPYKV 550
L GLIS ++++ ++L + D+L Y++
Sbjct: 238 LKGLISAITKIKPREILLSEDLLAYQI 264
Score = 39 (18.8 bits), Expect = 1.4e-35, Sum P(4) = 1.4e-35
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
+ LR+++ AA ++ P +A F + +V Q+ + S P K
Sbjct: 15 RILRRYTIVPAARDINPVVAKLKF--SLDVIPATQIESQESDDSEPNKK 61
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 393 (143.4 bits), Expect = 2.6e-40, Sum P(4) = 2.6e-40
Identities = 104/281 (37%), Positives = 156/281 (55%)
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
++ E+ +DV S A+ A ++ P ++ K P + + G V+ ++
Sbjct: 657 EFRELAGLADFLDVTSSLAIVAEENNWTC--PKLI---KTPRLSVEGGRHVV-VES---- 706
Query: 800 FALGENGGLPVPNDILLGEDSDDCLPRTL-LLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
+L ++G + +PND +G D TL +++GPNMGGKST LR L VILAQ+G FV
Sbjct: 707 -SLKDSGNMFIPNDSKMGTDG------TLWVISGPNMGGKSTYLRQNALIVILAQIGSFV 759
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
P E + L D IFTR+GATD + STF+VE E +++L AT SL I+DE+GRGTS
Sbjct: 760 PAEKATIGLVDKIFTRIGATDDLFNDLSTFMVEMVEVSNILTNATPSSLAIVDEIGRGTS 819
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS-ENYS 977
+G AIAYA L++ CR LFATH+ ++ ++ +++ F++ EN
Sbjct: 820 GKEGLAIAYATLLSLLQVNKCRTLFATHFGKELEQLLVANNIDQKNIRY-FRTRVLEN-- 876
Query: 978 KGDQELVFL--YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
GD E F+ + L G S+ L VA MAG P+ ++AA
Sbjct: 877 -GDNEKGFVIDHTLEPGISERSHALDVARMAGFPENALKAA 916
Score = 102 (41.0 bits), Expect = 2.6e-40, Sum P(4) = 2.6e-40
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
+C TSSG RLL WI P D + I R V+ +KN + +V Q+L++L D R L
Sbjct: 356 TC-TSSGTRLLTEWIKSPSLDTKDIEKRQSFVKMFLKNQHLKIVTRQHLQQLGDFIRNLQ 414
Query: 626 RV 627
++
Sbjct: 415 KL 416
Score = 67 (28.6 bits), Expect = 2.6e-40, Sum P(4) = 2.6e-40
Identities = 26/95 (27%), Positives = 41/95 (43%)
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGK--CRQVGISESGIDDAVEKLV-ARGYKVG 348
+VG FYELY AE +L KI G + + E L+ + V
Sbjct: 71 QVGSFYELYFEQAEEYGPKLGLKIAKKKTSNHVVPFAGFPTTQLRKFTEMLIHEQQVNVA 130
Query: 349 RIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
I+Q + Q + N ++ RK+ ++TP T +D
Sbjct: 131 IIDQCD---QGSKTNQN-LVHRKISRIITPGTLID 161
Score = 44 (20.5 bits), Expect = 2.6e-40, Sum P(4) = 2.6e-40
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 696 LDKFLTQFEAAIDSDFPDYQNHDVTDLDAETL-SILIELFIEKASQWSEVIHAISCIDV 753
L+K+ ++ E D++ D D + + L L EL +E+ WS++ + + IDV
Sbjct: 513 LEKYRSKQEGNTDAENFYSVKRDFND-ELKILHDELSELEVEEHKLWSKLRNVLDDIDV 570
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 437 (158.9 bits), Expect = 5.2e-40, P = 5.2e-40
Identities = 91/201 (45%), Positives = 122/201 (60%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRL--GATDRIMT 883
R +++TGPNMGGKS+ ++ L VI+AQ+G +VP E + + D IFTR GA D I
Sbjct: 7 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADNIYK 66
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G STF+ E T+TA ++QKATQ SLVILDELGRGTST DG AIAYA + + LF
Sbjct: 67 GRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLF 126
Query: 944 ATHYHPLTKEFASHPH-VTLQHMACAFKSNSENYSKGDQE-----LVFLYRLTSGACPES 997
THY P+ + +P V HM + GD E + FLY++T G S
Sbjct: 127 VTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAARS 186
Query: 998 YGLQVAVMAGVPQKVVEAASH 1018
YGL VA +A VP+++++ A+H
Sbjct: 187 YGLNVAKLADVPREILQKAAH 207
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 454 (164.9 bits), Expect = 2.5e-39, P = 2.5e-39
Identities = 153/511 (29%), Positives = 245/511 (47%)
Query: 528 ISHLSRLMLDDVLRNGDILPY-KVYRDCLRMD----GQTLYLDSCVTSSGKRLLRSWICH 582
IS + RL+ R G + K+Y+ +R+ Y + +R L+
Sbjct: 377 ISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEFASLISERYLKK--LE 434
Query: 583 PLKDVEGINNRLDVVEYL-----MKNSEVVMVVAQY---LRKLPDLERLLGRVKARVQAS 634
L D + + +D+VE ++N E M+ + Y L L D + LL + +
Sbjct: 435 ALSDQDHLGKFIDLVECSVDLDQLENGEY-MISSSYDTKLASLKDQKELLEQQIHELHKK 493
Query: 635 SCIVLPLIGKKVLK-QQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS 693
+ I L L K LK + FG + RI + K+ + K + +
Sbjct: 494 TAIELDLQVDKALKLDKAAQFGHV---FRITKKEEPKIRKKLTTQFIVLETRKDGVKFTN 550
Query: 694 DGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
L K Q+++ +D D+ Q ++ D ET++ E+F + A SE+ DV
Sbjct: 551 TKLKKLGDQYQSVVD-DYRSCQK-ELVDRVVETVTSFSEVFEDLAGLLSEM-------DV 601
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPND 813
L SFA A+ P P + P + + G ++ ++G HP ++ +PND
Sbjct: 602 LLSFADLAASC------PT--PYCR-PEITSSDAGDIV-LEGSRHPCVEAQDWVNFIPND 651
Query: 814 ILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFT 873
L ++TGPNMGGKST +R + V++AQ+G FVPC+ +S+ D IF
Sbjct: 652 CRLMRGKS----WFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFA 707
Query: 874 RLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL 933
R+GA D + G STF+ E ETAS+L+ A+ SL+I+DELGRGTST+DG+ +A+A+ L
Sbjct: 708 RVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHL 767
Query: 934 VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
V+ LFATH+H LT ++ V+ + A S + ++L LY++ GA
Sbjct: 768 VQVKRAPTLFATHFHELTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGA 827
Query: 994 CPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
C +S+G+ VA A P+ VV A A ++
Sbjct: 828 CDQSFGIHVAEFANFPESVVALAREKAAELE 858
Score = 137 (53.3 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 69/251 (27%), Positives = 111/251 (44%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE-NRGLCKEAQKAL 463
+G V G A+VD + + DD+ L + L+ + KE I+ G E K+L
Sbjct: 153 DGRCVIGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIFPAESGKSNEC-KSL 211
Query: 464 RKFSAGSAALELTPAMAVTDF----LDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDI 519
S A+ +T +F LD S++K+LV+ G+ P + V D+
Sbjct: 212 YD-SLERCAVMITERKK-HEFKGRDLD-SDLKRLVK------GNIEP---VRDLVSGFDL 259
Query: 520 GFSALGGLISHLSRLMLDD-----VLRNGDI-----LPYKVYRDCLRMDGQT-------- 561
ALG L+S L +D +R DI L R M+ +T
Sbjct: 260 ATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVMESKTDANKNFSL 319
Query: 562 --LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L +C GKRLL W+ PL D+ I RLD+V+ ++ + + + Q+L+++ D
Sbjct: 320 FGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISD 379
Query: 620 LERLLGRVKAR 630
+ERLL ++ R
Sbjct: 380 VERLLRSLERR 390
Score = 130 (50.8 bits), Expect = 0.00025, P = 0.00025
Identities = 34/101 (33%), Positives = 55/101 (54%)
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
+C GKRLL W+ PL D+ I RLD+V+ ++ + + + Q+L+++ D+ERLL
Sbjct: 326 TCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLLR 385
Query: 626 RVKAR---VQA-----SSCIVLPLIGKKVLKQQVKVFGSLV 658
++ R +Q S I LP I K ++Q F SL+
Sbjct: 386 SLERRRGGLQHIIKLYQSTIRLPFI-KTAMQQYTGEFASLI 425
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 372 (136.0 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 100/283 (35%), Positives = 149/283 (52%)
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGG 807
+D+ S A A+ + + RP IL S Q G + + G HP +L G
Sbjct: 906 LDIATSLARLATEQN--LVRP-ILHDSSTTNGSQGMGTRTVIVGGR-HPTVEPSLLSRGM 961
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
ND L+G + L+TGPNM GKST LR L ILAQ+GC+VP + L +
Sbjct: 962 TFQKNDCLIGSPGQGAI---WLITGPNMAGKSTFLRQNALITILAQMGCYVPADYAELGI 1018
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IF+R+G+ D + +STF+VE ETA++L++AT S VI+DE+GRGT+ DG A+A+
Sbjct: 1019 VDAIFSRVGSADNLYADQSTFMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVAF 1078
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS-NSENYSKGDQE---- 982
A L+ CR LFATH+H + V + A S Y +E
Sbjct: 1079 ASLHHLLTVNKCRGLFATHFHAVGDMLKEQGLVVEDGASSAGASWGVAMYCTDVEEDESG 1138
Query: 983 -LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
V++++L G +S+ L+VA +AG+P+ ++ A LA++
Sbjct: 1139 GFVYVHKLRKGMNRQSHALKVARLAGLPEPAIKIAQQV-LAVQ 1180
Score = 93 (37.8 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
VT SG RLL W+ P + IN+RLD++ + N ++ + L + D +RL+
Sbjct: 518 VTKSGARLLNEWLSAPSTSLSVINSRLDLITRFISNPDLSDAITVLLHRSHDTQRLV 574
Score = 79 (32.9 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 44/187 (23%), Positives = 80/187 (42%)
Query: 213 LLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRR-------PDDPLYDKRTLYIPPE 265
+L +++ VK EEA + E +PS R ++ R P L + PP
Sbjct: 199 MLDEALLPVKEATEEA---ADVEQNEPSTQRKRDKTRTVRLKEIPQGALLPDESF--PPR 253
Query: 266 ALKKMSASQ----KQYWNVKSQYMDVLLFFKVGKFYELY-ELDAEIGHKELDWKIT---L 317
+ + +Q+ + ++ + +L +VG FYE+Y E E+G L+ K++
Sbjct: 254 QQEDQEPAYPAVIQQHRHNMQKFDNCVLLTRVGGFYEMYFEHAEEVGPL-LNLKVSQKKT 312
Query: 318 SGVGKCRQVGISESGIDDAVEKLVAR-GYKVGRIEQLETSEQAKARHTNSVISRKLVNVV 376
SG G G +D ++ LV V E+ S + + + +R++ +V
Sbjct: 313 SG-GPVSMAGFPFFQLDRYLKVLVEDLNRHVAIAEEYRNSPSEQIKSGGLMHNRRVTRIV 371
Query: 377 TPSTTVD 383
TP T +D
Sbjct: 372 TPGTLID 378
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 365 (133.5 bits), Expect = 5.3e-37, Sum P(2) = 5.3e-37
Identities = 98/294 (33%), Positives = 152/294 (51%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + P+ N+ + E S+ L++TGPNM GKST L+ L I
Sbjct: 506 LAIKQGWHPILEKISVEKPIANNTYITEGSN-----FLIITGPNMSGKSTYLKQIALCQI 560
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E +A+ IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 561 MAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILI 620
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTST +G I YAV L+ + LFATH+ L A +P+V H
Sbjct: 621 DELGRGTSTEEGIGICYAVCEYLLS-LKAFTLFATHFLELCHIEALYPNVENMHFEV--- 676
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ ++ S+ + +++ Y+L G E +YGL+ A ++ +P +V A + + I +
Sbjct: 677 QHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITAQITRQILQ 736
Query: 1030 SFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
+ +S+ + +++ L T +V +R NS D D+L LK Y+
Sbjct: 737 NQRSTPEMERQRAVYH--LATRLVQTAR---NSQLDP--DSLRMYLSNLKKKYE 783
Score = 119 (46.9 bits), Expect = 5.3e-37, Sum P(2) = 5.3e-37
Identities = 70/269 (26%), Positives = 115/269 (42%)
Query: 377 TPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
T S+ V T P + +A+ EG G G + G A +D + ++ + D+ + A +
Sbjct: 6 TSSSAVS-THSPSVI--VAVVEGR-GHARGEI--GMASIDLRSPQIILSQFADNTTYAKV 59
Query: 437 GALLMQVSPKEVIYENRG-----------LCKEAQKAL------RKFSAGSAALELTPAM 479
L +SP E+I N L E K + RK+ + LE +
Sbjct: 60 ITKLKILSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQL 119
Query: 480 AVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRL-MLDD 538
+T+F S V VQ Y + + K +E + +L + M+D
Sbjct: 120 CITEF---STVLMEVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLKICFQGSEQTAMIDS 176
Query: 539 V-LRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
+N ++L +DC + TL+ L+ T G R LRS I PL D+E IN RLD
Sbjct: 177 SSAQNLELLINN--QDC--RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLD 232
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
V+ L+++ E+ + + + D E+LL
Sbjct: 233 CVQELLQDEELFFGLQSVISRFLDTEQLL 261
Score = 38 (18.4 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 95 KNVNFTTIQRKYFNETKG 112
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 365 (133.5 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 98/294 (33%), Positives = 152/294 (51%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + P+ N+ + E S+ L++TGPNM GKST L+ L I
Sbjct: 638 LAIKQGWHPILEKISVEKPIANNTYITEGSN-----FLIITGPNMSGKSTYLKQIALCQI 692
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E +A+ IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 693 MAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANNKSLILI 752
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTST +G I YAV L+ + LFATH+ L A +P+V H
Sbjct: 753 DELGRGTSTEEGIGICYAVCEYLLS-LKAFTLFATHFLELCHIEALYPNVENMHFEV--- 808
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ ++ S+ + +++ Y+L G E +YGL+ A ++ +P +V A + + I +
Sbjct: 809 QHVKDTSRNKEAILYTYKLCKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITAQITRQILQ 868
Query: 1030 SFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
+ +S+ + +++ L T +V +R NS D D+L LK Y+
Sbjct: 869 NQRSTPEMERQRAVYH--LATRLVQTAR---NSQLDP--DSLRMYLSNLKKKYE 915
Score = 119 (46.9 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 70/269 (26%), Positives = 115/269 (42%)
Query: 377 TPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
T S+ V T P + +A+ EG G G + G A +D + ++ + D+ + A +
Sbjct: 138 TSSSAVS-THSPSVI--VAVVEGR-GHARGEI--GMASIDLRSPQIILSQFADNTTYAKV 191
Query: 437 GALLMQVSPKEVIYENRG-----------LCKEAQKAL------RKFSAGSAALELTPAM 479
L +SP E+I N L E K + RK+ + LE +
Sbjct: 192 ITKLKILSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQL 251
Query: 480 AVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRL-MLDD 538
+T+F S V VQ Y + + K +E + +L + M+D
Sbjct: 252 CITEF---STVLMEVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLKICFQGSEQTAMIDS 308
Query: 539 V-LRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
+N ++L +DC + TL+ L+ T G R LRS I PL D+E IN RLD
Sbjct: 309 SSAQNLELLINN--QDC--RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLD 364
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
V+ L+++ E+ + + + D E+LL
Sbjct: 365 CVQELLQDEELFFGLQSVISRFLDTEQLL 393
Score = 38 (18.4 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 227 KNVNFTTIQRKYFNETKG 244
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 394 (143.8 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 96/232 (41%), Positives = 127/232 (54%)
Query: 788 GPVLKIKGLWHP---FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G KI G HP L E G V ND LGE R L+TGPNM GKST LR
Sbjct: 683 GTNYKIIGGRHPTVKLGLEEQGRRFVSNDCFLGESE-----RIWLITGPNMAGKSTFLRQ 737
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L ILAQ+G FVP + + + D IF+R+GA D + +STF+VE ETA++L++AT
Sbjct: 738 NALITILAQVGSFVPADYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETAAILKQATA 797
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
S VI+DE+GRGT+ DG A+++A L R CR LFATH+H L P L
Sbjct: 798 RSFVIMDEVGRGTTPEDGTAVSFACLHHLHYRNQCRTLFATHFHGLADMTQEFP--ALGR 855
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
K +E F+++L G ES+ L+VA +AG+P + +E A
Sbjct: 856 YCTDVKETTEG------RFSFVHKLRKGINRESHALKVAQLAGLPSETLELA 901
Score = 88 (36.0 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 31/108 (28%), Positives = 50/108 (46%)
Query: 279 NVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL--SGVGKCRQVGISESGIDDA 336
N ++ + ++ +VG FYELY AE L+ K+ + G G +D
Sbjct: 101 NNMQKFKNCVVLTRVGGFYELYFEQAEELAPLLNLKLATKKTSAGPVPMAGFPFFQLDRF 160
Query: 337 VEKLVARGYKVGRI-EQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
++ LV K I E+ S + KAR + + RK+ V+TP T +D
Sbjct: 161 LKILVQDLNKFVAISEEFAISAEEKAR-SGMLFDRKVARVITPGTLID 207
Score = 44 (20.5 bits), Expect = 5.0e-32, Sum P(2) = 5.0e-32
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 18 NKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSS 58
N+ AAD++ K T +R +SS T D+S
Sbjct: 494 NEGAAADLASLPKKVREKTTERTATDESSPDETWIMRRDAS 534
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 377 (137.8 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 110/336 (32%), Positives = 169/336 (50%)
Query: 718 DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
++ L A+++ LIE + S+ + +IS +D F V SGA++ L L QS
Sbjct: 693 EIIILSAQSIEKLIEFYRSHISELYNISESISLLD----FLV-----SGALYS-LQLDQS 742
Query: 778 KNPAVRQDNG-GPVLKIKGLWHPFALGENGGLP------VPNDILLGEDSDDCLPRTLLL 830
P + NG GP L IK +HP L ++ VPND L+ E + L+
Sbjct: 743 VCPEIF--NGKGP-LAIKSGYHPLQLKKSKKKESFSTCFVPNDTLINETAS-----FQLI 794
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
G NM GKST ++ L I+A +G F+P E + + D I +RLG +D I + STF+
Sbjct: 795 HGCNMSGKSTYIQQVALLTIVAHIGYFLPAEFATVPIVDQIISRLGTSDNIQSNASTFMT 854
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E E + +L+ T+ SLVI+DELGRGTS DG +IA+++ L I C LF THY L
Sbjct: 855 EMKEISYILENTTESSLVIIDELGRGTSNMDGSSIAWSISEHL-SMIGCYTLFVTHYQQL 913
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACP-ESYGLQVAVMAGVP 1009
+P++ + H F+ + ++ S G L + Y + G +SYG++ A +AG+
Sbjct: 914 LNLATFYPNIRVYH----FQVSKDD-SSG---LKYNYLFSEGVSSIDSYGVETAELAGID 965
Query: 1010 QKVVEAASHAA-LAMKKSIGESFKSSEQRSEFSSLH 1044
KV+++A L KS + + H
Sbjct: 966 SKVIQSAKTIRNLLESKSNNNQINPNTNNQSINQYH 1001
Score = 103 (41.3 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
TLY +++ TS G RLL S I P D E I +R + ++ L+ N VV + L K+
Sbjct: 420 TLYQSINNTSTSQGSRLLISAIVQPSNDFETIKHRQNAIKQLLSNQRVVFTLTPLLSKIQ 479
Query: 619 DLERLL 624
D+++ L
Sbjct: 480 DIDKTL 485
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 342 (125.4 bits), Expect = 7.7e-36, Sum P(2) = 7.7e-36
Identities = 83/232 (35%), Positives = 123/232 (53%)
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
+ GP L I HP + V N I + E ++ L++ GPNM GKST L+
Sbjct: 514 DSGP-LAIDAGRHPILESIHNDF-VSNSIFMSEATN-----MLVVMGPNMSGKSTYLQQV 566
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
CL VILAQ+GC+VP + + D IFTR+G D + + STF+ E ETA ++Q T
Sbjct: 567 CLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNR 626
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+++DELGR TS+ DG A+A++ L+ + +FATH L + +P+V + H
Sbjct: 627 SLIVMDELGRATSSSDGLAMAWSCCEYLLS-LKAYTVFATHMDSLAELATIYPNVKVLHF 685
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACP-ESYGLQVAVMAGVPQKVVEAA 1016
+ N L F ++L G YGL +A +AG+P V++ A
Sbjct: 686 YVDIRDN---------RLDFKFQLRDGTLHVPHYGLLLAEVAGLPSTVIDTA 728
Score = 132 (51.5 bits), Expect = 7.7e-36, Sum P(2) = 7.7e-36
Identities = 34/106 (32%), Positives = 61/106 (57%)
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP-DLERLLGRV 627
T+ G RLLR+ + PLKD+E IN RLD ++ LM N ++ ++Q LRK P + +R+L
Sbjct: 204 TAGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHF 263
Query: 628 KARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
+ + + +IG + ++ + S++ L+ A+D L ++ K
Sbjct: 264 CFKPKK---VTEAVIGFENTRKSQNMISSIIL-LKTALDALPILAK 305
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 365 (133.5 bits), Expect = 9.5e-36, Sum P(3) = 9.5e-36
Identities = 99/330 (30%), Positives = 176/330 (53%)
Query: 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
+E + ++ L + + ++ +DV+ FA TA ++S +P + P + R
Sbjct: 544 SEVIKEILSLTLTYEPVLQSLSSTLAHLDVITCFATTAMLNSYT--QPKLFPFESS---R 598
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
+ N +++ + HP ++ + ND+ + DD ++TGPNMGGKST +R
Sbjct: 599 KIN---LIESR---HPLLEVQDDINFISNDVKM----DD--KHFAIITGPNMGGKSTYIR 646
Query: 844 ATCLAVILAQLGCFVPC-EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
++AQ+G F+P + L + D I +R+GA D + G STF++E ET+S+L A
Sbjct: 647 QIGTIALMAQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSILATA 706
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T +SL+I+DELGRGTST+DG+ +A+A+ +L++R C +FATH+H L++ S + +
Sbjct: 707 TANSLIIIDELGRGTSTYDGFGLAWAISEELIKR-KCFAVFATHFHELSQ--LSEKYDGV 763
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA-- 1020
+++ + +E ++ +Y++ G S+G+ VA +P+K+V A
Sbjct: 764 ENLNLMAEQTNE-------DITLIYKVGPGISNTSFGISVAEKLHMPEKIVNMAKRKVEE 816
Query: 1021 LAMKKSIGESFKSSEQRSEFSSLHE---EW 1047
L+ + I + +E R S L E EW
Sbjct: 817 LSEEPPIKKQCSETEVREGMSRLREILKEW 846
Score = 114 (45.2 bits), Expect = 9.5e-36, Sum P(3) = 9.5e-36
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L C T G RLL W+ PL D+ I R ++V+ ++ ++ + + + ++L K+PD+ RL
Sbjct: 302 LFKCKTLGGSRLLSQWLKQPLIDLSLIEERQELVKAMIDDTSLRVEIQEFLSKVPDINRL 361
Query: 624 LGRVKARVQAS 634
L ++ V+ S
Sbjct: 362 LKKIGLGVKRS 372
Score = 41 (19.5 bits), Expect = 9.5e-36, Sum P(3) = 9.5e-36
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
E A + ++ AL L+ A+ D+LD K ++N Y
Sbjct: 228 ELSLAAKGINSLDYALALSCCGALIDYLDLLNGDKTFEINKY 269
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 363 (132.8 bits), Expect = 9.1e-35, Sum P(2) = 9.1e-35
Identities = 92/274 (33%), Positives = 142/274 (51%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP PV N+ L E S+ L++TGPNM GKST ++ L I
Sbjct: 557 LAIKQGWHPILEKIAMEKPVSNNAYLTEGSN-----FLIITGPNMSGKSTYIKQIALCQI 611
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E C +A+ IFTR+G D I T STF+ E E ++Q A SL+I+
Sbjct: 612 MAQIGSYVPAEYCSFRIAEQIFTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIII 671
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTS +G I YA L+ + LFATH+ L A +P+V H F+
Sbjct: 672 DELGRGTSAEEGIGICYAACEYLLN-LKAFTLFATHFLELCHMDALYPNVENYH----FE 726
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
S G +++ + Y L+ G E +YGL+ A ++ +P ++ A + K I
Sbjct: 727 VQHVRSSAGKEKITYTYTLSKGYTEEKNYGLKAAEVSSLPPSIILDAKAITNHIAKQILH 786
Query: 1030 SFKSSEQRSEFSSLHEEWLKTIVNV--SRVDCNS 1061
+++ + + +++ ++ + SR+D +S
Sbjct: 787 RQRTTPEMMKHRAVYHLAMRLVQTARNSRLDSDS 820
Score = 101 (40.6 bits), Expect = 9.1e-35, Sum P(2) = 9.1e-35
Identities = 76/287 (26%), Positives = 116/287 (40%)
Query: 364 TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALR 421
TN I R V S T T A ++A+ EG G G V G A +D
Sbjct: 39 TNRSIGRSHTPVTGYSVTSSSTASAHTAASVIVAVVEGR-GLARGEV--GMASIDLKNPE 95
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRG-----------LCKEAQKAL------R 464
V + D+ + A + L ++P E+I N L E K + R
Sbjct: 96 VILSQFADNTTYAKVITKLKILTPLEIIMPNTSCEAGNTTKLFALITEHFKNVTFTTVQR 155
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
K+ + LE + ++F S V +Q Y +++ K +E + Q+ I A
Sbjct: 156 KYFNETKGLEYIEQLCASEF---STVFMEIQSKYYCLAAAAALLKYVEFI-QNSI--YAP 209
Query: 525 GGLISHLS----RLMLDDV-LRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLR 577
L H M+D +N +++ RD +G TL+ L+ T G R LR
Sbjct: 210 KSLKVHFQGSEKTAMIDSSSAQNLELVTNN--RDS--RNGHTLFGVLNYTRTPGGSRRLR 265
Query: 578 SWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
S I PL D E I RLD V+ +++ E+ + + K D E+LL
Sbjct: 266 SNILEPLVDAETIKTRLDCVQEFLQDEELFFGLQAVISKFLDTEQLL 312
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 366 (133.9 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 97/295 (32%), Positives = 153/295 (51%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + PV N+ + E S+ ++TGPNM GKST L+ L I
Sbjct: 563 LAIKQGWHPILERISVEKPVANNTYITEGSN-----FFIITGPNMSGKSTYLKQIALCQI 617
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E +A+ IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 618 MAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEVAYILHNANDKSLILI 677
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+T +G I YAV L+ + LFATH+ L + +P+V H
Sbjct: 678 DELGRGTNTEEGIGICYAVCEHLLS-LKAFTLFATHFLELCQIDVLYPNVENMHFEV--- 733
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +N S+ + +++ Y+L+ G E +YGL+ A ++ +P +V A + + I +
Sbjct: 734 QHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKDITTQITRQILQ 793
Query: 1030 SFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQL 1083
+ +S+ + +++ L T +V +R NS D D+L LK Y++
Sbjct: 794 NQRSAPEMERQRAVYH--LATRLVQTAR---NSQLDP--DSLRTYLSNLKKKYEV 841
Score = 103 (41.3 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
+ TL+ L+ T G R LRS I PL DVE IN RLD V+ L+++ E+ + +
Sbjct: 250 NNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETINMRLDCVQELLQDEELFFGLQSVIA 309
Query: 616 KLPDLERLL 624
+ D E+LL
Sbjct: 310 RFLDTEQLL 318
Score = 38 (18.4 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 152 KNVNFTTIQRKYFNETKG 169
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 352 (129.0 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 87/247 (35%), Positives = 130/247 (52%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + PV N+ + E S+ L++TGPNM GKST L+ L I
Sbjct: 666 LAIKQGWHPILEKISAEKPVANNTYITEGSN-----VLIITGPNMSGKSTYLKQIALCQI 720
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E +A IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 721 MAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILI 780
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+T +G I+YAV L+ I LF TH+ L A + +V H
Sbjct: 781 DELGRGTNTEEGIGISYAVCEHLLS-IKAFTLFTTHFLELCHLDALYLNVENMHFEV--- 836
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +N S+ +++ Y+L+ G E +YGL+ A + +P +V A + + I +
Sbjct: 837 QHVKNTSRNKDAILYTYKLSRGLTEEKNYGLKAAEASSLPSSIVLDARDITTQITRQILQ 896
Query: 1030 SFKSSEQ 1036
+ +SS +
Sbjct: 897 NQRSSPE 903
Score = 110 (43.8 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 66/271 (24%), Positives = 110/271 (40%)
Query: 377 TPSTTVDGTIGPDAVH----LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
TP T + H ++A+ EG G G + G A +D + ++ + D+ +
Sbjct: 159 TPQVGYSATSSAVSAHAPSVIVAVVEGR-GLARGEI--GMASIDLKSPQIMLSQFADNTT 215
Query: 433 CAALGALLMQVSPKEVIYENRG-----------LCKEAQKAL------RKFSAGSAALEL 475
A + L +SP E+I N L E K + RK+ + LE
Sbjct: 216 YAKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTVQRKYFNETKGLEY 275
Query: 476 TPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLM 535
+ + +F S V VQ Y +++ K +E + +L +
Sbjct: 276 IEQLCIAEF---SSVLMEVQSRYYCLAAAAALLKYVEFIQNSVYAPKSLKIYFQGSEQTA 332
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
+ D + L V R + TL+ L+ T+ G R LRS I PL DVE I+ R
Sbjct: 333 MIDS-SSAQNLELLVNNQDYRSN-HTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMR 390
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
LD V+ L+++ E+ + + + D E+LL
Sbjct: 391 LDCVQELLQDEELFFGLQSVISRFLDTEQLL 421
Score = 39 (18.8 bits), Expect = 7.8e-27, Sum P(2) = 7.8e-27
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 255 KNVNFTTVQRKYFNETKG 272
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 351 (128.6 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 97/294 (32%), Positives = 146/294 (49%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + PV N+ + E S+ L++TGPNM GKST L+ L I
Sbjct: 666 LAIKQGWHPILEKISAEKPVANNTYITEGSN-----VLIITGPNMSGKSTFLKQIALCQI 720
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G FVP + +A IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 721 MAQIGSFVPAQYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILI 780
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+T +G I+YAV L+ LF TH+ L + +V H
Sbjct: 781 DELGRGTNTEEGTGISYAVCEHLLST-KAFTLFTTHFLELCHIDTLYLNVENMHFEV--- 836
Query: 971 SNSENYSKGDQELVFLYRLTSGACPES-YGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +N S+ +++ Y+L+ G E YGL+ A + +P +V A + + I +
Sbjct: 837 QHVKNTSRNKDAILYTYKLSRGLTEEKHYGLKAAEASSLPPSIVLDAREITTQITRQISQ 896
Query: 1030 SFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
+ +SS + +++ L T +V V+R NS + D L LK Y+
Sbjct: 897 NRRSSPEMDRQRAVYH--LATRLVQVAR---NSQLEP--DRLRTYLSNLKKKYE 943
Score = 111 (44.1 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 66/271 (24%), Positives = 111/271 (40%)
Query: 377 TPSTTVDGTIGPDAVH----LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
TP + T + H ++A+ EG G G + G A +D + ++ + D+ +
Sbjct: 159 TPQVGLSATSSAVSAHAPSVIVAVVEGR-GLARGEI--GMASIDLKSPQIMLSQFADNTT 215
Query: 433 CAALGALLMQVSPKEVIYENRG-----------LCKEAQKAL------RKFSAGSAALEL 475
A + L +SP E+I N L E K + RK+ + LE
Sbjct: 216 YAKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTVQRKYFNETKGLEY 275
Query: 476 TPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLM 535
+ + +F S V VQ Y +++ K +E + +L +
Sbjct: 276 IEQLCIAEF---SSVLMEVQSRYYCLAAAAALLKYVEFIQNSVYAPKSLKIYFQGSEQTA 332
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
+ D + L V R + TL+ L+ T+ G R LRS I PL DVE I+ R
Sbjct: 333 MIDS-SSAQNLELLVNNQDYRSN-HTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMR 390
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
LD V+ L+++ E+ + + + D E+LL
Sbjct: 391 LDCVQELLQDEELFYGLQSVISRFLDTEQLL 421
Score = 39 (18.8 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 255 KNVNFTTVQRKYFNETKG 272
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 367 (134.2 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 98/294 (33%), Positives = 152/294 (51%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + P+ N+ + E S+ L++TGPNM GKST L+ L I
Sbjct: 644 LAIKQGWHPILEKISAEKPIANNTYVTEGSN-----FLIITGPNMSGKSTYLKQIALCQI 698
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E +A IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 699 MAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILI 758
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+T +G I YAV L+ + LFATH+ L A +P+V H
Sbjct: 759 DELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLELCHIDALYPNVENMHFEV--- 814
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +N S+ + +++ Y+L+ G E +YGL+ A ++ +P +V A + + I +
Sbjct: 815 QHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQ 874
Query: 1030 SFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
+ +S+ + +++ L T +V +R NS D D+L LK Y+
Sbjct: 875 NQRSTPEMERQRAVYH--LATRLVQTAR---NSQLDP--DSLRIYLSNLKKKYK 921
Score = 102 (41.0 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
+ TL+ L+ T G R LRS I PL D+E IN RLD V+ L+++ E+ + +
Sbjct: 331 NNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIS 390
Query: 616 KLPDLERLL 624
+ D E+LL
Sbjct: 391 RFLDTEQLL 399
Score = 38 (18.4 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 233 KNVNFTTIQRKYFNETKG 250
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 355 (130.0 bits), Expect = 5.5e-33, Sum P(3) = 5.5e-33
Identities = 96/294 (32%), Positives = 151/294 (51%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + PV N+ + E S+ +++TGPNM GKST L+ L I
Sbjct: 610 LAIKQGWHPILEKISVEKPVANNTYITEGSN-----FVIITGPNMSGKSTYLKQIALCQI 664
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E +A+ IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 665 MAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILI 724
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+T +G I YAV L+ + LFATH+ L +P+V +
Sbjct: 725 DELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLELCHIDVLYPNVENMYFEV--- 780
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +N S+ + +++ Y+L+ G E +YGL+ A + +P +V A + + I +
Sbjct: 781 QHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQ 840
Query: 1030 SFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
+ +S+ + +++ L T +V +R NS D D+L LK Y+
Sbjct: 841 NQRSTPEMERQRAVYH--LATRLVQTAR---NSQLDP--DSLRTYLSNLKRKYE 887
Score = 102 (41.0 bits), Expect = 5.5e-33, Sum P(3) = 5.5e-33
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
+ TL+ L+ T G R LRS I PL D+E IN RLD V+ L+++ E+ + +
Sbjct: 291 NNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIA 350
Query: 616 KLPDLERLL 624
+ D E+LL
Sbjct: 351 RFLDTEQLL 359
Score = 38 (18.4 bits), Expect = 5.5e-33, Sum P(3) = 5.5e-33
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 193 KNVNFTTIQRKYFNETKG 210
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 355 (130.0 bits), Expect = 6.8e-33, Sum P(3) = 6.8e-33
Identities = 96/294 (32%), Positives = 151/294 (51%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L IK WHP + PV N+ + E S+ +++TGPNM GKST L+ L I
Sbjct: 642 LAIKQGWHPILEKISVEKPVANNTYITEGSN-----FVIITGPNMSGKSTYLKQIALCQI 696
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+G +VP E +A+ IFTR+ D I T STF+ E E A +L A SL+++
Sbjct: 697 MAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILI 756
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+T +G I YAV L+ + LFATH+ L +P+V +
Sbjct: 757 DELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLELCHIDVLYPNVENMYFEV--- 812
Query: 971 SNSENYSKGDQELVFLYRLTSGACPE-SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +N S+ + +++ Y+L+ G E +YGL+ A + +P +V A + + I +
Sbjct: 813 QHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQ 872
Query: 1030 SFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
+ +S+ + +++ L T +V +R NS D D+L LK Y+
Sbjct: 873 NQRSTPEMERQRAVYH--LATRLVQTAR---NSQLDP--DSLRTYLSNLKRKYE 919
Score = 102 (41.0 bits), Expect = 6.8e-33, Sum P(3) = 6.8e-33
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
+ TL+ L+ T G R LRS I PL D+E IN RLD V+ L+++ E+ + +
Sbjct: 329 NNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIA 388
Query: 616 KLPDLERLL 624
+ D E+LL
Sbjct: 389 RFLDTEQLL 397
Score = 38 (18.4 bits), Expect = 6.8e-33, Sum P(3) = 6.8e-33
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KDSNFTTKQRNPVGDSSG 47
K+ NFTT QR ++ G
Sbjct: 231 KNVNFTTIQRKYFNETKG 248
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 292 (107.8 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
Identities = 69/236 (29%), Positives = 123/236 (52%)
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
+S + R ++TGPN GKS L+ L + +A +G +VP + D I+TR+
Sbjct: 536 NSGEATRRIKIITGPNSSGKSIYLKQVGLIIFMALIGSYVPAAEAEIGAIDGIYTRIHTR 595
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-I 937
+ + G STF+++ + A + AT+ SLV++DE G+GT+T DG A+ AV + + +
Sbjct: 596 ESVSVGLSTFMIDLNQVAKAVNNATERSLVLIDEFGKGTNTLDGLALLAAVLKYWINQGT 655
Query: 938 NCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
C +F +T++H L + L+++A E + GD ELVF Y++ G
Sbjct: 656 QCPQVFVSTNFHSLMQLELLPDTPLLEYLAM------ETHQDGD-ELVFFYQIKQGVSTV 708
Query: 997 SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIV 1052
S+ +A +AG+P K++E + ++ G++ K + S+ + E K +V
Sbjct: 709 SHAANIAALAGMPAKIIERGVEVSELIRN--GKAIKRIDHPSKGDQM--EKCKAVV 760
Score = 112 (44.5 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 544 DILPYKVYRDCLRM-DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY- 599
DI P VY+ + +G +LY L+ C G++LLR W+ P +++ +N RLDV+ +
Sbjct: 194 DIHP-SVYKLSSGLKEGFSLYGILNRCRCKWGEKLLRLWLTRPTRNLTELNKRLDVIHFF 252
Query: 600 -LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L +N E V+ + LR + ++ +L R+
Sbjct: 253 LLAQNHETVLTLQDCLRNIKNVPLILKRM 281
Score = 44 (20.5 bits), Expect = 5.0e-28, Sum P(3) = 5.0e-28
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 723 DAETLSILIEL---FIEKASQWSEVIHAISCIDVLRSFAVTASMSS 765
D ETL I+ +L +E++ + VI + +DVL + AV A +S
Sbjct: 457 DQETL-IMHQLQTKILERSQVLNNVIEYTAHLDVLLALAVMARENS 501
Score = 42 (19.8 bits), Expect = 8.4e-21, Sum P(3) = 8.4e-21
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 523 ALGGLISHLSRLMLDDVLRNGDI-LPYKVYRDCLRMDGQTLYLDS-CV 568
ALGGL+ +L R + L I +P +R + + + D+ CV
Sbjct: 140 ALGGLLKYLDRRRVGVELEESSIAVPVLAFRKFVLSETVNIDQDTYCV 187
Score = 40 (19.1 bits), Expect = 1.3e-27, Sum P(3) = 1.3e-27
Identities = 9/53 (16%), Positives = 30/53 (56%)
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
+L+ LLG + ++ +++ + K+L++ +V ++++ +D+L+ +
Sbjct: 443 ELDSLLGDLHCEIRDQETLIMHQLQTKILERS-QVLNNVIE-YTAHLDVLLAL 493
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 292 (107.8 bits), Expect = 8.3e-28, Sum P(4) = 8.3e-28
Identities = 77/238 (32%), Positives = 122/238 (51%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPND + R ++TGPN GKS ++ L V LA +G FVP + ++ L D
Sbjct: 555 VPNDTKIRSSG-----RINIITGPNYSGKSIYIKQVALVVFLAHIGSFVPADSAIVGLTD 609
Query: 870 TIFTRLGATDRIMTGE-STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
IF +G+ + MT E STF+++ + ++L+ AT SL +LDE G+GT T DG +
Sbjct: 610 RIFCAMGS--KSMTSEQSTFMIDLHQVGTMLRHATSRSLCLLDEFGKGTLTEDGIGLLGG 667
Query: 929 VFRQLVERINC--RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE-LVF 985
+ +C ++L +TH LT+ F +H+ C S + D E ++F
Sbjct: 668 TISHFTD-YDCPPKVLLSTH---LTQIFTESYLPQSEHIKCYTMSVLNPDEQTDNEDVIF 723
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS------HAALAMKKSIGESFKSSEQR 1037
LYRL G S+GL A +AGVP +VV+ A H+ +++ + E + +Q+
Sbjct: 724 LYRLVPGQALLSFGLHCAQLAGVPSEVVQRAVTVLGDIHSKRPIRRMVWEKLAAKDQQ 781
Score = 118 (46.6 bits), Expect = 8.3e-28, Sum P(4) = 8.3e-28
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L+ CVT GK LLR+W P+ D++ INNRL+ + + + +V+ + L+ + D+ +
Sbjct: 224 LNKCVTPMGKHLLRTWFLRPIIDIDVINNRLNTISFFLCCEDVMSALRGTLKSVRDIPHM 283
Query: 624 L 624
L
Sbjct: 284 L 284
Score = 42 (19.8 bits), Expect = 8.3e-28, Sum P(4) = 8.3e-28
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 301 ELDAEIGHKELDWKITLSGVGKCRQVGIS 329
E + E+ +E+D ++ ++ V + R+VGI+
Sbjct: 4 EEEEEMSEREVDSQVHMACVMQGRRVGIA 32
Score = 37 (18.1 bits), Expect = 8.3e-28, Sum P(4) = 8.3e-28
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 378 PSTTVDGTIGPDAVHLLAIKEGNCGPDNGSV 408
PST T +A+ LLA++ +C + +V
Sbjct: 66 PSTIYTSTKTDEAL-LLALQRNDCNDEAPAV 95
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 278 (102.9 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 70/211 (33%), Positives = 111/211 (52%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
+PND + ++ R ++TGPN GKS ++ L V L+ +G FVP + + L D
Sbjct: 552 IPNDTEINDNG-----RIHIITGPNYSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTD 606
Query: 870 TIFTRLGATDRIMTGE-STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
IF +G+ + MT E STF+++ + +L++AT SL +LDE G+GT T DG +
Sbjct: 607 RIFCAMGS--KFMTAEQSTFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGG 664
Query: 929 VFRQLVERINC-RLLFATHYHPLTKEFASHPHVTLQ-HMACAFKSNSENYSKGDQELVFL 986
R++ TH L E ++ + + ++E S +E+VFL
Sbjct: 665 TISHFATCAEPPRVVVCTHLTELLNESCLPVSEKIKFYTMSVLRPDTE--SANMEEIVFL 722
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
YRL G SYGL A++AGVP++VV+ A+
Sbjct: 723 YRLIPGQTLLSYGLHCALLAGVPEEVVKRAA 753
Score = 116 (45.9 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
++ C T G+RLLRSW P+ D+E ++ RL+ + + + + E++ + + L+ + D+ L
Sbjct: 220 MNKCATPMGRRLLRSWFMRPILDLEVLDRRLNAISFFISSVELMASLRETLKSVKDISHL 279
Query: 624 L 624
L
Sbjct: 280 L 280
Score = 39 (18.8 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 17/79 (21%), Positives = 40/79 (50%)
Query: 588 EGIN--NRLDVVEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGK 644
+G+N R+ + +M SEV + V+ L + + ER++ ++ S+ I + + +
Sbjct: 117 DGLNIKERICYLSSMMDVGSEVQVRVSGGLLAILESERIVETLEQNESGSASIAIDSVME 176
Query: 645 KVLKQQVKVFGSLVKGLRI 663
L + +K+ + + L+I
Sbjct: 177 VPLNKFLKLDAAAHEALQI 195
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 271 (100.5 bits), Expect = 7.7e-27, Sum P(2) = 7.7e-27
Identities = 98/344 (28%), Positives = 159/344 (46%)
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEK 737
IP L + + F+ +GLD F+ E + Y++ +LDA +L +L +
Sbjct: 340 IPRLPSMAEASDFE-IEGLD-FMFLSEGKLH-----YRSARTKELDA----LLGDLHCDI 388
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP---QSKNPAVRQDNGGPVL--- 791
Q + ++H + C VL AV + A ++L +++ + P L
Sbjct: 389 RDQETLLMHQLQC-QVLARAAVFTRVLDLASRLDVLLALASAARDYGYSRPRYSPQLLGV 447
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
+I+ HP + VPN G D R ++TGPN GKS L+ L +
Sbjct: 448 RIQNGRHPL-MELCARTFVPNSAECGGDRG----RVKVITGPNSSGKSIYLKQVGLITFM 502
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
A +G FVP E + D IFTR+ + + I G STF+++ + A + AT+ SLV++D
Sbjct: 503 ALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATKQSLVLID 562
Query: 912 ELGRGTSTFDGYAIAYAVFRQ-LVERINCRLLF-ATHYHPLTKEFASHPHVTLQHMACAF 969
E G+GT+T DG A+ AV R L C +F AT++ L + +Q++
Sbjct: 563 EFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTM-- 620
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
E GD +LVF Y++ G S+ A AG+P +++
Sbjct: 621 ----ETCEDGD-DLVFFYQVCDGLAKASHASHTAAQAGLPDQLL 659
Score = 119 (46.9 bits), Expect = 7.7e-27, Sum P(2) = 7.7e-27
Identities = 49/190 (25%), Positives = 94/190 (49%)
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD--DVLRNGDILPY-KVYRDCLRM-DGQTLY--LDS 566
N+ +GF +++HL + D VL+ P+ VY+ + +G +L+ L+
Sbjct: 94 NISVPILGFKKF--VLTHLVSIDQDTYSVLQIFKSEPHPSVYKVASGLKEGLSLFGILNR 151
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERLL 624
C G++LLR W P +D+E +N+RLDV+++ + +N ++ ++ + L + ++ +L
Sbjct: 152 CRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLIL 211
Query: 625 GRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSR 683
R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 212 KRMKLSHTKTSDWQVLYKTVYSALGLR-DACRSLPQSIQLFQDIAQEFSDDLHHIASL-- 268
Query: 684 IFKPPIFDGS 693
I K F+GS
Sbjct: 269 IGKVVDFEGS 278
Score = 39 (18.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 316 LENLDSRIPSCSVIYIPLIG 335
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 271 (100.5 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 98/344 (28%), Positives = 159/344 (46%)
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEK 737
IP L + + F+ +GLD F+ E + Y++ +LDA +L +L +
Sbjct: 472 IPRLPSMAEASDFE-IEGLD-FMFLSEGKLH-----YRSARTKELDA----LLGDLHCDI 520
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP---QSKNPAVRQDNGGPVL--- 791
Q + ++H + C VL AV + A ++L +++ + P L
Sbjct: 521 RDQETLLMHQLQC-QVLARAAVFTRVLDLASRLDVLLALASAARDYGYSRPRYSPQLLGV 579
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
+I+ HP + VPN G D R ++TGPN GKS L+ L +
Sbjct: 580 RIQNGRHPL-MELCARTFVPNSAECGGDRG----RVKVITGPNSSGKSIYLKQVGLITFM 634
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
A +G FVP E + D IFTR+ + + I G STF+++ + A + AT+ SLV++D
Sbjct: 635 ALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATKQSLVLID 694
Query: 912 ELGRGTSTFDGYAIAYAVFRQ-LVERINCRLLF-ATHYHPLTKEFASHPHVTLQHMACAF 969
E G+GT+T DG A+ AV R L C +F AT++ L + +Q++
Sbjct: 695 EFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTM-- 752
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
E GD +LVF Y++ G S+ A AG+P +++
Sbjct: 753 ----ETCEDGD-DLVFFYQVCDGLAKASHASHTAAQAGLPDQLL 791
Score = 119 (46.9 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 49/190 (25%), Positives = 94/190 (49%)
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD--DVLRNGDILPY-KVYRDCLRM-DGQTLY--LDS 566
N+ +GF +++HL + D VL+ P+ VY+ + +G +L+ L+
Sbjct: 226 NISVPILGFKKF--VLTHLVSIDQDTYSVLQIFKSEPHPSVYKVASGLKEGLSLFGILNR 283
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERLL 624
C G++LLR W P +D+E +N+RLDV+++ + +N ++ ++ + L + ++ +L
Sbjct: 284 CRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLIL 343
Query: 625 GRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSR 683
R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 344 KRMKLSHTKTSDWQVLYKTVYSALGLR-DACRSLPQSIQLFQDIAQEFSDDLHHIASL-- 400
Query: 684 IFKPPIFDGS 693
I K F+GS
Sbjct: 401 IGKVVDFEGS 410
Score = 39 (18.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 448 LENLDSRIPSCSVIYIPLIG 467
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 298 (110.0 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 78/253 (30%), Positives = 132/253 (52%)
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
GP I HP ++ + ND L D R ++TGPNM GKST L+ T
Sbjct: 549 GPSFSISQGRHPILDWDDSEKTITNDTCLTRDR-----RFGIITGPNMAGKSTYLKQTAQ 603
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
I+AQ+GCF+P L + + IF+R+G D ++ +S F E ++ A+++Q A ++SL
Sbjct: 604 LAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSL 663
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH-VTLQHMA 966
V+LDEL R TST +G AI YA+ +++ ++ ATH+ + A++ + + H
Sbjct: 664 VVLDELARSTSTEEGIAITYAICEKVL-KLQSYTFLATHFLDIAA-LANYSNAIDNYHF- 720
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
EN +K + L YR G YG ++ ++ +P +V+E A A ++ +
Sbjct: 721 --LPQTDENSTKKHKLLRGQYR---GPL---YGFELVELSTIPDEVIEHAQSLATELRAN 772
Query: 1027 IGESFKS--SEQR 1037
+ ++ + SE+R
Sbjct: 773 VEDTERDYDSERR 785
Score = 93 (37.8 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 34/130 (26%), Positives = 65/130 (50%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L+ VT++G RLLRS + P DV I +R + +E L+ ++ + + L + +L+R+
Sbjct: 243 LNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRV 302
Query: 624 LGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSL--VKGLRIAMDLLMLMHKEGHIIPSL 681
+ +Q S+ + K+ Q +K+ +L ++G+R LL + +I+
Sbjct: 303 IAMC---IQTSTSWTVRESEAKI-NQIIKLMHTLKVIQGIRT---LLHSAKMKSNILIEK 355
Query: 682 SRIFKPPIFD 691
+ K P FD
Sbjct: 356 TEFLKDPRFD 365
Score = 40 (19.1 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 350 IEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
+E ++ + +KAR R L++V+ + T +G
Sbjct: 217 LEIVDADDASKARKFQMKQKRTLMSVLNHTVTTNG 251
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 298 (110.0 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 78/253 (30%), Positives = 132/253 (52%)
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
GP I HP ++ + ND L D R ++TGPNM GKST L+ T
Sbjct: 549 GPSFSISQGRHPILDWDDSEKTITNDTCLTRDR-----RFGIITGPNMAGKSTYLKQTAQ 603
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
I+AQ+GCF+P L + + IF+R+G D ++ +S F E ++ A+++Q A ++SL
Sbjct: 604 LAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSDAAAIVQYADKNSL 663
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH-VTLQHMA 966
V+LDEL R TST +G AI YA+ +++ ++ ATH+ + A++ + + H
Sbjct: 664 VVLDELARSTSTEEGIAITYAICEKVL-KLQSYTFLATHFLDIAA-LANYSNAIDNYHF- 720
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
EN +K + L YR G YG ++ ++ +P +V+E A A ++ +
Sbjct: 721 --LPQTDENSTKKHKLLRGQYR---GPL---YGFELVELSTIPDEVIEHAQSLATELRAN 772
Query: 1027 IGESFKS--SEQR 1037
+ ++ + SE+R
Sbjct: 773 VEDTERDYDSERR 785
Score = 93 (37.8 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 34/130 (26%), Positives = 65/130 (50%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L+ VT++G RLLRS + P DV I +R + +E L+ ++ + + L + +L+R+
Sbjct: 243 LNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRV 302
Query: 624 LGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSL--VKGLRIAMDLLMLMHKEGHIIPSL 681
+ +Q S+ + K+ Q +K+ +L ++G+R LL + +I+
Sbjct: 303 IAMC---IQTSTSWTVRESEAKI-NQIIKLMHTLKVIQGIRT---LLHSAKMKSNILIEK 355
Query: 682 SRIFKPPIFD 691
+ K P FD
Sbjct: 356 TEFLKDPRFD 365
Score = 40 (19.1 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 350 IEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
+E ++ + +KAR R L++V+ + T +G
Sbjct: 217 LEIVDADDASKARKFQMKQKRTLMSVLNHTVTTNG 251
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 274 (101.5 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 98/343 (28%), Positives = 162/343 (47%)
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEK 737
IP LS + + F+ +GLD F+ F + D Y++ +LDA +L +L E
Sbjct: 446 IPRLSFMVEASDFE-IEGLD-FM--F---LSEDKLHYRSARTKELDA----LLGDLHCEI 494
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQS--KNPAVRQDNGGPVL---K 792
Q ++H + C + R+ +T + + L+ S ++ + + P + +
Sbjct: 495 RDQEMLLMHQLQCQVLARAPVLTRVLDLASRLDVLLALASAARDYGYSRPHYSPCIQGVR 554
Query: 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
IK HP + VPN G D R ++TGPN GKS L+ L +A
Sbjct: 555 IKNGRHPL-MELCARTFVPNSTDCGGDQG----RVKVITGPNSSGKSIYLKQVGLITFMA 609
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
+G FVP E + + D IFTR+ + + I G STF+++ + A + AT+ SLV++DE
Sbjct: 610 LVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDE 669
Query: 913 LGRGTSTFDGYAIAYAVFRQ-LVERINCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFK 970
G+GT++ DG A+ AV R L +C +F AT++ L + +Q++
Sbjct: 670 FGKGTNSVDGLALLTAVLRHWLALGPSCPHIFVATNFLSLVQLQLLPQGPLVQYLTM--- 726
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
E G+ +LVF Y+L G S+ A AG+P ++
Sbjct: 727 ---ETCEDGN-DLVFFYQLCHGVASASHASYTAAQAGLPDPLI 765
Score = 106 (42.4 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 40/159 (25%), Positives = 79/159 (49%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQY 613
+G +L+ L+ C G++LLR W P +++ +N+RLDV+E+ + +N ++ ++ +
Sbjct: 247 EGLSLFGILNRCRCRWGQKLLRLWFTRPTRELRELNSRLDVIEFFLMPQNLDMAQMMHRL 306
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMH 672
L + ++ +L R+K + + S VL L + SL + +++ D+
Sbjct: 307 LSHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFRDITQEFS 365
Query: 673 KEGHIIPSLSRIFKPPIFDGSDGLDKF--LTQFEAAIDS 709
+ H I SL I K F+ S ++F L + ID+
Sbjct: 366 DDLHHIASL--IGKVVDFEESLAENRFTVLPNIDPEIDA 402
Score = 51 (23.0 bits), Expect = 4.9e-26, Sum P(3) = 4.9e-26
Identities = 36/155 (23%), Positives = 68/155 (43%)
Query: 411 GFAFVDCAALRV-WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ-KALRKFSA 468
G A+ D + + ++ D S L +L +++P+ V+ + EA + L K ++
Sbjct: 59 GIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ--DEAMTQFLGKLAS 116
Query: 469 GSAALELTPAMAVTDFLD-ASEVKKLVQLNG---YFNGSSSPWSKAL--ENVMQHD--IG 520
P + + +D E+ K L+G + + S + K L +++ D +
Sbjct: 117 QEHREPKRPEIILLPSVDFGPEISKQRLLSGNYSFISESMTATEKILFLSSIIPFDCVLT 176
Query: 521 FSALGGLISHLSR----LMLDDVLRNGDILPYKVY 551
ALGGL+ LSR + L+D IL +K +
Sbjct: 177 VRALGGLLKFLSRRRVGVELEDYSVGVPILGFKKF 211
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 275 (101.9 bits), Expect = 8.7e-26, Sum P(2) = 8.7e-26
Identities = 77/258 (29%), Positives = 124/258 (48%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 574 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 629
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 630 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 689
Query: 930 FRQLVER-INCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
R + R C +F AT++ L + +Q++ E G+ +LVF Y
Sbjct: 690 LRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTM------ETCEDGN-DLVFFY 742
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK-----KSIGESFKSSEQRSEFSS 1042
++ G S+ A AG+P K+V + ++ K + + K + Q +
Sbjct: 743 QVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKN-QMENCQT 801
Query: 1043 LHEEWLKTIVNVSRVDCN 1060
L ++++K + +D N
Sbjct: 802 LVDKFMKLDLEDPNLDLN 819
Score = 107 (42.7 bits), Expect = 8.7e-26, Sum P(2) = 8.7e-26
Identities = 52/208 (25%), Positives = 99/208 (47%)
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD--DVLR--NGDILPYKVYRDCLRM-DGQTLY--LD 565
NV +GF +++HL + D VL+ + P VY+ + +G +L+ L+
Sbjct: 203 NVSVPILGFKKF--MLTHLVNIDQDTYSVLQIFKSESHP-SVYKVASGLKEGLSLFGILN 259
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERL 623
C G++LLR W P D+ +++RLDV+++ + +N ++ ++ + L + ++ +
Sbjct: 260 RCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLI 319
Query: 624 LGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 320 LKRMKLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFRDIAQEFSDDLHHIASL- 377
Query: 683 RIFKPPIFDGSDGLDKF--LTQFEAAID 708
I K F+GS ++F L + ID
Sbjct: 378 -IGKVVDFEGSLAENRFTVLPNIDPEID 404
Score = 40 (19.1 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 32/154 (20%), Positives = 66/154 (42%)
Query: 411 GFAFVDCAALRV-WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
G A+ D + + ++ D S L +L +++P+ V+ + + + L K ++
Sbjct: 62 GIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTRFLGKLASQ 120
Query: 470 SAALELTPAMAVTDFLDAS-EVKKLVQLNGYFN---GSSSPWSKAL--ENVMQHD--IGF 521
P + +D E+ K L+G ++ + + K L +++ D +
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
Query: 522 SALGGLISHLSR----LMLDDVLRNGDILPYKVY 551
ALGGL+ L R + L+D + IL +K +
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKF 214
Score = 39 (18.8 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 425 LENLDSRIPSCSVIYIPLIG 444
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 265 (98.3 bits), Expect = 9.1e-26, Sum P(3) = 9.1e-26
Identities = 70/229 (30%), Positives = 114/229 (49%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + + D
Sbjct: 573 VPNSTDCGGDQG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGVID 628
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT+ SLV++DE G+GT++ DG A+ AV
Sbjct: 629 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGLALLAAV 688
Query: 930 FRQ-LVERINCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
R L +C +F AT++ L + +Q++ E G+ +LVF Y
Sbjct: 689 LRHWLALGPSCPHVFVATNFLSLVQLQLLPQGPLVQYLTM------ETCEDGE-DLVFFY 741
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQ 1036
+L G S+ A AG+P ++ + ++ G+ K++ +
Sbjct: 742 QLCQGVASASHASHTAAQAGLPDPLIARGKEVSDLIRS--GKPIKATNE 788
Score = 109 (43.4 bits), Expect = 9.1e-26, Sum P(3) = 9.1e-26
Identities = 51/208 (24%), Positives = 101/208 (48%)
Query: 517 HDIGFSALGG---LISHLSRLMLD--DVLR--NGDILPYKVYRDCLRM-DGQTLY--LDS 566
+D+G LG +++HL + D VL+ + P VY+ + +G +L+ L+
Sbjct: 201 YDVGVPILGFKKFVLTHLVSIDQDTYSVLQIFKSESHP-SVYKVASGLKEGLSLFGILNR 259
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERLL 624
C G++LLR W P +++ +N+RLDV+++ + +N ++ ++ + L + ++ +L
Sbjct: 260 CRCKWGQKLLRLWFTRPTRELRELNSRLDVIQFFLMPQNLDMAQMLHRLLSHIKNVPLIL 319
Query: 625 GRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSR 683
R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 320 KRMKLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFQDIAQEFSDDLHHIASL-- 376
Query: 684 IFKPPIFDGSDGLDKF--LTQFEAAIDS 709
I K F+ S ++F L + ID+
Sbjct: 377 IGKVVDFEESLAENRFTVLPNIDPDIDA 404
Score = 55 (24.4 bits), Expect = 9.1e-26, Sum P(3) = 9.1e-26
Identities = 33/145 (22%), Positives = 64/145 (44%)
Query: 411 GFAFVDCAALRV-WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ-KALRKFSA 468
G A+ D + + ++ D S L +L +++P+ V+ + EA + L K ++
Sbjct: 61 GIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ--DEAMTRFLGKLAS 118
Query: 469 GSAALELTPAMAVTDFLD-ASEVKKLVQLNG---YFNGSSSPWSKAL--ENVMQHD--IG 520
P + + +D E+ K L+G + + S + K L +++ D +
Sbjct: 119 EEHREPKGPEIILLPSVDFGPEISKQRLLSGNYSFISDSMTATEKILFLSSIIPFDCVLT 178
Query: 521 FSALGGLISHLSRLMLDDVLRNGDI 545
ALGGL+ LSR + L + D+
Sbjct: 179 VRALGGLLKFLSRRRIGVELEDYDV 203
Score = 40 (19.1 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 621 ERLLGRVKARVQASSCIVLPLIG 643
++ L + +R+ + S I +PLIG
Sbjct: 421 QKELENLDSRIPSCSVIYIPLIG 443
Score = 38 (18.4 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 452 NRGLCKEAQKALRK-FSAGSAAL-ELTPAMAVTDF 484
NR CK QK LR F+ + L EL + V F
Sbjct: 258 NRCRCKWGQKLLRLWFTRPTRELRELNSRLDVIQF 292
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 280 (103.6 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 108/386 (27%), Positives = 178/386 (46%)
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEK 737
IP L + + F+ +GLD F+ E + Y++ +LDA +L +L +
Sbjct: 446 IPRLPSMVETSDFE-IEGLD-FMFLSEEKLH-----YRSARTKELDA----LLGDLHCDI 494
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP---QSKNPAVRQDNGGPVL--- 791
Q + ++H + C VL AV + A ++L +++ + P L
Sbjct: 495 RDQETLLMHQLQC-QVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPRLLGV 553
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
+I+ HP + VPN G D+ R ++TGPN GKS L+ L +
Sbjct: 554 RIQNGRHPL-MELCARTFVPNSAECGGDAG----RVKVITGPNSSGKSIYLKQVGLITFM 608
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
A +G FVP E + D IFTR+ + + I G STF+++ + A + AT+ SLV++D
Sbjct: 609 ALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATERSLVLVD 668
Query: 912 ELGRGTSTFDGYAIAYAVFRQ-LVERINCRLLF-ATHYHPLTKEFASHPHVTL-QHMACA 968
E G+GT+T DG A+ AV R L C +F AT++ L + P L Q++
Sbjct: 669 EFGKGTNTVDGLALLAAVIRHWLALGPTCPHVFVATNFLSLV-QLQLLPRGPLVQYLTM- 726
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK---- 1024
E GD +LVF Y++ G S+ A AG+P+K++ + ++
Sbjct: 727 -----ETCEDGD-DLVFFYQVCEGVARASHASHTAAQAGLPEKLIARGKQVSDLIRSGKP 780
Query: 1025 -KSIGESFKSSEQRSEFSSLHEEWLK 1049
K + E K +Q +L +++LK
Sbjct: 781 IKPVKELLKE-KQMENCQTLVDKFLK 805
Score = 105 (42.0 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 40/158 (25%), Positives = 78/158 (49%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQY 613
+G +L+ L+ C G++LLR W P +D+ +N+RLDV+++ + +N ++ ++ +
Sbjct: 247 EGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLGELNSRLDVIQFFLLPQNLDMAQMLHRL 306
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMH 672
L + ++ +L R+ + + S VL L + SL + +++ D+
Sbjct: 307 LGHIKNVPLILKRMTLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFRDIAQEFS 365
Query: 673 KEGHIIPSLSRIFKPPIFDGSDGLDKF--LTQFEAAID 708
+ H I SL I K F+GS ++F L + ID
Sbjct: 366 DDLHHIASL--IGKVVDFEGSLAENRFTVLPNIDPEID 401
Score = 42 (19.8 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 33/154 (21%), Positives = 65/154 (42%)
Query: 411 GFAFVDCAALRV-WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
G A+ D + + ++ D S L +L ++ P+ V+ + + + L K ++
Sbjct: 59 GIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEIDPRSVVTSAKQ-DENMTRFLGKLASQ 117
Query: 470 SAALELTPAMAVTDFLDAS-EVKKLVQLNGYFN---GSSSPWSKAL--ENVMQHD--IGF 521
P + +D E+ K L+G ++ S + K L +++ D +
Sbjct: 118 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFLPDSMTTTEKILFLSSIIPFDCLLMV 177
Query: 522 SALGGLISHLSR----LMLDDVLRNGDILPYKVY 551
ALGGL+ L R + L+D + IL +K +
Sbjct: 178 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKF 211
Score = 39 (18.8 bits), Expect = 7.3e-19, Sum P(3) = 7.3e-19
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 422 LENLDSRIPSCSVIYIPLIG 441
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 295 (108.9 bits), Expect = 8.2e-25, P = 8.2e-25
Identities = 57/86 (66%), Positives = 69/86 (80%)
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
+GPNMGGKSTLLR TCLA ILAQ+G +VP E LS D++F R+GA D IMTG+STF +
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFI 60
Query: 891 ECTETASVLQKATQDSLVILDELGRG 916
E ETA++L +AT DSLV+LDELGRG
Sbjct: 61 ELAETAAMLARATPDSLVVLDELGRG 86
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 273 (101.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 108/414 (26%), Positives = 191/414 (46%)
Query: 620 LERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLV---KGLRIAMDLLMLMHKEGH 676
LE +L V Q +P K K K+ ++ G + + +LM +G
Sbjct: 442 LEGILLDVARETQIFLLNTMPQEDCKTTKSLEKLVNAVYIPQLGYLVTISVLMEPLLDG- 500
Query: 677 IIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIE 736
IP+L IF S+ + F +D + D ++D + E L L E +
Sbjct: 501 -IPNLQW---EEIFRSSENI-YFKNGRVLELDETYGDIYGA-ISDFEIEILFSLQEQILR 554
Query: 737 KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
+ +Q + +S +++L SFA ++ + A P ++ + NG L L
Sbjct: 555 RKTQLTAYNILLSELEILLSFAQVSAERNYA--EPQLVEDEC--ILEIINGRHALYETFL 610
Query: 797 --WHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQL 854
+ P + +GGL +++ E + R +++TG N GKS L L V LAQ+
Sbjct: 611 DNYIPNSTMIDGGLF--SELSWCEQNKG---RIIVVTGANASGKSVYLTQNGLIVYLAQI 665
Query: 855 GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELG 914
GCFVP E + +AD I TR+ + + +S+FL++ + A L AT+ SL+++DE G
Sbjct: 666 GCFVPAERARIGIADKILTRIRTQETVYKTQSSFLLDSQQMAKSLSLATEKSLILIDEYG 725
Query: 915 RGTSTFDGYAIAYAVFRQLVERINC-RLLFATHYHPLTKEFASHPHVT-LQHMACAFKSN 972
+GT DG ++ ++ + + C R++ TH+H L E ++ ++H C
Sbjct: 726 KGTDILDGPSLFGSIMLNMSKSEKCPRIIACTHFHELFNENVLTENIKGIKHY-CTDILI 784
Query: 973 SENYSK------G-DQE---LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
S+ Y+ G D E + FL+++ G +S+G+ A + G+ + +VE A
Sbjct: 785 SQKYNLLETAHVGEDHESEGITFLFKVKEGISKQSFGIYCAKVCGLSRDIVERA 838
Score = 89 (36.4 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 38/185 (20%), Positives = 90/185 (48%)
Query: 498 GYFNGSSSPWSKALENVMQHDIGFSALGGL--ISHLSRLMLDD-VLRNGDILP--YKVYR 552
G +N S++ + ++Q+ + G+ I R++LD+ + I P +K+
Sbjct: 210 GEYNDSTASSNMVTGRLVQNAFE-DVIHGIRYIDIRDRMVLDENTISALHIFPTAHKLGH 268
Query: 553 DCLRMDG--QTLYLDSCVTSS-GKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVV 607
D + +G L + V+S +R+L+SW+ +PL + + I R ++ L+ +N+ +
Sbjct: 269 DKMMRNGFFSVFELFNQVSSDYARRILKSWLINPLTNKKRIETRYSIIRTLLDKQNAIIF 328
Query: 608 MVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL 667
++Q +++ PD + ++++ S+ + L++ + +F LV L++ D
Sbjct: 329 SDLSQSIKRCPDAFGFINQLRSG--KSTLGTWSKVAS-FLEKGIAIF-QLVSSLKLGSDE 384
Query: 668 LMLMH 672
++H
Sbjct: 385 ANILH 389
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 275 (101.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 81/273 (29%), Positives = 136/273 (49%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
PV++ L+HP ++ VPN + G D + ++TGPN GKS +++ +
Sbjct: 600 PVIEAVELYHPISVLVVKKSFVPNQVSSGRDGI----KASIITGPNACGKSVYMKSIGIM 655
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V L+ +G FVP + + D I TR+ D ++ G STF + + A L+KAT +SLV
Sbjct: 656 VFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLV 715
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLF-ATHYHPLTKEFASHPHVTLQHM 965
I+DE G+GT T G ++ +V + R C +F ++H+H L ++ L+
Sbjct: 716 IIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPN------YIPLETN 769
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
F + + G + + +L+R+T G S+ L VA G+P V+ A A+K
Sbjct: 770 IATFLTFTVLREAGGK-IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKA 828
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVD 1058
G K E ++E S+ +E+ L ++V D
Sbjct: 829 --GTLLK--EIKAEVSNDNEKQLVEDMDVVLAD 857
Score = 90 (36.7 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 544 DILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
DILP + G++LY +D C ++ GK+ LR W +P D + + +R V Y
Sbjct: 289 DILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYFK 348
Query: 602 K--NSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ N+EV ++ L ++ L + + ++
Sbjct: 349 QDWNAEVTAKLSSILGRVKALNSVFQKFQS 378
Score = 38 (18.4 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYD 256
E + D T + + ++R+A R DD D
Sbjct: 508 ESQPDMTLLYSTHEDLRVRNATTSRLDDEFGD 539
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 275 (101.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 81/273 (29%), Positives = 136/273 (49%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
PV++ L+HP ++ VPN + G D + ++TGPN GKS +++ +
Sbjct: 600 PVIEAVELYHPISVLVVKKSFVPNQVSSGRDGI----KASIITGPNACGKSVYMKSIGIM 655
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V L+ +G FVP + + D I TR+ D ++ G STF + + A L+KAT +SLV
Sbjct: 656 VFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLV 715
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLF-ATHYHPLTKEFASHPHVTLQHM 965
I+DE G+GT T G ++ +V + R C +F ++H+H L ++ L+
Sbjct: 716 IIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPN------YIPLETN 769
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
F + + G + + +L+R+T G S+ L VA G+P V+ A A+K
Sbjct: 770 IATFLTFTVLREAGGK-IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKA 828
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVD 1058
G K E ++E S+ +E+ L ++V D
Sbjct: 829 --GTLLK--EIKAEVSNDNEKQLVEDMDVVLAD 857
Score = 90 (36.7 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 544 DILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
DILP + G++LY +D C ++ GK+ LR W +P D + + +R V Y
Sbjct: 289 DILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYFK 348
Query: 602 K--NSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ N+EV ++ L ++ L + + ++
Sbjct: 349 QDWNAEVTAKLSSILGRVKALNSVFQKFQS 378
Score = 38 (18.4 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYD 256
E + D T + + ++R+A R DD D
Sbjct: 508 ESQPDMTLLYSTHEDLRVRNATTSRLDDEFGD 539
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 220 (82.5 bits), Expect = 7.6e-23, Sum P(5) = 7.6e-23
Identities = 45/141 (31%), Positives = 80/141 (56%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
+PND +D P ++++GPN GKS ++ L V L Q+G +VP + +SL D
Sbjct: 579 IPNDT----QNDPTKP-VVIVSGPNQSGKSIYIKQVALIVFLGQIGSYVPAKSATISLFD 633
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
I+TR+ + + ES+F+++C + A + + AT SL+I+DE G+GT+ DG ++ Y +
Sbjct: 634 HIYTRISSRESNAISESSFMIDCKQIAQMTRFATSRSLLIIDEYGKGTNPLDGISLLYGL 693
Query: 930 FRQLVERINC--RLLFATHYH 948
L+ + + TH++
Sbjct: 694 LVFLLTKSPSTPKTFICTHFY 714
Score = 86 (35.3 bits), Expect = 7.6e-23, Sum P(5) = 7.6e-23
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL--MKNSEVVMVVAQY 613
+G +L+ D T+ GK+LL++W P ++ I R +++++ +NS + +
Sbjct: 254 EGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNRFVIEERQNLIQFFSSQENSSLKFELLDN 313
Query: 614 LRKLPDLERLLGRVKA 629
L+ + DL+ +L R+ +
Sbjct: 314 LKNIKDLKIILSRISS 329
Score = 74 (31.1 bits), Expect = 7.6e-23, Sum P(5) = 7.6e-23
Identities = 42/170 (24%), Positives = 74/170 (43%)
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G A+ D +++ +D + + L ++ ++PK +I +R K LR +
Sbjct: 65 GVAYYDRLESNIYLCQCWEDENFSCLNSIKQLINPKVIIIPSRMPQKFIDNILRNLDDSN 124
Query: 471 AALELTPAMAV-------TDFLDASEVKKLVQLNGYFNGSSSPWSKA--LENVMQHD-IG 520
E + +DF S +L+ L +++ K L+NV D I
Sbjct: 125 ENNEKQTSKNTQYHYSRFSDFTFESSKNRLLNLKLSMCNTNNTTIKYTFLQNVFNFDNIE 184
Query: 521 F-SALGGLISHLSR-LMLDDV--LRN---GDILPYKVYRDCLRMDGQTLY 563
A+GGL+S+LS+ ++LDD L N +I P + L +D TL+
Sbjct: 185 MIRAVGGLLSYLSKYILLDDFDSLDNLIINEICPITL-NQYLLLDNNTLF 233
Score = 61 (26.5 bits), Expect = 7.6e-23, Sum P(5) = 7.6e-23
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 975 NYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
N + E + Y+L G S+G+ A +AGV + VV A
Sbjct: 780 NTNNKPNEFIPFYKLKEGISSSSFGILCAKIAGVNENVVNRA 821
Score = 48 (22.0 bits), Expect = 7.6e-23, Sum P(5) = 7.6e-23
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEK 737
IPSLS IFK S L F Q +D F D N D+ D+ + +++ +
Sbjct: 468 IPSLSFIFKT-----SSYL-YFQNQKTKELDDFFGDIHN-DILDIQSRIEKEVVDEIMSN 520
Query: 738 ASQWSEVIHAISCIDVLRSFA 758
+ ++ + + +D + S A
Sbjct: 521 SGSIIDLCNYCTQLDCILSLA 541
Score = 46 (21.3 bits), Expect = 4.5e-18, Sum P(4) = 4.5e-18
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 580 ICHPLKDVEGINNRLDV--VEYLMKNSEVVMVVAQYLRKLPD 619
IC P+++ I N++++ + ++ K S + Q ++L D
Sbjct: 452 ICIPIEESIAIGNQINIPSLSFIFKTSSYLYFQNQKTKELDD 493
Score = 45 (20.9 bits), Expect = 5.7e-18, Sum P(4) = 5.7e-18
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 586 DVEGINNRLD--VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIG 643
D+ I +R++ VV+ +M NS ++ + Y +L + +L VQA +V P+I
Sbjct: 501 DILDIQSRIEKEVVDEIMSNSGSIIDLCNYCTQL---DCILSLASC-VQAYD-LVKPIIS 555
Query: 644 KKVLKQQVKV 653
+ +Q++++
Sbjct: 556 TE--QQEIEI 563
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 289 (106.8 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 103/358 (28%), Positives = 172/358 (48%)
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSD--------F--PDYQ-----NHDVTD-LDAETLS 728
F P I+ G+ G D+ + Q + A+DS F P + H+ ++ A L
Sbjct: 614 FTPSIWAGTAGEDQ-IKQLKPALDSKGKKVGEEWFTTPKVEIALVRYHEASENAKARVLE 672
Query: 729 ILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHR---PLILPQSKNPAVRQD 785
+L EL ++ ++ + ++ A S + V+ S A+ + G + P ++ S + +
Sbjct: 673 LLRELSVKLQTKINVLVFA-SMLLVI-SKALFSHACEGRRRKWVFPTLVGFSLDEGAKPL 730
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
+G +K+ GL P+ + G V N + D + LLTGPN GGKS+LLR+
Sbjct: 731 DGASRMKLTGL-SPYWFDVSSGTAVHNTV-------D-MQSLFLLTGPNGGGKSSLLRSI 781
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
C A +L G VP E + D+I + + D + G+S+F VE +E S++ +AT
Sbjct: 782 CAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSR 841
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SLV++DE+ RGT T G IA +V L + C + +TH H + + ++T + M
Sbjct: 842 SLVLIDEICRGTETAKGTCIAGSVVESL-DTSGCLGIVSTHLHGIFSLPLTAKNITYKAM 900
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
N E +K ++LT G C ES + A GVP+ V++ A L++
Sbjct: 901 GA---ENVEGQTKPT------WKLTDGVCRESLAFETAKREGVPESVIQRAEALYLSV 949
Score = 64 (27.6 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 281 KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESG-----IDD 335
KS++ +L +VG+FYE +DA I L L+ G R I ++G +
Sbjct: 132 KSRFPREVLLCRVGEFYEAIGIDACI----LVEYAGLNPFGGLRSDSIPKAGCPIMNLRQ 187
Query: 336 AVEKLVARGYKVGRIEQLETSEQAKAR 362
++ L GY V +E+++ A++R
Sbjct: 188 TLDDLTRNGYSVCIVEEVQGPTPARSR 214
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 236 (88.1 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 55/145 (37%), Positives = 79/145 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 574 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 629
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 630 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 689
Query: 930 FRQLVER-INCRLLF-ATHYHPLTK 952
R + R C +F AT++ L +
Sbjct: 690 LRHWLARGPTCPHIFVATNFLSLVQ 714
Score = 107 (42.7 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 52/208 (25%), Positives = 99/208 (47%)
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD--DVLR--NGDILPYKVYRDCLRM-DGQTLY--LD 565
NV +GF +++HL + D VL+ + P VY+ + +G +L+ L+
Sbjct: 203 NVSVPILGFKKF--MLTHLVNIDQDTYSVLQIFKSESHP-SVYKVASGLKEGLSLFGILN 259
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERL 623
C G++LLR W P D+ +++RLDV+++ + +N ++ ++ + L + ++ +
Sbjct: 260 RCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLI 319
Query: 624 LGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 320 LKRMKLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFRDIAQEFSDDLHHIASL- 377
Query: 683 RIFKPPIFDGSDGLDKF--LTQFEAAID 708
I K F+GS ++F L + ID
Sbjct: 378 -IGKVVDFEGSLAENRFTVLPNIDPEID 404
Score = 40 (19.1 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 32/154 (20%), Positives = 66/154 (42%)
Query: 411 GFAFVDCAALRV-WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
G A+ D + + ++ D S L +L +++P+ V+ + + + L K ++
Sbjct: 62 GIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTRFLGKLASQ 120
Query: 470 SAALELTPAMAVTDFLDAS-EVKKLVQLNGYFN---GSSSPWSKAL--ENVMQHD--IGF 521
P + +D E+ K L+G ++ + + K L +++ D +
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
Query: 522 SALGGLISHLSR----LMLDDVLRNGDILPYKVY 551
ALGGL+ L R + L+D + IL +K +
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKF 214
Score = 39 (18.8 bits), Expect = 3.5e-14, Sum P(3) = 3.5e-14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 425 LENLDSRIPSCSVIYIPLIG 444
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 263 (97.6 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 70/218 (32%), Positives = 118/218 (54%)
Query: 798 HPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
HP G N V N+ + L R ++TG NM GKS LR VI+AQ+GCF
Sbjct: 528 HPILGGNNSNF-VANNYSCNHE----LSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCF 582
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP E + + +++++R+ ++D + S+F E +ETA +L + DSL+++DELGRG+
Sbjct: 583 VPAEYARMRIFNSLYSRI-SSDNVDINASSFSKEMSETAVILNDSDGDSLILIDELGRGS 641
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
S DG++I A+ L+ + ++ TH+ + + A+ V HM ++N +
Sbjct: 642 SLTDGFSICLAILEDLICK-EATVITTTHFRDIAQVLANKSCVVTAHMQTV-ETNGQLEM 699
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGV-PQKVVE 1014
K LV L R +G YG++ A ++ + PQ+++E
Sbjct: 700 K--YNLV-LGR--NGIV--GYGIRFAEVSNLLPQELIE 730
Score = 88 (36.0 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 553 DCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
D L G TLY L+ C+T G R+LR+ I P I R + V+ L+ + + ++ +
Sbjct: 206 DSLSETGTTLYSFLNCCLTKMGMRILRTSILQPSTHENSIILRSESVQELINDEDALISI 265
Query: 611 AQYLRKLPDLERL 623
L+ DLE++
Sbjct: 266 RSSLKHTCDLEKV 278
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 744 VIHAISCIDVLRSFAVTASMSSGAMHRP 771
V AI +D+L SFA S+ + P
Sbjct: 488 VSEAIGTLDLLCSFAYFTSLQKDSYTCP 515
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 236 (88.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 55/145 (37%), Positives = 79/145 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 591 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 646
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 647 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 706
Query: 930 FRQLVER-INCRLLF-ATHYHPLTK 952
R + R C +F AT++ L +
Sbjct: 707 LRHWLARGPTCPHIFVATNFLSLVQ 731
Score = 107 (42.7 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 52/208 (25%), Positives = 99/208 (47%)
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD--DVLR--NGDILPYKVYRDCLRM-DGQTLY--LD 565
NV +GF +++HL + D VL+ + P VY+ + +G +L+ L+
Sbjct: 220 NVSVPILGFKKF--MLTHLVNIDQDTYSVLQIFKSESHP-SVYKVASGLKEGLSLFGILN 276
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERL 623
C G++LLR W P D+ +++RLDV+++ + +N ++ ++ + L + ++ +
Sbjct: 277 RCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLI 336
Query: 624 LGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 337 LKRMKLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFRDIAQEFSDDLHHIASL- 394
Query: 683 RIFKPPIFDGSDGLDKF--LTQFEAAID 708
I K F+GS ++F L + ID
Sbjct: 395 -IGKVVDFEGSLAENRFTVLPNIDPEID 421
Score = 39 (18.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 442 LENLDSRIPSCSVIYIPLIG 461
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 227 (85.0 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 574 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 629
Query: 870 TIFTRLGATDRIMTGESTFLVECTE-TASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ A
Sbjct: 630 AIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAA 689
Query: 929 VFRQLVER-INCRLLF-ATHYHPLTK 952
V R + R C +F AT++ L +
Sbjct: 690 VLRHWLARGPTCPHIFVATNFLSLVQ 715
Score = 107 (42.7 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 52/208 (25%), Positives = 99/208 (47%)
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD--DVLR--NGDILPYKVYRDCLRM-DGQTLY--LD 565
NV +GF +++HL + D VL+ + P VY+ + +G +L+ L+
Sbjct: 203 NVSVPILGFKKF--MLTHLVNIDQDTYSVLQIFKSESHP-SVYKVASGLKEGLSLFGILN 259
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERL 623
C G++LLR W P D+ +++RLDV+++ + +N ++ ++ + L + ++ +
Sbjct: 260 RCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLI 319
Query: 624 LGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 320 LKRMKLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFRDIAQEFSDDLHHIASL- 377
Query: 683 RIFKPPIFDGSDGLDKF--LTQFEAAID 708
I K F+GS ++F L + ID
Sbjct: 378 -IGKVVDFEGSLAENRFTVLPNIDPEID 404
Score = 40 (19.1 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 32/154 (20%), Positives = 66/154 (42%)
Query: 411 GFAFVDCAALRV-WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
G A+ D + + ++ D S L +L +++P+ V+ + + + L K ++
Sbjct: 62 GIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQ-DENMTRFLGKLASQ 120
Query: 470 SAALELTPAMAVTDFLDAS-EVKKLVQLNGYFN---GSSSPWSKAL--ENVMQHD--IGF 521
P + +D E+ K L+G ++ + + K L +++ D +
Sbjct: 121 EHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFLSSIIPFDCLLTV 180
Query: 522 SALGGLISHLSR----LMLDDVLRNGDILPYKVY 551
ALGGL+ L R + L+D + IL +K +
Sbjct: 181 RALGGLLKFLGRRRIGVELEDYNVSVPILGFKKF 214
Score = 39 (18.8 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 425 LENLDSRIPSCSVIYIPLIG 444
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 227 (85.0 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 591 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 646
Query: 870 TIFTRLGATDRIMTGESTFLVECTE-TASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ A
Sbjct: 647 AIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAA 706
Query: 929 VFRQLVER-INCRLLF-ATHYHPLTK 952
V R + R C +F AT++ L +
Sbjct: 707 VLRHWLARGPTCPHIFVATNFLSLVQ 732
Score = 107 (42.7 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 52/208 (25%), Positives = 99/208 (47%)
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD--DVLR--NGDILPYKVYRDCLRM-DGQTLY--LD 565
NV +GF +++HL + D VL+ + P VY+ + +G +L+ L+
Sbjct: 220 NVSVPILGFKKF--MLTHLVNIDQDTYSVLQIFKSESHP-SVYKVASGLKEGLSLFGILN 276
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM--KNSEVVMVVAQYLRKLPDLERL 623
C G++LLR W P D+ +++RLDV+++ + +N ++ ++ + L + ++ +
Sbjct: 277 RCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLI 336
Query: 624 LGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R+K + + S VL L + SL + +++ D+ + H I SL
Sbjct: 337 LKRMKLSHTKVSDWQVLYKTVYSALGLR-DACRSLPQSIQLFRDIAQEFSDDLHHIASL- 394
Query: 683 RIFKPPIFDGSDGLDKF--LTQFEAAID 708
I K F+GS ++F L + ID
Sbjct: 395 -IGKVVDFEGSLAENRFTVLPNIDPEID 421
Score = 39 (18.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 442 LENLDSRIPSCSVIYIPLIG 461
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 275 (101.9 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 77/258 (29%), Positives = 124/258 (48%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 236 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 291
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 292 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 351
Query: 930 FRQLVER-INCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
R + R C +F AT++ L + +Q++ E G+ +LVF Y
Sbjct: 352 LRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTM------ETCEDGN-DLVFFY 404
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK-----KSIGESFKSSEQRSEFSS 1042
++ G S+ A AG+P K+V + ++ K + + K + Q +
Sbjct: 405 QVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKN-QMENCQT 463
Query: 1043 LHEEWLKTIVNVSRVDCN 1060
L ++++K + +D N
Sbjct: 464 LVDKFMKLDLEDPNLDLN 481
Score = 39 (18.8 bits), Expect = 8.1e-20, Sum P(2) = 8.1e-20
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 87 LENLDSRIPSCSVIYIPLIG 106
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 275 (101.9 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 77/258 (29%), Positives = 124/258 (48%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 248 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 303
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 304 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 363
Query: 930 FRQLVER-INCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
R + R C +F AT++ L + +Q++ E G+ +LVF Y
Sbjct: 364 LRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTM------ETCEDGN-DLVFFY 416
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK-----KSIGESFKSSEQRSEFSS 1042
++ G S+ A AG+P K+V + ++ K + + K + Q +
Sbjct: 417 QVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKN-QMENCQT 475
Query: 1043 LHEEWLKTIVNVSRVDCN 1060
L ++++K + +D N
Sbjct: 476 LVDKFMKLDLEDPNLDLN 493
Score = 39 (18.8 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 99 LENLDSRIPSCSVIYIPLIG 118
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 275 (101.9 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 77/258 (29%), Positives = 124/258 (48%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 273 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 328
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 329 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 388
Query: 930 FRQLVER-INCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
R + R C +F AT++ L + +Q++ E G+ +LVF Y
Sbjct: 389 LRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTM------ETCEDGN-DLVFFY 441
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK-----KSIGESFKSSEQRSEFSS 1042
++ G S+ A AG+P K+V + ++ K + + K + Q +
Sbjct: 442 QVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKN-QMENCQT 500
Query: 1043 LHEEWLKTIVNVSRVDCN 1060
L ++++K + +D N
Sbjct: 501 LVDKFMKLDLEDPNLDLN 518
Score = 39 (18.8 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 124 LENLDSRIPSCSVIYIPLIG 143
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 262 (97.3 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 85/309 (27%), Positives = 137/309 (44%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHA-ISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
DL E IE+ +E A SE A I ++VL +++ A P+ +
Sbjct: 122 DLTEEIADEEIEVIVELAGAVSEHEDALIRALEVLGELDSLLALAFAAEKYNWAAPKMTS 181
Query: 780 PAVRQDNGG--PVLKIKGLWHPFALGE---NGGLPVPN--DI-LLGEDSDDCLPRTLLLT 831
+ GG P+ ++ L F + GG N +I +G + P L+LT
Sbjct: 182 ENIIDIEGGRHPLQEL--LVPSFIPNDCILRGGCASENGNEIDFVGVKDEPKEPSALVLT 239
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPN GKS ++ L + LA +G +VP + + D IFTR+ + M ES F+ +
Sbjct: 240 GPNNSGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVATRETAMDDESAFMTD 299
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHP 949
+ A + AT+ SL++ DE G+GT+ G A+ A +E R+L +TH+H
Sbjct: 300 LKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELDADRPRMLVSTHFHD 359
Query: 950 LTKEFASHPH--VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAG 1007
+ P V HM +E + ++ + +LYRL G S GL A +
Sbjct: 360 VFNRGFLKPEEGVAYAHMEVRLNPEAE---EREEHITYLYRLVHGRAEHSLGLMCAAINH 416
Query: 1008 VPQKVVEAA 1016
+ V++ A
Sbjct: 417 IEDDVLKRA 425
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 259 (96.2 bits), Expect = 4.8e-19, Sum P(3) = 4.8e-19
Identities = 80/271 (29%), Positives = 129/271 (47%)
Query: 771 PLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLL 830
P I P K+ + + +++ G + P+ L N G + ND+ + +L
Sbjct: 715 PTISPLCKDNVTEEISSE--MELSGTF-PYWLDTNQGNAILNDVHMHS--------LFIL 763
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPN GGKS++LR+ C A +L G VP V+ D+I + A D G+S+F +
Sbjct: 764 TGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPHFDSIMLHMKAYDSPADGKSSFQI 823
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E +E S++ +AT SLV++DE+ RGT T G IA ++ +L + + C + +TH H +
Sbjct: 824 EMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERL-DNVGCIGIISTHLHGI 882
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
+ H T FK+ D+ + ++L G C ES Q A G+P
Sbjct: 883 F-DLPLSLHNT------DFKAMGTEII--DRCIQPTWKLMDGICRESLAFQTARKEGMPD 933
Query: 1011 KVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
++ A LAM + ++ SS E S
Sbjct: 934 LIIRRAEELYLAMSTNSKQT--SSAVHHEIS 962
Score = 68 (29.0 bits), Expect = 4.8e-19, Sum P(3) = 4.8e-19
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 281 KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESG-----IDD 335
KS++ +L +VG FYE DA I L L+ G R I ++G +
Sbjct: 132 KSKFPREVLLCRVGDFYEAVGFDACI----LVEHAGLNPFGGLRSDSIPKAGCPVMNLRQ 187
Query: 336 AVEKLVARGYKVGRIEQLETSEQAKAR 362
++ L GY V +E+++ QA+AR
Sbjct: 188 TLDDLTRCGYSVCIVEEIQGPTQARAR 214
Score = 43 (20.2 bits), Expect = 4.8e-19, Sum P(3) = 4.8e-19
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 678 IPSLSRIFKPPIFDGSDGL 696
IPSL +I PP F G L
Sbjct: 384 IPSLLKIVLPPNFGGLPSL 402
Score = 38 (18.4 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL-G-RVKARVQASSC 636
I N LD V ++ N+E+ + L KL D ++ G +V+A + + C
Sbjct: 462 IKNVLDEVLFMGSNAELSAI----LNKLLDPAAIVTGFKVEADILVNEC 506
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 266 (98.7 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 77/259 (29%), Positives = 124/259 (47%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 236 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 291
Query: 870 TIFTRLGATDRIMTGESTFLVECTE-TASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ A
Sbjct: 292 AIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAA 351
Query: 929 VFRQLVER-INCRLLF-ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
V R + R C +F AT++ L + +Q++ E G+ +LVF
Sbjct: 352 VLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTM------ETCEDGN-DLVFF 404
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK-----KSIGESFKSSEQRSEFS 1041
Y++ G S+ A AG+P K+V + ++ K + + K + Q
Sbjct: 405 YQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKN-QMENCQ 463
Query: 1042 SLHEEWLKTIVNVSRVDCN 1060
+L ++++K + +D N
Sbjct: 464 TLVDKFMKLDLEDPNLDLN 482
Score = 39 (18.8 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 87 LENLDSRIPSCSVIYIPLIG 106
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 236 (88.1 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 55/145 (37%), Positives = 79/145 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 106 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 161
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 162 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 221
Query: 930 FRQLVER-INCRLLF-ATHYHPLTK 952
R + R C +F AT++ L +
Sbjct: 222 LRHWLARGPTCPHIFVATNFLSLVQ 246
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 236 (88.1 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 55/145 (37%), Positives = 79/145 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 99 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 154
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 155 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 214
Query: 930 FRQLVER-INCRLLF-ATHYHPLTK 952
R + R C +F AT++ L +
Sbjct: 215 LRHWLARGPTCPHIFVATNFLSLVQ 239
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 236 (88.1 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 55/145 (37%), Positives = 79/145 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 98 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 153
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 154 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 213
Query: 930 FRQLVER-INCRLLF-ATHYHPLTK 952
R + R C +F AT++ L +
Sbjct: 214 LRHWLARGPTCPHIFVATNFLSLVQ 238
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 246 (91.7 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 75/227 (33%), Positives = 112/227 (49%)
Query: 795 GLWHPFALGENGGL-----PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
GL P A GE L P+ D + + D R LL++GPNMGGK+ LL+ LAV
Sbjct: 274 GLSRP-AFGERYELYRAFHPLIPDAVRNSFALDEKNRILLISGPNMGGKTALLKTLGLAV 332
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ G FV E +L+ D ++ +G + STF +L++AT SLV+
Sbjct: 333 LMAQSGLFVAAEKALLAWPDRVYADIGDEQSLQENLSTFAGHLRRLREMLEEATSHSLVL 392
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELG GT +G A++ A+ L+ER + + TH PL K FA +Q+ + F
Sbjct: 393 IDELGSGTDPEEGAALSQAILEALLER-GVKGMVTTHLSPL-KAFAQGRE-GIQNASMRF 449
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ L Y L G SY L +A +P++V++ A
Sbjct: 450 DLEA---------LRPTYELVLGVPGRSYALAIARRLALPEEVLKRA 487
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 198 (74.8 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 64/211 (30%), Positives = 101/211 (47%)
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA---TDRIMTGE 885
++TG NM GKS L+ L I+AQ+G +P L + +F RL A D +
Sbjct: 631 IITGCNMSGKSVYLKQVALICIMAQMGSGIPA----LYGSFPVFKRLHARVCNDSMELTS 686
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
S F E E A L ++L+ILDELGRG+S DG+ ++ AV L+ R + +T
Sbjct: 687 SNFGFEMKEMAYFLDDINTETLLILDELGRGSSIADGFCVSLAVTEHLL-RTEATVFLST 745
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACP-ESYGLQVAV 1004
H+ + K + P V+ HM + D + Y+LT + E+ G++V
Sbjct: 746 HFQDIPKIMSKKPAVSHLHMDAVLLN--------DNSVKMNYQLTQKSVAIENSGIRVVK 797
Query: 1005 MAGVPQKVVEAAS-HAALAMKKSIGESFKSS 1034
P + EA + H+ L + K+ E+ S+
Sbjct: 798 KIFNPDIIAEAYNIHSLLKIAKARTENEDSN 828
Score = 108 (43.1 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
+LD+ T G+R LR+ I PL D I RL+ +E L N +++ + ++ LPDL++
Sbjct: 292 FLDTTSTKMGQRSLRNSILQPLTDRGSIEMRLEALEELKANDDLLQKLRLEMKSLPDLDK 351
Query: 623 LLGRV 627
L R+
Sbjct: 352 LFSRL 356
Score = 43 (20.2 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 18/68 (26%), Positives = 36/68 (52%)
Query: 213 LLQDS--VAGVKNCEEEADTT--SKFEWLDPSKIRDANRRRPDD---PLYDKRTLYIPPE 265
+L DS V G++ E + D S +++LD + + R + PL D+ ++ + E
Sbjct: 265 MLIDSKTVRGLELVENKLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGSIEMRLE 324
Query: 266 ALKKMSAS 273
AL+++ A+
Sbjct: 325 ALEELKAN 332
Score = 40 (19.1 bits), Expect = 9.3e-17, Sum P(3) = 9.3e-17
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L ET+ L++ S+ + A++ +D++ SF T ++ P+ + N
Sbjct: 545 LSEETVDELLDKIATHISELFMIAEAVAILDLVCSF--TYNLKENNYTIPIF---TNNLL 599
Query: 782 VRQDNGGPVLK 792
+R D+ P+L+
Sbjct: 600 IR-DSRHPLLE 609
Score = 39 (18.8 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 35/173 (20%), Positives = 78/173 (45%)
Query: 521 FSALGGLISHLSRLMLDDV---LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLR 577
F++ GL + +++ ++DD L+ +I+ K + C Y++ ++ S + L
Sbjct: 194 FNSQDGLAA-ITKYLMDDTKKDLKIEEIID-KTFALCAA-SAAISYMEEIISKSSRNL-N 249
Query: 578 SWICHPLK-DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP-DLERLLGRVKARV-QAS 634
++ L+ EG N + + ++ E+V L K L + L ++ Q S
Sbjct: 250 AF--RKLRIQFEGTENTMLIDSKTVRGLELV---ENKLDKNGISLWKFLDTTSTKMGQRS 304
Query: 635 --SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIF 685
+ I+ PL + ++ +++ ++ L+ DLL + E +P L ++F
Sbjct: 305 LRNSILQPLTDRGSIEMRLEA----LEELKANDDLLQKLRLEMKSLPDLDKLF 353
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 219 (82.2 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 42/80 (52%), Positives = 60/80 (75%)
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V++AQ+G FVPC+ +S+ D IF R+GA D + G STF+ E ETAS+L+ A+ SL+
Sbjct: 20 VLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLI 79
Query: 909 ILDELGRGTSTFDGYAIAYA 928
I+DELGRGTST+DG+ ++A
Sbjct: 80 IIDELGRGTSTYDGFGWSHA 99
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 236 (88.1 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 55/145 (37%), Positives = 79/145 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 248 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 303
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 304 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 363
Query: 930 FRQLVER-INCRLLF-ATHYHPLTK 952
R + R C +F AT++ L +
Sbjct: 364 LRHWLARGPTCPHIFVATNFLSLVQ 388
Score = 39 (18.8 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 99 LENLDSRIPSCSVIYIPLIG 118
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 211 (79.3 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 52/111 (46%), Positives = 63/111 (56%)
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT---------- 878
L+TGPNM GKST L+ L V+LAQ GC VP C L + RLG
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAAHCCLPPFTALLGRLGTAMGGGAGAGGG 60
Query: 879 -DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
D + +G S+FL E + A VL A SLV+LDELGRGTST DG +A+A
Sbjct: 61 ADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGLAWA 111
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 236 (88.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 55/145 (37%), Positives = 79/145 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 236 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 291
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ AV
Sbjct: 292 AIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAV 351
Query: 930 FRQLVER-INCRLLF-ATHYHPLTK 952
R + R C +F AT++ L +
Sbjct: 352 LRHWLARGPTCPHIFVATNFLSLVQ 376
Score = 39 (18.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 87 LENLDSRIPSCSVIYIPLIG 106
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 227 (85.0 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 55/146 (37%), Positives = 79/146 (54%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPN G D R ++TGPN GKS L+ L +A +G FVP E + D
Sbjct: 236 VPNSTECGGDKG----RVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVD 291
Query: 870 TIFTRLGATDRIMTGESTFLVECTE-TASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
IFTR+ + + I G STF+++ + A + AT SLV++DE G+GT+T DG A+ A
Sbjct: 292 AIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAA 351
Query: 929 VFRQLVER-INCRLLF-ATHYHPLTK 952
V R + R C +F AT++ L +
Sbjct: 352 VLRHWLARGPTCPHIFVATNFLSLVQ 377
Score = 39 (18.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 624 LGRVKARVQASSCIVLPLIG 643
L + +R+ + S I +PLIG
Sbjct: 87 LENLDSRIPSCSVIYIPLIG 106
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 221 (82.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 87/349 (24%), Positives = 156/349 (44%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISC--IDVLRSFAVTASMSSGAMHRPLILP-QSKN 779
+ +TL + + IEK + + ++C ++ R++ + + L L +
Sbjct: 230 ELKTLELQEKEIIEKILK--DFTQRLACNLTEIKRTYELLGEIDLIVAKARLALELDAYK 287
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
P + +NG VL K HP LG+ VP D+ LG++ D L++TGPN GGK+
Sbjct: 288 PRI-SENG--VLSFKQARHPL-LGKKA---VPFDLTLGKEFD-----LLIITGPNTGGKT 335
Query: 840 TLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
L+ + I+A+ G F+P + L ++ +G I+ STF +
Sbjct: 336 VTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFI 395
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ A + LV+LDELG GT +G A+A A+ +L + +++ TH T E A++
Sbjct: 396 LENAREGDLVLLDELGTGTDPREGAALAKAILEELRGK-KVKVVATTH----TSELAAYA 450
Query: 959 HVTLQHMACAFKSNSENYS-KGDQE-LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
T EN S + D E L YRL G S L +A G+ ++++E A
Sbjct: 451 IET---------ERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQGLGLKEQIIEKA 501
Query: 1017 SHAALAMKKSIGES-FKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDD 1064
+ + + F +++ + EE ++++ + +D+
Sbjct: 502 KSFLKEEELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDE 550
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 221 (82.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 87/349 (24%), Positives = 156/349 (44%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISC--IDVLRSFAVTASMSSGAMHRPLILP-QSKN 779
+ +TL + + IEK + + ++C ++ R++ + + L L +
Sbjct: 230 ELKTLELQEKEIIEKILK--DFTQRLACNLTEIKRTYELLGEIDLIVAKARLALELDAYK 287
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
P + +NG VL K HP LG+ VP D+ LG++ D L++TGPN GGK+
Sbjct: 288 PRI-SENG--VLSFKQARHPL-LGKKA---VPFDLTLGKEFD-----LLIITGPNTGGKT 335
Query: 840 TLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
L+ + I+A+ G F+P + L ++ +G I+ STF +
Sbjct: 336 VTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFI 395
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ A + LV+LDELG GT +G A+A A+ +L + +++ TH T E A++
Sbjct: 396 LENAREGDLVLLDELGTGTDPREGAALAKAILEELRGK-KVKVVATTH----TSELAAYA 450
Query: 959 HVTLQHMACAFKSNSENYS-KGDQE-LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
T EN S + D E L YRL G S L +A G+ ++++E A
Sbjct: 451 IET---------ERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQGLGLKEQIIEKA 501
Query: 1017 SHAALAMKKSIGES-FKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDD 1064
+ + + F +++ + EE ++++ + +D+
Sbjct: 502 KSFLKEEELKLDKLIFDVEQEKRQLEKAKEEVANLLISLKEKEAKLNDE 550
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 183 (69.5 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 50/178 (28%), Positives = 84/178 (47%)
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+A LGC V + L IFT+ ++D ++ S F +C+ ++ L+ + DSL+++
Sbjct: 1 MALLGCGVCASNAQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLLLI 60
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVER-INC-RLLFATHYHPLTKEFASHPHVTLQHMACA 968
DE G+GT DG A+ A R L N + + +TH F S H + C
Sbjct: 61 DEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTIISTH-------FISFFHY-IDLNKCV 112
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
++ + + FLY L +G SYG+ A +A +P ++ AS A ++ S
Sbjct: 113 PLKMDVLLNQSNNSITFLYHLVNGISDSSYGIHCARLAHLPSSLISRASQIATSLSTS 170
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 217 (81.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 74/270 (27%), Positives = 130/270 (48%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC----EMCVL 865
VPN+I+LG+D T+++TGPN GGK+ L+ + V++AQ G +P E+CV
Sbjct: 318 VPNNIMLGKDFT-----TIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVF 372
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
IF +G I STF +L+KA +SLV+ DELG GT +G A+
Sbjct: 373 K---NIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAAL 429
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A ++ ++ R R++ THY P K + + + + + F N+ L
Sbjct: 430 AISILDEVCNR-GARVVATTHY-PELKAYGYNREQVI-NASVEFDVNT---------LSP 477
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAA-SHAALAMKK------SIGESFKSSEQR- 1037
++L G S +++ G+ +V++ A +H + K + ES K++E+
Sbjct: 478 THKLLIGVPGRSNAFEISKRLGLSNRVIDQARNHISTDTNKIENMIAKLEESQKNAERDW 537
Query: 1038 SEFSSLHEEWLKTIVNVSR--VDCNSDDDD 1065
+E +L ++ K + R ++ N + D+
Sbjct: 538 NEAEALRKQSEKLHRELQRQIIEFNEERDE 567
Score = 38 (18.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 350 IEQLETSEQAKARHTNSVISRKLVNVVTPST 380
+E + EQ HT S + R V + PST
Sbjct: 9 LEYNKVKEQL-LEHTASSLGRDKVKHLVPST 38
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 213 (80.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 95/342 (27%), Positives = 149/342 (43%)
Query: 719 VTDLDAETLSI---LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
V + AE + I + + ++A E + +DVL A+ A S GA P I
Sbjct: 239 VAEEKAEMIRIVRTICRMIRQEADGLDEQFRILVRLDVLNGIALFAD-SLGA-ETPEIT- 295
Query: 776 QSKNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLG--EDSDDCLP-RTLLLT 831
++ VR+ P+L + E G G VP D+ LG E D + + +++T
Sbjct: 296 DARFIRVREGRH-PLLALMAR-------ERGVGRVVPLDLGLGGAERPDSHVANQVMVIT 347
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPC-EMCVLSLADTIFTRLGATDRIMTGESTFLV 890
GPN GGK+ L+ T L ++A G VP L + +G I STF
Sbjct: 348 GPNAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQSLSTFSA 407
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
+ A +L++A + ++V+LDELG GT G AI+ AV L ++ ++ TH +
Sbjct: 408 HVSNIAGILERADRRTVVLLDELGTGTEPVQGAAISCAVLADLQDK-GALVIATTHLTDI 466
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
V H + S + + Q L LYRLT G +S+ L++A G+P
Sbjct: 467 ---------VGFVHKRDGMVNASMEFDR--QTLTPLYRLTVGEPGQSHALEIARRYGLPD 515
Query: 1011 KVVEAASHAALAMKKSIGE---SFKSSEQRSEFSSLHEEWLK 1049
+VV A+ M+ E K +R E + E L+
Sbjct: 516 RVVAVATGMLSRMETEFHELLAELKDQRRRHEEALAEAERLR 557
Score = 41 (19.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 249 RPDDPLYDKRTLYIPPEALKKMSASQKQY 277
RPD + D L + L+ M+A KQ+
Sbjct: 80 RPDGAVLDPTELVVLFPILRTMTAIAKQF 108
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 200 (75.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 64/238 (26%), Positives = 102/238 (42%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC-EMCVLSLA 868
V NDI LGED T+++TGPN GGK+ L+ L ++AQ G +P E +++
Sbjct: 318 VANDIYLGEDFT-----TIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVF 372
Query: 869 DTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
+ +F +G I STF T S+L Q SL++ DELG GT +G A+A A
Sbjct: 373 EHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIA 432
Query: 929 VFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYR 988
+ + ++ THY L + H T + + F N E S Y+
Sbjct: 433 ILDASHAK-GASVVATTHYPELKAYGYNRVHAT--NASVEF--NVETLSP-------TYK 480
Query: 989 LTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
L G S ++ G+ + ++ A + + S E++ + E
Sbjct: 481 LLIGVPGRSNAFDISRRLGLSENIITEARSLVDTESADLNDMISSLEEKRNLAETEYE 538
Score = 44 (20.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDA-SEVKKLV---QLNG---YFNGSSSPWSKALE 512
QK + G+ + L + +T D + +K+L LNG Y GS+ S+ ++
Sbjct: 44 QKTQLETEEGAKIIRLRGSAPITGLTDVFAHLKRLEIGGDLNGLEIYQIGSNLRVSRQMK 103
Query: 513 NVMQH--DIGFSA--LGGLISHLSRLMLDDV 539
N M +IG LG L L L+L +V
Sbjct: 104 NFMNDLLEIGVELPLLGALSDEL--LVLKEV 132
Score = 38 (18.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAK 360
S G +E A ++V + QLET E AK
Sbjct: 24 SSLGEQAILELAPATDFQVVQKTQLETEEGAK 55
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 175 (66.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 74/283 (26%), Positives = 127/283 (44%)
Query: 730 LIELFI-EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGG 788
L +L++ +K S+W E H++ + + S+ S A + + P P + +N
Sbjct: 348 LYDLWVLQKISKWKEK-HSVLLEKSIEDLTLFDSLFSFA-NLKWMFPDYCFPEILSENSK 405
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ KGL+HP + + + P D + E+ + +L+TG NM GK+T LR +A
Sbjct: 406 EGISGKGLFHPL-IPSDSRVSNPLDFI--EEQN-----VVLITGSNMSGKTTYLRTIGVA 457
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS-- 906
IL+ G VP L + I T + D + G S F E + +++K +
Sbjct: 458 SILSMAGGPVPASKFSLPVLK-IHTSMRNEDNLEEGISFFYAEVRRLSEIVKKIRDKNSS 516
Query: 907 -LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
LV+LDE+ +GT+T + + ++L + N ++F T H L E A V L+H
Sbjct: 517 HLVLLDEILKGTNTRERSLACKGILKELKK--NRTIVFVTS-HDL--ELAKVEGVILKHF 571
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
E G + F Y++ G S L++ V G+
Sbjct: 572 -------QEEVLDGT--MYFDYKIREGLVETSNALRILVQEGL 605
Score = 60 (26.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 553 DCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
D R +G +LD+ TS+ ++ L + + L+D NNR +V L++ S +V +++
Sbjct: 126 DLFRENGLFSWLDTTFTSNAEQKLIALL--DLEDSSSYNNRENV---LLRQS-IVRSISE 179
Query: 613 YLRKLPDLERLLGRVK 628
+P + RL +K
Sbjct: 180 KTLAIPKILRLASYLK 195
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 161 (61.7 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKS RA L LA LG +VP + + LAD I R AT + TF+ + T+ +
Sbjct: 2 GKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARC-ATPPLGAATVTFMADLTQVS 60
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
++L+ AT+ +L++LDE G+GT DG + A+
Sbjct: 61 AMLRTATERTLLVLDEFGKGTLASDGVGLCAAL 93
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 191 (72.3 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 79/325 (24%), Positives = 146/325 (44%)
Query: 717 HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
H VT L+AE L L E+A + +++ +S + V + + +M + + ++ +
Sbjct: 224 HTVTKLNAE----LASLKAEEAMEEYQILATLSGMVVENIYHIKINMELISQY-DMVFAK 278
Query: 777 SK-NPAVRQDNGGPVLKIKGLWHPFALGEN--GGLPVPNDILLGEDSDDCLPRTLLLTGP 833
+K + ++ D P L G H G VP + +G++ R+L++TGP
Sbjct: 279 AKFSKSI--DGIEPKLNDHGHIHLVNCKHPLLSGKVVPLNFEIGQNY-----RSLIITGP 331
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIMTGESTFLVEC 892
N GGK+ +L+ L + G + + +++ + +F +G I STF
Sbjct: 332 NAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSHM 391
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952
+ +++ + ++L++ DE+G GT +G A+A ++ + C + +THY + K
Sbjct: 392 KNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEFY-LAGCITVASTHYGEI-K 449
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
F S H + A F NSE LY+L G ES L +A V ++V
Sbjct: 450 RF-SEMHDDFMNAAMQF--NSETLEP-------LYKLVIGKSGESNALWIANKMNVRERV 499
Query: 1013 VEAASHAALAMKKSIGESFKSSEQR 1037
++ A A + K+ E S+ R
Sbjct: 500 LKRAK-AYMGNKEYTLEKVNESKIR 523
Score = 37 (18.1 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 366 SVISRKLVNVVTPSTTV 382
S + ++L+N + PST++
Sbjct: 24 SGLGKELINKLEPSTSI 40
Score = 37 (18.1 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 216 DSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRP-----DDPLYDKRTLYIPPEALKK 269
+S+ K+ EEE + + K +D + ++ R R D + ++ T ++ A KK
Sbjct: 121 NSMTEYKSIEEEINFSIKGNSIDSAASKELKRIRNNIDSVDGKIKERLTKFLNSSANKK 179
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 191 (72.3 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 79/325 (24%), Positives = 146/325 (44%)
Query: 717 HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
H VT L+AE L L E+A + +++ +S + V + + +M + + ++ +
Sbjct: 224 HTVTKLNAE----LASLKAEEAMEEYQILATLSGMVVENIYHIKINMELISQY-DMVFAK 278
Query: 777 SK-NPAVRQDNGGPVLKIKGLWHPFALGEN--GGLPVPNDILLGEDSDDCLPRTLLLTGP 833
+K + ++ D P L G H G VP + +G++ R+L++TGP
Sbjct: 279 AKFSKSI--DGIEPKLNDHGHIHLVNCKHPLLSGKVVPLNFEIGQNY-----RSLIITGP 331
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIMTGESTFLVEC 892
N GGK+ +L+ L + G + + +++ + +F +G I STF
Sbjct: 332 NAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSHM 391
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952
+ +++ + ++L++ DE+G GT +G A+A ++ + C + +THY + K
Sbjct: 392 KNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEFY-LAGCITVASTHYGEI-K 449
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
F S H + A F NSE LY+L G ES L +A V ++V
Sbjct: 450 RF-SEMHDDFMNAAMQF--NSETLEP-------LYKLVIGKSGESNALWIANKMNVRERV 499
Query: 1013 VEAASHAALAMKKSIGESFKSSEQR 1037
++ A A + K+ E S+ R
Sbjct: 500 LKRAK-AYMGNKEYTLEKVNESKIR 523
Score = 37 (18.1 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 366 SVISRKLVNVVTPSTTV 382
S + ++L+N + PST++
Sbjct: 24 SGLGKELINKLEPSTSI 40
Score = 37 (18.1 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 216 DSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRP-----DDPLYDKRTLYIPPEALKK 269
+S+ K+ EEE + + K +D + ++ R R D + ++ T ++ A KK
Sbjct: 121 NSMTEYKSIEEEINFSIKGNSIDSAASKELKRIRNNIDSVDGKIKERLTKFLNSSANKK 179
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 138 (53.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+G D ++ +S F E ++ A+++Q A ++SLV+LDEL R TST +G AI YA+ +++
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 935 ERINCRLLFATHY 947
+++ ATH+
Sbjct: 61 -KLHSYTFLATHF 72
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 138 (53.6 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+G D ++ +S F E ++ A+++Q A ++SLV+LDEL R TST +G AI YA+ +++
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 935 ERINCRLLFATHY 947
+++ ATH+
Sbjct: 61 -KLHSYTFLATHF 72
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 161 (61.7 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 36/127 (28%), Positives = 65/127 (51%)
Query: 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGEST 887
+++TGPN GGK+ LR+ +A ++ Q G FVP E + +L +FT +
Sbjct: 329 IIVTGPNRGGKTVFLRSVGVAQLMMQCGMFVPAESFLANLTTGLFTHFKREEDKTMERGK 388
Query: 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947
F E + ++ T ++L++L+E T+ +G IA + L+E+ ++ F TH
Sbjct: 389 FEEELARMSVIVDYLTPNALLLLNESFSATNEREGSEIARQIVSTLIEK-GIKVYFVTHL 447
Query: 948 HPLTKEF 954
+ T+ F
Sbjct: 448 YEFTRSF 454
Score = 38 (18.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 693 SDGLDKFLTQFEAAIDSDF 711
S G +F T + +D D+
Sbjct: 143 SQGFRRFFTMIQRELDDDY 161
>UNIPROTKB|H9L225 [details] [associations]
symbol:H9L225 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GeneTree:ENSGT00550000074949 EMBL:AADN02030667
Ensembl:ENSGALT00000035739 Uniprot:H9L225
Length = 187
Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 37/108 (34%), Positives = 57/108 (52%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
Q+ +K +Y D +L + G Y + DAEI KEL+ I I +
Sbjct: 7 QFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELN--ICCHQDHNFMTASIPTHRLFV 64
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTV 382
V +LVA+G+KVG I+Q+ET+ +A + +S+ SRKL + T ST +
Sbjct: 65 HVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLI 112
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 143 (55.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 50/174 (28%), Positives = 82/174 (47%)
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
P +++TG NM GKST LR + +LA +G V + A + T L +D +
Sbjct: 424 PFFIIITGANMAGKSTYLRTVGVNYLLACIGAPVWAAKMEIFPARLV-TSLRTSDSLTDN 482
Query: 885 ESTFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
ES F E ++ K A ++ +ILDE+ +GT++ D ++A+ +Q + ++ +
Sbjct: 483 ESYFFAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIKQFMS-MDANGI 541
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS-KGD---QELVFLYRLTSG 992
ATH + L + AF N NY + D EL F Y++ SG
Sbjct: 542 IATH------------DLLLGTLIDAFPQNIRNYCFEADITNNELTFSYQMRSG 583
Score = 52 (23.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
Y++ T GK+ L +W L++ E I R + + L E
Sbjct: 135 YINRTSTPIGKQRLANWFNAHLEEKEAIEQRQEAIRELSSELE 177
>UNIPROTKB|Q7NE77 [details] [associations]
symbol:gll4003 "Gll4003 protein" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
EMBL:BA000045 GenomeReviews:BA000045_GR SUPFAM:SSF48334 HSSP:Q56215
GO:GO:0032300 RefSeq:NP_926949.1 ProteinModelPortal:Q7NE77
GeneID:2602406 KEGG:gvi:gll4003 PATRIC:22047503
HOGENOM:HOG000022931 OMA:ESYFFAE ProtClustDB:CLSK923279
BioCyc:GVIO251221:GH9A-4052-MONOMER Uniprot:Q7NE77
Length = 619
Score = 152 (58.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 63/217 (29%), Positives = 96/217 (44%)
Query: 796 LWHPFALGENGGLPVPNDILLGEDSDDCLPRT-LLLTGPNMGGKSTLLRATCLAVILAQL 854
L HP +GE + V ND+ LG P T LL+TG NM GKSTLLR+ L ++LA
Sbjct: 405 LGHPL-IGE--AVRVANDVTLGP------PGTFLLVTGSNMSGKSTLLRSIGLNIVLALA 455
Query: 855 GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT---ETASVLQKATQDSLVILD 911
G V C + T+ T + D + +G S ++ E E + A + L +LD
Sbjct: 456 GAPV-CARSLRLPPVTLKTSMRVQDSLASGLSFYMAELQRLKEVVDAARPAERPLLYLLD 514
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
E+ GT++ + V L+ R L A H L A P + F+
Sbjct: 515 EILLGTNSAERQVAVRRVLSFLLGR---GALGAISTHDLA--LADLPELAAAARTVHFRE 569
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
+ + G + F YR+ G P + L++ + G+
Sbjct: 570 HFAAGAAGPV-MTFDYRMRPGVAPTTNALKLLELVGL 605
Score = 42 (19.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 561 TLYLDSCV--TSSGKRLLRSWICHP 583
+L+ +C T G+RLL W+ P
Sbjct: 138 SLFQLTCTAHTPMGRRLLARWLLEP 162
>UNIPROTKB|H9L226 [details] [associations]
symbol:H9L226 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GeneTree:ENSGT00550000074949 EMBL:AADN02030667
Ensembl:ENSGALT00000035740 Uniprot:H9L226
Length = 404
Score = 138 (53.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
Q+ +K +Y D +L + G Y + DAEI KEL+ I I +
Sbjct: 171 QFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELN--ICCHQDHNFMTASIPTHRLFV 228
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
V +LVA+G+KVG I+Q+ET+ +A + +S+ SRKL + T ST + + P
Sbjct: 229 HVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLIGEDVNP 282
>UNIPROTKB|H9L224 [details] [associations]
symbol:H9L224 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR016151
Pfam:PF01624 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GeneTree:ENSGT00550000074949
EMBL:AADN02030667 Ensembl:ENSGALT00000035738 Uniprot:H9L224
Length = 261
Score = 132 (51.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 37/108 (34%), Positives = 57/108 (52%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
Q+ +K +Y D +L + G Y + DAEI KEL+ I I +
Sbjct: 107 QFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELN--ICCHQDHNFMTASIPTHRLFV 164
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTV 382
V +LVA+G+KVG I+Q+ET+ +A + +S+ SRKL + T ST +
Sbjct: 165 HVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLI 212
>UNIPROTKB|A8J417 [details] [associations]
symbol:CHLREDRAFT_175628 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 EMBL:DS496136
RefSeq:XP_001696056.1 ProteinModelPortal:A8J417 SMR:A8J417
EnsemblPlants:EDP01005 GeneID:5721674 KEGG:cre:CHLREDRAFT_175628
Uniprot:A8J417
Length = 594
Score = 138 (53.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV-ERINCRLLFATHYHPLTK 952
AT SLVI+DELGRGTST+DG+ +A+A+ L LFATH+H LT+
Sbjct: 506 ATSHSLVIIDELGRGTSTYDGFGLAWAISEHLAGPGCGAPCLFATHFHELTE 557
>UNIPROTKB|A7UVX1 [details] [associations]
symbol:NCU10895 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 EMBL:AABX02000002
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 OrthoDB:EOG4VHPFT RefSeq:XP_001728471.1
ProteinModelPortal:A7UVX1 EnsemblFungi:EFNCRT00000000709
GeneID:5847835 KEGG:ncr:NCU10895 Uniprot:A7UVX1
Length = 625
Score = 141 (54.7 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 38/112 (33%), Positives = 53/112 (47%)
Query: 781 AVRQDNGGPVLK----IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
A QD P++ IK HP V ND+ G+ S R ++TG NM
Sbjct: 317 ATTQDYVRPMITDSMVIKQARHPIVEARTDQY-VANDVYSGDQSG----RFQVITGGNMS 371
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
GKST +R+ L I+AQ+G FVP + +S+ D +F R+ D TF
Sbjct: 372 GKSTFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTF 423
Score = 42 (19.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVL--RNGDILPYKVYRDCLRMDGQTLYLDSCV 568
LEN FSAL + L R+ + V+ IL K Y + TL C
Sbjct: 69 LENNFYTPCAFSALRKALEELVRIDFERVIVWELNSILMLKKYLSGIDALHGTLEAAGCK 128
Query: 569 TSSGKRLLRSWI 580
+ RLLR WI
Sbjct: 129 S----RLLR-WI 135
>UNIPROTKB|A9WD21 [details] [associations]
symbol:Caur_0339 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633979.1 ProteinModelPortal:A9WD21
GeneID:5827952 KEGG:cau:Caur_0339 PATRIC:21411210
HOGENOM:HOG000020534 OMA:THFEREE ProtClustDB:CLSK865138
BioCyc:CAUR324602:GIXU-342-MONOMER Uniprot:A9WD21
Length = 508
Score = 132 (51.5 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 36/110 (32%), Positives = 51/110 (46%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPN GGK+T R LA LGC VP L LAD IFT +
Sbjct: 329 RILVVTGPNQGGKTTFARMFGQLHYLASLGCPVPGREAGLFLADRIFTHFERIEDSQNLR 388
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE 935
+ L +AT DS+ IL+E+ T+ D ++ + +L +
Sbjct: 389 GKLEDDLVRMHRALIQATPDSIFILNEIFSSTTVQDALFLSKEIMARLTD 438
Score = 48 (22.0 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 13/62 (20%), Positives = 31/62 (50%)
Query: 568 VTSSGKRL-LRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
+T G+ L+ + PL+D + + R +V + L K + ++ + Q+ + + R L
Sbjct: 36 ITKPGQEYNLQPFFWTPLRDAQAVRYRQEVFQDLEK-APILEAIKQFAEGMRVVRRYLAM 94
Query: 627 VK 628
++
Sbjct: 95 ME 96
>UNIPROTKB|Q0J8X3 [details] [associations]
symbol:Os04g0682900 "Os04g0682900 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533
GO:GO:0005524 GO:GO:0003684 EMBL:AP008210 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0000404 KO:K08736
RefSeq:NP_001054300.1 UniGene:Os.58403
EnsemblPlants:LOC_Os04g58630.2 GeneID:4337442 KEGG:osa:4337442
Gramene:Q0J8X3 OMA:FIASVDQ Uniprot:Q0J8X3
Length = 813
Score = 113 (44.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 63/231 (27%), Positives = 101/231 (43%)
Query: 245 ANRRRPDDPLYD--KRTLYIPPE-----AL----KKMSASQKQYWNVKSQYMDVLLFFKV 293
A R +P P D +R L PP A+ K + ++Q ++K+++ DVLL +V
Sbjct: 63 AKRAKPSPPPSDYVRRRLLEPPRPPPPAAVNPSGKAYTPLEQQVVDLKARHPDVLLMVEV 122
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
G + + DA + L I I + V +LVA G+KVG + Q
Sbjct: 123 GYRFRFFGEDAAVAASVLG--IIAHPDHSFLTASIPTFRLGFHVRRLVAAGHKVGVVRQT 180
Query: 354 ETSEQAKARH----TNSVISRKLVNVVTPSTT------VDGTIGPD--AVHLLAI--KEG 399
ET+ KA H + +R L V T +T ++G PD + +L+ + KE
Sbjct: 181 ETAA-IKAAHGGGAAGTPFARGLSAVYTRATIEAAAGELEGGGAPDEGSRYLVCVVDKEV 239
Query: 400 NC-GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ G + V G ++ + V G D S L A+L+ ++P EVI
Sbjct: 240 DAMGTEGFEVKIGVVAIEVSTGEVVHGEFMDGVSRNGLEAVLLGLAPVEVI 290
Score = 71 (30.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 557 MDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
+DG +++ T+ G RL R W+ HPL D I R D V + ++
Sbjct: 431 LDGSLFQTMNNTCTAFGSRLFRHWLTHPLCDRNQICTRHDAVSEISES 478
>UNIPROTKB|Q7RIF1 [details] [associations]
symbol:PY03673 "Phosphatase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006301 "postreplication repair" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045128 "negative regulation of reciprocal
meiotic recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
EMBL:AABL01001075 RefSeq:XP_723860.1 ProteinModelPortal:Q7RIF1
GeneID:3789185 KEGG:pyo:PY03673 EuPathDB:PlasmoDB:PY03673
eggNOG:NOG330919 Uniprot:Q7RIF1
Length = 1427
Score = 112 (44.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 59/258 (22%), Positives = 111/258 (43%)
Query: 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFT--RLGATDRI--- 881
+LLTG NM GK+TL + L+ LG + PC+ ++ ++ + ++I
Sbjct: 949 ILLTGENMSGKTTLSFTIMCILFLSNLGMYAPCDKRSIVGKFREFYSLKNINYQEQIENM 1008
Query: 882 -MTGESTFLV-----ECTETASVLQKATQDS--LVILDELGRGTSTFDGYAIAYAVFRQL 933
+ E T + E E S+ +K T+D ++ DE T+ D I AV L
Sbjct: 1009 SLFREQTHYINSIIEEIKENYSINKKNTRDEEIFILFDEPCIATTPLDNAVIISAVAEYL 1068
Query: 934 VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
+ C ++ + +Y L K + S ++ + + +++ NY + DQ + L G
Sbjct: 1069 KKY--CGIIISHNYDLLNKIYQSE-NIEFKKI-----NDNVNYLR-DQPNGCVLTLEDGI 1119
Query: 994 CPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVN 1053
C S L+ V L + K + +K S ++L+ ++LK + N
Sbjct: 1120 CKSSQALETCKYTNTDSNV--------LKLLKMYEKKYKLIYNLS--NTLYYKFLKYLKN 1169
Query: 1054 V--SRVDCNSDDDDAYDT 1069
+++D N D+ Y++
Sbjct: 1170 KKENKIDLNKFFDNFYES 1187
Score = 77 (32.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/93 (26%), Positives = 48/93 (51%)
Query: 281 KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKL 340
K +Y + ++ +VG FYE Y LD+ + L+ K ++ C G +S I+ A+ L
Sbjct: 182 KKKYNNCIILSRVGDFYETYGLDSIFLIEFLNIK-KMNNKLSC---GFIKSSINKALSIL 237
Query: 341 VARGYKVGRIEQL-ETSEQAKARHTNSVISRKL 372
V E++ E S +AK R+ + +++ ++
Sbjct: 238 TNNNLNVCIYEEINEQSFKAKKRYLSQIVTPEM 270
>UNIPROTKB|Q23YW9 [details] [associations]
symbol:TTHERM_00857890 "MutS domain II family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:GG662557 RefSeq:XP_001021931.1
ProteinModelPortal:Q23YW9 EnsemblProtists:EAS01686 GeneID:7832209
KEGG:tet:TTHERM_00857890 Uniprot:Q23YW9
Length = 1537
Score = 115 (45.5 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
L G GKS L+++ + I+AQ+GC+VP + V+SL + I ++ TD I +S+F
Sbjct: 1244 LFLGQQNCGKSILIKSIAIIQIMAQVGCYVPAKNGVISLKNLILSKFYTTDSIEEKQSSF 1303
Query: 889 LVECTETASVLQ-KATQD 905
E + +++ KA++D
Sbjct: 1304 TSELQQLDFIIKSKASKD 1321
Score = 76 (31.8 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 559 GQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKL 617
G + L T +GKRLLRS + PL D++ + +R V E+ M N + ++ Q ++
Sbjct: 949 GSLISLFKIQTVAGKRLLRSNLLQPLNDLKSLQDRQSAVFEFTM-NQDSILSQLQLQLQI 1007
Query: 618 PDLE 621
D++
Sbjct: 1008 IDMQ 1011
Score = 47 (21.6 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL-VERINCRLLFATHYHPLTK 952
L K+ +++++DE + D +I+ A ++ + N LL A+ Y+ L +
Sbjct: 1335 LSKSKDKTIILIDEFCSSSQYEDNISISLAFLEEISICFPNSFLLCASKYYELVQ 1389
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 91 SLFSSIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQ 138
S+FSS +K+ ++D R N+N+ + G + L+ S+Q
Sbjct: 722 SIFSS--NKY-QIDKRLNSNQMHNSKGMQKNDTKINSNKTQLQLFSKQ 766
>UNIPROTKB|A3KGN1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN1
Ensembl:ENST00000430241 HOGENOM:HOG000172377 Uniprot:A3KGN1
Length = 135
Score = 105 (42.0 bits), Expect = 0.00015, P = 0.00015
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRL 941
+G+S +L + A + AT SLV++DE G+GT+T DG A+ AV R + R C
Sbjct: 54 SGKSIYL---KQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPH 110
Query: 942 LF-ATHYHPLTK 952
+F AT++ L +
Sbjct: 111 IFVATNFLSLVQ 122
>UNIPROTKB|A8J0I3 [details] [associations]
symbol:CHLREDRAFT_174349 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR016151 Pfam:PF00488
PROSITE:PS00486 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 EMBL:DS496130
eggNOG:COG0249 GO:GO:0000710 Gene3D:3.40.1170.10 GO:GO:0032300
GO:GO:0000404 RefSeq:XP_001694807.1 ProteinModelPortal:A8J0I3
STRING:A8J0I3 EnsemblPlants:EDP02391 GeneID:5720367
KEGG:cre:CHLREDRAFT_174349 Uniprot:A8J0I3
Length = 317
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 875 LGATDRIMTG----ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
+GA DR+ +TF E ++ A +L A + SLV+ DELGRGT+T DG A+A AV
Sbjct: 220 VGAEDRVPRAWHKVRATFFEEMSDAAGLLSAADRRSLVLCDELGRGTATHDGVAVAGAVL 279
Query: 931 RQLV 934
QL+
Sbjct: 280 SQLL 283
>UNIPROTKB|F1M0A4 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR016151
Pfam:PF01624 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.40.1170.10 SUPFAM:SSF55271 IPI:IPI00195438
Ensembl:ENSRNOT00000018312 ArrayExpress:F1M0A4 Uniprot:F1M0A4
Length = 186
Score = 117 (46.2 bits), Expect = 0.00022, P = 0.00022
Identities = 36/104 (34%), Positives = 53/104 (50%)
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
VK + D +L + G Y + DAEI +EL+ L I + V +
Sbjct: 1 VKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRR 58
Query: 340 LVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTV 382
LVA+GYKVG ++Q ET+ +A + +SV SRKL + T ST +
Sbjct: 59 LVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLI 102
>UNIPROTKB|F1M551 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 RGD:1563954
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 Gene3D:3.40.1170.10
SUPFAM:SSF55271 IPI:IPI00947919 Ensembl:ENSRNOT00000064966
ArrayExpress:F1M551 Uniprot:F1M551
Length = 370
Score = 128 (50.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 38/108 (35%), Positives = 56/108 (51%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +VK + D +L + G Y + DAEI +EL+ L I +
Sbjct: 160 QYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFV 217
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTV 382
V +LVA+GYKVG ++Q ET+ +A + +SV SRKL + T ST +
Sbjct: 218 HVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLI 265
Score = 38 (18.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 104 DARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYS 145
D++ AN+++ Q G S F KT + +++ + S+Y+
Sbjct: 118 DSKSQANQKDTQFGPSP---EAFQKTSTCKPFNRR-SKSIYT 155
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1085 1073 0.00085 123 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 185
No. of states in DFA: 627 (67 KB)
Total size of DFA: 490 KB (2229 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 93.70u 0.12s 93.82t Elapsed: 00:00:15
Total cpu time: 93.76u 0.12s 93.88t Elapsed: 00:00:15
Start: Thu May 9 13:38:47 2013 End: Thu May 9 13:39:02 2013
WARNINGS ISSUED: 1