BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040956
(1085 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224119772|ref|XP_002331157.1| predicted protein [Populus trichocarpa]
gi|222873240|gb|EEF10371.1| predicted protein [Populus trichocarpa]
Length = 1107
Score = 1573 bits (4072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1103 (71%), Positives = 892/1103 (80%), Gaps = 32/1103 (2%)
Query: 1 MQRQQSIHSFFQKCS-PANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSL 59
M RQ+SI SFFQK S P+ S A + + R+ F+ KQ N + QP + DSS+
Sbjct: 1 MPRQKSILSFFQKPSQPSQSSDAGERTDGRQAPLFSAKQHN---QNVSQPAIHGPVDSSI 57
Query: 60 EIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNS 119
EIRGTDTPPEKVPRQILP K NE + +SLFSSIMHKFVKVD R+ N RN+ H S
Sbjct: 58 EIRGTDTPPEKVPRQILPVNIKENE-EAKVASLFSSIMHKFVKVDDREKPNGRNQVH--S 114
Query: 120 STVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGM 179
+ VCS + Q G +LYSEKDN F+ +G+ +Q V E DV GP TPGM
Sbjct: 115 ANVCSTSVTFTIPKELPQHGMDTLYSEKDNGFSSSGMVDQTSVLNIESVNDVPGPHTPGM 174
Query: 180 HRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDP 239
+VPRLKRILED DK S L+SSKR++ LQD + +KN EE +++TSKFEWLDP
Sbjct: 175 RPLVPRLKRILEDVPKFEDKNGCSFLNSSKRVKPLQDPASLIKNHEEISNSTSKFEWLDP 234
Query: 240 SKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYEL 299
++IRDANRRRP+DPLYDK+TLY+PP+ALKKMSASQKQYW VKSQYMDVLLFFKVGKFYEL
Sbjct: 235 AQIRDANRRRPNDPLYDKKTLYLPPDALKKMSASQKQYWTVKSQYMDVLLFFKVGKFYEL 294
Query: 300 YELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQA 359
YELDAEIGHKELDWK+TLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR+EQLETS+QA
Sbjct: 295 YELDAEIGHKELDWKMTLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRVEQLETSDQA 354
Query: 360 KARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
K+R NSVI RKLV VVTPSTT +GPDAVHLLAIKEGN G DNG+ YGFAFVDCAA
Sbjct: 355 KSRGANSVIQRKLVQVVTPSTTTGHNMGPDAVHLLAIKEGNYGVDNGATAYGFAFVDCAA 414
Query: 420 LRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AGSAALELTPA 478
LRVWVG+INDDAS AALGALLMQ+SPKEVIYENR L + AQK LRK+S GS AL+L+P
Sbjct: 415 LRVWVGSINDDASHAALGALLMQISPKEVIYENRELSRGAQKELRKYSLIGSTALQLSPV 474
Query: 479 MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD 538
+ TDF+DASEVK L+Q YF S++PW+ AL+++M DI ALGGLI HLSRLM DD
Sbjct: 475 LPGTDFVDASEVKNLIQSKDYFKWSTNPWNHALDSIMHQDISLCALGGLIGHLSRLMFDD 534
Query: 539 VLRNGDILPYKVYRDCLRMDGQTL----------------------YLDSCVTSSGKRLL 576
VLRN DILPY+VY+ CLRMDGQTL YLD+CVTSSGKRLL
Sbjct: 535 VLRNADILPYQVYKGCLRMDGQTLVNLEVFSNSADGGSSGQCTLFNYLDNCVTSSGKRLL 594
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC 636
R+WICHPLK VEGINNRLDV+E LM SE+++V+AQYLRKLPDLER+LGRVK QAS
Sbjct: 595 RNWICHPLKHVEGINNRLDVIENLMARSEIMLVIAQYLRKLPDLERMLGRVKVSFQASGS 654
Query: 637 IVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGL 696
+ LPLI KK+LKQ+VKVFGSLVKGLR MDLL+L+ KE +I SLS+ FK P GS+GL
Sbjct: 655 LALPLISKKMLKQRVKVFGSLVKGLRNGMDLLLLLLKEEQLISSLSKNFKLPELLGSNGL 714
Query: 697 DKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRS 756
+KFL QFEAA+DS+FP+YQN DVTD +A LS+LIELFIEKA+QW EVIHAI+CIDVLRS
Sbjct: 715 EKFLVQFEAAVDSEFPNYQNRDVTDSEAGMLSVLIELFIEKAAQWGEVIHAINCIDVLRS 774
Query: 757 FAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL 816
FAVTASMS GAM RP+ILP SK+ + + GGPVLKIKGLWHPFALGEN GLPVPND+ L
Sbjct: 775 FAVTASMSCGAMCRPVILPDSKSISFCEGEGGPVLKIKGLWHPFALGEN-GLPVPNDVFL 833
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
GEDSD PRT+LLTGPNMGGKSTLLRATCLAVILAQLGCFVP E CVLSLAD IFTRLG
Sbjct: 834 GEDSDSQHPRTVLLTGPNMGGKSTLLRATCLAVILAQLGCFVPGEKCVLSLADIIFTRLG 893
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
ATDRIMTGESTF +ECTETASVLQ ATQDSLV+LDELGRGTST+DGYAIAYAVFR LVE+
Sbjct: 894 ATDRIMTGESTFFIECTETASVLQNATQDSLVLLDELGRGTSTYDGYAIAYAVFRHLVEK 953
Query: 937 INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
INCRLLFATHYHPLTKEFASHPHV+LQ+MACAFKS E+YSK D++LVFLYRL SGACP
Sbjct: 954 INCRLLFATHYHPLTKEFASHPHVSLQYMACAFKSKPESYSKSDRDLVFLYRLASGACPG 1013
Query: 997 SYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSR 1056
SYGLQVA MAG+P+ VVEAASHA MK S GESFKSSE+RSEFS+LHEEWLKT+VNVSR
Sbjct: 1014 SYGLQVATMAGIPEHVVEAASHAGQLMKNSTGESFKSSERRSEFSTLHEEWLKTLVNVSR 1073
Query: 1057 V-DCNSDDDDAYDTLFCLWHELK 1078
+ DCN DDDD YDTLFCLWHELK
Sbjct: 1074 IRDCNFDDDDVYDTLFCLWHELK 1096
>gi|255546545|ref|XP_002514332.1| DNA mismatch repair protein MSH6-2, putative [Ricinus communis]
gi|223546788|gb|EEF48286.1| DNA mismatch repair protein MSH6-2, putative [Ricinus communis]
Length = 1089
Score = 1532 bits (3966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1107 (69%), Positives = 887/1107 (80%), Gaps = 44/1107 (3%)
Query: 1 MQRQQSIHSFFQKCSPA--NKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSS 58
MQRQ+SI SFFQK PA SGA D K F+++++N S +P
Sbjct: 1 MQRQKSILSFFQKPLPAGNQNSGAGDAFDGGKAPRFSSEKQNQKVTVSSEP--------- 51
Query: 59 LEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGN 118
EI+GTDTPPEKVPRQILP NE G SSLFSSIMHKFVK D ++ +R +
Sbjct: 52 -EIQGTDTPPEKVPRQILPVRSTENESIKG-SSLFSSIMHKFVKTDDKEKPLQRILANHT 109
Query: 119 SSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPG 178
S+ V G+ D + S+QGT +LY EK N + N + V ++DV GP+TPG
Sbjct: 110 STNVS---GRFTDKKGLSKQGTTALYPEKGNPCSYNAV-----VDVESNDDDVPGPETPG 161
Query: 179 MHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLD 238
+ +VPRLKRI D+ + DK + LL++SKR +LL DS A KN + +D+TSKFEWLD
Sbjct: 162 VQPLVPRLKRIQHDSPKVDDKDATFLLNASKRAKLLLDSTAVSKNQGQISDSTSKFEWLD 221
Query: 239 PSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYE 298
P +IRD N RRP DPLYDK+TLYIPP+AL+ MSASQKQYW+VKSQYMDV+LFFKVGKFYE
Sbjct: 222 PLRIRDINGRRPSDPLYDKKTLYIPPDALRIMSASQKQYWSVKSQYMDVVLFFKVGKFYE 281
Query: 299 LYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQ 358
LYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS Q
Sbjct: 282 LYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSVQ 341
Query: 359 AKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
AKAR NSVI RKLV V+TPST DG IGPDAVHLLA+KEGN G DNG YGFAFVDCA
Sbjct: 342 AKARGANSVIQRKLVQVITPSTATDGNIGPDAVHLLALKEGNYGLDNGETAYGFAFVDCA 401
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AGSAALELTP 477
+LR WVG+INDD SCAALGALLMQVSPKEVIYE +G+ +EAQKALRK+S GS A++L P
Sbjct: 402 SLRFWVGSINDDTSCAALGALLMQVSPKEVIYETKGISREAQKALRKYSITGSTAVQLNP 461
Query: 478 AMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD 537
A T+FLDASEV+ +Q GYF GSSSPW+ +++M HDI +ALG L+ HLSRLMLD
Sbjct: 462 APPSTNFLDASEVRNSIQSKGYFRGSSSPWNNVFDSIMHHDITLNALGTLVDHLSRLMLD 521
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSSGKRLLR 577
DVLRNGDILPY+VY CLRMDGQTL YLD+CVTSSGKRLLR
Sbjct: 522 DVLRNGDILPYQVYSGCLRMDGQTLINLEIFNNNSDGGLSGTLFNYLDNCVTSSGKRLLR 581
Query: 578 SWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCI 637
W+CHPLK VEGINNRL+VVE LM S++++V++QYLRK+PD+ER+LGRVKA QAS+ +
Sbjct: 582 KWMCHPLKSVEGINNRLNVVEDLMTQSDIMLVISQYLRKIPDIERMLGRVKASFQASASL 641
Query: 638 VLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLD 697
VLPLIGKKVL+Q+VKVFGSLVKGLRI +DLL+L+ KE II S+ FK P +GS GLD
Sbjct: 642 VLPLIGKKVLRQRVKVFGSLVKGLRIGIDLLLLLQKEDRIISLFSKNFKLPELNGSAGLD 701
Query: 698 KFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSF 757
KFL+QFEAA+DS+FP+YQNHDVTD +AETL +LIELFIEKAS WSEVI AI+CIDVLRSF
Sbjct: 702 KFLSQFEAAVDSEFPNYQNHDVTDSEAETLFVLIELFIEKASCWSEVIQAINCIDVLRSF 761
Query: 758 AVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLG 817
A+TASMSSG+M RP+ILP+SK+ QD GGPVLKI+GLWHPFALGENGG+PVPND+ LG
Sbjct: 762 AITASMSSGSMSRPVILPESKSSMFGQDKGGPVLKIRGLWHPFALGENGGMPVPNDLHLG 821
Query: 818 EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA 877
ED D LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP E CVLSL D IFTRLGA
Sbjct: 822 EDLDGYLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPSEKCVLSLVDIIFTRLGA 881
Query: 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI 937
TDRIMTGESTF +ECTETASVL+ ATQDSLV+LDELGRGTSTFDGYAIAYAVFR LVE++
Sbjct: 882 TDRIMTGESTFFIECTETASVLKNATQDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEKV 941
Query: 938 NCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPES 997
NCRLLFATHYHPLTKEF S+P V LQHMACAFKS SE+YS+ DQ+LVFLYRL SGACPES
Sbjct: 942 NCRLLFATHYHPLTKEFGSNPRVILQHMACAFKSKSESYSESDQDLVFLYRLASGACPES 1001
Query: 998 YGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
YGLQVAVMAG+P+ VVEAAS A MKKSIGESF+SSE+RSEFS+LHE+ LKT+++ +++
Sbjct: 1002 YGLQVAVMAGIPENVVEAASQAGQVMKKSIGESFRSSEKRSEFSTLHEDGLKTLLSATQI 1061
Query: 1058 -DCNSDD-DDAYDTLFCLWHELKNSYQ 1082
CN D+ DD YDTLFCLWHELKNSYQ
Sbjct: 1062 GGCNFDNTDDVYDTLFCLWHELKNSYQ 1088
>gi|225445280|ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera]
Length = 1122
Score = 1526 bits (3950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/1117 (68%), Positives = 892/1117 (79%), Gaps = 38/1117 (3%)
Query: 1 MQRQQSIHSFFQKCSPANK----SGAADMSGARKDSNFTTKQRN---PVGDSSGQPTVSA 53
MQRQ+SI SFFQK SP ++ S AAD S R S F KQRN VGD QPT
Sbjct: 1 MQRQKSILSFFQKPSPEDQKCGGSSAADTSAGRSVSQFPAKQRNQNFAVGD---QPTFQI 57
Query: 54 TEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSS---IMHKFVKVDARQNAN 110
+ SS+EI GTDTPPEKVPRQ++P+ F AN+ SS S IMHKFVKVD R+++
Sbjct: 58 PKHSSMEITGTDTPPEKVPRQMIPASFTANDDRKAASSSSSLFSSIMHKFVKVDERESSC 117
Query: 111 KRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEM-NE 169
+R E H SS CS D E ++G K++ FN NQ C +E ++
Sbjct: 118 ERKEMHSGSSNTCST-SVNSDCEVLPKEGNVFHSDAKESGFNSTKQVNQVCSLHSESGDD 176
Query: 170 DVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEAD 229
D+ GP+TPGM VPRLKRI EDN +K SLLDSSKR++LLQ+S G KN E +D
Sbjct: 177 DIIGPETPGMRPFVPRLKRIQEDNFE--NKNECSLLDSSKRLKLLQNSTTGNKNYGEVSD 234
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
TTSKFEWLDPS+ RDANRRRP D LYDKRTLYIPP+AL+KMSASQKQYW++K QYMDV+L
Sbjct: 235 TTSKFEWLDPSRKRDANRRRPGDALYDKRTLYIPPDALQKMSASQKQYWSIKCQYMDVVL 294
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
FFKVGKFYELYELDAEIGHKELDWK+T SGVGKCRQVGISESGID+AV+KL+ARGYKVGR
Sbjct: 295 FFKVGKFYELYELDAEIGHKELDWKMTFSGVGKCRQVGISESGIDEAVQKLIARGYKVGR 354
Query: 350 IEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVV 409
+EQLETSEQAKAR + SVI RKLV+VVTPST DG IGPDAVHLL++KEGN +NGSV+
Sbjct: 355 MEQLETSEQAKARGSTSVIQRKLVHVVTPSTACDGNIGPDAVHLLSVKEGNNILENGSVI 414
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-A 468
YGFAFVDCAAL+ W+G+I+DDASCAALGALLMQVSPKEVIYEN+ L KEAQKAL+K+S +
Sbjct: 415 YGFAFVDCAALKFWIGSISDDASCAALGALLMQVSPKEVIYENQELSKEAQKALKKYSLS 474
Query: 469 GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLI 528
G AL+LTP TDF+DAS+V+ L+ L GYF GS + W AL+ VM HD+ ALGGL+
Sbjct: 475 GFTALKLTPLPLCTDFVDASKVRNLIHLKGYFKGSDNSWDHALDGVMHHDLALCALGGLL 534
Query: 529 SHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCV 568
HLSRL LDD LRNGDILPY+VY CLRMDGQTL YLD+CV
Sbjct: 535 GHLSRLKLDDTLRNGDILPYQVYSGCLRMDGQTLVNLEIFSNNADGGSSGTLYKYLDNCV 594
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK 628
TSSGKRLLR+WICHPLKDV+GINNRL+VVE+LM N+E + +AQ LRKLPDLERLLG+VK
Sbjct: 595 TSSGKRLLRNWICHPLKDVQGINNRLNVVEHLMTNTETMSFIAQCLRKLPDLERLLGQVK 654
Query: 629 ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPP 688
A VQ+S+ ++LP GKK+LKQ+VKVFG LVKGLR+A+DLL+ + KEGHI+PSLS + K P
Sbjct: 655 ASVQSSALLLLPFFGKKLLKQRVKVFGLLVKGLRVAIDLLVQLQKEGHIMPSLSEVLKLP 714
Query: 689 IFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAI 748
+ GS G+DK LTQFEAAIDSDFP+Y+NHDVTD DAE LSILIELFIEK +QW +VIHAI
Sbjct: 715 MLSGSSGVDKLLTQFEAAIDSDFPNYENHDVTDSDAEILSILIELFIEKTTQWLQVIHAI 774
Query: 749 SCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGL 808
+ IDVLRSFAV A+ S GAM RP+ILP S+ + + GP+LKI+GLWHPFA+GENGGL
Sbjct: 775 NHIDVLRSFAVIANFSCGAMSRPVILPHSEPATLSGETRGPLLKIRGLWHPFAIGENGGL 834
Query: 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLA 868
PVPNDI LGED+D PRTLLLTGPNMGGKSTLLRATCLAVILAQLG +VPC+MC+LSL
Sbjct: 835 PVPNDIHLGEDTDGNHPRTLLLTGPNMGGKSTLLRATCLAVILAQLGSYVPCKMCILSLV 894
Query: 869 DTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
D +FTRLGATDRIMTGESTF +ECTETASVL+ ATQDSLV+LDELGRGTSTFDGYAIAYA
Sbjct: 895 DVVFTRLGATDRIMTGESTFFIECTETASVLRNATQDSLVLLDELGRGTSTFDGYAIAYA 954
Query: 929 VFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYR 988
VFR LVE++NCRLLFATHYHPLTKEFASHPHVTLQHMAC F E S G+QELVFLY+
Sbjct: 955 VFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELVFLYQ 1014
Query: 989 LTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWL 1048
LTSGACPESYGLQVA+MAGVP++VVEAAS A MK+SIGESF++SEQRSEFS+LHEEWL
Sbjct: 1015 LTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLHEEWL 1074
Query: 1049 KTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN 1085
K ++ VSR+ ++ DDDA+DTLFCLWHE+K+S Q N
Sbjct: 1075 KALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQSTN 1111
>gi|297738843|emb|CBI28088.3| unnamed protein product [Vitis vinifera]
Length = 1126
Score = 1519 bits (3933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/1121 (68%), Positives = 892/1121 (79%), Gaps = 42/1121 (3%)
Query: 1 MQRQQSIHSFFQKCSPANK----SGAADMSGARKDSNFTTKQRN---PVGDSSGQPTVSA 53
MQRQ+SI SFFQK SP ++ S AAD S R S F KQRN VGD QPT
Sbjct: 1 MQRQKSILSFFQKPSPEDQKCGGSSAADTSAGRSVSQFPAKQRNQNFAVGD---QPTFQI 57
Query: 54 TEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSS---IMHKFVKVDARQNAN 110
+ SS+EI GTDTPPEKVPRQ++P+ F AN+ SS S IMHKFVKVD R+++
Sbjct: 58 PKHSSMEITGTDTPPEKVPRQMIPASFTANDDRKAASSSSSLFSSIMHKFVKVDERESSC 117
Query: 111 KR--NEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEM- 167
+R E H SS CS D E ++G K++ FN NQ C +E
Sbjct: 118 ERYLKEMHSGSSNTCST-SVNSDCEVLPKEGNVFHSDAKESGFNSTKQVNQVCSLHSESG 176
Query: 168 NEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEE 227
++D+ GP+TPGM VPRLKRI EDN +K SLLDSSKR++LLQ+S G KN E
Sbjct: 177 DDDIIGPETPGMRPFVPRLKRIQEDNFE--NKNECSLLDSSKRLKLLQNSTTGNKNYGEV 234
Query: 228 ADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDV 287
+DTTSKFEWLDPS+ RDANRRRP D LYDKRTLYIPP+AL+KMSASQKQYW++K QYMDV
Sbjct: 235 SDTTSKFEWLDPSRKRDANRRRPGDALYDKRTLYIPPDALQKMSASQKQYWSIKCQYMDV 294
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347
+LFFKVGKFYELYELDAEIGHKELDWK+T SGVGKCRQVGISESGID+AV+KL+ARGYKV
Sbjct: 295 VLFFKVGKFYELYELDAEIGHKELDWKMTFSGVGKCRQVGISESGIDEAVQKLIARGYKV 354
Query: 348 GRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGS 407
GR+EQLETSEQAKAR + SVI RKLV+VVTPST DG IGPDAVHLL++KEGN +NGS
Sbjct: 355 GRMEQLETSEQAKARGSTSVIQRKLVHVVTPSTACDGNIGPDAVHLLSVKEGNNILENGS 414
Query: 408 VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS 467
V+YGFAFVDCAAL+ W+G+I+DDASCAALGALLMQVSPKEVIYEN+ L KEAQKAL+K+S
Sbjct: 415 VIYGFAFVDCAALKFWIGSISDDASCAALGALLMQVSPKEVIYENQELSKEAQKALKKYS 474
Query: 468 -AGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGG 526
+G AL+LTP TDF+DAS+V+ L+ L GYF GS + W AL+ VM HD+ ALGG
Sbjct: 475 LSGFTALKLTPLPLCTDFVDASKVRNLIHLKGYFKGSDNSWDHALDGVMHHDLALCALGG 534
Query: 527 LISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL----------------------YL 564
L+ HLSRL LDD LRNGDILPY+VY CLRMDGQTL YL
Sbjct: 535 LLGHLSRLKLDDTLRNGDILPYQVYSGCLRMDGQTLVNLEIFSNNADGGSSGKCTLYKYL 594
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
D+CVTSSGKRLLR+WICHPLKDV+GINNRL+VVE+LM N+E + +AQ LRKLPDLERLL
Sbjct: 595 DNCVTSSGKRLLRNWICHPLKDVQGINNRLNVVEHLMTNTETMSFIAQCLRKLPDLERLL 654
Query: 625 GRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRI 684
G+VKA VQ+S+ ++LP GKK+LKQ+VKVFG LVKGLR+A+DLL+ + KEGHI+PSLS +
Sbjct: 655 GQVKASVQSSALLLLPFFGKKLLKQRVKVFGLLVKGLRVAIDLLVQLQKEGHIMPSLSEV 714
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEV 744
K P+ GS G+DK LTQFEAAIDSDFP+Y+NHDVTD DAE LSILIELFIEK +QW +V
Sbjct: 715 LKLPMLSGSSGVDKLLTQFEAAIDSDFPNYENHDVTDSDAEILSILIELFIEKTTQWLQV 774
Query: 745 IHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
IHAI+ IDVLRSFAV A+ S GAM RP+ILP S+ + + GP+LKI+GLWHPFA+GE
Sbjct: 775 IHAINHIDVLRSFAVIANFSCGAMSRPVILPHSEPATLSGETRGPLLKIRGLWHPFAIGE 834
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
NGGLPVPNDI LGED+D PRTLLLTGPNMGGKSTLLRATCLAVILAQLG +VPC+MC+
Sbjct: 835 NGGLPVPNDIHLGEDTDGNHPRTLLLTGPNMGGKSTLLRATCLAVILAQLGSYVPCKMCI 894
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
LSL D +FTRLGATDRIMTGESTF +ECTETASVL+ ATQDSLV+LDELGRGTSTFDGYA
Sbjct: 895 LSLVDVVFTRLGATDRIMTGESTFFIECTETASVLRNATQDSLVLLDELGRGTSTFDGYA 954
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
IAYAVFR LVE++NCRLLFATHYHPLTKEFASHPHVTLQHMAC F E S G+QELV
Sbjct: 955 IAYAVFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELV 1014
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
FLY+LTSGACPESYGLQVA+MAGVP++VVEAAS A MK+SIGESF++SEQRSEFS+LH
Sbjct: 1015 FLYQLTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLH 1074
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN 1085
EEWLK ++ VSR+ ++ DDDA+DTLFCLWHE+K+S Q N
Sbjct: 1075 EEWLKALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQSTN 1115
>gi|449521080|ref|XP_004167559.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7-like
[Cucumis sativus]
Length = 1095
Score = 1449 bits (3751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 735/1112 (66%), Positives = 857/1112 (77%), Gaps = 59/1112 (5%)
Query: 1 MQRQQSIHSFFQKCSPANKS--GAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSS 58
MQRQ+S+ SFFQK N+S G A G R T Q P QP + T DSS
Sbjct: 1 MQRQKSLLSFFQKSPSDNRSSDGCASSVGQR----LTRFQTKPSAAGLEQPAIQTTADSS 56
Query: 59 LEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGN 118
LEIRGTDTPPEKVPRQILP K + GSSLFSSIMHKFV+VD ++ AN+R+E +
Sbjct: 57 LEIRGTDTPPEKVPRQILPVIEK-----NRGSSLFSSIMHKFVRVDDKRKANERDEVQKD 111
Query: 119 SST---------VCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNE 169
SS + S+ GK D S+ AS K +V N NG ++G V E NE
Sbjct: 112 SSQNEVGKDSPQLPSISGKVNDPTEFSKLDVASRRHGKFDVANLNG--HRGPVLNIESNE 169
Query: 170 DVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEAD 229
D++GP+TPGM V RLKR E +++ + SL DS KR++LLQDS+ K E +D
Sbjct: 170 DIAGPETPGMRPSVSRLKRSQE--VSLVNCSGDSLQDSKKRIKLLQDSINLNKIHNEISD 227
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
TSKFEWL+PS++RDANRRRPD PLYD +TLYIPP+ LKKMSASQKQYWNVK QYMD+LL
Sbjct: 228 ATSKFEWLNPSQVRDANRRRPDHPLYDXKTLYIPPDVLKKMSASQKQYWNVKCQYMDILL 287
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
FFKVGKFYELYE DAEIGHKELDWK+TLSGVGKCRQVG+ ESGID+AV+KLVARGYKVGR
Sbjct: 288 FFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVPESGIDEAVQKLVARGYKVGR 347
Query: 350 IEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVV 409
+EQLE++EQ K+R NSVI RKLV V TPST DG IGPDAVHLLAIKE +CG DN S+
Sbjct: 348 VEQLESAEQTKSRGANSVIPRKLVQVTTPSTKADGDIGPDAVHLLAIKEESCGLDNNSIS 407
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-A 468
YGFAFVDCAAL+ W G+I DDASCAALGALLMQVSPKE+IYE RGL KE K L+K+S
Sbjct: 408 YGFAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEARGLSKETHKVLKKYSPT 467
Query: 469 GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLI 528
GS ALELT VT+FL+ASEVK LVQ YF GS + W+ E+ + DI ALGGLI
Sbjct: 468 GSTALELTSGSPVTNFLEASEVKLLVQSKAYFKGSLNLWNH--ESTVHDDIALCALGGLI 525
Query: 529 SHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCV 568
+H+SRLMLDDVLRNGD+LPY+VYR CLRMDGQT+ YLD+CV
Sbjct: 526 NHMSRLMLDDVLRNGDLLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCV 585
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV-VMVVAQYLRKLPDLERLLGRV 627
TSSGKRLLR WICHPLKDVE INNRL+VVE LM S++ V++ YLRKLPDLERLLG++
Sbjct: 586 TSSGKRLLRLWICHPLKDVEEINNRLNVVEELMAQSDIMVLLGTTYLRKLPDLERLLGQI 645
Query: 628 KARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKP 687
KA VQ+S+ +VLPLI KK+ K++VK+FGSLVKGLR +DLL+ + KEG II SL ++ K
Sbjct: 646 KATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRTGLDLLIQVQKEGLII-SLPKVVKL 704
Query: 688 PIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHA 747
P G+ GLD+FLTQFEAA+DS+FPDYQNHDVTD AE LSILIELF+EKA++WSEVIHA
Sbjct: 705 PQLSGNGGLDQFLTQFEAAVDSEFPDYQNHDVTDSGAERLSILIELFVEKATEWSEVIHA 764
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++C+DVLRSFA+ A S G+M RPLILPQS N + + GPVLKI GLWHP+AL E+G
Sbjct: 765 LNCVDVLRSFAIIAHSSRGSMSRPLILPQSNNSMLSPEKQGPVLKINGLWHPYALVESGE 824
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
PVPND++LG D D PRTLLLTGPNMGGKSTLLR+TCLAV+LAQLGC+VPCE C LS+
Sbjct: 825 TPVPNDMILGLDQDSYHPRTLLLTGPNMGGKSTLLRSTCLAVVLAQLGCYVPCETCTLSV 884
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
DTIFTRLGATDRIMTGESTFLVEC+ETASVLQ ATQDSLVILDELGRGTSTFDGYAIAY
Sbjct: 885 VDTIFTRLGATDRIMTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAY 944
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AVFR L+E++NCRLLFATHYHPLTKEFASHPHV LQHMAC FK D EL+FLY
Sbjct: 945 AVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVMLQHMACTFK---------DHELIFLY 995
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEW 1047
RL SGACPESYGL+VA MAG+P +VVEAAS A+ MK++I E+FKSSEQRSEFS+LHEEW
Sbjct: 996 RLRSGACPESYGLKVATMAGIPGRVVEAASRASQMMKQTIKENFKSSEQRSEFSTLHEEW 1055
Query: 1048 LKTIVNVSRVDCNS-DDDDAYDTLFCLWHELK 1078
LKT++ V N+ D++DA+DTLFCLW+ELK
Sbjct: 1056 LKTLITVLEFKGNNLDENDAFDTLFCLWYELK 1087
>gi|449443325|ref|XP_004139430.1| PREDICTED: DNA mismatch repair protein MSH7-like [Cucumis sativus]
Length = 1095
Score = 1448 bits (3748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 735/1112 (66%), Positives = 858/1112 (77%), Gaps = 59/1112 (5%)
Query: 1 MQRQQSIHSFFQKCSPANKS--GAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSS 58
MQRQ+S+ SFFQK N+S G A G R T Q P QP + T DSS
Sbjct: 1 MQRQKSLLSFFQKSPSDNRSSDGCASSVGQR----LTRFQTKPSAAGLEQPAIQTTADSS 56
Query: 59 LEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGN 118
LEIRGTDTPPEKVPRQILP K + GSSLFSSIMHKFV+VD ++ AN+R+E +
Sbjct: 57 LEIRGTDTPPEKVPRQILPVIEK-----NRGSSLFSSIMHKFVRVDDKRKANERDEVQKD 111
Query: 119 SST---------VCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNE 169
SS + S+ GK D S+ AS K +V N NG ++G V E NE
Sbjct: 112 SSQNEVGKDSPQLPSISGKVNDPTEFSKLDVASRRHGKFDVANLNG--HRGPVLNIESNE 169
Query: 170 DVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEAD 229
D++GP+TPGM V RLKR E +++ + SL DS+KR++LLQDS+ K E +D
Sbjct: 170 DIAGPETPGMRPSVSRLKRSQE--VSLVNCSGDSLQDSTKRIKLLQDSINLNKIHNEISD 227
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
TSKFEWL+PS++RDANRRRPD PLYDK+TLYIPP+ LKKMSASQKQYWNVK QYMD+LL
Sbjct: 228 ATSKFEWLNPSQVRDANRRRPDHPLYDKKTLYIPPDVLKKMSASQKQYWNVKCQYMDILL 287
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
FFKVGKFYELYE DAEIGHKELDWK+TLSGVGKCRQVG+ ESGID+AV+KLVARGYKVGR
Sbjct: 288 FFKVGKFYELYEQDAEIGHKELDWKMTLSGVGKCRQVGVPESGIDEAVQKLVARGYKVGR 347
Query: 350 IEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVV 409
+EQLE++EQ K+R NSVI RKLV V TPST DG IGPDAVHLLAIKE +CG DN S+
Sbjct: 348 VEQLESAEQTKSRGANSVIPRKLVQVTTPSTKADGDIGPDAVHLLAIKEESCGLDNNSIS 407
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-A 468
YGFAFVDCAAL+ W G+I DDASCAALGALLMQVSPKE+IYE RGL KE K L+K+S
Sbjct: 408 YGFAFVDCAALKFWTGSIKDDASCAALGALLMQVSPKEIIYEARGLSKETHKVLKKYSPT 467
Query: 469 GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLI 528
GS ALELT VT+FL+ASEVK LVQ YF GS + W+ E+ + DI ALGGLI
Sbjct: 468 GSTALELTSGSPVTNFLEASEVKLLVQSKAYFKGSLNLWNH--ESTVHDDIALCALGGLI 525
Query: 529 SHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCV 568
+H+SRLMLDDVLRNGD+LPY+VYR CLRMDGQT+ YLD+CV
Sbjct: 526 NHMSRLMLDDVLRNGDLLPYQVYRGCLRMDGQTMVNLEIFRNNDDGGLSGTLYKYLDNCV 585
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV-VMVVAQYLRKLPDLERLLGRV 627
TSSGKRLLR WICHPLKDVE INNRL+VVE LM S++ V++ YLRKLPDLERLLG++
Sbjct: 586 TSSGKRLLRLWICHPLKDVEEINNRLNVVEELMAQSDIMVLLGTTYLRKLPDLERLLGQI 645
Query: 628 KARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKP 687
KA VQ+S+ +VLPLI KK+ K++VK+FGSLVKGLR +DLL+ + KEG II SL ++ K
Sbjct: 646 KATVQSSASLVLPLIRKKLQKRRVKLFGSLVKGLRTGLDLLIQVQKEGLII-SLPKVVKL 704
Query: 688 PIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHA 747
P G+ GLD+FLTQFEAA+DS+FPDYQNHDVTD AE LSILIELF+EKA++WSEVIHA
Sbjct: 705 PQLSGNGGLDQFLTQFEAAVDSEFPDYQNHDVTDSGAERLSILIELFVEKATEWSEVIHA 764
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++C+DVLRSFA+ A S G+M RPLILPQS N + + GPVLKI GLWHP+AL E+G
Sbjct: 765 LNCVDVLRSFAIIAHSSRGSMSRPLILPQSNNSMLSPEKQGPVLKINGLWHPYALVESGE 824
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
PVPND++LG D D PRTLLLTGPNMGGKSTLLR+TCLAV+LAQLGC+VPCE C LS+
Sbjct: 825 TPVPNDMILGLDQDSYHPRTLLLTGPNMGGKSTLLRSTCLAVVLAQLGCYVPCETCTLSV 884
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
DTIFTRLGATDRIMTGESTFLVEC+ETASVLQ ATQDSLVILDELGRGTSTFDGYAIAY
Sbjct: 885 VDTIFTRLGATDRIMTGESTFLVECSETASVLQHATQDSLVILDELGRGTSTFDGYAIAY 944
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AVFR L+E++NCRLLFATHYHPLTKEFASHPHV LQHMAC FK D EL+FLY
Sbjct: 945 AVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVMLQHMACTFK---------DHELIFLY 995
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEW 1047
RL SGACPESYGL+VA MAG+P +VVEAAS A+ MK++I E+FKSSEQRSEFS+LHEEW
Sbjct: 996 RLRSGACPESYGLKVATMAGIPGRVVEAASRASQMMKQTIKENFKSSEQRSEFSTLHEEW 1055
Query: 1048 LKTIVNVSRVDCNS-DDDDAYDTLFCLWHELK 1078
LKT++ V N+ ++DA+DTLFCLW+ELK
Sbjct: 1056 LKTLITVLEFKGNNLGENDAFDTLFCLWYELK 1087
>gi|147852830|emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]
Length = 1090
Score = 1415 bits (3663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/1129 (64%), Positives = 849/1129 (75%), Gaps = 94/1129 (8%)
Query: 1 MQRQQSIHSFFQKCSPANK----SGAADMSGARKDSNFTTKQRN---PVGDSSGQPTVSA 53
MQRQ+SI SFFQK SP ++ S AAD S R S F KQRN VGD QPT
Sbjct: 1 MQRQKSILSFFQKPSPEDQKCGGSSAADTSAGRSVSQFPAKQRNQNFAVGD---QPTFQI 57
Query: 54 TEDSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSS---IMHKFVKVDARQNAN 110
+ SS+EI GTDTPPEKVPRQ++P+ F AN+ SS S IMHKFVKVD R+++
Sbjct: 58 PKHSSMEITGTDTPPEKVPRQMIPASFTANDDRKAASSSSSLFSSIMHKFVKVDERESSC 117
Query: 111 KRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEM-NE 169
+R E H SS CS D E ++G K++ FN NQ C +E ++
Sbjct: 118 ERKEMHSGSSNTCST-SVNSDCEVLPKEGNVFHSDAKESGFNSTKQVNQVCSLHSESGDD 176
Query: 170 DVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEAD 229
D+ GP+TPGM VPRLKRI EDN +K SLLDSSKR++LLQ+S G KN E +D
Sbjct: 177 DIIGPETPGMRPFVPRLKRIQEDNFE--NKNECSLLDSSKRLKLLQNSTTGNKNYGEVSD 234
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
TTSKFEWLDPS+ RDANRRRP D LYDKRTLYIPP+AL+KMSASQKQYW++K QYMDV+L
Sbjct: 235 TTSKFEWLDPSRKRDANRRRPGDALYDKRTLYIPPDALQKMSASQKQYWSIKCQYMDVVL 294
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
FFKVGKFYELYELDAEIGHKELDWK+T SGVGKCRQVGISESGID+AV+KL+ARGYKVGR
Sbjct: 295 FFKVGKFYELYELDAEIGHKELDWKMTFSGVGKCRQVGISESGIDEAVQKLIARGYKVGR 354
Query: 350 IEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVV 409
+EQLETSEQAKAR + SVI RKLV+VVTPST DG IGPDAVHLL++KE
Sbjct: 355 MEQLETSEQAKARGSTSVIQRKLVHVVTPSTACDGNIGPDAVHLLSVKE----------- 403
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRG--------------- 454
VSPKEVIYEN+G
Sbjct: 404 ---------------------------------VSPKEVIYENQGILTFCFVQLNMLIIA 430
Query: 455 -LCKEAQKALRKFS-AGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALE 512
L KEAQKAL+K+S +G AL+LTP TDF+DAS+V+ L+ L GYF GS + W AL+
Sbjct: 431 ELSKEAQKALKKYSLSGFTALKLTPLPLCTDFVDASKVRNLIHLKGYFKGSDNSWDHALD 490
Query: 513 NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------- 562
VM HD+ ALGGL+ HLSRL LDD LRNGDILPY+VY CLRMDGQTL
Sbjct: 491 GVMHHDLALCALGGLLGHLSRLKLDDTLRNGDILPYQVYSGCLRMDGQTLVNLEIFSNNA 550
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
YLD+CVTSSGKRLLR+WICHPLKDV+GINNRL+VVE+LM +E + +AQ LRK
Sbjct: 551 DGTLYKYLDNCVTSSGKRLLRNWICHPLKDVQGINNRLNVVEHLMTXTETMSFIAQCLRK 610
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
LPDLERLLG+VKA VQ+S+ ++LP GKK+LKQ+VKVFG LVKGLR+A+ LL+ + KEGH
Sbjct: 611 LPDLERLLGQVKASVQSSALLLLPFFGKKLLKQRVKVFGLLVKGLRVAIXLLVXLQKEGH 670
Query: 677 IIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIE 736
I+PSLS + K P+ GS G+DK LTQFEAAIDSDFP+Y+NHDVTD DAE LSILIELFIE
Sbjct: 671 IMPSLSEVLKLPMLSGSSGVDKLLTQFEAAIDSDFPNYENHDVTDSDAEILSILIELFIE 730
Query: 737 KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
K +QW +VIHAI+ IDVLRSFAV A+ S GAM RP+ILP S+ + + GP+LKI GL
Sbjct: 731 KTTQWLQVIHAINHIDVLRSFAVIANFSCGAMSRPVILPHSEPATLSGETRGPLLKIXGL 790
Query: 797 WHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
WHPFA+GENGGLPVPNDI LGED+D PRTLLLTGPNMGGKSTLLRATCLAVILAQLG
Sbjct: 791 WHPFAIGENGGLPVPNDIHLGEDTDGNHPRTLLLTGPNMGGKSTLLRATCLAVILAQLGS 850
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VPC+MC+LSL D +FTRLGATDRIMTGESTF +ECTETASVL+ ATQDSLV+LDELGRG
Sbjct: 851 YVPCKMCILSLVDVVFTRLGATDRIMTGESTFFIECTETASVLRNATQDSLVLLDELGRG 910
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
TSTFDGYAIAYAVFR LVE++NCRLLFATHYHPLTKEFASHPHVTLQHMAC F E
Sbjct: 911 TSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKS 970
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQ 1036
S G+QELVFLY+LTSGACPESYGLQVA+MAG P++VVEAAS A MK+SIGESF++SEQ
Sbjct: 971 SGGEQELVFLYQLTSGACPESYGLQVALMAGXPKEVVEAASTAGRMMKQSIGESFRTSEQ 1030
Query: 1037 RSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLHN 1085
RSEFS+LHEEWLK ++ VSR+ ++ DDDA+DTLFCLWHE+K+S Q N
Sbjct: 1031 RSEFSTLHEEWLKALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQSTN 1079
>gi|30687514|ref|NP_850630.1| DNA mismatch repair protein Msh6-2 [Arabidopsis thaliana]
gi|12643849|sp|Q9SMV7.1|MSH7_ARATH RecName: Full=DNA mismatch repair protein MSH7; Short=AtMSH7;
AltName: Full=MutS protein homolog 7
gi|3757550|emb|CAA07685.1| Msh6-2 protein [Arabidopsis thaliana]
gi|9294039|dbj|BAB01996.1| DNA repair protein MutS [Arabidopsis thaliana]
gi|332643383|gb|AEE76904.1| DNA mismatch repair protein Msh6-2 [Arabidopsis thaliana]
Length = 1109
Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/1118 (62%), Positives = 859/1118 (76%), Gaps = 50/1118 (4%)
Query: 1 MQRQQSIHSFFQKCSPANKSG-----AADMSGARKDSNFTTKQRNPVGDSSGQPTVSATE 55
MQRQ+SI SFFQK + A G AA G F K+ + GD+S + VS +
Sbjct: 1 MQRQRSILSFFQKPTAATTKGLVSGDAASGGGGSGGPRFNVKEGDAKGDASVRFAVSKSV 60
Query: 56 DSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQ 115
D E+RGTDTPPEKVPR++LPSGFK E SSLFS+IMHKFVKVD R + +R+ +
Sbjct: 61 D---EVRGTDTPPEKVPRRVLPSGFKPAESAGDASSLFSNIMHKFVKVDDRDCSGERSRE 117
Query: 116 HG---NSSTVCSVFGKTGDL--EASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNED 170
N S++C K D+ + S G E+++ F+ +G A V ++ D
Sbjct: 118 DVVPLNDSSLCM---KANDVIPQFRSNNGKTQ---ERNHAFSFSGRAELRSVEDIGVDGD 171
Query: 171 VSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADT 230
V GP+TPGM RLKR+LED + + K +LDS+KR+++LQD V G K +E +
Sbjct: 172 VPGPETPGMRPRASRLKRVLEDEMTFKEDK-VPVLDSNKRLKMLQDPVCGEK---KEVNE 227
Query: 231 TSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLF 290
+KFEWL+ S+IRDANRRRPDDPLYD++TL+IPP+ KKMSASQKQYW+VKS+YMD++LF
Sbjct: 228 GTKFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLF 287
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
FKVGKFYELYELDAE+GHKELDWK+T+SGVGKCRQVGISESGID+AV+KL+ARGYKVGRI
Sbjct: 288 FKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRI 347
Query: 351 EQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVY 410
EQLETS+QAKAR N++I RKLV V+TPST +G IGPDAVHLLAIKE S VY
Sbjct: 348 EQLETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELQKCSTVY 407
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AG 469
GFAFVDCAALR WVG+I+DDASCAALGALLMQVSPKEV+Y+++GL +EAQKALRK++ G
Sbjct: 408 GFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTG 467
Query: 470 SAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS 529
S A++L P V DA+ V+ +++ NGYF GSS W+ A++ + + D+ SALG LI+
Sbjct: 468 STAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALGELIN 527
Query: 530 HLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVT 569
HLSRL L+DVL++GDI PY+VYR CLR+DGQT+ YLD+CV+
Sbjct: 528 HLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLDNCVS 587
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+GKRLLR+WICHPLKDVE IN RLDVVE NSE + + QYL KLPDLERLLGR+K+
Sbjct: 588 PTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLGRIKS 647
Query: 630 RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPI 689
V++S+ ++ L+GKKVLKQ+VK FG +VKG R +DLL+ + KE +++ L ++ K PI
Sbjct: 648 SVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLYKLCKLPI 707
Query: 690 FDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAIS 749
G GL+ FL+QFEAAIDSDFP+YQN DVTD +AETL+ILIELFIE+A+QWSEVIH IS
Sbjct: 708 LVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWSEVIHTIS 767
Query: 750 CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP 809
C+DVLRSFA+ AS+S+G+M RP+I P+S+ Q GP+LKI+GLWHPFA+ +G LP
Sbjct: 768 CLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLP 827
Query: 810 VPNDILLGE---DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDILLGE S PR+LLLTGPNMGGKSTLLRATCLAVI AQLGC+VPCE C +S
Sbjct: 828 VPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEIS 887
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
L DTIFTRLGA+DRIMTGESTFLVECTETASVLQ ATQDSLVILDELGRGTSTFDGYAIA
Sbjct: 888 LVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIA 947
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG-DQELVF 985
Y+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+ +G DQ+LVF
Sbjct: 948 YSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVF 1007
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
LYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RSEFSSLHE
Sbjct: 1008 LYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHE 1067
Query: 1046 EWLKTIVNVSRVDCNSD--DDDAYDTLFCLWHELKNSY 1081
+WLK++V +SRV N+ +D YDTLFCLWHE+K+SY
Sbjct: 1068 DWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
>gi|6224917|gb|AAF06013.1|AF193018_1 MutS homolog 7 [Arabidopsis thaliana]
Length = 1109
Score = 1396 bits (3614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/1118 (62%), Positives = 859/1118 (76%), Gaps = 50/1118 (4%)
Query: 1 MQRQQSIHSFFQKCSPANKSG-----AADMSGARKDSNFTTKQRNPVGDSSGQPTVSATE 55
MQRQ+SI SFFQK + A G AA G F K+ + GD+S + VS +
Sbjct: 1 MQRQRSILSFFQKPTAATTKGLVSGDAASGGGGSGGPRFNVKEGDAKGDASVRFAVSKSV 60
Query: 56 DSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQ 115
D E+RGTDTPPEKVPR++LPSGFK E SSLFS+IMHKFVKVD R + +R+ +
Sbjct: 61 D---EVRGTDTPPEKVPRRVLPSGFKPAESAGDASSLFSNIMHKFVKVDDRDCSGERSRE 117
Query: 116 HG---NSSTVCSVFGKTGDL--EASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNED 170
N S++C K D+ + S G E+++ F+ +G A V ++ D
Sbjct: 118 DVVPLNDSSLCM---KANDVIPQFRSNNGKTQ---ERNHAFSFSGRAELRSVEDIGVDGD 171
Query: 171 VSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADT 230
V GP+TPGM RLKR+LED + + K +LDS+KR+++LQD V G K +E +
Sbjct: 172 VPGPETPGMRPRASRLKRVLEDEMTFKEDK-VPVLDSNKRLKMLQDPVCGEK---KEVNE 227
Query: 231 TSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLF 290
+KFEWL+ S+IRDANRRRPDDPLYD++TL+IPP+ KKMSASQKQYW+VKS+YMD++LF
Sbjct: 228 GTKFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLF 287
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
FKVGKFYELYELDAE+GHKELDWK+T+SGVGKCRQVGISESGID+AV+KL+ARGYKVGRI
Sbjct: 288 FKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRI 347
Query: 351 EQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVY 410
EQLETS+QAKAR N++I RKLV V+TPST +G IGPDAVHLLAIKE S VY
Sbjct: 348 EQLETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELQKCSTVY 407
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AG 469
GFAFVDCAALR WVG+I+DDASCAALGALLMQVSPKEV+Y+++GL +EAQKALRK++ G
Sbjct: 408 GFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTG 467
Query: 470 SAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS 529
S A++L P V DA+ V+ +++ NGYF GSS W+ A++ + + D+ SALG LI+
Sbjct: 468 STAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALGELIN 527
Query: 530 HLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVT 569
HLSRL L+DVL++GDI PY+VYR CLR+DGQT+ YL++CV+
Sbjct: 528 HLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGVLQGPLNKYLENCVS 587
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+GKRLLR+WICHPLKDVE IN RLDVVE NSE + + QYL KLPDLERLLGR+K+
Sbjct: 588 PTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLGRIKS 647
Query: 630 RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPI 689
V++S+ ++ L+GKKVLKQ+VK FG +VKG R +DLL+ + KE +++ L ++ K PI
Sbjct: 648 SVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLYKLCKLPI 707
Query: 690 FDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAIS 749
G GL+ FL+QFEAAIDSDFP+YQN DVTD +AETL+ILIELFIE+A+QWSEVIH IS
Sbjct: 708 LVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWSEVIHTIS 767
Query: 750 CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP 809
C+DVLRSFA+ AS+S+G+M RP+I P+S+ Q GP+LKI+GLWHPFA+ +G LP
Sbjct: 768 CLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLP 827
Query: 810 VPNDILLGE---DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDILLGE S PR+LLLTGPNMGGKSTLLRATCLAVI AQLGC+VPCE C +S
Sbjct: 828 VPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEIS 887
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
L DTIFTRLGA+DRIMTGESTFLVECTETASVLQ ATQDSLVILDELGRGTSTFDGYAIA
Sbjct: 888 LVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIA 947
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG-DQELVF 985
Y+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+ +G DQ+LVF
Sbjct: 948 YSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVF 1007
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
LYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RSEFSSLHE
Sbjct: 1008 LYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHE 1067
Query: 1046 EWLKTIVNVSRVDCNSD--DDDAYDTLFCLWHELKNSY 1081
+WLK++V +SRV N+ +D YDTLFCLWHE+K+SY
Sbjct: 1068 DWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
>gi|297835538|ref|XP_002885651.1| hypothetical protein ARALYDRAFT_479958 [Arabidopsis lyrata subsp.
lyrata]
gi|297331491|gb|EFH61910.1| hypothetical protein ARALYDRAFT_479958 [Arabidopsis lyrata subsp.
lyrata]
Length = 1119
Score = 1395 bits (3612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/1132 (61%), Positives = 863/1132 (76%), Gaps = 68/1132 (6%)
Query: 1 MQRQQSIHSFFQKCSPANKSG--AADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSS 58
MQRQ+SI SFFQK SPA G + D + + N D+S + VS + D
Sbjct: 1 MQRQRSILSFFQKPSPATTQGLVSGDATSGGGGGVGGGLRLNVKDDASVRFAVSKSVD-- 58
Query: 59 LEIRGTDTPPEKVPRQILPSGFKANEGTSGG-SSLFSSIMHKFVKVDARQNANKRNEQHG 117
E+RGTDTPPEKVPR++LPSGFK E GG SSLFS+IMHKFVKVD R+ + +R+ +
Sbjct: 59 -EVRGTDTPPEKVPRRVLPSGFKTAESAGGGASSLFSNIMHKFVKVDDRECSGQRSREDV 117
Query: 118 ---NSSTVCSVFGKTGDL--EASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVS 172
N S+VC K D+ E S G E+D+ F+ +G +++DV
Sbjct: 118 VPLNDSSVCM---KADDVIPEFRSNNGQTQ---ERDHAFSFSGRVEDN----IGVDDDVP 167
Query: 173 GPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTS 232
GP+TPG+ V RLKR+LED + + + K +LDS+KR+++LQD V G K +E + +
Sbjct: 168 GPETPGIRPSVSRLKRVLEDGMTVKEDK-VPVLDSNKRLKMLQDPVCGEK---KEVNEGT 223
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KFEWL+PS+IRDANRRRPDDPLYD++TLYIPP+ KKMSASQKQYW+VKS+YMD++LFFK
Sbjct: 224 KFEWLEPSRIRDANRRRPDDPLYDRKTLYIPPDVFKKMSASQKQYWSVKSEYMDIVLFFK 283
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELYE+DAE+GHKELDWK+T+SGVGKCRQVGISESGID+AV+KL+ARGYKVGRIEQ
Sbjct: 284 VGKFYELYEVDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRIEQ 343
Query: 353 LETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGF 412
LETS+QAKAR N++I RKLV V+TPST +G IGPDAVHLLAIKE + S VYGF
Sbjct: 344 LETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELEKCSTVYGF 403
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AGSA 471
AFVDCAALR WVG+I+DDASCAALGALLMQVSPKEV+Y+++GL +EAQKALRK++ GS
Sbjct: 404 AFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVVYDSKGLSREAQKALRKYTLTGSM 463
Query: 472 ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL 531
A++L P V DA+ V+ +++ NGYF GSS W+ A++ + + D+ SALG LI+HL
Sbjct: 464 AVQLAPVSQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALGELINHL 523
Query: 532 SRLMLDDVLRNGDILPYKVYRDCLRMDGQTL----------------------------- 562
SRL L+DVL++GDI PY+VYR CLR+DGQT+
Sbjct: 524 SRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGKHRRKYSTTWYGS 583
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
YLD+CV+ +GKRLLR+WICHPLKDV IN RLDVVE NSE++ QY
Sbjct: 584 LVRTLYKYLDNCVSPTGKRLLRNWICHPLKDVVSINKRLDVVEEFTANSEIMQTTGQYFH 643
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEG 675
KLPDLERLLGR+K+ VQ+S+ ++ L+GKKVLKQ+VK FG VKG R +DLL+ + KE
Sbjct: 644 KLPDLERLLGRIKSSVQSSASVLPALLGKKVLKQRVKAFGQTVKGFRSGIDLLLALQKES 703
Query: 676 HIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFI 735
+++ L ++ K PI G++GL+ FL+QFEAAIDSDFP+YQN D+T+ +AETL+ILIELFI
Sbjct: 704 NMMSLLCKLCKLPILVGNNGLELFLSQFEAAIDSDFPNYQNQDMTEENAETLTILIELFI 763
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKG 795
E+ +QWSEVIH ISC+DVLRSFA+ AS+S+G+M RP+I P+S+N Q+ GP+LKI+G
Sbjct: 764 ERVTQWSEVIHTISCLDVLRSFAIAASLSAGSMARPVIFPESENTDQNQEIKGPILKIQG 823
Query: 796 LWHPFALGENGGLPVPNDILLGED---SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
LWHPFA+ +G LPVPNDILLGED S+ PR+LLLTGPNMGGKSTLLRATCLAVI A
Sbjct: 824 LWHPFAVAADGQLPVPNDILLGEDRNRSNSIHPRSLLLTGPNMGGKSTLLRATCLAVIFA 883
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
QLGC+VPCE C +SL DTIFTRLGA+DRIMTGESTFLVECTETASVLQ ATQDSLVILDE
Sbjct: 884 QLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDE 943
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTSTFDGYAIAY+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS
Sbjct: 944 LGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSK 1003
Query: 973 SENYSKG-DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESF 1031
S+ +G DQ+LVFLYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+F
Sbjct: 1004 SDQAPRGCDQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASDAAQAMKRSIGENF 1063
Query: 1032 KSSEQRSEFSSLHEEWLKTIVNVSRVDCNSD--DDDAYDTLFCLWHELKNSY 1081
KSSE RSEFSSLHE+WLK++V +SR N+ +D YDT+ CLWHE+++SY
Sbjct: 1064 KSSELRSEFSSLHEDWLKSLVGISRAAHNNAAIGEDDYDTMVCLWHEIRSSY 1115
>gi|356529614|ref|XP_003533384.1| PREDICTED: DNA mismatch repair protein Msh6-2-like [Glycine max]
Length = 1116
Score = 1375 bits (3560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 696/1086 (64%), Positives = 822/1086 (75%), Gaps = 75/1086 (6%)
Query: 60 EIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNS 119
++RGTDTPPEKVPR++LP+ F NE SG SLF SIMHKFVKVD + +R G S
Sbjct: 38 DVRGTDTPPEKVPRRVLPANFAPNENNSG-PSLFESIMHKFVKVDDNERVIQRLLNDGWS 96
Query: 120 STVCSVFGK-------------------------TGDLEASS-----------------Q 137
V ++ + G L SS +
Sbjct: 97 VRVSHIYREGNACVDALANLAYNMEVDVLMSHSLNGSLAKSSLPVGICADTDRKVVNMEE 156
Query: 138 QGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIG 197
L KDN N ANQ + E ++DV+GP+TPGM + LKR ED G
Sbjct: 157 TAFQPLGKVKDNAVNFKEKANQENFALVETDDDVTGPETPGMLPLASHLKRSREDGSKFG 216
Query: 198 DKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDK 257
SLL+S KR+R L DS+ + ++EA+ SKFEWL+PS+IRDAN RR +DPLYD+
Sbjct: 217 -----SLLNSGKRVRFLDDSLE-LDMTKKEAEVASKFEWLNPSRIRDANGRRSNDPLYDR 270
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
TLYIPPEAL KMSASQKQYW+VK +YMDVLLFFKVGKFYELYE+DA+IGHKELDWKITL
Sbjct: 271 TTLYIPPEALGKMSASQKQYWSVKCKYMDVLLFFKVGKFYELYEMDADIGHKELDWKITL 330
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVT 377
SGVGKCRQVGISESGIDDAV+KLVA GYKVGR+EQLETSE+AKAR NSVI RKLV VVT
Sbjct: 331 SGVGKCRQVGISESGIDDAVQKLVACGYKVGRVEQLETSEEAKARGANSVIRRKLVQVVT 390
Query: 378 PSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
PST VDG IGPDAVHLL+IKE N G DNG+VVYGFAFVDCA LR WVG+I+DDASC+ALG
Sbjct: 391 PSTNVDGNIGPDAVHLLSIKEENNGLDNGAVVYGFAFVDCARLRFWVGSIDDDASCSALG 450
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVTDFLDASEVKKLVQL 496
ALLMQVSP EVIY+NRGL KEAQKALRKFS GS AL+ TP ++TD + ++E++ L+
Sbjct: 451 ALLMQVSPTEVIYDNRGLSKEAQKALRKFSLNGSTALQFTPVQSMTDLV-SNEIRDLIHS 509
Query: 497 NGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
GYF GSS L +V+ +I SAL GLI HL RLML+D L+NGD+ Y+VYR CL+
Sbjct: 510 KGYFKGSSHSLDHVLRSVIHREITLSALVGLIDHLDRLMLNDALQNGDLYTYQVYRGCLK 569
Query: 557 MDGQTLY--------------------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
MDG T+ LD CVTSSGKRLLR+WIC PL D E INNRLD+
Sbjct: 570 MDGPTMINLELFVNNEDGGKSGSLYNCLDKCVTSSGKRLLRNWICCPLVDAEIINNRLDI 629
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGS 656
V+ LM N E+V +AQ+LR+LPDLE LLGR+K+ +Q S ++LP +GKK+LKQ+VKVFGS
Sbjct: 630 VDDLMANPEIVSHIAQHLRRLPDLEHLLGRIKSSLQLSGPLLLPFLGKKILKQRVKVFGS 689
Query: 657 LVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQN 716
LVKGLR A+ LL+L+ KE +I SL+++FK PI GS+GLD+FL QFEAA+DSDFP+YQN
Sbjct: 690 LVKGLRTALSLLLLLQKEQPLISSLTKVFKLPILTGSNGLDQFLAQFEAAVDSDFPNYQN 749
Query: 717 HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
H+VTD DAETL+IL ELF+EKA+QW EV+HAI+CIDVLRSFAVT++ S G M RP+I+
Sbjct: 750 HNVTDSDAETLTILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSTFSRGTMSRPVIVAS 809
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
+DNGG VLK+KGLWHPFALG++G LPVPND++LGE+ D PRTLLLTGPNMG
Sbjct: 810 K---GTSKDNGGTVLKMKGLWHPFALGDSGCLPVPNDVILGENEDGSHPRTLLLTGPNMG 866
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKSTLLR+TCLAVI+AQLGC+VPCE CVLS D IFTRLGA DRIMTGESTF VECTETA
Sbjct: 867 GKSTLLRSTCLAVIMAQLGCYVPCESCVLSAVDIIFTRLGAKDRIMTGESTFFVECTETA 926
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
VLQ ATQDSLVILDELGRGTSTFDGYAIAYAVFR L+E++NCR+LFATHYH LTKEFAS
Sbjct: 927 LVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRMLFATHYHSLTKEFAS 986
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
HP V +QHMACAFKS S+ +S DQELVFLYRL SG CPESYGLQVA+MAG+P+K V A
Sbjct: 987 HPRVIMQHMACAFKSKSDTHSMRDQELVFLYRLASGPCPESYGLQVALMAGIPEKTVNIA 1046
Query: 1017 SHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV-DCNSDDDDAYDTLFCLWH 1075
S A+ MKKSIG+SF+SSEQRSEFS+LHEEWLKT+V++SR+ DCNS D+DA DTL CLW+
Sbjct: 1047 SKASQQMKKSIGQSFRSSEQRSEFSTLHEEWLKTLVSISRIEDCNSLDEDALDTLICLWY 1106
Query: 1076 ELKNSY 1081
ELK S+
Sbjct: 1107 ELKTSF 1112
>gi|357500449|ref|XP_003620513.1| DNA mismatch repair protein Msh6-2 [Medicago truncatula]
gi|355495528|gb|AES76731.1| DNA mismatch repair protein Msh6-2 [Medicago truncatula]
Length = 1160
Score = 1347 bits (3487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/1173 (59%), Positives = 843/1173 (71%), Gaps = 101/1173 (8%)
Query: 1 MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLE 60
M RQ+SI SFF K SP N++ AA + A + Q NP D + +P V+ S +
Sbjct: 1 MIRQKSILSFFHKTSPENRTSAAAKTTAP-----SAPQSNP-EDRTIKPVVNPPPPSD-D 53
Query: 61 IRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHG--- 117
+RGTDTPPEKVPRQ+LP+ + AN S GS LF SIMHKF+KVD + N+R++
Sbjct: 54 VRGTDTPPEKVPRQVLPANYVANTKNS-GSCLFESIMHKFIKVDDGEKVNQRSQSSNPDS 112
Query: 118 --NSSTVCSVFGKTG--DLEASSQQGTASLYSEKDNVFNCN-GLANQGCVSCTEMNED-- 170
S ++F T L+ L KDN N +++ N D
Sbjct: 113 FPKPSPSSNIFTDTNRKGLQKEVAAAFEPLVKAKDNAVNFKEKVSHDNTFRSQSSNHDSF 172
Query: 171 ---------VSGPDTPGMHRVVPRLKRIL--EDN-LNIGDKKNSS--------------- 203
+ + G+ R + ++ +DN +N K NS
Sbjct: 173 PRPSPPSSIFTNTNRKGLQRDAAAFEPVVKAKDNAVNFKQKVNSGNTFLFENDDDITGPE 232
Query: 204 ------LLDSSKR-------MRLLQDSVAGVKNCEE---------EADTTSKFEWLDPSK 241
L + KR + L+DS V+ ++ E + SKFEWLDPS+
Sbjct: 233 TPGMQPLTSNVKRKVEDVSKLSSLRDSGKRVRFLDDSISLDMTKKELEIASKFEWLDPSR 292
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
IRDAN RRPDDPLYD+ TLYIPPE L+KM+ASQKQYW+VK +YMDVLLFFKVGKFYELYE
Sbjct: 293 IRDANGRRPDDPLYDRTTLYIPPEVLRKMTASQKQYWSVKCKYMDVLLFFKVGKFYELYE 352
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
+DAEIGHKELDWKITLSGVGKCRQVGISESGIDDAV+ LVARGYKVGR+EQLETSE+AKA
Sbjct: 353 MDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVKNLVARGYKVGRVEQLETSEEAKA 412
Query: 362 RHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALR 421
R NSVI RKLV VVTPST VDG IGPDA HLLAIKE + G DNGSV YGFAFVDCA LR
Sbjct: 413 RGANSVIQRKLVQVVTPSTNVDGNIGPDANHLLAIKEESNGSDNGSVTYGFAFVDCARLR 472
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSA-GSAALELTPAMA 480
+WVG+I+DDASC+ALGALLMQV K G+ KEA+KA RKFS GS L+LTP +
Sbjct: 473 LWVGSIDDDASCSALGALLMQVCSK--FPSLTGVSKEAEKAFRKFSLNGSTTLQLTPMRS 530
Query: 481 VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
+TD + SE+ L+ GYF GSS+ L NV+ +I SALGGLI HL+RLMLD+VL
Sbjct: 531 ITDLV-TSEISDLIHSKGYFKGSSNSLDHVLTNVIHCEITLSALGGLIGHLNRLMLDEVL 589
Query: 541 RNGDILPYKVYRDCLRMDGQTL---------------------------YLDSCVTSSGK 573
+NGDI PY+VY+ CL+MDG T YLD+CVTSSGK
Sbjct: 590 QNGDIYPYQVYKGCLKMDGPTYINLEIFGNSNDGGKAGKCLFYLSTLYKYLDNCVTSSGK 649
Query: 574 RLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQA 633
RLLR+WIC PLKD EGINNRLDVV++L+ + +V +AQ+LRKLPDLE LLGR K+ ++
Sbjct: 650 RLLRNWICCPLKDAEGINNRLDVVDHLIASPVIVSHIAQHLRKLPDLELLLGRTKSSLKV 709
Query: 634 SSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS 693
SS I+LPL+ KK+LKQ+VKVFGSLVKGLR + LL+++ KE +I SL+++FK P+ GS
Sbjct: 710 SSPILLPLLVKKILKQRVKVFGSLVKGLRTTLSLLLILQKEQPLISSLTKVFKLPVLTGS 769
Query: 694 DGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
DGLD+FLTQFEAA+DSDFP+YQNHDVTD DAETL+IL ELF+EKA+QW EV+HAI+CIDV
Sbjct: 770 DGLDQFLTQFEAAVDSDFPNYQNHDVTDTDAETLTILAELFLEKANQWFEVVHAINCIDV 829
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPND 813
LRSFAVT+S S G M RP+I+P SK + +D+G PVLK+KGLWHPFALGE G PVPND
Sbjct: 830 LRSFAVTSSFSCGTMSRPVIVPTSK--STSKDSGAPVLKMKGLWHPFALGETGREPVPND 887
Query: 814 ILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFT 873
++LGE+ PRTLLLTGPNMGGKSTLLRATCLAVI+AQLGC+VPCE CVLS+ D IFT
Sbjct: 888 MILGENEGGHHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVLSVVDIIFT 947
Query: 874 RLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL 933
RLGATDRIM GESTF +ECTETASVL ATQDSLVILDELGRGTSTFDGYAIAYAVFR L
Sbjct: 948 RLGATDRIMAGESTFFIECTETASVLHNATQDSLVILDELGRGTSTFDGYAIAYAVFRHL 1007
Query: 934 VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
+E++NCRLLFATHYHPLTKEFASHP VT+QHMACAFKS S+ SK DQELVFLYRL GA
Sbjct: 1008 IEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKQDQELVFLYRLAPGA 1067
Query: 994 CPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVN 1053
CPESYGLQVA+MAG+P+K V AS A+ MK SIG++F+SSEQRSEFSSLHEEWLKT+++
Sbjct: 1068 CPESYGLQVALMAGIPEKTVNVASKASQQMKISIGKNFRSSEQRSEFSSLHEEWLKTLMS 1127
Query: 1054 VSRV-DCNSDDDDAYDTLFCLWHELKNSYQLHN 1085
++R+ D S DDD DTL CL +ELK+S++ N
Sbjct: 1128 IARIEDVESFDDDVLDTLVCLRYELKSSFKSGN 1160
>gi|356522732|ref|XP_003530000.1| PREDICTED: DNA mismatch repair protein Msh6-2-like [Glycine max]
Length = 1079
Score = 1330 bits (3442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/1056 (65%), Positives = 817/1056 (77%), Gaps = 52/1056 (4%)
Query: 60 EIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNS 119
++RGTDTPPEKVPR++LP+ F NE SG SLF SIMHKFVKVD + +R+ S
Sbjct: 38 DVRGTDTPPEKVPRRVLPANFAPNEKESG-PSLFESIMHKFVKVDDNERVTQRSHSLNGS 96
Query: 120 ------------STVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEM 167
T C V K EA+ Q L KDN N ANQ + E
Sbjct: 97 LPKSSLPVGICADTDCKVVNKA---EAAFQ----PLVKVKDNAVNFKEKANQENIVVVET 149
Query: 168 NEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEE 227
+++V+GP+TPGM + +KR ED G SLL+S KR+R L S+ + ++E
Sbjct: 150 DDNVTGPETPGMLPLASHVKRSREDGSKFG-----SLLNSGKRVRFLDGSLE-LDMTKKE 203
Query: 228 ADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDV 287
A+ SKFEWLDPS+IRDAN RRPD+PLYD+ TLYIPPE L KMSASQKQYW+VK +YMDV
Sbjct: 204 AEVASKFEWLDPSRIRDANGRRPDNPLYDRTTLYIPPEVLGKMSASQKQYWSVKCKYMDV 263
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347
LLFFKVGKFYELYE+DA+IGHKELDWKITLSGVGKCRQVGISESGIDDAV KLVARGYKV
Sbjct: 264 LLFFKVGKFYELYEMDADIGHKELDWKITLSGVGKCRQVGISESGIDDAVLKLVARGYKV 323
Query: 348 GRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGS 407
GR+EQLETS +AK+R NSV+ RKLV V+TPST VDG IGPDAVHLLAIKE N DNG+
Sbjct: 324 GRVEQLETSGEAKSRGANSVVRRKLVQVLTPSTNVDGNIGPDAVHLLAIKEENNVLDNGA 383
Query: 408 VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS 467
VVYGFAFVDCA LR WVG+I+DDASC+ALGALL+QVSPKEVIY++RGL KEAQKALRKFS
Sbjct: 384 VVYGFAFVDCARLRFWVGSIDDDASCSALGALLVQVSPKEVIYDSRGLSKEAQKALRKFS 443
Query: 468 A-GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGG 526
GS L+ TP ++TD ++ +E++ L+ GYF GSS L NV+ +I SALG
Sbjct: 444 LNGSRTLQFTPVQSITDLVN-NEIRDLIHSKGYFKGSSHLLDHVLSNVIHREITLSALGR 502
Query: 527 LISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY--------------------LDS 566
LI HL RLMLDDVL+NGD+ PY+VY+ CL+MDG T+ LD
Sbjct: 503 LIGHLDRLMLDDVLQNGDLYPYQVYKGCLKMDGPTMINLELFFNNEDGGKSGSLYNCLDK 562
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
CVTSSGKRLLR+WIC PL D E IN RLDVV+ LM N E+V +AQ+LR+LPDLE LLGR
Sbjct: 563 CVTSSGKRLLRNWICCPLIDPEIINKRLDVVDDLMANPEIVPHIAQHLRRLPDLEHLLGR 622
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFK 686
+K+ +Q S ++LPL+GKK+LKQ+VKVFGSLV+GLR A+ LL+L+ KE +I SL+++FK
Sbjct: 623 IKSSLQLSGPLLLPLLGKKILKQRVKVFGSLVRGLRTALSLLLLLQKEQPLISSLTKVFK 682
Query: 687 PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIH 746
PI GS+GLD+FL QFEAA+DSDFP+YQNH+V D DAETL IL ELF+EKA+QW EV+H
Sbjct: 683 LPILTGSNGLDQFLAQFEAAVDSDFPNYQNHNVADSDAETLKILAELFLEKAAQWFEVVH 742
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+CIDVLRSFAVT++ S G M RP+I+ +DNG VLK+KGLWHPFALG++G
Sbjct: 743 AINCIDVLRSFAVTSTFSCGTMSRPVIVASK---GTSKDNGRTVLKMKGLWHPFALGDSG 799
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
LPVPND++LGE+ D PRTLLLTGPNMGGKSTLLR+TCLAVI+AQLGC+VPCE CVLS
Sbjct: 800 CLPVPNDVILGENEDGLYPRTLLLTGPNMGGKSTLLRSTCLAVIMAQLGCYVPCESCVLS 859
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IFTRLGA DRIMTGESTF +ECTETASVLQ ATQDSLVILDELGRGTSTFDGYAIA
Sbjct: 860 AVDIIFTRLGAKDRIMTGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIA 919
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
YAVFR L+E++NCR+LFATHYHPLTKEFASHP V +QHMACAF S S+ +S DQELVFL
Sbjct: 920 YAVFRHLIEKVNCRMLFATHYHPLTKEFASHPRVIMQHMACAFNSKSDTHSMRDQELVFL 979
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
YRL SG CPESYGLQVA+MAG+P+K V AS ++ MKKSIG+SF+SSEQRSEFS+LHEE
Sbjct: 980 YRLASGPCPESYGLQVALMAGIPEKTVNIASKSSQKMKKSIGQSFRSSEQRSEFSTLHEE 1039
Query: 1047 WLKTIVNVSRV-DCNSDDDDAYDTLFCLWHELKNSY 1081
WLKT+V++SR+ DCNS D+DA DTL LW+ELK S+
Sbjct: 1040 WLKTLVSISRIEDCNSLDEDALDTLISLWYELKTSF 1075
>gi|357136621|ref|XP_003569902.1| PREDICTED: DNA mismatch repair protein Msh6-2-like [Brachypodium
distachyon]
Length = 1232
Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/962 (58%), Positives = 703/962 (73%), Gaps = 40/962 (4%)
Query: 144 YSEKDNVFNCNGLANQGCVSC-TEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNS 202
+S+ +VF NG N + E++ P+ P V PR KR+ +D ++
Sbjct: 284 HSKHSSVF-MNGKHNGAPATLFPELDSFSLKPEMPMTRAVTPRAKRVQQDQCVTTKNQHP 342
Query: 203 SLLDSSKRMRLLQDSVAGVKNCEEEADTT-SKFEWLDPSKIRDANRRRPDDPLYDKRTLY 261
L S+K+++ S A +E A+ SKFEWL+P IRD N+RRP+DPLYDKRTL+
Sbjct: 343 PLWGSNKKVKSAHCSPAKKMVHDEMAEIARSKFEWLNPLNIRDGNKRRPEDPLYDKRTLF 402
Query: 262 IPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG 321
IPP+AL+KMS SQKQYW K +YMDV+LFFKVGKFYELYE+DAEIG KELDWK+T+SGVG
Sbjct: 403 IPPDALRKMSTSQKQYWTTKCKYMDVVLFFKVGKFYELYEVDAEIGQKELDWKMTISGVG 462
Query: 322 KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
KCRQVGISESGIDDAVEKL+ARGYKVGRIEQ+E++ QAKAR NS I RKLVNV TPST
Sbjct: 463 KCRQVGISESGIDDAVEKLLARGYKVGRIEQMESAVQAKARGPNSRIDRKLVNVSTPSTA 522
Query: 382 VDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
D IG DAVHLLA+KE NGS VYGFAF+D AAL++WVG+++DD S AALGALL+
Sbjct: 523 ADSNIGADAVHLLALKEVTLA-SNGSRVYGFAFLDYAALKIWVGSLHDDDSSAALGALLV 581
Query: 442 QVSPKEVIYENRGLCKEAQKALRKF-SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
QVSP+E+IYE+ GL +E+ K + K+ SAGS ++LTP ++ TDF D+S+++ V GYF
Sbjct: 582 QVSPREIIYESSGLSRESHKCMTKYASAGSVKMQLTP-LSRTDFSDSSQIRMSVHSKGYF 640
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ 560
S+ W AL+ M D ALGGLI HL+RLMLDD L+NG++LPYKVY+ CLRMDGQ
Sbjct: 641 KASTDSWLSALDYSMNQDAVICALGGLIGHLTRLMLDDALKNGEVLPYKVYQTCLRMDGQ 700
Query: 561 TL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
TL +L+ C+T+SGKRLLR WICHPLKDV+ IN+RLD+VE
Sbjct: 701 TLVNLEIFSNNFDGGSSGTLYKHLNHCITASGKRLLRRWICHPLKDVDAINSRLDIVEGF 760
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG 660
++N V + +YLRK+PDLERLLGRV++ V +S ++LP +G+++LK+++K FG L+KG
Sbjct: 761 IQNCGVGSITLEYLRKIPDLERLLGRVRSTVGLTSDVMLPFVGERMLKRRIKTFGMLIKG 820
Query: 661 LRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVT 720
LR+ +DLL ++ +E H I +LS+ P L + + QFE AID+DFP YQ+HD+
Sbjct: 821 LRVGIDLLSILQREDHGISALSKSVDIPTLSS---LGELIHQFEEAIDNDFPRYQDHDIK 877
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
D DA TL+IL+ELF+ KAS+WS VI+AIS IDVLRSF A S G M RP IL + K P
Sbjct: 878 DDDANTLAILVELFVGKASEWSFVINAISNIDVLRSFGAMALSSFGTMCRPQILLKDKVP 937
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
+L++KGLWHP+A E+ VPND+ LG+D LLLTGPNMGGKST
Sbjct: 938 ---------ILRMKGLWHPYAFAESTTGLVPNDLSLGQDLSGDNRFALLLTGPNMGGKST 988
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
++RATCLAV+LAQLGC+VPC C L+LAD+IFTRLGA DRIM+GESTFLVECTETASVLQ
Sbjct: 989 IMRATCLAVVLAQLGCYVPCTSCELTLADSIFTRLGAIDRIMSGESTFLVECTETASVLQ 1048
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT+DSLV+LDELGRGTSTFDGYAIAYAVFR LVER+ CRLLFATHY PLTKEFASHPHV
Sbjct: 1049 NATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVERVRCRLLFATHYRPLTKEFASHPHV 1108
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
LQHMAC + S S GD+E+ FLYRLT+GA PESYGLQVA MAG+P+ +VE AS A
Sbjct: 1109 ILQHMACMLRPKSG--SNGDKEITFLYRLTAGASPESYGLQVATMAGLPKSIVEKASVAG 1166
Query: 1021 LAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
MK + +FKSSE R+EFS++HEEWL+TI+ + V D+D DT+FC+ HELK
Sbjct: 1167 QMMKSKLTRNFKSSEGRAEFSTIHEEWLRTILAIGGVKDAHLDEDTMDTMFCISHELKAH 1226
Query: 1081 YQ 1082
++
Sbjct: 1227 FR 1228
>gi|20152859|gb|AAM13399.1| MutS homolog 7 [Triticum aestivum]
Length = 1160
Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/939 (58%), Positives = 698/939 (74%), Gaps = 38/939 (4%)
Query: 166 EMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCE 225
E++ + P+TP V PR KR+ +D + S L S+K+++ S G +
Sbjct: 234 ELDSVLLKPETPVTRAVAPRGKRVQQDQRMTANNSQSPLWGSNKKVKSAHCSPPGKMVHD 293
Query: 226 EEADTT-SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQY 284
E A++ SKFEWL+P IRDAN+RRPDDPLYDKRTL+IPP+AL+KMS SQKQYW++K +Y
Sbjct: 294 EMAESARSKFEWLNPLNIRDANKRRPDDPLYDKRTLFIPPDALRKMSTSQKQYWSIKCKY 353
Query: 285 MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
MDVLLFFKVGKFYELYE+DAEIG KELDWK+T+SGVGKCRQVGISESGIDDAVEKL+ARG
Sbjct: 354 MDVLLFFKVGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDDAVEKLLARG 413
Query: 345 YKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPD 404
YKVGRIEQ+E++ QAK+R NSVI RKL +V TPST D IGPDAVHLLA+KE
Sbjct: 414 YKVGRIEQMESAAQAKSRGPNSVIERKLAHVSTPSTAADSNIGPDAVHLLALKEVTLA-S 472
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
NGS +YGFAF+D AAL++WVG++ DD S AALGALL+QVSP+E+IYE+ GL +E++K++
Sbjct: 473 NGSRLYGFAFLDYAALKIWVGSLQDDDSSAALGALLVQVSPREIIYESSGLSRESRKSMI 532
Query: 465 KF-SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSA 523
K+ SAGS ++LTP + TDF DAS+++ LV GYF S+ W AL+ + D A
Sbjct: 533 KYASAGSVKMQLTP-LPGTDFSDASQIQMLVHSKGYFKASTDSWLSALDYSVNRDAVIFA 591
Query: 524 LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------Y 563
LGGLI HL+RLMLDD L+NG++LPY VY+ CLRMDGQTL +
Sbjct: 592 LGGLIGHLTRLMLDDALKNGEVLPYNVYQTCLRMDGQTLVNLEIFGNNFDGGSSGTLYKH 651
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L+ C+T+SGKRLLR WICHPLKDV+ IN RLDVVE +++ V + YLRK+PDLERL
Sbjct: 652 LNHCITASGKRLLRRWICHPLKDVDAINRRLDVVEGFIQHCGVGSITLYYLRKIPDLERL 711
Query: 624 LGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSR 683
LGR+++ V +S ++LP +G+K+LK+++K+FG L+KGLR+ +DLL + ++ H IP+LS+
Sbjct: 712 LGRIRSTVGLTSAVLLPFVGEKILKRRIKMFGMLIKGLRVGIDLLSALRRDDHGIPALSK 771
Query: 684 IFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSE 743
P LD+ + QFE I +DF YQ+HD+ D DA TL+ L+E F+ KA++WS
Sbjct: 772 SVDIPTLSS---LDELVHQFEEDIHNDFEQYQDHDIKDGDATTLANLVEHFVGKATEWSL 828
Query: 744 VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803
VI+AIS +DVLRSFA A S G M RP IL + K+P +L++KGLWHP+A
Sbjct: 829 VINAISTVDVLRSFAAMALSSFGTMCRPCILLKDKSP---------ILRMKGLWHPYAFA 879
Query: 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC 863
E+G VPND+ LG+D LLLTGPNMGGKST++RATCLA++LAQLGC+VPC C
Sbjct: 880 ESGTGLVPNDLSLGQDLSGHNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCISC 939
Query: 864 VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGY 923
L+LAD+IFTRLGATDRIM+GESTFLVEC+ETASVLQ AT+DSLV+LDELGRGTSTFDGY
Sbjct: 940 ELTLADSIFTRLGATDRIMSGESTFLVECSETASVLQNATEDSLVLLDELGRGTSTFDGY 999
Query: 924 AIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL 983
AIAYAVFR LVE++ CRLLFATHYHPLTKEFASHPHV+LQHMAC + S G+ EL
Sbjct: 1000 AIAYAVFRHLVEQVRCRLLFATHYHPLTKEFASHPHVSLQHMACMLRPRSGG--NGEMEL 1057
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSL 1043
FLYRL SGA PESYGLQVA MAG+P+ +VE A+ A MK I +F+SSE R+EFS+L
Sbjct: 1058 TFLYRLVSGASPESYGLQVATMAGIPKSIVEKAAVAGEMMKSRIAGNFRSSEGRAEFSTL 1117
Query: 1044 HEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
HE+WL+TI+ + V D+D DT+FC+ ELK+ ++
Sbjct: 1118 HEDWLQTILAIGGVKDAHLDEDTMDTMFCVAQELKSHFR 1156
>gi|115434900|ref|NP_001042208.1| Os01g0180600 [Oryza sativa Japonica Group]
gi|55296256|dbj|BAD68036.1| putative DNA mismatch repair protein [Oryza sativa Japonica Group]
gi|55296304|dbj|BAD68084.1| putative DNA mismatch repair protein [Oryza sativa Japonica Group]
gi|113531739|dbj|BAF04122.1| Os01g0180600 [Oryza sativa Japonica Group]
Length = 1224
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/931 (58%), Positives = 689/931 (74%), Gaps = 37/931 (3%)
Query: 174 PDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTT-S 232
P+TP M V+PRLKR+ ED + S +K+++ Q S K +E A++ S
Sbjct: 306 PETPVMRAVIPRLKRVQEDQRVTTNDSCSPFWGPNKKVKPAQCSPVENKVHDEMAESARS 365
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KFEWL+PS IRDANRRR DPLYDK TL+IPP+AL+KMS SQKQYWN+K +YMDV+LFFK
Sbjct: 366 KFEWLNPSNIRDANRRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNIKCKYMDVVLFFK 425
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELYE+DAEIG KELDWK+T+SGVGKCRQVGISESGID AVEKL+ARGYKVGRIEQ
Sbjct: 426 VGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDVAVEKLLARGYKVGRIEQ 485
Query: 353 LETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGF 412
+E+++QAK+R +NSVI RKLV+V TPST D IG DAVHLL++KE NGS VYGF
Sbjct: 486 MESADQAKSRGSNSVILRKLVHVSTPSTVGDSNIGADAVHLLSLKEITLA-SNGSRVYGF 544
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF-SAGSA 471
AF+D AAL++WVG+++DD + AALGALL+QVSPKE+IYE GL KE + ++K+ SAGS
Sbjct: 545 AFLDYAALKIWVGSVHDDDTFAALGALLVQVSPKEIIYETSGLSKETHRLIKKYASAGSV 604
Query: 472 ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL 531
++LTP + F D SE++ L+ GYF S+S W AL + + D ALGGL+SHL
Sbjct: 605 KMQLTPLYGLY-FSDVSEIQTLIDSRGYFKASTSSWLSALNSSVNKDAVICALGGLVSHL 663
Query: 532 SRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSS 571
+RLML+D L+NG++L Y VYR CLRMDGQTL +L+ C+T
Sbjct: 664 TRLMLEDALKNGEVLAYHVYRTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCITPC 723
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
GKRLLR WICHPLKD++ IN RLD+VE ++N + V ++LRK+PDLERLLGRVK+ V
Sbjct: 724 GKRLLRRWICHPLKDIDAINERLDIVEGFIQNCGLGSVTLEHLRKVPDLERLLGRVKSTV 783
Query: 632 QASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFD 691
SS ++LP +G+K+LK+++K FG LVKGLR+ +DLL ++ ++ H I +LS+ P
Sbjct: 784 GLSSAVLLPFVGEKILKRRIKTFGMLVKGLRVGIDLLDILQRQDHGISALSKAVDIPTLS 843
Query: 692 GSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCI 751
L + + FE AID DFP YQ+H V D DA TL++L++L + KAS+WS VI+A+S I
Sbjct: 844 S---LGELIHHFEEAIDDDFPRYQDHSVKDDDANTLAMLVDLLVGKASEWSLVINALSTI 900
Query: 752 DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVP 811
DVLRSFA A S G RP IL + K PVL++KGLWHP+A E+ VP
Sbjct: 901 DVLRSFAAMALSSFGTTCRPNILLKGK---------APVLQMKGLWHPYAFAESVNGLVP 951
Query: 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871
ND+ LG++ LLLTGPNMGGKST++RATCLA++LAQLGC+VPC+ C L+LAD I
Sbjct: 952 NDLSLGQNLSGQNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCQSCELTLADAI 1011
Query: 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931
FTR+GA DRIM+GESTFLVECTETAS+L+ AT+DSLV+LDELGRGTSTFDGYAIAYAVFR
Sbjct: 1012 FTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDELGRGTSTFDGYAIAYAVFR 1071
Query: 932 QLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTS 991
LVE + CRLLFATHYHPLTKEFASHPHVTLQHMAC K + G++EL FLYRLTS
Sbjct: 1072 HLVEAVRCRLLFATHYHPLTKEFASHPHVTLQHMACMLKPRNGG-DGGEKELTFLYRLTS 1130
Query: 992 GACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTI 1051
GACPESYGLQVA MAG+P+ +VE AS A M+ I +F+SSE+R+EFS+LHEEW++TI
Sbjct: 1131 GACPESYGLQVATMAGLPRSIVERASAAGEMMRSKIAGNFRSSEERAEFSTLHEEWVRTI 1190
Query: 1052 VNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
V + V D+D DTLFC++HELK ++
Sbjct: 1191 VAIGGVKDAHLDEDTMDTLFCVFHELKAHFR 1221
>gi|414876024|tpg|DAA53155.1| TPA: MUS2 protein [Zea mays]
Length = 1184
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/938 (58%), Positives = 680/938 (72%), Gaps = 38/938 (4%)
Query: 166 EMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCE 225
E++ P+TP M +PRLKR+ ED + + L +K+M+ S+ + E
Sbjct: 261 ELDSSPLKPETPAMQAAIPRLKRVQEDQGVDANNQCPPLWAMNKKMKSAHCSIEKKDHDE 320
Query: 226 EEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYM 285
SKFEWL+ IRDAN+RRP+DPLYDK TL+IPP+AL+KMS SQKQYWN+K +YM
Sbjct: 321 MAGSARSKFEWLNSFAIRDANKRRPNDPLYDKSTLFIPPDALRKMSTSQKQYWNIKCKYM 380
Query: 286 DVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345
DV+LFFKVGKFYELYELDAEIG KELDWK+T+SGVGKCRQVGISESGIDDAV+KL+ARGY
Sbjct: 381 DVVLFFKVGKFYELYELDAEIGQKELDWKMTVSGVGKCRQVGISESGIDDAVDKLIARGY 440
Query: 346 KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDN 405
KVGRIEQ+E++ QAKAR +SVI RKLV+V TPST VD IG DAVHLLA+KE +
Sbjct: 441 KVGRIEQMESANQAKARGVHSVIERKLVHVSTPSTAVD-NIGTDAVHLLALKEVTLA-SS 498
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
G V+GFAF+D AAL++WVG++ DD S AALGALLMQVSP+E+IYE G+ KE Q+ +RK
Sbjct: 499 GFQVFGFAFLDYAALKIWVGSVQDDDSSAALGALLMQVSPRELIYETSGISKETQRTIRK 558
Query: 466 F-SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
+ SAGS ++LTP + DF DA++++ L+ G+FN S+ W AL+ M D+ AL
Sbjct: 559 YASAGSVKMQLTPLSGI-DFSDAAQIRNLIHSKGFFNASTESWLSALDCTMNQDVVICAL 617
Query: 525 GGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YL 564
GGLI HL+RLML D L+NG++LPY VY+ CLRMDGQTL +L
Sbjct: 618 GGLIGHLTRLMLHDALKNGEVLPYHVYKTCLRMDGQTLVNLEIFSNNFNGGSSGTLYKHL 677
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
+ CVT+SGKR+LR WICHPLKD++ IN RLDVVE ++N + YL+K+PDLERLL
Sbjct: 678 NHCVTASGKRMLRRWICHPLKDIDAINKRLDVVEGFIQNCGLGPTTLGYLQKIPDLERLL 737
Query: 625 GRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRI 684
G+V++ V SS + LP IG+K++K+++K F L+ GLR +DLL + + H I +L +I
Sbjct: 738 GQVRSTVGLSSLLQLPFIGEKIIKKRIKTFIMLINGLRNGIDLLNDLQRADHGILALYKI 797
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEV 744
P L + + +FE + ++FP Q DV A L+ L+++FI KAS+WS V
Sbjct: 798 VDIPSLSY---LPELIHKFEERMQNEFPCGQVSDVNANGANDLAALMDVFIGKASEWSLV 854
Query: 745 IHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
I+A+S IDVLRSFA S GAM RP +L ++ D PVL++KGLWHP+A
Sbjct: 855 INAVSTIDVLRSFAAMTLSSFGAMCRPQVL-------LKDDV--PVLRMKGLWHPYAFAG 905
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
N VPND+ LG+D LLLTGPNMGGKST++RATCLAV+LAQLGC+VPC C
Sbjct: 906 NANSLVPNDLTLGQDLSGLNRFALLLTGPNMGGKSTIMRATCLAVVLAQLGCYVPCTSCE 965
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
L+LAD+IFTRLGATDRIMTGESTFLVECTETASVLQKAT DSLV+LDELGRGTSTFDGYA
Sbjct: 966 LTLADSIFTRLGATDRIMTGESTFLVECTETASVLQKATVDSLVLLDELGRGTSTFDGYA 1025
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
IAYAVFR LVER+ CR LFATHYH LTKEFASHPHV+LQHMAC FK S+ G +EL
Sbjct: 1026 IAYAVFRHLVERVRCRQLFATHYHSLTKEFASHPHVSLQHMACMFKPRSDG--NGQKELT 1083
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
FLYRLTSGACPESYGLQVA MAG+P+ +VE AS A M+ I +FKSSEQR+EFS+LH
Sbjct: 1084 FLYRLTSGACPESYGLQVAAMAGIPKSIVEKASVAGQVMRAKIAGNFKSSEQRAEFSTLH 1143
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
EEWL+ + VS +D DDDD DTLFC+ ELK+ ++
Sbjct: 1144 EEWLRAALAVSAMDGQPDDDDVMDTLFCIQQELKSHFR 1181
>gi|4775578|emb|CAB42555.1| MUS2 protein [Zea mays]
Length = 1184
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/938 (58%), Positives = 680/938 (72%), Gaps = 38/938 (4%)
Query: 166 EMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCE 225
E++ P+TP M +PRLKR+ ED + + L +K+M+ S+ + E
Sbjct: 261 ELDSSPLKPETPAMQAAIPRLKRVQEDQGVDANNQCPPLWAMNKKMKSAHCSIEKKDHDE 320
Query: 226 EEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYM 285
SKFEWL+ IRDAN+RRP+DPLYDK TL+IPP+AL+KMS SQKQYWN+K +YM
Sbjct: 321 MAGSARSKFEWLNSFAIRDANKRRPNDPLYDKSTLFIPPDALRKMSTSQKQYWNIKCKYM 380
Query: 286 DVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345
DV+LFFKVGKFYELYELDAEIG KELDWK+T+SGVGKCRQVGISESGIDDAV+KL+ARGY
Sbjct: 381 DVVLFFKVGKFYELYELDAEIGQKELDWKMTVSGVGKCRQVGISESGIDDAVDKLIARGY 440
Query: 346 KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDN 405
KVGRIEQ+E++ QAKAR +SVI RKLV+V TPST VD IG DAVHLLA+KE +
Sbjct: 441 KVGRIEQMESANQAKARGVHSVIERKLVHVSTPSTAVD-NIGTDAVHLLALKEVTLA-SS 498
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
G V+GFAF+D AAL++WVG++ DD S AALGALLMQVSP+E+IYE G+ KE Q+ +RK
Sbjct: 499 GFQVFGFAFLDYAALKIWVGSVQDDDSSAALGALLMQVSPRELIYETSGISKETQRTIRK 558
Query: 466 F-SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
+ SAGS ++LTP + DF DA++++ L+ G+FN S+ W AL+ M D+ AL
Sbjct: 559 YASAGSVKMQLTPLSGI-DFSDAAQIRNLIHSKGFFNASTESWLSALDCTMNQDVVICAL 617
Query: 525 GGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YL 564
GGLI HL+RLML D L+NG++LPY VY+ CLRMDGQTL +L
Sbjct: 618 GGLIGHLTRLMLHDALKNGEVLPYHVYKTCLRMDGQTLVNLEIFINNFNGGSSGTLYKHL 677
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
+ CVT+SGKR+LR WICHPLKD++ IN RLDVVE ++N + YL+K+PDLERLL
Sbjct: 678 NHCVTASGKRMLRRWICHPLKDIDAINKRLDVVEGFIQNCGLGPTTLGYLQKIPDLERLL 737
Query: 625 GRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRI 684
G+V++ V SS + LP IG+K++K+++K F L+ GLR +DLL + + H I +L +I
Sbjct: 738 GQVRSTVGLSSLLQLPFIGEKIIKKRIKTFIMLINGLRNGIDLLNDLQRADHGILALYKI 797
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEV 744
P L + + +FE + ++FP Q DV A L+ L+++FI KAS+WS V
Sbjct: 798 VDIPSLSY---LPELIHKFEERMQNEFPCGQVSDVNANGANDLAALMDVFIGKASEWSLV 854
Query: 745 IHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
I+A+S IDVLRSFA S GAM RP +L ++ D PVL++KGLWHP+A
Sbjct: 855 INAVSTIDVLRSFAAMTLSSFGAMCRPQVL-------LKDDV--PVLRMKGLWHPYAFAG 905
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
N VPND+ LG+D LLLTGPNMGGKST++RATCLAV+LAQLGC+VPC C
Sbjct: 906 NANSLVPNDLTLGQDLSGLNRFALLLTGPNMGGKSTIMRATCLAVVLAQLGCYVPCTSCE 965
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
L+LAD+IFTRLGATDRIMTGESTFLVECTETASVLQKAT DSLV+LDELGRGTSTFDGYA
Sbjct: 966 LTLADSIFTRLGATDRIMTGESTFLVECTETASVLQKATVDSLVLLDELGRGTSTFDGYA 1025
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
IAYAVFR LVER+ CR LFATHYH LTKEFASHPHV+LQHMAC FK S+ G +EL
Sbjct: 1026 IAYAVFRHLVERVRCRQLFATHYHSLTKEFASHPHVSLQHMACMFKPRSDG--NGQKELT 1083
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
FLYRLTSGACPESYGLQVA MAG+P+ +VE AS A M+ I +FKSSEQR+EFS+LH
Sbjct: 1084 FLYRLTSGACPESYGLQVAAMAGIPKSIVEKASVAGQVMRAKIAGNFKSSEQRAEFSTLH 1143
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
EEWL+ + VS +D DDDD DTLFC+ ELK+ ++
Sbjct: 1144 EEWLRAALAVSAMDGQPDDDDVMDTLFCIQQELKSHFR 1181
>gi|218187626|gb|EEC70053.1| hypothetical protein OsI_00652 [Oryza sativa Indica Group]
Length = 1216
Score = 1083 bits (2801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/931 (58%), Positives = 681/931 (73%), Gaps = 45/931 (4%)
Query: 174 PDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTT-S 232
P+TP M V+PRLKR+ ED + S +K+++ Q S K +E A++ S
Sbjct: 306 PETPVMRAVIPRLKRVQEDQRVTTNDSCSPFWGPNKKVKPAQCSPVENKVHDEMAESARS 365
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KFEWL+PS IRDANRRR DPLYDK TL+IPP+AL+KMS SQKQYWN+K +YMDV+LFFK
Sbjct: 366 KFEWLNPSNIRDANRRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNIKCKYMDVVLFFK 425
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELYE+DAEIG KELDWK+T+SGVGKCRQVGISESGID AVEKL+ARGYKVGRIEQ
Sbjct: 426 VGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDVAVEKLLARGYKVGRIEQ 485
Query: 353 LETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGF 412
+E+++QAK+R +NSVI RKLV+V TPST D IG DAVHLL++KE NGS VYGF
Sbjct: 486 MESADQAKSRGSNSVILRKLVHVSTPSTVGDSNIGADAVHLLSLKEITLA-SNGSRVYGF 544
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF-SAGSA 471
AF+D AAL++WVG+++DD + AALGALL+QVSPKE+IYE GL KE + ++K+ SAGS
Sbjct: 545 AFLDYAALKIWVGSVHDDDTFAALGALLVQVSPKEIIYETSGLSKETHRLIKKYASAGSV 604
Query: 472 ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL 531
++LTP + F D SE++ L+ GYF S+S W AL + + D ALGGL
Sbjct: 605 KMQLTPLYGLY-FSDVSEIQTLIDSRGYFKASTSSWLSALNSSVNKDAVICALGGL---- 659
Query: 532 SRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSS 571
L+D L+NG++L Y VYR CLRMDGQTL +L+ C+T
Sbjct: 660 ----LEDALKNGEVLAYHVYRTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCITPC 715
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
GKRLLR WICHPLKD++ IN RLD+VE ++N + V ++LRK+PDLERLLGRVK+ V
Sbjct: 716 GKRLLRRWICHPLKDIDAINERLDIVEGFIQNCGLGSVTLEHLRKVPDLERLLGRVKSTV 775
Query: 632 QASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFD 691
SS ++LP +G+K+LK+++K FG LVKGLR+ +DLL ++ ++ H I +LS+ P
Sbjct: 776 GLSSAVLLPFVGEKILKRRIKTFGMLVKGLRVGIDLLDILQRQDHGISALSKAVDIPTLS 835
Query: 692 GSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCI 751
L + + FE AID DFP YQ+H V D DA TL++L++L + KAS+WS VI+A+S I
Sbjct: 836 S---LGELIHHFEEAIDDDFPRYQDHSVKDDDANTLAMLVDLLVGKASEWSLVINALSTI 892
Query: 752 DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVP 811
DVLRSFA A S G RP IL + K PVL++KGLWHP+A E+ VP
Sbjct: 893 DVLRSFAAMALSSFGTTCRPNILLKGK---------APVLQMKGLWHPYAFAESVNGLVP 943
Query: 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871
ND+ LG+D LLLTGPNMGGKST++RATCLA++LAQLGC+VPC+ C L+LAD I
Sbjct: 944 NDLSLGQDLSGQNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCQSCELTLADAI 1003
Query: 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931
FTR+GA DRIM+GESTFLVECTETAS+L+ AT+DSLV+LDELGRGTSTFDGYAIAYAVFR
Sbjct: 1004 FTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDELGRGTSTFDGYAIAYAVFR 1063
Query: 932 QLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTS 991
LVE + CRLLFATHYHPLTKEFASHPHVTLQHMAC K + G++EL FLYRLTS
Sbjct: 1064 HLVEAVRCRLLFATHYHPLTKEFASHPHVTLQHMACMLKPRNGG-DGGEKELTFLYRLTS 1122
Query: 992 GACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTI 1051
GACPESYGLQVA MAG+P+ +VE AS A M+ I +F+SSE+R+EFS+LHEEW++TI
Sbjct: 1123 GACPESYGLQVATMAGLPRSIVERASAAGEMMRSKIAGNFRSSEERAEFSTLHEEWVRTI 1182
Query: 1052 VNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
V + V D+D DTLFC++HELK ++
Sbjct: 1183 VAIGGVKDAHLDEDTMDTLFCVFHELKAHFR 1213
>gi|242051827|ref|XP_002455059.1| hypothetical protein SORBIDRAFT_03g003700 [Sorghum bicolor]
gi|241927034|gb|EES00179.1| hypothetical protein SORBIDRAFT_03g003700 [Sorghum bicolor]
Length = 1035
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/955 (57%), Positives = 683/955 (71%), Gaps = 55/955 (5%)
Query: 164 CTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKN 223
C+ ++ P+TP M V+PRLKR+ ED + + L +K+M+ S+ K+
Sbjct: 88 CSGLDSSPLKPETPAMQPVIPRLKRVQEDQSVDANNQCPPLGALNKKMKSAHCSIER-KD 146
Query: 224 CEEEADTT-SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKS 282
+E AD+ SKFEWL+P IRDANRRRP+DPLYDK TL+IPP+AL+KMS SQKQYWN+K
Sbjct: 147 HDEMADSARSKFEWLNPFAIRDANRRRPNDPLYDKSTLFIPPDALRKMSTSQKQYWNIKC 206
Query: 283 QYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVA 342
+YMDV+LFFKVGKFYELYELDAEIG KE DWK+T +GVGKCRQVGISESGIDDAV+KLVA
Sbjct: 207 KYMDVVLFFKVGKFYELYELDAEIGQKEFDWKMTANGVGKCRQVGISESGIDDAVDKLVA 266
Query: 343 RGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCG 402
RGYKVGRIEQ+E++ QAKAR +SVI RKLV+V TPST D IG DAVHLLA+KE
Sbjct: 267 RGYKVGRIEQMESANQAKARGLHSVIERKLVHVSTPSTAAD-NIGTDAVHLLALKEVTLA 325
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+ S VYGFAF+D AAL++WVG++ DD S AALGALLMQVSP+E+IYE G+ KE Q+
Sbjct: 326 -SSSSQVYGFAFLDYAALKIWVGSVQDDDSSAALGALLMQVSPRELIYETSGITKETQRT 384
Query: 463 LRKF-SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGF 521
+RK+ SAGS ++LTP + DF DAS+++ L+ G+FN S+ W AL+ + D+
Sbjct: 385 IRKYASAGSVKMQLTPLSGI-DFSDASQIRMLIHSKGFFNASTESWLSALDCAVNRDVVI 443
Query: 522 SALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------------------- 562
ALGGLI HL+RLML D L+NG++LPY VY+ CLRMDGQTL
Sbjct: 444 CALGGLIGHLTRLMLHDALKNGEVLPYHVYKTCLRMDGQTLVNLEIFSNNFNGGSSGTLY 503
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLE 621
+L+ CVT+SGKRLLR WICHPLKD++ IN RLDVVE ++N + YLRK+PDLE
Sbjct: 504 KHLNHCVTASGKRLLRRWICHPLKDIDAINKRLDVVEGFIQNCGLGPTTLGYLRKIPDLE 563
Query: 622 RLLGRVKARVQASSCIVLPLIGKKVLKQ--------------QVKVFGSLVKGLRIAMDL 667
RLLG+V++ V SS + LP IG+K+LK+ Q+K F L+ GLR +DL
Sbjct: 564 RLLGQVRSTVGLSSLLQLPFIGEKILKRRFFFLSVDCFMACSQIKTFTMLINGLRNGIDL 623
Query: 668 LMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETL 727
L + + H + +L +I + P + L + + FE I +DFP Q+ DV + A L
Sbjct: 624 LSDLQRADHGVLALYKIVEIPSLNC---LCELIHTFEERIQNDFPCGQDPDVDNNGANNL 680
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
L+ELFI KAS+WS VI+A+S IDVLRSFA S GAM RP +L + +
Sbjct: 681 VRLVELFIGKASEWSLVINAVSTIDVLRSFAAMTLSSFGAMCRPQVLLK---------DD 731
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
P+L++KGLWHP+A EN VPND+ LG+D LLLTGPNMGGKST++RATCL
Sbjct: 732 VPILRMKGLWHPYAFAENANGLVPNDLTLGQDLSGLNRFALLLTGPNMGGKSTIMRATCL 791
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AV+LAQLGC+VPC C L+LAD+IFTRLGATDRIM+GESTFLVECTETASVLQ AT DSL
Sbjct: 792 AVVLAQLGCYVPCTSCELTLADSIFTRLGATDRIMSGESTFLVECTETASVLQNATVDSL 851
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGTSTFDGYAIAYAVFR LVER+ CR LFATHYH LTKEFASHPHV+LQHMAC
Sbjct: 852 VLLDELGRGTSTFDGYAIAYAVFRHLVERVRCRQLFATHYHSLTKEFASHPHVSLQHMAC 911
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
FK S+ G +EL FLYRLTSGACPESYGLQVA MAG+P+ +VE AS A M+ I
Sbjct: 912 MFKPRSDG--NGQKELTFLYRLTSGACPESYGLQVATMAGIPKSIVENASVAGQVMRSKI 969
Query: 1028 GESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
E+F+SSEQR+EFS+LHEE L+ + VS D DDD DTL C+ ELK+ ++
Sbjct: 970 AENFRSSEQRAEFSTLHEERLREALAVSVQD-GLLDDDIMDTLICVRQELKSHFR 1023
>gi|4775580|emb|CAB42556.1| MUS2 protein [Zea mays]
Length = 877
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/879 (60%), Positives = 651/879 (74%), Gaps = 38/879 (4%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQY 284
E SKFEWL+ IRDAN+RRP+DPLYDK TL+IPP+AL+KMS SQKQYWN+K +Y
Sbjct: 13 EMAGSARSKFEWLNSFAIRDANKRRPNDPLYDKSTLFIPPDALRKMSTSQKQYWNIKCKY 72
Query: 285 MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
MDV+LFFKVGKFYELYELDAEIG KELDWK+T+SGVGKCRQVGISESGIDDAV+KL+ARG
Sbjct: 73 MDVVLFFKVGKFYELYELDAEIGQKELDWKMTVSGVGKCRQVGISESGIDDAVDKLIARG 132
Query: 345 YKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPD 404
YKVGRIEQ+E++ QAKAR +SVI RKLV+V TPST VD IG DAVHLLA+KE
Sbjct: 133 YKVGRIEQMESANQAKARGVHSVIERKLVHVSTPSTAVD-NIGTDAVHLLALKEVTLA-S 190
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V+GFAF+D AAL++WVG++ DD S AALGALLMQVSP+E+IYE G+ KE Q+ +R
Sbjct: 191 SGFQVFGFAFLDYAALKIWVGSVQDDDSSAALGALLMQVSPRELIYETSGISKETQRTIR 250
Query: 465 KF-SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSA 523
K+ SAGS ++LTP + DF DA++++ L+ G+FN S+ W AL+ M D+ A
Sbjct: 251 KYASAGSVKMQLTPLSGI-DFSDAAQIRNLIHSKGFFNASTESWLSALDCTMNQDVVICA 309
Query: 524 LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------Y 563
LGGLI HL+RLML D L+NG++LPY VY+ CLRMDGQTL +
Sbjct: 310 LGGLIGHLTRLMLHDALKNGEVLPYHVYKTCLRMDGQTLVNLEIFINNFNGGSSGTLYKH 369
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L+ CVT+SGKR+LR WICHPLKD++ IN RLDVVE ++N + YL+K+PDLERL
Sbjct: 370 LNHCVTASGKRMLRRWICHPLKDIDAINKRLDVVEGFIQNCGLGPTTLGYLQKIPDLERL 429
Query: 624 LGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSR 683
LG+V++ V SS + LP IG+K++K+++K F L+ GLR +DLL + + H I +L +
Sbjct: 430 LGQVRSTVGLSSLLQLPFIGEKIIKKRIKTFIMLINGLRNGIDLLNDLQRADHGILALYK 489
Query: 684 IFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSE 743
I P L + + +FE + ++FP Q DV A L+ L+++FI KAS+WS
Sbjct: 490 IVDIPSLSY---LPELIHKFEERMQNEFPCGQVSDVNANGANDLAALMDVFIGKASEWSL 546
Query: 744 VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803
VI+A+S IDVLRSFA S GAM RP +L + + PVL++KGLWHP+A
Sbjct: 547 VINAVSTIDVLRSFAAMTLSSFGAMCRPQVLLK---------DDVPVLRMKGLWHPYAFA 597
Query: 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC 863
N VPND+ LG+D LLLTGPNMGGKST++RATCLAV+LAQLGC+VPC C
Sbjct: 598 GNANSLVPNDLTLGQDLSGLNRFALLLTGPNMGGKSTIMRATCLAVVLAQLGCYVPCTSC 657
Query: 864 VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGY 923
L+LAD+IFTRLGATDRIMTGESTFLVECTETASVLQKAT DSLV+LDELGRGTSTFDGY
Sbjct: 658 ELTLADSIFTRLGATDRIMTGESTFLVECTETASVLQKATVDSLVLLDELGRGTSTFDGY 717
Query: 924 AIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL 983
AIAYAVFR LVER+ CR LFATHYH LTKEFASHPHV+LQHMAC FK S+ G +EL
Sbjct: 718 AIAYAVFRHLVERVRCRQLFATHYHSLTKEFASHPHVSLQHMACMFKPRSDG--NGQKEL 775
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSL 1043
FLYRLTSGACPESYGLQVA MAG+P+ +VE AS A M+ I +FKSSEQR+EFS+L
Sbjct: 776 TFLYRLTSGACPESYGLQVAAMAGIPKSIVEKASVAGQVMRAKIAGNFKSSEQRAEFSTL 835
Query: 1044 HEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
HEEWL+ + VS +D DDDD DTLFC+ ELK+ ++
Sbjct: 836 HEEWLRAALAVSAMDGQPDDDDVMDTLFCIQQELKSHFR 874
>gi|296034483|gb|ADG85113.1| mismatch repair protein [Solanum lycopersicum]
Length = 782
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/759 (67%), Positives = 609/759 (80%), Gaps = 25/759 (3%)
Query: 321 GKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
GKCRQVGISESGID+AV+KL+ARGYKVGR+EQLETSEQAK+R + SVI RKLV+V+TPST
Sbjct: 5 GKCRQVGISESGIDEAVQKLLARGYKVGRMEQLETSEQAKSRGSTSVIRRKLVHVLTPST 64
Query: 381 TVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
T +G IGPDAVHLLA+KE NGS GFAFVDCAAL+VWVG++ DDASCAAL ALL
Sbjct: 65 TSEGNIGPDAVHLLAVKETCKELGNGSTTIGFAFVDCAALKVWVGSVEDDASCAALEALL 124
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
MQVSPKEVI+ RGL K+AQKAL+K+S+ G AA L+P DF+D +EVK + L GY
Sbjct: 125 MQVSPKEVIFNARGLSKDAQKALKKYSSTGPAAPLLSPVQPGADFVDPAEVKNFLDLKGY 184
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG 559
F S + W A + HD+ ALG L++HL RLML++VL NGDIL Y+VY+ CL+MDG
Sbjct: 185 FKRSCNKWDHAFDG-EDHDVALCALGSLVNHLERLMLNEVLHNGDILSYEVYKGCLKMDG 243
Query: 560 QTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
QTL YLD+CVT GKRLLR WICHPLKDVE IN+RLDVV+
Sbjct: 244 QTLVNLEIFNNNVDGSPSGTLYRYLDNCVTLPGKRLLRKWICHPLKDVEKINHRLDVVDK 303
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
L+ N+ + AQYLRKLPDL+RLLGRVKA +Q+S ++LPLIG K+LKQ++KVFG LVK
Sbjct: 304 LVDNA--TLSTAQYLRKLPDLDRLLGRVKASIQSSEALLLPLIGAKILKQRIKVFGLLVK 361
Query: 660 GLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDV 719
GLR+ +DLL L+ KE + SL+++ P+ DG +GLDKFLTQFEAAIDSDFP++Q+H+
Sbjct: 362 GLRVGLDLLRLLQKEC-LTASLAKVVSLPVLDGDNGLDKFLTQFEAAIDSDFPNFQDHNA 420
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TD D ETLSIL+ELFIEKA++WS++I+AISC+DVLRSF++TA SSG M RP+ILP SK
Sbjct: 421 TDFDTETLSILMELFIEKATEWSQLIYAISCVDVLRSFSITAKFSSGVMCRPVILPLSKP 480
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
+ D GG L IKGLWHP+ALGE+GGLPVPND+ L +++ PRTLLLTGPNMGGKS
Sbjct: 481 SNICNDTGGSTLNIKGLWHPYALGESGGLPVPNDLHLAGNTNIRYPRTLLLTGPNMGGKS 540
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
TLLRA+CLAVI+AQLGC+VP E CVLSL D IFTRLGATDRIMTGESTF +ECTETASVL
Sbjct: 541 TLLRASCLAVIMAQLGCYVPGETCVLSLVDIIFTRLGATDRIMTGESTFFIECTETASVL 600
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
Q AT +SLV+LDELGRGTSTFDGYAIAYAVFR LVE +NCRLLFATHYHPLTKEFASHPH
Sbjct: 601 QNATYNSLVLLDELGRGTSTFDGYAIAYAVFRHLVETVNCRLLFATHYHPLTKEFASHPH 660
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019
V LQHMAC+FK S++ S +QELVFLYRLTSGACPESYG+QVA+MAG+P+ VVE+A A
Sbjct: 661 VALQHMACSFKLKSQSSSPTEQELVFLYRLTSGACPESYGMQVALMAGIPKTVVESALSA 720
Query: 1020 ALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVD 1058
A MKK ESFKSSEQR+ FS+LHE+W T++++S+ D
Sbjct: 721 AQVMKKMNRESFKSSEQRANFSTLHEQWFTTLLDISKTD 759
>gi|168029288|ref|XP_001767158.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681654|gb|EDQ68079.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 903
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/920 (49%), Positives = 600/920 (65%), Gaps = 86/920 (9%)
Query: 220 GVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWN 279
G+ + A +KFEWL P+KI+DA RRPD PLYDKRTL+IPP+ L KM+ASQ+QYW
Sbjct: 9 GLPQGSKWAAAAAKFEWLLPNKIKDAMGRRPDHPLYDKRTLHIPPDVLSKMTASQRQYWT 68
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
KS+YMD +LFFKVGKFYELYE DAEIG KE+DWK+TLSGVGKCRQVG+ ESGIDDAV+K
Sbjct: 69 AKSKYMDTVLFFKVGKFYELYEFDAEIGQKEMDWKLTLSGVGKCRQVGVPESGIDDAVQK 128
Query: 340 LVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEG 399
LVARGYKVGR+EQLETSEQAK R ++ R L +VVTPST +DG + P+AVHLLA++E
Sbjct: 129 LVARGYKVGRVEQLETSEQAKQR-GGGMVQRDLTHVVTPSTRLDGNLRPEAVHLLALRED 187
Query: 400 NC-GP-DN----GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
GP DN GSV GFAFVD AA + +VGTINDD S +AL +LL QV+P+E++YE
Sbjct: 188 TLDGPHDNALSQGSVAIGFAFVDAAAGKFYVGTINDDCSRSALESLLAQVAPQEILYELG 247
Query: 454 GLCKEAQKALRKFSAGSAALELTPAMAVTD-FLDASEVKKLVQLNGYF-NGSSS-----P 506
G+C + + +TP +TD F +A+ KL++ YF +G SS P
Sbjct: 248 GICCQL------------PVMMTP---LTDEFQEANFAMKLMKDKKYFRSGGSSGDFRGP 292
Query: 507 WSKALENVMQHDIGFSALGGLISHLSRLML-DDVLRNGDILPYKVYRDCLRMDGQTL--- 562
W +ALE + + SALG L++HL+R+ + D++L NG +L Y+V+R LR+DGQ++
Sbjct: 293 WPEALEILTNKHLAASALGALVAHLTRMKVNDELLPNGVLLSYEVFRGSLRLDGQSIVNL 352
Query: 563 -----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
YLD CVT GKR+LR WICHPL++ +N+RLD VE L E
Sbjct: 353 ELLENKDDGSRAGTLLDYLDKCVTKFGKRMLRRWICHPLQNTAELNDRLDAVEELSSREE 412
Query: 606 VVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAM 665
+ ++ + LR LPDLERL+ RV+ +S+ V+P+ KKV ++++K FG V+ LR
Sbjct: 413 MACLIREDLRVLPDLERLVARVRGLAGSSNLGVVPMAAKKVHQRRMKTFGEAVQALRGGF 472
Query: 666 DLLMLMH--KEGHIIPSLSRIFKPP--IFDGSDGLDKFLTQFEAAID---SDFPDYQNHD 718
+LL + ++G + P +R+ + + DG+ LD L ++ ID S Y
Sbjct: 473 ELLEKLQSCRDG-LGPPKARLLEAAMSLGDGNAALDT-LEAIDSCIDRSSSAIKLYSKGG 530
Query: 719 VT--------------DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMS 764
T + +AE+L ++ F E + W + ++ +D+L SFA + ++
Sbjct: 531 ATDDDNDSDSDELSALEKEAESLMKVMLSFNEHSELWQAAVETLARLDILISFAAISKIA 590
Query: 765 SGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCL 824
+G RP + Q+ N + GG +L IKGLWHP+ G NGG+ VPND+ LG +
Sbjct: 591 AGPTCRPQFV-QNNNVGL----GGSILDIKGLWHPYGSGGNGGVIVPNDVELGTTRKESS 645
Query: 825 --PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
PRT+LLTGPNMGGKSTLLRATCLAVI+AQLGCFVP C LS DTIFTRLGA+DRIM
Sbjct: 646 VNPRTMLLTGPNMGGKSTLLRATCLAVIMAQLGCFVPGNSCRLSPVDTIFTRLGASDRIM 705
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G STF+VECTE ASVL+ AT +SLV+LDELGRGTSTFDGYAIAYAV R +V+ ++CRLL
Sbjct: 706 EGHSTFMVECTEAASVLRHATNNSLVVLDELGRGTSTFDGYAIAYAVLRHVVDTLDCRLL 765
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK--GDQELVFLYRLTSGACPESYGL 1000
FATHYH LT EFASHP V L+HMAC+ + K G+QE+VFLY+LT G C +SYGL
Sbjct: 766 FATHYHALTTEFASHPSVGLRHMACSLLQSDYKSGKSIGEQEIVFLYKLTEGVCQQSYGL 825
Query: 1001 QVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCN 1060
QVA +AG+P +V +A A+ A+K I +F ++ + LH +W +V +
Sbjct: 826 QVATLAGLPPSLVRSAECASNAIKTKISSAFDAALVKEGLPHLHMQWFAALVEA----FS 881
Query: 1061 SDDDDAYDTLFCLWHELKNS 1080
D+DD +T C+W E++ S
Sbjct: 882 FDEDDFMETFICIWEEMRRS 901
>gi|302811241|ref|XP_002987310.1| hypothetical protein SELMODRAFT_125776 [Selaginella moellendorffii]
gi|300144945|gb|EFJ11625.1| hypothetical protein SELMODRAFT_125776 [Selaginella moellendorffii]
Length = 932
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/938 (46%), Positives = 583/938 (62%), Gaps = 81/938 (8%)
Query: 182 VVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQ---DSVAGVKNCEEEADTTSKFEWLD 238
+VP KR+ +D + D SKR +LL+ D + EA +KFEW+
Sbjct: 36 LVPGTKRVRDDF-------SRETFDESKRKKLLEALGDDEGSKQGAWAEAQ--AKFEWMQ 86
Query: 239 PSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYE 298
PS IRD N R DPL+D RT++IP LKKMSASQ+QYW K YMD++LFFKVGKFYE
Sbjct: 87 PSNIRDGNGRNHSDPLFDVRTVHIPENVLKKMSASQRQYWTTKCHYMDIVLFFKVGKFYE 146
Query: 299 LYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQ 358
LYELDAEIGHKELDWK+T+SGVGKCRQVG+ ESGI+DAV+KLVARGYKVGR+EQ+ETSEQ
Sbjct: 147 LYELDAEIGHKELDWKMTISGVGKCRQVGVPESGIEDAVQKLVARGYKVGRMEQVETSEQ 206
Query: 359 AKA-RHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKE--GNCGPDNGSVVYGFAFV 415
AKA R N+++ RKLV VVTPST DG + P+A+HLLA+KE N GP +V+YGFAF
Sbjct: 207 AKAKRGPNAMVERKLVQVVTPSTLTDGIMKPEAIHLLAVKEVLENSGPS--AVIYGFAFA 264
Query: 416 DCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF-SAGSAALE 474
D A +VG+ D+ + +AL AL+MQ++P+EV+YE GL A K +++ GS L
Sbjct: 265 DAAGGLCYVGSFCDNDAYSALDALVMQIAPQEVLYEIGGLSPSALKVFQRYIRPGSLPLV 324
Query: 475 LTPAMAVTDFLDASEVKKLVQLNGYF------NGSSSPWSKALENVMQHDIGFSALGGLI 528
LTP DF + + V +L+ GYF +G + L+ V D +ALG L+
Sbjct: 325 LTPLQPGADFPEPATVLELISSRGYFQECVKCSGQQPGFPGVLDTVDHKDAAMTALGALV 384
Query: 529 SHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCV 568
SHL R+ +D + NG + Y++Y +R+DGQT+ YLDSC
Sbjct: 385 SHLHRIKMDAEIYNGVLCAYELYWGFMRLDGQTIANLELLANTANGGKAGTLMGYLDSCA 444
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK 628
T+ KRLLR WICHPL+D + IN+RLD VE L+ N E + LRK+PDLERL R++
Sbjct: 445 TAFAKRLLRRWICHPLQDTKAINHRLDSVEELLCNPECAAELRALLRKVPDLERLSARLR 504
Query: 629 ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPP 688
+S VL + K+ ++++K V GL A +L + + +P+ +R+ +
Sbjct: 505 GFSDSSFAEVLLPLAKQAFQRRLKTLCLAVSGLLRAYQVLECLRQ----MPAKARLLRRA 560
Query: 689 --IFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAE--TLSILIELFIEKASQWSEV 744
+ ++ L E +D + D + + TLS +I F + W+ +
Sbjct: 561 CKLLKVKSSIE-CLWSMEPKLDMEKQSLNTDQDEDEETQRKTLSWMILEFNKHQRHWTAI 619
Query: 745 IHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
+ A+S IDVL SFA + G RP V D G VL+++GLWHPFA
Sbjct: 620 VDALSYIDVLISFAAAKRAAEGPTCRPTF--------VAADQGVAVLEMQGLWHPFAAAG 671
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
GG VPNDI LG PR +LLTGPNMGGKSTLLRATC+A ++AQLGC+VP E C
Sbjct: 672 MGGTFVPNDIALGLGK----PRAILLTGPNMGGKSTLLRATCVATLMAQLGCYVPSESCT 727
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
LSL DTIFTR+GA DRIM+GESTF+VEC E S+L AT +SLV+LDELGRGTSTFDGYA
Sbjct: 728 LSLVDTIFTRIGARDRIMSGESTFMVECAEAGSILCNATSNSLVVLDELGRGTSTFDGYA 787
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
IAYAVFR LVE + CRL+FATHYHPLT+EF+ HP V+LQHMAC+F S+S D++L
Sbjct: 788 IAYAVFRHLVEAVGCRLVFATHYHPLTQEFSGHPSVSLQHMACSFDSSSS-----DRQLA 842
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
FLY+L +GA SYGLQVA++AG+P VV+AA A+ + + F S S +
Sbjct: 843 FLYKLRAGASSASYGLQVALLAGIPASVVDAARGASELIAPRL-RGFSS-------SGML 894
Query: 1045 EEWLKTIVNVSRVDCNS--DDDDAYDTLFCLWHELKNS 1080
WL+ + +++ +D S + Y +L LW EL+ +
Sbjct: 895 NCWLRRVCSMA-MDSGSIAGAQEDYKSLLGLWSELQTA 931
>gi|302814979|ref|XP_002989172.1| hypothetical protein SELMODRAFT_129323 [Selaginella moellendorffii]
gi|300143072|gb|EFJ09766.1| hypothetical protein SELMODRAFT_129323 [Selaginella moellendorffii]
Length = 932
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/938 (46%), Positives = 582/938 (62%), Gaps = 81/938 (8%)
Query: 182 VVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQ---DSVAGVKNCEEEADTTSKFEWLD 238
+VP KR+ +D + D SKR +LL+ D + EA +KFEW+
Sbjct: 36 LVPGTKRVRDDF-------SRETFDESKRKKLLEALGDDEGSKQGAWAEAQ--AKFEWMQ 86
Query: 239 PSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYE 298
PS IRD N R DPL+D RT++IP LKKMSASQ+QYW K YMD++LFFKVGKFYE
Sbjct: 87 PSNIRDGNGRNHSDPLFDVRTVHIPENVLKKMSASQRQYWTTKCHYMDIVLFFKVGKFYE 146
Query: 299 LYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQ 358
LYELDAEIGHKELDWK+T+SGVGKCRQVG+ ESGI+DAV+KLVARGYK+GR+EQ+ETSEQ
Sbjct: 147 LYELDAEIGHKELDWKMTISGVGKCRQVGVPESGIEDAVQKLVARGYKIGRMEQVETSEQ 206
Query: 359 AKA-RHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKE--GNCGPDNGSVVYGFAFV 415
AKA R N+++ RKLV VVTPST DG + P+A+HLLA+KE N GP +V+YGFAF
Sbjct: 207 AKAKRGPNAMVERKLVQVVTPSTLTDGIMKPEAIHLLAVKEVLENSGPS--AVIYGFAFA 264
Query: 416 DCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF-SAGSAALE 474
D A +VG+ D+ + +AL AL+MQ++P+EV+YE GL A K +++ GS L
Sbjct: 265 DAAGGLCYVGSFCDNDAYSALDALVMQIAPQEVLYEIGGLSPGALKVFQRYIRPGSLPLV 324
Query: 475 LTPAMAVTDFLDASEVKKLVQLNGYF------NGSSSPWSKALENVMQHDIGFSALGGLI 528
LTP DF + + V +L+ GYF +G + L+ V D +ALG L+
Sbjct: 325 LTPLQPGADFPEPATVLELISSRGYFQECVKCSGQQPGFPGVLDTVDHKDAAMTALGALV 384
Query: 529 SHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCV 568
SHL R+ +D + NG + Y++Y +R+DGQT+ YLDSC
Sbjct: 385 SHLHRIKMDAEIYNGVLCAYELYWGFMRLDGQTIANLELLANTANGGKAGTLMGYLDSCA 444
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK 628
T+ KRLLR WICHPL+D + IN+RLD VE L+ N E + LRK+PDLERL R++
Sbjct: 445 TAFAKRLLRRWICHPLQDTKAINHRLDSVEELLCNPECAAELRALLRKVPDLERLSARLR 504
Query: 629 ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPP 688
+S VL + K+ ++++K V GL A +L + + +P+ +R+ +
Sbjct: 505 GFSDSSFAEVLLPLAKQAFQRRLKTLCLAVSGLLRAYQVLECLRQ----MPAKARLLRRA 560
Query: 689 --IFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAE--TLSILIELFIEKASQWSEV 744
+ ++ L E +D + D + + TLS +I F + W+ +
Sbjct: 561 CKLLKVKSSIE-CLWSMEPKLDMEKQSLNTDQDEDEETQRKTLSWMILEFNKHQRHWTAI 619
Query: 745 IHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
+ A+S IDVL SFA + G RP V D G VL+++GLWHPFA
Sbjct: 620 VDALSYIDVLISFAAAKRAAEGPTCRPTF--------VAADQGVAVLEMQGLWHPFAAAG 671
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
GG VPNDI LG PR +LLTGPNMGGKSTLLRATC+A ++AQLGC+VP E C
Sbjct: 672 MGGTFVPNDIALGLGK----PRAILLTGPNMGGKSTLLRATCVATLMAQLGCYVPSESCT 727
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
LSL DTIFTR+GA DRIM+GESTF+VEC E S+L AT +SLV+LDELGRGTSTFDGYA
Sbjct: 728 LSLVDTIFTRIGARDRIMSGESTFMVECAEAGSILCNATSNSLVVLDELGRGTSTFDGYA 787
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
IAYAVFR LVE + CRL+FATHYHPLT+EF+ HP V+LQHMAC+F S+S D++L
Sbjct: 788 IAYAVFRHLVEAVGCRLVFATHYHPLTQEFSGHPSVSLQHMACSFDSSSS-----DRQLA 842
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
FLY+L +GA SYGLQVA++AG+P VV+AA A+ + + F S S +
Sbjct: 843 FLYKLRAGASSASYGLQVALLAGIPASVVDAARGASELIAPRL-RGFSS-------SGML 894
Query: 1045 EEWLKTIVNVSRVDCNS--DDDDAYDTLFCLWHELKNS 1080
WL+ + + + +D S + Y +L LW EL+ +
Sbjct: 895 NCWLRRVCSTA-MDSGSIAGAQEDYKSLLGLWSELQTA 931
>gi|194695094|gb|ACF81631.1| unknown [Zea mays]
Length = 497
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 299/508 (58%), Positives = 369/508 (72%), Gaps = 14/508 (2%)
Query: 575 LLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
+LR WICHPLKD++ IN RLDVVE ++N + YL+K+PDLERLLG+V++ V S
Sbjct: 1 MLRRWICHPLKDIDAINKRLDVVEGFIQNCGLGPTTLGYLQKIPDLERLLGQVRSTVGLS 60
Query: 635 SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSD 694
S + LP IG+K++K+++K F L+ GLR +DLL + + H I +L +I P
Sbjct: 61 SLLQLPFIGEKIIKKRIKTFIMLINGLRNGIDLLNDLQRADHGILALYKIVDIPSLSY-- 118
Query: 695 GLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVL 754
L + + +FE + ++FP Q DV A L+ L+++FI KAS+WS VI+A+S IDVL
Sbjct: 119 -LPELIHKFEERMQNEFPCGQVSDVNANGANDLAALMDVFIGKASEWSLVINAVSTIDVL 177
Query: 755 RSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI 814
RSFA S GAM RP +L + + PVL++KGLWHP+A N VPND+
Sbjct: 178 RSFAAMTLSSFGAMCRPQVLLK---------DDVPVLRMKGLWHPYAFAGNANSLVPNDL 228
Query: 815 LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR 874
LG+D LLLTGPNMGGKST++RATCLAV+LAQLGC+VPC C L+LAD+IFTR
Sbjct: 229 TLGQDLSGLNRFALLLTGPNMGGKSTIMRATCLAVVLAQLGCYVPCTSCELTLADSIFTR 288
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
LGATDRIMTGESTFLVECTETASVLQKAT DSLV+LDELGRGTSTFDGYAIAYAVFR LV
Sbjct: 289 LGATDRIMTGESTFLVECTETASVLQKATVDSLVLLDELGRGTSTFDGYAIAYAVFRHLV 348
Query: 935 ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGAC 994
ER+ CR LFATHYH LTKEFASHPHV+LQHMAC FK S+ G +EL FLYRLTSGAC
Sbjct: 349 ERVRCRQLFATHYHSLTKEFASHPHVSLQHMACMFKPRSDG--NGQKELTFLYRLTSGAC 406
Query: 995 PESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNV 1054
PESYGLQVA MAG+P+ +VE AS A M+ I +FKSSEQR+EFS+LHEEWL+ + V
Sbjct: 407 PESYGLQVAAMAGIPKSIVEKASVAGQVMRAKIAGNFKSSEQRAEFSTLHEEWLRAALAV 466
Query: 1055 SRVDCNSDDDDAYDTLFCLWHELKNSYQ 1082
S +D DDDD DTLFC+ ELK+ ++
Sbjct: 467 SAMDGQPDDDDVMDTLFCIQQELKSHFR 494
>gi|384252001|gb|EIE25478.1| hypothetical protein COCSUDRAFT_40713 [Coccomyxa subellipsoidea
C-169]
Length = 874
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 339/841 (40%), Positives = 461/841 (54%), Gaps = 97/841 (11%)
Query: 261 YIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGV 320
+ PPE SQKQYW VKS Y D ++FFKVGKFYELYE DAEIG + L W++T++GV
Sbjct: 16 WCPPE-------SQKQYWTVKSSYRDTIIFFKVGKFYELYEDDAEIGAQVLGWRMTVTGV 68
Query: 321 GKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVTPS 379
G CRQVG ESG+++AV +LV+ GYKV R+EQ+ET+++AKA R + I R+L V TP+
Sbjct: 69 GHCRQVGCPESGVEEAVSRLVSAGYKVARMEQMETAQEAKAARGPKATIRRQLTRVHTPA 128
Query: 380 TTVDGTIGPDAVHLLAIKEG-----NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
T G + DAVHL+A+ E + V + FAF+D AA R +VG +DDA +
Sbjct: 129 TAT-GNVSVDAVHLMALHEAPIQNHATSSQDSRVTFSFAFLDAAAGRFYVGVADDDAGRS 187
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLV 494
LGALL QV+P+E++ L Q+AL S S A+E+T +F D +
Sbjct: 188 TLGALLTQVAPRELLVRRNALSSTTQRAL---STPSVAMEVTNVTGA-EFPDPDAIASAS 243
Query: 495 QLNGYFNGSSSPWSKALENVMQHDIG-FSALGGLISHLSRLMLDDVLRN--GDILPYKVY 551
L FNG P N+ G +AL L +L R +D L ++ Y+ Y
Sbjct: 244 SLESMFNGLIVP-----HNIQAMGAGALTALSALCLYLKRAKANDELATHAQKVVSYETY 298
Query: 552 RDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
L +DG TL LD+C + G+RLLR W+C PL DV I
Sbjct: 299 AGALCLDGPTLTNLELLENTEGGTEGSLLAQLDTCASPGGRRLLRQWLCRPLLDVGAIEQ 358
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVK 652
RLD + ++K ++V + LR +PDLER LGR + A + + K+++
Sbjct: 359 RLDAADEIVKRPDLVTSLLATLRSMPDLERALGRARNAAAAPQPGLPTWALQAAQKRRLA 418
Query: 653 VFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIF-------------KPPIFDGSDGLDKF 699
V + A+ +L + + G P + + P G+D+
Sbjct: 419 ALDIAVTAVAKAVSVLRELQR-GQADPDGPALSALLVAAAASAPDERSPALKALMGIDEA 477
Query: 700 LTQFEA---------------------------AIDSDFPDYQNHDVTDLDAETLSILIE 732
L E A + + D DL+ S LIE
Sbjct: 478 LVSSEGPAKGSKGKAKAQGRSVSLHPEALASLRAGSNSAAEESEDDSLDLEISLTSELIE 537
Query: 733 LFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLK 792
F ++ W + A+S IDVL +FA S+G RP +LP + + G +L
Sbjct: 538 RFNAHSTVWEGLEEALSTIDVLTAFASFTETSNGQTCRPTVLPLAS-----KAGRGALLD 592
Query: 793 IKGLWHPFAL--GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
++GLWHP A+ G GG V ND+++G + + RTLLLTGPNMGGKST+LRA AVI
Sbjct: 593 LRGLWHPCAVPGGGAGGCIVVNDLVMGGRAPET-ARTLLLTGPNMGGKSTILRAAATAVI 651
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
LAQ+GC VP L++AD IFTRLGA DRI+ G+STFLVECTE A++L+ ATQDSLV+
Sbjct: 652 LAQMGCPVPAASATLTVADRIFTRLGAQDRIVAGQSTFLVECTEAAAILRHATQDSLVLC 711
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTSTFDGYAIA+AV + L I+CRLLFATHYHPLT EF + P V L HM A
Sbjct: 712 DELGRGTSTFDGYAIAHAVLKHLSSSIDCRLLFATHYHPLTMEFLASPRVKLGHME-ALV 770
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGES 1030
+ ++ S+G + FLY+L SGACP+SYGLQVA +AG+P VV A A +++ + +
Sbjct: 771 TGGDSSSEG--HITFLYKLLSGACPKSYGLQVARLAGIPFNVVTVAQQAGTQLEEKLQGA 828
Query: 1031 F 1031
F
Sbjct: 829 F 829
>gi|328771739|gb|EGF81778.1| hypothetical protein BATDEDRAFT_86831 [Batrachochytrium dendrobatidis
JAM81]
Length = 1194
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 304/889 (34%), Positives = 443/889 (49%), Gaps = 122/889 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL I+DAN+ PDDP YD RTLYIPP A + +KQ+W +K+ + D ++FFK
Sbjct: 311 RYSWL--QDIKDANKNAPDDPNYDPRTLYIPPSAWANFTPFEKQFWEIKAAHWDTVVFFK 368
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA+IGH++ D K T R VG+ ES D + +A+G+KV ++EQ
Sbjct: 369 KGKFYELYEKDADIGHQKFDLKRT--DRVNMRMVGVPESSFDHWAAQFIAKGFKVAKVEQ 426
Query: 353 LETS------EQAKARHTNSVISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGNCGPD 404
+E S ++ ++ + +I R+L +V+T T VD G + D + +AIKE +
Sbjct: 427 MENSIGKAIRDRESSKKEDKIIRRELTSVLTAGTLVDAGLLTNDLNTYCMAIKE-EVSAE 485
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+ +G FVD A+ + T DD L+MQV P E++ E +G+ +A +
Sbjct: 486 HLPPTFGICFVDTASAEFNICTFEDDVDRTKFTTLIMQVKPTELVLE-KGMLSKATMRIL 544
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF--------NGSS----SPWSKALE 512
K S + + +F D + GYF N SS S W +AL
Sbjct: 545 KNSLENPIFNF--LLRDKEFWDEEVTMDELNRGGYFKDMASTLPNESSSTVDSSWPQALR 602
Query: 513 NVMQHDIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCLRMDGQTL------- 562
+ H I SA GGL+ +L L LD L +N + L +DGQTL
Sbjct: 603 ESINHSIAMSAFGGLLFYLRSLKLDTSLVSAKNFHLYDPIKSSGTLILDGQTLVNLELFE 662
Query: 563 -------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
L+ CVT GKRL + W+CHPL+ ++ +N+RLD ++ ++
Sbjct: 663 NSSDGSDRGTLFKLLNQCVTPFGKRLFKLWLCHPLQSIDLLNSRLDAIDDFTSIVGLLDT 722
Query: 610 VAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLM 669
V + KLPDLER++ AR+ SC + I L +VF + + L
Sbjct: 723 VRSNISKLPDLERIV----ARIHTKSCHIKDFI--LALAAFDRVFTVMTECQSYIGKLQS 776
Query: 670 LMHKEGHIIPSLSRIFKPPI----------FDGSDGLDKFLTQFEAAIDSDFP------- 712
+ K P S I P + F+ D D+ + + D F
Sbjct: 777 ALLK-----PLFSEILNPELMELIQYFKVAFNHQDAFDEGKIRLHSGYDDVFDSADKNVV 831
Query: 713 -----------------DYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLR 755
Y ++ E + I I+ S W+ +S +
Sbjct: 832 AIEKKLDVYRRECEKKLSYNGITFKNIGKEIFQMEIPAKIKVPSDWT----VMSNTKAVN 887
Query: 756 SFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDIL 815
+ T S ++ L + + A+RQ K + +G+N + ND
Sbjct: 888 RYYTTKSRE--MINEMLEAQEIREEAMRQIKTRVFEKFDTQYKG-CIGDNF---IANDTC 941
Query: 816 LGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRL 875
LG DS + +LLTGPNMGGKSTLLR TC+AVI++QLGC+VP C L+ D IFTR+
Sbjct: 942 LGGDSGNAT--MILLTGPNMGGKSTLLRQTCIAVIMSQLGCYVPAAKCRLTPFDRIFTRI 999
Query: 876 GATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE 935
GA+D IM G+STF+VE TET+ +L++AT SLVILDELGRGTST+DGYAIAYAV L+
Sbjct: 1000 GASDNIMAGQSTFMVELTETSKILREATPRSLVILDELGRGTSTYDGYAIAYAVLNHLIT 1059
Query: 936 RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACP 995
+ LF+THY LT EF +HP + + HM +F ++ N +++ FLY+L G CP
Sbjct: 1060 NVRSLGLFSTHYGTLTNEFHNHPLIKMMHM--SFFADQVN-----KQVTFLYKLEHGNCP 1112
Query: 996 ESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGES---FKSSEQRSEFS 1041
+SYG+ VA +A VP+K+V+ A A KS E +SS+Q +FS
Sbjct: 1113 KSYGMNVASLANVPKKIVDRAEDVA----KSFEERQVCHQSSQQAHQFS 1157
>gi|340966746|gb|EGS22253.1| DNA mismatch repair protein msh6-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 1238
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 295/902 (32%), Positives = 425/902 (47%), Gaps = 153/902 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I DAN+ P P YD TLYIPP A + S +KQYW +K D ++FFK
Sbjct: 319 RYPWL--ANILDANKNPPGHPDYDPSTLYIPPSAERNFSPFEKQYWEIKKNLWDTVVFFK 376
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + + VA+GYKV R++Q
Sbjct: 377 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEGSLDMWINQFVAKGYKVARVDQ 434
Query: 353 LET--SEQAKARHTN-----SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E+ ++ + R +N VI R+L ++T T V+G++ D A + AIKE
Sbjct: 435 MESLLGKEMRERDSNVKKVDKVIRRELTCILTAGTLVEGSMLQDDMATYCAAIKEVMI-- 492
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + W+ DD + Q+SP+E++ E L +A + L
Sbjct: 493 -DDKPSFGVAFVDAATGQFWLSEFEDDVELTRFETFVAQISPRELLLEKSRLSTKALRIL 551
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGS--SSPWSKALENVMQHDIG 520
+ ++ + L P T+F DA ++ ++ + YF W L + D+
Sbjct: 552 KGNTSPTTIWNYLKPG---TEFWDADMTRRELECSDYFKAEDGKDKWPDKLCEMKDKDLA 608
Query: 521 FSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL--------------- 562
SALGGL +L L LD +L G+ Y ++R+ L +DGQTL
Sbjct: 609 MSALGGLTHYLRFLKLDSSLLSQGNFERYNPIHRNGTLILDGQTLINLEIFANTANGGPE 668
Query: 563 -----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
L+ C+T GKRL R W+CHPL +++ IN RLD VE L + ++ + K+
Sbjct: 669 GTLHNLLNRCITPFGKRLFRQWVCHPLCNIQKINERLDAVEMLNADQSILRQFTSQMAKM 728
Query: 618 PDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHI 677
PDLERL+ R+ A V L G + + + + G+ G + L+ M
Sbjct: 729 PDLERLISRIHAGACRPDDFVRVLEGFEQIDYTMSLLGAFAGGNGLVDRLIAAM------ 782
Query: 678 IPSLSRIFKPPI------FDGSDGLDKFLTQFEAAIDSDFPDYQNH-------------- 717
P+L K P+ FD ++ + E +D DF +
Sbjct: 783 -PNL----KEPLAYWENAFDKKKAKEEKVFIPERGVDEDFDRTADEIERIKDELNSLLEK 837
Query: 718 ----------DVTDLDAETLSILIELFIEKASQW-------------------------- 741
TD+ E I + ++ S W
Sbjct: 838 QKAALKCKTLKFTDVGKEIYQIEVPKSVKVPSSWRQMSATSSVKRYYFRELENLIRELQE 897
Query: 742 SEVIHAISCIDVLRSF-----------------------AVTASMSSGAMHRPLILPQSK 778
+E IH+ DV +F ++ + SS A+ P P
Sbjct: 898 AEEIHSQVTKDVASNFFKKFDANYDIWLQAIRIIAQLDCLISLAKSSSALGVPSCRP--- 954
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V D+ V++ K L HP + +PNDI LG D + LLTG N GK
Sbjct: 955 ---VFVDDERSVIEFKELRHPCMINTVADF-IPNDIKLGGDE----AKINLLTGANAAGK 1006
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST+LR TC+AVI+AQ+GCFVP E L+ D I +RLGA D I +STF VE +ET +
Sbjct: 1007 STILRMTCIAVIMAQIGCFVPAESARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKI 1066
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L +AT SLVILDELGRGTS++DG A+A AV + I C FATHYH L EFA HP
Sbjct: 1067 LSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLAAEFAHHP 1126
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
V + M A + ++ + FLY+L G S+G+ A M G+P+KVV+ A
Sbjct: 1127 EVRARRMQIAV-------DEKERRVTFLYKLEDGVAEGSFGMHCASMCGIPKKVVDRAEV 1179
Query: 1019 AA 1020
AA
Sbjct: 1180 AA 1181
>gi|119180370|ref|XP_001241662.1| hypothetical protein CIMG_08825 [Coccidioides immitis RS]
Length = 1127
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 272/831 (32%), Positives = 416/831 (50%), Gaps = 103/831 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D ++ P P YD RTLYIPP A + S +KQYW +K ++ D ++FFK
Sbjct: 298 RYPWL--ANILDMDKNPPGHPDYDPRTLYIPPLAWSRFSPFEKQYWEIKQKFWDTVVFFK 355
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES ++ + VA+G+K+ R++Q
Sbjct: 356 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLEYWANQFVAKGFKIARVDQ 413
Query: 353 LETS------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPD 404
E++ E+ + + VI R+L V+T T VDG + D + + +A+KE
Sbjct: 414 SESALGKEMRERDDKKKGDKVIKRELSCVLTAGTLVDGAMLQDDMSTYCVAVKEALV--- 470
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+ +G +FVD A + ++ DD L+ Q P+E++ E + +A + L+
Sbjct: 471 DDLPAFGVSFVDTATGQFFLTEFTDDVDMTKFETLVAQTRPQELLLEKGFMSPKALRILK 530
Query: 465 KFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQHDI 519
+ + L P +F DAS ++ + + YF + W + L +++
Sbjct: 531 NNTNPTTIWNYLKPER---EFWDASTTRRELDASEYFVSVDQDNIEAWPEVLRQARDNEL 587
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------------- 562
S+ G LI +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 588 VISSFGALIQYLRMLKIERDLITIGNFTWYDPIRKASSLVLDGQTLINLEVFANSYDGGQ 647
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S + + L K
Sbjct: 648 DGTLFQLLNRCITPFGKRMFKQWVCHPLMDSKKINARLDAVDALNADSSIRDQFSSQLTK 707
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIAMDLLMLMHKE 674
+PDLERL+ +RV A +C + +VL+ +Q+ SL+K ++
Sbjct: 708 MPDLERLI----SRVHAGTCKCQDFV--RVLEGFEQIDYTMSLLKQTGSGDGVI------ 755
Query: 675 GHIIPSLSRI-----FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSI 729
GH+I S+ + + FD D + +A ++ DF D + +++A+ +
Sbjct: 756 GHLISSMPDMDGLLQYWKTAFDRVKAKDSGIFVPKAGVEEDF-DASTQRIEEIEAKLDQL 814
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L + E S S +I+ + I RP+ + D+
Sbjct: 815 LKRVRRELNS--SAIIYRDNAIGYPSC-------------RPVFV----------DSDRS 849
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
VL+ + L HP L G +PND+ LG ++ LLTG N GKST+LR TC AV
Sbjct: 850 VLEFQELRHPCMLATVGDF-IPNDVKLGGNTASI----NLLTGANAAGKSTVLRMTCTAV 904
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+GC+VPC L+ D I +RLGA D I +STF VE +ET +L +AT SLVI
Sbjct: 905 IMAQIGCYVPCASARLTPVDRIMSRLGANDNIFGAQSTFFVELSETKKILSEATSRSLVI 964
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTS++DG A+A AV + I FATHYH L EF HP ++ + M
Sbjct: 965 LDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEISPRRMRI-- 1022
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + D+ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1023 -----HVDEEDRRVTFLYKLEDGVAEGSFGMHCASMCGIPTKVIETAEVAA 1068
>gi|326437890|gb|EGD83460.1| hypothetical protein PTSG_04067 [Salpingoeca sp. ATCC 50818]
Length = 1327
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 308/948 (32%), Positives = 442/948 (46%), Gaps = 159/948 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL ++ RD N+R P +D +LYIPP KM+ +KQYW++K + + +LFFK
Sbjct: 386 RYAWL--ARPRDKNKRTEGHPEFDPTSLYIPPSGWAKMTPFEKQYWDIKQHHWNTILFFK 443
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DAEIG++E K+T V C G+ E D + +A+GYKV R+++
Sbjct: 444 KGKFYELYERDAEIGNREFQLKMT-DRVNMC-MAGVPEITFPDWAARFLAKGYKVARVDE 501
Query: 353 LETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPDAVHLLAIKEGNCGPDN 405
E + K R T + +I RKL V T T + D IG + ++AIKE D
Sbjct: 502 RENAIAKKMRETKTGKKGPKIIERKLSAVYTQGTLMGDFVIGDMSNFIMAIKE-----DE 556
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
+ YG F D A V DDA+ A L++QV PKE++ + L K + L +
Sbjct: 557 DTRTYGVCFADTATAEFNVCHFVDDAARTAFETLIVQVMPKELVLPKKSLSKVRVRCLSE 616
Query: 466 -----------FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV 514
G + M + + + + V + SP + L
Sbjct: 617 RPCLVGGEGRGTKGGRRFAFWSSQMTIDNLEKGTRARASVD-------ACSP--ERLRAF 667
Query: 515 MQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKV--YRDCLRMDGQTL--------- 562
+ D SALGGL+S+ L+LD +L G Y + L +DGQTL
Sbjct: 668 LSKDEAMSALGGLVSYFKTLLLDKSLLSQGTFFSYDPLHHGATLVIDGQTLQNLDVLCNM 727
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L C T+ GKR+ R W+CHPL+ V I R + V L ++ ++ ++
Sbjct: 728 QDGTTSGSLLELLCQCHTAFGKRMFRRWLCHPLRRVNDITERQNAVVDLTEHVDLRDALS 787
Query: 612 QYLR-----------------KLPDLERLLGRVKA-RVQASSCI---------VLPLIGK 644
L+ KL DL LL A Q C+ L I
Sbjct: 788 SMLKPLPDLERLLSRVHVGNCKLSDLISLLDAFDAVSGQDEGCVGSLFPNLKAELKAIAN 847
Query: 645 KVLKQQVKVFGSL------VKGLRIAMDLLMLMHKE-GHIIPSLSRIFKP----PIFDGS 693
+Q+ K L + +A+D + + K + ++ R F + S
Sbjct: 848 IFDRQEAKATDKLTPKPGALPEYDVAVDQMQSIEKRLNEHLANVRREFGAGKAISFWQPS 907
Query: 694 DGLDKFLTQFEAAIDSDFPD-------------YQNHDVTDLDA------ETLSILIELF 734
G +++ Q A+ P Y + + L A ET+S ++ F
Sbjct: 908 AGRERYQIQVRVAMKK-VPSSWKLMSSTKANKRYHSPEAVRLVAKWLEAEETISQFLKTF 966
Query: 735 I--------EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
E ++ + A+S +D L S M RP+ + S + A R
Sbjct: 967 FSRVLNSINEHREKFGAAVSALSQLDCLLSLYRAKDSMGSPMCRPVFVSTSGDKASRA-- 1024
Query: 787 GGPVLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
VL ++ + HP L + + +PND LG + T++LTGPNMGGKSTLLR
Sbjct: 1025 ---VLDLREMRHP-TLQHSSSITDYIPNDTHLGGEE----ATTMVLTGPNMGGKSTLLRQ 1076
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AVI+AQLGC+VP E L+ D IFTR+GA D I+ G STF+VE ETA++L KAT
Sbjct: 1077 TCIAVIMAQLGCWVPAESFTLTPVDRIFTRIGANDNIVAGRSTFMVELKETATILNKATS 1136
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTSTFDGYAIA+AV + + I CR +FATHYH LT E ++P+VT +
Sbjct: 1137 SSLVILDELGRGTSTFDGYAIAFAVLSHITDAIRCRCMFATHYHLLTDELKTNPNVTNYN 1196
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
MAC + +++ FLY+L G C +SYG+ VA MAGV +VE A A+
Sbjct: 1197 MACVVDDHQ-------KDVTFLYKLQPGVCSKSYGMNVAHMAGVMDSIVETAKEKAVQY- 1248
Query: 1025 KSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDC----NSDDDDAYD 1068
E S F L + K + + V+ SDD D D
Sbjct: 1249 ----------EATSRFGKLQDRKAKQLALLRFVETVTALTSDDGDNGD 1286
>gi|50306061|ref|XP_452992.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642125|emb|CAH01843.1| KLLA0C17732p [Kluyveromyces lactis]
Length = 1194
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 295/906 (32%), Positives = 430/906 (47%), Gaps = 141/906 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA R DP YD RTLYIP +A K + +KQYW +KS+ D +LFFK
Sbjct: 237 RYQWLVHE--RDAEGRDKSDPDYDPRTLYIPGDAWSKFTPFEKQYWEIKSKMWDCILFFK 294
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA +GH D KI G + G+ E D + + GYKV +++Q
Sbjct: 295 KGKFFELYEKDAHLGHHLFDLKIAGGGRANMQLAGVPEMSFDYWASQFIQYGYKVAKVDQ 354
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG------- 402
E+ + R + ++ R+L V+T T D + A + +A++E
Sbjct: 355 KESMLAKEMREGSKGIVERELQCVLTSGTLTDSEMLKSDLATYCVAVREEPITYYDEEIL 414
Query: 403 --PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
P G +GFA +D A + + DD C+ L ++ Q P EVI E +C AQ
Sbjct: 415 ALPKTGK-YFGFAAIDTATGHIDLLEFEDDEECSQLDTIMSQFKPTEVIMEKSNVCSLAQ 473
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ--HD 518
K + KF+A A + +F D + + + YF S W L++ +
Sbjct: 474 KII-KFNAQPEA--IINQRTSKEFYDFEKTFDELITHEYFK-SMDRWPTVLKSYYETGKK 529
Query: 519 IGFSALGGLISHLSRLMLDDVLRN-GDILPYKVYRD--CLRMDGQTL------------- 562
+GF A GGL+S+L L LD L G + Y R CL +DG TL
Sbjct: 530 VGFHAFGGLLSYLQWLKLDTSLVTMGQVEEYNPVRSQTCLALDGITLQNLEIFANTYDGT 589
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
++ +T GKR LR W+ HPL +E IN+RLD V+ L+ + + ++ L
Sbjct: 590 DRGSLFKLINRAITPMGKRKLRKWVMHPLLKIEDINSRLDSVDLLLSDMNLRDLLENELL 649
Query: 616 KLPDLERLLGRVKA---RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLR-----IAMDL 667
KLPDLER+L RV + ++Q + ++ L +++ +F L L+ I L
Sbjct: 650 KLPDLERMLSRVHSCSLKIQYFNKVLCGFEDILALVEKLSIFADLKGSLKSYLTEIPSSL 709
Query: 668 LMLMH------------KEGHIIPSLSRIFKPPIFDGS--------DGLDKFLTQF---- 703
++ K+G I+P+ P FD S D L + LTQ+
Sbjct: 710 TTVLEAWSNAFDRNLAVKDGVIVPNRGV---EPEFDESMDRIQGIEDQLQECLTQYKKLL 766
Query: 704 --------------------------------EAAIDSDFPDYQNHDVTDL-----DAET 726
+ A + F Y + DV L +A
Sbjct: 767 KSSNIQFKDSGKEIYTIEVPMAATRNVPHEWTQMAANKSFKRYYSADVQRLARQMAEARE 826
Query: 727 LSILIE------LFIEKASQ----WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
+ ++E L+ + + W I AIS ID + S A T+ RP ++ +
Sbjct: 827 MHKVLEDDLKNRLYKKFTNHYNAVWLPTIQAISNIDCIISLARTSESLGFPACRPKLV-E 885
Query: 777 SKNPAVRQDNGGPVLKIKGLWHP-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPN 834
+P + G ++ K L HP F +G + +PND++LG+D+ P+ LLTG N
Sbjct: 886 GLHPETNEKLNG-YIRFKELRHPCFNMGSSSAKEFIPNDVVLGKDA----PQLGLLTGAN 940
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
GKST+LR TC+AVILAQLGC++PCE + D I TRLGA+D IM G+STF VE +E
Sbjct: 941 AAGKSTVLRMTCVAVILAQLGCYIPCEEAEFTPVDRIMTRLGASDNIMQGKSTFFVELSE 1000
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954
T +L T SL+++DELGRG S+ DG+AIA AV + I FATHY L F
Sbjct: 1001 TKKILDLVTNRSLLVVDELGRGGSSSDGFAIAEAVLHHVATHIQSLGFFATHYAALGSSF 1060
Query: 955 ASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
+HP+V MA S N + FLY+L G S+G+ VA M G+P+ VV+
Sbjct: 1061 TNHPNVQPLKMAILVDEESRN-------VTFLYKLVDGKSDGSFGMHVASMCGIPRSVVD 1113
Query: 1015 AASHAA 1020
AS AA
Sbjct: 1114 NASIAA 1119
>gi|406864091|gb|EKD17137.1| DNA mismatch repair protein Msh6 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1949
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 285/906 (31%), Positives = 433/906 (47%), Gaps = 151/906 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + ++D +R P YD RT+YIPP A K S + QYW +K ++ D ++FFK
Sbjct: 1016 RYPWL--ANLQDMDRNPIGHPDYDPRTVYIPPGAWAKFSPFETQYWEIKQKFWDTVVFFK 1073
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+GYK+ R++Q
Sbjct: 1074 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGYKIARVDQ 1131
Query: 353 LETS-----EQAKARHT---------NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAI 396
E++ +A+ + T + +I R+L V+T T V+G++ D A +AI
Sbjct: 1132 CESALGKEMREAEGKSTGKKVVVNKADKIIRRELACVLTGGTLVEGSMLQDDMATFCVAI 1191
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE + YG AFVD A + ++ DD L+ Q+ P+E++ E L
Sbjct: 1192 KEQMI---DDLPSYGVAFVDTATGQFFLSEFVDDVDLTKFETLIAQIRPQELLLEKSHLS 1248
Query: 457 KEAQKALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALE 512
+A + L+ + + L P+ ++F A ++ + NGYF G S W +ALE
Sbjct: 1249 TKALRILKNNTTPTTIWNHLKPS---SEFWTAEVTRRELGCNGYFVSEEGGSEIWPEALE 1305
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL------- 562
D SA+G L+ +L L L+ ++L + Y + L +DGQTL
Sbjct: 1306 AAKSSDALMSAMGALVQYLRTLKLERNLLSQQNFTAYSPIQKGTTLVLDGQTLINLEVFA 1365
Query: 563 -------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
L+ CVT GKR+ R W+CHPL D + IN RLD V+ L K+ +
Sbjct: 1366 NTFDGSKAGTLFALLNRCVTPFGKRMFRQWVCHPLADADRINERLDAVDMLNKDRTLSDQ 1425
Query: 610 VAQYLRKLPDLERLLGRVKARVQASSC----IVLPLIGKKVLKQQVKVFGSLVKGLRIAM 665
+ +PDLERL+ +R+ A SC V + G + ++ +++ KG + +
Sbjct: 1426 FVASMSSMPDLERLI----SRIHAGSCRPDDFVKVIDGFEQIEYTMELLERSAKGGKGIV 1481
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLD 723
D L+ + +P L+ K FD + + E ++ +F + Q+ + +++
Sbjct: 1482 DRLI------NAMPDLTGPIKFWKTAFDHQKAKESRILVPERGVEEEFDESQDR-IEEIE 1534
Query: 724 AETLSIL----IELFIEKASQWSEVIHAISCIDVLRSFAVTAS---MSSGAMHRPLILPQ 776
E +L EL + + + + ++V S V MSS A + P+
Sbjct: 1535 GELEDLLKRKRKELGGSQKINFKNIGKEVYQLEVPASIKVPKDWQMMSSAAAFKRYYFPE 1594
Query: 777 SKNPAVR-----QDNGGPVLKI------------KGLWHP------------------FA 801
K +R Q+ G ++K+ LW P A
Sbjct: 1595 LKT-LIRQLQEAQETHGQIVKVVARKLYARFDEDYSLWLPAVRTVSHLDCLISLAAASAA 1653
Query: 802 LGENGGLP--------------------VPN-------DILLGEDSDDCLPRTLLLTGPN 834
LGE P +PN D+ LG D+ + LLTG N
Sbjct: 1654 LGEPSCRPTFVESERSVIEFEELRHPCMLPNVTDFIPNDVKLGGDAANI----NLLTGAN 1709
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
GKST+LR TC+AVI+AQ+GC+VPC L+ D I +RLGA D I +STF VE +E
Sbjct: 1710 AAGKSTILRMTCVAVIMAQIGCYVPCISATLTPVDRIMSRLGANDNIFAAQSTFFVELSE 1769
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954
T +L +AT SLVILDELGRGTS++DG A+A +V + + C FATHYH L EF
Sbjct: 1770 TKKILAEATPRSLVILDELGRGTSSYDGVAVAQSVLHHVATHVGCTGFFATHYHSLATEF 1829
Query: 955 ASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
A HP + + M + +G++ + FLYRL G S+G+ A M G+P KV++
Sbjct: 1830 AGHPEIAPKRMQI-------HVDEGNRRVTFLYRLEDGVAEGSFGMHCAAMCGIPAKVID 1882
Query: 1015 AASHAA 1020
A AA
Sbjct: 1883 RAEVAA 1888
>gi|353241684|emb|CCA73482.1| related to MSH6-DNA mismatch repair protein [Piriformospora indica
DSM 11827]
Length = 1265
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 300/909 (33%), Positives = 423/909 (46%), Gaps = 168/909 (18%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD + RRP D YD R+LYIP EA K+ + + Q+W +K + D +LFF+ GKFYELYE
Sbjct: 320 VRDKDNRRPTDEGYDPRSLYIPKEAWKEFTPFETQFWEIKRDHYDTILFFQKGKFYELYE 379
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+ D K+T S V K VG+ ES D K +ARGYKVG++EQ ETS A+
Sbjct: 380 DDARIGHQLFDLKLT-SRV-KMSMVGVPESSFDFWANKFLARGYKVGKVEQAETSIGAEM 437
Query: 362 R--------HTNSVISRKLVNVVTPSTTVDGT--IGPDAVHLLAIKEGNCGPDN------ 405
R ++ R L V T T +DG I +A H ++I+ N
Sbjct: 438 RAAAGAGKGKGKELVKRVLNKVFTTGTLMDGEYLIDEEASHCVSIRVRLSAAQNEQSLTA 497
Query: 406 ----GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
G +GFA +D + + + DD LL Q+ PKEVI L +
Sbjct: 498 LKEQGESKFGFAILDSSTSEFKLCSFEDDVCRTRTETLLRQLRPKEVI---GNLSVSTNR 554
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL----NGYFNGSSSPWSKALENVMQH 517
L+ GS A +T V F + +K+L L +GS + +A+ +++
Sbjct: 555 LLKNVLPGSCA--ITSLRPVEGFDYQTTLKELSSLYPSPEDDDDGSGAGMPEAIRSMIGE 612
Query: 518 DIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCLRMDGQTL------------ 562
+ ALG +I +L L +D L +N +I + L +DGQTL
Sbjct: 613 EAPIIALGAMIWYLRTLNIDAALLSAKNFNIYDPMRRGEGLVLDGQTLAHIEVLMNSDGS 672
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L CVT GKRL R W+C PL++++ IN+RLD VE LM++ +R
Sbjct: 673 DDGTLLKLLGRCVTPFGKRLFRIWLCTPLREIKQINDRLDAVEDLMRHDTFEKEFTDLVR 732
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL---------RIAMD 666
+PDLER++ +R+ A +C V + KVL + K + + GL +
Sbjct: 733 GMPDLERIV----SRIHAGTCKVKDFL--KVL-ESFKKLNNGLSGLAEKASCFDTQTVAG 785
Query: 667 LLMLMHKEGHIIPSLSRIFKPPIFDG-----SDGLDK----------------------- 698
LL H + ++ +F PP D DG+D+
Sbjct: 786 LLRSAHDLKPYLKAVRGMFVPPSNDNFELIPEDGVDEEYDTIAKEIHDIETDLEQRLARL 845
Query: 699 --------------------FLTQFEAAIDSDFP-DYQNHDVTDLDA------------- 724
+L Q A P D+Q + T A
Sbjct: 846 AKKLDIKLEFWHSATGTKDIYLVQVNAPDKKSVPKDWQKQNDTKAKARFMVPDFAGPIRK 905
Query: 725 -----ETLSILIELFIEK--------ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP 771
ET+ +++ F + W + + +D L S A +S A+ P
Sbjct: 906 LKEARETMKTVVKGFTSRLYAAFDADRDVWLRTVRVTAELDCLLSLA----KASAAIGSP 961
Query: 772 LILPQSKNPAVRQDNGGPVLKIKGLWHP---FALGENGGLP-VPNDILLGEDSDDCLPRT 827
P+ V+ D + + L HP ALG GG + ND+ +G D R
Sbjct: 962 SCRPE----FVQSDKA--FVDFEELRHPGIAMALGAKGGADFIANDVKMGSDGKQ---RI 1012
Query: 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGEST 887
+LLTGPNM GKSTL+R TC+ VI+AQLG +VP LS D I TR+GA D + + ST
Sbjct: 1013 MLLTGPNMAGKSTLMRQTCVGVIMAQLGMYVPATGAKLSPVDAILTRMGAYDNMFSNSST 1072
Query: 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947
F VE E +L++AT SLVILDELGRGTSTFDG AIA AV L FATHY
Sbjct: 1073 FKVELDECCKILREATPKSLVILDELGRGTSTFDGIAIAGAVLHHLATHTLALSFFATHY 1132
Query: 948 HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAG 1007
LT ++A H ++++ HMA F + EN +EL++LY+L G P S+G VA +AG
Sbjct: 1133 STLTNDYAYHQNISMMHMATGF--DDEN-----RELIWLYKLVEGVAPSSFGTHVASLAG 1185
Query: 1008 VPQKVVEAA 1016
VP+ VVE A
Sbjct: 1186 VPKDVVERA 1194
>gi|295668168|ref|XP_002794633.1| DNA mismatch repair protein msh6 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286049|gb|EEH41615.1| DNA mismatch repair protein msh6 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1200
Score = 360 bits (925), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 265/852 (31%), Positives = 404/852 (47%), Gaps = 102/852 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 324 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 381
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 382 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 439
Query: 353 LETSEQAKARHTN-----------SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ + R +I R+L V+T T VDG + D + + +AIKE
Sbjct: 440 SESALGKEMREKQGKTGGSVGKQEKIIRRELACVLTSGTLVDGGMLQDDMSTYCVAIKEA 499
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N V+G AFVD A + ++ DD + Q P+E++ E + +A
Sbjct: 500 LV---NDLPVFGLAFVDTATGQFYLAEFIDDVDMTKFETFVAQTRPQELLLEKSVMSTKA 556
Query: 460 QKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF---NGSSS-PWSKALENV 514
+ L+ + + L P +F +A + + + YF +G + W + L
Sbjct: 557 LRILKNNTIPTTLWNYLKPG---KEFWEADITVRELDASNYFVSLDGDNLLAWPQVLREA 613
Query: 515 MQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL--------- 562
+ SA G L+ +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 614 RDKEFAMSAFGALVQYLRMLKIERDLITIGNFTWYDPIRKATSLVLDGQTLINLEVFANS 673
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVV 610
L+ CVT GKR+ + W L+ +EG ++D L+K + V+
Sbjct: 674 FDGGQEGTLFQLLNRCVTPFGKRMFKQWDF--LRVLEGFE-QIDYTMGLLKETGSGEGVI 730
Query: 611 AQYLRKLPDLERLLGRVKARVQAS----SCIVLPLIG---------KKVLKQQVKVFGSL 657
Q + +PDL L K S S I++P G K+ + + ++ L
Sbjct: 731 GQLVSSMPDLSGHLKYWKTAFDRSKAKDSGILVPEAGVEEDFDVSHDKITEIEYEL-DQL 789
Query: 658 VKGLRIAMDLLMLMHKE-GHIIPSLSRIFK----PPIFDGSDGLDK----FLTQFEAAID 708
+K +R + +++++ G I L K P +D + + + + I
Sbjct: 790 LKRVRKQLGSTAIVYRDNGKEIYQLEVPIKITSVPKSWDQMSATKQAKRFYFPELRSLIR 849
Query: 709 SDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAM 768
+ H + + E F E S W + ++ +D L S A +S
Sbjct: 850 QLQEAQETH--SQIVKEVAGRFYARFDENYSTWLAAVKVVAQLDCLISLAKASSALGHPS 907
Query: 769 HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTL 828
RP+ + + ++ +L+ + L HP L G +PND+ LG ++ P
Sbjct: 908 CRPVFVDEERS----------ILEFQELRHPCMLPNVGDF-IPNDVKLGGEA----PNIN 952
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
LLTG N GKST+LR TC AVI+AQ+GC VPC+ L+ D I +RLGA D I +STF
Sbjct: 953 LLTGANAAGKSTILRMTCTAVIMAQIGCHVPCQSARLTPVDRIMSRLGANDNIFAAQSTF 1012
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
VE +ET +L +AT SLVILDELGRGTS++DG A+A AV + I FATHYH
Sbjct: 1013 FVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYH 1072
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
L EF HP + + M + + ++ + FLY+L G S+G+ A M G+
Sbjct: 1073 SLAAEFEGHPEIAPRRMRI-------HVDEEERRVTFLYKLEEGVAEGSFGMHCASMCGI 1125
Query: 1009 PQKVVEAASHAA 1020
P KVVE A AA
Sbjct: 1126 PNKVVERAEIAA 1137
>gi|390599126|gb|EIN08523.1| DNA mismatch repair protein Msh6 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1174
Score = 355 bits (912), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 306/970 (31%), Positives = 429/970 (44%), Gaps = 192/970 (19%)
Query: 237 LDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKF 296
LDP +D + RP +P YD RTL+IP +A K+ + +KQ+W +K + D +LFF+ GKF
Sbjct: 215 LDP---KDRDGVRPGEPGYDPRTLHIPAKAWKEFTPFEKQFWEIKQNHFDTVLFFQKGKF 271
Query: 297 YELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS 356
ELYE DA IGH+E D K+T + V C VG+ ES + K +A+GYKVGR++Q ET+
Sbjct: 272 LELYEDDARIGHREFDLKLT-NRVKMC-MVGVPESSFNFWAAKFLAKGYKVGRVDQSETA 329
Query: 357 EQAKAR------------HTNSVISRKLVNVVTPSTTVDGT--IGPDAVHLLAIKEGNCG 402
A+ R + ++ R+L V T T VD I +A H ++I+E
Sbjct: 330 LGAEMRLAADKAKGGPKGKADKIVQRELNKVYTNGTLVDAELLIDEEAGHCVSIREHAPD 389
Query: 403 PDNGS-----VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
P+N + +G A +D + + DD L LL Q+ PKE+I+ L
Sbjct: 390 PENPADAKKESTFGVAVLDSSTSEFNLSAFEDDVCRTKLETLLRQLRPKEIIFTKGNLSV 449
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL-----NGYFN-----GSSSPW 507
+ L+ + T V F +K+L +L N + G P
Sbjct: 450 STNRLLK--ATLPEGCLWTSLRDVEGFDYDQTLKELAELYPATGNAMRDEDDPVGGDVP- 506
Query: 508 SKALENVMQHDIGFSALGGLISHLSRLMLD-DVL--RNGDILPYKVYRDCLRMDGQTL-- 562
+A+ ++ ALG LI +L +L +D D+L +N +I L +DGQTL
Sbjct: 507 -EAIRDMYASKPAIEALGSLIWYLRQLNIDKDILSMKNFNIYDPMKRGQGLVLDGQTLAH 565
Query: 563 -----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
L C+T GKRL R W+C PLK VE IN RLD V+ L+ N
Sbjct: 566 IEVLRNSDGTEDGSLLKLLGRCITPFGKRLFRIWLCMPLKRVEDINARLDAVQDLLDNPS 625
Query: 606 VVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAM 665
+ + + LPDLER++ +R+ A++C V + KVL + F L GL
Sbjct: 626 FEQMFTELAKGLPDLERIV----SRIHANNCTVKDFL--KVL----QAFKKLSNGLSSLA 675
Query: 666 DLLM---------LMHKEGHIIPSLSRI---FKPPI--------FDGSD----------- 694
D+ L+ + P+L + FK P DG D
Sbjct: 676 DVAAEFDSKMITGLLRSAPDLTPNLKNVQSMFKKPAEGSGELEPMDGKDEEYDNVMSEIA 735
Query: 695 ----GLDKFLTQFEAAIDSDF-------------------------PDYQNHDVTDLDAE 725
L+K L Q E + +D + H T A
Sbjct: 736 RLEKALEKKLKQLEDEVGTDLTYWHSALGTKDIYLVQTKASFKNIPKQWTKHGATKAAAR 795
Query: 726 --------TLSILIE---------------LFIEKASQ---WSEVIHAISCIDVLRSFAV 759
T+ L E LF E + W I ++ +D L S A
Sbjct: 796 WTVPALAGTIRALKEARENRNTAIKQFKNRLFAEFDADRGVWLRAIRVLAELDCLFSLA- 854
Query: 760 TASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG--GLPVPNDILLG 817
SS A+ P+ P+ V D + + L HP L + G +PND+ LG
Sbjct: 855 ---KSSTALGEPICRPE----LVEGD--AAFVDFEELRHPALLASSSLKGDFIPNDVRLG 905
Query: 818 EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA 877
D + R +LLT N GKST +R T VI+AQLG VP L D I TR+GA
Sbjct: 906 GD----VGRIVLLTASN-SGKSTAMRMTAAGVIMAQLGMMVPARSAKLCPVDAILTRMGA 960
Query: 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI 937
D + + STF VE E+ +L++AT SLVILDELGRGTST+DG AIA AV +L
Sbjct: 961 YDNMFSNASTFKVELDESCKILREATPKSLVILDELGRGTSTYDGMAIAGAVLHELATHT 1020
Query: 938 NCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPES 997
FATHY LT +FA HP++ HMA QELVFLY+L G S
Sbjct: 1021 LALSFFATHYGSLTDDFAYHPNIRNMHMATMVDDEQ-------QELVFLYKLVDGIASSS 1073
Query: 998 YGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+G VA +AGVP VV+ A+ + + E ++ ++ S SRV
Sbjct: 1074 FGTHVAKLAGVPSDVVQRAAVVSEDFARQFKEKLANNVRKKRNGS------------SRV 1121
Query: 1058 DCNSDDDDAY 1067
N D AY
Sbjct: 1122 PLNVQSDFAY 1131
>gi|388851859|emb|CCF54453.1| related to MSH6-DNA mismatch repair protein [Ustilago hordei]
Length = 1313
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 281/927 (30%), Positives = 420/927 (45%), Gaps = 142/927 (15%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD + RP D YD RT+YIP A K + ++Q+W +K + D +LFF+ GKFYELYE
Sbjct: 357 LRDKDGNRPGDGEYDSRTVYIPKSAWKDFTPFEEQFWRIKQNHWDTVLFFQKGKFYELYE 416
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T K + VG+ E+ D K +A GYKVGR++Q ET+
Sbjct: 417 EDALIGHREFDLKLT--DRVKMKMVGVPEASFDIFAAKFLALGYKVGRVDQTETAVAKGM 474
Query: 362 R-------HTNSVISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYGF 412
R + +++R+L +V+T T VD PD + + ++IKE + NG ++G
Sbjct: 475 RVGERSRGGGSEIVNRELRHVLTSGTIVDAASLPDDLNSYCVSIKESSEAGRNGP-IFGV 533
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
+D A + DD S L LL + KEV++E GL + L+ +A
Sbjct: 534 CTLDAATAEFNLTEFEDDESRTRLETLLRSLRLKEVLHEKAGLSAPTLRVLQSTVPTTAQ 593
Query: 473 LE-LTPAMAVTDFLDASEVKKLVQLNGYFNGS--------------SSPWSKALENVMQH 517
+ L P + +F + L +LN FN S + + +++
Sbjct: 594 ITMLKPGV---EFFEPDTT--LRKLNALFNPEVDADARVESLDPVDPSLLPEGIASMVDK 648
Query: 518 DIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCLRMDGQTL------------ 562
G SALGG++ +L++L LD L RN +I CL ++ Q+L
Sbjct: 649 PCGMSALGGMLCYLAQLNLDRDLCSSRNFNIFDPLRQDKCLVLNAQSLTHLNVLQNDEGT 708
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L+ CVT GKRL + W+ PL + I R D VE L+KN + +
Sbjct: 709 DEGTLHRLLNRCVTPFGKRLFKIWLVAPLAAADAIRARQDAVEDLLKNQGFGDEFETFGK 768
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLR---------IAMD 666
LPD+ER++ RV+ A C P VLK + F V+ LR + D
Sbjct: 769 ALPDIERIVPRVR----AGKC--RPRDFTAVLK-AIACFEKAVRQLRAQCKDFETQVIDD 821
Query: 667 LLMLMHKEGHIIPSLSRIFK-------PPI---FDGSDGLDKFLTQFEAAIDSDFPDYQN 716
LL + + L FK PI F+ D + + + EA ++S+ Y+
Sbjct: 822 LLQSIPSVSSMARDLQSSFKVAEDGSFTPIEGAFEPYDRAEVAIAEVEAQLESEIESYRQ 881
Query: 717 HDVTDLDA-----------ETLSILIELFIEKASQWSEVI--------HAISCIDVLRSF 757
L A + I + + + S W+++ ++ D+++
Sbjct: 882 Q--LKLTAAKCAWKHLGTKDIFQIEVPISTKVPSNWTKLSGTKDRNRWYSPKVRDLVQDI 939
Query: 758 AVTASMSSGAM---HRPLILPQSKNPAVRQDNGGPVLKIKGLWH----PFALGENGGLP- 809
A+ H+ L S+ V V +I L +A+GE P
Sbjct: 940 KEARETRLAALKQFHQSLFASFSEKSDVFLQAVKTVAEIDCLLSLAKASYAIGEPSCRPE 999
Query: 810 -VPNDILLGE-----------DSDDCLPRTLLLTGP----------NMGGKSTLLRATCL 847
V N+ L E D+ + +P + L G NM GKST R +
Sbjct: 1000 LVDNETALLEFEELRHPCIAGDNVEFIPNDIRLGGKNDEVIILTGGNMAGKSTTARTSAT 1059
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVILAQLGC VP +S D I +R+GA D+I STF+VE E + ++ + T SL
Sbjct: 1060 AVILAQLGCRVPAASARISPVDRIASRMGANDQIFRNNSTFMVEMLEASRIINECTPRSL 1119
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VI+DELGRGTSTFDG AIA+AV LV R C F THY L +F S+ V+ +HM
Sbjct: 1120 VIMDELGRGTSTFDGQAIAFAVLHHLVSRTRCLTFFLTHYTNLAYDFDSYSRVSNKHMQV 1179
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+E++F YRL G SYG QVA +AGVP ++ + A+ + K
Sbjct: 1180 LV-------DDAKREVIFTYRLVDGIAESSYGTQVAALAGVPHEICDRAA----VVSKQF 1228
Query: 1028 GESFKSSEQRSEFSSLHEEWLKTIVNV 1054
E+ K S+ S++ L V++
Sbjct: 1229 AEATKVSQAEKNRSAIPLALLSDFVHL 1255
>gi|84784043|gb|ABC61986.1| MSH6-like protein [Trichomonas vaginalis]
Length = 1070
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 261/888 (29%), Positives = 408/888 (45%), Gaps = 152/888 (17%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
+WL +K+RD N++RPD+ YD T+YIP + + QKQ+W++K D ++ + G
Sbjct: 168 DWL-TTKLRDKNKKRPDEEGYDPSTVYIPETVKETFTPFQKQFWDIKENNFDAIVMIRKG 226
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYE++ +DA L K+ L+ GK G+ E + K++ G +V ++EQ+E
Sbjct: 227 KFYEMFSVDAIFARDVL--KLHLTYRGKEPMCGVPEKAFSEWAIKIINAGKRVCKVEQME 284
Query: 355 TS-EQA--KARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNCGPDNGSVV 409
T+ +QA K + I RKLV V + T D + +LL+I+ +
Sbjct: 285 TAIDQANRKGKGAEKAIQRKLVQVYSLGTIDDFEMLESSQPSYLLSIRSSS------RQT 338
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
G VDC+ +G +N+D L L++ P EVIY + E ++ +
Sbjct: 339 AGVCLVDCSTGTFHLGAVNEDD----LADTLIRFEPVEVIYSANNISPEHLAIIKHYCGN 394
Query: 470 SAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS 529
A T + L + + K+ + + +LENV H +ALGG ++
Sbjct: 395 VATRAKTGSETWDSTLAMNTILKIAKWDNV--------PDSLENV--HQDAIAALGGCVA 444
Query: 530 HLSR-------------LMLDDVLRNGDILPYKVYRDCLRMDGQTLY-----LDSCVTSS 571
+L+ LD+ + + L++ G+ + LD C T
Sbjct: 445 YLNEHKIAESLLSLKRFKTLDEAGSSSFLSLDSSALTNLQIIGKDPHCLINILDHCTTPF 504
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
G+R LR WI HPL+ + I R VE LMK +++ L+ +PDLER+L RV +
Sbjct: 505 GRRRLRFWIMHPLRSINQIEERQKAVEELMKPD--FNTLSKELKTIPDLERMLSRVYSN- 561
Query: 632 QASSCIVLPLIG--KKVLKQQVKVFGSLV-----------KGLRIAM---DLLMLMHKEG 675
+ S + + +G KK + K+ G++ KG +A D+L + E
Sbjct: 562 KCSVKVFIDCLGALKKCCQFFTKIEGTVKSPLLANVVPPGKGKSLAKQIDDILAELEVEK 621
Query: 676 HIIPSLSRIFKPPIFDGSDGLD----------------------------------KFLT 701
I S I K +F D +D KF
Sbjct: 622 SI-QSNEFIVKKGVFKDIDDIDEEVSSIEDDLNDILRDIKREVGCKDLSYVNMQSEKFQV 680
Query: 702 QFEAAIDSDFPD-------------YQNHDVTD--------------LDAETLSILIELF 734
Q SD PD Y ++ + L + + I+ F
Sbjct: 681 QIPVKYCSDLPDKYILMSQTKSVRRYHTPEIKEKLKQLDIVENERQKLRSGSQKRFIDEF 740
Query: 735 IEKASQWSEVIHAISCIDVLRSFAVTASM--SSGAMHRPLILPQSKNPAVRQDNGGPVLK 792
+ + W ++ AI+ ID L S A+T+ +SG + +P+ + Q +P + +G +L+
Sbjct: 741 AKNSPIWDSIVDAIADIDCLISLAMTSIRWRASGVLCKPIFV-QKDSP---EAHGQAILQ 796
Query: 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
++ + HP +G P+PNDI D D LL+TGPN GKST R C+++ILA
Sbjct: 797 VEKMNHPCIIG----TPIPNDI----DIHDRF--VLLITGPNASGKSTYARMCCVSIILA 846
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+GC +P ++ D IFTR+GA+DRI G+STF VE +ETA +++ AT DS V+LDE
Sbjct: 847 QIGCMLPAVSAKMTCYDQIFTRIGASDRIFNGQSTFAVESSETARLMKHATSDSFVVLDE 906
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTST DG AIA +V + ++ C L+F THYH L +EF P V ++
Sbjct: 907 LGRGTSTLDGIAIASSVLDFFINKVKCPLVFCTHYHVLAEEFEQFPMV---------RNA 957
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
S Y + L Y L CP S+G +VA + G+P + E A A
Sbjct: 958 SMKYEISNGNLTLAYTLIDKMCPSSFGCRVAKICGLPADLTEEAQKVA 1005
>gi|123479127|ref|XP_001322723.1| MutS domain III family protein [Trichomonas vaginalis G3]
gi|121905574|gb|EAY10500.1| MutS domain III family protein [Trichomonas vaginalis G3]
Length = 1057
Score = 332 bits (851), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 262/891 (29%), Positives = 406/891 (45%), Gaps = 158/891 (17%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
+WL +K+RD N++RPD YD T+YIP + + QKQ+W++K D ++ + G
Sbjct: 155 DWL-TTKLRDKNKKRPDKEGYDPSTVYIPETVKETFTPFQKQFWDIKENNFDAIVMIRKG 213
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYE++ +DA L K+ L+ GK G+ E + K++ G +V ++EQ+E
Sbjct: 214 KFYEMFSVDAIFARDVL--KLHLTYRGKEPMCGVPEKAFSEWAIKIINAGKRVCKVEQME 271
Query: 355 TS-EQA--KARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNCGPDNGSVV 409
T+ +QA K + I RKLV V + T D + +LL+I+ +
Sbjct: 272 TAIDQANRKGKGAEKAIQRKLVQVYSLGTIDDFEMLESSQPSYLLSIRSSS------RQT 325
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
G VDC+ +G +N+D L L++ P EVIY + E ++ +
Sbjct: 326 AGVCLVDCSTGTFHLGAVNEDD----LADTLIRFEPVEVIYSANNISPEHLAIIKHYCGN 381
Query: 470 SAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS 529
A T + L + + K+ + + +LENV H +ALGG ++
Sbjct: 382 VATRAKTGSETWDSTLAMNTILKIAKWDNV--------PDSLENV--HQDAIAALGGCVA 431
Query: 530 HLSR-------------LMLDDVLRNGDILPYKVYRDCLRMDGQTLY-----LDSCVTSS 571
+L+ LD+ + + L++ G+ + LD C T
Sbjct: 432 YLNEHKIAESLLSLKRFKTLDEAGSSSFLSLDSSALTNLQIIGKDPHCLINILDHCTTPF 491
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
G+R LR WI HPL+ + I R VE LMK +++ L+ +PDLER+L +RV
Sbjct: 492 GRRRLRFWIMHPLRSINQIEERQKAVEELMKPD--FNTLSKELKTIPDLERML----SRV 545
Query: 632 QASSCIVLPLIG-----KKVLKQQVKVFGSLV-----------KGLRIAM---DLLMLMH 672
++ C V I KK + K+ G++ KG +A D+L +
Sbjct: 546 YSNKCSVKVFIDCLGALKKCCQFFTKIEGTVKSPLLANVVPPGKGKSLAKQIDDILAELE 605
Query: 673 KEGHIIPSLSRIFKPPIFDGSDGLD----------------------------------K 698
E I S I K +F D +D K
Sbjct: 606 VEKSI-QSNEFIVKKGVFKDIDDIDEEVSSIEDDLNDILRDIKREVGCKDLSYVNMQSEK 664
Query: 699 FLTQFEAAIDSDFPD-------------YQNHDVTD--------------LDAETLSILI 731
F Q SD PD Y ++ + L + + I
Sbjct: 665 FQVQIPVKYCSDLPDKYILMSQTKSVRRYHTPEIKEKLKQLDIVENERQKLRSGSQKRFI 724
Query: 732 ELFIEKASQWSEVIHAISCIDVLRSFAVTASM--SSGAMHRPLILPQSKNPAVRQDNGGP 789
+ F + + W ++ AI+ ID L S A+T+ +SG + +P+ + Q +P + +G
Sbjct: 725 DEFAKNSPIWDSIVDAIADIDCLISLAMTSIRWRASGVLCKPIFV-QKDSP---EAHGQA 780
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+L+++ + HP +G P+PNDI D D LL+TGPN GKST R C+++
Sbjct: 781 ILQVEKMNHPCIIG----TPIPNDI----DIHDRF--VLLITGPNASGKSTYARMCCVSI 830
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
ILAQ+GC +P ++ D IFTR+GA+DRI G+STF VE +ETA +++ AT DS V+
Sbjct: 831 ILAQIGCMLPAVSAKMTCYDQIFTRIGASDRIFNGQSTFAVESSETARLMKHATSDSFVV 890
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST DG AIA +V + ++ C L+F THYH L +EF P V
Sbjct: 891 LDELGRGTSTLDGIAIASSVLDFFINKVKCPLVFCTHYHVLAEEFEQFPMV--------- 941
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ S Y + L Y L CP S+G +VA + G+P + E A A
Sbjct: 942 RNASMKYEISNGNLTLAYTLIDKMCPSSFGCRVAKICGLPADLTEEAQKVA 992
>gi|406981178|gb|EKE02687.1| hypothetical protein ACD_20C00346G0014 [uncultured bacterium]
Length = 863
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 246/884 (27%), Positives = 397/884 (44%), Gaps = 180/884 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY K QY ++LF+++G FYE + DA I K+L+ +T GK +V GI
Sbjct: 23 RQYLETKKQYQGIILFYRMGDFYETFFEDAVIAAKDLEITLTSREGGKLGRVAMAGIPAK 82
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
ID+ + +L+ +G+KV EQ+E QAK ++ R++V V+T T +
Sbjct: 83 AIDNYLSRLIEKGHKVAICEQMEDPSQAKG-----LVDRQVVRVITAGTITE-------T 130
Query: 392 HLLAIKEGN----CGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSP 445
+LL + N + S +G A++D + R+ T++ L L ++SP
Sbjct: 131 NLLESTKNNYLAAVIKTSKSEFFGLAYIDISTGEFRITKATLDQ------LIDELSRISP 184
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL-------DASEVKKLVQLNG 498
E+ L ++A++ F + P + +++ S+ K + ++
Sbjct: 185 SEI------LAPVKKQAIQAFQIVPEEVIDLPEVITSNYSCTKRGYSSFSQEKSVEKIKE 238
Query: 499 YFNGSSSPWSKALENV--MQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
FN +S LE+ H +G A G ++ +L + ++PY + +
Sbjct: 239 VFNVTS------LESFGYPNHTLGIMAAGAIVEYLEETQKQGIPEFDTLIPY-MLTSYVS 291
Query: 557 MDGQT--------------------LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
MD T +D T+ G RLLR WI PLKDV I +R +
Sbjct: 292 MDANTRRNLELVQTVRDNNYKGSLLWAIDKTCTNMGLRLLRKWIQQPLKDVNKIKSRQNA 351
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS--------SCIVLPLIGKKV-- 646
VE L++NS++ + ++ L K D+ERL R+ + S +LP GK +
Sbjct: 352 VEELLENSKLRLEISSLLDKTYDIERLATRISNNTANARDFIALKDSLKLLPEFGKLLSN 411
Query: 647 -----------LKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII-PSLSR---IFKPPIFD 691
+K+++ F S+V+ R + + KEG++I +S K +
Sbjct: 412 AKSPFLSVFAEVKEELVDFSSIVE--RTIAENPPVGLKEGNLIRRGVSEELDYLKELLTG 469
Query: 692 GSDGLDKF-----------------------LTQFEAAIDSDFPDY-------------- 714
G + L KF + A + PDY
Sbjct: 470 GREWLTKFENDEKEKTGVRSLKVGYSKTFGYFIEVTHANTNLVPDYYIRKQTLTNAERYI 529
Query: 715 ----QNHDVTDLDAETLSILIELFI-----EKASQW----SEVIHAISCIDVLRSFAVTA 761
+ H+ L AET SI +E I E A ++ E+ A+ +DVL SFA A
Sbjct: 530 TPELKEHETEVLSAETRSIDLEYQIFSDLREYAKEFVQPMREIAKALCALDVLLSFANVA 589
Query: 762 SMSSGAMHRP-------LILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI 814
+ +P L++ + ++P + + L G + P L GG D+
Sbjct: 590 VEFNYV--KPEIDESYDLLIKEGRHPVIEK------LLPLGKYVPNDLDSKGG-----DV 636
Query: 815 LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR 874
+ C + ++LTGPNM GKST +R L VILAQ+G FVP + + + D IFTR
Sbjct: 637 ---GSQNTC--QFMILTGPNMAGKSTYMRQNALIVILAQIGSFVPAKAAKIGIVDKIFTR 691
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+GA D + TG+STF+VE ETA +L AT SL++LDE+GRGTST+DG AIA++V +V
Sbjct: 692 VGAVDDLSTGQSTFMVEMNETALILNSATDRSLILLDEIGRGTSTYDGVAIAWSVAEYIV 751
Query: 935 ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGAC 994
E I R +FATHYH + +P + + + + E+ FL ++ G
Sbjct: 752 ENIKARTIFATHYHEMNVMCERYPQIANYQVTV---------RENNHEIEFLRQVIPGGT 802
Query: 995 PESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRS 1038
SYG+QVA MAG+P V+ A + M+K ++++ S
Sbjct: 803 NRSYGIQVAKMAGLPNSVISRAENLMSRMQKDYTAKLPNAKKNS 846
>gi|198435135|ref|XP_002126574.1| PREDICTED: similar to MGC85188 protein [Ciona intestinalis]
Length = 1307
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/308 (45%), Positives = 192/308 (62%), Gaps = 15/308 (4%)
Query: 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
A+T+SI+ F + W+ + ++ +DVL SFA + M RP+ILP S
Sbjct: 980 ADTMSIVFREFDKDFEMWNTAVSCLALLDVLSSFAEYSKGDKDEMSRPIILPPSSQ---- 1035
Query: 784 QDNGGPVLKIKGLWHP----FALGENGGLPVPNDILLG-EDSDDCLPRTLLLTGPNMGGK 838
P+L+I+ HP ++ +PND +LG D + P LLLTGPNMGGK
Sbjct: 1036 ---HQPLLEIRSARHPCITKIIFSDDF---IPNDTILGCGDEGEDHPMCLLLTGPNMGGK 1089
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
STL+R L VILAQLGC+VP E C ++ D IFTRLGA+DRIMTGESTF VE +ET S+
Sbjct: 1090 STLMRQVGLVVILAQLGCYVPAESCRMTPCDRIFTRLGASDRIMTGESTFYVELSETYSI 1149
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ AT++SLV+LDELGRGT+T+DG +IAYAV + + CR +F+THYH L ++ A
Sbjct: 1150 LKHATKNSLVLLDELGRGTATYDGTSIAYAVLDNIANHVGCRTIFSTHYHTLVEDLAHSK 1209
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
HV L HM+C + + + + L FLY+L GACP+SYG A++A +P+ VV A
Sbjct: 1210 HVKLGHMSCMVEHDDVDGDVDKETLTFLYKLADGACPKSYGFHAALLADIPESVVTIARR 1269
Query: 1019 AALAMKKS 1026
A M+++
Sbjct: 1270 KAKEMEEN 1277
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 219/461 (47%), Gaps = 71/461 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
++L PSKI+D R+PDDPLYDK +L IP + + K++ + Q+W +KS +V+LFFKV
Sbjct: 323 LDFLHPSKIKDTQGRKPDDPLYDKSSLKIPNDFMTKLTPAMHQWWKLKSTNFNVVLFFKV 382
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA +G KEL G G E + LV +GY V R+EQ
Sbjct: 383 GKFYELYHMDAVVGVKELGLTYM---KGNFAHSGFPEVAFGRYADTLVQKGYTVARVEQT 439
Query: 354 ETSEQAKAR-------HTNSVISRKLVNVVTPSTTVD-----GTIGPDAVHLLAIKEG-- 399
ET EQ + R + R++ V T T V G+ ++ LL+I E
Sbjct: 440 ETPEQNQQRIRGKSLPKHEKTLRREICRVTTKGTQVHNMWQGGSKHHESDFLLSISERVV 499
Query: 400 NCGPDNGSVV--YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
N +GSV +G FVD +G DD C+ L +L SP +V++E L
Sbjct: 500 NRNESSGSVCREFGVCFVDTTVGVFHLGQFTDDRHCSRLCTMLAHHSPSQVLFERGKLSN 559
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWSKALENVMQ 516
E K LR G +++ P + + F DA + K + YF + + W L+ ++
Sbjct: 560 ELNKILR---TGLSSILQNPLVPGSQFWDAPKTLKTLLNEKYFVKENDNVWPPTLKCMLS 616
Query: 517 ------------HDIGFSALGGLISHLSRLMLD--------------DVLRNGDIL---P 547
+++ SALG + +L + ++D V + D+
Sbjct: 617 DTDALGLSPKLGYELALSALGACVYYLKKCLIDYEILSMRQFHIYNATVEKTADVKVKDN 676
Query: 548 YKVYRDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVE 588
+ + + +D TL LD+C T GKRLL+ W+C P + +
Sbjct: 677 FATGNEKMILDSVTLSNLEIIYNSKGEREGTLLERLDNCRTPFGKRLLKQWLCLPPCNPD 736
Query: 589 GINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
IN+RLD V+ +M N++++ + +RK+PDLER+L + +
Sbjct: 737 VINDRLDAVDDIMSNNDLLSPLFSSMRKMPDLERMLSNIHS 777
>gi|171679972|ref|XP_001904932.1| hypothetical protein [Podospora anserina S mat+]
gi|170939612|emb|CAP64839.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/433 (35%), Positives = 238/433 (54%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D N++ P DP +D ++YIPP A K+ SA +KQYW++K D ++FFK
Sbjct: 293 RYPWL--ANILDGNKKPPTDPEFDPTSIYIPPAAEKQFSAFEKQYWDIKKNLWDTVVFFK 350
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+G+KV R++Q
Sbjct: 351 KGKFYELYENDATIGHQLFDLKMT--DRVNMRMVGVPESSLDMWVNQFVAKGFKVARVDQ 408
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ AKA+ + +I R+L ++T T VDG++ D A + AIKE
Sbjct: 409 MESALGKEMRERDAKAKKADKIIRRELACILTAGTLVDGSMLQDDMATYCAAIKESVV-- 466
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+G +G AFVD A + + DD + Q P+E++ E L +A + L
Sbjct: 467 -DGKPCFGIAFVDAATGQFLISEFEDDVDLTKFETFVAQTCPRELVLEKSRLSTKALRIL 525
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP---WSKALENVMQHDI 519
+ +A + L P T+F DA ++ ++ NGYF+ + + W + LE V + D+
Sbjct: 526 KNNTAPTTIWNYLKPG---TEFWDAETSRRELECNGYFSNADNQEEVWPEKLEKVKEKDL 582
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SALGGL+ +L L L+ +L G+ PY ++R+ L +DGQTL
Sbjct: 583 LMSALGGLVHYLRFLKLERSLLSQGNFEPYNPIHRNGTLILDGQTLINLEIFSNTANGGV 642
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+CHPL +++ IN RLD V+ L + + + ++ K
Sbjct: 643 EGTLFNLLNRCITPFGKRLFRQWVCHPLCNIQKINERLDAVDMLSNDKSALAEFSSHMSK 702
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ R+ A
Sbjct: 703 MPDLERLISRIHA 715
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 153/297 (51%), Gaps = 39/297 (13%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I IS +D L S A SS A+ P P+ D+ VL + L HP
Sbjct: 899 WLQAIRIISQLDCLMSLA----KSSLALGLPSCRPEF------VDDERSVLHFEELRHPC 948
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR----------------- 843
+ +PNDI LG + + LLTG N GKST+LR
Sbjct: 949 MINRVDDF-IPNDIHLGGEQ----AKINLLTGANAAGKSTVLRMVSSLLNILLCSTANIF 1003
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
TC AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1004 QTCTAVIMAQIGCYVPAVSAKLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILAEAT 1063
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1064 SRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAR 1123
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + G++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1124 RMQI-------HVDGGNRRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIEEAEVAA 1173
>gi|429849425|gb|ELA24817.1| DNA mismatch repair protein msh6 [Colletotrichum gloeosporioides
Nara gc5]
Length = 1294
Score = 265 bits (678), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 183/542 (33%), Positives = 269/542 (49%), Gaps = 64/542 (11%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
+++ WL + I+D N+ P DP YD ++YIPP A K S +KQYW +K + D ++FF
Sbjct: 373 ARYPWL--ANIQDINKNSPGDPEYDPSSVYIPPGAWNKFSPFEKQYWEIKQKLWDTVVFF 430
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
K GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++
Sbjct: 431 KKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVD 488
Query: 352 QLETS----------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
Q+E++ AKA+ + +I R+L V+T T VDG++ D A IKE
Sbjct: 489 QMESALGKEMRERGDTSAKAKKADKIIRRELACVLTGGTLVDGSMLQDDLATFCACIKES 548
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+GS +G FVDCA + ++ DDA + Q SP+E+I E + +
Sbjct: 549 VI---DGSPAFGITFVDCATGQFFISEFEDDADLTKFETFVAQTSPRELILEKSRI---S 602
Query: 460 QKALRKFSAGSAALE----LTPAMAVTDFLDASEVKKLVQLNGYF--NGSSSPWSKALEN 513
KALR ++ + L PA T+FLDA ++ + GYF W AL
Sbjct: 603 TKALRILKNNTSPMTIWNYLKPA---TEFLDADMSRREISSGGYFANEDGEETWPDALAQ 659
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQTL-------- 562
D+ S+LGGLI +L L ++ +L G+ Y R L +DGQTL
Sbjct: 660 AKDKDLLMSSLGGLIHYLKFLKIEGSLLSQGNFEWYTPIRRNGTLILDGQTLINLEIFAN 719
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ CVT GKRL R W+CHPL D++ IN RLD V+ L + V
Sbjct: 720 TVNGGPEGTLFTLLNRCVTPFGKRLFRQWVCHPLCDIKRINERLDAVDMLNSDRSVREQF 779
Query: 611 AQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
+ + K+PDLERL+ R+ A + V L G + ++ + + G+ G + LL
Sbjct: 780 SSQMTKMPDLERLISRIHATLCKPEDFVRVLEGFEQIEYTMGLLGAFGGGNGLIDRLLAS 839
Query: 671 MHKEGHIIPSLSRI--FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLS 728
M P+L+ + FD D+ L E I+ DF + Q+ + ++ E S
Sbjct: 840 M-------PNLNEPLSYWKTAFDRKKARDEKLLIPERGIEEDFDNSQDR-IEEIKEELQS 891
Query: 729 IL 730
+L
Sbjct: 892 LL 893
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 162/296 (54%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + + F WS+ I IS +D L V+ S +S ++ P P+ V +
Sbjct: 966 EVATRFFQRFDADYDTWSQSIRIISQLDCL----VSLSKASSSLGEPSCRPE----FVDE 1017
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D V++ + L HP L +PND+ LG DS + LLTG N GKST+LR
Sbjct: 1018 DRS--VVEFEELRHPCMLNTVSDF-IPNDVKLGGDS----AKINLLTGANAAGKSTVLRM 1070
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1071 SCVAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILSEATP 1130
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + + C FATHYH L EF +HP + +
Sbjct: 1131 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHVGCVGFFATHYHSLATEFENHPEIVPRR 1190
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + ++ + FLY+L G S+G+ A M G+ +V+E A AA
Sbjct: 1191 MQI-------HVDEEERRVTFLYKLEEGVAEGSFGMHCAAMCGISNRVIERAEVAA 1239
>gi|317131677|ref|YP_004090991.1| DNA mismatch repair protein MutS [Ethanoligenens harbinense YUAN-3]
gi|315469656|gb|ADU26260.1| DNA mismatch repair protein MutS [Ethanoligenens harbinense YUAN-3]
Length = 871
Score = 265 bits (677), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 241/854 (28%), Positives = 383/854 (44%), Gaps = 160/854 (18%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ M+ +QY VK Q+ D +LFF++G FYE++ DA + +EL+ +T G +
Sbjct: 1 MADMTPMMRQYMAVKEQHKDEILFFRLGDFYEMFFDDARLASRELELTLTGKDCGLDERA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ + +LV +GYKV EQ E + AK ++ R++V VVTP T ++
Sbjct: 61 PMCGVPYHSCENYIARLVEKGYKVAICEQAEDPKLAKG-----LVKREIVRVVTPGTVIE 115
Query: 384 GTIGPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
G++ ++ +L A+ C D + G F D + + + L L
Sbjct: 116 GSMLDESRNNYLAAV----CVRDGQA---GVVFADVSTGEAHATLLAGEELDVKLTGELG 168
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ +P+EV++ L + + G++ VT + + + L F
Sbjct: 169 RFAPREVLFNGGSLALAGVERFARERLGAS---------VTQPQEEAFSPDVAPLCAQFG 219
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC--LRMD- 558
P + ALE + + AL L+++L + + + R + VY D +R+D
Sbjct: 220 ---KPDAAALE-LDGKEPAVRALNALLAYLRQTQITGLERLNQL---DVYSDAQFMRLDL 272
Query: 559 ------------------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
G L+ LD T+ GKRLLR+WI PL I RL V+
Sbjct: 273 STRRNLELCETLRGREKRGTLLWVLDRTKTAMGKRLLRAWIEQPLLHPGPITRRLAAVDE 332
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV--------KARVQASSCIVLPLIGKKVLKQQV 651
L ++ + V + L + DLERL+ R+ + R A + LP + ++V +
Sbjct: 333 LFSDAVLREDVMEILDGVHDLERLMTRIVYGTANARELRALAETIGRLPGLKERVAPCKA 392
Query: 652 KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS----RIFKPPIFDGSDGLDK-------FL 700
++ + + + DL L+ K P +S + +P D L + FL
Sbjct: 393 RLLSDIARNIDPLPDLFELITKAVEEDPPVSVREGGLIRPGYHAEIDSLREIMRGGKGFL 452
Query: 701 TQFEA-------------------------------AIDSDF---------PDYQNHDVT 720
+ EA + D+ Y ++
Sbjct: 453 AEVEAREKEKTGIKNLKIGYNRVFGYYIEVTKSNIAQVPEDYIRKQTLTNCERYITQELK 512
Query: 721 DLDAETLS-------ILIELFIEKASQWSEVIH-------AISCIDVLRSFAVTASMSSG 766
+L+ L + ++F Q +E +H A++ +DVL SFA A+M
Sbjct: 513 ELEGRVLGAQERVVQLEYDVFDGVRRQVAEQLHRIQSTAGALAGLDVLCSFAQAAAM--- 569
Query: 767 AMHRPLILPQSKNPAVRQDNG-GPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCL 824
N R D G + IK HP G+P VPND L D D
Sbjct: 570 ------------NRYCRPDLGVDGRISIKDGRHPVVEAILSGVPFVPNDTELDMDGD--- 614
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
R ++TGPNM GKST +R L ++AQ+G FVP + + D+IFTR+GA+D + +G
Sbjct: 615 -RVAIITGPNMAGKSTYMRQVALITLMAQIGSFVPASAAHIGVVDSIFTRVGASDDLASG 673
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLL 942
+STF+VE TE AS+L+ ATQ+SLV+LDE+GRGTSTFDG +IA AV + ++R + L
Sbjct: 674 QSTFMVEMTEVASILENATQNSLVLLDEIGRGTSTFDGMSIARAVVEHVADLKRCGAKTL 733
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
FATHYH LT L+ ++ S K +EL FL R+ G +SYG++V
Sbjct: 734 FATHYHELT---------VLEDQLSGVRNYSVAVKKHGEELTFLRRIIPGGADDSYGIEV 784
Query: 1003 AVMAGVPQKVVEAA 1016
A +AG+P +VV A
Sbjct: 785 AKLAGIPARVVTRA 798
>gi|149174706|ref|ZP_01853331.1| DNA mismatch repair protein [Planctomyces maris DSM 8797]
gi|148846400|gb|EDL60738.1| DNA mismatch repair protein [Planctomyces maris DSM 8797]
Length = 866
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 244/850 (28%), Positives = 380/850 (44%), Gaps = 144/850 (16%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ-- 325
KK++ ++Y VK Q LL F++G FYEL+ DAEI + L ITL+ K
Sbjct: 6 KKLTPMMERYLEVKRQNPGTLLLFRMGDFYELFHEDAEIAARILG--ITLTSRDKTSSNP 63
Query: 326 ---VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-T 381
G +D+ + KL+ GY+ +Q+E ++AK ++ R++ VVTP T T
Sbjct: 64 IPMAGFPHHSLDNYLYKLIHAGYRASICDQVEDPKKAKG-----MVKREVTRVVTPGTLT 118
Query: 382 VDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGT-INDDASCAALGALL 440
D + P + LA S+ +G + + A L + G + + + L L
Sbjct: 119 DDALLDPHENNFLA-----------SIYFGKSNIGLAWLELSTGRFLTSNTTAEHLVDEL 167
Query: 441 MQVSPKEVIY-ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
++ P E I+ E + A L + LD K L N
Sbjct: 168 ARIHPAECIFAEGNTALQNAVGHLDTMLTERPPWSFAEGESEKRLLDHFGTKTLEGFNLE 227
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLS---------RLMLDDVLRNGDILPYKV 550
S + AL +Q D SA I H++ RL++D+ R L +
Sbjct: 228 AGTPSITAAGALLEYVQ-DTQKSA----IPHINQIEPYERGDRLLIDEATRRSLELT-RT 281
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
R+ R LD VTS G RLL WI +PL + I RLD VE L +N + V
Sbjct: 282 IREGKREGSLISVLDETVTSMGARLLTDWIANPLTSLSQIERRLDAVEELSQNPVLCTEV 341
Query: 611 AQYLRKLPDLERLL-----GRVKAR---VQASSCIVLPLIGKKVLKQQVKVFGSLVKGL- 661
+ L K DL+RL GR AR A + +LP + K+ ++ ++ SL +
Sbjct: 342 REQLAKTYDLQRLTARIATGRASARDLSFLAQTLALLPKLKAKLSGRKAELLQSLEADID 401
Query: 662 -----------RIAMDLLMLMHKEGHIIPSLS--------------------------RI 684
I D + +++ G I P S RI
Sbjct: 402 LCAEVRSDIETMIIEDPPLTLNEGGVIRPGFSEELDELRSLSKGGKEWIAGYRNEESERI 461
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSDFPDY------------------QNHDVTDLDAET 726
P + G + + + + AA + PD+ + ++ L AE
Sbjct: 462 GIPNLKVGYNKVFGYYLEVSAAHAAKVPDHYIRKQTLKNQERYITPELKEYEEKVLKAED 521
Query: 727 LSILIE--LFIE-------KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
++ +E +F E +A + + ++ IDVL F + + RP + +
Sbjct: 522 RAVELEQSMFDELRERVAKEAPRTQKTAEILAQIDVL--FGLAHLATHAGYTRPEMTEE- 578
Query: 778 KNPAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
PVL I+ HP L +G VPND+LLGE R ++TGPNM
Sbjct: 579 -----------PVLDIRESRHPVLDRLQPSGEF-VPNDVLLGEPYG----RVQIITGPNM 622
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GKST +R L ++AQ+G F+P + +AD IF R+GA+D + G+STF+VE TE
Sbjct: 623 AGKSTYIRQAALLTLMAQIGSFIPASEARIGIADRIFARVGASDELSKGQSTFMVEMTEA 682
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A +L A++ SLVILDE+GRGTST+DG ++A+++ L ++I R LFATHYH LT+
Sbjct: 683 ARILNSASERSLVILDEIGRGTSTYDGISLAWSMTEFLHDKIKARTLFATHYHELTE--- 739
Query: 956 SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEA 1015
Q + A N + + D E+VFL+++ G+ +SYG+ VA +AG+P +V++
Sbjct: 740 -----LTQTLKQASNWNVAVHEQ-DGEIVFLHKIVEGSANKSYGIHVARLAGIPDQVIQR 793
Query: 1016 ASHAALAMKK 1025
A+ ++K
Sbjct: 794 ANQILSTLEK 803
>gi|197301744|ref|ZP_03166814.1| hypothetical protein RUMLAC_00470 [Ruminococcus lactaris ATCC 29176]
gi|197299184|gb|EDY33714.1| DNA mismatch repair protein MutS [Ruminococcus lactaris ATCC 29176]
Length = 877
Score = 264 bits (674), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 269/940 (28%), Positives = 422/940 (44%), Gaps = 198/940 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ------VGI 328
KQY KSQY D +LF+++G FYE++ DA +EL+ ITL+G C Q G+
Sbjct: 3 KQYMETKSQYQDCILFYRLGDFYEMFFEDALTASRELE--ITLTG-KNCGQEERAPMCGV 59
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
++ + +LVA+GYKV EQ+E +QAK ++ R++V +VTP T +D
Sbjct: 60 PYHAVEGYLNRLVAKGYKVAICEQVEDPKQAKG-----IVKREVVRIVTPGTNLDTQ--- 111
Query: 389 DAVHLLAIKEGNCGPDNGSVV--------YGFAFVDCAALRVWVGTINDDASCAALGALL 440
A+ E N ++ YG + D + +V + D G+ L
Sbjct: 112 ------ALDETK----NNYIMCIVYIADRYGVSIADISTGDYFVTELPD-------GSRL 154
Query: 441 M----QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT-------DFLDASE 489
M + SP E+I C EA + +G + + +T F DA
Sbjct: 155 MDEIYKFSPSEII------CNEAF-----YMSGMDLDTMKEKLGITIYSLDSWYFDDAMC 203
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
+KL++ +F SS LE+ +D G + G L+++L + + + PY
Sbjct: 204 REKLLE---HFKVSSFA-GLGLED---YDCGVISAGALLTYLLETQKNSLSNLTHLTPY- 255
Query: 550 VYRDCLRMDGQT--------------------LYLDSCVTSSGKRLLRSWICHPLKDVEG 589
V + +D T LD T+ G R LR ++ PL D
Sbjct: 256 VTGKYMMLDSSTRRNLELCETLREKQKRGSLLWVLDKTRTAMGARTLRKFVEQPLIDKNE 315
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA--------RVQASSCIVLPL 641
IN RLD VE L + + + +YL + DLERL+ ++ SS +LP
Sbjct: 316 INRRLDAVEELKEQAISREEIREYLSPVYDLERLITKITYGSANPRDLTAFKSSLEMLPP 375
Query: 642 IGKKVLKQQVKVFGSLVKGLRIAMDLLMLM-----------HKEGHII-----PSLSRIF 685
I + + +V + + + L DL L+ KEG+II + ++
Sbjct: 376 IRYILEEMKVPLLQEIYEDLDALEDLCDLVTKAIREEPPIAMKEGNIIREGYNEEVDKLR 435
Query: 686 KPPIFDGSDGLDK-----------------------FLTQFEAAIDSDFPDYQNHDVTDL 722
+ DG D L K + + + PDY T
Sbjct: 436 RAK-SDGKDWLAKLEEDEREKTGIKNLKIKYNKVFGYYLEVTNSYKDLVPDYYTRKQTLA 494
Query: 723 DAE--------TLSILI-----ELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMH 769
+AE L +I +L+ + +SEV I+ V R +++ +
Sbjct: 495 NAERYITPELKELEDMILGAEDKLYALEYELYSEVRETIAA-QVERIQKTAKAVAGLDVF 553
Query: 770 RPLILPQSKNPAVR-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS--DDCLPR 826
L L +N VR + N ++ IK HP +PND+ + D+ DD R
Sbjct: 554 TSLALVAERNHYVRPKINEKGIIDIKEGRHPVVEK-----MIPNDMFISNDTYLDDKKNR 608
Query: 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGES 886
++TGPNM GKST +R T L ++AQ+GCFVP + + L+D IFTR+GA+D + +G+S
Sbjct: 609 ISIITGPNMAGKSTYMRQTALIALMAQVGCFVPAQSANIGLSDRIFTRVGASDDLASGQS 668
Query: 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFA 944
TF+VE TE A++L+ AT SL+ILDE+GRGTSTFDG +IA+AV + + + + LFA
Sbjct: 669 TFMVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVVEYISDSKLLGAKTLFA 728
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT+ +V +A KGD ++VFL ++ G +SYG+QVA
Sbjct: 729 THYHELTELEGKIENVNNYCIAVK--------EKGD-DIVFLRKIVKGGADKSYGIQVAK 779
Query: 1005 MAGVP-------QKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+AGVP +++VE S + + S + + + ++ S ++E I +S
Sbjct: 780 LAGVPDLVINRAKEIVEELSDEDITSRVSEIAAREHTAKKKGRSKKYDEV--DIAQMSLF 837
Query: 1058 DCNSDDD----------------DAYDTLFCLWHELKNSY 1081
D DDD DA +TL+ L ++LKN +
Sbjct: 838 DTVKDDDVLNELKEIDVTNLTPIDALNTLYRLQNKLKNRW 877
>gi|342876461|gb|EGU78072.1| hypothetical protein FOXB_11416 [Fusarium oxysporum Fo5176]
Length = 1228
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 175/521 (33%), Positives = 262/521 (50%), Gaps = 55/521 (10%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
D ++ WL + I D ++R+PD P YDKRT+YIPP A +K S + QYW +K D +
Sbjct: 306 DPDQRYPWL--ANIMDKDKRKPDHPEYDKRTIYIPPAAWQKFSPFETQYWKIKQNLWDTI 363
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKFYELYE DA +GH+E D+K+T R VG+ ES +D V + +A+ YKV
Sbjct: 364 VFFKKGKFYELYENDATVGHQEFDFKMT--DRVNMRMVGVPESSLDHWVNQFIAKQYKVA 421
Query: 349 RIEQLETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
R++Q+ET+ Q K++ + VI+R+L ++T T VDG++ D A + +AIKE
Sbjct: 422 RVDQMETNLGKEMRERQDKSKKADKVITRELACILTAGTLVDGSMLQDDMASYCVAIKES 481
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+ +G AF D A R ++ T DD L+ Q P+E++ E L +A
Sbjct: 482 VV---DDLPAFGIAFADTATGRFYLSTFVDDVDLTKFETLIAQTGPRELLLEKSRLSTKA 538
Query: 460 QKALR-KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP---WSKALENVM 515
+ L+ S + L P +F +A + ++ + GYF + W + L+++
Sbjct: 539 LRILKNNTSPTTIWTHLKPG---DEFWEADKTRRELDCGGYFKAEDADEEVWPEILQSLR 595
Query: 516 QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL---------- 562
D+ SA G LIS+L L L+ +L G+ Y + L +DGQTL
Sbjct: 596 DDDLAMSATGALISYLRFLKLERPLLSQGNFELYNPIQKNGTLILDGQTLINLEVFSNSV 655
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
L+ CVT GKRL RSW+ HPL +++ IN RLD VE L + V A
Sbjct: 656 NGGSEGTLFSLLNKCVTPFGKRLFRSWVAHPLCNIDRINERLDAVEMLNADQTVREQFAS 715
Query: 613 YLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMH 672
L K+PDLERL+ R+ A V L G + ++ + + G+ G + L+ M
Sbjct: 716 QLVKMPDLERLISRIHAGACKPEDFVKVLEGFEQIEYTMSLLGAYKGGNGLVDRLISSM- 774
Query: 673 KEGHIIPSLSR--IFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
P+L + FD S D+ L E I+ DF
Sbjct: 775 ------PNLDEPLSYWRSAFDRSKARDEKLLIPERGIEEDF 809
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S + F W + I IS +D L S A +S ++ +P P+
Sbjct: 900 EVASRFFQKFDVDYETWLQAIKIISQLDCLVSLA----KASASLGQPSCRPEF------V 949
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D + + L HP + +PNDI LG D + LLTG N GKST+LR
Sbjct: 950 DEERSTVDFQELRHPCMMNTVDDF-IPNDIKLGGDQ----AKINLLTGANAAGKSTVLRM 1004
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1005 SCVAVIMAQIGCYVPATFARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1064
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1065 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGCVGYFATHYHSLATEFENHPEIRARR 1124
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + ++ + FLY+L G S+G+ A M G+ +V++ A AA
Sbjct: 1125 MQI-------HVDDEERRVTFLYKLEDGVAEGSFGMHCAAMCGISSRVIDRAEVAA 1173
>gi|261367034|ref|ZP_05979917.1| DNA mismatch repair protein MutS [Subdoligranulum variabile DSM
15176]
gi|282571152|gb|EFB76687.1| DNA mismatch repair protein MutS [Subdoligranulum variabile DSM
15176]
Length = 872
Score = 262 bits (670), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 246/860 (28%), Positives = 383/860 (44%), Gaps = 157/860 (18%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A + +S +QY+ +K Q+ + +LF++VG FYE++ DA +EL+ +T GK +
Sbjct: 2 AEQAVSPMMQQYFEIKKQHPNEILFYRVGDFYEMFYDDALTASRELELTLTGKNCGKEER 61
Query: 326 V---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
G+ + V +L+A+GYKV EQ+E AK ++ R ++ VVTP T +
Sbjct: 62 APMCGVPFHSYETYVARLIAKGYKVAICEQMEDPALAKG-----LVKRDIIRVVTPGTVI 116
Query: 383 DGTIGPDAVHLLAIKEGN------CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
+ + +LA + N C G G F D + +N + A+
Sbjct: 117 ESS-------MLAEDKNNYLCSIYCKRRRGHWRAGICFADISTGEARATELNAEKIGGAI 169
Query: 437 GALLMQVSPKEVIYENRGLC------KEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
L + P E++ +C K+ +++ + SA +EL D L S +
Sbjct: 170 ITELCRYMPSEIL-----ICPPMLDFKDVTGYIKQHT--SALVELREEACYKDALLESTM 222
Query: 491 K-----KLVQLNGYFNGSSSPWSKA-----LENVMQHDIGFSALGGLISHLSRLMLDDVL 540
+ GY + P++ A L+ +H + + + L V
Sbjct: 223 AGQFGPEWRTTLGYDEDALVPYAVAALLNYLQETQKHGLERIKTVDNYADAQYMRLSPVT 282
Query: 541 RNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
R ++ + R + LD TS GKRLLRSWI PL D E IN RL V+ L
Sbjct: 283 R-ANLELTETMRGREKRGTLLWVLDKTETSMGKRLLRSWIEQPLVDAEAINARLSAVQAL 341
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV---------------------KARVQASSCIVL 639
+ + + L + D+ERL R+ + + QAS+C
Sbjct: 342 YTANIARADLKEALSHVFDIERLTTRILYGSATPREVKALGDTCARLPEVKTQASACGA- 400
Query: 640 PLIGKKVLKQQVKVFGSLVKGLRIAM-----------------------DLLMLMH---- 672
PL+ + L Q+ L++ + A+ +L +MH
Sbjct: 401 PLLTQ--LADQIDPLDDLLQKITTALVDDPPATLKDGGAIRAGYNSEVDELRDIMHGGKG 458
Query: 673 ---------KEGHIIPSL--------------SRIFKPPIFDGSDGLDKFLTQFEAAIDS 709
+E IP L SR + + D S + LT E I
Sbjct: 459 YLANLETKLREETGIPKLKIGFNKVFGYYIEVSRSYTDSVPD-SFTRKQTLTTGERYITP 517
Query: 710 DFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
+ + +N + + L + +LF + S+ S I A++ +DVL FA A
Sbjct: 518 ELKELENK-ILGANERLLVLEHQLFADLLSEISAQIVRIQRTALAVAQLDVLAGFAEVAL 576
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSD 821
++ + P V Q V++IK HP G L VPND LL E +
Sbjct: 577 QNNYVL-----------PVVDQSG---VIEIKEGRHPVIEQMLKGTLFVPNDTLLDEGEN 622
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
R LL+TGPNM GKST +R L ++AQ+GCFVP + + D IFTR+GA+D +
Sbjct: 623 ----RMLLITGPNMAGKSTYMRQNALIALMAQIGCFVPAASAHIGVVDAIFTRVGASDDL 678
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
G+STF+VE TE A +L+ A+++SLVILDE+GRGTSTFDG +IA AV + + I C+
Sbjct: 679 AAGQSTFMVEMTEVAEILRHASKNSLVILDEIGRGTSTFDGMSIARAVVEYICDNIGCKT 738
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LFATHYH LT ++ K+ + K +++ FL R+ +G +SYG++
Sbjct: 739 LFATHYHELT---------SMDQDIYGVKNYNIAVKKRGEDITFLRRIVAGPADDSYGIE 789
Query: 1002 VAVMAGVPQKVVEAASHAAL 1021
VA +AG+P V + A HA L
Sbjct: 790 VAKLAGLPSSVTKRA-HAVL 808
>gi|326914905|ref|XP_003203763.1| PREDICTED: DNA mismatch repair protein Msh6-like [Meleagris
gallopavo]
Length = 1289
Score = 262 bits (669), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 187/290 (64%), Gaps = 12/290 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + + W + I+ +DVL S A + G + RP+IL + D+ PVL++
Sbjct: 969 FDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVIL-------LPVDSAPPVLEL 1021
Query: 794 KGLWHPFALGENGGLP-VPNDILLGEDSDD--CLPRTLLLTGPNMGGKSTLLRATCLAVI 850
K HP G +PNDI++G +D +L+TGPNMGGKSTL+R L VI
Sbjct: 1022 KNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVI 1081
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQLGC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ET+S+LQ AT+ SLV++
Sbjct: 1082 MAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLV 1141
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+TFDG AIA AV R+L E I CR LF+THYH L ++++ V L HMAC +
Sbjct: 1142 DELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVE 1201
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ SE+ S+ + + FLY+ GACP+SYG A +A +P++V++ A
Sbjct: 1202 NESEDPSQ--ETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKA 1249
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 142/464 (30%), Positives = 221/464 (47%), Gaps = 78/464 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DA+RRR +DP YD TLY+P + L K + +++W +KSQ D ++ +K
Sbjct: 300 KLEWLQEGKKKDAHRRRQNDPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYK 359
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL + G G E+ LV +GYK+ R+EQ
Sbjct: 360 VGKFYELYHMDAVIGVNELG---LIFMKGSWAHSGFPETAFGRFSAILVQKGYKIARVEQ 416
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEG 399
ET E +AR + V+ R++ ++T T I D +LL +KE
Sbjct: 417 TETPEMMEARCKATAHPTRFDKVVRREICRILTKGTQTYSIIDCDPSENHNKYLLCVKEK 476
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+G VYG FVD + + +VG +DD C+ L+ +P +V++E L +
Sbjct: 477 E--DSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDT 534
Query: 460 QKALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYFNGSSSPWSK-ALENVMQ- 516
QK L+ GS + + + + F AS+ K++ YF + +P + L +V++
Sbjct: 535 QKILK----GSLISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNPENGCVLPSVIKS 590
Query: 517 ---------------HDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC------- 554
++ SALGG++ +L + ++D L + V D
Sbjct: 591 LTSESDSLGLTPGENSELALSALGGIVFYLKKCLIDQELLSLANFEKYVPVDADNAKTAS 650
Query: 555 -----------LRMDGQTLY--------------------LDSCVTSSGKRLLRSWICHP 583
+ +DG TL +DSC T GKRLL+ W+C P
Sbjct: 651 ASNFFARTDRRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAP 710
Query: 584 LKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L + IN+RLD VE L+ + ++++L+KLPDLERLL ++
Sbjct: 711 LCNPTSINDRLDAVEDLLAVPAKLTEISEHLKKLPDLERLLSKI 754
>gi|312622277|ref|YP_004023890.1| DNA mismatch repair protein muts [Caldicellulosiruptor kronotskyensis
2002]
gi|312202744|gb|ADQ46071.1| DNA mismatch repair protein MutS [Caldicellulosiruptor kronotskyensis
2002]
Length = 863
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 238/887 (26%), Positives = 394/887 (44%), Gaps = 159/887 (17%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA + KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK ++ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAKG-----IVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
I + C G + FVD + ++ + +D L + +
Sbjct: 116 DNISTANNFI-------CCISKGRSEFALTFVDVSTGEMYSCLLEED--LQKLVNEIGKY 166
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
SP E++ N + L +F + A + + +F+D + ++++
Sbjct: 167 SPSEILISN------IEDELYEFLKKNCA----SFVQMIEFVDLQKCYEVIENQINVGKI 216
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSR---------LMLD-DVLRNGDILPYKVYRD 553
++ N++++ I + ++ R L +D + RN ++ + R
Sbjct: 217 DERLILSVGNLLKYLIETQKIS--FDYIRRYEFYRVQNYLQIDINTKRNLELTESIIQRS 274
Query: 554 CLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
R + LD TS G RLL+ WI PL DV IN RLD VE L N +++ + +
Sbjct: 275 --RKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSNYSILVQIEEL 332
Query: 614 LRKLPDLERLLGRVKAR-VQASSCI-------VLPLIGKKVLKQQVKVFGSLVKGLRIAM 665
L ++ D+ERL + + V A + VLP + K + ++ + +GL
Sbjct: 333 LSRMYDIERLSSKFAYKNVNAKDLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGLDTLE 392
Query: 666 DLLMLMH-----------KEGHIIP-----------SLSRIFKPPIFDGSD--------- 694
D+ L+ KEG II ++S+ K + +
Sbjct: 393 DIYALIDSSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLTGIK 452
Query: 695 ----GLDKFLTQFEAAIDSDF---PD-------------YQNHDVTDLDAETLSI---LI 731
G +K + S++ PD Y ++ L+ E L LI
Sbjct: 453 NLRIGYNKVFGYYIEVTKSNYSLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLI 512
Query: 732 ELFIEKASQWSEVIHA-----------ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
EL + + + I A I+ +DVL SFA A RP +
Sbjct: 513 ELEYQLFCEIRDRIEAQIERIQKTASNIAILDVLCSFARIAI--DNEYVRPNVYL----- 565
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
G + IK HP G G +PND L D R L++TGPNM GKS
Sbjct: 566 -------GDRIYIKNGRHPVVEKMIGRGNFIPNDTEL----DQAENRVLIITGPNMAGKS 614
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T +R L VI+AQ+GCFVP + + + D IF+R+GA+D I +G+STF+VE +E A++L
Sbjct: 615 TYMRQVALIVIMAQMGCFVPADEAYIGVVDKIFSRIGASDDISSGQSTFMVEMSEVANIL 674
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKEFASH 957
+ AT SL+I DE+GRGTST+DG +IA+AV + + +I + LFATHYH LT+
Sbjct: 675 KNATPKSLIIFDEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTE----- 729
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L+ K+ + + + ++FL ++ G C SYG+ VA +AG+P++V++ A
Sbjct: 730 ----LEERIPGVKNYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAE 785
Query: 1018 HA-------------ALAMKKSIGESFKSSEQRSEFSSLHEEWLKTI 1051
++K I + F +EQ FS EE + I
Sbjct: 786 EILKQLEEADINRKNIRKLRKEIKKEF--TEQIDFFSYKKEEIIDKI 830
>gi|449275264|gb|EMC84167.1| DNA mismatch repair protein Msh6, partial [Columba livia]
Length = 1247
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/296 (44%), Positives = 191/296 (64%), Gaps = 12/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + + W + I+ +DVL S A + G + RP+IL + D+ P L++
Sbjct: 953 FDQNSKDWQTAVECIAVLDVLMSLANYSQDGDGPLCRPVIL-------LPVDSAPPFLEL 1005
Query: 794 KGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRT--LLLTGPNMGGKSTLLRATCLAVI 850
K HP G +PNDI++G ++ +L+TGPNMGGKSTL+R L VI
Sbjct: 1006 KNSRHPCITKTFFGDDFIPNDIVIGSKDEESGSEASCVLVTGPNMGGKSTLMRQAGLLVI 1065
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQLGC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ET+S+LQ AT+ SLV++
Sbjct: 1066 MAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLV 1125
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+TFDG AIA AV ++L ERI CR LF+THYH L ++++ + V L HMAC +
Sbjct: 1126 DELGRGTATFDGTAIASAVVKELAERIRCRTLFSTHYHSLVEDYSHNGAVRLGHMACMVE 1185
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ SE+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K+
Sbjct: 1186 NESEDPSQ--ETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKA 1239
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 163/556 (29%), Positives = 257/556 (46%), Gaps = 97/556 (17%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DA+RRR +DP YD TLY+P + L K + +++W +KSQ D ++ +K
Sbjct: 284 KLEWLQEGKKKDAHRRRQNDPAYDPGTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYK 343
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL I + G G E+ + LV +GYKV R+EQ
Sbjct: 344 VGKFYELYHMDAVIGVNELGL-IFMKGTWA--HSGFPETAFGRFSDVLVQKGYKVARVEQ 400
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEG 399
ET E +AR + V+ R++ ++T T + D + +LL +KE
Sbjct: 401 TETPEMMEARCKSAAHPTKFDKVVRREICRIITKGTQTYSILDCDPSENHSKYLLCVKEK 460
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+G VYG FVD + + +VG +DD C+ L+ +P +V+YE L +
Sbjct: 461 E--ESSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLYEKGNLSVDT 518
Query: 460 QKALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYF-------NGSSSPW---- 507
QK L+ GS + + + F +AS+ K++ YF NG S P
Sbjct: 519 QKILK----GSLVSCFQEGLISGSQFWNASKTLKVLLEEEYFKEKQNSENGCSLPPVIKS 574
Query: 508 ------SKALENVMQHDIGFSALGGLISHLSRLMLD-----------------DVLRNGD 544
S L ++ SALGG + +L + ++D D +
Sbjct: 575 LTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQELLSLANFEEYVPVDIDTAKTIS 634
Query: 545 ILPYKVYRDC-LRMDGQTLY--------------------LDSCVTSSGKRLLRSWICHP 583
+ V D + +DG TL +DSC T GKRLL+ W+C P
Sbjct: 635 SRSFFVKTDQRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAP 694
Query: 584 LKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLI- 642
L + + IN+RLD VE L+ + V+++L+KLPDLERLL ++ + I PL
Sbjct: 695 LCNPKSINDRLDAVEDLLAVPHKMSEVSEHLKKLPDLERLLSKIHS-------IGSPLKS 747
Query: 643 -----GKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLD 697
+ + +++K + A++ +M++ ++ ++ FK S+ L
Sbjct: 748 QNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDVMEEVASDFK------SEVLK 801
Query: 698 KFLTQFEAAIDSDFPD 713
+ +T+ D FPD
Sbjct: 802 QLVTRKAKNPDGRFPD 817
>gi|363731315|ref|XP_419359.3| PREDICTED: DNA mismatch repair protein Msh6 [Gallus gallus]
Length = 1345
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/295 (45%), Positives = 188/295 (63%), Gaps = 12/295 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + + W + I+ +DVL S A + G + RP+IL + D+ P L++
Sbjct: 1025 FDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVIL-------LPVDSAPPFLEL 1077
Query: 794 KGLWHPFALGENGGLP-VPNDILLGEDSDD--CLPRTLLLTGPNMGGKSTLLRATCLAVI 850
K HP G +PNDI++G +D +L+TGPNMGGKSTL+R L VI
Sbjct: 1078 KNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVI 1137
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQLGC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ET+S+LQ AT+ SLV++
Sbjct: 1138 MAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLV 1197
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+TFDG AIA AV R+L E I CR LF+THYH L ++++ V L HMAC +
Sbjct: 1198 DELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVE 1257
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+ SE+ S+ + + FLY+ GACP+SYG A +A +P+++++ A +K
Sbjct: 1258 NESEDPSQ--ETITFLYKFIEGACPKSYGFNAARLADIPEEIIQKGHRKAKEFEK 1310
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/466 (30%), Positives = 222/466 (47%), Gaps = 82/466 (17%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DA+RRR + P YD TLY+P + L K + +++W +KSQ D ++ +K
Sbjct: 356 KLEWLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYK 415
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA G EL + G G E+ LV +GYK+ R+EQ
Sbjct: 416 VGKFYELYHMDAVTGVNELG---LIFMKGSWAHSGFPETAFGRFSAILVQKGYKIARVEQ 472
Query: 353 LETSEQAKAR-----HT---NSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEG 399
ET E +AR HT + V+ R++ ++T T I D +LL +KE
Sbjct: 473 TETPEMMEARCKATAHTTKFDKVVRREICRIITKGTQTYSIIDCDPTENHNKYLLCVKEK 532
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+G VYG FVD + + +VG +DD C+ L+ +P +V++E L +
Sbjct: 533 E--DSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDT 590
Query: 460 QKALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYFNGSSSPWSK-ALENVMQ- 516
QK L+ GS + + + + F AS+ K++ YF + + S L +V++
Sbjct: 591 QKILK----GSLISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVLPSVIKS 646
Query: 517 ---------------HDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY---------- 551
++ SALGG++ +L + ++D L + + ++ Y
Sbjct: 647 LTSESDSLGLTPGENSELALSALGGIVFYLKKCLIDQELLS--LANFEKYIPVDADNAKT 704
Query: 552 --------RDCLRM--DGQTLY--------------------LDSCVTSSGKRLLRSWIC 581
R RM DG TL +DSC T GKRLL+ W+C
Sbjct: 705 VSSSNFFARTDRRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLC 764
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
PL + IN+RLD VE L+ + + ++L+KLPDLERLL ++
Sbjct: 765 APLCNPTSINDRLDAVEDLLAVPAKLTEITEHLKKLPDLERLLSKI 810
>gi|410901537|ref|XP_003964252.1| PREDICTED: DNA mismatch repair protein Msh6-like [Takifugu rubripes]
Length = 1373
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 187/302 (61%), Gaps = 17/302 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + ++ +DVL +F+ + G M RP +LP S + P L+
Sbjct: 1050 FDQNYKDWKTAVECMAVLDVLLAFSRYSQGGDGPMARPEAVLPDS--------DRAPFLE 1101
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG-----EDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
+ G HP G +PNDI +G E+ D +L+TGPNMGGKSTL+R
Sbjct: 1102 LAGSRHPCVTKTFFGDDFIPNDIFIGCLDSREEEGDGDATCVLVTGPNMGGKSTLMRQCG 1161
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L VILAQLGCFVP E + D +FTRLGA+DRIM+GESTF VE +ETAS+L AT+ S
Sbjct: 1162 LVVILAQLGCFVPAERLRFTPVDRVFTRLGASDRIMSGESTFFVELSETASILHHATKHS 1221
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
LV+LDELGRGT+T+DG AIA AV +L ERI CR LF+THYH L +++A +P V L HMA
Sbjct: 1222 LVLLDELGRGTATYDGTAIASAVVNELAERIRCRTLFSTHYHSLVEDYAKNPAVRLGHMA 1281
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
C ++ E+ S+ + + FLY+ SGACP+SYG A +A +P++V++ A ++S
Sbjct: 1282 CMVENECEDPSQ--ETITFLYKFVSGACPKSYGFNAARLANLPEEVIQCGHDKAREFERS 1339
Query: 1027 IG 1028
G
Sbjct: 1340 TG 1341
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 156/507 (30%), Positives = 227/507 (44%), Gaps = 84/507 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL + +D RRR YD TLY+P + L +++ +++W +KS+ D ++F+K
Sbjct: 377 KLEWLRDGRRKDGGRRRQGCEDYDPSTLYVPEDFLNRITPGMRRWWQLKSKMFDTVIFYK 436
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL G G E G + LV +GYKV R+EQ
Sbjct: 437 VGKFYELYHMDAVIGVNELGLTFM---KGTWAHSGFPEIGFGRFSDGLVQKGYKVARVEQ 493
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIG-PDAVHLLAIKEG 399
ET E +AR + V+ R++ ++T T +DG + LL++KE
Sbjct: 494 TETPEMMEARCKAMAKPTKFDRVVRREVCRIITRGTQTYSVLDGAPSESQSKFLLSLKEK 553
Query: 400 NCGPDNG-SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+G S YG FVD + VG DD C+ L L+ SP EV++E E
Sbjct: 554 AEEESSGRSRTYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIAHHSPAEVLFEKGNPSVE 613
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-----------NGSSSPW 507
+K L+ ++ S+AL+ A T F DA + K + YF N S P
Sbjct: 614 TRKILK--ASLSSALQ-EGLSAGTQFWDAQKTLKTLSEEDYFREGADKGQAGGNNSPPPL 670
Query: 508 SKALENVMQ---------HDIGFSALGGLISHLSRLMLDDVLRN----GDILPYKV---- 550
K + + +D+ SALGG I +L + ++D L + + +P V
Sbjct: 671 LKQMTSESDALGLTPKDGYDLALSALGGCIFYLKKCLVDQELLSMANFEEYVPVDVEMEK 730
Query: 551 ----------YRDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWIC 581
R + +DG TL LD+C T GKRLL+ W+C
Sbjct: 731 AAGPASFFAQTRQRMVVDGVTLANLEIFQNGSGGSEGTLLERLDTCCTLFGKRLLKQWLC 790
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPL 641
PL + I +RLD VE LM V+ L+KLPDLERLL ++ I PL
Sbjct: 791 APLCNPLSIKDRLDAVEDLMGLQAQAGEVSDLLKKLPDLERLLSKIHG-------IGTPL 843
Query: 642 IGKKVLKQQVKVFGSLVKGLRIAMDLL 668
G+ + ++ + R D L
Sbjct: 844 KGQDHPDSRAVLYEEVTYSKRKIADFL 870
>gi|358381647|gb|EHK19322.1| hypothetical protein TRIVIDRAFT_81241 [Trichoderma virens Gv29-8]
Length = 1208
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 258/517 (49%), Gaps = 55/517 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD +R P DP YD RTLYIPP A K S +KQYW +K D ++FFK
Sbjct: 290 RYTWL--ANIRDKEKRSPTDPDYDPRTLYIPPIAWNKFSPFEKQYWEIKQDLWDTIVFFK 347
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D+K+T R VG+ E +D V + +A+ YKV R+EQ
Sbjct: 348 KGKFYELYEKDATIGHQEFDFKMT--DRVNMRMVGVPEGSLDHWVNQFIAKQYKVARVEQ 405
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+ET+ Q K + + VISRKL ++T T VDG++ D A + ++IKE
Sbjct: 406 METNLGKEMRERQDKTKKADKVISRKLGCILTAGTLVDGSMLQDDMAAYCVSIKESVV-- 463
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AF D A R ++ DD L+ Q+ P+E++ E GL ++ + L
Sbjct: 464 -DDLPAFGIAFTDTATGRFFLSGFVDDIDRTKFETLVAQIGPRELLLEKSGLSTKSLRIL 522
Query: 464 RKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDI 519
+ ++ + L P T+F DA ++ + YF W +AL+ + D+
Sbjct: 523 KNNTSPTTIWTNLKPG---TEFWDADTTRRELDCAKYFVREEDGEDIWPEALKELKDDDL 579
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQTL-------------- 562
SA+GGL+S+L L L+ +L G+ Y + L +DGQTL
Sbjct: 580 VMSAIGGLVSYLRFLKLEGPLLSQGNFEVYNPIQKNSTLVLDGQTLTNLELFANTVNGNS 639
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+ HPL +++ IN RLD VE L + V A L K
Sbjct: 640 DGTLFGLLNKCITPFGKRLFRQWVAHPLCNIDRINERLDAVELLNDDPSVREQFASQLVK 699
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
+PDLERL+ R+ A V L G + ++ + + G+ G + L+ M
Sbjct: 700 MPDLERLISRIHAGACKPEDFVRVLEGFEQIEYTMTLVGAFKGGNGLIDRLITSM----- 754
Query: 677 IIPSLSR--IFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
P+L + FD ++ L E+ +D DF
Sbjct: 755 --PNLEEPLAYWSTAFDRQKAKEEKLMIPESGVDEDF 789
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 154/280 (55%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I I+ +D L S A ASMS G P PQ D VL+ + L HP
Sbjct: 896 WLKAIKIIAQLDCLVSLA-KASMSLG---EPSCRPQF------VDEERSVLEFEELRHPC 945
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+ +PNDI LG D + LLTG N GKST+LR +C+AVI+AQ+GCFVP
Sbjct: 946 MINTVDDF-IPNDIKLGGDQ----AKINLLTGANAAGKSTVLRMSCIAVIMAQVGCFVPA 1000
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1001 KSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1060
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF +HP + + M + +
Sbjct: 1061 DGVAVAQAVLHHVATHIGCIGFFATHYHSLATEFENHPEIRARRMQI-------HVDDEE 1113
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+ +V++ A AA
Sbjct: 1114 RRITFLYKLEDGVAEGSFGMHCAAMCGISDRVIKRAEIAA 1153
>gi|46126343|ref|XP_387725.1| hypothetical protein FG07549.1 [Gibberella zeae PH-1]
Length = 1210
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 162/468 (34%), Positives = 241/468 (51%), Gaps = 46/468 (9%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
D ++ WL + I D RR+PDDP YDKRT+Y+PP A K S + QYW +K D +
Sbjct: 288 DPDQRYPWL--ANIMDKERRKPDDPEYDKRTIYVPPGAWNKFSPFETQYWKIKQNLWDTI 345
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKFYELYE DA +GH+E D+K+T R VG+ ES +D V + +A+ YKV
Sbjct: 346 VFFKKGKFYELYENDATVGHQEFDFKMT--DRVNMRMVGVPESSLDYWVNQFIAKQYKVA 403
Query: 349 RIEQLETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
R++Q+ET+ Q K++ + +I+R+L ++T T VDG + D A + +AIKE
Sbjct: 404 RVDQMETNLGKEMRERQDKSKKADKIITRELACILTAGTLVDGGMLQDDMASYCVAIKES 463
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+ +G AF D A R ++ + DD L+ Q P+E++ E L +A
Sbjct: 464 VV---DDLPAFGIAFADTATGRFYLSSFVDDVDLTKFETLIAQTGPRELLIEKSHLSTKA 520
Query: 460 QKALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVM 515
+ L+ ++ + L P T+F DA ++ + YF + W +AL+ +
Sbjct: 521 LRILKNNTSPTTIWTHLKPG---TEFWDADTTRRELNTANYFKTDDADEEVWPEALQGLR 577
Query: 516 QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL---------- 562
D+ SA G LIS+L L ++ +L G+ Y + L +DGQTL
Sbjct: 578 DDDVIMSATGALISYLRFLKVEGPLLSQGNFELYNPIQKNGTLILDGQTLINLEVFSNSV 637
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
L+ CVT GKRL RSW+ HPL +++ IN RLD VE L + V A
Sbjct: 638 NGGSEGTLFSLLNKCVTPFGKRLFRSWVAHPLCNIDRINERLDAVEMLNADQTVREQFAS 697
Query: 613 YLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG 660
L K+PDLERL+ R+ A V L G + ++ + + GS G
Sbjct: 698 QLVKMPDLERLISRIHAGACKPEDFVKVLEGFEQIEYTMGLLGSYKGG 745
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 156/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S + F W I IS +D L S A +S ++ +P PQ
Sbjct: 882 EVASRFFQKFDVDYDTWLSAIKIISQLDCLVSLA----KASASLGQPSCRPQF------V 931
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D + + L HP + N +PNDI LG + + LLTG N GKST+LR
Sbjct: 932 DEERSTVDFQELRHP-CMMHNVDDFIPNDIKLGGEQ----AKINLLTGANAAGKSTVLRM 986
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 987 SCVAVIMAQIGCYVPATFARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1046
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1047 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGCVGYFATHYHSLATEFENHPEIRARR 1106
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + ++ + F+Y+L G S+G+ A M G+ +V++ A AA
Sbjct: 1107 MQI-------HVDEDERRVTFMYKLEDGVAEGSFGMHCAAMCGISSRVIDRAEVAA 1155
>gi|408389823|gb|EKJ69247.1| hypothetical protein FPSE_10585 [Fusarium pseudograminearum CS3096]
Length = 1210
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 162/468 (34%), Positives = 241/468 (51%), Gaps = 46/468 (9%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
D ++ WL + I D RR+PDDP YDKRT+Y+PP A K S + QYW +K D +
Sbjct: 288 DPDQRYPWL--ANIMDKERRKPDDPDYDKRTIYVPPAAWNKFSPFETQYWKIKQNLWDTI 345
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKFYELYE DA +GH+E D+K+T R VG+ ES +D V + +A+ YKV
Sbjct: 346 VFFKKGKFYELYENDATVGHQEFDFKMT--DRVNMRMVGVPESSLDYWVNQFIAKQYKVA 403
Query: 349 RIEQLETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
R++Q+ET+ Q K++ + +I+R+L ++T T VDG + D A + +AIKE
Sbjct: 404 RVDQMETNLGKEMRERQDKSKKADKIITRELACILTAGTLVDGGMLQDDMASYCVAIKES 463
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+ +G AF D A R ++ + DD L+ Q P+E++ E L +A
Sbjct: 464 VV---DDLPAFGIAFADTATGRFYLSSFVDDVDLTKFETLIAQTGPRELLIEKSHLSTKA 520
Query: 460 QKALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVM 515
+ L+ ++ + L P T+F DA ++ + YF + W +AL+ +
Sbjct: 521 LRILKNNTSPTTIWTHLKPG---TEFWDADTTRRELNTANYFKTDDADEEVWPEALQGLR 577
Query: 516 QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL---------- 562
D+ SA G LIS+L L ++ +L G+ Y + L +DGQTL
Sbjct: 578 DDDVIMSATGALISYLRFLKVEGPLLSQGNFELYNPIQKNGTLILDGQTLINLEVFSNSV 637
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
L+ CVT GKRL RSW+ HPL +++ IN RLD VE L + V A
Sbjct: 638 NGGSEGTLFSLLNKCVTPFGKRLFRSWVAHPLCNIDRINERLDAVEMLNADQTVREQFAS 697
Query: 613 YLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG 660
L K+PDLERL+ R+ A V L G + ++ + + GS G
Sbjct: 698 QLVKMPDLERLISRIHAGACKPEDFVKVLEGFEQIEYTMGLLGSYKGG 745
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 156/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S + F W I IS +D L S A +S ++ +P PQ
Sbjct: 882 EVASRFFQKFDVDYDTWLSAIKIISQLDCLVSLA----KASASLGQPSCRPQF------V 931
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D + + L HP + N +PNDI LG D + LLTG N GKST+LR
Sbjct: 932 DEERSTVDFQELRHP-CMMHNVDDFIPNDIKLGGDQ----AKINLLTGANAAGKSTVLRM 986
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 987 SCVAVIMAQIGCYVPATFARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1046
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1047 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGCVGYFATHYHSLATEFENHPEIRARR 1106
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + ++ + F+Y+L G S+G+ A M G+ +V++ A AA
Sbjct: 1107 MQI-------HVDEDERRVTFMYKLEDGVAEGSFGMHCAAMCGISSRVIDRAEVAA 1155
>gi|400602832|gb|EJP70430.1| MutS domain V [Beauveria bassiana ARSEF 2860]
Length = 1206
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 168/475 (35%), Positives = 246/475 (51%), Gaps = 55/475 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL SKIRD RR P DP YD RT+YIPP A K S +KQYW +K D ++FFK
Sbjct: 287 RYSWL--SKIRDKERREPGDPDYDPRTIYIPPLAWSKFSPFEKQYWEIKQNLWDTIVFFK 344
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D+K+T R VG+ ES +D V + +A+ YKV R++Q
Sbjct: 345 KGKFYELYENDATIGHQEFDFKMT--DRVNMRMVGVPESVLDHWVNQFIAKQYKVARVDQ 402
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET+ + + + VISR+L V+T T VDG++ D A H +AIKE
Sbjct: 403 METNLGKEMRERQDKTGKKADKVISRQLACVLTAGTLVDGSMLQDDMAAHCVAIKESVV- 461
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+G +G AFVD A ++ DD + Q+ P+E++ E L +A +
Sbjct: 462 --DGLPAFGIAFVDTATGHFFLTDFIDDVDLTKFETFIAQIGPREMLLEKSHLSTKANRI 519
Query: 463 LRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFN---GSSSPWSKALENVMQHD 518
L+ ++ + L P + +F DA ++ + YF+ GS W +ALE +D
Sbjct: 520 LKNNTSPTTIWTYLKPDV---EFWDADTCRRELNAANYFSTEKGSEGSWPEALEKEKDND 576
Query: 519 IGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL------------- 562
SA+G LI +L L L+ +L + Y + L +DGQTL
Sbjct: 577 RVMSAVGALIWYLRFLKLERPLLSQSNFSLYNPIQKNGTLILDGQTLINLEIFSNSVNGG 636
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L+ C+T GKRL R W+ HPL++++ IN RLD V+ L K+ V + L
Sbjct: 637 SEGTLFQLLNKCITPFGKRLFRQWVAHPLQNIDRINERLDAVDMLNKDPSVREQFSSQLV 696
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIAMDLL 668
K+PDLERL+ R+ A C P +VL+ +Q++ +LV + + LL
Sbjct: 697 KMPDLERLISRIHA------CSCKPEDFVRVLEGFEQIEYTMTLVSAFKGSNGLL 745
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 154/280 (55%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W I I+ +D L S A AS+ G P PQ V QD +++ + L HP
Sbjct: 894 WLSAIQVIAQLDCLVSLA-KASLCLG---EPSCRPQ----FVDQDRS--LVEFEELRHPC 943
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L NG +PNDI LG + + LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 944 MLSTNGDF-IPNDIKLGGEQANIN----LLTGANAAGKSTVLRMSCIAVIMAQIGCYVPA 998
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 999 ISAKLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1058
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH + EF +HP + + M + +
Sbjct: 1059 DGVAVAQAVLHHVATHIGCVGFFATHYHSIATEFENHPEIRARRMQI-------HVDDQE 1111
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+ V+E A AA
Sbjct: 1112 RRITFLYKLEDGVAEGSFGMHCAAMCGISNSVIERAEVAA 1151
>gi|395508080|ref|XP_003758343.1| PREDICTED: DNA mismatch repair protein Msh6 [Sarcophilus harrisii]
Length = 1424
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 135/298 (45%), Positives = 187/298 (62%), Gaps = 15/298 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ DVL A + G M RP+IL V + P LK+
Sbjct: 1101 FDKNYRDWQTAVECIAVFDVLLCLANYSRGGEGPMCRPVIL-------VPDEETRPFLKL 1153
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCL--PRTLLLTGPNMGGKSTLLRATCL 847
KG HP G +PNDI++G EDS+D +L+TGPNMGGKSTL+R L
Sbjct: 1154 KGSRHPCVTNNFFGDDFIPNDIMIGCKEEDSEDSTWDAYCVLVTGPNMGGKSTLMRQAGL 1213
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+I+AQ+GC+VP E+C + D +FTRLGA+DRIM+GESTF VE ETAS+LQ AT+ SL
Sbjct: 1214 LLIMAQMGCYVPAEVCSFTPVDRVFTRLGASDRIMSGESTFFVEMNETASILQHATEHSL 1273
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1274 VLMDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVCLGHMAC 1333
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ T GACP+SYG A +A +P+++++ A +K
Sbjct: 1334 MVENECEDPSQ--ETITFLYKFTKGACPKSYGFNAARLACLPEEIIQKGHRKAKEFEK 1389
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 220/464 (47%), Gaps = 74/464 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K +DA RRRPD P YD T+++P + L + +++W +KSQ D+++F+KV
Sbjct: 431 LEWLKEGKRKDACRRRPDHPDYDPNTVHVPEDFLNTCTPGMRRWWQIKSQNFDLVIFYKV 490
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 491 GKFYELYHMDAIIGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 547
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIG-PDAVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T +DG + +LL +KE
Sbjct: 548 ETPEMMEARCRKLTHISRFDRVVRREICRIITKGTQTYSVLDGEPSESNNKYLLCVKEKE 607
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+YG F+D + + ++G +DD C+ L+ +P ++++E L E +
Sbjct: 608 EEASGHMRLYGVCFIDTSVGKFYMGQFSDDRHCSRFRTLVAHYTPAQILFEKGNLSAETR 667
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
K L+ + S LTP + F DA++ + + GYF +
Sbjct: 668 KVLKVSLSSSIQESLTPG---SQFWDAAKTLRTLLEEGYFKEKLNVADGVVLPPVLKSMT 724
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR-----------NGDIL----PY 548
S S L + ++ SALGG + +L + ++D L + D++ P
Sbjct: 725 SESDSIGLTPNEKSELALSALGGCVFYLKKCLIDYELLSMANFEEYIPVDADMVKAVKPG 784
Query: 549 KVY--RDC-LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
++ RDC + +D TL +DSC T GKRLL+ W+C PL
Sbjct: 785 AIFGKRDCRMVLDAVTLSNLEILQNAVNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLC 844
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ IN+RLD +E LM + + V L+KLPDLERLL ++ +
Sbjct: 845 NPSSINDRLDAMEDLMAVPDKISEVVDLLKKLPDLERLLNKIHS 888
>gi|148236863|ref|NP_001089247.1| mutS homolog 6 [Xenopus laevis]
gi|58399508|gb|AAH89270.1| MGC85188 protein [Xenopus laevis]
Length = 1340
Score = 258 bits (660), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 184/293 (62%), Gaps = 16/293 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + +W + + +DVL S + + G + RP I V Q+NG P L++
Sbjct: 1020 FDKNYKEWQTAVECFAVLDVLISLSQYSQGGDGPVCRPEI--------VLQENGSPFLEL 1071
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRT--LLLTGPNMGGKSTLLRATCL 847
KG HP G +PNDIL+G EDSDD +L+TGPNMGGKSTLLR L
Sbjct: 1072 KGSRHPCITKTFFGDDFIPNDILVGCKEEDSDDGSDEAHCVLVTGPNMGGKSTLLRQAGL 1131
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
V++AQLGC+VP + C L+ D +FTRLGA+DRIM GESTF VE +ET+S+LQ AT+ SL
Sbjct: 1132 QVVMAQLGCYVPADSCRLTPVDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSL 1191
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++ + V L HMAC
Sbjct: 1192 VLLDELGRGTATFDGTAIAGAVVKELSESIKCRTLFSTHYHSLVEDHSHSQSVRLGHMAC 1251
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ E+ S+ + + FLY+ GACP+SYG A +A +P ++++ A
Sbjct: 1252 MVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLAHIPDEIIQVGHQKA 1302
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 154/518 (29%), Positives = 230/518 (44%), Gaps = 89/518 (17%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF+WL K +D R+R D YD TLYIP + L K + +++W +KSQ D ++F+K
Sbjct: 348 KFDWLQDGKRKDMKRKRQTDADYDPSTLYIPDDFLNKCTPGVRKWWQLKSQNFDTVIFYK 407
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 408 VGKFYELYHMDAVIGVNELGLTFM---KGTWAHSGFPEIAFGRFSDVLVQKGYKVSRVEQ 464
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIGPDAVH---LLAIK 397
ET E +AR + V+ R++ ++T T +DG P H LL K
Sbjct: 465 TETPEMMEARCKSMSHPSKFDRVVRREICRIITKGTQTYSVLDGN--PSESHSKYLLCFK 522
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
E VYG +FVD + + VG DD C+ L+ P ++++E
Sbjct: 523 EKMDDSSGQRRVYGVSFVDTSVGKFHVGQFEDDRHCSRFRTLVAHFPPVQILFEKGNPSS 582
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPW---------- 507
+ +K L+ + S L P + F DAS K + YF P
Sbjct: 583 DTKKVLKSCLSTSIQESLQP---TSQFWDASRTLKTLAEEAYFEKDFQPATGNGNLPSVL 639
Query: 508 --------SKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPY---------- 548
S AL + ++ SALG I +L + ++D ++L + Y
Sbjct: 640 KSMTSESDSLALTPGEKCELALSALGACIYYLKKCLIDQELLSMANFEEYVPVDTDVEKA 699
Query: 549 --------KVYRDCLRMDGQTLY--------------------LDSCVTSSGKRLLRSWI 580
K R + +DG TL LD+C T GKRLL+ W+
Sbjct: 700 QTSSNFFAKTSRRMV-LDGVTLTNLEILQNGTNGSTEGTLLEKLDTCSTPFGKRLLKQWL 758
Query: 581 CHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV-------KARVQA 633
C PL + IN+RL+ VE LM V V++ L+KLPDLERLL ++ K++
Sbjct: 759 CAPLCNPFSINDRLNAVEDLMALPGKVSEVSELLKKLPDLERLLSKIHSIGSPLKSQNHP 818
Query: 634 SSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
S V+ K+++ F S ++G ++ +++ +M
Sbjct: 819 DSRAVM-YEEITYSKKKIADFLSTLEGFKVMREVISIM 855
>gi|290999909|ref|XP_002682522.1| DNA mismatch repair protein msh6 [Naegleria gruberi]
gi|284096149|gb|EFC49778.1| DNA mismatch repair protein msh6 [Naegleria gruberi]
Length = 1998
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/285 (46%), Positives = 182/285 (63%), Gaps = 20/285 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W ++ +IS +D L S T+S RP+ILP KN PVLK+ + HP
Sbjct: 1664 WKTIMRSISELDCLLSLYTTSSQEGYC--RPVILP-FKNK--------PVLKVTKMRHPT 1712
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+G +PNDI +G D TLL+TGPNMGGKST+LR++C+AVI+AQ+GCFVP
Sbjct: 1713 VRTTSGF--IPNDIFMGADD----ATTLLVTGPNMGGKSTILRSSCIAVIMAQIGCFVPA 1766
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
E C L+L D IFTR+GA DRI+ GESTF+VE ET+++++ AT SLVILDELGRGTST
Sbjct: 1767 EACELTLIDRIFTRIGANDRILAGESTFMVELLETSNIVRNATSRSLVILDELGRGTSTH 1826
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DGYAIA +V + + + + C +F+THY+ LT+E HP + M C + + +
Sbjct: 1827 DGYAIANSVAQYMADVVGCLCMFSTHYYELTEELKHHPSIDFYQMECEVEKDE---TGRI 1883
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+++FLY+ G C +SYG+QVA AGVPQ +V+ AS A +K
Sbjct: 1884 TDVIFLYQFARGVCEKSYGIQVAKKAGVPQSIVDRASVVAEEFEK 1928
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 144/505 (28%), Positives = 229/505 (45%), Gaps = 64/505 (12%)
Query: 246 NRRRPD-DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDA 304
++RRP+ DP +DK TLYI + ++ ++QYW K +MD L+FFK GKFYELYE DA
Sbjct: 1048 DKRRPESDPDFDKSTLYISTGDMSNLTPMEQQYWATKKNHMDKLVFFKKGKFYELYEEDA 1107
Query: 305 EIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH- 363
+I KE D KIT R G+ ES + +K ++ GY R+EQ ET E+ R
Sbjct: 1108 DIAKKEFDLKITER--INMRMAGVPESSFLNYAKKFISLGYDCLRVEQTETVEERNERKK 1165
Query: 364 ----TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDC 417
+S + R++ ++ T +T D D +LL +KE D YG F+D
Sbjct: 1166 EKKTASSCVGREICDITTIATITDLDFISDNGNQYLLCVKE-----DIMHARYGITFLDI 1220
Query: 418 AALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTP 477
+ ++G I DD L+ ++P E+I E + +K + +
Sbjct: 1221 SMDAFYIGFIEDDTHRNQFNTLIHTINPSEIIIEKGQTSVQTKKNIDNKRVVIREKKTCN 1280
Query: 478 AMAVTDF--LDASEVKKLVQLNGYFNGSSSPWSK--ALENVMQHDIGFSALGGLISHLSR 533
+A +F ++V K YF S+ ++ + +D+ S+ G + +L
Sbjct: 1281 ELAQKEFTGFPTADVTK------YFLEDLPHISEDAIVKQFLDNDLVMSSFGAALFYLKY 1334
Query: 534 LMLDDVLRNGDILPYKVY-----RDCLRMDGQTL--------------------YLDSCV 568
L +DVL + I + +Y L +DGQTL +D+ V
Sbjct: 1335 LRKEDVLLSKTI-KFSLYDGKMDTGHLILDGQTLTNLDVKVNSNTGTKEGTLLSLVDNTV 1393
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG--- 625
T+ G+R+L +W+ PLK+ E IN+R D +E +M E + L + DLER L
Sbjct: 1394 TAMGRRMLENWLTRPLKNSEEINDRYDAIEDIMSIIEEPQSIRDQLSNIKDLERCLHCLY 1453
Query: 626 RVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPS--LSR 683
R +VQ K++VK + ++ LR + ++ + K + S L R
Sbjct: 1454 RESRKVQKEIA-----FDTSTSKRRVKPYLHALESLRAGVIIVQGLQKYAESVNSSILKR 1508
Query: 684 IFKPPIFDGSDGLDKFLTQFEAAID 708
+ D D +D L+ FE ID
Sbjct: 1509 VIN---IDNLDEIDNVLSTFENQID 1530
>gi|358390700|gb|EHK40105.1| hypothetical protein TRIATDRAFT_252385 [Trichoderma atroviride IMI
206040]
Length = 1184
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/434 (36%), Positives = 227/434 (52%), Gaps = 47/434 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD ++R PDDP YD RTL+IPP A K S +KQYW +K D ++FFK
Sbjct: 265 RYPWL--ATIRDKDKRLPDDPDYDPRTLFIPPGAWNKFSPFEKQYWEIKQNLWDTIVFFK 322
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D+K+T R VG+ E +D V + +A+ YKV R+EQ
Sbjct: 323 KGKFYELYEKDATIGHQEFDFKMT--DRVNMRMVGVPEGSLDHWVNQFIAKQYKVARVEQ 380
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET+ E + + VISRKL V+T T VDG++ D A + ++IKE
Sbjct: 381 METNLGKEMREREDKSGKKADKVISRKLGCVLTAGTLVDGSMLQDDMAAYCVSIKESIV- 439
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+ +G AF D A R ++ DD L+ Q+ P+E++ E GL + +
Sbjct: 440 --DDLPAFGIAFTDTATGRFFLSGFVDDVDRTRFETLIAQIGPRELLLEKSGLATKTLRI 497
Query: 463 LRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHD 518
L+ ++ + L P T+F DA +K + YF W +AL+ + D
Sbjct: 498 LKNNTSPTTIWTNLKPG---TEFWDADTSRKELSCAKYFVKGEDEEEVWPEALQELRDDD 554
Query: 519 IGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQTL------------- 562
+ SA+GGL S+L L L+ +L G YK + L +DGQTL
Sbjct: 555 LVMSAVGGLTSYLRFLKLEGPLLSQGSFEIYKPIQKNSTLVLDGQTLTNLELFSNTVNGN 614
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L+ C+T GKRL R W+ HPL +++ IN RLD VE L + V A L
Sbjct: 615 TDGTLFGLLNKCITPFGKRLFRQWVAHPLCNIDRINERLDAVELLNDDPSVREQFASQLV 674
Query: 616 KLPDLERLLGRVKA 629
K+PDLERL+ R+ A
Sbjct: 675 KMPDLERLISRIHA 688
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 152/280 (54%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I ++ +D L S A +S RP + + ++ V+ + L HP
Sbjct: 872 WLKSIQIVAQLDCLVSLAKASSSLGEPSCRPQFVEEERS----------VMDFEELRHPC 921
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+ +PN+I LG D + LLTG N GKST+LR +C+AVI+AQ+GCFVP
Sbjct: 922 MINTVDDF-IPNNIKLGGDQ----AKINLLTGANAAGKSTVLRMSCIAVIMAQVGCFVPA 976
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 977 KSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1036
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF +HP + + M + +
Sbjct: 1037 DGVAVAQAVLHHVATHIGCIGFFATHYHSLATEFENHPEIRARRMQI-------HVDDEE 1089
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+ +V++ A AA
Sbjct: 1090 RRITFLYKLEDGVAEGSFGMHCAAMCGISDRVIKRAEVAA 1129
>gi|348507016|ref|XP_003441053.1| PREDICTED: DNA mismatch repair protein Msh6 [Oreochromis niloticus]
Length = 1381
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/301 (43%), Positives = 189/301 (62%), Gaps = 16/301 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + S W + ++ +DVL + + + S G M RP ++LP+ P +
Sbjct: 1055 FDKNYSDWKTAVECMAVLDVLLALSRYSQGSDGPMARPEVVLPEDDAQV------APFID 1108
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG------EDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
+KG HP G +PNDI +G DD L +L+TGPNMGGKSTL+R
Sbjct: 1109 LKGSRHPCVTKTFFGDDFIPNDIFIGCPGTGENGEDDSLASCVLVTGPNMGGKSTLMRQC 1168
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L +ILAQLGC++P E + D +FTRLGA+DRIM GESTF VE +ET+S+L AT+
Sbjct: 1169 GLVIILAQLGCYIPAESLRFTPVDRVFTRLGASDRIMAGESTFFVELSETSSILHHATKH 1228
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SLV+LDELGRGT+T+DG AIA AV ++L E+I CR LF+THYH L +++A++P V L HM
Sbjct: 1229 SLVLLDELGRGTATYDGTAIASAVVKELAEKICCRTLFSTHYHSLVEDYANNPAVRLGHM 1288
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
AC ++ E+ S+ + + FLY+ +GACP+SYG A +A +P++V+++ A +K
Sbjct: 1289 ACMVENECEDPSQ--ETITFLYKFITGACPKSYGFNAARLANLPEEVIQSGHRKAREFEK 1346
Query: 1026 S 1026
S
Sbjct: 1347 S 1347
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 157/517 (30%), Positives = 237/517 (45%), Gaps = 85/517 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +D RRR D YD TLY+P + + +++ +++W +KS+ D ++F+K
Sbjct: 382 KLEWLQDGKRKDGKRRRQTDDDYDPSTLYVPNDFMNEITPGMRRWWQLKSEMFDTVIFYK 441
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG E+ G G E G + LV +GYKV R+EQ
Sbjct: 442 VGKFYELYHMDAVIGVNEMGLTFM---KGTWAHSGFPEIGFGRFSDVLVQKGYKVARVEQ 498
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIG-PDAVHLLAIKEG 399
ET E +AR + V+ R++ ++T T +DG + LL++KE
Sbjct: 499 TETPEMMEARCKTMLKPTKFDRVVRREVCRIITRGTQTYSVLDGAPSESQSKFLLSLKEK 558
Query: 400 NCGPDNGSV-VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+G YG FVD + VG +DD C+ L L+ +P EV++E E
Sbjct: 559 AEEEGSGRCRTYGVCFVDTSVGCFHVGQFSDDRHCSRLRTLIAHYAPAEVLFEKGNPSVE 618
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-------NGSSSPWSKAL 511
+K L+ ++ S+AL+ A T F DA + K + YF G+ S + AL
Sbjct: 619 TRKILK--ASLSSALQ-EGLNAGTQFWDAQKTLKTLSEEDYFKEATGKEQGTGSSFLPAL 675
Query: 512 ENVMQ-------------HDIGFSALGGLISHLSRLMLDDVLRN----GDILPYKV---- 550
M +++ SALGG I +L + ++D L + + +P V
Sbjct: 676 LKEMTSESDSLCLTPKEGYELALSALGGCIFYLKKCLVDQELLSMANFEEYVPVDVEMEK 735
Query: 551 ----------YRDCLRMDGQTLY-------------------LDSCVTSSGKRLLRSWIC 581
R + +DG TL LD+C T GKRLL+ W+C
Sbjct: 736 AAGPASFFAKTRQRMVLDGVTLVNLEIFQNGSGGTEGTLLERLDTCSTPFGKRLLKQWLC 795
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV-------KARVQAS 634
PL + I +RLD VE LM V+ L+KLPDLERLL ++ K++
Sbjct: 796 APLCNPTSIRDRLDAVEDLMGAQAQATEVSDLLKKLPDLERLLSKIHSIGTPLKSQDHPD 855
Query: 635 SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
S VL K+++ F S ++G + D++ L
Sbjct: 856 SRAVL-YEEVTYSKRKIADFLSALEGFKTMQDIISLF 891
>gi|449496462|ref|XP_002196049.2| PREDICTED: DNA mismatch repair protein Msh6 [Taeniopygia guttata]
Length = 1359
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 188/296 (63%), Gaps = 12/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + + W + I+ +DVL S A + G + RP IL + +DN P L++
Sbjct: 1039 FAKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPEIL-------LPRDNARPFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+ HP G +PNDI++G ++ +L+TGPNMGGKSTL+R L V+
Sbjct: 1092 RNSRHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLVV 1151
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQLGC+VP E C L+ D +FTRLGA+DRIM GESTF VE +ET+S+LQ AT+ SLV++
Sbjct: 1152 MAQLGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLV 1211
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+TFDG AIA AV ++L ERI CR LF+THYH L ++++ V L HMAC +
Sbjct: 1212 DELGRGTATFDGTAIASAVVQELAERIQCRTLFSTHYHSLVEDYSHCGAVRLGHMACMVE 1271
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ SE+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K+
Sbjct: 1272 NESEDPSQ--ETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKT 1325
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 160/522 (30%), Positives = 241/522 (46%), Gaps = 96/522 (18%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K +WL K RD +RRR DP YD TLY+P + L K + +++W +KSQ D ++ +K
Sbjct: 370 KLDWLQEGKRRDVHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNFDAVICYK 429
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA G EL I + G G E+ + LV +GYKV R+EQ
Sbjct: 430 VGKFYELYHMDAVTGVNELGL-IFMKGTWA--HSGFPETAFGRFSDVLVQKGYKVARVEQ 486
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEG 399
ET E +AR + V+ R++ ++T T + D + LL++KE
Sbjct: 487 TETPEMMEARCKSKGQSTKFDKVVRREICRIITKGTQTYSVMDCDPSENHSKFLLSVKEK 546
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
G+ VYG FVD + + VG DD C+ L+ +P +V++E L +
Sbjct: 547 E--DSAGTRVYGVCFVDTSMGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDT 604
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-------NGSSSPW----- 507
QK L+ LT + F +AS+ K++ GYF NG S P
Sbjct: 605 QKILKGSLVSCIQEGLTSG---SQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSL 661
Query: 508 -----SKALENVMQHDIGFSALGGLISHLSRLMLD---------------DVLRNGDILP 547
S L ++ SALGG + +L R ++D D+ D+
Sbjct: 662 TSESDSLGLTPGENSELALSALGGCVFYLKRCLIDQELLSQANFEEYVPVDIATAKDMSS 721
Query: 548 YKVY-RDCLRM--DGQTLY--------------------LDSCVTSSGKRLLRSWICHPL 584
++ R RM DG TL +DSC T GKRLL+ W+C PL
Sbjct: 722 SSLFARTGQRMVLDGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPL 781
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGK 644
+ + IN+RLD VE L+ + + V++YL+KLPDLERLL ++ + I PL +
Sbjct: 782 CNPKSINDRLDAVEDLLAVPDKMSEVSEYLKKLPDLERLLSKIHS-------IGSPLKSQ 834
Query: 645 -------------KVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
K K+++ F S ++G +I +++ M +
Sbjct: 835 NHPDSRAIFYEELKYSKKKIADFLSTLEGFKIMNEIVEFMEE 876
>gi|348574694|ref|XP_003473125.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6-like
[Cavia porcellus]
Length = 1354
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 201/328 (61%), Gaps = 18/328 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP L+LP NP P L+
Sbjct: 1036 FDKNYKDWQCAVECIAVLDVLLCLANYSQGGDGPMCRPALLLPGEHNP--------PFLE 1087
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++G HP G +PNDIL+G E +D +L+TGPNMGGKSTL+R L
Sbjct: 1088 LRGSRHPCITKTFFGDDFIPNDILIGCEEQQEDGRAYCVLVTGPNMGGKSTLIRQAGLLA 1147
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP EMC L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1148 VMAQMGCYVPAEMCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVL 1207
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1208 VDELGRGTATFDGTAIASAVVKELAETIRCRTLFSTHYHSLVEDYSKNVAVRLGHMACMV 1267
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K + +
Sbjct: 1268 ENECEDPSQ--ETITFLYKFVQGACPKSYGFNAARLAHLPEEVIQKGHRKAREFEK-MNQ 1324
Query: 1030 S---FKSSEQRSEFSSLHEEWLKTIVNV 1054
S F+ SE SS+ E L ++ +
Sbjct: 1325 SLRLFREVCLASERSSIDAEALHKLLTL 1352
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 212/462 (45%), Gaps = 76/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 368 LEWLKKEKRRDEHRRRPDHPDFDPSTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 427
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA +G EL G G E + LV +GYKV R+EQ
Sbjct: 428 GKFYELYHMDALVGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 484
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 485 ETPEMMEARCRKMAHISKYDKVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 544
Query: 401 CGPDNGSV-VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+G V +YG FVD + + ++G +DD C+ L+ P +V++E L E
Sbjct: 545 --DSSGHVRLYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSVET 602
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG----------------- 502
+ L+ + S L P + F DA++ + + GYF
Sbjct: 603 KTILKGTLSSSLQEGLIPG---SQFWDAAKTLRTLLEEGYFTEKLNEDTGVMLPSVLKGM 659
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL-------------------RNG 543
+S S L ++ SALGG + +L + ++D L R G
Sbjct: 660 TSESDSIGLTPGENSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSVRPG 719
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 720 AIFTKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERIDTCYTPFGKRLLKQWLCAPLC 779
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD VE LM + + V L+KLPDLERLL ++
Sbjct: 780 SPFAINDRLDAVEDLMDVPDKISEVTDLLKKLPDLERLLSKI 821
>gi|320163391|gb|EFW40290.1| mismatch repair protein Msh6 [Capsaspora owczarzaki ATCC 30864]
Length = 1363
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/308 (46%), Positives = 189/308 (61%), Gaps = 29/308 (9%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E L+ + F ++WS + ++ +D L S A +S + RP ++ +
Sbjct: 1044 EGLARALARFDTHVAKWSAAVRCVAELDCLLSLASASSSLGDPVCRPTLVERG------D 1097
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ PVL+++ L HP L G + ND LG + PR LLLTGPNMGGKSTLLR
Sbjct: 1098 DDSEPVLELEDLRHPL-LAYLGSSYIANDTALGGKAH---PRILLLTGPNMGGKSTLLRQ 1153
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TCL+VI+AQLGCFVP CVLS D IFTR+GA D I+ G+STF+VE ET+++L+ AT+
Sbjct: 1154 TCLSVIMAQLGCFVPAAKCVLSPVDRIFTRIGANDNILAGQSTFMVELRETSNILKNATR 1213
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF---------- 954
DSLVILDELGRGTSTFDGY+IAY+V L I CR LF+THYH LT E
Sbjct: 1214 DSLVILDELGRGTSTFDGYSIAYSVLHHLSHEIRCRALFSTHYHMLTDEVIDEQQREMQQ 1273
Query: 955 --ASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
+S P V L HMAC +G +E+ FLY+LT G C +S+G+ VA MAG+P +V
Sbjct: 1274 TGSSVPIVGLAHMACLV-------DEGKREVTFLYKLTDGVCNKSHGMNVANMAGLPSEV 1326
Query: 1013 VEAASHAA 1020
++ A A
Sbjct: 1327 IDRAEQKA 1334
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 182/399 (45%), Gaps = 57/399 (14%)
Query: 214 LQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSAS 273
L S AG EE ++ WL ++D + R P DP YD RTL+IPP A K +
Sbjct: 353 LASSPAGASRDEE--GQQQRYPWL--VNVKDGSGRLPTDPAYDPRTLFIPPSAWAKFTPF 408
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI 333
+KQYW +K + D ++FFK GKFYE YE DA I H+E D K +S G+ ES
Sbjct: 409 EKQYWTIKKDHWDTVVFFKKGKFYEFYEKDALIAHREFDLK--MSDRVNMFMAGVPESSF 466
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARHTNS---------VISRKLVNVVTPSTTV-D 383
K +A GYKV ++++ E++ R N +I R+L +++T T + D
Sbjct: 467 TMWASKFIALGYKVAKVDETESALSKAMREKNEKSQPGPKEKIIRRELTSILTRGTLMGD 526
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ + ++L+IKE D S YG F D + DD + L LLMQV
Sbjct: 527 MLVDELSTYILSIKE-----DTASHSYGLCFADTGTAEFNLCGFQDDPALTTLETLLMQV 581
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
PKE++ E L + ++ + LTP + +F +A+ + YF S
Sbjct: 582 RPKEIVCERNNLSAATMRLIKNTMSAPTINPLTPRV---EFWEAAATIDELVFENYF--S 636
Query: 504 SSP---------------------------WSKALENVMQHDIGFSALGGLISHLSRLML 536
S+P + +A+ ++ H + SALGGL+ +L L +
Sbjct: 637 STPAATGAKQQSSRVPTDSSATSQRADTACFPQAILDMQSHPLVISALGGLVHYLRTLCI 696
Query: 537 DDVL---RNGDILPYKVYRDCLRMDGQTLY-LDSCVTSS 571
+ L RN + + CL +DGQTL LD SS
Sbjct: 697 ERELLSQRNFHLYDALRHGSCLLLDGQTLQNLDVLFASS 735
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L+ CV+ GKRL R W+CHPL+ + IN+R D VE L++ S + + LRKLPDLER+
Sbjct: 792 LNRCVSPFGKRLFRRWLCHPLRHIPEINDRYDAVEDLLRLSNLTGNLTTTLRKLPDLERI 851
Query: 624 LGRVKA 629
+ R+ A
Sbjct: 852 VSRIHA 857
>gi|405958979|gb|EKC25057.1| DNA mismatch repair protein Msh6 [Crassostrea gigas]
Length = 1346
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 186/306 (60%), Gaps = 20/306 (6%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
+T+ L F E+ W I +S +DVL S A + G RP I+ S +
Sbjct: 1015 DTMRRLFYSFDERYKTWDTAIQCLSVLDVLMSLAKYVGAADGVTCRPEIIEPSSDTE--- 1071
Query: 785 DNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLG---------EDSDDCLPRTLLLTGPN 834
P ++I+ HP GG +PND ++G D + + +L+TGPN
Sbjct: 1072 ----PFVEIREARHPCVTRTFGGGDFIPNDTVIGIPDELDMEEGDEQNSSSKIVLVTGPN 1127
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
MGGKSTL+R L ++AQ+GC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +E
Sbjct: 1128 MGGKSTLMRQVGLITVMAQMGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFYVELSE 1187
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954
TA++LQ AT+ SLV++DELGRGT+T+DG AIA AV R+L E + CR LF+THYH L +EF
Sbjct: 1188 TAAILQHATKHSLVLIDELGRGTATYDGTAIACAVVRELSESLCCRTLFSTHYHSLVEEF 1247
Query: 955 ASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
+ P++ L HM+C ++ + ++ + FLY+ GACP+SYG VA +A +P +VV+
Sbjct: 1248 SHDPNIRLGHMSCMVENEGD---PAEETITFLYKFARGACPKSYGFNVARLANIPDEVVK 1304
Query: 1015 AASHAA 1020
A A
Sbjct: 1305 LAKEKA 1310
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 149/522 (28%), Positives = 246/522 (47%), Gaps = 78/522 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D ++ +DP YD +TLY+P LK+ + + +Q+W +KS++ D +LFFK
Sbjct: 362 KLEFLQPDKIKDIKKKSKNDPEYDPKTLYVPDSFLKQQTPAMRQWWELKSKHYDAVLFFK 421
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYEL+ +DA +G KEL + G+ G E + L+ +GYKV RIEQ
Sbjct: 422 MGKFYELFNMDAAVGVKELG---LIYMKGEQAHSGFPEIAYSRYADMLIQKGYKVARIEQ 478
Query: 353 LETSEQAKARHTN---------SVISRKLVNVVTPST----TVDGTIG-PDAVHLLAIKE 398
ET + R N V+ R++ + T T DG I ++ +LLA+ E
Sbjct: 479 TETPDMMTERVKNMGIPATKFDKVVKREICRITTKGTQTFNVTDGDIAEANSSYLLALCE 538
Query: 399 GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+ G G YG FVD + +G DD C+ L L+ +P +V+ RG E
Sbjct: 539 KDDG-QFGQSTYGVCFVDTTIGKFQMGQFTDDRYCSRLRTLIAHFTPVQVLMP-RGRVSE 596
Query: 459 AQKALRKFSAGSAALE-LTPAMAVTDFLDASE-VKKLVQLNGYFNGSSSPWSKALENVM- 515
+L + S E L P T+F D+S+ +K L + + W + L+ ++
Sbjct: 597 KTSSLINNNLSSVIKEYLRPD---TEFWDSSKTLKVLAEEEYFKCEEEVVWPECLKKMIS 653
Query: 516 -----------QHDIGFSALGGLISHLSRLMLDDVLRN----GDILPYKVYRDCLR---- 556
++ + S+LG +I +L ++D L + + +P + ++
Sbjct: 654 DGDTLCLSAADEYSLAVSSLGAMIWYLQYSLMDQELLSMKNFEEYIPVDSEKTTIKEKSA 713
Query: 557 --------MDGQTL------------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
+DG TL L+ CVT GKRL + W+C PL + I
Sbjct: 714 FMKNQHMVLDGLTLRNLDVADLYGSQEGTLLSRLNQCVTPFGKRLFKQWLCAPLCNPSSI 773
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP------LIGK 644
N+RL+ VE L +++ V +RKLPDLER+L + + A+ C P
Sbjct: 774 NDRLNAVEDLNVVPDIMAEVIDMIRKLPDLERILSKFHSLGSAARCKTHPDSRAIFFDEA 833
Query: 645 KVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFK 686
K K++++ F S ++G ++A + + + H+ S++ K
Sbjct: 834 KYSKKKIEDFLSTIEGFKVAQKVALKF--KSHVENFTSKLLK 873
>gi|340518207|gb|EGR48449.1| DNA repair protein [Trichoderma reesei QM6a]
Length = 1205
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 183/573 (31%), Positives = 283/573 (49%), Gaps = 61/573 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD +R P DP YD RT++IPP A K S +KQYW +K D ++FFK
Sbjct: 285 RYPWL--ANIRDKEKRPPTDPDYDPRTIFIPPGAWAKFSPFEKQYWEIKQDLWDTIVFFK 342
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D+K+T R VG+ E +D V + +A+ YKV R+EQ
Sbjct: 343 KGKFYELYEKDATIGHQEFDFKMT--DRVNMRMVGVPEGSLDHWVNQFIAKQYKVARVEQ 400
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET+ + + + VISRKL ++T T VDG++ D A + +AIKE
Sbjct: 401 METNLGKEMRERQDKSGKKADKVISRKLGCILTAGTLVDGSMLQDDMAAYCVAIKESVV- 459
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+ +G AF D A + ++ DD L+ Q+ P+E++ E GL ++ +
Sbjct: 460 --DDLPAFGIAFTDTATGKFFLSGFVDDVDRTKFETLIAQIGPRELLLEKSGLSTKSLRI 517
Query: 463 LR-KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQH 517
L+ S + L P T+F DA ++ + YF W +AL+ + +
Sbjct: 518 LKNNTSPTTIWTHLKPG---TEFWDADTSRRELSCGKYFLKAEGEEEEVWPEALQELKDN 574
Query: 518 DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL------------ 562
D+ SA+GGL+S+L L L+ +L G+ YK + L +DGQTL
Sbjct: 575 DLVMSAIGGLVSYLRFLKLEAPLLSQGNFEVYKPIQKNGTLVLDGQTLTNLELFSNTVNG 634
Query: 563 --------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
L+ C+T GKRL R W+ HPL D+ IN RLD VE L + V A L
Sbjct: 635 NTDGTLFGLLNKCITPFGKRLFRQWVAHPLCDIARINERLDAVELLNDDPSVREQFASQL 694
Query: 615 RKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKE 674
K+PDLERL+ R+ A V L G + ++ + + G+ KG +D L+
Sbjct: 695 VKMPDLERLISRIHAGACKPEDFVRVLEGFEQIEYTMTLVGAF-KGGNGLLDRLI----- 748
Query: 675 GHIIPSLSR--IFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIE 732
+P+L + FD ++ L E+ +D DF D + ++ ++ +L E
Sbjct: 749 -SSMPNLEEPLAYWSTAFDRRRAKEEKLMIPESGVDEDF-DASVARIEEIKSQLDDLLAE 806
Query: 733 LFIE---KASQWSEVIHAISCIDVLRSFAVTAS 762
E K +++++ I I+ +S + +S
Sbjct: 807 KKTELKCKTLKFTDIGKEIYQIEAPKSVKIPSS 839
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 154/281 (54%), Gaps = 24/281 (8%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMH-RPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
W + I I+ +D L S A ASMS G RP + + ++ VL+ + L HP
Sbjct: 893 WLKAIKIIAQLDCLVSLA-KASMSLGEPSCRPQFVEEERS----------VLEFEELRHP 941
Query: 800 FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
+ +PNDI LG D + LLTG N GKST+LR +C+AVI+AQ+GCFVP
Sbjct: 942 CMINTVDDF-IPNDIKLGGDQ----AKINLLTGANAAGKSTVLRMSCIAVIMAQVGCFVP 996
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS+
Sbjct: 997 ARSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILAEATPRSLVILDELGRGTSS 1056
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
+DG A+A AV + I C FATHYH L EF +HP + + M +
Sbjct: 1057 YDGVAVAQAVLHHVATHIGCIGFFATHYHSLATEFENHPEIRARRMQI-------HVDDA 1109
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+ +V++ A AA
Sbjct: 1110 QRRITFLYKLEDGVAEGSFGMHCAAMCGISDRVIKRAEIAA 1150
>gi|302890002|ref|XP_003043886.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256724804|gb|EEU38173.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1201
Score = 256 bits (655), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 181/548 (33%), Positives = 266/548 (48%), Gaps = 61/548 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL +KI D RR PD+P YDKRT+YIPP A KK S + QYW +K D ++FFK
Sbjct: 282 RYPWL--AKIMDKERRTPDNPEYDKRTIYIPPAAWKKFSPFETQYWEIKQNLWDTIVFFK 339
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA +GH+E D+K+T R VG+ ES +D V + +A+ YKV R++Q
Sbjct: 340 KGKFYELYENDATVGHQEFDFKMT--DRVNMRMVGVPESSLDYWVNQFIAKQYKVARVDQ 397
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET+ + + + +I+R+L V+T T VDG + D A + +AIKE
Sbjct: 398 METNLGKEMRERQDKSGKKADKIITRELACVLTAGTLVDGGMLQDDMASYCVAIKESVV- 456
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+ +G AF D A R ++ + DD L+ Q P+E++ E L +A +
Sbjct: 457 --DDLPAFGIAFADTATGRFYLSSFVDDVDLTKFETLIAQTGPRELVLEKSKLSTKALRI 514
Query: 463 LRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHD 518
L+ ++ + L P T+F DA ++ + YF + W +AL+ D
Sbjct: 515 LKNNTSPTTIWTHLKPD---TEFWDADTTRRELGCGKYFKVKDIDDEVWPEALQQFRDDD 571
Query: 519 IGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL------------- 562
I SA+G L+S+L L L+ +L G+ Y + L +DGQTL
Sbjct: 572 IVMSAVGALVSYLRFLKLERPLLSQGNFERYNPIQKNGTLVLDGQTLINLEVFSNSVNGG 631
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L+ C+T GKRL RSW+ HPL +++ IN RLD VE L + V A L
Sbjct: 632 TEGTLFSLLNKCITPFGKRLFRSWVAHPLCNIDRINERLDAVEMLNADQGVREDFASQLV 691
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEG 675
K+PDLERL+ R+ A V L G + ++ + + G+ G + L+ M
Sbjct: 692 KMPDLERLISRIHAGACKPEDFVKVLEGFEQIEYTMSLLGAFKGGNGLVDRLISSM---- 747
Query: 676 HIIPSLSRI--FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIEL 733
P+L F FD D L E I+ DF + D E L EL
Sbjct: 748 ---PNLEEPLSFWRSAFDRRKARDDKLLIPERGIEEDF-----DESADRIEEIKQQLDEL 799
Query: 734 FIEKASQW 741
EK ++
Sbjct: 800 LAEKKKEF 807
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 151/280 (53%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I IS +D L S A ++ RP ++ Q ++ + + L HP
Sbjct: 889 WLQAIKIISQLDCLVSLAKASASLGHPSCRPQLVDQERS----------TVDFQELRHPC 938
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+ +PNDI LG + + LLTG N GKST+LR +C+AVI+AQ+GCFVP
Sbjct: 939 MMNTVDDF-IPNDIKLGGEQANIN----LLTGANAAGKSTVLRMSCIAVIMAQIGCFVPA 993
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 994 TSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1053
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF +HP + + M + +
Sbjct: 1054 DGVAVAQAVLHHVATHIGCVGFFATHYHSLATEFENHPEIRARRMQI-------HVDDEE 1106
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+ +V++ A AA
Sbjct: 1107 RRVTFLYKLEDGVAEGSFGMHCAAMCGISSRVIDRAEVAA 1146
>gi|403332180|gb|EJY65086.1| MutS domain III family protein [Oxytricha trifallax]
Length = 1185
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/302 (45%), Positives = 182/302 (60%), Gaps = 15/302 (4%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L L + F E W+ ++ I+ +D L S ++ + S G M RP + A
Sbjct: 874 LCALFQKFHEHKDLWNRTMNVITELDCLCSLSIVSGQSVGDMCRPQFVGYQGEYA----- 928
Query: 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
+L IK L HP VPN+ LL + D L LL+TGPNMGGKSTLLR TC
Sbjct: 929 NSSLLDIKQLRHPCVTLNQTKSFVPNNTLLAPNQDQTL---LLVTGPNMGGKSTLLRQTC 985
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
+AVILAQ+GC+VP + L+ D IFTR+GA+DRI+ G+STF VE ET +++Q AT S
Sbjct: 986 IAVILAQIGCYVPAQSIKLNPVDRIFTRIGASDRILEGKSTFYVEMEETKNIIQFATFKS 1045
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
L I+DELGRGTSTFDGY+IA+AV + LV I CR LFATHYH L EF V HMA
Sbjct: 1046 LAIVDELGRGTSTFDGYSIAHAVLKYLVNNIRCRSLFATHYHMLLDEFRGARGVKSYHMA 1105
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
C ++N + E++FLYR G CP S+G+ VA MAG+P+ V++AA +L +
Sbjct: 1106 C--RANEDK-----DEVMFLYRFEKGECPTSFGINVARMAGIPKNVLDAAKRKSLEFSEK 1158
Query: 1027 IG 1028
+
Sbjct: 1159 LN 1160
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 218/492 (44%), Gaps = 74/492 (15%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
+++ I D +R+P+DP YD TLYIP + + + QYW +K D +LFFK+G
Sbjct: 253 DFIKEEYIMDMEKRKPEDPEYDPTTLYIPGDKWNGFTPAMYQYWEIKVHNYDKILFFKLG 312
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYE++ DA I K LD + G K +G E +D + +V GYKV IEQ E
Sbjct: 313 KFYEIFYNDAIICQKLLD--LNWMGGAKKLHIGFPEKVLDKYLVIMVNHGYKVAVIEQTE 370
Query: 355 TSE------------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPDAVHLLAIKEG 399
T + + K + + R++ ++VT T D G + +L++K
Sbjct: 371 TPQMMERRLKEERLAKKKMEPKDKCVKREIFSMVTKGTFKDNNQSVAGYEPKFVLSVKR- 429
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
GS + G F D L+++VG DD + + LL Q+ P EVI+E + +
Sbjct: 430 -----YGSEL-GVTFFDVQTLKIYVGQFTDDEALSNFRTLLCQIRPIEVIHEREIINSDM 483
Query: 460 QKALRKFSAGSAALELTPA--MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQH 517
K L+ + P V +A E + G S W + L+ +
Sbjct: 484 LKMLKNSPVVPVFTPMVPKNCWGVIKTCNALET---------YIGPSKNWPELLQKFKEQ 534
Query: 518 D--IGFSALGGLISHLSR-LMLDDVLRNGDILPY----KVYRDCLRMDGQTL-------- 562
D + +LG I+ L L+ + G+ Y + + + +D Q L
Sbjct: 535 DAELALQSLGMAIAFLEEALIAQQTISTGEFHLYTPETQSQLEYMVLDSQALQHLEVVES 594
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
Y+D C + G+R L+ W+ PL +++ I RLD +E L+++ V
Sbjct: 595 ASGKFEGSLLHYIDHCKSPFGRRQLKRWVLSPLMNIQRIEERLDAIEDLIQHQYETDVFR 654
Query: 612 QYLRKLPDLERLLGR-----VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMD 666
L KLPD+E+LL + +K RV+A + LI ++K F L+K R+ +
Sbjct: 655 SKLSKLPDIEKLLAKIYTYSIKNRVKAIYFENVSLI-------KLKEFRILLKHFRVMEE 707
Query: 667 LL-MLMHKEGHI 677
L LM+K+
Sbjct: 708 LCESLMNKKNEF 719
>gi|189460181|ref|ZP_03008966.1| hypothetical protein BACCOP_00817 [Bacteroides coprocola DSM 17136]
gi|189433042|gb|EDV02027.1| DNA mismatch repair protein MutS [Bacteroides coprocola DSM 17136]
Length = 874
Score = 256 bits (654), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 250/879 (28%), Positives = 393/879 (44%), Gaps = 157/879 (17%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV--- 326
++ KQY+++K+++ D ++ F+ G FYE Y DA + L +T G+ + V
Sbjct: 9 LTPMMKQYFDLKAKHPDAVMLFRCGDFYETYSEDAVTASEILGITLTKRANGQGKTVEMA 68
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G +D + KL+ G +V +QLE + T ++ R + +VTP + +
Sbjct: 69 GFPHHALDTYLPKLIRAGRRVAICDQLEDP-----KTTKKLVKRGITELVTPGVAISDNV 123
Query: 387 GPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
L+ KE N G G AF+D + + + LL +
Sbjct: 124 -------LSYKENNFLAAVHFGKTACGVAFLDISTGEFLTA----EGPFDYIDKLLNNFA 172
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSA--ALEL-----TPAMAVTDFLDASEVKKL--VQ 495
PKEV++E RG +K + + + GS EL T A A L E K L
Sbjct: 173 PKEVLFE-RG-----KKPMFEGNFGSKFFTFELDDWVFTEASAREKLLKHFETKNLKGFG 226
Query: 496 LNGYFNG--SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
+ NG +S + L+ + IG I+ L+R+ D +R +
Sbjct: 227 VEHLKNGIIASGAILQYLDMTQHYQIGH------ITSLARIEEDKYVRLDKFTVRSLELI 280
Query: 554 CLRMDGQTLYLD---SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
+G T LD ++ G RLL+ WI PLKDV+ IN RLDVVEY + + +
Sbjct: 281 GSMNEGGTSLLDVIDHTISPMGARLLKRWIVFPLKDVKPINERLDVVEYFFREPDFKDFI 340
Query: 611 AQYLRKLPDLERLL-----GRV--------KARVQA-----SSCI-----VLPLIGK--- 644
+ L + DLER++ GR+ K +QA ++C+ L IG+
Sbjct: 341 EEKLHLIGDLERIVSKAAVGRISPREVVQLKVALQAIEPIKNACLNADNESLRKIGEQLN 400
Query: 645 -------KVLKQ-------QVKVFGSLVKGLRIAMD------------LLMLMHKEGHI- 677
K+ K+ V G + G+ +D LL + +E +
Sbjct: 401 LCASIRDKIAKEINNDPPLLVNKGGVIADGVNQELDELRHIAYSGKDYLLQVQQRESELT 460
Query: 678 -IPSL----SRIFKPPIFDGSDGLDKF---------LTQFEAAIDSDFPDYQNHDVTDLD 723
IPSL + +F I + DK L E I + +Y+ L
Sbjct: 461 GIPSLKIAYNNVFGYYIEVRNTHKDKVPADWIRKQTLVNAERYITQELKEYEE---KILG 517
Query: 724 AETLSILIE--LFIEKASQWSEVIHAISC-------IDVLRSFAVTASMSSGAMHRPLIL 774
AE +++E L+ E ++ ++ I AI +D L SFA A +
Sbjct: 518 AEDKILILETRLYNELVAELADFIPAIQINATQIARLDCLLSFANAARAN---------- 567
Query: 775 PQSKNPAVRQDNGGPVLKIKGLWHPFALGE--NGGLPVPNDILLGEDSDDCLPRTLLLTG 832
+ P V D+ +L IK HP + G + ND+ L ++ + +++TG
Sbjct: 568 -KYIRPVVADDD---ILDIKQGRHPVIEKQLPAGEKYIANDVYLDTETQ----QIIIITG 619
Query: 833 PNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVEC 892
PNM GKS LLR T L ++AQ+GCFVP E + L D IFTR+GA+D I GESTF+VE
Sbjct: 620 PNMAGKSALLRQTALITLMAQIGCFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEM 679
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPL 950
E A +L + SLV+ DELGRGTST+DG +IA+A+ + E R R LFATHYH L
Sbjct: 680 NEAADILNNLSPRSLVLFDELGRGTSTYDGISIAWAIVEHIHEHKRARARTLFATHYHEL 739
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
S P + K+ + + + D +++FL +L G S+G+ VA MAG+P+
Sbjct: 740 NDMEESFPRI---------KNYNVSVKEVDNKVIFLRKLERGGSEHSFGIHVAKMAGMPK 790
Query: 1011 KVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLK 1049
+V+ A ++K + SS + E ++H++ ++
Sbjct: 791 TIVKRADEILHQLEKENRQEGMSSHHKVEPKTVHQDGVQ 829
>gi|346322336|gb|EGX91935.1| DNA mismatch repair protein msh6 [Cordyceps militaris CM01]
Length = 1207
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 183/576 (31%), Positives = 284/576 (49%), Gaps = 68/576 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL SKIRD +R P DP YD RT++IPP A S +KQYW +K D ++FFK
Sbjct: 288 RYSWL--SKIRDKEKREPGDPDYDPRTIFIPPLAWNNFSPFEKQYWEIKQNLWDTIVFFK 345
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D+K+T R VG+ ES +D V + +A+ YKV R++Q
Sbjct: 346 KGKFYELYENDATIGHQEFDFKMT--DRVNMRMVGVPESVLDHWVNQFIAKQYKVARVDQ 403
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET+ + + + +ISR+L V+T T VDG++ D A H +AIKE
Sbjct: 404 METNLGKEMRERQDKTGKKADKIISRQLACVLTAGTLVDGSMLQDDMAAHCVAIKESVV- 462
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+G V+G AFVD A R ++ DD + Q+ P+E++ E L +A +
Sbjct: 463 --DGLPVFGIAFVDTATGRFFLTEFVDDVDLTKFETFIAQIGPREMLLEKSHLSTKANRV 520
Query: 463 LRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN---GSSSPWSKALENVMQHDI 519
L+ ++ + T +F DA ++ + YF+ S W +ALE +D+
Sbjct: 521 LKNNTSPTTI--WTHLKHGVEFWDADTCRRELTAANYFSTEADSDGGWPEALEKQRDNDV 578
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL-------------- 562
SA+G L+ +L L ++ +L + Y + L +DGQTL
Sbjct: 579 LMSAVGALVWYLRFLKVERPLLSQSNFSMYNPIQKNGTLVLDGQTLINLEIFSNSVNGGS 638
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+ HPL++++ IN RLD V+ L + V A L K
Sbjct: 639 DGTLFQLLNKCITPFGKRLFRQWVAHPLQNIDRINERLDAVDMLNNDPSVREQFASQLVK 698
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIAMDLLMLMHKE 674
+PDLERL+ R+ A C P +VL +Q++ +LV + LL
Sbjct: 699 MPDLERLISRIHA------CACKPEDFVRVLDGFEQIEYTMTLVSSFKGGNGLL------ 746
Query: 675 GHIIPSLSRIFKP-----PIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSI 729
+I S+ + +P FD D+ + E I+ DF D + ++ ++ +
Sbjct: 747 DRLIASMPSLEEPLAYWRNAFDRRKAKDEKILIPERGIEEDF-DASLERMENIKSQLQEL 805
Query: 730 LIELFIE---KASQWSEVIHAISCIDVLRSFAVTAS 762
L E E KA ++++V I I+ ++ V +S
Sbjct: 806 LTEKKGELKCKALKFTDVGKEIFQIEAPKAIKVPSS 841
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 152/280 (54%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W I AI+ +D L S A +S RP + Q ++ +++ + L HP
Sbjct: 895 WLSAIQAIAQLDCLVSLAKASSCLGEPSCRPQFVDQDRS----------LVEFEELRHPC 944
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L G +PNDI LG + + LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 945 MLNTTGDF-IPNDIKLGGEQANIN----LLTGANAAGKSTVLRMSCIAVIMAQIGCYVPA 999
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1000 VSAKLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILAEATPRSLVILDELGRGTSSY 1059
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF +HP + + M + +
Sbjct: 1060 DGVAVAQAVLHHVATHIGCVGFFATHYHSLATEFENHPEIRARRMQI-------HVDDAE 1112
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+ V+E A AA
Sbjct: 1113 RRITFLYKLEDGVAEGSFGMHCAAMCGISNTVIERAEVAA 1152
>gi|222529489|ref|YP_002573371.1| DNA mismatch repair protein MutS [Caldicellulosiruptor bescii DSM
6725]
gi|254766611|sp|B9MJU0.1|MUTS_ANATD RecName: Full=DNA mismatch repair protein MutS
gi|222456336|gb|ACM60598.1| DNA mismatch repair protein MutS [Caldicellulosiruptor bescii DSM
6725]
Length = 863
Score = 255 bits (652), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 228/839 (27%), Positives = 380/839 (45%), Gaps = 140/839 (16%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA + KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK ++ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAKG-----IVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
I + C + FVD + ++ + +D L + +
Sbjct: 116 DNISTANNFI-------CCISKDRSEFALTFVDVSTGEMYSCLLEED--LQKLVNEIGKY 166
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
SP E++ N + E + L+K T + + +F+D + ++++
Sbjct: 167 SPSEILISN--IEDELYEFLKK--------NCTSFVQMIEFVDLQKCHEIIENQINVGKI 216
Query: 504 SSPWSKALENVMQH-----DIGFSALGGLISHLSR--LMLD-DVLRNGDILPYKVYRDCL 555
++ N++++ I F + + + L +D + RN ++ + R
Sbjct: 217 DEKLILSVGNLLKYLTETQKISFDYIRRFEFYRVQNYLQIDINTKRNLELTESIIQRS-- 274
Query: 556 RMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
R + LD TS G RLL+ WI PL D+ IN RLD VE L N ++ V + L
Sbjct: 275 RKNSLLGILDQTKTSMGSRLLKKWIERPLIDIIEINKRLDSVEELKSNYSTLVQVEELLS 334
Query: 616 KLPDLERLLGRVKAR-VQASSCI-------VLPLIGKKVLKQQVKVFGSLVKGLRIAMDL 667
++ D+ERL + + V A + VLP + + + ++ + +GL D+
Sbjct: 335 RMYDIERLSSKFAYKNVNAKDLLSLKKSIEVLPTLKQFLSSFDSELLKEIYEGLDTLEDI 394
Query: 668 LMLMH-----------KEGHIIP-----------SLSRIFKPPIFDGSD----------- 694
L+ KEG II ++S+ K + + +
Sbjct: 395 YALIDSSINEDAPVSLKEGGIIKEGFNEEVDRLRNISKNSKELLVEYEEKERNLTGIKNL 454
Query: 695 --GLDKFLTQFEAAIDSDF---PD-------------YQNHDVTDLDAETLSI---LIEL 733
G +K + S++ PD Y ++ L+ E L LIEL
Sbjct: 455 RIGYNKVFGYYIEVTKSNYSLVPDRYIRKQTLANAERYITEELKKLEDEILGADQKLIEL 514
Query: 734 FIEKASQWSEVIHA-----------ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ + + I A I+ +DVL SFA R I + P V
Sbjct: 515 EYQLFCEIRDRIEAQIERIQKTASNIANLDVLCSFA-----------RIAIDNEYVRPNV 563
Query: 783 RQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
G + IK HP G G +PND L D R L++TGPNM GKST
Sbjct: 564 YL---GDRIYIKNGRHPVVEKMIGRGNFIPNDTEL----DQAENRVLIITGPNMAGKSTY 616
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R L VI+AQ+GCFVP + + + D IF+R+GA+D I +G+STF+VE +E A++L+
Sbjct: 617 MRQVALIVIMAQMGCFVPADEAHIGVVDKIFSRIGASDDISSGQSTFMVEMSEVANILKN 676
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKEFASHPH 959
AT SL+I DE+GRGTST+DG +IA+AV + + +I + LFATHYH LT+
Sbjct: 677 ATPKSLIIFDEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTE------- 729
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
L+ K+ + + + ++FL ++ G C SYG+ VA +AG+P++V++ A
Sbjct: 730 --LEERIPGVKNYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVLKRAEE 786
>gi|312793677|ref|YP_004026600.1| DNA mismatch repair protein muts [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180817|gb|ADQ40987.1| DNA mismatch repair protein MutS [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 863
Score = 255 bits (652), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 238/891 (26%), Positives = 395/891 (44%), Gaps = 167/891 (18%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA + KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK ++ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAKG-----IVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
I + C + FVD + ++ + +D L LL ++
Sbjct: 116 ENISTANNFI-------CCISKDRSEFALTFVDVSTGEMYSCLLEED-----LQKLLNEI 163
Query: 444 ---SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
+P E+ L ++ L +F + T + + +F+D + ++++
Sbjct: 164 GKYNPSEI------LISRSEDELYEFLKKNC----TSFVQMIEFVDLQKCYEVIENQINV 213
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSR---------LMLD-DVLRNGDILPYKV 550
++ N++++ I + ++ R L +D + RN ++ +
Sbjct: 214 GKIDERLILSVGNLLKYLIETQKIS--FDYIRRYEFYRVQNYLQIDINTKRNLELTESII 271
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
R R + LD TS G RLL+ WI PL DV IN RLD VE L N +++ +
Sbjct: 272 QRS--RKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSNYSILVQI 329
Query: 611 AQYLRKLPDLERLLGRVKAR-VQASSCI-------VLPLIGKKVLKQQVKVFGSLVKGLR 662
+ L ++ D+ERL + + V A + VLP + K + ++ + +GL
Sbjct: 330 EELLSRMYDIERLSSKFAYKNVNAKDLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGLD 389
Query: 663 IAMDLLMLMH-----------KEGHIIP-----------SLSRIFKPPIFDGSD------ 694
D+ L+ KEG II ++S+ K + +
Sbjct: 390 TLEDIYALIDSSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLT 449
Query: 695 -------GLDKFLTQFEAAIDSDF---PD-------------YQNHDVTDLDAETLSI-- 729
G +K + S++ PD Y ++ L+ E L
Sbjct: 450 GIKNLRIGYNKVFGYYIEVTKSNYSLVPDRYIRKQTLANAERYITEELKKLEDEILGADQ 509
Query: 730 -LIELFIEKASQWSEVIHA-----------ISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
LIEL + + + I A I+ +DVL SFA A
Sbjct: 510 KLIELEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFARIAI--------------- 554
Query: 778 KNPAVRQDNG-GPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
N VR + G + K HP G G +PND L D R L++TGPNM
Sbjct: 555 DNEYVRPNVCLGDRIYFKNGRHPVVEKMIGRGNFIPNDTEL----DQAENRVLIITGPNM 610
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GKST +R L VI+AQ+GCFVP + + + D IF+R+GA+D I +G+STF+VE +E
Sbjct: 611 AGKSTYMRQVALIVIMAQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEV 670
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKE 953
A++L+ AT SL+I DE+GRGTST+DG +IA+AV + + +I + LFATHYH LT+
Sbjct: 671 ANILKNATPKSLIIFDEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTE- 729
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
L+ K+ + + + ++FL ++ G C SYG+ VA +AG+P++V+
Sbjct: 730 --------LEERIPGVKNYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVL 781
Query: 1014 EAASHA-------------ALAMKKSIGESFKSSEQRSEFSSLHEEWLKTI 1051
+ A ++K I + F +EQ FS EE + I
Sbjct: 782 KRAEEILKQLEEADINRKNIRKLRKEIKKEF--TEQIDFFSYKKEEIIDKI 830
>gi|357511353|ref|XP_003625965.1| DNA mismatch repair protein Msh6-1 [Medicago truncatula]
gi|355500980|gb|AES82183.1| DNA mismatch repair protein Msh6-1 [Medicago truncatula]
Length = 1312
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/329 (43%), Positives = 192/329 (58%), Gaps = 21/329 (6%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T +IE F E +QW +++ A + +DVL + A+ + G RP +
Sbjct: 965 TFQRMIERFCEHHTQWKQLVSATAELDVLINLAIASDYYEGPTCRPSFV------GTLCT 1018
Query: 786 NGGPVLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
N P + K L HP + G VPNDI +G +LLTGPNMGGKSTLLR
Sbjct: 1019 NEAPYIYAKSLGHPVLRSDTLGKSAFVPNDITIGGPDQASF---ILLTGPNMGGKSTLLR 1075
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
CLAVILAQ+G VP E LS D IF R+GA D IM G+STFL E +ETA++L AT
Sbjct: 1076 QVCLAVILAQVGADVPSESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSAT 1135
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
++SLV LDELGRGTST DG AIA +V LV + CR LF+THYH L ++ P V L
Sbjct: 1136 RNSLVALDELGRGTSTSDGQAIAESVLEHLVRSVQCRGLFSTHYHRLAIDYLKDPKVCLA 1195
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
HMAC S +E G E+ FLYRL++GACP+SYG+ VA +AG+P V++ A +
Sbjct: 1196 HMACQVGSGNE----GLDEVTFLYRLSAGACPKSYGVNVARLAGLPTSVLQKADAKSREF 1251
Query: 1024 KKSIGESFKSSEQRSEFSSLHEEWLKTIV 1052
+ + G + R+E +S ++ W+ I+
Sbjct: 1252 EATYG------KYRTEPNSSNQSWVDEII 1274
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 162/501 (32%), Positives = 243/501 (48%), Gaps = 97/501 (19%)
Query: 250 PDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHK 309
P D YD RTLY+PP+ ++ +S QKQ+W KS++MD +LFFK+GKFYEL+E+DA +G K
Sbjct: 316 PGDENYDSRTLYLPPDFVRNLSGGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAK 375
Query: 310 ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS--- 366
EL+ + C G E VE+L +GY+V +EQ ET EQ + R S
Sbjct: 376 ELELQYMRGEQPHC---GFPEKNFTVNVERLARKGYRVLVVEQTETPEQMELRRKESGSK 432
Query: 367 --VISRKLVNVVTPSTTVDG---TIGPDAVHLLAIKE--GNCGPDNGSVVYGFAFVDCAA 419
V+ R++ VV+ T +DG + P+A +L+A+ E N + YG VD A
Sbjct: 433 DKVVRREICAVVSKGTLIDGEFMSTNPEAAYLMALTEYCENNPNEMSERTYGVCVVDVAT 492
Query: 420 LRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAM 479
RV +G NDD+ C+AL ++L ++ P E++ + L E ++AL K + EL P +
Sbjct: 493 SRVILGQFNDDSECSALCSILSEIRPVEIVKPAKLLSAETERALLKHTRNPLVNELIPNV 552
Query: 480 AVTDFLDASE-VKKLVQLNGYFNGSSSPWS--KALENVM------QHD--IGFSALGGLI 528
+F DA + + L ++ G+ N S+ L +V+ HD SALGG +
Sbjct: 553 ---EFWDADKTLDHLKRIYGHNNDVSAQDGGLDCLPDVLVELVKTDHDSRSALSALGGAL 609
Query: 529 SHLSRLMLDD-VLRNG--DILPYKVYR----------DCLRMDG-------------QTL 562
+L + LD+ +LR ++LP V+ D + ++ TL
Sbjct: 610 YYLKQAFLDEQLLRFAQFELLPCSVFSGLASKPYMVLDAVALENLEIFENSRNGESSGTL 669
Query: 563 Y--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV---------- 610
Y L+ CVT+ GKRLL+SW+ PL VE I R + V L +S + V
Sbjct: 670 YAQLNQCVTAFGKRLLKSWLARPLYHVESIKERQEAVAGLKVHSLTMHFVFDSDVPLRYS 729
Query: 611 -----------------------AQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVL 647
+ L KLPD+ERLL RV + AS K VL
Sbjct: 730 DSFPPRLLDFFFHGVNLPHTLEFRKALSKLPDMERLLARVLSSRDASGRNA----NKVVL 785
Query: 648 -----KQQVKVFGSLVKGLRI 663
K+Q++ F S ++GL +
Sbjct: 786 YEDSSKKQLQEFISALRGLEL 806
>gi|351695606|gb|EHA98524.1| DNA mismatch repair protein Msh6 [Heterocephalus glaber]
Length = 1363
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 201/326 (61%), Gaps = 18/326 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P NP P L+
Sbjct: 1043 FDKNYKDWQCAVDCIAVLDVLLCLANYSQGGDGPMCRPVILLPGEDNP--------PFLE 1094
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KG HP + G +PNDIL+G E ++ +L+TGPNMGGKSTL+R L
Sbjct: 1095 LKGSRHPCIMKTFFGDDFIPNDILIGCEEQEENGKAYCVLVTGPNMGGKSTLIRQAGLLT 1154
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1155 VMAQMGCYVPAEVCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATGHSLVL 1214
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1215 VDELGRGTATFDGTAIANAVVKELAETIRCRTLFSTHYHSLVEDYSKNVAVRLGHMACMV 1274
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K + +
Sbjct: 1275 ENECEDPSQ--ENITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK-VNQ 1331
Query: 1030 S---FKSSEQRSEFSSLHEEWLKTIV 1052
S F+ SE SS+ E L ++
Sbjct: 1332 SLRLFREVCLASERSSIDAEALHKLL 1357
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 161/551 (29%), Positives = 247/551 (44%), Gaps = 101/551 (18%)
Query: 168 NEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMR----LLQDS------ 217
+ + G D+P +V P+ KR+ IG KKNSS ++ + +L ++
Sbjct: 288 DSESEGLDSP--VKVAPKRKRM--GIGKIGFKKNSSRTETPSTTKRAAGILSETKNTLSA 343
Query: 218 VAGVKNCEEEADTT--------------SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIP 263
+G +N E +A + EWL K RD +RRRPD P +D TLY+P
Sbjct: 344 FSGPQNSEAQAQGSRGGDDGSGSSVWYHETLEWLKKEKRRDEHRRRPDHPDFDASTLYVP 403
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC 323
+ L + +++W +KSQ D+++F+KVGKFYELY +DA IG EL G
Sbjct: 404 EDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIGVNELGLVFM---KGNW 460
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR--------HTNSVISRKLVNV 375
G E + LV +GYKV R+EQ ET E +AR + V+ R++ +
Sbjct: 461 AHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDKVVRREICRI 520
Query: 376 VTPSTTVDGTIGPD-----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDD 430
+T T + D + +LL++KE + +YG FVD + + ++G +DD
Sbjct: 521 ITKGTQTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRLYGVCFVDTSLGKFFIGQFSDD 580
Query: 431 ASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
C+ L+ P +V++E L E + L+ + S L P + F DA++
Sbjct: 581 RHCSRFRTLVAHYPPVQVLFEKGNLSVETKTILKGTLSSSLQEGLIPG---SQFWDATKT 637
Query: 491 KKLVQLNGYFNG-----------------SSSPWSKALENVMQHDIGFSALGGLISHLSR 533
+ + GYF SS S L + ++ SALGG + +L +
Sbjct: 638 LQTLLEGGYFTEKLNEDTGVMLPTVLKGMSSESDSIGLTPGEKSELALSALGGCVFYLKK 697
Query: 534 LMLDDVL-------------------RNGDILPYKVYR---DCLRMDGQTLYL------- 564
++D L R G I R D + ++ ++L
Sbjct: 698 CLIDQELLSMANFEEYIPLDSDMVSIRPGAIFTKANQRMVLDAVTLNNLEVFLNGTNGST 757
Query: 565 --------DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
D+C T GKRLL+ W+C PL IN+RLD VE LM + + VA L+K
Sbjct: 758 EGTLLERIDTCYTPFGKRLLKQWLCAPLCSPFAINDRLDAVEDLMDVPDKISEVADLLKK 817
Query: 617 LPDLERLLGRV 627
LPDLERLL R+
Sbjct: 818 LPDLERLLSRI 828
>gi|344996159|ref|YP_004798502.1| DNA mismatch repair protein mutS [Caldicellulosiruptor lactoaceticus
6A]
gi|343964378|gb|AEM73525.1| DNA mismatch repair protein mutS [Caldicellulosiruptor lactoaceticus
6A]
Length = 863
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 238/891 (26%), Positives = 396/891 (44%), Gaps = 167/891 (18%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA + KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK ++ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAKG-----IVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
I + C + FVD + ++ + +D L LL ++
Sbjct: 116 ENISTANNFI-------CCISKDRSEFALTFVDVSTGEMYSCLLEED-----LQKLLNEI 163
Query: 444 ---SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
+P E+ L ++ L +F + T + + +F+D + ++++
Sbjct: 164 GKYNPSEI------LISRSEDELYEFLKKNC----TSFVQMIEFVDLQKCYEVIENQINV 213
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSR---------LMLD-DVLRNGDILPYKV 550
++ N++++ I + ++ R L +D + RN ++ +
Sbjct: 214 GKIDERLILSVGNLLKYLIETQKIS--FDYIRRFEFYRVQNYLQIDINTKRNLELTESII 271
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
R + + LD TS G RLL+ WI PL DV IN RLD VE L N +++ +
Sbjct: 272 QRS--KKNSLLGILDRTKTSMGSRLLKKWIERPLIDVIEINRRLDSVEQLKSNYSILVQI 329
Query: 611 AQYLRKLPDLERLLGRVKAR-VQASSCI-------VLPLIGKKVLKQQVKVFGSLVKGLR 662
+ L ++ D+ERL + + V A + VLP + K + ++ + +GL
Sbjct: 330 EELLSRMYDIERLSSKFAYKNVNAKDLLSLKRSIEVLPALKKLLSSFSAQLLKEIYEGLD 389
Query: 663 IAMDLLMLMH-----------KEGHIIP-----------SLSRIFKPPIFDGSD------ 694
D+ L+ KEG II ++S+ K + +
Sbjct: 390 TLEDIYALIDSSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNSKELLVQYEEKERNLT 449
Query: 695 -------GLDKFLTQFEAAIDSDF---PD-------------YQNHDVTDLDAETLSI-- 729
G +K + S++ PD Y ++ L+ E L
Sbjct: 450 GIKNLRIGYNKVFGYYIEVTKSNYSLVPDRYIRKQTLANAERYITEELKKLEDEILGADQ 509
Query: 730 -LIELFIEKASQWSEVIHA-----------ISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
LIEL + + + I A I+ +DVL SFA A
Sbjct: 510 KLIELEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFARIAI--------------- 554
Query: 778 KNPAVRQDNG-GPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
N VR + G + IK HP G G +PND L D R L++TGPNM
Sbjct: 555 DNEYVRPNVCLGDRIYIKNGRHPVVEKMIGRGNFIPNDTEL----DQAENRVLIITGPNM 610
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GKST +R L VI+AQ+GCFVP + + + D IF+R+GA+D I +G+STF+VE +E
Sbjct: 611 AGKSTYMRQVALIVIMAQMGCFVPADEAHIGIVDKIFSRIGASDDISSGQSTFMVEMSEV 670
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKE 953
A++L+ AT SL+I DE+GRGTST+DG +IA+AV + + +I + LFATHYH LT+
Sbjct: 671 ANILKNATPKSLIIFDEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTLFATHYHELTE- 729
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
L+ K+ + + + ++FL ++ G C SYG+ VA +AG+P++V+
Sbjct: 730 --------LEERIPGVKNYRVDVKEEGKNIIFLRKIVRGGCDSSYGIHVARLAGIPEEVL 781
Query: 1014 EAASHA-------------ALAMKKSIGESFKSSEQRSEFSSLHEEWLKTI 1051
+ A ++K I + F +EQ FS EE + I
Sbjct: 782 KRAGEILKQLEEADINRKNIRKLRKEIKKEF--TEQIDFFSYKKEEIIDKI 830
>gi|452846757|gb|EME48689.1| hypothetical protein DOTSEDRAFT_141977 [Dothistroma septosporum
NZE10]
Length = 1041
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/469 (34%), Positives = 238/469 (50%), Gaps = 47/469 (10%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
D + ++ WL + I+DA+R PD P YDKRT+YIPP A S +KQYW +K ++ D +
Sbjct: 110 DPSDRYPWL--ASIQDADRNPPDHPDYDKRTIYIPPMAWNNFSPFEKQYWEIKQKFWDTI 167
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D VA+GYK+
Sbjct: 168 VFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEASLDHWANMFVAKGYKIA 225
Query: 349 RIEQLETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
R++Q+E++ K + VI R+L +V+T T V+G++ D A + AIKE
Sbjct: 226 RVDQMESALGKDMRERNIKGKKEEKVIRRELASVLTSGTLVEGSMLQDDMATYCAAIKES 285
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+G +G AFVD A + + I+DDA + Q P E++ E + +A
Sbjct: 286 EL---DGKPHFGIAFVDTATAQFQLTEIHDDADMTKFETFVAQTRPGEILLEKGCVSAKA 342
Query: 460 QKALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFN----GSSSPWSKALENV 514
+ L+ + + L P +FL A + + + YF+ + S W L+
Sbjct: 343 LRMLKNNTPPTTIWNHLKPD---KEFLSADKTRMKIDGEAYFDKCVEDNHSAWPSVLQEA 399
Query: 515 MQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL--------- 562
+I FSALGGLI +L L ++ D++ G+ Y R L +DGQ+L
Sbjct: 400 KNKEIVFSALGGLIWYLGTLKIERDLVTLGNFAWYDPIRKASSLVLDGQSLINLEIFANT 459
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ CVT GKR+LR W+CHPL D IN R D +E L + V+
Sbjct: 460 FDGSTEGTLFTMLNRCVTPFGKRMLRQWVCHPLADARKINQRFDAIEALNADGTVMDRFC 519
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG 660
L KLPDLERL+ RV A + V L G + ++ + + G+ G
Sbjct: 520 ASLSKLPDLERLISRVHAGRCRAQDFVKVLEGFEQIEYTMSLLGAFGSG 568
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/281 (41%), Positives = 157/281 (55%), Gaps = 23/281 (8%)
Query: 741 WSEVIHAISCIDVLRSFA-VTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
W ++ +D L S A +ASM S P + V +DN VL + L HP
Sbjct: 723 WLAAAKIVAQLDCLISLAKASASMGS---------PSCRPEFVDEDNAQSVLVFQTLRHP 773
Query: 800 FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
E +PNDI LG D+ LLTG N GKST+LR TC+AVILAQ+GC+VP
Sbjct: 774 CI--ETTTNFIPNDIGLGGDA----AAITLLTGANAAGKSTVLRMTCVAVILAQIGCYVP 827
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
C+ ++ D I +RLGA D I G+STF+VE +ET +L +AT SLVILDELGRGTS+
Sbjct: 828 CDSARMTPVDRIMSRLGAHDNIFAGQSTFMVELSETKKILAEATPRSLVILDELGRGTSS 887
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
+DG A+A AV + + FATHYH L EF HP + + MA +
Sbjct: 888 YDGVAVAQAVLHHVATHVGALGYFATHYHSLAAEFQHHPEIVAKRMAVHVDDDR------ 941
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+++ FLY+L +G SYG+ A M G+P KV++ A AA
Sbjct: 942 -RDVTFLYQLENGVAEGSYGMHCAAMCGIPNKVIDRAEEAA 981
>gi|403260724|ref|XP_003922808.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 1228
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 186/295 (63%), Gaps = 13/295 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL ++ P L++
Sbjct: 909 FDKNYKDWQSAVECIAVLDVLLCLADYSRGGDGPMCRPVIL--------LPEDTAPFLEL 960
Query: 794 KGLWHPFALGENGGLP-VPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L V+
Sbjct: 961 KGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLVV 1020
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV++
Sbjct: 1021 MAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILSHATAHSLVLV 1080
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC +
Sbjct: 1081 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVE 1140
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1141 NECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1193
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 211/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 239 LEWLKEEKRRDEHRRRPDHPDFDGSTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 298
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 299 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 355
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 356 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 415
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 416 EDSSGHIRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 475
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 476 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLKGMT 532
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 533 SESDSIGLTPGERSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 592
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
+ R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 593 AVFTKAYQRMVLDAVTLNNLEIFLNGTNGSAEGTLLERVDTCHTPFGKRLLKQWLCAPLC 652
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 653 SPYAINDRLDAIEDLMAVPDKISEVVELLKKLPDLERLLSKI 694
>gi|344291831|ref|XP_003417633.1| PREDICTED: DNA mismatch repair protein Msh6 [Loxodonta africana]
Length = 1282
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/296 (44%), Positives = 185/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P+ NP P L+
Sbjct: 962 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDDNP--------PFLE 1013
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KG HP G +PNDIL+G E+ + +L+TGPNMGGKSTL+R L
Sbjct: 1014 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEGNGKAYCVLVTGPNMGGKSTLMRQAGLLA 1073
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1074 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVL 1133
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L + ++ + V L HMAC
Sbjct: 1134 VDELGRGTATFDGTAIADAVVQELAENIKCRTLFSTHYHSLVENYSQNVAVRLGHMACMV 1193
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1194 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1247
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 216/462 (46%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD RRRPD P +D TL++P + L + +++W +KSQ D+++F+KV
Sbjct: 292 LEWLKEEKRRDERRRRPDHPDFDASTLFVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 351
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 352 GKFYELYHMDALIGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 408
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 409 ETPEMMEARCRKMAHISKHDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 468
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + +VG +DD C+ L+ P +V++E L E +
Sbjct: 469 EDSSGHTRVYGVCFVDTSLGKFYVGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSAETR 528
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN-----GSSSPWSKALENVM 515
L+ + S L P + F DA++ +++ +GYF GS + L+ +
Sbjct: 529 MILKSSLSSSLQEGLMPG---SQFWDAAKTLRILLEDGYFTEKLNEGSGVMLPQVLKGMT 585
Query: 516 ------------QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPY-------------- 548
+ ++ SALGG I +L + ++D ++L + Y
Sbjct: 586 SESDSIGLTPGEKSELALSALGGCIFYLKKCLIDQELLSMANFEEYTPLDSDMVSAAKPG 645
Query: 549 --------KVYRDCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
++ D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 646 AIFVKANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERIDTCHTPFGKRLLKQWLCAPLC 705
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V L+KLPDLERLL ++
Sbjct: 706 SPFPINDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKI 747
>gi|426335494|ref|XP_004029255.1| PREDICTED: DNA mismatch repair protein Msh6 [Gorilla gorilla gorilla]
Length = 1230
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 910 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 961
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 962 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1021
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1022 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1081
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1082 VDELGRGTATFDGTAIANAVVKELAETIQCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1141
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1142 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1195
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 240 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 299
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 300 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 356
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 357 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 416
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 417 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 476
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 477 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 533
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 534 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 593
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 594 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 653
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 654 NPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 695
>gi|403260722|ref|XP_003922807.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 1358
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/295 (44%), Positives = 186/295 (63%), Gaps = 13/295 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL ++ P L++
Sbjct: 1039 FDKNYKDWQSAVECIAVLDVLLCLADYSRGGDGPMCRPVIL--------LPEDTAPFLEL 1090
Query: 794 KGLWHPFALGENGGLP-VPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L V+
Sbjct: 1091 KGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLVV 1150
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV++
Sbjct: 1151 MAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILSHATAHSLVLV 1210
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC +
Sbjct: 1211 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVE 1270
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1271 NECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1323
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 211/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 369 LEWLKEEKRRDEHRRRPDHPDFDGSTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 428
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 429 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 485
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 486 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 545
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 546 EDSSGHIRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 605
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 606 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLKGMT 662
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 663 SESDSIGLTPGERSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 722
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
+ R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 723 AVFTKAYQRMVLDAVTLNNLEIFLNGTNGSAEGTLLERVDTCHTPFGKRLLKQWLCAPLC 782
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 783 SPYAINDRLDAIEDLMAVPDKISEVVELLKKLPDLERLLSKI 824
>gi|219109807|ref|XP_002176657.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411192|gb|EEC51120.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1423
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 196/341 (57%), Gaps = 29/341 (8%)
Query: 696 LDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLR 755
L+ F+ +FE A + A + ++ F S W+ A S +D +
Sbjct: 1091 LEHFVQEFENAYEVQ---------KKRKARGMQLIFAKFDSMRSLWAAAAQATSLLDAIG 1141
Query: 756 SFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP---FALGENGGLPVPN 812
+ A TAS + L PQ +P +R + G HP ++G N +PN
Sbjct: 1142 ALAQTASKPGYTRAKILDCPQHASPTIR---------VTGGRHPCIESSIGSNDF--IPN 1190
Query: 813 DILLG-EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871
D+ LG E S D R LLL+GPNMGGKSTLLR TCL ILAQ+GCFVP E C L+ D I
Sbjct: 1191 DLSLGTETSQDNASRVLLLSGPNMGGKSTLLRQTCLISILAQIGCFVPAEDCALTPIDRI 1250
Query: 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931
+TRLGATDRI+ G+STF VE ETA+ L+ AT+ SLVI+DELGRGTSTFDG AIA +V +
Sbjct: 1251 YTRLGATDRILLGQSTFFVELAETAAALRGATRRSLVIMDELGRGTSTFDGTAIASSVVK 1310
Query: 932 QLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK-----SNSENYSKGDQELVFL 986
LV+R C LFATHYH L +E+ + +V L HM C + S EN K + + FL
Sbjct: 1311 HLVDRSKCLSLFATHYHSLLEEWKHNRNVRLGHMECIVENGITTSRPENEEKDESTITFL 1370
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
Y L G CP+S+G+ VA +AG+P+ V+ A + ++ +
Sbjct: 1371 YTLGEGVCPKSFGINVARLAGLPEDVLSNAKRISSEFEQEV 1411
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 50/250 (20%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEAL-----KKMSASQKQYWNVKSQYMDVLLFFKVGKFY 297
RDA R PD P YD+RTL + M+ + +Q+W++K++Y D +L FK GKFY
Sbjct: 344 RDAQGRTPDHPDYDRRTLKVNSRDWLNVTGGNMTDAVQQWWDLKARYADTVLLFKTGKFY 403
Query: 298 ELYELDAEIGHKELDWKITLSGV----GKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
E++ DA++G + + G+ G G E ++LV GYKV R+EQ
Sbjct: 404 EMFHADADVG-------VQVCGLLYMKGHVAHAGFPEISYGPMADQLVRAGYKVARVEQT 456
Query: 354 ETSE----QAKARHTNS-----VISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGP- 403
ET + + KA H + V++R++ +++T T G + D H +A +G GP
Sbjct: 457 ETPDALAVRKKAHHRRNGPAPKVVNREVCSILTLGTRTFGYLD-DDTH-IATGQGGVGPL 514
Query: 404 --------DNGS--------------VVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
D G YG VD V +G DD + + LL
Sbjct: 515 LAIRETLVDQGERQDDVEVEVQQAPVCEYGITLVDAVHGVVTIGQFADDVRRSRMDTLLT 574
Query: 442 QVSPKEVIYE 451
+P E++ E
Sbjct: 575 NFAPSEILVE 584
>gi|126304451|ref|XP_001382177.1| PREDICTED: DNA mismatch repair protein Msh6 [Monodelphis domestica]
Length = 1423
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/304 (44%), Positives = 192/304 (63%), Gaps = 26/304 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + + W + I+ DVL + S M RP+IL V ++ P LK+
Sbjct: 1101 FDKNYTDWQTAVECIAVFDVLLCLS-NYSRGDARMCRPVIL-------VPDEDTQPFLKL 1152
Query: 794 KGLWHPFALGEN--GGLPVPNDILLG---EDSDD------CLPRTLLLTGPNMGGKSTLL 842
KG HP + N G +PNDI++G EDS+D C+ L+TGPNMGGKSTL+
Sbjct: 1153 KGARHP-CITNNFFGDDFIPNDIMIGCKEEDSEDGNWDAYCV----LVTGPNMGGKSTLM 1207
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L VI+AQ+GC+VP E+C + D +FTRLGA+DRIM+GESTF VE ETAS+LQ A
Sbjct: 1208 RQAGLLVIMAQMGCYVPAEVCNFTPVDRVFTRLGASDRIMSGESTFFVEMNETASILQHA 1267
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T+ SLV++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L
Sbjct: 1268 TEHSLVLMDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVCL 1327
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HMAC ++ E+ S+ + + FLY+ +GACP+SYG A +A +P+++++ A
Sbjct: 1328 GHMACMVENECEDPSQ--ETITFLYKFINGACPKSYGFNAARLARLPEEIIQKGHRKARE 1385
Query: 1023 MKKS 1026
+K+
Sbjct: 1386 FEKT 1389
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/461 (29%), Positives = 214/461 (46%), Gaps = 75/461 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K +DA RRRPD YD T+++P + L + +++W +KSQ D+++F+KV
Sbjct: 434 LEWLKEGKRKDACRRRPDHSDYDPNTVHVPEDFLNTCTPGMRRWWQIKSQNFDLVIFYKV 493
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 494 GKFYELYHMDAVIGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 550
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIGPDA-VHLLAIKEGN 400
ET E +AR + V+ R++ ++T T +DG + +LL +KE
Sbjct: 551 ETPEMMEARCRKLSHISRFDRVVRREICRIITKGTQTYSVLDGEPSESSNKYLLCVKEKE 610
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ +YG F+D + + ++G +DD C+ L+ +P ++++E L E +
Sbjct: 611 EEASGHTRLYGVCFIDTSVGKFYMGQFSDDRHCSRFRTLVAHYTPAQILFEKGNLSVETR 670
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN-----GSSSPWSKALENVM 515
K L+ + S LTP + F DA++ K + GYF P K++ +
Sbjct: 671 KVLKGSLSSSIQEGLTPG---SQFWDAAKTLKTLLEEGYFKEKLNVAELPPVLKSMTSES 727
Query: 516 ---------QHDIGFSALGGLISHLSRLMLD--------------------DVLRNGDIL 546
+ ++ SALGG + +L + ++D ++ G +
Sbjct: 728 DTIGLTPNDKSELALSALGGCVFYLKKCLIDYELLSMANFEEYIPIDADMVKAVKPGAVF 787
Query: 547 PYKVYRDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKD 586
+ R + +D TL +DSC T GKRLL+ W+C PL +
Sbjct: 788 AKRDRR--MVLDAVTLSNLEILQNAVNGSTEGTLLERIDSCCTPFGKRLLKHWLCAPLCN 845
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + V L+KLPDLERLL ++
Sbjct: 846 PSSINDRLDAMEDLMAVPDKTSEVVDLLKKLPDLERLLNKI 886
>gi|355751303|gb|EHH55558.1| hypothetical protein EGM_04790 [Macaca fascicularis]
Length = 1235
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 941 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 992
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 993 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1052
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1053 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1112
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1113 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1172
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1173 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1226
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P ++ TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 271 LEWLKEEKRRDEHRRRPDHPDFNASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 330
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 331 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 387
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 388 ETPEMMEARCRKMVHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 447
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 448 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 507
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 508 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLKGMT 564
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG I +L + ++D L R+G
Sbjct: 565 SESDSIGLTPGEKSELALSALGGCIFYLKKCLIDQELLSMANFEEYIPLDSDIVSTTRSG 624
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 625 AIFTKACQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 684
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 685 SPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 726
>gi|194375916|dbj|BAG57302.1| unnamed protein product [Homo sapiens]
Length = 1230
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 910 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 961
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 962 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1021
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1022 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1081
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1082 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1141
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1142 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1195
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 240 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 299
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 300 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 356
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 357 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 416
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 417 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 476
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 477 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 533
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 534 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 593
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 594 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 653
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 654 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 695
>gi|355565681|gb|EHH22110.1| hypothetical protein EGK_05312 [Macaca mulatta]
Length = 1235
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 941 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 992
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 993 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1052
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1053 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1112
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1113 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1172
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1173 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1226
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P ++ TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 271 LEWLKEEKRRDEHRRRPDHPDFNASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 330
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 331 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 387
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 388 ETPEMMEARCRKMVHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 447
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 448 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 507
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 508 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLKGMT 564
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG I +L + ++D L R+G
Sbjct: 565 SESDSIGLTPGEKSELALSALGGCIFYLKKCLIDQELLSMANFEEYIPLDSDIVSTTRSG 624
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 625 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 684
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 685 SPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 726
>gi|397504284|ref|XP_003822731.1| PREDICTED: DNA mismatch repair protein Msh6 [Pan paniscus]
Length = 1299
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 979 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1030
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1031 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1090
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1091 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1150
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1151 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1210
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1211 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1264
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 309 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 368
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 369 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 425
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 426 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 485
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 486 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 545
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 546 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 602
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 603 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 662
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 663 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 722
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 723 NPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 764
>gi|302843362|ref|XP_002953223.1| hypothetical protein VOLCADRAFT_105835 [Volvox carteri f.
nagariensis]
gi|300261610|gb|EFJ45822.1| hypothetical protein VOLCADRAFT_105835 [Volvox carteri f.
nagariensis]
Length = 1515
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 184/315 (58%), Gaps = 29/315 (9%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMS---SGAMHRPLILPQSKNPAVR 783
L+ L+ F+ + W V+ A++ +D L S A A MS G M RP ++P + +
Sbjct: 1105 LTRLLVKFVSHKALWVAVVEAVADLDALMSLAAHA-MSPPDGGPMCRPKLVPPAARDSAA 1163
Query: 784 QDNG-----GPVLKIKGLWHPFAL-GENGGLPVPNDILLGED-SDDCLPRTLLLTGPNMG 836
G G + HP + G N G VPND+ LG S P +LL+GPNMG
Sbjct: 1164 GKTGDSEPSGATFDAVAMRHPAGISGRNNGAFVPNDVRLGRGGSCGGAPPFILLSGPNMG 1223
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKSTLLR CLA +LAQ+G VP E LS AD IF R+GA D IMTG+STF +E ETA
Sbjct: 1224 GKSTLLRQVCLATVLAQIGACVPAESLTLSPADAIFVRMGARDAIMTGQSTFFIELAETA 1283
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
++L KAT DSLV LDELGRGT+T DG A+A AV + L CR LFATHYH L+ E A+
Sbjct: 1284 AMLAKATSDSLVALDELGRGTATLDGAAVAGAVLQHLATVTGCRGLFATHYHHLSDEHAN 1343
Query: 957 HPHVTLQHMACAFKSNSEN-------YSKGD-----------QELVFLYRLTSGACPESY 998
P V + HMACA + ++ S G+ +E+ FLYRLT GACP+SY
Sbjct: 1344 DPQVAVMHMACAVEGAADGEEAATAPSSVGNGTGGAGASSGAEEVTFLYRLTPGACPKSY 1403
Query: 999 GLQVAVMAGVPQKVV 1013
G VA +AG+P KVV
Sbjct: 1404 GTNVARLAGLPPKVV 1418
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 130/259 (50%), Gaps = 30/259 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK--KMSASQKQYWNVKSQYMDVLLF 290
+F +L P IRDAN+RRPD P YD RTLYIPP K K+S Q+Q+WN K+ D +L
Sbjct: 386 RFSFLHPDNIRDANQRRPDHPEYDPRTLYIPPGWFKEFKISEGQQQWWNFKAHNFDSVLL 445
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
FK+GKFYE++E+DA +G + L G+ G E D E L GY+V +
Sbjct: 446 FKMGKFYEMFEMDAYVGVEVLGLTFMR---GEQPHAGFPEVKYADMAESLARAGYRVVVV 502
Query: 351 EQL----ETSEQAKARHTN---------SVISRKLVNVVTPSTTVDGTI---GPDAVHLL 394
EQ+ ET E R+ +V+ R+ V V++ T VD + PDA ++L
Sbjct: 503 EQVMKGTETPEMLAKRNEQRRMQGKKQANVVDRQKVAVLSRGTLVDAEMVASRPDASYVL 562
Query: 395 AIKEGNCGPDN---------GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
A+ E + G D G+V G VD A+ +V VG DD + L L + P
Sbjct: 563 AVAEMDVGGDEQEAAADKAAGAVRIGLCAVDAASGQVLVGEFVDDEVRSTLRTQLTALQP 622
Query: 446 KEVIYENRGLCKEAQKALR 464
+E++ + L LR
Sbjct: 623 QELVLPRKALSATTSHVLR 641
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN-SEVVMVVAQYLRKLPDLER 622
LD+C T G+R LR W+C PL + I R D V L +E V + L + DLER
Sbjct: 834 LDNCATPFGRRRLRQWLCRPLGRIPDIQARQDAVAQLCGELAEAVGQARKLLASVSDLER 893
Query: 623 LLGRVKARV-------QASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEG 675
+ R+ A A++ ++ GK+ +V S++K LR A L + +
Sbjct: 894 AVARLHASTVSGASGRDAANVVLYEDAGKR----RVAALTSVLKDLRAAHGALSRLREAM 949
Query: 676 HIIPSLSRIFKPPIFD 691
S + + +FD
Sbjct: 950 QGGGGGSELLRRIVFD 965
>gi|322706069|gb|EFY97651.1| DNA mismatch repair protein msh6 [Metarhizium anisopliae ARSEF 23]
Length = 1222
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/434 (35%), Positives = 224/434 (51%), Gaps = 47/434 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD +R P DP YD R++YIPP A K S +KQYW +K D ++FFK
Sbjct: 303 RYPWL--ANIRDKEKRAPSDPEYDPRSIYIPPMAWNKFSPFEKQYWEIKQNLWDTIVFFK 360
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D+K+T R VG+ ES +D V + +A+ YKV R++Q
Sbjct: 361 KGKFYELYENDATIGHQEFDFKMT--DRVNMRMVGVPESSLDHWVNQFIAKQYKVARVDQ 418
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET+ + + + VISR+L V+T T VDG + D A + +AIKE
Sbjct: 419 METNLGKEMRERQDRSGKKADKVISRELSCVLTAGTLVDGGMLQDDMAAYCVAIKESVV- 477
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+ +G AF D A R + DD + Q+ P+E++ E L A +
Sbjct: 478 --DDLPAFGIAFADTATGRFQLSGFTDDVDLTKFETFVAQIGPRELLIEKSHLSTRALRI 535
Query: 463 LRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP---WSKALENVMQHD 518
L+ ++ + L P T+F DA ++ ++ YF S W + L+ D
Sbjct: 536 LKNNTSPTTIWTHLKPG---TEFWDADTSRRELKCGNYFTTQESEDDVWPEVLQQYKDDD 592
Query: 519 IGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL------------- 562
+ SA+GGL+S+L L+L+ +L G+ Y + L +DGQTL
Sbjct: 593 LVMSAVGGLVSYLKFLLLERPLLSQGNFEKYSPIQKNGTLVLDGQTLVNLELFSNTSNGS 652
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L+ C+T GKRL R W+ HPL D++ IN RLD V+ L + V A L
Sbjct: 653 SEGTLFSLLNKCITPFGKRLFRQWVAHPLCDIQRINERLDAVDMLNADPTVREQFASQLV 712
Query: 616 KLPDLERLLGRVKA 629
K+PDLERL+ RV A
Sbjct: 713 KMPDLERLISRVHA 726
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 157/296 (53%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S L + F + W I ++ +D L S A +S ++ +P PQ
Sbjct: 894 EIASRLFQKFDVDYNTWLLAIKIVAQLDCLVSLA----KASNSLAQPSCRPQF------V 943
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D + + L HP + +PND+ LG D + LLTG N GKST+LR
Sbjct: 944 DEERSFVDFEELRHPCMINTVDDF-IPNDVKLGGDQ----AKINLLTGANAAGKSTVLRM 998
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 999 SCVAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1058
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1059 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGCVGFFATHYHSLATEFENHPEIRAKR 1118
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + ++++ FLY+L G S+G+ A M G+ +V+E A AA
Sbjct: 1119 MQI-------HVDDEERKVTFLYKLEDGVAEGSFGMHCAAMCGISDRVIERAEVAA 1167
>gi|402890846|ref|XP_003908684.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 2 [Papio anubis]
Length = 1230
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 910 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 961
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 962 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1021
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1022 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1081
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1082 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1141
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1142 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1195
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P ++ TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 240 LEWLKEEKRRDEHRRRPDHPDFNASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 299
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 300 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 356
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 357 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 416
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 417 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 476
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 477 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVLLPQVLKGMT 533
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG I +L + ++D L R+G
Sbjct: 534 SESDSIGLTPGEKSELALSALGGCIFYLKKCLIDQELLSMANFEEYIPLDSDIVSTTRSG 593
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 594 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 653
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 654 SPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 695
>gi|332226866|ref|XP_003262610.1| PREDICTED: DNA mismatch repair protein Msh6, partial [Nomascus
leucogenys]
Length = 1290
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 970 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1021
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1022 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1081
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1082 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1141
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1142 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1201
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1202 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1255
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 214/462 (46%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 300 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 359
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 360 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 416
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 417 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 476
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 477 EDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 536
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 537 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLTDDIGVMLPQVLKGMT 593
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 594 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 653
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 654 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 713
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPD+ERLL ++
Sbjct: 714 NPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDIERLLSKI 755
>gi|410217568|gb|JAA06003.1| mutS homolog 6 [Pan troglodytes]
gi|410261614|gb|JAA18773.1| mutS homolog 6 [Pan troglodytes]
gi|410295678|gb|JAA26439.1| mutS homolog 6 [Pan troglodytes]
Length = 1360
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|19548099|gb|AAL87401.1| mutS homolog 6 (E. coli) [Homo sapiens]
Length = 1358
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|4504191|ref|NP_000170.1| DNA mismatch repair protein Msh6 [Homo sapiens]
gi|68067672|sp|P52701.2|MSH6_HUMAN RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName:
Full=G/T mismatch-binding protein; Short=GTBP;
Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit;
Short=p160
gi|1294813|gb|AAC50461.1| G/T mismatch binding protein [Homo sapiens]
gi|6063479|gb|AAB39212.2| hMSH6 protein [Homo sapiens]
gi|13279008|gb|AAH04246.1| MutS homolog 6 (E. coli) [Homo sapiens]
gi|119620614|gb|EAX00209.1| mutS homolog 6 (E. coli), isoform CRA_b [Homo sapiens]
gi|123987976|gb|ABM83824.1| mutS homolog 6 (E. coli) [synthetic construct]
gi|307684536|dbj|BAJ20308.1| mutS homolog 6 [synthetic construct]
Length = 1360
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 202 bits (514), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|312127451|ref|YP_003992325.1| DNA mismatch repair protein muts [Caldicellulosiruptor hydrothermalis
108]
gi|311777470|gb|ADQ06956.1| DNA mismatch repair protein MutS [Caldicellulosiruptor hydrothermalis
108]
Length = 863
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 242/905 (26%), Positives = 398/905 (43%), Gaps = 195/905 (21%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA + KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQKVRDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK ++ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAKG-----IVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ + C + FVD + ++ + +D L LL ++
Sbjct: 116 ENLSTANNFI-------CCISKDRSEFALTFVDVSTGEMYSCLLEED-----LQKLLNEI 163
Query: 444 ---SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
SP E+ L + L +F + A + + +F+D + ++++
Sbjct: 164 GKYSPSEI------LISHIEDELYEFLKKNCA----SFVQMIEFVDLQKCYEVIE----- 208
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLS---RLMLDDVLRNGDILPYKVYR--DCL 555
+ K E ++ ++G L+ +L+ ++ D + R ++ YR + L
Sbjct: 209 --NQINVGKIDERLIL------SVGNLLKYLTETQKISFDYIRR------FEFYRVQNYL 254
Query: 556 RMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
++D T LD TS G RLL+ WI PL DV IN RLD
Sbjct: 255 QIDINTKRNLELTESIIQRSKKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIEINRRLD 314
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR-VQASSCI-------VLPLIGKKVL 647
VE L N ++ V + L ++ D+ERL + + V A + VLP + K +
Sbjct: 315 SVEELKSNYSTLVQVEELLSRMYDIERLSSKFAYKNVNAKDLLSLKRSIEVLPALKKLLS 374
Query: 648 KQQVKVFGSLVKGLRIAMDLLMLMH-----------KEGHIIP-----------SLSRIF 685
++ + +GL D+ L+ KEG II ++S+
Sbjct: 375 SFSAQLLKEIYEGLDTLEDIYALVDNSINEDAPVTLKEGGIIKDGFNEEVDRLRNISKNS 434
Query: 686 KPPIFDGSD-------------GLDKFLTQFEAAIDSDF---PD-------------YQN 716
K + + G +K + S++ PD Y
Sbjct: 435 KELLVQYEEKERNLTGIKNLRIGYNKVFGYYIEVTKSNYSLVPDRYIRKQTLANAERYIT 494
Query: 717 HDVTDLDAETLSI---LIELFIEKASQWSEVIHA-----------ISCIDVLRSFAVTAS 762
++ L+ E L LIEL + + + I A I+ +DVL SFA
Sbjct: 495 EELKKLEDEILGADQKLIELEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFA---- 550
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSD 821
R I + P V G + IK HP G G +PND L D
Sbjct: 551 -------RIAIDNEYVRPNVYL---GDRIYIKNGRHPVVEKMIGRGNFIPNDTEL----D 596
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
R L++TGPNM GKST +R L VI+AQ+GCFVP + + + D IF+R+GA+D I
Sbjct: 597 QAENRVLIITGPNMAGKSTYMRQVALIVIMAQMGCFVPADEAHIGIVDKIFSRIGASDDI 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINC 939
+G+STF+VE +E A++L+ AT SL++ DE+GRGTST+DG +IA+AV + + +I
Sbjct: 657 SSGQSTFMVEMSEVANILKNATPKSLIVFDEVGRGTSTYDGLSIAWAVLEYVADKSKIGA 716
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LFATHYH LT+ L+ K+ + + + ++FL ++ G C SYG
Sbjct: 717 KTLFATHYHELTE---------LEERIPGVKNYRVDVKEEGKNIIFLRKIVRGGCDSSYG 767
Query: 1000 LQVAVMAGVPQKVVEAASHA-------------ALAMKKSIGESFKSSEQRSEFSSLHEE 1046
+ VA +AG+P++V++ A ++K I + F +EQ FS EE
Sbjct: 768 IHVARLAGIPEEVLKRAEEILKQLEEADINRKNIRKLRKEIKKEF--TEQMDFFSYKKEE 825
Query: 1047 WLKTI 1051
+ I
Sbjct: 826 IIDKI 830
>gi|402890844|ref|XP_003908683.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 1 [Papio anubis]
Length = 1360
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P ++ TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFNASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 607 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVLLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG I +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCIFYLKKCLIDQELLSMANFEEYIPLDSDIVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 SPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|1840467|gb|AAB47425.1| bacterial MutS homolog [Homo sapiens]
Length = 1360
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|310796497|gb|EFQ31958.1| MutS domain V [Glomerella graminicola M1.001]
Length = 1229
Score = 253 bits (647), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 178/549 (32%), Positives = 271/549 (49%), Gaps = 63/549 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D N++ P DP YD T+YIPP A K S +KQYW +K + D ++FFK
Sbjct: 308 RYPWL--ANIIDINKKPPGDPDYDPTTVYIPPMAWNKFSPFEKQYWEIKQKLWDTVVFFK 365
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 366 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQ 423
Query: 353 LETS----------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGN 400
+E++ AK + + +I R+L ++T T VDG++ D A + +IKE
Sbjct: 424 MESALGKEMRERDDASAKNKKVDKIIRRELACILTGGTLVDGSMLQDDLATYCASIKESI 483
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ +G FVDCA + ++ DD + Q+SP+E+I E + +
Sbjct: 484 I---DDKPAFGITFVDCATGQFFISEFEDDVDLTKFETFVAQISPRELILEKSRI---ST 537
Query: 461 KALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQ 516
KALR ++ + + + + ++F DA ++ + YF +G W + L
Sbjct: 538 KALRILKNNTSPMTIWNYLKSSSEFWDADTTRRELDSGDYFATEDGRDETWPETLAQARD 597
Query: 517 HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL----------- 562
D+ SA G L+ +L L L+ D+L G+ Y + R+ L +DGQTL
Sbjct: 598 KDLLMSAFGSLVQYLRVLKLEGDLLSQGNFEWYTPIQRNGTLILDGQTLINLEVFSNTVN 657
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ CVT GKRL R W+CHPL D++ IN RLD V+ L + V
Sbjct: 658 GGPEGTLFTLLNRCVTPFGKRLFRQWVCHPLCDIKKINERLDAVDMLNSDRGVREQFTSQ 717
Query: 614 LRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
+ K+PDLERL+ R+ A V L G + ++ + + GS G + LL M
Sbjct: 718 MTKMPDLERLISRIHAASCKPEDFVRVLEGFEQIEYTMGLLGSFGGGNGLVDRLLASM-- 775
Query: 674 EGHIIPSLSRI--FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILI 731
P+LS + FD D+ + E +I+ DF + Q+ + D+ E L
Sbjct: 776 -----PNLSEPLSYWKTAFDRKKARDERIFIPERSIEQDFDNSQDR-IEDIKQE----LQ 825
Query: 732 ELFIEKASQ 740
EL +K S+
Sbjct: 826 ELLGKKQSE 834
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 154/280 (55%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
WS+ I IS +D L S A +S RP + Q ++ V++ + L HP
Sbjct: 917 WSQSIRIISQLDCLISLAKASSSLGEPSCRPQFIDQERS----------VVEFEELRHPC 966
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L +PNDI LG S + LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 967 MLNAVADF-IPNDIQLGGGS----AKINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPA 1021
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1022 TSALLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1081
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + + C FATHYH L EF +HP + + M + +
Sbjct: 1082 DGVAVAQAVLHHVATHVGCVGFFATHYHSLAAEFENHPEIRPRRMQI-------HVDEEQ 1134
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLY+L G S+G+ A M G+ +V+E A AA
Sbjct: 1135 RRVTFLYKLEDGVAQGSFGMHCAAMCGISGRVIERAEVAA 1174
>gi|388453415|ref|NP_001253005.1| DNA mismatch repair protein Msh6 [Macaca mulatta]
gi|380812114|gb|AFE77932.1| DNA mismatch repair protein Msh6 [Macaca mulatta]
gi|383417799|gb|AFH32113.1| DNA mismatch repair protein Msh6 [Macaca mulatta]
gi|384946650|gb|AFI36930.1| DNA mismatch repair protein Msh6 [Macaca mulatta]
Length = 1360
Score = 253 bits (647), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P ++ TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFNASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMVHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 607 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG I +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCIFYLKKCLIDQELLSMANFEEYIPLDSDIVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 SPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|2696086|dbj|BAA23674.1| GTBP-N [Homo sapiens]
Length = 1360
Score = 253 bits (647), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|297667666|ref|XP_002812093.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 2 [Pongo abelii]
Length = 1232
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL ++ P LK+
Sbjct: 912 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVIL--------LPEDTRPFLKL 963
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 964 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1023
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1024 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1083
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1084 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1143
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1144 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1197
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 213/462 (46%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 242 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 301
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 302 GKFYELYHMDALIGVTELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 358
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 359 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 418
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 419 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 478
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 479 TILKSSLSSSLQEGLLPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLRGMT 535
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 536 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 595
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 596 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 655
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L++LPDLERLL ++
Sbjct: 656 NPFAINDRLDAIEDLMVVPDKISEVVELLKRLPDLERLLSKI 697
>gi|410349455|gb|JAA41331.1| mutS homolog 6 [Pan troglodytes]
Length = 1360
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILVHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|322699711|gb|EFY91470.1| DNA mismatch repair protein msh6 [Metarhizium acridum CQMa 102]
Length = 1220
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/434 (35%), Positives = 224/434 (51%), Gaps = 47/434 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD +R P DP YD RT+YIPP A K S +KQYW +K D ++FFK
Sbjct: 301 RYPWL--ANIRDKEKRAPSDPEYDPRTIYIPPMAWNKFSPFEKQYWEIKQNLWDTIVFFK 358
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D+K+T R VG+ ES +D V + +A+ YKV R++Q
Sbjct: 359 KGKFYELYENDATIGHQEFDFKMT--DRVNMRMVGVPESSLDHWVNQFIAKQYKVARVDQ 416
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET+ + + + VISR+L V+T T VDG++ D A + +AIKE
Sbjct: 417 METNLGKEMRERQDRSGKKADKVISRELSCVLTAGTLVDGSMLQDDMAAYCVAIKESVV- 475
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+ +G AF D A R + DD + Q++P+E++ E L A +
Sbjct: 476 --DDLPAFGIAFADTATGRFQLSGFTDDVDLTKFETFVAQIAPRELLIEKSHLSTRALRI 533
Query: 463 LRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFN---GSSSPWSKALENVMQHD 518
L+ ++ + L P ++F DA ++ ++ YF G W + L+ D
Sbjct: 534 LKNNTSPTTIWTHLKPG---SEFWDADTSRRELKCGNYFTTQEGEDDVWPEVLQQYKDDD 590
Query: 519 IGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL------------- 562
+ SA+G L+S+L L L+ +L G+ Y + L +DGQTL
Sbjct: 591 LVMSAVGALVSYLKFLQLERPLLSQGNFEKYSPIQKNGTLVLDGQTLVNLELFSNTSNGS 650
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L+ C+T GKRL R W+ HPL D++ IN RLD V+ L + V A L
Sbjct: 651 SEGTLFSLLNKCITPFGKRLFRQWVAHPLCDIQRINERLDAVDMLNADPTVREQFASQLV 710
Query: 616 KLPDLERLLGRVKA 629
K+PDLERL+ R+ A
Sbjct: 711 KMPDLERLISRIHA 724
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 157/296 (53%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S L + F + W I ++ +D L S A +S A+ +P PQ
Sbjct: 892 EIASRLFQKFDVDYNTWLLAIKIVAQLDCLVSLA----KASNALGQPSCRPQF------V 941
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D + + L HP + +PND+ LG D + LLTG N GKST+LR
Sbjct: 942 DEERSFVDFEELRHPCMINAVDDF-IPNDVKLGGDQ----AKINLLTGANAAGKSTVLRM 996
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 997 SCVAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1056
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1057 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGCVGFFATHYHSLATEFENHPEIRARR 1116
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + ++++ FLY+L G S+G+ A M G+ +V+E A AA
Sbjct: 1117 MQI-------HVDDAERKVTFLYKLEDGVAEGSFGMHCAAMCGISDRVIERAEVAA 1165
>gi|194388224|dbj|BAG65496.1| unnamed protein product [Homo sapiens]
Length = 1058
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 738 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 789
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 790 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 849
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 850 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 909
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 910 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 969
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 970 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1023
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 68 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 127
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 128 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 184
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 185 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 244
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 245 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 304
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 305 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 361
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 362 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 421
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 422 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 481
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 482 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 523
>gi|332813367|ref|XP_003309101.1| PREDICTED: DNA mismatch repair protein Msh6 [Pan troglodytes]
Length = 1399
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1079 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1130
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1131 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1190
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1191 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1250
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1251 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1310
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1311 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1364
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 409 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 468
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 469 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 525
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 526 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 585
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 586 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 645
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 646 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 702
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 703 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 762
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 763 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 822
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 823 NPYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 864
>gi|291386823|ref|XP_002709926.1| PREDICTED: mutS homolog 6 [Oryctolagus cuniculus]
Length = 1361
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 186/296 (62%), Gaps = 13/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL +N A P L++
Sbjct: 1040 FDKNYKDWHSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGENTA-------PFLEL 1092
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G ++ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1093 KGSRHPCITKTFFGDDFIPNDILIGCEEDEEENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1152
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1153 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVL 1212
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1213 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNDAVRLGHMACMV 1272
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1273 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1326
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 211/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RDA+RRRPD P +D TL++P + L + +++W +KSQ D+++F+KV
Sbjct: 370 LEWLKKEKRRDAHRRRPDHPDFDASTLHVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKHDRVVRREICRIITKGTQTYSVLEGDPSENYSKFLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + +G DD C+ L+ P +V++E L E +
Sbjct: 547 EDSSGHTRVYGVCFVDTSLGKFSIGQFADDRHCSRFRTLVAHYPPAQVLFEKGNLSVETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA-LENVM---- 515
L+ + S L P + F DA++ + + GYF S+ S L V+
Sbjct: 607 AVLKGSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEGYFTEKSNEESGVLLPQVLKGMT 663
Query: 516 ------------QHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
+ ++ SALGG + +L + ++D L R G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSATRPG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
+ R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AVFSKASQRMVLDAVTLNNLEVFLNGTNGSTEGTLLEKIDTCYTPFGKRLLKHWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + V V L+KLPDLERLL ++
Sbjct: 784 SPCAINDRLDAIEDLMAVPDKVSEVVDLLKKLPDLERLLSKI 825
>gi|297667664|ref|XP_002812092.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 1 [Pongo abelii]
Length = 1362
Score = 253 bits (645), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 185/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL ++ P LK+
Sbjct: 1042 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVIL--------LPEDTRPFLKL 1093
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1094 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1153
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1154 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1213
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1214 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1273
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1274 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1327
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 213/462 (46%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 372 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 431
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 432 GKFYELYHMDALIGVTELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 488
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 489 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 548
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 549 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 608
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + GYF +
Sbjct: 609 TILKSSLSSSLQEGLLPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLRGMT 665
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 666 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 725
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 726 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 785
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L++LPDLERLL ++
Sbjct: 786 NPFAINDRLDAIEDLMVVPDKISEVVELLKRLPDLERLLSKI 827
>gi|149242560|pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
gi|149242564|pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
gi|149242568|pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
gi|149242572|pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP
BOUND TO Msh2 Only
gi|149242576|pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE T
INSERT
Length = 1022
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 702 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 753
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 754 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 813
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 814 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 873
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 933
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 934 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 32 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 91
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 92 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 148
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 149 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 208
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 209 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 268
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 269 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 325
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 326 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 385
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 386 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 445
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 446 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 487
>gi|325188354|emb|CCA22891.1| PREDICTED: similar to G/T mismatch binding protein p [Albugo
laibachii Nc14]
Length = 1191
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 195/345 (56%), Gaps = 30/345 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E +W + + ++ +D +S AV ++ S RPL++ + + ++G P +
Sbjct: 868 FDENHIEWVQAVRFLAVLDCYQSLAVVSAHSEN-YSRPLVM------SAKSNDGIPFIDF 920
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
KG H G +PND LG D L +LL+GPNMGGKSTLLR TCL ++AQ
Sbjct: 921 KGGVHATMAGNEHF--IPNDTTLGLDGRGSL---MLLSGPNMGGKSTLLRQTCLIALMAQ 975
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GCFVP C +S D IFTR+GATD ++ G+ST VE ETA++L +TQ SLVILDEL
Sbjct: 976 IGCFVPATNCRMSPFDRIFTRIGATDNLLAGQSTLYVELAETATILNHSTQHSLVILDEL 1035
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTSTFDG AIA +V L+ R+ CR +FATHYH L +E+ + V L HMAC
Sbjct: 1036 GRGTSTFDGTAIASSVVEYLLRRVGCRSMFATHYHSLVEEYQNDSKVALSHMACMIDPKE 1095
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
E+ ++ FLY+L+ G CP SYG VA++A +P++V++ A + + S+ KS
Sbjct: 1096 EH------KVTFLYKLSPGMCPRSYGTNVAILAQLPEQVIQCAIAKSKQFELSLQNYAKS 1149
Query: 1034 SEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELK 1078
+ S + E ++T + D L LW E +
Sbjct: 1150 FAETSHLHAQVESLMRT------------PEPQMDVLLSLWQEAR 1182
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 232/496 (46%), Gaps = 71/496 (14%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
WL + D + RPD YD RTLY+PP LKK + + Q+W VKS+ MD +LFFKVGK
Sbjct: 207 WLKTERC-DIDGNRPDSSNYDPRTLYVPPNFLKKETPAMIQWWEVKSRNMDTVLFFKVGK 265
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLET 355
FYEL+ +DA++G KEL+ + G+ G E D +LV +GY+V R+EQ ET
Sbjct: 266 FYELFHMDADVGFKELNL---IYMKGEKAHSGFPEIAHDKMASQLVQKGYRVARVEQTET 322
Query: 356 SEQAKARHTNS-----VISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSV 408
E K R+ NS V+ R++ ++V+P G + D +L +KE + V
Sbjct: 323 PEMMKIRNANSKQKSKVVRREICSMVSPGLNSFGCLLSDDPCTRMLVLKEVQTKQGSALV 382
Query: 409 -VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS 467
YG +D +G ND L LL Q E I E R +A K + KF
Sbjct: 383 PRYGVCVLDTPTACFQLGEFNDTVQRDRLKTLLAQYRIVEFICE-RSETAKATKQIIKFG 441
Query: 468 AGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKAL----ENVMQHD--IGF 521
A A +T + ++F AS+ + +Q YF S P S A EN+++ D +
Sbjct: 442 APDAV--ITELKSGSEFWSASKTVQEIQNAQYFTNSGWPSSIAQYLTSENLVEIDGELAL 499
Query: 522 SALGGLISHLSRLMLDDVLRN----GDILP--YKVYRDC----------------LRMDG 559
SALGG I L R ++D L + + +P +V C +D
Sbjct: 500 SALGGCIWQLRRGIVDKELLSMCNFKNYIPSDQQVRSSCQGTAVQMGTPELNQRYAVLDS 559
Query: 560 QTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
QTL LD TS GKRL + W+ PL V I +RLD V+
Sbjct: 560 QTLSNLEILRNNRNGKRNGSLINILDKTATSFGKRLFQEWVVKPLCQVADITDRLDAVQE 619
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV-------KARVQASSCIVLPLIGKKVLKQQVK 652
LM N E V + +KLPDLER+L R+ +AR S ++ ++ +++
Sbjct: 620 LMANMETVTQIRNCFKKLPDLERVLFRIHTLGSADRARDHPDSRAIMYESNTYNIR-KIR 678
Query: 653 VFGSLVKGLRIAMDLL 668
F + + G AMDL+
Sbjct: 679 DFVAALNGFESAMDLI 694
>gi|312873745|ref|ZP_07733790.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2052A-d]
gi|311090743|gb|EFQ49142.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 2052A-d]
Length = 854
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 240/880 (27%), Positives = 396/880 (45%), Gaps = 178/880 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSNSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDKQIFLKK--AGITLSQPVKLSKEHAEVSYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ ++L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKHLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS-----LSRIFKPPIFDGSDG----- 695
F + L+ DL++ L KEG II S L R ++ + +G
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDR-YRDAMMNGKKWLADMA 441
Query: 696 -----------------------------------LDKF-----LTQFEAAIDSDFPDYQ 715
LD++ LT E I + +
Sbjct: 442 NSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRYMRKQTLTNAERYITVELKE-- 499
Query: 716 NHDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSG 766
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 -HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNY 558
Query: 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDC 823
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 559 VC-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN-- 601
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++
Sbjct: 602 ---IFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLIS 658
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G+STF+VE +E + L+ AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LF
Sbjct: 659 GKSTFMVEMSEANTALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLF 718
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
ATHYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 719 ATHYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVA 769
Query: 1004 VMAGVPQKVVEAASHAALAMKK-SIGESFKSSEQRSEFSS 1042
+AG+P KV+ A+H ++K S ++ S EQ F S
Sbjct: 770 QLAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLDLFGS 809
>gi|301611818|ref|XP_002935421.1| PREDICTED: DNA mismatch repair protein Msh6 [Xenopus (Silurana)
tropicalis]
Length = 1338
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 181/293 (61%), Gaps = 16/293 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + +W + + +DVL S + + G + RP+I V QDN P L++
Sbjct: 1018 FDKNYKEWQTAVECFAVLDVLISLSQYSQGGDGPVCRPVI--------VLQDNHLPFLEL 1069
Query: 794 KGLWHP-FALGENGGLPVPNDILLG-----EDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
KG HP G +PNDIL+G D +L+TGPNMGGKSTLLR L
Sbjct: 1070 KGSRHPCITKTFFGDDFIPNDILIGCKEEDSDDSSDEAHCVLVTGPNMGGKSTLLRQAGL 1129
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
V++AQLGC+VP E C L+ D +FTRLGA+DRIM GESTF VE +ET+S+LQ AT+ SL
Sbjct: 1130 QVVMAQLGCYVPAESCRLTPVDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSL 1189
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGT+TFDG AIA AV ++L + + CR LF+THYH L ++++ V L HMAC
Sbjct: 1190 VLLDELGRGTATFDGTAIASAVVKELSQSVKCRTLFSTHYHSLVEDYSHSQAVRLGHMAC 1249
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ E+ S+ + + FLY+ GACP+SYG A +A +P ++++ A
Sbjct: 1250 MVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLAHIPDEIIQVGHQKA 1300
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 209/464 (45%), Gaps = 77/464 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF+WL + +D R++ +D YD TLY+P + L K + +++W +KSQ D ++F+K
Sbjct: 348 KFDWLQDGRRKDLKRKKQNDADYDPSTLYVPDDFLNKCTPGMRKWWQLKSQNFDTVIFYK 407
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 408 VGKFYELYHMDAVIGVNELGLTFM---KGAWAHSGFPEIAFGRFSDVLVQKGYKVARVEQ 464
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIGPDAVH---LLAIK 397
ET E + R + V+ R++ ++T T +DG P H LL K
Sbjct: 465 TETPEMMEVRCKSMSHPSKFDRVVRREICRIITKGTQTYSVLDGN--PSESHSKYLLCFK 522
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
E +YG +FVD + + VG DD C+ L+ P ++++E
Sbjct: 523 EKMDDSSGQRRIYGVSFVDTSVGKFHVGQFEDDRHCSRFRTLVAHFPPIQILFEKGNPSS 582
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQH 517
+ +K L+ + S L P + F DA + K + YF P S L V+++
Sbjct: 583 DTKKVLKSCLSTSIQESLQP---TSQFWDAFKTLKTLAEEAYFEKDFQPGSGNLPTVLKN 639
Query: 518 ----------------DIGFSALGGLISHLSRLMLDDVLRN----GDILP---------- 547
++ SALG I +L + ++D L + + +P
Sbjct: 640 LTSENDSLALTPGEKSELALSALGACIYYLKKCLIDQELLSMANFEEYIPVDTGIEKAQA 699
Query: 548 ----YKVYRDCLRMDGQTLY--------------------LDSCVTSSGKRLLRSWICHP 583
+ + +DG TL LD+C T GKRLL+ W+C P
Sbjct: 700 SSSFFAKTSQRMVLDGVTLTNLEILQNGTNGSTEGTLLEKLDTCSTPFGKRLLKQWLCAP 759
Query: 584 LKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L + IN+RL+ VE LM + V V+ L+KLPDLERLL ++
Sbjct: 760 LCNPFSINDRLNAVEDLMDLPDKVSEVSDLLKKLPDLERLLSKI 803
>gi|355704543|gb|AES02262.1| mutS-like protein 6 [Mustela putorius furo]
Length = 1278
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P+ P P L
Sbjct: 959 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEEGTP--------PFLD 1010
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++G HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1011 LRGSRHPCITKTFFGDDFIPNDILIGCEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1070
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ GC++P E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1071 VMAQTGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVL 1130
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1131 VDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1190
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P+++++ A +K
Sbjct: 1191 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEIIQKGHRKAREFEK 1244
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 211/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 289 LEWLKEDKRRDLQRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 348
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 349 GKFYELYHMDALIGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 405
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ V+T T + D + +LL++KE
Sbjct: 406 ETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKE 465
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P +V++E L E +
Sbjct: 466 EDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTETK 525
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DA++ +++ GYF +
Sbjct: 526 MILKGSLSSSLQEGLIPG---SQFWDAAKTLRMLLEEGYFKEKLNEDSGVLLPQVLKGMT 582
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPY 548
S S L + ++ SALGG + +L + ++D L + I P
Sbjct: 583 SESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSAIRPG 642
Query: 549 KVY---RDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
V+ + +D TL +DSC T GKRLL+ W+C PL
Sbjct: 643 AVFAKGNQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDSCHTPFGKRLLKQWLCAPLC 702
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V L+KLPDLERLL ++
Sbjct: 703 SPYAINDRLDAIEDLMAEPDKISDVVDLLKKLPDLERLLSKI 744
>gi|312135299|ref|YP_004002637.1| DNA mismatch repair protein muts [Caldicellulosiruptor owensensis OL]
gi|311775350|gb|ADQ04837.1| DNA mismatch repair protein MutS [Caldicellulosiruptor owensensis OL]
Length = 863
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 239/905 (26%), Positives = 400/905 (44%), Gaps = 195/905 (21%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA + KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQKVKDCILFFRLGDFYEMFFEDAIVASKELEIALTSRDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK ++ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSATSYIAKLIEKGYKVAICEQVEDPKLAKG-----IVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ + C + FVD + ++ I +D L LL ++
Sbjct: 116 ENLSTANNFI-------CCISKNRFEFALTFVDVSTGEMYSCLIEED-----LQKLLNEI 163
Query: 444 ---SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
+P E+ L ++ L ++ + T + + +F+D + ++++
Sbjct: 164 GKYNPSEI------LISRSEDELYEYLKKNC----TSFVQMIEFVDLQKCYEIIE----- 208
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLS---RLMLDDVLRNGDILPYKVYR--DCL 555
+ K E ++ ++G L+ +L+ ++ D + R ++ YR + L
Sbjct: 209 --NQINVGKIDERLIL------SVGNLLKYLTETQKISFDYIRR------FEFYRIQNYL 254
Query: 556 RMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
++D T LD TS G RLL+ WI PL DV IN RLD
Sbjct: 255 QIDINTKRNLELTESIIQRSKKNSLLGILDQTKTSMGSRLLKKWIERPLIDVIEINRRLD 314
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR-VQASSCI-------VLPLIGKKVL 647
VE L + +++ + + L ++ D+ERL + + V A + VLP + K +
Sbjct: 315 SVEQLKSSYSILVQIEELLSRMYDIERLSSKFAYKNVNAKDLLSLKRSIEVLPALKKLLS 374
Query: 648 KQQVKVFGSLVKGLRIAMDLLMLMH-----------KEGHIIP-----------SLSRIF 685
++ + +GL D+ L+ KEG II ++S+
Sbjct: 375 SFSAQLLKEIYEGLDTLEDIYALVDSSINEGAPVTLKEGGIIKDGFNEEVDRLRNISKNS 434
Query: 686 KPPIFDGSD-------------GLDKFLTQFEAAIDSDF---PD-------------YQN 716
K + + G +K + S++ PD Y
Sbjct: 435 KELLVQYEEKERNLTGIKNLRIGYNKVFGYYIEVTKSNYSLVPDRYIRKQTLANAERYVT 494
Query: 717 HDVTDLDAETLSI---LIELFIEKASQWSEVIHA-----------ISCIDVLRSFAVTAS 762
++ L+ E L LIEL + + + I A I+ +DVL SFA
Sbjct: 495 EELKKLEDEILGADQKLIELEYQLFCEIRDRIEAQIERIQKTASYIAILDVLCSFA---- 550
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSD 821
R I + P V G + IK HP G G +PND L D
Sbjct: 551 -------RIAIDNEYVRPNVYL---GDKIYIKNGRHPVVEKMIGRGNFIPNDTEL----D 596
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
R L++TGPNM GKST +R L VI+AQ+GCFVP + + + D IF+R+GA+D I
Sbjct: 597 QVENRILIITGPNMAGKSTYMRQVALIVIMAQMGCFVPADEAHIGIVDKIFSRIGASDDI 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINC 939
+G+STF+VE +E A++L+ AT SL+I DE+GRGTST+DG +IA+AV + + +I
Sbjct: 657 SSGQSTFMVEMSEVANILKNATPKSLIIFDEVGRGTSTYDGLSIAWAVLEYVADKSKIGA 716
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LFATHYH LT+ L+ K+ + + + ++FL ++ G C SYG
Sbjct: 717 KTLFATHYHELTE---------LEERIPGVKNYRVDVKEEGKNVIFLRKIVRGGCDSSYG 767
Query: 1000 LQVAVMAGVPQKVVEAASH-------------AALAMKKSIGESFKSSEQRSEFSSLHEE 1046
+ VA +AG+P+ V++ A + +++ I + F +EQ FS EE
Sbjct: 768 IHVARLAGIPEDVLKRAEEILKQLEEADINRKSIRKLRREIKKEF--TEQIDFFSYKKEE 825
Query: 1047 WLKTI 1051
+ I
Sbjct: 826 IIDKI 830
>gi|327262723|ref|XP_003216173.1| PREDICTED: DNA mismatch repair protein Msh6-like [Anolis
carolinensis]
Length = 1361
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 190/305 (62%), Gaps = 15/305 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + + W + I+ +DVL+ A + G + RP+IL + +N P L++
Sbjct: 1042 FDKNSRDWQAAVDCIAVLDVLQCLAHHSQGCDGPVCRPIIL-------LPDENTPPFLEL 1094
Query: 794 KGLWHPFALGENGGLP-VPNDILLG----EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ HP G +PNDI +G + + + +L+TGPNMGGKSTL+R L
Sbjct: 1095 ENSRHPCITKTFFGDDFIPNDIFIGVKDVKGNSEAKAPCILVTGPNMGGKSTLMRQAGLL 1154
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQLGCFVP E C L+ D +FTRLGA+DRIM+GESTF VE +ET+SVL+ AT+ S V
Sbjct: 1155 VIMAQLGCFVPAESCRLTPVDRVFTRLGASDRIMSGESTFFVELSETSSVLRHATEHSFV 1214
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR +F+THYH L +++ P V L HMAC
Sbjct: 1215 LMDELGRGTATFDGTAIANAVVKELSENIRCRAMFSTHYHSLVEDYTRCPSVQLGHMACM 1274
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
++ SE+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++ I
Sbjct: 1275 VENESEDPSQ--ETITFLYKFIKGACPKSYGFNAARLADIPEEVIQKGHKKAKEFER-IT 1331
Query: 1029 ESFKS 1033
S K+
Sbjct: 1332 HSLKA 1336
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 216/465 (46%), Gaps = 75/465 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DANRRR +DP YD T+++P + LK + +++W +KSQY D +LF+K
Sbjct: 372 KIEWLKDGKRKDANRRRQNDPDYDPSTIFVPEDYLKNCTPGMRKWWELKSQYFDCVLFYK 431
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA +G +L G G E D LV +GYKV RIEQ
Sbjct: 432 VGKFYELYHMDAVVGVSKLGLAFM---KGTWAHSGFPEIAYDRFSNTLVQKGYKVVRIEQ 488
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEG 399
+ET E +AR + V+ R++ +++ T + D + +LL IKE
Sbjct: 489 METPEMMEARCKSMAHPTKYDRVVHREVCRIISKGTQTYSILDGDFSDTHSKYLLCIKE- 547
Query: 400 NCGPDNG-SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
C G YG FVD + ++G DD C+ L LL P ++++E E
Sbjct: 548 KCDDSAGLHYTYGVCFVDTTVGKFYLGQFLDDRHCSRLRTLLAHYPPVQILFERGNPSGE 607
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK-ALENVMQ- 516
QK L+ S L +A + F AS+ K + YF +P S L V++
Sbjct: 608 TQKILKSLLPSSVQEGL---IAGSQFWKASKTLKTLIEEDYFQDKENPNSGVVLPPVIKS 664
Query: 517 ---------------HDIGFSALGGLISHLSRLMLD-DVLRNGDILPY------------ 548
++ SALG I +L + ++D D+L Y
Sbjct: 665 MTAESDSLGLTPGENSELALSALGCCIYYLKKCIIDKDILSMAKFEEYVPVDIDIGKEIK 724
Query: 549 --KVYRDC---LRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPL 584
++ + +DG TL +D+C T GKRLL+ W+C PL
Sbjct: 725 TSSIFAKTNQRMVLDGVTLANLEILENATGSPEGTLLERIDTCCTPFGKRLLKQWLCAPL 784
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ IN+RLD VE L+ + V + +L+KLPDLERLL ++ +
Sbjct: 785 CNPCAINDRLDAVENLLAEAARVSEIRDHLKKLPDLERLLSKIHS 829
>gi|194220748|ref|XP_001498011.2| PREDICTED: DNA mismatch repair protein Msh6-like [Equus caballus]
Length = 983
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 185/297 (62%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RPLIL P+ P P L
Sbjct: 662 FDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPLILLPEEDTP--------PFLY 713
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 714 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 773
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 774 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 833
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 834 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 893
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 894 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANIPEEVIQKGHRKAREFEK 948
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 28/225 (12%)
Query: 163 SCTEMNEDVSGPDTPGMH---RVVPRLKRILEDNLNIGDKKNSSLLDS--------SKRM 211
S E++ V D+ G+ +VVP+ KR++ N ++ K + + S S
Sbjct: 256 SSDEISSGVGDSDSEGLDSPVKVVPKRKRMVTGNGSLKKKTSRKEMPSATKRATSISSET 315
Query: 212 RLLQDSVAGVKNCEEEADTT--------------SKFEWLDPSKIRDANRRRPDDPLYDK 257
+ + + +N E +A + EWL K RD +RRR D P +D
Sbjct: 316 KSTLSAFSAPQNSESQAHVSGGCDDGSRPTIWYHETLEWLKEEKRRDLHRRRRDHPDFDA 375
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
TLY+P + L + +++W +KSQ D+++F+KVGKFYELY +DA IG EL +
Sbjct: 376 STLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIGVSELG---LV 432
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR 362
G G E + LV +GYKV R+EQ ET E +AR
Sbjct: 433 FMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEAR 477
>gi|367031666|ref|XP_003665116.1| hypothetical protein MYCTH_2308482 [Myceliophthora thermophila ATCC
42464]
gi|347012387|gb|AEO59871.1| hypothetical protein MYCTH_2308482 [Myceliophthora thermophila ATCC
42464]
Length = 1210
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 183/576 (31%), Positives = 279/576 (48%), Gaps = 69/576 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D N+ P P +D ++YIPP A + S +KQYW++K D ++FFK
Sbjct: 290 RYPWL--ANILDGNKNPPGHPDFDPTSIYIPPMAERGFSPFEKQYWDIKKNLWDTIVFFK 347
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 348 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQ 405
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ ++ A+ + VI R+L ++T T VDG++ D A + AIKE
Sbjct: 406 MESALGKEMRERESNAKKADKVIRRELSCILTAGTLVDGSMLQDDMATYCAAIKESVV-- 463
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
N +G AFVD A + ++ DD + Q SP+E++ E L A + L
Sbjct: 464 -NDKPAFGIAFVDAATGQFFLSEFEDDVDLTKFETFVAQTSPRELLLEKSRLSTRALRIL 522
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFN---GSSSPWSKALENVMQHDI 519
+ + + L P T+F DA ++ ++ GYF+ G W + L D+
Sbjct: 523 KNNTGPTTIWNYLKPG---TEFWDAELTRRELECGGYFSTEEGKEGVWPEKLNEAKDKDL 579
Query: 520 GFSALGGLISHLSRLMLDD-VLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SALGGL +L L LD +L G+ Y ++R+ L +DGQ+L
Sbjct: 580 AMSALGGLTHYLRLLKLDQSLLSQGNFTWYSPIHRNGTLILDGQSLINLEIFANTVNGGP 639
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRLLR W+CHPL +E IN RLD V+ L + ++ + + K
Sbjct: 640 EGTLFNLLNRCITPFGKRLLRQWVCHPLCSIEKINERLDAVDMLNADRSILQQFSSQMAK 699
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
+PDLERL+ R+ A V L G + + + + G+ G + L+ M
Sbjct: 700 MPDLERLISRIHAGACRPEDFVRVLEGFEQIDYVMGLLGAFGGGNGLVDKLIASM----- 754
Query: 677 IIPSLSRIFKPPI------FDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSIL 730
P+L K P+ FD D+ L E I+ DF + N D + L L
Sbjct: 755 --PNL----KEPLGYWETAFDRRKARDEKLLIPEKGIEEDFDNSLNE--LDRIRDELHAL 806
Query: 731 IE----LFIEKASQWSEVIHAISCIDVLRSFAVTAS 762
+E K ++++V I I+V ++ V AS
Sbjct: 807 LERQKTALKCKTLKFTDVGKEIYQIEVPKAVKVPAS 842
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 116/286 (40%), Positives = 157/286 (54%), Gaps = 22/286 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I I+ +D L S A ++S RP+ + D+ V++ K L HP
Sbjct: 896 WLQAIRIIAQLDCLISLAKSSSALGTPSCRPVFV----------DDDRSVIEFKELRHPC 945
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+ +PNDI LG D + LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 946 MVNTVADF-IPNDIKLGGDE----AKINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPA 1000
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1001 SSARLTPIDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1060
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EFA HP V + M + +
Sbjct: 1061 DGVAVAQAVLHHVASHIGCVGFFATHYHSLAAEFAHHPEVRARRMQI-------DVDEER 1113
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ + FLYRL G S+G+ A M G+P +V+E A AA A + +
Sbjct: 1114 KRVTFLYRLEDGVAEGSFGMHCAAMCGIPGRVIERAEVAARAWEHT 1159
>gi|440794306|gb|ELR15471.1| MutS domain V domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 1150
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/287 (44%), Positives = 174/287 (60%), Gaps = 21/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E +WS + ++ +D L S A+T+S + RP + + +
Sbjct: 794 FSENHREWSLAVACMAEVDCLHSLAITSSSLGEPVCRPTFVEAKE----------AFFEA 843
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ + HP + G +PN + +G + LLTGPNMGGKSTLLR TC+ I+AQ
Sbjct: 844 EEMRHPCISPKIGDEFIPNTLRVGHPHQPLI----LLTGPNMGGKSTLLRETCVLAIIAQ 899
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GCFVP C LS D IFTR+GA D IM G+STF++E ETAS+LQ AT SLVILDEL
Sbjct: 900 VGCFVPAASCRLSPVDRIFTRIGANDNIMAGQSTFMIELQETASILQHATPASLVILDEL 959
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGT+TFDGY+IAYAV L ++ CR LF+THYH LT E +PH+ L+HM+C +
Sbjct: 960 GRGTATFDGYSIAYAVLEHLSRKVGCRTLFSTHYHMLTDEVVRNPHIALKHMSCHIDDDR 1019
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+E+ FLY++ G CP+SYG+ VA MAGV +++V +A A
Sbjct: 1020 -------KEVTFLYKVADGVCPKSYGMNVARMAGVNEEIVASAEKIA 1059
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 142/444 (31%), Positives = 211/444 (47%), Gaps = 53/444 (11%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
W+ + +DA R DDP YD TL+IP + L+ M+ Q+QYW +K Q+ D ++F + G
Sbjct: 165 WIGEANQKDAQGRSRDDPAYDPSTLFIPRKDLEGMNTFQRQYWEIKKQHWDKIIFCRNGV 224
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL-- 353
F+ELYE DAEI H+ LD K+ G G+ E+ D KL+A GYKV ++EQ+
Sbjct: 225 FWELYEKDAEISHRLLDIKLADPGAMGMLTAGVFENAFDPYAAKLIALGYKVVKVEQMQA 284
Query: 354 -----ETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
E + K + + I ++ +++P T VD D A++LLA+KE P
Sbjct: 285 NTKSSEKKNRPKDQARTNFIQLQVTRILSPGTLVDDIYIDDERAIYLLAVKE-KWEPSGD 343
Query: 407 SVV--YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRG---LCKEAQK 461
S + YG FVD A V VG DD LL+Q+ P+E++YE G LC
Sbjct: 344 SELPSYGVCFVDTATGEVNVGQFQDDRDRTQFETLLLQIKPREILYEKEGPTALCSPQTL 403
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ----- 516
L K + LT F +AS + YF G W L +++
Sbjct: 404 QLIKRNVNQPT--LTRRRPGDQFWNASTTADFLAGADYFAGGDREWPPVLSQLLKDHREA 461
Query: 517 ---HDIGFSALGGLISHLSRLMLD-DVLRNGDILPY--------------------KVYR 552
++ SA GG++S+L L LD +VL G I Y +++
Sbjct: 462 REGSELCLSAFGGVVSYLKELYLDKEVLAQGRIKTYAGTTFDSPNLVLDSKTIKNLEIFE 521
Query: 553 DCL--RMDGQTLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM----KNSE 605
+ + + +G L L D C T GKRL + W+ PLK + I R + VE ++
Sbjct: 522 NTVDGKTEGTLLKLMDHCSTPFGKRLFKRWLAMPLKRIHEIEERQNAVEDFNGSEDHSTT 581
Query: 606 VVMVVAQYLRKLPDLERLLGRVKA 629
+ VA L+ LPDLER++ R+ A
Sbjct: 582 LKDAVALNLKGLPDLERIVSRIHA 605
>gi|325911928|ref|ZP_08174331.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 143-D]
gi|325476230|gb|EGC79393.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 143-D]
Length = 854
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 239/879 (27%), Positives = 394/879 (44%), Gaps = 176/879 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSSSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDKQIFLKK--AGITLSQPVKLSGEHAEVSYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L ++
Sbjct: 267 ----KSTKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFEDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ + L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS------------------------- 680
F + L+ DL++ L KEG II S
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDRYRDAMINGKKWLADMAN 442
Query: 681 --------------LSRIFKPPI-----FDGSDGLDKF-----LTQFEAAIDSDFPDYQN 716
+++F I + LD++ LT E I + +
Sbjct: 443 SEREKTGINNLRVGYNKVFGYYIEVTNSYKNKVPLDRYMRKQTLTNAERYITVELKE--- 499
Query: 717 HDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSGA 767
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNYV 559
Query: 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCL 824
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 560 C-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN--- 601
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++G
Sbjct: 602 --IFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISG 659
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
+STF+VE +E L+ AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LFA
Sbjct: 660 KSTFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFA 719
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 720 THYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVAQ 770
Query: 1005 MAGVPQKVVEAASHAALAMKK-SIGESFKSSEQRSEFSS 1042
+AG+P KV+ A+H ++K S ++ S EQ F S
Sbjct: 771 LAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLDLFGS 809
>gi|260815207|ref|XP_002602365.1| hypothetical protein BRAFLDRAFT_283756 [Branchiostoma floridae]
gi|229287674|gb|EEN58377.1| hypothetical protein BRAFLDRAFT_283756 [Branchiostoma floridae]
Length = 1278
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 184/301 (61%), Gaps = 14/301 (4%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVR 783
+T+ + F E +W + +S +DVL S + G M RP L+ P+
Sbjct: 973 DTMRTIFHSFDESYKEWDAAVQCVSVLDVLMSLMQYSLCGDGDMCRPELVTPEK------ 1026
Query: 784 QDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDC---LPRTLLLTGPNMGGKS 839
N P ++I+ HP +GG +PND ++G ++ +L+TGPNMGGKS
Sbjct: 1027 --NMQPFIEIREGRHPCICRTYSGGDFIPNDTVVGTSAESGGTDASSVVLVTGPNMGGKS 1084
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
TL+R + ++AQLGC+VP + C L+ D +FTRLGA+DRIM+GESTF VE +ET+S+L
Sbjct: 1085 TLMRQVGIITVIAQLGCYVPAQSCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSIL 1144
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
Q AT SLV+LDELGRGT+T+DG AIA +V ++L E + CR LF+THYH L +EF+ P+
Sbjct: 1145 QHATCHSLVLLDELGRGTATYDGTAIACSVVKELSENLRCRTLFSTHYHSLVEEFSHDPN 1204
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019
V L HMAC + N + + + FLY+ GACP+SYG A +A +P++V+ A
Sbjct: 1205 VRLGHMACMVE-NENDEDPSQETITFLYKFVKGACPKSYGFNAARLADLPEEVIRVAQDK 1263
Query: 1020 A 1020
A
Sbjct: 1264 A 1264
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 157/519 (30%), Positives = 236/519 (45%), Gaps = 89/519 (17%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEAL-KKMSASQKQYWNVKSQYMDVLLFFK 292
+E+L IRDA +R P D YD RTLY+P L K + +++W VKSQ D +LFFK
Sbjct: 306 YEFLQEGNIRDAKKRLPTDEDYDPRTLYVPDSFLMKNTTPLMRKWWEVKSQLYDTVLFFK 365
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA G EL C G E + LV +GY+V RIEQ
Sbjct: 366 VGKFYELYHMDAITGVNELGLIFMKGSQAHC---GFPEIAYGRYSDTLVQKGYRVARIEQ 422
Query: 353 LETSEQAKARHT--------NSVISRKLVNVVTPSTT----VDGTIGPDA-VHLLAIKE- 398
ET Q++ R+ + V+ R++ + T T ++G G A +LLAI E
Sbjct: 423 TETVPQSEERYRKLAKPTKFDKVVRREVCRITTKGTKTYSFLEGDTGEAANSYLLAIAEK 482
Query: 399 GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
N VYG FVD + + +G DD + L L+ Q +P +V++E L +
Sbjct: 483 ANEDIAGDQSVYGVCFVDTSIGKFHIGQFQDDRHSSRLRTLIAQYTPSQVLFERGKLSSK 542
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN---------GSSSPWSK 509
Q L + + L A++ ++F DA + K + YF+ S W +
Sbjct: 543 TQSILN----SNLSTALREALSSSEFWDAPKTLKFLAEKSYFSETGTEDEEETGDSCWPQ 598
Query: 510 ALENVMQ------------HDIGFSALGGLISHLSRLMLDDVLRN----GDILP------ 547
AL+ + +++G S+LG ++ +L R +D+ + + + P
Sbjct: 599 ALKKMTSDADSLGLTASDDYELGVSSLGAVVWYLKRCYIDEEMLSMCNFEEYTPVDSQAG 658
Query: 548 --------YKVYRDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSW 579
+ + + +DG TL LD C T GKRL + W
Sbjct: 659 VTEKSAPDFTTGKQHMVLDGVTLNNLEIIENSVTGSREGTLLDRLDMCCTPFGKRLFKQW 718
Query: 580 ICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVL 639
+C PL + IN+RLD VE LM +VV V + LRK+PDLERLL ++ A
Sbjct: 719 LCAPLCNPASINDRLDAVEDLMACRDVVAEVTEILRKVPDLERLLQKIHTLGLARRNKDH 778
Query: 640 PLIGKKVL-------KQQVKVFGSLVKGLRIAMDLLMLM 671
P G+ V K+++ F S + G R AM ++ +
Sbjct: 779 P-DGRAVFFEDVNYSKKKISDFLSALDGFRSAMRIVRMF 816
>gi|389749124|gb|EIM90301.1| DNA mismatch repair protein MSH3 [Stereum hirsutum FP-91666 SS1]
Length = 1098
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 240/895 (26%), Positives = 389/895 (43%), Gaps = 136/895 (15%)
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
+T+ I P K+ + + Q +K +Y VLL F+VG Y Y+ DA I KEL I
Sbjct: 190 KTVEIGPSG-KRYTPLELQVRQLKDKYEGVLLMFEVGYKYMFYDNDARIAAKELG--IVC 246
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAK-ARHTNSVISRKLVNVV 376
I D ++KL+++G+KVG I Q ET+ K + N+ +R+L ++
Sbjct: 247 FVKRNFETASIPTHRGDIHLKKLLSQGHKVGIIAQTETAALKKVGENRNAPFTRELAHLY 306
Query: 377 TPSTTVD--------GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN 428
T +T VD G P + ++ +G G D V+ G V V
Sbjct: 307 TATTFVDEMDSVDASGASAPLLMCVVEEPKGGMGVDE-KVIVGMIVVCPNTGDVTWDEFE 365
Query: 429 DDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF---SAGSAALELTPAMAVTDFL 485
D L ++ P E++ + L K ++ L F + G + + +
Sbjct: 366 DGHMRTELETRMVHTKPAELLLSGQKLSKPTERMLGYFVTHANGDHKIRMERYKDPMTYS 425
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS----------ALGGLISHLSRLM 535
DA E ++ ++ ++ SKA E+ ++ + AL I HL
Sbjct: 426 DAFEY-----VSAFYTRKTTS-SKASESFKSGELMAAVTDFPKQVVIALAQCIRHLEAFD 479
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSSGKRL 575
+ D L + + + ++G TL LD T G RL
Sbjct: 480 IADSLLATKFFSAFITTNHMLLNGNTLTNLEIYRNETDFTTRGSLMWILDRTTTKFGSRL 539
Query: 576 LRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV-VAQYLRKLPDLERLLGRVKARVQAS 634
LRSW+ PL + + R D VE ++ + + +V + LR LPDL + L +R+Q
Sbjct: 540 LRSWVGRPLVNKLALQERTDTVEEIVASPSMKLVQLRSALRGLPDLAKGL----SRIQYG 595
Query: 635 SC------IVLPLIGKKV----------------------------LKQQVKVFGSLVKG 660
C ++LP K L++ V+ S++
Sbjct: 596 KCTPKELSVLLPAFNKVAIIFPAMDNVSDVGFKSPILNDIIATLPRLREPVQELISMIVL 655
Query: 661 LRIAMDLLMLMHKEGHIIPSLS---------------------RIFKPPIFDGSDGL-DK 698
R A LM + P+L+ R+ K P S D+
Sbjct: 656 KRAAEGDKTLMWSDSEKYPALAEADMGIQAVEMDLADELKSIRRVLKKPALQWSSSRGDE 715
Query: 699 FLTQFEAAIDSDFP-DYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSF 757
+L + A S P + T S +++ +++ +Q+ E++ A + D +SF
Sbjct: 716 YLVEIPKAESSRVPATWHLISSTSRFRRYHSPVVKAKVQERAQFKEMLEA-AANDAFKSF 774
Query: 758 AVTASMSSGAMHR-------------PLILPQSKNPAVRQDNGGPV--LKIKGLWHPFAL 802
S + A+ R L L K V+ + V L+I HP
Sbjct: 775 LNEISQNHYALLRDAVNKLAIADCLMSLALVAMKGDYVKPEFTDEVDTLEIIDGRHPGGE 834
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
VPN + +G+ R+ ++TGPNMGGKS+ ++ L I+AQ+G +VP +
Sbjct: 835 ELKSEPFVPNSVTMGQGGQ----RSKIITGPNMGGKSSSVKMIALIAIMAQIGSYVPAKA 890
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
LS+ D+I TR+GA+D + G STF+VE +ET+ +L +AT SLVILDELGRGTSTFDG
Sbjct: 891 VKLSMMDSILTRMGASDELARGRSTFMVEMSETSDILSQATSKSLVILDELGRGTSTFDG 950
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
AIA A LV+ C+ LF THY + E +Q++ F+ E+ G +E
Sbjct: 951 MAIAQAAMHHLVQVKKCKTLFITHYPLVATELERRFPQEVQNLHMGFR--EESRINGIRE 1008
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQR 1037
+ FLYRLT G ES+G++ +AG+P++V++A++ A M++ + E + ++ R
Sbjct: 1009 ISFLYRLTEGLATESFGIECGRLAGIPEEVLQASAVQAAKMRRQVEERHRRNKTR 1063
>gi|449298624|gb|EMC94639.1| hypothetical protein BAUCODRAFT_111690 [Baudoinia compniacensis
UAMH 10762]
Length = 1206
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 239/481 (49%), Gaps = 48/481 (9%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
D + ++ WL + I DA+R PD P YD RTLYIPP A K S +KQYW +K ++ + +
Sbjct: 272 DPSERYTWL--AHILDADRHPPDHPDYDPRTLYIPPLAWNKFSPFEKQYWEIKQKFWNTI 329
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D + VA+GYK+
Sbjct: 330 VFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEASLDHWANQFVAKGYKIA 387
Query: 349 RIEQLETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKE 398
R++QLET+ + + VI R+L +V+T T VDG + D A + AIKE
Sbjct: 388 RVDQLETALGKDMRERDDGGKKKEEKVIRRELASVLTSGTLVDGGMLQDDMATYCAAIKE 447
Query: 399 GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+G +G AFVD A + + I DDA + Q P E+I E + +
Sbjct: 448 VE---RDGRPCFGIAFVDTATAQFHLADIVDDAEMTRFETFVAQTRPGELILEKSCISTK 504
Query: 459 AQKALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFN----GSSSPWSKALEN 513
A + L+ +A + L P +FL A + + + YF+ W AL
Sbjct: 505 ALRILKNNTAPTTIWNHLKPD---KEFLTAEKARMTIDGEAYFDKFVEDGIDTWPAALRQ 561
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
D+ FSA+G LI +LS L ++ D++ G+ Y R L +DGQ+L
Sbjct: 562 AKDKDLTFSAVGALIWYLSTLKIERDLVTCGNFAWYDPIRKASSLVLDGQSLINLEIFAN 621
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C+T GKR LR W+CHPL D I+ RLD V+ L +S V+
Sbjct: 622 TFDGSTEGTLFNMLNRCITPFGKRTLRQWVCHPLADPRRIDQRLDAVDALNADSTVMDRF 681
Query: 611 AQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
L +LPDLERL+ RV A V L G + ++ + + GS G + L+
Sbjct: 682 TASLSRLPDLERLISRVHAGRCRPQDFVKVLEGFEQIEYTMSLLGSFGSGEGMLGQLITS 741
Query: 671 M 671
M
Sbjct: 742 M 742
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 170/305 (55%), Gaps = 23/305 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + I+ +D L S A AS S GA P + V D+ VL
Sbjct: 879 FDEDYSIWLAAVKIIAQLDCLISLA-KASSSLGA-------PSCRPEFVDDDSARSVLDF 930
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
L HP E +PNDILLG D P LLTG N GKST+LR TC+AVILAQ
Sbjct: 931 TELRHPCI--ETTTNFIPNDILLGGDE----PSITLLTGANAAGKSTVLRMTCVAVILAQ 984
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPC ++ D I +RLGA D I G+STF+VE +ET +L +AT SLVILDEL
Sbjct: 985 IGCYVPCNSARMTPVDRIMSRLGAQDNIFAGQSTFMVELSETKKILSEATPRSLVILDEL 1044
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + + FATHYH L EFA HP + + MA + +
Sbjct: 1045 GRGTSSYDGVAVAQAVLHHVATHVGALGYFATHYHSLAAEFAPHPEIAPKRMAVRVEHDI 1104
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS--IGESF 1031
+++ FLY+L +G SYG+ A M G+P +V+ A AA A + + I ES
Sbjct: 1105 -------RDVTFLYKLENGIAEGSYGMHCAAMCGIPNRVISRAEEAAQAWEHTGRIAESV 1157
Query: 1032 KSSEQ 1036
+ +++
Sbjct: 1158 EKAKK 1162
>gi|73970143|ref|XP_531814.2| PREDICTED: DNA mismatch repair protein Msh6 [Canis lupus familiaris]
Length = 1283
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 186/297 (62%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + S G M RP+IL P+ P P L
Sbjct: 962 FDKNYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTP--------PFLD 1013
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
++G HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1014 LRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1073
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1074 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1133
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1134 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1193
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1194 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1248
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 292 LEWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLIIFYKV 351
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA G EL G G E + LV +GYKV R+EQ
Sbjct: 352 GKFYELYHMDALTGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 408
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ V+T T + D + +LL++KE
Sbjct: 409 ETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKE 468
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P +V++E L E +
Sbjct: 469 EDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTETK 528
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DA++ + + YF +
Sbjct: 529 MILKGSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEEYFKEKLNEDSGVMLPQVLKGMT 585
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL-----------RNGDIL----PY 548
S S L + ++ SALGG + +L + ++D L + D++ P
Sbjct: 586 SESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYVPLDSDVVSATRPG 645
Query: 549 KVYRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
V+ + +D TL +D+C T GKRLL+ W+C PL
Sbjct: 646 AVFAKANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLC 705
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + VA L+KLPDLERLL ++
Sbjct: 706 SPYAINDRLDAIEDLMVVPDKISDVADLLKKLPDLERLLSKI 747
>gi|346306310|ref|ZP_08848468.1| DNA mismatch repair protein mutS [Dorea formicigenerans 4_6_53AFAA]
gi|345900115|gb|EGX69943.1| DNA mismatch repair protein mutS [Dorea formicigenerans 4_6_53AFAA]
Length = 880
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 243/854 (28%), Positives = 382/854 (44%), Gaps = 157/854 (18%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ +++ +QY K +Y D +LF+++G FYE++ DA + KELD +T G +
Sbjct: 1 MAELTPMMQQYMKTKEEYKDCILFYRLGDFYEMFFDDALVASKELDITLTGKNCGLEERA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ +D + +LV++GYKV EQ+E AK ++ R++V + TP T +D
Sbjct: 61 PMCGVPFHAVDGYLNRLVSKGYKVAICEQMEDPATAKG-----IVKREVVRIATPGTNLD 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVV--------YGFAFVDCAALRVWVGTINDDASCAA 435
+ A+ E N ++ +G + D +V IN +
Sbjct: 116 ---------MQALDETK----NNYIMCVVYMEDRFGLSVADVTTGDYFVTEINTEEK--- 159
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF-LDASEVKKLV 494
L + ++ P E+I C EA F +G +L + +T + LD +
Sbjct: 160 LFDEIYKLMPSELI------CNEAF-----FMSGMNIEDLKNRLGITIYSLDPWYFDDAI 208
Query: 495 ---QLNGYFN-GSSSPWSKALENVMQHDIGFSALGGLI-----------SHLSRL----- 534
L +F GS + A +D G A G L+ SH+SRL
Sbjct: 209 CQDTLKEHFKVGSLTGLGLA-----DYDCGIIASGALLIYLKETQKTSLSHMSRLTPYAA 263
Query: 535 ---MLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGIN 591
ML D ++ + R+ + LD T+ G R LR +I PL I
Sbjct: 264 GKYMLLDSATRRNLELCETLREKQKRGSLLWVLDKTKTAMGARNLRKYIEQPLVQKYDIE 323
Query: 592 NRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIG 643
RLD + L+ N+ + +YL + DLERL+ ++ + SS +LP I
Sbjct: 324 KRLDALNELLDNAISREEIREYLSPIYDLERLVSKITYQSANPRDMIAFESSLSMLPHIK 383
Query: 644 KKVLKQQVKVFGSLVKGLRIAMDLLMLMH-----------KEGHII-----PSLSRIFKP 687
+ + + L + L DL L+ KEG II P + ++ +
Sbjct: 384 YILSEMTSPLLKELYEDLDTLEDLCTLIKDAIKEDPPLAMKEGGIIRDGYNPEVDKL-RS 442
Query: 688 PIFDGSDGLDK-----------------------FLTQFEAAIDSDFPDYQNHDVTDLDA 724
DG D L K + + + PDY T +A
Sbjct: 443 AKSDGKDWLAKLESDEREKTGIKNLKIKYNKVFGYYLEVTNSFKDLVPDYYTRKQTLANA 502
Query: 725 ETLSI--LIEL-----------FIEKASQWSEVIHAIS--CIDVLRSFAVTASMSSGAMH 769
E I L EL + + +S++ ++ + V ++ V A + + A
Sbjct: 503 ERYIIPELKELEDTILGAEDKLYSLEYELYSDIRSRVAKDVVRVQKTAKVIAQIDTLA-- 560
Query: 770 RPLILPQSKNPAVR-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS--DDCLPR 826
L L +N VR + N V+ IK HP +PND+ + D+ +D R
Sbjct: 561 -SLALVAEQNNYVRPKINEKGVIDIKEGRHPVVEK-----MIPNDMFISNDTYLNDKKDR 614
Query: 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGES 886
++TGPNM GKST +R T L V++AQ+G FVP + L D IFTR+GA+D + +G+S
Sbjct: 615 IAIITGPNMAGKSTYMRQTALIVLMAQIGSFVPAAKADIGLVDRIFTRVGASDDLASGQS 674
Query: 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFA 944
TF+VE TE A++L+ AT SL+ILDE+GRGTSTFDG +IA+AV + + + + LFA
Sbjct: 675 TFMVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVIEHISNSKLLGAKTLFA 734
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT+ +V + A K N GD +++FL ++ G +SYG+QVA
Sbjct: 735 THYHELTELEGKIDNV--NNYCIAVKEN------GD-DIIFLRKIVKGGADKSYGIQVAK 785
Query: 1005 MAGVPQKVVEAASH 1018
+AGVP+ V + A
Sbjct: 786 LAGVPESVTDRAKE 799
>gi|403332270|gb|EJY65139.1| MutS domain III family protein [Oxytricha trifallax]
Length = 1425
Score = 249 bits (637), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 199/332 (59%), Gaps = 42/332 (12%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E+F +K WS+++ ++ ID L S A+ + S G RP+ + N + P
Sbjct: 1073 IFEIFRQKRRIWSQIVSCLAEIDCLASMAIVSQSSDGLTCRPIFIKPEDNFS------KP 1126
Query: 790 VLKIKGLWHPFA---------LGENGGLP----------VPNDILLGE----------DS 820
L+++ + HP + G +PND ++G +
Sbjct: 1127 YLELRKMKHPCVNLTFNPVNEQQQTIGFSDEPVFKTSHFIPNDTIIGRLDQSQQHITSNY 1186
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
+D P LLLTGPNMGGKSTLLR TCLAVI+AQ+GC+VP E C+L+ D IFTRLGA+D+
Sbjct: 1187 EDNQPNILLLTGPNMGGKSTLLRQTCLAVIIAQIGCYVPAEKCILTPVDKIFTRLGASDK 1246
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940
++ +STF VE ET ++L KATQ+SL +LDELGRGTST+DG +IA AV + L ++I CR
Sbjct: 1247 LLEKKSTFYVEMEETKAILDKATQNSLAVLDELGRGTSTYDGLSIADAVLQYLADKIGCR 1306
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
LFATHYH L ++ HP +Q+ + + + +N Q++ +L++L C +S+G+
Sbjct: 1307 SLFATHYHQLCSKYEDHP--LIQNASMTYNLDIKN-----QKITYLFQLKKEKCGKSFGI 1359
Query: 1001 QVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
VA +AG+PQK+++ A ++ ++KS+ E +K
Sbjct: 1360 NVAQIAGLPQKIIKTAMTKSIELEKSLEEVYK 1391
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 135/478 (28%), Positives = 216/478 (45%), Gaps = 81/478 (16%)
Query: 216 DSVAGVKNCEEEADTTSKFE----WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMS 271
+S+ K EE T++F+ +L P KI D N+RRPDDP YD T++IP ++K S
Sbjct: 365 ESMRMRKQLMEEIKKTTEFKNLPWFLLPEKILDGNKRRPDDPKYDPSTIFIPQHEMQKFS 424
Query: 272 ASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG------KCRQ 325
+QYW +K + D +L F+ GKFYELY +DA IGH L KI SG + Q
Sbjct: 425 PFLQQYWEIKRTHFDKVLCFQKGKFYELYYIDALIGHYFL--KIQWSGGANPINYLQAIQ 482
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
VGI E ++ + ++L+ G+KV IEQ+E + R + + + N + T +
Sbjct: 483 VGIHEKNLNKSCQELIDIGFKVAVIEQVEDKHEVDKRMKINNNNNFMKNRMMMQKTHEQL 542
Query: 386 IGPDAVHLLAIKEGNCGP-DNGSVVY------------------------------GFAF 414
+ D L I P D SV Y AF
Sbjct: 543 VKRD---LSGIYTRGIAPYDPSSVDYETKWILALFVSTRSTPASFGQDPHIRIDKISVAF 599
Query: 415 VDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE 474
D L++ +G ++D + + LL Q+ P EVIY+ + + K L++
Sbjct: 600 FDNTTLQIHMGQFDEDQLYSKMRTLLCQIRPVEVIYDKESISLDVVKMLKEQPLAPDLNS 659
Query: 475 LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ----HDIGFSALGGLISH 530
++ + DF ++ LN Y + W K L+ Q ++ + A ++ +
Sbjct: 660 ISLRLNNVDFHKGIQIA----LNLY-GPDVNQWPKVLQQFRQSQHEYEPTWIAFAMMVMY 714
Query: 531 L-SRLMLDDVLRNGDIL---PYKVYRDCLRMDGQTL----------------------YL 564
L +RL+ D +L+ DI P + + +D Q + YL
Sbjct: 715 LQNRLVADQILKLTDIHLYDPINQLKTHMEIDAQAVRHLELLEVIGTEKPKVEGSLFHYL 774
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
D T GKRLL+ WI PL D++ IN+RLD +E ++ +++ + + L+ LPDLE+
Sbjct: 775 DYTKTVFGKRLLKKWISSPLYDIDKINSRLDSIEDFNRHPDLIFKLQEKLKMLPDLEK 832
>gi|331084834|ref|ZP_08333922.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410928|gb|EGG90350.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 885
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 257/930 (27%), Positives = 413/930 (44%), Gaps = 168/930 (18%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
++ +QY K QY D +LF+++G FYE++ DA KEL+ +T G +
Sbjct: 7 LTPMMQQYMETKKQYSDCILFYRLGDFYEMFFDDAITASKELEITLTGKNCGLEERAPMC 66
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT----- 381
G+ +D + +LV +GYKV EQ+E +QAK ++ R++V VVT T
Sbjct: 67 GVPYHSVDSYLNRLVEKGYKVAICEQVEDPQQAKG-----IVKREVVRVVTAGTNMNAQA 121
Query: 382 VDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+D T + ++ I + YG A D + +V ++ S L +
Sbjct: 122 LDETKNNYIMCIVYIADR----------YGLAVADVSTGDYFVTELD---SGRKLLDEIH 168
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAV------TDFLDASEVKKLVQ 495
+ SP E+I C E+ + +G +L + + T F D ++
Sbjct: 169 KFSPSEII------CNESF-----YMSGLDLDDLRHRLGMMIYSIDTHFFDDEMCARI-- 215
Query: 496 LNGYFNGSSSPWSKALEN--VMQHDIGFSALGGLISHL-------------------SRL 534
L +F+ +S LE + ++ G A G L+ +L R
Sbjct: 216 LKEHFHAAS------LEGMGLGDYNCGVIAAGALLKYLYETQKTSLSHITHITGYATGRY 269
Query: 535 MLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
ML D ++ + R+ + LD T+ G R+LRS+I PL D I RL
Sbjct: 270 MLLDSSSRRNLELCETLREKQKRGSLLWVLDKTKTAMGARMLRSYIEQPLIDRHEIEQRL 329
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKV 646
+ VE L + + +YL + DLERL+ RV + +S +LP I +
Sbjct: 330 EAVEELKDKAISREEIREYLSPVYDLERLISRVTYQSANPRDLISFRNSLEMLPHIKYIL 389
Query: 647 LKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDG-LD-------- 697
+ ++ + + L DL L+++ P L+ I DG D +D
Sbjct: 390 TEMHEELLQQICEELDTLEDLYQLLNESIMEEPPLAMKEGGIIKDGYDADVDMLRQAKTE 449
Query: 698 --KFLTQFEA---------------------------AIDSDFPDYQNHDVTDLDAETL- 727
+L Q E A PDY T +AE
Sbjct: 450 GKNWLAQLEEEEREKTGIRNLKVKYNKVFGYYLEVTNAYKELVPDYYTRKQTLANAERFI 509
Query: 728 ---------SIL---IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
+IL +L+ + + + +V I+ +VLR +++ + L L
Sbjct: 510 TPRLKELEDTILGAEDKLYALEYTLYCKVRDRIAS-EVLRVQKTAKAVAKIDVFTSLALV 568
Query: 776 QSKNPAVR-QDNGGPVLKIKGLWHPFALGEN-GGLPVPNDILLGEDSDDCLPRTLLLTGP 833
+N VR + N ++ IKG HP + + ND LL DD R ++TGP
Sbjct: 569 AERNNYVRPKINEKGLIDIKGGRHPVVEKMTPDNMFIANDTLL----DDKKNRVSIITGP 624
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NM GKST +R + L V++AQ+G FVP + + + D IFTR+GA+D + +G+STF+VE T
Sbjct: 625 NMAGKSTYMRQSALIVLMAQIGSFVPADSANIGICDRIFTRVGASDDLASGQSTFMVEMT 684
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLT 951
E A++L+ AT SL+ILDE+GRGTSTFDG +IA+AV + + + + LFATHYH LT
Sbjct: 685 EVANILRNATSSSLLILDEIGRGTSTFDGLSIAWAVVEHISNKKLLGAKTLFATHYHELT 744
Query: 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
+ V + A K +GD ++VFL ++ G +SYG+QVA +AGVP+
Sbjct: 745 ELEGKLDSV--NNYCIAVK------EQGD-DIVFLRKIVKGGADKSYGIQVAKLAGVPES 795
Query: 1012 VVEAASH--AALAMKKSIGESFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDD---- 1064
V+ A L+ + + S Q SE + +++ + + +S D DDD
Sbjct: 796 VIARAKEIVGELSEADITTKVREISAQGSETKARQKKYDEVDLAQISLFDTVKDDDVLEE 855
Query: 1065 ------------DAYDTLFCLWHELKNSYQ 1082
DA +T++ L ++LKN ++
Sbjct: 856 LKEIDVSNLTPMDALNTIYRLQNKLKNRWK 885
>gi|325661608|ref|ZP_08150232.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472135|gb|EGC75349.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
4_1_37FAA]
Length = 876
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 257/925 (27%), Positives = 411/925 (44%), Gaps = 168/925 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY K QY D +LF+++G FYE++ DA KEL+ +T G + G+
Sbjct: 3 QQYMETKKQYSDCILFYRLGDFYEMFFDDAITASKELEITLTGKNCGLEERAPMCGVPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT-----VDGTI 386
+D + +LV +GYKV EQ+E +QAK ++ R++V VVT T +D T
Sbjct: 63 SVDSYLNRLVEKGYKVAICEQVEDPQQAKG-----IVKREVVRVVTAGTNMNAQALDETK 117
Query: 387 GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
+ ++ I + YG A D + +V ++ S L + + SP
Sbjct: 118 NNYIMCIVYIADR----------YGLAVADVSTGDYFVTELD---SGRKLLDEIHKFSPS 164
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAV------TDFLDASEVKKLVQLNGYF 500
E+I C E+ + +G +L + + T F D ++ L +F
Sbjct: 165 EII------CNESF-----YMSGLDLDDLRHRLGMMIYSIDTHFFDDEMCARI--LKEHF 211
Query: 501 NGSSSPWSKALEN--VMQHDIGFSALGGLISHL-------------------SRLMLDDV 539
+ +S LE + ++ G A G L+ +L R ML D
Sbjct: 212 HAAS------LEGMGLGDYNCGVIAAGALLKYLYETQKTSLSHITHITGYATGRYMLLDS 265
Query: 540 LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
++ + R+ + LD T+ G R+LRS+I PL D I RL+ VE
Sbjct: 266 SSRRNLELCETLREKQKRGSLLWVLDKTKTAMGARMLRSYIEQPLIDRHEIEQRLEAVEE 325
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQV 651
L + + +YL + DLERL+ RV + +S +LP I + +
Sbjct: 326 LKDKAISREEIREYLSPVYDLERLISRVTYQSANPRDLISFRNSLEMLPHIKYILTEMHE 385
Query: 652 KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDG-LD----------KFL 700
++ + + L DL L+++ P L+ I DG D +D +L
Sbjct: 386 ELLQQICEELDTLEDLYQLLNESIMEEPPLAMKEGGIIKDGYDADVDMLRQAKTEGKNWL 445
Query: 701 TQFEA---------------------------AIDSDFPDYQNHDVTDLDAETL------ 727
Q E A PDY T +AE
Sbjct: 446 AQLEEEEREKTGIRNLKVKYNKVFGYYLEVTNAYKELVPDYYTRKQTLANAERFITPRLK 505
Query: 728 ----SIL---IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
+IL +L+ + + + +V I+ +VLR +++ + L L +N
Sbjct: 506 ELEDTILGAEDKLYALEYTLYCKVRDRIAS-EVLRVQKTAKAVAKIDVFTSLALVAERNN 564
Query: 781 AVR-QDNGGPVLKIKGLWHPFALGEN-GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
VR + N ++ IKG HP + + ND LL DD R ++TGPNM GK
Sbjct: 565 YVRPKINEKGLIDIKGGRHPVVEKMTPDNMFIANDTLL----DDKKNRVSIITGPNMAGK 620
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R + L V++AQ+G FVP + + + D IFTR+GA+D + +G+STF+VE TE A++
Sbjct: 621 STYMRQSALIVLMAQIGSFVPADSANIGICDRIFTRVGASDDLASGQSTFMVEMTEVANI 680
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFAS 956
L+ AT SL+ILDE+GRGTSTFDG +IA+AV + + + + LFATHYH LT+
Sbjct: 681 LRNATSSSLLILDEIGRGTSTFDGLSIAWAVVEHISNKKLLGAKTLFATHYHELTELEGK 740
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
V + A K +GD ++VFL ++ G +SYG+QVA +AGVP+ V+ A
Sbjct: 741 LDSVN--NYCIAVK------EQGD-DIVFLRKIVKGGADKSYGIQVAKLAGVPESVIARA 791
Query: 1017 SH--AALAMKKSIGESFKSSEQRSEFSSLHEEWLKT-IVNVSRVDCNSDDD--------- 1064
L+ + + S Q SE + +++ + + +S D DDD
Sbjct: 792 KEIVGELSEADITTKVREISAQGSETKARQKKYDEVDLAQISLFDTVKDDDVLEELKEID 851
Query: 1065 -------DAYDTLFCLWHELKNSYQ 1082
DA +T++ L ++LKN ++
Sbjct: 852 VSNLTPMDALNTIYRLQNKLKNRWK 876
>gi|166031820|ref|ZP_02234649.1| hypothetical protein DORFOR_01521 [Dorea formicigenerans ATCC 27755]
gi|166028273|gb|EDR47030.1| DNA mismatch repair protein MutS [Dorea formicigenerans ATCC 27755]
Length = 874
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 243/846 (28%), Positives = 378/846 (44%), Gaps = 157/846 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY K +Y D +LF+++G FYE++ DA + KELD +T G + G+
Sbjct: 3 QQYMKTKEEYKDCILFYRLGDFYEMFFDDALVASKELDITLTGKNCGLEERAPMCGVPFH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D + +LV++GYKV EQ+E AK ++ R++V + TP T +D
Sbjct: 63 AVDGYLNRLVSKGYKVAICEQMEDPATAKG-----IVKREVVRIATPGTNLD-------- 109
Query: 392 HLLAIKEGNCGPDNGSVV--------YGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ A+ E N ++ +G + D +V IN + L + ++
Sbjct: 110 -MQALDETK----NNYIMCVVYMEDRFGLSVADVTTGDYFVTEINTEEK---LFDEIYKL 161
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF-LDASEVKKLV---QLNGY 499
P E+I C EA F +G +L + +T + LD + L +
Sbjct: 162 MPSELI------CNEAF-----FMSGMNIEDLKNRLGITIYSLDPWYFDDAICQDTLKEH 210
Query: 500 FN-GSSSPWSKALENVMQHDIGFSALGGLI-----------SHLSRL--------MLDDV 539
F GS + A +D G A G L+ SH+SRL ML D
Sbjct: 211 FKVGSLTGLGLA-----DYDCGIIASGALLIYLKETQKTSLSHMSRLIPYAAGKYMLLDS 265
Query: 540 LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
++ + R+ + LD T+ G R LR +I PL I RLD +
Sbjct: 266 ATRRNLELCETLREKQKRGSLLWVLDKTKTAMGARNLRKYIEQPLVQKYDIEKRLDALNE 325
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQV 651
L+ N+ + +YL + DLERL+ ++ + SS +LP I + +
Sbjct: 326 LLDNAISREEIREYLSPIYDLERLVSKITYQSANPRDMIAFESSLSMLPHIKYILSEMTS 385
Query: 652 KVFGSLVKGLRIAMDLLMLMH-----------KEGHII-----PSLSRIFKPPIFDGSDG 695
+ L + L DL L+ KEG II P + ++ + DG D
Sbjct: 386 PLLKELYEDLDTLEDLCTLIKDAIQEDPPLAMKEGGIIRDGYNPEVDKL-RSAKSDGKDW 444
Query: 696 LDK-----------------------FLTQFEAAIDSDFPDYQNHDVTDLDAETLSI--L 730
L K + + + PDY T +AE I L
Sbjct: 445 LAKLESDEREKTGIKNLKIKYNKVFGYYLEVTNSFKDLVPDYYTRKQTLANAERYIIPEL 504
Query: 731 IEL-----------FIEKASQWSEVIHAIS--CIDVLRSFAVTASMSSGAMHRPLILPQS 777
EL + + +S++ ++ + V ++ V A + + A L L
Sbjct: 505 KELEDTILGAEDKLYSLEYELYSDIRSRVAKDVVRVQKTAKVIAQIDTLA---SLALVAE 561
Query: 778 KNPAVR-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS--DDCLPRTLLLTGPN 834
+N VR + N V+ IK HP +PND+ + D+ +D R ++TGPN
Sbjct: 562 QNNYVRPKINEKGVIDIKDGRHPVVEK-----MIPNDMFISNDTYLNDKKDRIAIITGPN 616
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
M GKST +R T L V++AQ+G FVP + L D IFTR+GA+D + +G+STF+VE TE
Sbjct: 617 MAGKSTYMRQTALIVLMAQIGSFVPASKADIGLVDRIFTRVGASDDLASGQSTFMVEMTE 676
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTK 952
A++L+ AT SL+ILDE+GRGTSTFDG +IA+AV + + + + LFATHYH LT+
Sbjct: 677 VANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVIEHISNSKLLGAKTLFATHYHELTE 736
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
+V + A K N GD +++FL ++ G +SYG+QVA +AGVP+ V
Sbjct: 737 LEGKIDNV--NNYCIAVKEN------GD-DIIFLRKIVKGGADKSYGIQVAKLAGVPESV 787
Query: 1013 VEAASH 1018
+ A
Sbjct: 788 TDRAKE 793
>gi|312870746|ref|ZP_07730853.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 3008A-a]
gi|329919600|ref|ZP_08276589.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 1401G]
gi|311093758|gb|EFQ52095.1| DNA mismatch repair protein MutS [Lactobacillus iners LEAF 3008A-a]
gi|328937405|gb|EGG33827.1| DNA mismatch repair protein MutS [Lactobacillus iners SPIN 1401G]
Length = 854
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 240/880 (27%), Positives = 394/880 (44%), Gaps = 178/880 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSNSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDKQIFLKK--AGITLSQPVKLSKEHAEISYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ + L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS-----LSRIFKPPIFDGSDG----- 695
F + L+ DL++ L KEG II S L R ++ + +G
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDR-YRDAMMNGKKWLADMA 441
Query: 696 -----------------------------------LDKF-----LTQFEAAIDSDFPDYQ 715
LD++ LT E I + +
Sbjct: 442 NSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRYMRKQTLTNAERYITVELKE-- 499
Query: 716 NHDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSG 766
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 -HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNY 558
Query: 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDC 823
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 559 VC-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN-- 601
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++
Sbjct: 602 ---IFLITGPNMSGKSTYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLIS 658
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G+STF+VE +E L+ AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LF
Sbjct: 659 GKSTFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLF 718
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
ATHYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 719 ATHYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVA 769
Query: 1004 VMAGVPQKVVEAASHAALAMKK-SIGESFKSSEQRSEFSS 1042
+AG+P KV+ A+H ++K S ++ S EQ F S
Sbjct: 770 QLAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLDLFGS 809
>gi|315653064|ref|ZP_07905992.1| DNA mismatch repair protein HexA [Lactobacillus iners ATCC 55195]
gi|315489599|gb|EFU79233.1| DNA mismatch repair protein HexA [Lactobacillus iners ATCC 55195]
Length = 854
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 240/880 (27%), Positives = 393/880 (44%), Gaps = 178/880 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSNSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDKQIFLKK--AGITLSQPVKLSKEHAEVSYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ + L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS-----LSRIFKPPIFDGSDG----- 695
F + L+ DL++ L KEG II S L R ++ + +G
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDR-YRDAMMNGKKWLADMA 441
Query: 696 -----------------------------------LDKF-----LTQFEAAIDSDFPDYQ 715
LD++ LT E I + +
Sbjct: 442 NSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRYMRKQTLTNAERYITVELKE-- 499
Query: 716 NHDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSG 766
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 -HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNY 558
Query: 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDC 823
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 559 VC-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN-- 601
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++
Sbjct: 602 ---IFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLIS 658
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G+STF+VE +E L AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LF
Sbjct: 659 GKSTFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLF 718
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
ATHYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 719 ATHYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVA 769
Query: 1004 VMAGVPQKVVEAASHAALAMKK-SIGESFKSSEQRSEFSS 1042
+AG+P KV+ A+H ++K S ++ S EQ F S
Sbjct: 770 QLAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLDLFGS 809
>gi|410667733|ref|YP_006920104.1| DNA mismatch repair protein MutS [Thermacetogenium phaeum DSM 12270]
gi|409105480|gb|AFV11605.1| DNA mismatch repair protein MutS [Thermacetogenium phaeum DSM 12270]
Length = 881
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 238/879 (27%), Positives = 392/879 (44%), Gaps = 185/879 (21%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY ++K++Y D LLFF++G FYEL+ DA KEL+ +T GV K ++V G+
Sbjct: 10 QYQSIKNKYPDCLLFFRLGDFYELFGEDAIKASKELEIVLTSRGVSKDKKVPMCGVPYHA 69
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+D +++L+ +GYK+ EQLE ++ K ++ R +V V+TP T ++
Sbjct: 70 VDGYLKRLLEKGYKIAICEQLEEAKPGKG-----IVKRDVVRVITPGTVLEPAY------ 118
Query: 393 LLAIKEGNCGPDNGSVV--------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
+++G +N ++ G A+ D + + + ++ A+ L LL ++
Sbjct: 119 ---LEQG----ENNYIISLYRKKESIGCAWSDISTGKFQMTQFSETAAAEYLRDLLSRLQ 171
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504
P E I + Q A P M D+ ++ + + +LN NG
Sbjct: 172 PAECI------IRSDQAAF-----------FEPLME--DYWESKGLN-ITRLNKEINGQV 211
Query: 505 SPWSKALENVMQHDI----------GFSALGGLISHLSRL-------------------M 535
+ W Q ++ G + L+S++ M
Sbjct: 212 A-WELVTRQFGQENLIGIDRDAFETGLVSAANLLSYIMETQKTSTLPFKDLSVYTPKSCM 270
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
D + ++ ++ RD R LD +T G RLLR W+ PL D+E I R +
Sbjct: 271 YIDAMTRRNMELFRTLRDGKREGSLFWALDRTLTGMGTRLLRYWLESPLLDIEEIEARQE 330
Query: 596 VVE-----YLMKN----------------SEV---------VMVVAQYLRKLPDLERLLG 625
VE + ++N S V ++ +A+ L+ +PDL+ +LG
Sbjct: 331 AVEELAGSFFLRNELQECLKKIYDLERIISRVDWQLAGPRDLLGLAKSLQVIPDLKEILG 390
Query: 626 RVKARVQASSCIVLPLIG--KKVL--------KQQVKVFGSLVKGLRIAMDLLMLMHKEG 675
+ K+++ + + L + K++L +K G + G +D L M EG
Sbjct: 391 QAKSKMLREAGVELDPVADIKEMLFSALIDDPPANLKNGGIIRTGYHPEVDKLRNMIAEG 450
Query: 676 HI--------------IPSL----SRIF-------KPPI--FDGSDGLDKFLTQFEAAID 708
I SL +++F KP + G + LTQ E I
Sbjct: 451 EDWIRKLEARERVRTGIKSLKIDYNKVFGYYIEVTKPNLHLVPGDYIRKQTLTQAERFIT 510
Query: 709 SDFPDYQ------NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTAS 762
++ + + + DL+ + + E + + I+ ID L SFA TA+
Sbjct: 511 TELKEQEALFLGATERLQDLEYQIFLDIRRQVGEASEKIRRNAGIIARIDCLVSFAETAA 570
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDS 820
+P I N V++IK HP L G VPND+ +GED+
Sbjct: 571 RYH--YTKPKI------------NNSGVIRIKNGRHPVLEQLLPEGSF-VPNDLEIGEDA 615
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
D R L+LTGPNM GKST +R L V++AQ G VP + + + D +F R GA D
Sbjct: 616 D----RILILTGPNMAGKSTYMRQMALIVLMAQCGSLVPADEAEIGIVDRVFVRAGAFDD 671
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940
+ G+STF++E E + ++ AT+ S ++LDE+GRGT TFDG IA+A+ + ++I R
Sbjct: 672 LGKGQSTFMMEMNEVSYIVHHATERSFIVLDEIGRGTGTFDGIGIAWAIIEYIHDKIGAR 731
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
+FATHYH LT + A H C+ E Q +VFL+++ G +SYG+
Sbjct: 732 TIFATHYHQLT-QLADILHGVAN---CSVAVQEEG-----QNIVFLHKVVPGGTDKSYGI 782
Query: 1001 QVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSE 1039
QVA +A +P+++V+ A A +M+ G S S +R+E
Sbjct: 783 QVARLAHLPEELVQRAQEVAASME---GGSGNKSGKRTE 818
>gi|344245100|gb|EGW01204.1| DNA mismatch repair protein Msh6 [Cricetulus griseus]
Length = 1260
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 184/296 (62%), Gaps = 13/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W I I+ +DVL A + G M RP+IL + ++ P L++
Sbjct: 939 FAKNYKDWQSAIECIAVLDVLLCLANYSQGGDGPMCRPVIL-------LPGEDTHPFLEL 991
Query: 794 KGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRT---LLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G + + +L+TGPNMGGKSTL+R L
Sbjct: 992 KGSRHPCVTKTFFGDDFIPNDILIGCEEEGEENGKAYCVLVTGPNMGGKSTLIRQAGLLA 1051
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQLGC+VP E C L+L D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1052 VMAQLGCYVPAEECRLTLVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVL 1111
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1112 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVSVRLGHMACMV 1171
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V+ A +K
Sbjct: 1172 ENECEDPSQ--ETITFLYKFIQGACPKSYGFNAARLANLPEEVIRKGHRKAREFEK 1225
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/461 (29%), Positives = 212/461 (45%), Gaps = 73/461 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
+WL P K RD +RRRPD P ++ TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 270 LDWLKPEKRRDEHRRRPDHPDFNSSTLYVPEDFLNSCTPGMRKWWEIKSQNFDLVIFYKV 329
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 330 GKFYELYHMDAVIGVNELGLVFM---KGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 386
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T G + D + +LL++KE
Sbjct: 387 ETPEMMEARCRKMAHVSKFDRVVRREVCRIITKGTQTYGVLEGDPSESNSRYLLSLKEKE 446
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G DD C+ L+ P ++++E L E +
Sbjct: 447 EDSSGHTRVYGVCFVDTSLGKFFIGQFPDDRHCSRFRTLVAHYPPVQILFEKGNLSTETK 506
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM----- 515
L+ + L P + F DA++ + + GYF+G S L V+
Sbjct: 507 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEEGYFSGKSEGSGVVLPGVLKSMTS 563
Query: 516 -----------QHDIGFSALGGLISHLSRLMLDDVL--------------------RNGD 544
+ ++ SALGG + +L + ++D L R G
Sbjct: 564 ESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDKVTTVRPGA 623
Query: 545 ILPYKVYR---DCLRMDGQTLY---------------LDSCVTSSGKRLLRSWICHPLKD 586
I R D + ++ ++ LD+C T GKRLL+ W+C PL
Sbjct: 624 IFTTASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCS 683
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD V LM + V V L+KLPDLERLL ++
Sbjct: 684 PSAISDRLDAVGDLMALPDKVNEVTDLLKKLPDLERLLSKI 724
>gi|349612127|ref|ZP_08891354.1| DNA mismatch repair protein mutS [Lactobacillus sp. 7_1_47FAA]
gi|348609143|gb|EGY59104.1| DNA mismatch repair protein mutS [Lactobacillus sp. 7_1_47FAA]
Length = 854
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 240/880 (27%), Positives = 394/880 (44%), Gaps = 178/880 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSNSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDKQIFLKK--AGITLSQPVKLSKEHAEISYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ + L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS-----LSRIFKPPIFDGSDG----- 695
F + L+ DL++ L KEG II S L R ++ + +G
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDR-YRDAMMNGKKWLADMA 441
Query: 696 -----------------------------------LDKF-----LTQFEAAIDSDFPDYQ 715
LD++ LT E I + +
Sbjct: 442 NSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRYMRKQTLTNAERYITVELKE-- 499
Query: 716 NHDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSG 766
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 -HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNY 558
Query: 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDC 823
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 559 VC-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN-- 601
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++
Sbjct: 602 ---IFLITGPNMSGKSTYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLIS 658
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G+STF+VE +E L+ AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LF
Sbjct: 659 GKSTFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLF 718
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
ATHYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 719 ATHYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVA 769
Query: 1004 VMAGVPQKVVEAASHAALAMKK-SIGESFKSSEQRSEFSS 1042
+AG+P KV+ A+H ++K S ++ S EQ F S
Sbjct: 770 QLAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLDLFGS 809
>gi|296223907|ref|XP_002807586.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein
Msh6-like, partial [Callithrix jacchus]
Length = 1223
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 903 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 954
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 955 KGSRHPCVTKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1014
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1015 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILSHATAHSLVL 1074
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1075 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1134
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1135 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1188
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 210/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 233 LEWLKDEKRRDEHRRRPDHPDFDGSTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 292
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 293 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 349
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D +LL++KE
Sbjct: 350 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYNKYLLSLKEKE 409
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 410 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 469
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS----------------- 503
L+ + S L P + F DAS+ + + GYF
Sbjct: 470 TILKSSLSSSLQEGLIPG---SQFWDASKTLRTLLEEGYFREKLSDDIGVMLPQVLKGMI 526
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 527 SESDSIGLTPREKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDIVSTTRSG 586
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
+ R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 587 AVFTKAYQRMVLDAVTLNNLEIFLNGTNGSAEGTLLERVDTCHTPFGKRLLKQWLCAPLC 646
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM E + V + L+KLPDLERLL ++
Sbjct: 647 SPYAINDRLDAIEDLMVVPEKISEVVELLKKLPDLERLLSKI 688
>gi|354474750|ref|XP_003499593.1| PREDICTED: DNA mismatch repair protein Msh6 [Cricetulus griseus]
Length = 1297
Score = 249 bits (635), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 132/296 (44%), Positives = 184/296 (62%), Gaps = 13/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W I I+ +DVL A + G M RP+IL + ++ P L++
Sbjct: 976 FAKNYKDWQSAIECIAVLDVLLCLANYSQGGDGPMCRPVIL-------LPGEDTHPFLEL 1028
Query: 794 KGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRT---LLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G + + +L+TGPNMGGKSTL+R L
Sbjct: 1029 KGSRHPCVTKTFFGDDFIPNDILIGCEEEGEENGKAYCVLVTGPNMGGKSTLIRQAGLLA 1088
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQLGC+VP E C L+L D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1089 VMAQLGCYVPAEECRLTLVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVL 1148
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1149 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVSVRLGHMACMV 1208
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V+ A +K
Sbjct: 1209 ENECEDPSQ--ETITFLYKFIQGACPKSYGFNAARLANLPEEVIRKGHRKAREFEK 1262
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/461 (29%), Positives = 212/461 (45%), Gaps = 73/461 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
+WL P K RD +RRRPD P ++ TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 307 LDWLKPEKRRDEHRRRPDHPDFNSSTLYVPEDFLNSCTPGMRKWWEIKSQNFDLVIFYKV 366
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 367 GKFYELYHMDAVIGVNELGLVFM---KGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 423
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T G + D + +LL++KE
Sbjct: 424 ETPEMMEARCRKMAHVSKFDRVVRREVCRIITKGTQTYGVLEGDPSESNSRYLLSLKEKE 483
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G DD C+ L+ P ++++E L E +
Sbjct: 484 EDSSGHTRVYGVCFVDTSLGKFFIGQFPDDRHCSRFRTLVAHYPPVQILFEKGNLSTETK 543
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM----- 515
L+ + L P + F DA++ + + GYF+G S L V+
Sbjct: 544 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEEGYFSGKSEGSGVVLPGVLKSMTS 600
Query: 516 -----------QHDIGFSALGGLISHLSRLMLDDVL--------------------RNGD 544
+ ++ SALGG + +L + ++D L R G
Sbjct: 601 ESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDKVTTVRPGA 660
Query: 545 ILPYKVYR---DCLRMDGQTLY---------------LDSCVTSSGKRLLRSWICHPLKD 586
I R D + ++ ++ LD+C T GKRLL+ W+C PL
Sbjct: 661 IFTTASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCS 720
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD V LM + V V L+KLPDLERLL ++
Sbjct: 721 PSAISDRLDAVGDLMALPDKVNEVTDLLKKLPDLERLLSKI 761
>gi|196016559|ref|XP_002118131.1| hypothetical protein TRIADDRAFT_33687 [Trichoplax adhaerens]
gi|190579257|gb|EDV19356.1| hypothetical protein TRIADDRAFT_33687 [Trichoplax adhaerens]
Length = 984
Score = 249 bits (635), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 183/297 (61%), Gaps = 12/297 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W+ I ++ +D L S A +S RP + A +N P ++I
Sbjct: 688 FDEYYENWNVAIQCVAVLDALCSLASYSSSIESESCRPKV-------AFAGNNDEPYVEI 740
Query: 794 KGLWHP-FALGENGGLPVPNDILLG-EDSDDC--LPRTLLLTGPNMGGKSTLLRATCLAV 849
+ HP + +GG +PND ++G +DS++C ++L+TGPNMGGKSTL+R L
Sbjct: 741 RNGRHPCISQTFSGGDFIPNDTIIGIKDSNNCNETGNSVLVTGPNMGGKSTLMRQVGLLA 800
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQLGC+VP C LS D +FTRLGA+DRIM+GESTF VE +ET ++L+ AT+ SLV+
Sbjct: 801 IMAQLGCYVPATSCCLSPVDRLFTRLGASDRIMSGESTFFVELSETTTILRHATKHSLVL 860
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA AV L I CR LF+THYH L ++F S P+V L HMAC
Sbjct: 861 LDELGRGTATYDGTAIAGAVVSHLAHEIKCRTLFSTHYHSLVEDFVSDPNVRLGHMACMV 920
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ N ++ + + FLY+ +GACP+SYG A +AG+P V+ A A + S
Sbjct: 921 E-NEDDDDPSKETITFLYKFVAGACPKSYGFNAARLAGLPDNVIVKAKRKAKEFESS 976
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/476 (29%), Positives = 215/476 (45%), Gaps = 92/476 (19%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
+W+ +D+ R DP YD RTL++P LK+ + +Q+W +KS+ D +L FKV
Sbjct: 10 LKWMQDGFRKDSKGRLQSDPEYDSRTLWLPSGFLKEQTPLMRQWWQIKSENFDSVLCFKV 69
Query: 294 GKFYELYELDAEIGHKELD---WKITLS--GVGKCRQVGISESGIDDAVEKLVARGYKVG 348
GKFYE+Y +DA IG EL ++T S V C G E E L RGY+V
Sbjct: 70 GKFYEMYHMDALIGISELGLILMRVTQSSTAVAHC---GFPEIAFSRYAETLAQRGYRVV 126
Query: 349 RIEQLETSEQAKARHTNS--------VISRKLVNVVTPST---TVDGTIGPDA--VHLLA 395
R+EQ ET + + R +S V++R++ +T +T +V P++ LLA
Sbjct: 127 RVEQTETPQMMEERVKSSTRPTKFDKVVNREVCGRITKATRTFSVQNYEDPNSENAFLLA 186
Query: 396 IKEGNCGPDN---GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
I E D+ G + G F+D + +G DD C+ L L+ P +++YE
Sbjct: 187 IIERE--RDDLAVGHSLLGVCFLDTTIGKFHLGQFTDDRQCSRLRTLVTHFQPVQILYER 244
Query: 453 RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF--------NGSS 504
+ + Q + + L P ++F D++ K++ YF + S
Sbjct: 245 GKVSSKLQHIFQHDLLSAMKDALAPG---SEFWDSNNTLKILSEKSYFTKDGNEADDASL 301
Query: 505 SPWSKALENVMQ-----------HDIGFSALGGLISHLSRLMLD---------------- 537
W + L N ++ +D+ SALG I +L++ LD
Sbjct: 302 DTWPETLRNFVEGDGFGITAKEDYDLTVSALGASIWYLTKCFLDYDLMSLKNFEEYVPPD 361
Query: 538 ----DVLRNGDILPYKVYRDCLRMDGQTLY--------------------LDSCVTSSGK 573
D L G+IL +K + +D TL LD CVT +GK
Sbjct: 362 APSPDRLVAGNILKHK----HMILDAVTLINLDILPTASDSGLRGTLLEKLDYCVTPTGK 417
Query: 574 RLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
RL + W+C PL D IN+RLD VE LM S V LRK+PDLE+L+ ++ +
Sbjct: 418 RLFKHWLCTPLCDPVLINDRLDSVEDLMAMSSAVSDCLNTLRKIPDLEKLINKIHS 473
>gi|309805987|ref|ZP_07700013.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 03V1-b]
gi|308167590|gb|EFO69743.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 03V1-b]
Length = 854
Score = 248 bits (634), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 240/880 (27%), Positives = 393/880 (44%), Gaps = 178/880 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSNSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDKQIFLKK--AGITLSQPVKLSKEHAEVSYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ + L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS-----LSRIFKPPIFDGSDG----- 695
F + L+ DL++ L KEG II S L R ++ + +G
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDR-YRDAMMNGKKWLADMA 441
Query: 696 -----------------------------------LDKF-----LTQFEAAIDSDFPDYQ 715
LD++ LT E I + +
Sbjct: 442 NSEREKTGINNLRVGYNKVFGYYIEVTNSYKDKVPLDRYMRKQTLTNAERYITVELKE-- 499
Query: 716 NHDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSG 766
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 -HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNY 558
Query: 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDC 823
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 559 VC-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN-- 601
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++
Sbjct: 602 ---IFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLIS 658
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G+STF+VE +E L AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LF
Sbjct: 659 GKSTFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLF 718
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
ATHYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 719 ATHYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVA 769
Query: 1004 VMAGVPQKVVEAASHAALAMKK-SIGESFKSSEQRSEFSS 1042
+AG+P KV+ A+H ++K S ++ S EQ F S
Sbjct: 770 QLAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLDLFGS 809
>gi|392348628|ref|XP_002729643.2| PREDICTED: DNA mismatch repair protein Msh6-like [Rattus norvegicus]
Length = 1361
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 185/296 (62%), Gaps = 13/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + + +DVL A + G M RP++L + ++ P L++
Sbjct: 1040 FDKNHKDWQSAVECTAVLDVLLCLASYSQGGDGPMCRPVLL-------LPGEDTHPFLEL 1092
Query: 794 KGLWHPFALGENGGLP-VPNDILLGEDSD---DCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G + D D +L+TGPNMGGKSTL+R L
Sbjct: 1093 KGSRHPCITKTFFGDDFIPNDILIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAGLLA 1152
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1153 VMAQMGCYVPAELCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVL 1212
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1213 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGHMACMV 1272
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 1273 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 1326
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 142/460 (30%), Positives = 216/460 (46%), Gaps = 72/460 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL P K RD NRRRPD P Y+ TLY+P + L + +++W KSQ D+++F+KV
Sbjct: 372 LEWLKPEKRRDENRRRPDHPDYNSSTLYVPEDFLNSCTPGMRRWWQFKSQNFDLVIFYKV 431
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 432 GKFYELYHMDAVIGVSELG---LIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 488
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 489 ETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKE 548
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
YG FVD + + ++G +DD C+ L L+ P ++++E L E +
Sbjct: 549 EDSSGHMRAYGVCFVDTSLGKFFLGQFSDDRHCSRLRTLVAHYPPVQILFEKGNLSTETK 608
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS------PWSKALENV 514
L+ + + L P + F DA++ + + GYF G+ P KA+ +
Sbjct: 609 TVLKGYWSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNEGSGAELPPVLKAMTSE 665
Query: 515 M---------QHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPYKV 550
+ ++ SALGG + +L + ++D L + G + P V
Sbjct: 666 SDSVGLTPGEESELSLSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDMVGTVKPGAV 725
Query: 551 YRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDV 587
+ + +D TL LD+C T GKRLL+ W+C PL
Sbjct: 726 FTKASQRMVLDAVTLSNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSP 785
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD +E LM + V VA L+KLPDLERLL ++
Sbjct: 786 SAISDRLDAIEDLMAVPDKVAEVADLLKKLPDLERLLSKI 825
>gi|293347880|ref|XP_002726765.1| PREDICTED: DNA mismatch repair protein Msh6-like [Rattus norvegicus]
gi|149050458|gb|EDM02631.1| rCG61559 [Rattus norvegicus]
Length = 1361
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 185/296 (62%), Gaps = 13/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + + +DVL A + G M RP++L + ++ P L++
Sbjct: 1040 FDKNHKDWQSAVECTAVLDVLLCLASYSQGGDGPMCRPVLL-------LPGEDTHPFLEL 1092
Query: 794 KGLWHPFALGENGGLP-VPNDILLGEDSD---DCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G + D D +L+TGPNMGGKSTL+R L
Sbjct: 1093 KGSRHPCITKTFFGDDFIPNDILIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAGLLA 1152
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1153 VMAQMGCYVPAELCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVL 1212
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1213 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKNVCVRLGHMACMV 1272
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 1273 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 1326
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 142/460 (30%), Positives = 215/460 (46%), Gaps = 72/460 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL P K RD NRRRPD P Y+ TLY+P + L + +++W KSQ D+++F+KV
Sbjct: 372 LEWLKPEKRRDENRRRPDHPDYNSSTLYVPEDFLNSCTPGMRRWWQFKSQNFDLVIFYKV 431
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 432 GKFYELYHMDAVIGVSELG---LIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 488
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 489 ETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKE 548
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
YG FVD + + ++G +DD C+ L L+ P ++++E L E +
Sbjct: 549 EDSSGHMRAYGVCFVDTSLGKFFLGQFSDDRHCSRLRTLVAHYPPVQILFEKGNLSTETK 608
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS------PWSKALENV 514
L+ + L P + F DA++ + + GYF G+ P KA+ +
Sbjct: 609 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNEGSGAELPPVLKAMTSE 665
Query: 515 M---------QHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPYKV 550
+ ++ SALGG + +L + ++D L + G + P V
Sbjct: 666 SDSVGLTPGEESELSLSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDMVGTVKPGAV 725
Query: 551 YRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDV 587
+ + +D TL LD+C T GKRLL+ W+C PL
Sbjct: 726 FTKASQRMVLDAVTLSNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSP 785
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD +E LM + V VA L+KLPDLERLL ++
Sbjct: 786 SAISDRLDAIEDLMAVPDKVAEVADLLKKLPDLERLLSKI 825
>gi|440906162|gb|ELR56463.1| DNA mismatch repair protein Msh6 [Bos grunniens mutus]
Length = 1361
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 185/297 (62%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL + G M RP+IL P+ P P L
Sbjct: 1040 FDKNYKDWQAAVECIAVLDVLLCLTNYSRGGDGPMCRPIILLPEEDTP--------PFLD 1091
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1151
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1152 AIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1211
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1271
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ +GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 VENECEDPSQ--ETITFLYKFINGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1326
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 154/550 (28%), Positives = 243/550 (44%), Gaps = 98/550 (17%)
Query: 168 NEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDS-SKRMRLLQDSVAGV----- 221
+ D G DTP +V P+ KR++ N ++ K + + S +KR +
Sbjct: 284 DSDSEGLDTPV--KVAPKRKRMVTGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFS 341
Query: 222 --KNCEEEADTT--------------SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPE 265
+N E +A + EWL K RD +RRRPD P +D TLY+P +
Sbjct: 342 VPQNSEPQAHISGGCDDSNRPTVWYHETLEWLKEEKRRDVHRRRPDHPDFDASTLYVPED 401
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
L + +++W +KSQ D+++F+KVGKFYE+Y +DA IG EL G
Sbjct: 402 FLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYEMYHMDALIGVSELGLVFM---KGNWAH 458
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR--------HTNSVISRKLVNVVT 377
G E + LV +GYKV R+EQ ET E +AR + V+ R++ ++T
Sbjct: 459 SGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIIT 518
Query: 378 PSTTVDGTIGPD-----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
T + D + +LL++KE + VYG FVD + R ++G +DD
Sbjct: 519 KGTQTYSVLEGDPSENYSKYLLSLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSDDRH 578
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK 492
C+ L+ P +V++E L + + L+ + S L P + F DA++ +
Sbjct: 579 CSRFRTLVAHYPPVQVLFEKGNLSMDTKMILKSSLSSSLQEGLIPG---SQFWDAAKTLR 635
Query: 493 LVQLNGYFNG-----------------SSSPWSKALENVMQHDIGFSALGGLISHLSRLM 535
+ GYF +S S L + ++ SALGG + +L + +
Sbjct: 636 TLLEEGYFTDKLNEDGGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCL 695
Query: 536 LDDVL--------------------RNGDILPYKVYR---DCLRMDGQTLYL-------- 564
+D L R G + R D + ++ ++L
Sbjct: 696 IDQELLSMANFEEYVPLDSDMVHATRPGAVFAKANQRMVLDAVTLNNLEIFLNGTNGSTE 755
Query: 565 -------DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
D+C T GKRLL+ W+C PL + IN+RLD +E LM + + V L+KL
Sbjct: 756 GTLLEKIDTCHTPFGKRLLKQWLCAPLCNPHAINDRLDAIEDLMVVPDKISEVVDLLKKL 815
Query: 618 PDLERLLGRV 627
PDLERLL ++
Sbjct: 816 PDLERLLSKI 825
>gi|325913769|ref|ZP_08176130.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 60-B]
gi|325476969|gb|EGC80120.1| DNA mismatch repair protein MutS [Lactobacillus iners UPII 60-B]
Length = 854
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 239/879 (27%), Positives = 392/879 (44%), Gaps = 176/879 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSSSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDEQIFLKK--AGITLSQPVKLSGEHAEVSYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSTKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ + L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS------------------------- 680
F + L+ DL++ L KEG II S
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDRYRDAMINGKKWLADMAN 442
Query: 681 --------------LSRIFKPPI-----FDGSDGLDKF-----LTQFEAAIDSDFPDYQN 716
+++F I + LD++ LT E I + +
Sbjct: 443 SEREKTGINNLRVGYNKVFGYYIEVTNSYKNKVPLDRYMRKQTLTNAERYITVELKE--- 499
Query: 717 HDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSGA 767
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYV 559
Query: 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCL 824
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 560 C-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN--- 601
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++G
Sbjct: 602 --IFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISG 659
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
+STF+VE +E L AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LFA
Sbjct: 660 KSTFMVEMSEANIALNNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFA 719
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 720 THYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVAQ 770
Query: 1005 MAGVPQKVVEAASHAALAMKK-SIGESFKSSEQRSEFSS 1042
+AG+P KV+ A+H ++K S ++ S EQ F S
Sbjct: 771 LAGLPTKVLREATHMLKQLEKHSDNQAAFSDEQLDLFGS 809
>gi|426223707|ref|XP_004023308.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
[Ovis aries]
Length = 1352
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 184/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL + G M RP+IL P+ P P L
Sbjct: 1031 FDKNYKDWQAAVECIAVLDVLLCLTNYSRGGDGPMCRPIILLPEEDTP--------PFLD 1082
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1083 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1142
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1143 AIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1202
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1203 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNIAVRLGHMACM 1262
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1263 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1317
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 157/550 (28%), Positives = 244/550 (44%), Gaps = 98/550 (17%)
Query: 168 NEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDS-SKRMRLLQDSVAGV----- 221
+ D G DTP +V P+ KR++ N ++ K + + S +KR + +
Sbjct: 275 DSDSEGLDTPV--KVAPKRKRMVTGNGSLKRKSSRKEMPSATKRATGISSEIKNTLSAFS 332
Query: 222 --KNCEEEADTT--------------SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPE 265
+N E +A + EWL K RD +RRRPD P +D TLY+P +
Sbjct: 333 VPQNPESQAHISGGCDDSNRPTVWYHETLEWLKEEKRRDVHRRRPDHPDFDASTLYVPED 392
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
L + +++W +KSQ D+++F+KVGKFYELY DA IG EL G
Sbjct: 393 FLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYRRDALIGVSELGLVFM---KGNWAH 449
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR-----HT---NSVISRKLVNVVT 377
G E + LV +GYKV R+EQ ET + +AR HT + V+ R++ V+T
Sbjct: 450 SGFPEIAFGRYSDSLVQKGYKVARVEQTETPDMMEARCRKMAHTSKYDRVVMREICRVIT 509
Query: 378 PSTTVDGTIGPD-----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
T + D + +LL++KE + VYG FVD + R ++G +DD
Sbjct: 510 KGTQTYSVLEGDPSENYSKYLLSLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSDDRH 569
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK 492
C+ L+ P +V++E L E + L+ + S L P + F DA++ +
Sbjct: 570 CSRFRTLVAHYPPVQVLFEKGNLSTETKMILKSSLSSSLQEGLIPG---SQFWDAAKTLR 626
Query: 493 LVQLNGYFNG-----------------SSSPWSKALENVMQHDIGFSALGGLISHLSRLM 535
+ GYF ++ S L + ++ SALGG + +L + +
Sbjct: 627 TLLEEGYFTDKLNEDGGVMLPQVLKGMTAESDSIGLTPGEKSELALSALGGCVFYLKKCL 686
Query: 536 LDDVL--------------------RNGDILPYKVYR---DCLRMDGQTLYL-------- 564
+D L R G + R D + + ++L
Sbjct: 687 IDQELLSMANFEEYVPLDSDMVHATRPGAVFTKANQRMVLDAVTLSNLEIFLNGTNGSTE 746
Query: 565 -------DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
D+C T GKRLL+ W+C PL + IN+RLD +E LM + + V L+KL
Sbjct: 747 GTLLEKIDTCHTPFGKRLLKQWLCAPLCNPHAINDRLDAIEDLMVVPDKISEVVDLLKKL 806
Query: 618 PDLERLLGRV 627
PDLERLL ++
Sbjct: 807 PDLERLLSKI 816
>gi|300794942|ref|NP_001179666.1| DNA mismatch repair protein Msh6 [Bos taurus]
gi|296482664|tpg|DAA24779.1| TPA: mutS homolog 6 [Bos taurus]
Length = 1360
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 184/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL + G M RP+IL P+ P P L
Sbjct: 1039 FDKNYKDWQAAVECIAVLDVLLCLTNYSRGGDGPMCRPIILLPEEDTP--------PFLD 1090
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1091 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1150
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1151 AIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1210
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1211 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1270
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1271 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 154/550 (28%), Positives = 243/550 (44%), Gaps = 98/550 (17%)
Query: 168 NEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDS-SKRMRLLQDSVAGV----- 221
+ D G DTP +V P+ KR++ N ++ K + + S +KR +
Sbjct: 283 DSDSEGLDTPV--KVAPKRKRMVTGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFS 340
Query: 222 --KNCEEEADTT--------------SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPE 265
+N E +A + EWL K RD +RRRPD P +D TLY+P +
Sbjct: 341 VPQNSEPQAHISGGCDDSNRPTVWYHETLEWLKEEKRRDVHRRRPDHPDFDASTLYVPED 400
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
L + +++W +KSQ D+++F+KVGKFYE+Y +DA IG EL G
Sbjct: 401 FLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYEMYHMDALIGVSELGLVFM---KGNWAH 457
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR--------HTNSVISRKLVNVVT 377
G E + LV +GYKV R+EQ ET E +AR + V+ R++ ++T
Sbjct: 458 SGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIIT 517
Query: 378 PSTTVDGTIGPD-----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
T + D + +LL++KE + VYG FVD + R ++G +DD
Sbjct: 518 KGTQTYSVLEGDPSENYSKYLLSLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSDDRH 577
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK 492
C+ L+ P +V++E L + + L+ + S L P + F DA++ +
Sbjct: 578 CSRFRTLVAHYPPVQVLFEKGNLSMDTKMILKSSLSSSLQEGLIPG---SQFWDAAKTLR 634
Query: 493 LVQLNGYF-----------------NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLM 535
+ GYF +S S L + ++ SALGG + +L + +
Sbjct: 635 TLLEEGYFIDKLNEDGGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCL 694
Query: 536 LDDVL--------------------RNGDILPYKVYR---DCLRMDGQTLYL-------- 564
+D L R G + R D + ++ ++L
Sbjct: 695 IDQELLSMANFEEYVPLDSDMVHATRPGAVFAKANQRMVLDAVTLNNLEIFLNGTNGSTE 754
Query: 565 -------DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
D+C T GKRLL+ W+C PL + IN+RLD +E LM + + V L+KL
Sbjct: 755 GTLLEKIDTCHTPFGKRLLKQWLCAPLCNPHAINDRLDAIEDLMVVPDKISEVVDLLKKL 814
Query: 618 PDLERLLGRV 627
PDLERLL ++
Sbjct: 815 PDLERLLSKI 824
>gi|309803573|ref|ZP_07697665.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 11V1-d]
gi|308164321|gb|EFO66576.1| DNA mismatch repair protein MutS [Lactobacillus iners LactinV 11V1-d]
Length = 854
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 233/862 (27%), Positives = 386/862 (44%), Gaps = 175/862 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSSSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDEQIFLKK--AGITLSQPVKLSGEHAEVSYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSTKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKV--- 653
+ + L+ + DLERL GRV + +Q A S V+P I + + +V
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRVALGSANARELLQLADSLAVVPEIINILANSKNEVLNN 382
Query: 654 FGSLVKGLRIAMDLLM--------LMHKEGHIIPS------------------------- 680
F + L+ DL++ L KEG II S
Sbjct: 383 FAQKIDPLKGIHDLIVKTIVENPPLSTKEGGIIKSGVSSQLDRYRDAMINGKKWLADMAN 442
Query: 681 --------------LSRIFKPPI-----FDGSDGLDKF-----LTQFEAAIDSDFPDYQN 716
+++F I + LD++ LT E I + +
Sbjct: 443 SEREKTGINNLRVGYNKVFGYYIEVTNSYKNKVPLDRYMRKQTLTNAERYITVELKE--- 499
Query: 717 HDVTDLDAETLS--ILIELFIEKASQWSEVIHAI-------SCIDVLRSFAVTASMSSGA 767
H+ L+A+ S + ELF + I A+ S +DVL +F++ + ++
Sbjct: 500 HEALILEAQDYSTDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLATFSLLSEQNNYV 559
Query: 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCL 824
P QD+ + I HP + + +P ND+ + E ++
Sbjct: 560 C-----------PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIP--NDVKMDEQTN--- 601
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
L+TGPNM GKST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++G
Sbjct: 602 --IFLITGPNMSGKSTYMRQLALIIIMAQIGCFIPADSAVLPIFDKIFTRIGAGDDLISG 659
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
+STF+VE +E L+ AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LFA
Sbjct: 660 KSTFMVEMSEANIALKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFA 719
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT H+ H+ ++ + L+FL+++ GA +SYG+ VA
Sbjct: 720 THYHELTDLDQELAHLKNIHVGA---------TQENGHLIFLHKILPGAADQSYGIHVAQ 770
Query: 1005 MAGVPQKVVEAASHAALAMKKS 1026
+AG+P KV+ A+H ++K+
Sbjct: 771 LAGLPTKVLREATHMLKQLEKN 792
>gi|153853167|ref|ZP_01994576.1| hypothetical protein DORLON_00561 [Dorea longicatena DSM 13814]
gi|149753953|gb|EDM63884.1| DNA mismatch repair protein MutS [Dorea longicatena DSM 13814]
Length = 876
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 258/915 (28%), Positives = 400/915 (43%), Gaps = 149/915 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY K +Y D +LF+++G FYE++ DA KEL+ +T G + G+
Sbjct: 3 QQYMQTKKEYPDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLEERAPMCGVPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D + +LV++GYKV EQ+E AK ++ R +V +VTP T +D T D
Sbjct: 63 AVDGYLNRLVSKGYKVAICEQMEDPATAKG-----LVKRDVVRIVTPGTNLD-TQALDET 116
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
I D+ YG + D + V I + L + + P E+I
Sbjct: 117 KNNYIMCIAYASDH----YGVSVADVSTGEYMVTEIENSEK---LFDEIYKFMPSELI-- 167
Query: 452 NRGLCKEA-QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
C EA + F L +T + + D + +++ L +F+ +
Sbjct: 168 ----CNEAFYMSGMDFELLKEKLGITVYSLDSWYFDDAICERI--LKEHFHAGTIEGL-- 219
Query: 511 LENVMQHDIGFSALGGL--------------ISHLS-----RLMLDDVLRNGDILPYKVY 551
+ +D G A G L ISHL+ + ML D ++ +
Sbjct: 220 --GLADYDCGVIAAGALMQYLVETQKRDLSHISHLTIYAAGKYMLLDSSTRRNLELCETL 277
Query: 552 RDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
RD + LD T+ G R LR +I PL D I RLD V+ LMKN+ +
Sbjct: 278 RDKQKRGSLLWVLDKTKTAMGARTLRKYIEQPLIDKNAIEKRLDAVDELMKNAISREEIR 337
Query: 612 QYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRI 663
+YL + DLERL+ ++ + +S +LP I + Q + L + L
Sbjct: 338 EYLSPVYDLERLVCKITYQSANPRDLIAFQTSLAMLPHIKCILSDMQTPLLKELYEELDT 397
Query: 664 AMDLLMLMH-----------KEGHIIPSLSRI----FKPPIFDGSDGLDKFLTQ------ 702
DL L+ KEG II + DG D L K T
Sbjct: 398 LEDLCKLVSDSIREDPPIAMKEGGIIKDGYNAEVDKLRNAKSDGKDWLAKLETDEREKTG 457
Query: 703 -------------FEAAIDSDF----PDYQNHDVTDLDAETLSI--LIEL---------- 733
+ + + F PDY T +AE I L EL
Sbjct: 458 IKNLRIKYNKVFGYYLEVTNSFKDLVPDYYTRKQTLANAERYIIPELKELEDTILGAEDK 517
Query: 734 -FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR-QDNGGPVL 791
+ + +SEV I +V+R +++ L L +N VR + N ++
Sbjct: 518 LYALEYQLYSEVRDTIGK-EVVRIQKTAKAIAKLDAFASLALVAEQNNYVRPKMNDKGLI 576
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
IK HP + ND+ + D+ +D R ++TGPNM GKST +R T L V
Sbjct: 577 DIKDGRHPVVEK-----MISNDMFICNDTYLNDKKDRISIITGPNMAGKSTYMRQTALIV 631
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+G FVP + + D IFTR+GA+D + +G+STF+VE TE A++L+ AT SL+I
Sbjct: 632 LMAQIGSFVPASSANIGVVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLI 691
Query: 910 LDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
LDE+GRGTSTFDG +IA+AV + + + + LFATHYH LT+ +V +A
Sbjct: 692 LDEIGRGTSTFDGLSIAWAVIEYISNSKLLGAKTLFATHYHELTELEGKIENVNNYCIAV 751
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS- 1026
KGD +++FL ++ G +SYG+QVA +AGVPQ V + A + ++
Sbjct: 752 K--------EKGD-DIIFLRKIVKGGADKSYGIQVARLAGVPQSVTDRAKEIVEELVQAD 802
Query: 1027 ----IGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDD----------------DA 1066
I + ++ S+ + H + + + +S D DDD DA
Sbjct: 803 VTGRIKDIEVQGQESSKQKTKHFDEVD-LAQMSLFDTVKDDDVIKEIKDLDLANLTPIDA 861
Query: 1067 YDTLFCLWHELKNSY 1081
+TL+ L ++LKN +
Sbjct: 862 LNTLYQLQNKLKNRW 876
>gi|367048143|ref|XP_003654451.1| hypothetical protein THITE_2117497 [Thielavia terrestris NRRL 8126]
gi|347001714|gb|AEO68115.1| hypothetical protein THITE_2117497 [Thielavia terrestris NRRL 8126]
Length = 1231
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 179/575 (31%), Positives = 281/575 (48%), Gaps = 67/575 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D N+ P P +D ++YIPP A + SA +KQYW++K D ++FFK
Sbjct: 308 RYPWL--ANILDGNKNPPGHPDFDPTSIYIPPSAERGFSAFEKQYWDIKKNLWDTIVFFK 365
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+G+KV R++Q
Sbjct: 366 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGFKVARVDQ 423
Query: 353 LETS--EQAKARHTN-----SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ ++ + R +N +I R+L ++T T VDG + D A + AIKE
Sbjct: 424 MESALGKEMRERESNDKKAEKIIRRELTCILTGGTLVDGAMLQDDMATYCAAIKESVV-- 481
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + ++ DD + Q SP+E++ E L +A + L
Sbjct: 482 -DEKPAFGIAFVDAATGQFFLSEFEDDVDLTKFETFVAQTSPRELVLEKSRLSSKALRIL 540
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFN---GSSSPWSKALENVMQHDI 519
+ + + L P T+F DA ++ + +GYF G W K L + D+
Sbjct: 541 KNNTGPTTIWNYLKPG---TEFWDADLARRELDCSGYFTSEEGQEVVWPKKLGEAREKDL 597
Query: 520 GFSALGGLISHLSRLMLDD-VLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SALGGL +L L LD +L G+ Y ++R+ L +DGQ+L
Sbjct: 598 AMSALGGLTHYLRILKLDQSLLSQGNFESYNPIHRNGTLILDGQSLINLEVFANTVNGGP 657
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+CHPL +++ IN RLD V+ L+ + ++ + + K
Sbjct: 658 EGTLFSLLNRCITPFGKRLFRQWVCHPLCNIQKINERLDAVDMLIADRSILQQFSSQMAK 717
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
+PDLERL+ R+ A V L G + + + + G+ G + L+ M
Sbjct: 718 MPDLERLISRIHAGACRPEDFVRVLEGFEQIDYTMALLGAFGGGNGLVDRLIASM----- 772
Query: 677 IIPSLSRIFKPPI------FDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSIL 730
P+L K P+ FD D L E ++ DF D ++ + E ++L
Sbjct: 773 --PNL----KEPLGYWETAFDRRKARDSKLLIPERGVEEDF-DRSQDELARIKDELHALL 825
Query: 731 IELFIE---KASQWSEVIHAISCIDVLRSFAVTAS 762
K ++++V I I+V +S V AS
Sbjct: 826 ERQKTALKCKTLKFTDVGKEIYQIEVPKSVKVPAS 860
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/280 (40%), Positives = 153/280 (54%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I I+ +D L S A ++S RP+ + D+ V++ K L HP
Sbjct: 914 WLQAIRIIAQLDCLISLAKSSSALGMPSCRPVFV----------DDERSVVEFKELRHPC 963
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+PNDI LG D + LLTG N GKST+LR +C+AVI+AQ+GC VP
Sbjct: 964 MANTVADF-IPNDIKLGGDE----AKINLLTGANAAGKSTILRMSCIAVIMAQIGCHVPA 1018
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1019 ASARLTPIDRIMSRLGANDNIFAAQSTFFVELSETKKILAEATPRSLVILDELGRGTSSY 1078
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EFA HP V + M + +
Sbjct: 1079 DGVAVAQAVLHHVASHIGCVGFFATHYHSLAAEFAHHPEVRARRMQI-------RVDERE 1131
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLYRL G S+G+ A M G+P++V++ A AA
Sbjct: 1132 RRVTFLYRLEDGVAEGSFGMHCAAMCGIPRRVIDRAEVAA 1171
>gi|335285527|ref|XP_003354884.1| PREDICTED: DNA mismatch repair protein Msh6-like [Sus scrofa]
Length = 1362
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/301 (44%), Positives = 182/301 (60%), Gaps = 23/301 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P P P L
Sbjct: 1041 FDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTP--------PFLY 1092
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG-------EDSDDCLPRTLLLTGPNMGGKSTLLRA 844
+KG HP G +PNDIL+G D C+ L+TGPNMGGKSTL+R
Sbjct: 1093 LKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENDKAYCV----LVTGPNMGGKSTLMRQ 1148
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L ++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT
Sbjct: 1149 AGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATA 1208
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLV++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L H
Sbjct: 1209 HSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGH 1268
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
MAC ++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +
Sbjct: 1269 MACMVENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFE 1326
Query: 1025 K 1025
K
Sbjct: 1327 K 1327
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 154/558 (27%), Positives = 245/558 (43%), Gaps = 99/558 (17%)
Query: 163 SCTEMNEDVSGPDTPGMH---RVVPRLKRILEDNLNIGDKKNSSLLDS--------SKRM 211
S EM+ V D+ G+ ++ P+ KR++ N ++ K + + S S
Sbjct: 275 SSDEMSSGVGDSDSEGLDSPVKIAPKRKRMVTGNGSLKRKSSRKEMPSATKRAIGISSET 334
Query: 212 RLLQDSVAGVKNCEEEADTT--------------SKFEWLDPSKIRDANRRRPDDPLYDK 257
R + + +N E +A + EWL + RD +RRRPD P +D
Sbjct: 335 RSTLSAFSAPQNSEPQAHISGGCDDSNRPTVWYHETLEWLKEERRRDVHRRRPDHPDFDA 394
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
TLY+P + L + +++W +KSQ D+++F+KVGKFYELY +DA IG EL
Sbjct: 395 STLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIGVSELGLVFM- 453
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR--------HTNSVIS 369
G G E + LV +GYKV R+EQ ET E +AR + V+
Sbjct: 454 --KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVR 511
Query: 370 RKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWV 424
R++ V+T T + D + +LL++KE + VYG FVD + + ++
Sbjct: 512 REICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKEDDSSGHTRVYGVCFVDTSLGKFFI 571
Query: 425 GTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF 484
G +DD C+ L+ P +V++E L E + L+ + S L P + F
Sbjct: 572 GQFSDDRHCSRFRTLVAHYPPVQVLFEKGSLSTETKMILKGSLSSSLQEGLIPG---SQF 628
Query: 485 LDASEVKKLVQLNGYFNG-----------------SSSPWSKALENVMQHDIGFSALGGL 527
DA + + + GYF +S S L + ++ SALGG
Sbjct: 629 WDAGKTLRTLLEEGYFTDKLNEDSGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGC 688
Query: 528 ISHLSRLMLDDVL--------------------RNGDILPYKVYR---DCLRMDGQTLYL 564
+ +L + ++D L R G + R D + ++ ++L
Sbjct: 689 VFYLKKCLIDQELLSMANFEEYIPLDSDVVSASRPGAVFAKANQRMVLDAVTLNNLEIFL 748
Query: 565 ---------------DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
D+C T GKRLL+ W+C PL + I++RLD +E LM + +
Sbjct: 749 NATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRLDAIEDLMVVPDKISE 808
Query: 610 VAQYLRKLPDLERLLGRV 627
V L+KLPDLERLL ++
Sbjct: 809 VVDLLKKLPDLERLLSKI 826
>gi|164423588|ref|XP_959678.2| DNA mismatch repair protein msh6 [Neurospora crassa OR74A]
gi|157070157|gb|EAA30442.2| DNA mismatch repair protein msh6 [Neurospora crassa OR74A]
Length = 1237
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 228/433 (52%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I+DANR RP P YD ++Y+PP A ++ S + QYW +K D ++FFK
Sbjct: 315 RYPWL--ADIQDANRNRPGHPDYDPGSVYVPPSAWRQFSPFETQYWEIKKNLWDTVVFFK 372
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 373 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQ 430
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ KA+ + +I R+L ++T T VDG++ D AV+ AIKE
Sbjct: 431 MESALGKEMRERDTKAKKADKIIRRELTCILTGGTLVDGSMLQDDNAVYCAAIKESVV-- 488
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + ++ DD + Q SP+E+I E L +A + L
Sbjct: 489 -DDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFVAQTSPRELILEKSHLSTKALRIL 547
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDI 519
+ ++ + L P T+F DA ++ + +GYF G W L+ D+
Sbjct: 548 KNNTSPTTIWNYLKPG---TEFWDADVARRELDCSGYFVSGEGQEEVWPAKLKEARDKDL 604
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SALG L +L L L+ ++L G+ Y ++R+ L +DGQ+L
Sbjct: 605 LMSALGALTQYLRMLKLERNLLSQGNFAWYNPIHRNGTLILDGQSLINLEIFANTANGGP 664
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+CHPL +++ +N RLD V+ L + + + + K
Sbjct: 665 EGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDHSLREQFSSQMSK 724
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ R+ A
Sbjct: 725 MPDLERLISRIHA 737
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 156/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S + F W + I IS +D L S A +S RP+ + +
Sbjct: 905 EVASRFFKRFDLDYETWLQAIRIISQLDCLISLAKASSALGQPCCRPVFVNDERT----- 959
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
V++ L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 960 -----VVEFNELRHPCMLNTVDDF-IPNDIKLGGDEANIN----LLTGANAAGKSTILRM 1009
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1010 SCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1069
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1070 RSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARR 1129
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M A + EN + + FLY+L G S+G+ A M G+P KV+ + AA
Sbjct: 1130 MQIAV--DEEN-----KRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAA 1178
>gi|350287714|gb|EGZ68950.1| DNA mismatch repair protein msh6 [Neurospora tetrasperma FGSC 2509]
Length = 1243
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 227/433 (52%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I+DANR RP P YD ++Y+PP A ++ S + QYW +K D ++FFK
Sbjct: 321 RYPWL--ADIQDANRNRPGHPDYDPGSVYVPPSAWRQFSPFETQYWEIKKNLWDTVVFFK 378
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 379 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQ 436
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ KA+ + +I R+L ++T T VDG++ D AV+ AIKE
Sbjct: 437 MESALGKEMRERDTKAKKADKIIRRELTCILTGGTLVDGSMLQDDNAVYCAAIKESVV-- 494
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + ++ DD + Q SP+E+I E L +A + L
Sbjct: 495 -DDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFVAQTSPRELILEKSHLSTKALRIL 553
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDI 519
+ ++ + L P T+F DA ++ +GYF G W L+ D+
Sbjct: 554 KNNTSPTTIWNYLKPG---TEFWDADVARREFDCSGYFVSGEGQEEVWPAKLKEARDKDL 610
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SALG L +L L L+ ++L G+ Y ++R+ L +DGQ+L
Sbjct: 611 LMSALGALTQYLRMLKLERNLLSQGNFAWYNPIHRNGTLILDGQSLINLEIFANTANGGP 670
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+CHPL +++ +N RLD V+ L + + + + K
Sbjct: 671 EGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDHSLREQFSSQMSK 730
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ R+ A
Sbjct: 731 MPDLERLISRIHA 743
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 156/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S + F W + I IS +D L S A ++ RPL + +
Sbjct: 911 EVASRFFKRFDLDYETWLQAIRIISQLDCLISLAKASAALGQPCCRPLFVNDERT----- 965
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
V++ L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 966 -----VVEFNELRHPCMLNTVDDF-IPNDIKLGGDEANIS----LLTGANAAGKSTILRM 1015
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1016 SCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1075
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1076 RSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARR 1135
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M A + EN + + FLY+L G S+G+ A M G+P KV+ + AA
Sbjct: 1136 MQIAV--DEEN-----KRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAA 1184
>gi|325281290|ref|YP_004253832.1| DNA mismatch repair protein mutS [Odoribacter splanchnicus DSM 20712]
gi|324313099|gb|ADY33652.1| DNA mismatch repair protein mutS [Odoribacter splanchnicus DSM 20712]
Length = 871
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 245/847 (28%), Positives = 373/847 (44%), Gaps = 169/847 (19%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY+ K++Y D +L +++G FYE + DA + L +T G V G
Sbjct: 13 QQYYATKAKYPDAILLYRMGDFYETFGADAITTSRILGITLTKRSSGSPGTVELAGFPYH 72
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTP-------STTVDG 384
ID + KLV G +V EQLE ++ K ++ R ++ +VTP ST
Sbjct: 73 AIDTYLPKLVRAGQRVAICEQLEDPKKTKF-----LVKRGVIELVTPGACYSEYSTDTKS 127
Query: 385 TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
I +V+ G + +D + + + S A + LL
Sbjct: 128 NIFLASVYF------------NKTEAGLSLLDLSTGEF----LTTEGSHATIDKLLNSFQ 171
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGS 503
PKEVIY + + KF A ++ L+ EV L
Sbjct: 172 PKEVIYPRGQEARFHELFGNKFYIYPIEEWFFDRDAASERLEKHFEVNSLKGFGIEHMNC 231
Query: 504 SSPWSKALENVMQ---HDIGFSALGGLISHLSRL---------MLDD-VLRNGDILPYKV 550
+ A+ N ++ HD +ISH++ + +LD LRN ++L +
Sbjct: 232 GISSAGAILNYLEMTKHD--------MISHITSISRIDESHCVLLDKFTLRNLELL-HSA 282
Query: 551 YRDCLRMDGQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
Y + G++L +D +T G R LR WIC PLK E IN RLD+V++ ++ + +
Sbjct: 283 YEE-----GRSLVDIIDRTITPMGGRTLRRWICMPLKSPEEINQRLDIVDHFIRQEDRRL 337
Query: 609 VVAQYLRKLPDLERL-----LGRVKARVQ-----ASSCIVLPL----------IGKKVLK 648
+L + DLERL +GR+ R A SCI PL + KK+ +
Sbjct: 338 QAENFLESIGDLERLASKIGVGRITPREMNQLKIALSCIA-PLKDLCQQSESAVMKKMTE 396
Query: 649 ---------------------QQVKVFGSLVKGLRIAMD-----------LLMLMHK--- 673
QV G + G+ +D LL+ M +
Sbjct: 397 PLNPCTELFEKIKFQLQENAPHQVNKGGVIATGVNAELDELRNISSNGKELLLQMQQREI 456
Query: 674 EGHIIPSL----SRIFKPPIFDGSDGLDK---------FLTQFEAAIDSDFPDYQNHDVT 720
E IPSL + +F I DK L E I + +Y++ +
Sbjct: 457 EATGIPSLKIGFNNVFGYYIEVTKAHKDKAPANWIRKQTLVNGERYITPELKEYED-KIL 515
Query: 721 DLDAETLSILIELF---IEKASQW----SEVIHAISCIDVLRSFAVTASMSSGAMHRPLI 773
+ L+I EL+ +++A+ + E IS +DVL SFA + ++ HRP I
Sbjct: 516 GAEDRILAIETELYNNLLQEAAGYIRPLQEDAKIISALDVLISFAEISIANN--YHRPEI 573
Query: 774 LPQSKNPAVRQDNGGPVLKIKGLWHPFALGE--NGGLPVPNDILLGEDSDDCLPRTLLLT 831
N VL IK HP + G + ND+LL D+ + +++T
Sbjct: 574 ------------NDSDVLDIKAGRHPVIEKQLPPGEEYISNDVLL----DNKKQQIIIIT 617
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNM GKS LLR T L VI+AQ GCFVP + D IFTR+GA+D I GESTF+VE
Sbjct: 618 GPNMAGKSALLRQTALIVIMAQAGCFVPAASAKIGYVDKIFTRVGASDNISQGESTFMVE 677
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHP 949
E A++L + SLV+ DELGRGTST+DG +IA+A+ L E + + + LFATHYH
Sbjct: 678 MNEAANILNNISDRSLVLFDELGRGTSTYDGISIAWAIVEYLHEHPKYHAKTLFATHYHE 737
Query: 950 LTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVP 1009
L + ++H K+ + + + +++FL +L G S+G+QV MAG+P
Sbjct: 738 LNE---------MEHSFKKIKNYNVSVKEVAHKVIFLRKLVKGGSNHSFGIQVGKMAGLP 788
Query: 1010 QKVVEAA 1016
Q V++ A
Sbjct: 789 QSVIKRA 795
>gi|242044644|ref|XP_002460193.1| hypothetical protein SORBIDRAFT_02g024370 [Sorghum bicolor]
gi|241923570|gb|EER96714.1| hypothetical protein SORBIDRAFT_02g024370 [Sorghum bicolor]
Length = 638
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/315 (45%), Positives = 192/315 (60%), Gaps = 20/315 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI+LF+E ++W +++ ++ +DVL S A+ +SG P P K ++D
Sbjct: 289 LQNLIQLFVEHHTEWRQLVSVVAELDVLISLAI----ASGYFEGPSCCPTIKESNGQEDT 344
Query: 787 GGPVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
P + L HP +LG+ G VPND+ +G + P ++LTGPNMGGKSTLL
Sbjct: 345 --PTFHARNLGHPILRSDSLGK--GSFVPNDVKIGGSGN---PSFIVLTGPNMGGKSTLL 397
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CL +ILAQ+G VP E LSL D IF R+GA D IM G+STFLVE ETASVL A
Sbjct: 398 RQVCLTIILAQIGADVPAENLELSLVDRIFVRMGARDHIMAGQSTFLVELEETASVLSSA 457
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV+LDELGRGTST DG AIA +V LV ++ C LF+THYH L E V+L
Sbjct: 458 TKNSLVVLDELGRGTSTSDGQAIAASVLEYLVHQVQCLGLFSTHYHRLAME-RKDTKVSL 516
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HMAC G +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A+ +
Sbjct: 517 CHMACQVVEG----EGGLEEVTFLYRLTPGACPKSYGVNVARLAGIPTSVLQRANEKSSD 572
Query: 1023 MKKSIGESFKSSEQR 1037
+ + G+ K ++ +
Sbjct: 573 FEANYGKRHKMTKDK 587
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY---LR 615
TLY L+ CVT GKRLL+ WI PL D I R V + AQ+ L
Sbjct: 25 TLYAQLNHCVTGFGKRLLKRWIAKPLYDRSAILRRQSAVATFKGVGQ--DYAAQFRKDLS 82
Query: 616 KLPDLERLLGRVKARV----QASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
+LPD+ERLL R+ + ++SS +V K++L+Q + + L+
Sbjct: 83 RLPDMERLLARLFSSCDENKRSSSVVVYEDASKRLLQQFTAALRGCQQMFHACSSISTLI 142
Query: 672 HKEGHIIPSLSRIFKP--PIFDGSDGLDKFLTQFE 704
EG L+ + P + D S LD+F F+
Sbjct: 143 CTEG---SQLNDLLSPGKGLPDISSILDRFRDAFD 174
>gi|336467632|gb|EGO55796.1| DNA mismatch repair protein msh6 [Neurospora tetrasperma FGSC 2508]
Length = 1235
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 227/433 (52%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I+DANR RP P YD ++Y+PP A ++ S + QYW +K D ++FFK
Sbjct: 313 RYPWL--ADIQDANRNRPGHPDYDPGSVYVPPSAWRQFSPFETQYWEIKKNLWDTVVFFK 370
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 371 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQ 428
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ KA+ + +I R+L ++T T VDG++ D AV+ AIKE
Sbjct: 429 MESALGKEMRERDTKAKKADKIIRRELTCILTGGTLVDGSMLQDDNAVYCAAIKESVV-- 486
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + ++ DD + Q SP+E+I E L +A + L
Sbjct: 487 -DDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFVAQTSPRELILEKSHLSTKALRIL 545
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDI 519
+ ++ + L P T+F DA ++ +GYF G W L+ D+
Sbjct: 546 KNNTSPTTIWNYLKPG---TEFWDADVARREFDCSGYFVSGEGQEEVWPAKLKEARDKDL 602
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SALG L +L L L+ ++L G+ Y ++R+ L +DGQ+L
Sbjct: 603 LMSALGALTQYLRMLKLERNLLSQGNFAWYNPIHRNGTLILDGQSLINLEIFANTANGGP 662
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+CHPL +++ +N RLD V+ L + + + + K
Sbjct: 663 EGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDHSLREQFSSQMSK 722
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ R+ A
Sbjct: 723 MPDLERLISRIHA 735
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 156/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S + F W + I IS +D L S A ++ RPL + +
Sbjct: 903 EVASRFFKRFDLDYETWLQAIRIISQLDCLISLAKASAALGQPCCRPLFVNDERT----- 957
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
V++ L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 958 -----VVEFNELRHPCMLNTVDDF-IPNDIKLGGDEANIS----LLTGANAAGKSTILRM 1007
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1008 SCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1067
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1068 RSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRARR 1127
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M A + EN + + FLY+L G S+G+ A M G+P KV+ + AA
Sbjct: 1128 MQIAV--DEEN-----KRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAA 1176
>gi|33504503|ref|NP_878280.1| DNA mismatch repair protein Msh6 [Danio rerio]
gi|27882481|gb|AAH44350.1| MutS homolog 6 (E. coli) [Danio rerio]
Length = 1369
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 182/303 (60%), Gaps = 18/303 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + ++ +DVL S + + G+M RP + LP + P L
Sbjct: 1041 FDKNYKDWQTAVECMAVLDVLLSMCRYSQSADGSMARPEMALPGDGS------YSAPFLD 1094
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG--------EDSDDCLPRTLLLTGPNMGGKSTLLR 843
++G HP G +PNDI +G +D L +L+TGPNMGGKSTL+R
Sbjct: 1095 LRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEEEAQDDTKALAPCVLVTGPNMGGKSTLMR 1154
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
L VILAQLGC+VP E L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT
Sbjct: 1155 QCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILLHAT 1214
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLV+LDELGRGT+T+DG AIA AV ++L E+I CR LF+THYH L ++ P V L
Sbjct: 1215 NHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVEDHVQDPAVRLG 1274
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
HMAC ++ E+ S+ + + FLY+ GACP+SYG A +A +P+ V+++ A
Sbjct: 1275 HMACMVENECEDPSQ--ETITFLYKFIRGACPKSYGFNAARLANIPEDVIQSGHKKARDF 1332
Query: 1024 KKS 1026
++S
Sbjct: 1333 ERS 1335
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 158/531 (29%), Positives = 239/531 (45%), Gaps = 96/531 (18%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DA R+R D YD TLY+P + L + + +++W +KS+ D +LF+K
Sbjct: 368 KLEWLQDGKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMFDTVLFYK 427
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL+ G G E G + LV +GYKV R+EQ
Sbjct: 428 VGKFYELYHMDAVIGVNELNLTFM---KGTWAHSGFPEIGFGRFSDVLVQKGYKVARVEQ 484
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIGP-DAVHLLAIKEG 399
ET +AR + V+ R++ ++T T +DG + +LL+IKE
Sbjct: 485 TETPNMMEARCKKLARPTKFDKVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSIKEK 544
Query: 400 NCGPDNG-SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+ G +YG F+D + R +G DD C+ L L+ SP +VI+E E
Sbjct: 545 SEEDSTGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVIFEKGNPSIE 604
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA-------- 510
K + A S L A + F DA + K++ YF S KA
Sbjct: 605 TLKIFKAIVASSLQEGLN---AGSQFWDAQKTLKVLAEEDYFKESKDDNKKASVLPPALK 661
Query: 511 ----------LENVMQHDIGFSALGGLISHLSRLMLDDVLRN----GDILPYKVYRD--- 553
L +++ SALGG + +L + ++D L + + +P V +
Sbjct: 662 AMTPECDALSLTPKTGYELALSALGGCMFYLKKCLVDQELFSMGNFEEYVPVDVEMEQAG 721
Query: 554 ---CL------RM--DGQTL--------------------YLDSCVTSSGKRLLRSWICH 582
C RM DG TL LD+C T GKRLL+ WIC
Sbjct: 722 GASCFFAKTNQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWICA 781
Query: 583 PLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLI 642
PL ++ I +RLD +E LM V L+KLPDLERLL ++ + + PL
Sbjct: 782 PLCNLSSIGDRLDALEDLMGAPSQTSEVTDLLKKLPDLERLLSKIHS-------MGTPLK 834
Query: 643 G------KKVL-------KQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPS 680
G + +L K+++ F + ++G ++ +++ +M G + S
Sbjct: 835 GQDHPDSRAILYEEVVYSKRKIADFLAALEGFKVMKEIVSIMEPVGEDLKS 885
>gi|395829624|ref|XP_003787949.1| PREDICTED: DNA mismatch repair protein Msh6-like isoform 3 [Otolemur
garnettii]
Length = 1228
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 186/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + ++ +DVL + G M RP+IL ++ P L++
Sbjct: 908 FDKNYKDWQSAVECMAVLDVLLCLTNYSRGGDGPMCRPVIL--------LPEDTAPFLEL 959
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP + G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 960 KGSRHPCIMKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1019
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1020 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILKHATAHSLVL 1079
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1080 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1139
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1140 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1193
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 215/462 (46%), Gaps = 75/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 239 LEWLKKEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 298
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 299 GKFYELYHMDALIGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 355
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ V+T T + D + +LL++KE
Sbjct: 356 ETPEMMEARCRKMAHISKHDKVVRREICRVITKGTQTYSVLEGDPSEDYSKYLLSLKEKE 415
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ +YG FVD + + ++G +DD C+ L+ P +V++E L E +
Sbjct: 416 -DSSGHTRIYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSVETK 474
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-----------------NGS 503
L+ + S LTP + F DA + +++ GYF + +
Sbjct: 475 TVLKGSLSSSLQEGLTPG---SQFWDACKTLRILLEEGYFREKLSEDSGVMLPQVLKDMT 531
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL-----------RNGDIL----PY 548
S S L + ++ SALGG + +L + ++D L + DI+ P
Sbjct: 532 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDIVSATSPG 591
Query: 549 KVYRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
++ + +D TL +D+C T GKRLL+ W+C PL
Sbjct: 592 AIFMKANQRMVLDAVTLNNLEIFQNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 651
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD +E LM + + V L+KLPDLERLL ++
Sbjct: 652 SPYAISDRLDAIEDLMAFPDKISEVVDLLKKLPDLERLLSKI 693
>gi|395829620|ref|XP_003787947.1| PREDICTED: DNA mismatch repair protein Msh6-like isoform 1 [Otolemur
garnettii]
Length = 1358
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 186/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + ++ +DVL + G M RP+IL ++ P L++
Sbjct: 1038 FDKNYKDWQSAVECMAVLDVLLCLTNYSRGGDGPMCRPVIL--------LPEDTAPFLEL 1089
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP + G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1090 KGSRHPCIMKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1149
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 1150 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILKHATAHSLVL 1209
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1210 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1269
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1270 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1323
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 215/462 (46%), Gaps = 75/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 369 LEWLKKEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 428
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 429 GKFYELYHMDALIGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 485
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ V+T T + D + +LL++KE
Sbjct: 486 ETPEMMEARCRKMAHISKHDKVVRREICRVITKGTQTYSVLEGDPSEDYSKYLLSLKEKE 545
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ +YG FVD + + ++G +DD C+ L+ P +V++E L E +
Sbjct: 546 -DSSGHTRIYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSVETK 604
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-----------------NGS 503
L+ + S LTP + F DA + +++ GYF + +
Sbjct: 605 TVLKGSLSSSLQEGLTPG---SQFWDACKTLRILLEEGYFREKLSEDSGVMLPQVLKDMT 661
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL-----------RNGDIL----PY 548
S S L + ++ SALGG + +L + ++D L + DI+ P
Sbjct: 662 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDIVSATSPG 721
Query: 549 KVYRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
++ + +D TL +D+C T GKRLL+ W+C PL
Sbjct: 722 AIFMKANQRMVLDAVTLNNLEIFQNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 781
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD +E LM + + V L+KLPDLERLL ++
Sbjct: 782 SPYAISDRLDAIEDLMAFPDKISEVVDLLKKLPDLERLLSKI 823
>gi|291550404|emb|CBL26666.1| DNA mismatch repair protein MutS [Ruminococcus torques L2-14]
Length = 888
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 239/857 (27%), Positives = 373/857 (43%), Gaps = 163/857 (19%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ K++ K Y K QY D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 6 IDKLTPMMKIYCETKEQYKDCILFYRLGDFYEMFFDDALTASRELEITLTGKSCGLDERA 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI ++ + +LVA+GYKV EQ+E + AK ++ R++V +VTP T +D
Sbjct: 66 PMCGIPYHAVEGYLNRLVAKGYKVAICEQVEDPKTAKG-----IVKREVVRIVTPGTNLD 120
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVV--------YGFAFVDCAALRVWVGTINDDASCAA 435
A+ E N ++ YG A D + +V + D +
Sbjct: 121 TQ---------ALDETK----NNYIMCIVYIADRYGVAIADISTGDYFVTELPD---SSR 164
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ 495
L + + SP E+I C EA + +G + + +T +
Sbjct: 165 LMDEIYKFSPSEII------CNEAF-----YMSGMDLDAMRDKLGIT----------IYS 203
Query: 496 LNGYFNGSSSPWSKALEN----------VMQHDIGFSALGGLISHLSRLMLDDVLRNGDI 545
L+ ++ + K LE+ + +D G + G L+ +L + + I
Sbjct: 204 LDSWYFDDAVCKDKLLEHFKVKNFAGLGLADYDCGIISAGALLIYLFETQKNSLSNLTHI 263
Query: 546 LPY-------------------KVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKD 586
PY + R+ + LD T+ G R LR + PL D
Sbjct: 264 TPYITGKYMLIDSSTRRNLELCETLREKQKRGSLLWVLDKTRTAMGARTLRKNVEQPLID 323
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA--------RVQASSCIV 638
IN RLD VE L + + +YL + DLERL+ ++ S +
Sbjct: 324 KSEINRRLDAVEELKNQAIAREEIREYLSPVYDLERLITKITYGSANPRDLTAFKGSLEM 383
Query: 639 LPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM-----------HKEGHII-----PSLS 682
LP I + Q + + + L DL L+ KEG+II +
Sbjct: 384 LPPIRYILQDLQAPLLKEIYEDLDALEDLCELVTKAIREDPPLAMKEGNIIRDGYNEEVD 443
Query: 683 RIFKPPIFDGSDGLDK-----------------------FLTQFEAAIDSDFPDYQNHDV 719
++ + DG D L K + + + PDY
Sbjct: 444 KLRRAK-SDGKDWLAKLENDEREKTGIKNLKIKYNKVFGYYLEVTNSYKDLVPDYYTRKQ 502
Query: 720 TDLDAE--------TLSILI-----ELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSG 766
T +AE L +I +L+ + +SEV I+ V R ++++
Sbjct: 503 TLANAERYITPELKELEDMILGAEDKLYALEYELYSEVRETIAG-QVERIQQTAKAVAAL 561
Query: 767 AMHRPLILPQSKNPAVR-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS--DDC 823
L L +N VR + N +L IK HP +PND+ + D+ DD
Sbjct: 562 DAFSSLALVAERNNYVRPKINEKGILDIKEGRHPVV-----ERMIPNDMFIANDTYLDDK 616
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
R ++TGPNM GKST +R T L ++AQ+G FVP E + L+D IFTR+GA+D + +
Sbjct: 617 KHRISIITGPNMAGKSTYMRQTALIALMAQIGSFVPAESANICLSDRIFTRVGASDDLAS 676
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRL 941
G+STF+VE TE A++L+ AT SL+ILDE+GRGTSTFDG +IA+AV + + + +
Sbjct: 677 GQSTFMVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLSIAWAVVEYISDSKLLGAKT 736
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LFATHYH LT+ +V + A K KGD ++VFL ++ G +SYG+Q
Sbjct: 737 LFATHYHELTELEGKIDNV--NNYCIAVK------EKGD-DIVFLRKIVKGGADKSYGIQ 787
Query: 1002 VAVMAGVPQKVVEAASH 1018
VA +AGVP V+ A
Sbjct: 788 VAKLAGVPDLVISRAKE 804
>gi|449436747|ref|XP_004136154.1| PREDICTED: DNA mismatch repair protein MSH6-like [Cucumis sativus]
Length = 1307
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/313 (45%), Positives = 189/313 (60%), Gaps = 20/313 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI F E QW +++ AI+ +DVL S A+ + G +PL SK+ N
Sbjct: 957 LQRLIRKFCEHHLQWRQLVSAIAELDVLISLAIASDYYEGYTCQPLF---SKSQC---QN 1010
Query: 787 GGPVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
P K L HP +LGE G VPNDI +G + + LLTGPNMGGKSTLL
Sbjct: 1011 EVPRFTAKNLGHPILRSDSLGE--GTFVPNDITIGGSGANFI----LLTGPNMGGKSTLL 1064
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CL+VILAQ+G VP E L+ D IF R+GA D+IM+G+STFL E +ETA +L A
Sbjct: 1065 RQVCLSVILAQIGADVPAESFELAPVDRIFVRMGARDQIMSGQSTFLTELSETALMLSSA 1124
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++S+VILDELGRGT+T DG AIA +V V ++ CR +F+THYH L + P V+L
Sbjct: 1125 TRNSVVILDELGRGTATSDGQAIAESVLEHFVSKVQCRGVFSTHYHRLALAYHKDPRVSL 1184
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HMAC + G +E+ FLYRLT G CP+SYG+ VA +AG+P V+ A+ ++
Sbjct: 1185 HHMACRVGEG----NNGLEEVTFLYRLTPGTCPKSYGVNVARLAGLPNCVLTEAAAKSME 1240
Query: 1023 MKKSIGESFKSSE 1035
+ + G + + SE
Sbjct: 1241 FEVTYGMAGEESE 1253
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 171/533 (32%), Positives = 257/533 (48%), Gaps = 80/533 (15%)
Query: 207 SSKRMRLLQDSVAGVKNCEEEA-DTTSKFEWLDPSKIR-------DANRRRPDDPLYDKR 258
SS ++ +S + +K E A D +F + K R DAN+R P DP YD +
Sbjct: 273 SSMETKIKSESTSVLKGINEIASDALERFNSREAEKFRFLKEDRKDANKRCPGDPDYDPK 332
Query: 259 TLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS 318
TL++PP +K +S Q+Q+W KS++MD +LFFK+GKFYEL+E+DA IG KELD +
Sbjct: 333 TLHLPPYFVKNLSDGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELDLQYMKG 392
Query: 319 GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH-----TNSVISRKLV 373
C G E VEKL +GY+V IEQ ET EQ + R + V+ R++
Sbjct: 393 DQPHC---GFPERNFSLNVEKLARKGYRVLVIEQTETPEQLERRRKEKGSKDKVVKREIC 449
Query: 374 NVVTPSTTVDG---TIGPDAVHLLAIKEGNCGPDN-GSVVYGFAFVDCAALRVWVGTIND 429
VVT T +G ++ PDA +L+A+ E G +N + G VD A RV +G D
Sbjct: 450 AVVTKGTLTEGEMLSLNPDASYLMAVTENFYGLENQQERILGVCVVDVATSRVILGQFGD 509
Query: 430 DASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS- 488
D+ C+AL LL ++ P E+I + L E ++ L + EL P + +F DA
Sbjct: 510 DSECSALCCLLSELRPVEIIKPAKLLSPETERVLLTHTRNPLVNELVPLL---EFWDAEK 566
Query: 489 ---EVKKLVQ----------------LN---GYFNGSSSPWSKALENVMQHD----IGFS 522
EVK+L + LN N S L ++ D S
Sbjct: 567 TVQEVKRLFKGIANRSVSGSSSEASLLNDNAARENDGLSYMPDVLSELVTADENGSWALS 626
Query: 523 ALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCLR-----MDGQ-------------- 560
ALGG++ +L + LD+ L ++LP + D + +D
Sbjct: 627 ALGGILFYLKQAFLDETLLRFAKFELLPCSGFSDVISKPYMVLDAAALENLEIFENSRNG 686
Query: 561 ----TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQY 613
TLY L+ CVT+ GKRLL++W+ PL VE I R V L N + +
Sbjct: 687 DSSGTLYSQLNHCVTAFGKRLLKTWLARPLYHVESIEARQGAVASLRGDNLSFSLEFRKA 746
Query: 614 LRKLPDLERLLGRVKARVQASSCIVLPLI-GKKVLKQQVKVFGSLVKGLRIAM 665
L KLPD+ERLL R+ + +A+ + ++ + K+Q++ F S ++G + +
Sbjct: 747 LSKLPDMERLLARIFSNSEANGRNAINVVLYEDAAKKQLQEFISALRGCELML 799
>gi|15625580|gb|AAL04170.1|AF412834_1 mismatch repair protein Msh6 [Danio rerio]
Length = 1369
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/303 (43%), Positives = 182/303 (60%), Gaps = 18/303 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + ++ +DVL S + + G+M RP + LP + P L
Sbjct: 1041 FDKNYKDWQTAVECMAVLDVLLSMCRYSQSADGSMARPEMALPGDGS------YSAPFLD 1094
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG--------EDSDDCLPRTLLLTGPNMGGKSTLLR 843
++G HP G +PNDI +G +D L +L+TGPNMGGKSTL+R
Sbjct: 1095 LRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEEEAQDDAKALAPCVLVTGPNMGGKSTLMR 1154
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
L VILAQLGC+VP E L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT
Sbjct: 1155 QCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILLHAT 1214
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLV+LDELGRGT+T+DG AIA AV ++L E+I CR LF+THYH L ++ P V L
Sbjct: 1215 NHSLVLLDELGRGTATYDGTAIASAVVKELSEKICCRTLFSTHYHSLVEDHVQDPAVRLG 1274
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
HMAC ++ E+ S+ + + FLY+ GACP+SYG A +A +P+ V+++ A
Sbjct: 1275 HMACMVENECEDPSQ--ETITFLYKFIRGACPKSYGFNAARLANIPEDVIQSGHKKARDF 1332
Query: 1024 KKS 1026
++S
Sbjct: 1333 ERS 1335
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 158/531 (29%), Positives = 241/531 (45%), Gaps = 96/531 (18%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +DA R+R D YD TLY+P + L + + +++W +KS+ D +LF+K
Sbjct: 368 KLEWLQDGKRKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMFDTVLFYK 427
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL+ G G E G + LV +GYKV R+EQ
Sbjct: 428 VGKFYELYHMDAVIGVNELNLTFM---KGTWAHSGFPEIGFGRFSDVLVQKGYKVARVEQ 484
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIGP-DAVHLLAIKEG 399
ET + +AR + V+ R++ ++T T +DG + +LL+IKE
Sbjct: 485 TETPDMMEARCKKLARPTKFDKVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSIKEK 544
Query: 400 NCGPDNG-SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+ G +YG F+D + R +G DD C+ L L+ SP +VI+E E
Sbjct: 545 SEEDSTGHGHIYGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVIFEKGNPSIE 604
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS---------PWSK 509
K + A S L A + F DA + K++ YF S P K
Sbjct: 605 TLKIFKAIVASSLQEGLN---AGSQFWDAQKTLKVLAEEDYFKESKDDNKKESVLPPALK 661
Query: 510 ALENVMQ---------HDIGFSALGGLISHLSRLMLDDVLRN----GDILPYKVYRD--- 553
A+ + +++ SALGG + +L + ++D L + + +P V +
Sbjct: 662 AMTSECDALSLTPKTGYELALSALGGCMFYLKKCLVDQELFSMGNFEEYVPVDVEMEQAG 721
Query: 554 ---CL------RM--DGQTL--------------------YLDSCVTSSGKRLLRSWICH 582
C RM DG TL LD+C T GKRLL+ WIC
Sbjct: 722 GASCFFAKTNQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWICA 781
Query: 583 PLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLI 642
PL + I +RLD +E LM V L+KLPDLERLL ++ + + PL
Sbjct: 782 PLCNPSSIGDRLDALEDLMGAPSQTSEVTDLLKKLPDLERLLSKIHS-------MGTPLK 834
Query: 643 G------KKVL-------KQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPS 680
G + +L K+++ F + ++G ++ +++ +M G + S
Sbjct: 835 GQDHPDSRAILYEEVVYSKRKIADFLAALEGFKVMKEIVSIMEPVGEGLKS 885
>gi|15235223|ref|NP_192116.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
gi|6226648|sp|O04716.2|MSH6_ARATH RecName: Full=DNA mismatch repair protein MSH6; Short=AtMSH6;
AltName: Full=MutS protein homolog 6
gi|3912921|gb|AAC78699.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana]
gi|5763966|emb|CAB53337.1| mismatch repair protein msh6-1 [Arabidopsis thaliana]
gi|7268591|emb|CAB80700.1| G/T DNA mismatch repair enzyme [Arabidopsis thaliana]
gi|332656719|gb|AEE82119.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
Length = 1324
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 208/354 (58%), Gaps = 25/354 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
LI F E +W +++ A + +DVL S A + G RP+I + +G P
Sbjct: 989 LIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVISGST-------SDGVP 1041
Query: 790 VLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L GL HP G++ G VPN++ +G +LLTGPNMGGKSTLLR CL
Sbjct: 1042 HLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASF---ILLTGPNMGGKSTLLRQVCL 1098
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVILAQ+G VP E +S D I R+GA D IM G+STFL E +ETA +L AT++SL
Sbjct: 1099 AVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSL 1158
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGT+T DG AIA +V +E++ CR F+THYH L+ ++ ++P V+L HMAC
Sbjct: 1159 VVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMAC 1218
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A + +
Sbjct: 1219 QIGEG----IGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALY 1274
Query: 1028 GESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY 1081
G++ + ++ + +++ +K I +S V +SD + D+L C H + N++
Sbjct: 1275 GKNHRKTDHK--LAAM----IKQI--ISSVASDSDYSASKDSL-CELHSMANTF 1319
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 164/531 (30%), Positives = 262/531 (49%), Gaps = 83/531 (15%)
Query: 202 SSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIR-------DANRRRPDDPL 254
+S+++ +K++ V G+++ + D ++F D K R DA RRRP D
Sbjct: 304 ASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAKRRRPTDEN 363
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD RTLY+PP+ +KK++ Q+Q+W K+++MD ++FFK+GKFYEL+E+DA +G KELD +
Sbjct: 364 YDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQ 423
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-----VIS 369
C G E +EKLV +GY+V +EQ ET +Q + R + V+
Sbjct: 424 YMKGEQPHC---GFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVK 480
Query: 370 RKLVNVVTPSTTVDGTI---GPDAVHLLAIKEGNCGPDNGSVVYGFA--FVDCAALRVWV 424
R++ VVT T DG + PDA +L+A+ EG N + + F VD A ++ +
Sbjct: 481 REVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIIL 540
Query: 425 GTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF 484
G DD C+AL LL ++ P E+I + L ++ + + + L P +++F
Sbjct: 541 GQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVP---LSEF 597
Query: 485 LDASEVKKLVQL---------------NGYFNGSSSPW-SKALENVMQHD----IGFSAL 524
D+ + V + G G S + K L + D + SAL
Sbjct: 598 WDSEKTIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSAL 657
Query: 525 GGLISHLSRLMLDD-VLRNGDI--LPYKVYRDC-----LRMDGQ---------------- 560
GG I +L + LD+ +LR LPY + + + +D
Sbjct: 658 GGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGY 717
Query: 561 --TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLR 615
TLY L+ C+T+SGKRLL++W+ PL + E I R D V L +N + + L
Sbjct: 718 SGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLS 777
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVL------KQQVKVFGSLVKG 660
+LPD+ERL+ R+ + ++AS G KV+ K+QV+ F S ++G
Sbjct: 778 RLPDMERLIARMFSSIEASG-----RNGDKVVLYEDTAKKQVQEFISTLRG 823
>gi|116203755|ref|XP_001227688.1| hypothetical protein CHGG_09761 [Chaetomium globosum CBS 148.51]
gi|88175889|gb|EAQ83357.1| hypothetical protein CHGG_09761 [Chaetomium globosum CBS 148.51]
Length = 1221
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 166/526 (31%), Positives = 258/526 (49%), Gaps = 62/526 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D N+ P P +D ++YIPP A + S +KQYW++K + D ++FFK
Sbjct: 304 RYPWL--ANILDGNKNPPGHPEFDPTSIYIPPLAERGFSPFEKQYWDIKKKLWDTVVFFK 361
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 362 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQ 419
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ + A+ + +I R+L ++T T VDG++ D A + AIKE
Sbjct: 420 MESALGKEMRERDSNAKKADKIIRRELACILTGGTLVDGSMLQDDMATYCAAIKESVV-- 477
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
N +G AFVD A + ++ DD + Q SP+E++ E L +A + L
Sbjct: 478 -NDKPAFGIAFVDAATGQFFLSEFEDDVDLTKFETFVAQTSPRELVLEKSRLSTKALRIL 536
Query: 464 RKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDI 519
+ + + L P T+F A ++ ++ GYF G+ W K L D+
Sbjct: 537 KNNTGPTTIWNNLKPE---TEFWGADLARRELECGGYFVSEGGAEEVWPKTLAESKDKDL 593
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SA+GGL +L LMLD ++L G+ Y ++R+ L +DGQ+L
Sbjct: 594 AISAMGGLTHYLRVLMLDRNLLSQGNFAWYNPIHRNGTLILDGQSLINLEIFTNTANNGP 653
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+CHPL + + IN RLD V+ L + ++ + + K
Sbjct: 654 EGTLFNLLNRCITPFGKRLFRQWVCHPLCNTQKINERLDAVDMLNADRSILQQFSSQMAK 713
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
+PDLERL+ R+ A V L G + + + + G+ G + L+ M
Sbjct: 714 MPDLERLISRIHAGACRPQDFVRVLEGFEQIDYTMGLLGAFGGGNGLVDRLIASM----- 768
Query: 677 IIPSLSRIFKPPIFDGSDGLDKFLTQ-----FEAAIDSDFPDYQNH 717
P L K P+ D+ + + E I+ DF + QN
Sbjct: 769 --PDL----KEPLGYWETAFDRTMARDGKLIPEKGIEEDFDNSQNE 808
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 154/280 (55%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I I+ +D L S A ++S RP+ + + ++ V++ K L HP
Sbjct: 909 WLQAIRIIAQLDCLTSLAKSSSALGVPSCRPVFIDEDRS----------VVEFKELRHPC 958
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+PNDI LG D + LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 959 MTNSVDDF-IPNDIKLGGDE----AKINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPA 1013
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1014 LSATLTPIDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1073
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EFA HP V + M + +
Sbjct: 1074 DGVAVAQAVLHHVASHIGCVGFFATHYHSLAAEFAQHPEVRARRMQI-------DVDEAR 1126
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLYRL G S+G+ A M G+P +V++ A AA
Sbjct: 1127 KRVTFLYRLEDGVAEGSFGMHCAAMCGIPGRVIDRAEVAA 1166
>gi|334186287|ref|NP_001190656.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
gi|332656720|gb|AEE82120.1| DNA mismatch repair protein Msh6-1 [Arabidopsis thaliana]
Length = 1321
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 208/354 (58%), Gaps = 25/354 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
LI F E +W +++ A + +DVL S A + G RP+I + +G P
Sbjct: 986 LIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVISGST-------SDGVP 1038
Query: 790 VLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L GL HP G++ G VPN++ +G +LLTGPNMGGKSTLLR CL
Sbjct: 1039 HLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASF---ILLTGPNMGGKSTLLRQVCL 1095
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVILAQ+G VP E +S D I R+GA D IM G+STFL E +ETA +L AT++SL
Sbjct: 1096 AVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSL 1155
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGT+T DG AIA +V +E++ CR F+THYH L+ ++ ++P V+L HMAC
Sbjct: 1156 VVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMAC 1215
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A + +
Sbjct: 1216 QIGEG----IGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALY 1271
Query: 1028 GESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY 1081
G++ + ++ + +++ +K I +S V +SD + D+L C H + N++
Sbjct: 1272 GKNHRKTDHK--LAAM----IKQI--ISSVASDSDYSASKDSL-CELHSMANTF 1316
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/528 (31%), Positives = 262/528 (49%), Gaps = 80/528 (15%)
Query: 202 SSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIR----DANRRRPDDPLYDK 257
+S+++ +K++ V G+++ + D ++F D K R DA RRRP D YD
Sbjct: 304 ASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDAKRRRPTDENYDP 363
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
RTLY+PP+ +KK++ Q+Q+W K+++MD ++FFK+GKFYEL+E+DA +G KELD +
Sbjct: 364 RTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMK 423
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-----VISRKL 372
C G E +EKLV +GY+V +EQ ET +Q + R + V+ R++
Sbjct: 424 GEQPHC---GFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREV 480
Query: 373 VNVVTPSTTVDGTI---GPDAVHLLAIKEGNCGPDNGSVVYGFA--FVDCAALRVWVGTI 427
VVT T DG + PDA +L+A+ EG N + + F VD A ++ +G
Sbjct: 481 CAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILGQF 540
Query: 428 NDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA 487
DD C+AL LL ++ P E+I + L ++ + + + L P +++F D+
Sbjct: 541 KDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVP---LSEFWDS 597
Query: 488 SEVKKLVQL---------------NGYFNGSSSPW-SKALENVMQHD----IGFSALGGL 527
+ V + G G S + K L + D + SALGG
Sbjct: 598 EKTIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGA 657
Query: 528 ISHLSRLMLDD-VLRNGDI--LPYKVYRDC-----LRMDGQ------------------T 561
I +L + LD+ +LR LPY + + + +D T
Sbjct: 658 IYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGT 717
Query: 562 LY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLRKLP 618
LY L+ C+T+SGKRLL++W+ PL + E I R D V L +N + + L +LP
Sbjct: 718 LYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSRLP 777
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVL------KQQVKVFGSLVKG 660
D+ERL+ R+ + ++AS G KV+ K+QV+ F S ++G
Sbjct: 778 DMERLIARMFSSIEASG-----RNGDKVVLYEDTAKKQVQEFISTLRG 820
>gi|7012942|gb|AAF35250.1|AF227632_1 mismatch binding protein Mus3 [Zea mays]
Length = 629
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 150/344 (43%), Positives = 200/344 (58%), Gaps = 44/344 (12%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI+LF+E ++W +++ ++ +DVL S A+ +SG P S P +++ N
Sbjct: 286 LQNLIQLFVEHHTEWRQLVSVVAELDVLTSLAI----ASGYFEGP-----SCCPTIKESN 336
Query: 787 GG---PVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
G P + L HP +LG+ G VPND+ +G + ++LTGPNMGGKS
Sbjct: 337 GTDDTPTFHARNLGHPILRSDSLGK--GSFVPNDVKIGGPGNASF---IVLTGPNMGGKS 391
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
TLLR CL +ILAQ+G VP E LSL D IF R+GA D IM G+STFLVE ETASVL
Sbjct: 392 TLLRQVCLTIILAQIGADVPAEKLELSLVDRIFVRMGARDHIMAGQSTFLVELEETASVL 451
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
AT++SLV+LDELGRGTST DG AIA +V LV ++ C LF+THYH L E +
Sbjct: 452 SSATKNSLVVLDELGRGTSTSDGQAIAASVLEYLVHQVQCLGLFSTHYHRLAMEH-NDTK 510
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019
V+L HMAC G +E+ FLYRLT GACP+SYG+ VA +AG+P K+++ A+
Sbjct: 511 VSLCHMACEVVEG----GGGLEEVTFLYRLTPGACPKSYGVNVARLAGIPTKLLQRANE- 565
Query: 1020 ALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDD 1063
KSSE + + H+ + N V SDD
Sbjct: 566 ------------KSSEFEANYGKRHK-----MTNDKHVSAQSDD 592
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK-NSEVVMVVAQYLRKL 617
TLY L+ CVT GKRLL+ WI PL D I R V + + L +L
Sbjct: 22 TLYAQLNHCVTGFGKRLLKRWIAKPLYDCREILRRQSAVATFKGVGQDCAAQFRKDLSRL 81
Query: 618 PDLERLLGRVKARV----QASSCIVLPLIGKKVLKQ 649
PD+ERLL R+ + ++SS ++ KK+L+Q
Sbjct: 82 PDMERLLARLFSSCDENKRSSSVVLYEDASKKLLQQ 117
>gi|2104549|gb|AAB57798.1| AGAA.3 [Arabidopsis thaliana]
Length = 1362
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 208/354 (58%), Gaps = 25/354 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
LI F E +W +++ A + +DVL S A + G RP+I + +G P
Sbjct: 1027 LIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVI-------SGSTSDGVP 1079
Query: 790 VLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L GL HP G++ G VPN++ +G +LLTGPNMGGKSTLLR CL
Sbjct: 1080 HLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASF---ILLTGPNMGGKSTLLRQVCL 1136
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVILAQ+G VP E +S D I R+GA D IM G+STFL E +ETA +L AT++SL
Sbjct: 1137 AVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSL 1196
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGT+T DG AIA +V +E++ CR F+THYH L+ ++ ++P V+L HMAC
Sbjct: 1197 VVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMAC 1256
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A + +
Sbjct: 1257 QIGEG----IGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALY 1312
Query: 1028 GESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY 1081
G++ + ++ + +++ +K I +S V +SD + D+L C H + N++
Sbjct: 1313 GKNHRKTDHK--LAAM----IKQI--ISSVASDSDYSASKDSL-CELHSMANTF 1357
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 172/546 (31%), Positives = 264/546 (48%), Gaps = 89/546 (16%)
Query: 189 ILEDNLNIGDKKNSSLLDSSKRMRLLQDSVA-GVKNCEEEADTTSKFEWLDPSKIRDANR 247
++E IG K SLL K L+D+V G A + KF +L + RDA R
Sbjct: 306 VVEPAKKIGQGKPKSLLLVVKG---LEDNVLDGDALARFGARDSEKFRFLGVDR-RDAKR 361
Query: 248 RRPDDPLYDKRTLYIPPEALKKMSASQ--------KQYWNVKSQYMDVLLFFKVGKFYEL 299
RRP D YD RTLY+PP+ +KK++ Q +Q+W K+++MD ++FFK+GKFYEL
Sbjct: 362 RRPTDENYDPRTLYLPPDFVKKLTGGQVRRAHGNLRQWWEFKAKHMDKVVFFKMGKFYEL 421
Query: 300 YELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQA 359
+E+DA +G KELD + C G E +EKLV +GY+V +EQ ET +Q
Sbjct: 422 FEMDAHVGAKELDIQYMKGEQPHC---GFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQL 478
Query: 360 KARHTNS-----VISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKEGNCGPDNGSVVYG 411
+ R + V+ R++ VVT T DG + PDA +L+A+ EG N + +
Sbjct: 479 EQRRKETGSKDKVVKREVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHN 538
Query: 412 FA--FVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
F VD A ++ +G DD C+AL LL ++ P E+I + L ++ + + +
Sbjct: 539 FGVCLVDVATQKIILGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRN 598
Query: 470 SAALELTPAMAVTDFLDASEVKKLVQL---------------NGYFNGSSSPW-SKALEN 513
L P +++F D+ + V + G G S + K L
Sbjct: 599 PLVNNLVP---LSEFWDSEKTIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSE 655
Query: 514 VMQHD----IGFSALGGLISHLSRLMLDD-VLRNGDI--LPYKVYRDC-----LRMDGQ- 560
+ D + SALGG I +L + LD+ +LR LPY + + + +D
Sbjct: 656 LATEDKNGSLALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAA 715
Query: 561 -----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TLY L+ C+T+SGKRLL++W+ PL + E I R D V L
Sbjct: 716 LENLEIFENSRNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILR 775
Query: 602 -KNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVL------KQQVKVF 654
+N + + L +LPD+ERL+ R+ + ++AS G KV+ K+QV+ F
Sbjct: 776 GENLPYSLEFRKSLSRLPDMERLIARMFSSIEASG-----RNGDKVVLYEDTAKKQVQEF 830
Query: 655 GSLVKG 660
S ++G
Sbjct: 831 ISTLRG 836
>gi|301753267|ref|XP_002912469.1| PREDICTED: DNA mismatch repair protein Msh6-like [Ailuropoda
melanoleuca]
gi|281352643|gb|EFB28227.1| hypothetical protein PANDA_000220 [Ailuropoda melanoleuca]
Length = 1362
Score = 246 bits (628), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 184/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P+ P P L
Sbjct: 1041 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEEGTP--------PFLD 1092
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
++G HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1093 LRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLL 1152
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ GC++P E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1153 AVMAQTGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1212
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1213 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1272
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1273 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1327
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 211/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 371 LEWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 430
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG +L G G E + LV +GYKV R+EQ
Sbjct: 431 GKFYELYHMDALIGVNKLGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 487
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ V+T T + D + +LL++KE
Sbjct: 488 ETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKE 547
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + +G +DD C+ L+ P +V++E L E +
Sbjct: 548 EDSSGHTRVYGVCFVDTSLGKFLIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTETK 607
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DA++ + + GYF +
Sbjct: 608 MILKGSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEGYFKEKLNEDSGVMLPQVLKGMT 664
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPY-------------- 548
S S L + ++ SALGG + +L + ++D ++L + Y
Sbjct: 665 SESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSAAGPG 724
Query: 549 --------KVYRDCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
++ D + + +++ D+C T GKRLL+ W+C PL
Sbjct: 725 AFFAKANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLC 784
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
IN+RLD +E LM + + V L+KLPDLERLL ++
Sbjct: 785 SPYAINDRLDAIEDLMVVPDKISDVVDLLKKLPDLERLLSKI 826
>gi|431912701|gb|ELK14719.1| DNA mismatch repair protein Msh6 [Pteropus alecto]
Length = 1172
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/297 (44%), Positives = 185/297 (62%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P+ P L
Sbjct: 851 FDKNYKDWQAAVECITVLDVLLCLANYSRGGDGPMCRPVILLPKEDTPVF--------LD 902
Query: 793 IKGLWHP-FALGENGGLPVPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP + G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 903 LKGSRHPCISKTFFGDDFIPNDILIGCEEEEEENGRAYCVLVTGPNMGGKSTLMRQAGLL 962
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 963 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1022
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1023 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1082
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1083 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARVANLPEEVIQKGHRKAREFEK 1137
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 202 SSLLDSSKRMRLLQDSVAGVKN-CEEEADTT----SKFEWLDPSKIRDANRRRPDDPLYD 256
SS+ + KR R+ +S A V C++ + T EWL K RD +RRRPD P +D
Sbjct: 291 SSVKVAPKRKRMNSESQAHVSGGCDDSSRPTVWYHETLEWLKDGKRRDMHRRRPDHPDFD 350
Query: 257 KRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT 316
TLY+P + L + +++W +KSQ D+++F+KVGKFYELY +DA +G EL
Sbjct: 351 ASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALVGVNELGLVFM 410
Query: 317 LSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR 362
G G E + LV +GYKV R+EQ ET E +AR
Sbjct: 411 ---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEAR 453
>gi|395829622|ref|XP_003787948.1| PREDICTED: DNA mismatch repair protein Msh6-like isoform 2 [Otolemur
garnettii]
Length = 1056
Score = 246 bits (628), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 186/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + ++ +DVL + G M RP+IL ++ P L++
Sbjct: 736 FDKNYKDWQSAVECMAVLDVLLCLTNYSRGGDGPMCRPVIL--------LPEDTAPFLEL 787
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP + G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 788 KGSRHPCIMKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLA 847
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV+
Sbjct: 848 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILKHATAHSLVL 907
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 908 VDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 967
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 968 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1021
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/462 (30%), Positives = 215/462 (46%), Gaps = 75/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 67 LEWLKKEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 126
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 127 GKFYELYHMDALIGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 183
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ V+T T + D + +LL++KE
Sbjct: 184 ETPEMMEARCRKMAHISKHDKVVRREICRVITKGTQTYSVLEGDPSEDYSKYLLSLKEKE 243
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ +YG FVD + + ++G +DD C+ L+ P +V++E L E +
Sbjct: 244 -DSSGHTRIYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSVETK 302
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-----------------NGS 503
L+ + S LTP + F DA + +++ GYF + +
Sbjct: 303 TVLKGSLSSSLQEGLTPG---SQFWDACKTLRILLEEGYFREKLSEDSGVMLPQVLKDMT 359
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL-----------RNGDIL----PY 548
S S L + ++ SALGG + +L + ++D L + DI+ P
Sbjct: 360 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYFPLDSDIVSATSPG 419
Query: 549 KVYRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
++ + +D TL +D+C T GKRLL+ W+C PL
Sbjct: 420 AIFMKANQRMVLDAVTLNNLEIFQNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 479
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD +E LM + + V L+KLPDLERLL ++
Sbjct: 480 SPYAISDRLDAIEDLMAFPDKISEVVDLLKKLPDLERLLSKI 521
>gi|336421688|ref|ZP_08601844.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000159|gb|EGN30312.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
5_1_57FAA]
Length = 882
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 258/929 (27%), Positives = 408/929 (43%), Gaps = 161/929 (17%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ +++ +QY K +Y D +LF+++G FYE++ DA KEL+ +T G +
Sbjct: 1 MAELTPMMQQYMQTKKEYPDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLEERA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ +D + +LV++GYKV EQ+E AK ++ R +V +VTP T +D
Sbjct: 61 PMCGVPYHAVDGYLNRLVSKGYKVAICEQMEDPATAKG-----LVKRDVVRIVTPGTNLD 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
T D I D YG + D +V ++D L + +
Sbjct: 116 -TQSLDETKNNYIMCVVYIADR----YGLSVADVTTGDYFVTELDDSEK---LFDEIYKF 167
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTP-AMAVTDF-LDASEVKKLV---QLNG 498
P E+I C EA F L+L + +T + LDA + L
Sbjct: 168 MPSELI------CNEA------FYMSGMDLDLMKEKLGITIYSLDAWYFDDAICQRTLKE 215
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLI-----------SHLSRL--------MLDDV 539
+F+ S+ + +D G A G L+ SH++RL ML D
Sbjct: 216 HFHVSTMEGL----GLSDYDCGIIAAGALLQYLIETQKRDLSHITRLSAYATGKYMLLDS 271
Query: 540 LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
++ + R+ + LD T+ G R LR +I PL D I RLD V+
Sbjct: 272 STRRNLELCETLREKHKRGSLLWVLDKTKTAMGARCLRKFIEQPLIDKNSIERRLDAVDE 331
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQV 651
L +N+ + +YL + DLERL+ ++ + SS +LP I + + +
Sbjct: 332 LKQNAISREEIREYLTPVYDLERLVCKITYQSANPRDLIAFKSSLSMLPHIKYILEEMKS 391
Query: 652 KVFGSLVKGLRIAMDLLMLMHK-----------EGHII-----PSLSRIFKPPIFDGSDG 695
+ L + L DL L+ K EG II + R+ + DG D
Sbjct: 392 PLLKDLYERLDTLEDLCHLVEKAIKEDPPLAMKEGGIIRDGYNEEVDRL-RSAKSDGKDW 450
Query: 696 LDKFLTQ-------------------FEAAIDSDF----PDYQNHDVTDLDAETLSI--- 729
L K T + + + F PDY T +AE I
Sbjct: 451 LAKLETDEREKTGIKNLKIRYNKVFGYYLEVTNSFKHMVPDYYTRKQTLANAERYIIPEL 510
Query: 730 --LIELFIEKASQWSEVIHAISC-------IDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
L + + + + + + C +VLR +++ + L ++
Sbjct: 511 KELEDTILGAEDKLYALEYQLYCEARDKIAKEVLRIQTTAKAIAQLDAFASMALVAEQSR 570
Query: 781 AVR-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS--DDCLPRTLLLTGPNMGG 837
VR + N V+ IK HP +PND+ + D+ +D R ++TGPNM G
Sbjct: 571 YVRPKINEKGVIDIKDGRHPVVEK-----MIPNDMFISNDTYLNDKKNRISIITGPNMAG 625
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KST +R T L V++AQ+G FVP + L D IFTR+GA+D + +G+STF+VE TE A+
Sbjct: 626 KSTYMRQTALIVLMAQIGSFVPAASADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVAN 685
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFA 955
+L+ AT SL+ILDE+GRGTSTFDG +IA+AV + + + LFATHYH LT+
Sbjct: 686 ILRNATSKSLLILDEIGRGTSTFDGLSIAWAVIEHISSSRLLGAKTLFATHYHELTELEG 745
Query: 956 SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ----- 1010
+V + A K KGD +++FL ++ G +SYG+QVA +AGVP+
Sbjct: 746 KIDNV--NNYCIAVK------EKGD-DIIFLRKIVKGGADKSYGIQVARLAGVPESVTSR 796
Query: 1011 --KVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDD---- 1064
++VE HA + + I + ++ + H + + + +S D DDD
Sbjct: 797 AREIVEELVHADITTR--IKDIAVHGQEPPRLKARHYDEVD-LAQMSLFDTVKDDDVIEE 853
Query: 1065 ------------DAYDTLFCLWHELKNSY 1081
DA +TL+ L ++LKN +
Sbjct: 854 IKSLDVSNLTPIDALNTLYQLQNKLKNRW 882
>gi|417413734|gb|JAA53181.1| Putative mismatch repair atpase msh2 muts family, partial [Desmodus
rotundus]
Length = 1280
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 184/296 (62%), Gaps = 13/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL + +D+ L +
Sbjct: 959 FDKNYKNWQAAVECIAVLDVLLCLANYSQGGDGPMCRPVIL-------LPKDDAPVFLDL 1011
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDI++G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1012 KGSRHPCITKTFFGAEFIPNDIVIGCEEEEEENGNAYCVLVTGPNMGGKSTLMRQAGLLA 1071
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LAQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1072 VLAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVL 1131
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L +++ + V L HMAC
Sbjct: 1132 VDELGRGTATFDGTAIASAVVKELAENIKCRTLFSTHYHSLVDDYSQNVAVRLGHMACMV 1191
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1192 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1245
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 211/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++F+KV
Sbjct: 289 LEWLKEEKRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKV 348
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA G EL G G E + LV +GYKV R+EQ
Sbjct: 349 GKFYELYHMDALTGVNELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 405
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ V+T T + D + +LL++KE
Sbjct: 406 ETPEMMEARCRKMAHICKHDKVVRREICRVITKGTQTYSVLEGDPSENYSKYLLSLKEKE 465
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P +V++E L E +
Sbjct: 466 DDSSGHTRVYGVCFVDASLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTETK 525
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DA++ + + YF +
Sbjct: 526 MILKGSLSSSLQEALIPG---SQFWDAAKTLRTLLEERYFTEKLNEDSGVMLPQVLKGMT 582
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R G
Sbjct: 583 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDLVNATRPG 642
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
+ R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 643 AVFSKASQRMVLDSVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLC 702
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + +A L+KLPDLERLL ++
Sbjct: 703 NPFAINDRLDAIEDLMVVPDKIPELADLLKKLPDLERLLSKI 744
>gi|1817725|gb|AAC53034.1| G/T-mismatch binding protein [Mus musculus]
Length = 1358
Score = 246 bits (627), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP ++LP ++ P L+
Sbjct: 1037 FDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPG--------EDTHPFLE 1088
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
KG HP G +PNDIL+G E + +L+TGPNMGGKSTL+R L
Sbjct: 1089 FKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLL 1148
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQLGC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV
Sbjct: 1149 AVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLV 1208
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC
Sbjct: 1209 LVDELGRGTATFDGTAIASAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACM 1268
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 1269 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 1323
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 213/460 (46%), Gaps = 72/460 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P ++ TLY+P E L + +++W +KSQ D+++F+KV
Sbjct: 369 LEWLKQKKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKV 428
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 429 GKFYELYHMDAVIGVSELG---LIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 485
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 486 ETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKE 545
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P ++++E L E +
Sbjct: 546 EETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETK 605
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG---------------SSS 505
L+ + L P + F DA++ + + GYF G +S
Sbjct: 606 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNGDSSTVLPLVLKGMTSE 662
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPYKV 550
S L + ++ SALGG++ +L + ++D L + + P V
Sbjct: 663 SDSVGLTPGEESELALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAV 722
Query: 551 YRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDV 587
+ + +D TL LD+C T GKRLL+ W+C PL
Sbjct: 723 FTKASQRMVLDAVTLNNLEIFLNGTNGSTEGNLLERLDTCHTPFGKRLLKQWLCAPLCSP 782
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD VE LM V VA L+KLPDLERLL ++
Sbjct: 783 SAISDRLDAVEDLMAVPYKVTEVADLLKKLPDLERLLSKI 822
>gi|26353224|dbj|BAC40242.1| unnamed protein product [Mus musculus]
Length = 1358
Score = 246 bits (627), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP ++LP ++ P L+
Sbjct: 1037 FDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPG--------EDTHPFLE 1088
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
KG HP G +PNDIL+G E + +L+TGPNMGGKSTL+R L
Sbjct: 1089 FKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLL 1148
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQLGC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV
Sbjct: 1149 AVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLV 1208
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC
Sbjct: 1209 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACM 1268
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 1269 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 1323
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 215/460 (46%), Gaps = 72/460 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL P K RD +RRRPD P ++ TLY+P E L + +++W +KSQ D+++F+KV
Sbjct: 369 LEWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKV 428
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 429 GKFYELYHMDAVIGVSELG---LIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 485
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 486 ETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKE 545
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P ++++E L E +
Sbjct: 546 EETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETK 605
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG---------------SSS 505
L+ + L P + F DA++ + + GYF G +S
Sbjct: 606 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNGDSSTVLPLVLKGMTSE 662
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPYKV 550
S L + ++ SALGG++ +L + ++D L + + P V
Sbjct: 663 SDSVGLTPGEESELALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAV 722
Query: 551 YRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDV 587
+ + +D TL LD+C T GKRLL+ W+C PL
Sbjct: 723 FTKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSP 782
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD VE LM + V VA L+KLPDLERLL ++
Sbjct: 783 SAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKI 822
>gi|6754744|ref|NP_034960.1| DNA mismatch repair protein Msh6 [Mus musculus]
gi|341940990|sp|P54276.3|MSH6_MOUSE RecName: Full=DNA mismatch repair protein Msh6; AltName: Full=G/T
mismatch-binding protein; Short=GTBP; Short=GTMBP;
AltName: Full=MutS-alpha 160 kDa subunit; AltName:
Full=p160
gi|2665637|gb|AAB88445.1| mismatch repair protein MSH6 [Mus musculus]
gi|30109297|gb|AAH51160.1| MutS homolog 6 (E. coli) [Mus musculus]
gi|30185718|gb|AAH51634.1| MutS homolog 6 (E. coli) [Mus musculus]
Length = 1358
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP ++LP ++ P L+
Sbjct: 1037 FDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPG--------EDTHPFLE 1088
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
KG HP G +PNDIL+G E + +L+TGPNMGGKSTL+R L
Sbjct: 1089 FKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLL 1148
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQLGC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV
Sbjct: 1149 AVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLV 1208
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC
Sbjct: 1209 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACM 1268
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 1269 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 1323
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 215/460 (46%), Gaps = 72/460 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL P K RD +RRRPD P ++ TLY+P E L + +++W +KSQ D+++F+KV
Sbjct: 369 LEWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKV 428
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 429 GKFYELYHMDAVIGVSELG---LIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 485
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 486 ETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKE 545
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P ++++E L E +
Sbjct: 546 EETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETK 605
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG---------------SSS 505
L+ + L P + F DA++ + + GYF G +S
Sbjct: 606 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNGDSSTVLPLVLKGMTSE 662
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPYKV 550
S L + ++ SALGG++ +L + ++D L + + P V
Sbjct: 663 SDSVGLTPGEESELALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAV 722
Query: 551 YRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDV 587
+ + +D TL LD+C T GKRLL+ W+C PL
Sbjct: 723 FTKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSP 782
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD VE LM + V VA L+KLPDLERLL ++
Sbjct: 783 SAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKI 822
>gi|410954737|ref|XP_003984018.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 2 [Felis catus]
Length = 1228
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 183/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P+ P P L
Sbjct: 907 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILFPEEDTP--------PFLD 958
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
++G HP G +PNDIL+G E+ + +L+TGPNMGGKSTL+R L
Sbjct: 959 LRGSRHPCITKTFFGDDFIPNDILIGCEEEEEESGKAYCVLVTGPNMGGKSTLMRQAGLL 1018
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ GC++P E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1019 AVMAQTGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1078
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1079 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1138
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P+++++ A +K
Sbjct: 1139 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAAKLANLPEEIIQKGHRKAREFEK 1193
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 140/475 (29%), Positives = 216/475 (45%), Gaps = 77/475 (16%)
Query: 224 CEEEADTT----SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWN 279
CE+ + T EWL K RD +RRRPD P +D TLY+P + L + +++W
Sbjct: 224 CEDSSRPTFWYHETLEWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQ 283
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
+KSQ D+++F+KVGKFYELY +DA +G EL G G E +
Sbjct: 284 IKSQNFDLVIFYKVGKFYELYHMDALVGVNELGLVFM---KGNWAHSGFPEIAFGRYSDS 340
Query: 340 LVARGYKVGRIEQLETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-- 389
LV +GYKV R+EQ ET E +AR + V+ R++ V+T T + D
Sbjct: 341 LVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPS 400
Query: 390 ---AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
+ +LL++KE + VYG FVD + + ++G DD C+ L+ P
Sbjct: 401 ENYSKYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFPDDRHCSRFRTLVAHYPPV 460
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF----NG 502
+V++E L E + L+ + S L P + F DA++ + + YF N
Sbjct: 461 QVLFEKGNLSTETKMILKGSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEAYFKEKLND 517
Query: 503 SSSPWSKALENVM------------QHDIGFSALGGLISHLSRLMLDDVL---------- 540
S + L+ + + ++ SALGG + +L + ++D L
Sbjct: 518 SGVMLPQVLKGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYI 577
Query: 541 ----------RNGDILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSG 572
R G + R D + + ++L D+C T G
Sbjct: 578 PLDSDRVSATRPGAVFAKANQRMVLDAVTLSNLEIFLNGTNGSTEGTLLEKIDTCHTPFG 637
Query: 573 KRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
KRLL+ W+C PL IN+RLD +E LM + + VA L+K+PDLERLL ++
Sbjct: 638 KRLLKQWLCAPLCSPYAINDRLDAIEDLMAVPDKISDVADLLKKIPDLERLLSKI 692
>gi|403365718|gb|EJY82649.1| DNA repair protein, putative [Oxytricha trifallax]
Length = 1348
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 192/347 (55%), Gaps = 23/347 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L + F + S W + + ++ +D L S A+ AS M RP L +
Sbjct: 929 LFQRFYDNRSYWDQAVMVMAELDCLTSLAI-ASQHQAPMCRPQFLKYEGRYRKK-----A 982
Query: 790 VLKIKGLWHPFALGENGGLP-------VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
L+++ + HP + VPND L+ + R LL+TGPNMGGKSTLL
Sbjct: 983 YLELRQMRHPCIDLKQAQKSEKQQKKFVPNDTLINNSKSNT--RILLVTGPNMGGKSTLL 1040
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R TCLAVILAQ+GCFVP E C+L+ D IFTR+GA+DRI+ G+STF VE ET ++L+ A
Sbjct: 1041 RQTCLAVILAQIGCFVPAESCILTPVDRIFTRIGASDRILEGKSTFFVEMEETNTILKNA 1100
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SL ILDELGRGTSTFDGY+IA+AV L I CR LF+THYH L +F +
Sbjct: 1101 TFKSLAILDELGRGTSTFDGYSIAHAVLNYLTNYIKCRSLFSTHYHLLLDKFRDVEGIKS 1160
Query: 963 QHMACAFKSNSENYSKGDQELV-FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
HMAC S+ +Q+ + FLY+ G CP+S+G+ VA MAG+P V+ A +
Sbjct: 1161 YHMACK-------QSETEQDRIEFLYKFIEGDCPQSFGMNVAKMAGLPINVIRHAKLKSQ 1213
Query: 1022 AMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYD 1068
K + + +++ ++ H + + S+ ++D YD
Sbjct: 1214 EFSKKMSKMIFANQNQNYNPIQHVNQQQNNIKQSKSHDRDNNDSDYD 1260
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 200/457 (43%), Gaps = 81/457 (17%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
+L IRDA RRP DP YDK TL+IP K+ + QYW +KS+ D ++FFK+GK
Sbjct: 317 FLRKDHIRDAKMRRPSDPNYDKTTLHIPHNEWKQFTQCMVQYWKIKSENFDKIIFFKLGK 376
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ-LE 354
FYE+++ DAEI +K LD I VG E D E LV G V +EQ LE
Sbjct: 377 FYEIFDYDAEICNKLLD--INFMNNQNRMHVGFPEKNKDKYAEVLVQNGLTVMVVEQMLE 434
Query: 355 TSEQA------KARHTN-------SVISRKLVNVVTPSTTVDGTIGP-DAVHLLAIKEGN 400
QA K H N ++R + + + T D D+ ++LA+K N
Sbjct: 435 NKNQAPNKVLNKNYHQNPYKKYEKECVTRDICQIYSRGTFTDIERAQYDSKYVLALKIDN 494
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
V G + D + + ++G DD S L +L Q+ EVI E +GL +
Sbjct: 495 -------VNIGLCYFDVSTNKCFLGQFEDDESFNTLRTILAQIRAVEVIAE-KGLINQQI 546
Query: 461 KALRKFSAGSAALEL-------TPAMAVTDF----------LDASEV-KKLVQLNGYFNG 502
+ + K S S L T VT F +D EV KKL Q +
Sbjct: 547 EKMIKSSPQSPILHQYRQDQCPTALRTVTTFEKYIQEEKKSIDDFEVLKKLRQDSKIL-- 604
Query: 503 SSSPWSKALENVMQHDIGFSALGGL---------ISHLSRLMLDD--VLRNGDILP---- 547
+ + A++ + H + S L + + + M+ D + +++P
Sbjct: 605 ALQAFGIAIKFLENHLLATSCLKLFRYQLFEPKSMEYSAEFMILDSAAIEQLELIPVEST 664
Query: 548 --------YKVYRDCLRMDGQTL-------------YLDSCVTSSGKRLLRSWICHPLKD 586
++ + L+ D Q + +++ T G RLL+ W+ PL D
Sbjct: 665 TQLQIEKKFERFNPNLQKDQQVILQKPNTSQATLFDFINHTKTDFGNRLLKKWLLAPLMD 724
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
++ IN+RLD +E L++++ + + K+PDL+ L
Sbjct: 725 IDKINDRLDAIEDLIQDTTYLHEFRDNISKMPDLDSL 761
>gi|398409676|ref|XP_003856303.1| hypothetical protein MYCGRDRAFT_98500 [Zymoseptoria tritici IPO323]
gi|339476188|gb|EGP91279.1| hypothetical protein MYCGRDRAFT_98500 [Zymoseptoria tritici IPO323]
Length = 1199
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 167/528 (31%), Positives = 258/528 (48%), Gaps = 57/528 (10%)
Query: 228 ADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDV 287
+D + ++ WL + + DA+R D YD RT+YIPP A K SA +KQYW +K +MD
Sbjct: 267 SDPSDRYTWL--ATVLDADRNPTDHADYDPRTIYIPPMAWNKFSAFEKQYWEIKQNFMDT 324
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347
++FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D + VA+G+K+
Sbjct: 325 IVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEASLDHWANQFVAKGFKI 382
Query: 348 GRIEQLETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIK 397
R++Q+E+ + + + +I R+L V+T T VDG + D A + AIK
Sbjct: 383 ARVDQMESKLSKDMRERDGGGGKKEDKIIRRELAAVLTGGTLVDGGMLQDDMATYCAAIK 442
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
E +G +G AFVD A + + DD + Q+ P E++ E +
Sbjct: 443 ETEV---DGMPKFGIAFVDTATAQFQLSEFVDDIDMTRFETFVAQIRPGEILLEKGCVSA 499
Query: 458 EAQKALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFNGS----SSPWSKALE 512
+A + L+ + + L P +FL A + + + GYF S + W KAL
Sbjct: 500 KALRILKNNTPVTTIWNHLKPD---KEFLTADKTRMKINGEGYFEKSEDEAADAWPKALR 556
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQTL------- 562
+ ++ F ALG LI +LS L ++ D+L G+ Y+ R L +DGQ+L
Sbjct: 557 EASEKEVAFPALGALIWYLSMLKIERDLLTCGNFAWYEPIRKSSSLVLDGQSLINLEIFA 616
Query: 563 -------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
L+ CVT GKR+LR W+CHPL D IN R D V+ L + V+
Sbjct: 617 NTFDGSAEGTLFSMLNRCVTPFGKRMLRQWVCHPLGDARKINLRFDAVDALNADGTVMDR 676
Query: 610 VAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLM 669
L +LPDLERL+ R+ A + L G + ++ + + GS G + L++
Sbjct: 677 FTSSLSRLPDLERLISRIHAGRCRPQDFLKVLEGFEQIEYTMSILGSFGDGDGLLGQLIV 736
Query: 670 LMHKEGHIIPSLSRIFK--PPIFDGSDGLDKFLTQFEAAIDSDFPDYQ 715
M P+L+ + FD + D+ L + ++ DF + Q
Sbjct: 737 AM-------PNLAGALEHWKDAFDRTKAKDEGLFIPQPGVEEDFDESQ 777
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 156/280 (55%), Gaps = 21/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I+ +D L S A T++ RP V +N VL+ K L HP
Sbjct: 882 WLAALKVIAQLDCLISLAKTSASLGSPSCRPTF--------VEDENAKGVLEFKTLRHPC 933
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
E +PNDI LG D+ LLTG N GKST+LR TC+AVILAQ+GC+VPC
Sbjct: 934 I--ETTTNFIPNDIALGGDA----ASINLLTGANAAGKSTVLRMTCIAVILAQVGCYVPC 987
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
E ++ D I +RLGA D I G+STF+VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 988 ESARMTPVDRIMSRLGAHDNIFAGQSTFMVELSETKKILSEATPRSLVILDELGRGTSSY 1047
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A +V + + FATHYH L EF SHP + + MA + +
Sbjct: 1048 DGVAVAQSVLHHIATHVGSLGYFATHYHSLAAEFQSHPEIAAKRMAVRVEHDI------- 1100
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+++ FLY+L G SYG+ A M G+ K+++ A AA
Sbjct: 1101 RDVTFLYQLEDGVAEGSYGMHCAAMCGISDKIIDRAEQAA 1140
>gi|148706690|gb|EDL38637.1| mCG15886 [Mus musculus]
Length = 1379
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP ++LP ++ P L+
Sbjct: 1058 FDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPG--------EDTHPFLE 1109
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
KG HP G +PNDIL+G E + +L+TGPNMGGKSTL+R L
Sbjct: 1110 FKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLL 1169
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQLGC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV
Sbjct: 1170 AVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLV 1229
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC
Sbjct: 1230 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACM 1289
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 1290 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 1344
Score = 213 bits (541), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 215/460 (46%), Gaps = 72/460 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL P K RD +RRRPD P ++ TLY+P E L + +++W +KSQ D+++F+KV
Sbjct: 390 LEWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKV 449
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 450 GKFYELYHMDAVIGVSELG---LIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 506
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 507 ETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKE 566
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P ++++E L E +
Sbjct: 567 EETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETK 626
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG---------------SSS 505
L+ + L P + F DA++ + + GYF G +S
Sbjct: 627 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNGDSSTVLPLVLKGMTSE 683
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPYKV 550
S L + ++ SALGG++ +L + ++D L + + P V
Sbjct: 684 SDSVGLTPGEESELALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAV 743
Query: 551 YRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDV 587
+ + +D TL LD+C T GKRLL+ W+C PL
Sbjct: 744 FTKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSP 803
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD VE LM + V VA L+KLPDLERLL ++
Sbjct: 804 SAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKI 843
>gi|351706766|gb|EHB09685.1| DNA mismatch repair protein Msh3, partial [Heterocephalus glaber]
Length = 1071
Score = 245 bits (626), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 267/913 (29%), Positives = 393/913 (43%), Gaps = 163/913 (17%)
Query: 264 PEALKKMSAS-----QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS 318
P AL K S S + QY VK Q+ D +L + G Y + DAEI +EL+ L
Sbjct: 149 PRALNKRSKSVYTPLELQYLEVKQQHPDAVLCVECGYKYRFFGEDAEIAARELNIYCHLD 208
Query: 319 GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVT 377
I + V +LVA+GYKVG ++Q ET+ +A +S +RKL + T
Sbjct: 209 --HSFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDSRSSPFARKLTALYT 266
Query: 378 PSTTV----------------DGTIGPDAV-------HLLAI---KEGNCGPDNGSVVYG 411
ST + DG +G D V +LL I K+ G GSV G
Sbjct: 267 KSTLIGEDILSEWNFSLIKLDDGAVGVDEVTTDASAGYLLCICEDKDSAKGKRKGSVFIG 326
Query: 412 FAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR------------GLCKEA 459
V A + + D A L L + E++ R LC
Sbjct: 327 VVAVQPATGELLLDAFQDTALRLELETRLCSLQLAELLLPERLSEWSHPTVSHPVLCHLR 386
Query: 460 QKALRKFSAGSAALELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSSPW 507
+R + E + A VT+F D +V+ +G N + +
Sbjct: 387 DDRIRVERMDNVYFEYSHAFQVVTEFYTKDPVDVRGSQSFSGIINLEKPVICCLAAIIRY 446
Query: 508 SKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-L 564
K LE ++ F L + ++ M LRN +IL + + G L+ L
Sbjct: 447 LKEFNLEKILSKPENFKQLSSEMELMT--MNGTTLRNLEILQNQTDG---KSKGSLLWVL 501
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRL-DVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
D T+ G+RLLR W+ HPL + IN RL V E L S V + L+KLPD+ER
Sbjct: 502 DHTHTAFGRRLLRKWVTHPLLRLSEINARLCAVSEVLGSESSVFAQIESLLQKLPDMERG 561
Query: 624 LGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSR 683
LG + R ++ L + LK +++V +V + DLL ++ E IP L
Sbjct: 562 LGSIYHRKCSTQEFFLIVRTLCHLKSELQVLMPVVNS-HVQSDLLRMIVLE---IPELLS 617
Query: 684 IFKPPIFDGSDGLDKFLTQFEAAID-SDFP--DYQNHDVTDLDAETLSILIE---LFIEK 737
+ + S+ K + E D SDFP + ++ D+ A+ + L E +
Sbjct: 618 PVEHYLKILSEQAAKIGDKTELFKDLSDFPLIKKRKDEIQDVTAKIQTHLQEIRKILKNP 677
Query: 738 ASQWSEVI----------HAISCI--DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
++Q+ V A+SCI D ++ V ++ + H PL++ + ++Q
Sbjct: 678 SAQYVTVSGQEFMIEVKNSAVSCIPPDWVK---VGSTKAVSRFHSPLVVESYR--LLQQL 732
Query: 786 NGGPVLKIKGLWHPF--ALGE--------------------------------------- 804
VL W F + GE
Sbjct: 733 REQLVLDCNAEWLRFLESFGEHYHSLCKAVRHLATIDCIFSLAKVAKQGDYCRPMVKEER 792
Query: 805 -----NGGLPVPNDILLGEDSDDCLP----------RTLLLTGPNMGGKSTLLRATCLAV 849
NG PV D+LLGE D +P R +++TGPNMGGKS+ ++ L
Sbjct: 793 KIIIKNGRHPVI-DVLLGEQ-DQYVPNSTRLSEDSERVMIVTGPNMGGKSSYIKQVALIT 850
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+G +VP E + + D I+TR+GA D I G STF+ E T+TA +++KAT SLVI
Sbjct: 851 LMAQVGSYVPAEEATVGIVDGIYTRMGAADSIYQGRSTFMEELTDTAEIIRKATPRSLVI 910
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMACA 968
LDELGRGTST DG AIAYA + I LF THY PL + S+P V HM
Sbjct: 911 LDELGRGTSTHDGIAIAYATLEYFIRDIKSLTLFVTHYPPLCELERSYPGQVGNYHMGFL 970
Query: 969 FKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA---- 1020
+ G +E + FLY++T G SYGL VA +A VP +V++ A+H +
Sbjct: 971 VTKDEGQAGPGKEEVPDFVTFLYQITRGVAARSYGLNVAKLADVPGEVLKKAAHKSKELE 1030
Query: 1021 --LAMKKSIGESF 1031
+ MK+ +SF
Sbjct: 1031 GLINMKRKRLKSF 1043
>gi|410954735|ref|XP_003984017.1| PREDICTED: DNA mismatch repair protein Msh6 isoform 1 [Felis catus]
Length = 1359
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 183/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P+ P P L
Sbjct: 1038 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILFPEEDTP--------PFLD 1089
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
++G HP G +PNDIL+G E+ + +L+TGPNMGGKSTL+R L
Sbjct: 1090 LRGSRHPCITKTFFGDDFIPNDILIGCEEEEEESGKAYCVLVTGPNMGGKSTLMRQAGLL 1149
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ GC++P E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 1150 AVMAQTGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLV 1209
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1210 LVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACM 1269
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P+++++ A +K
Sbjct: 1270 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAAKLANLPEEIIQKGHRKAREFEK 1324
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 214/475 (45%), Gaps = 77/475 (16%)
Query: 224 CEEEADTT----SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWN 279
CE+ + T EWL K RD +RRRPD P +D TLY+P + L + +++W
Sbjct: 355 CEDSSRPTFWYHETLEWLKEEKRRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQ 414
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
+KSQ D+++F+KVGKFYELY +DA +G EL G G E +
Sbjct: 415 IKSQNFDLVIFYKVGKFYELYHMDALVGVNELGLVFM---KGNWAHSGFPEIAFGRYSDS 471
Query: 340 LVARGYKVGRIEQLETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-- 389
LV +GYKV R+EQ ET E +AR + V+ R++ V+T T + D
Sbjct: 472 LVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPS 531
Query: 390 ---AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
+ +LL++KE + VYG FVD + + ++G DD C+ L+ P
Sbjct: 532 ENYSKYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFPDDRHCSRFRTLVAHYPPV 591
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+V++E L E + L+ + S L P + F DA++ + + YF +
Sbjct: 592 QVLFEKGNLSTETKMILKGSLSSSLQEGLIPG---SQFWDAAKTLRTLLEEAYFKEKLND 648
Query: 507 WSKALENVM----------------QHDIGFSALGGLISHLSRLMLDDVL---------- 540
L V+ + ++ SALGG + +L + ++D L
Sbjct: 649 SGVMLPQVLKGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYI 708
Query: 541 ----------RNGDILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSG 572
R G + R D + + ++L D+C T G
Sbjct: 709 PLDSDRVSATRPGAVFAKANQRMVLDAVTLSNLEIFLNGTNGSTEGTLLEKIDTCHTPFG 768
Query: 573 KRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
KRLL+ W+C PL IN+RLD +E LM + + VA L+K+PDLERLL ++
Sbjct: 769 KRLLKQWLCAPLCSPYAINDRLDAIEDLMAVPDKISDVADLLKKIPDLERLLSKI 823
>gi|167758190|ref|ZP_02430317.1| hypothetical protein CLOSCI_00528 [Clostridium scindens ATCC 35704]
gi|167664087|gb|EDS08217.1| DNA mismatch repair protein MutS [Clostridium scindens ATCC 35704]
Length = 876
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 257/921 (27%), Positives = 403/921 (43%), Gaps = 161/921 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY K +Y D +LF+++G FYE++ DA KEL+ +T G + G+
Sbjct: 3 QQYMQTKKEYPDCILFYRLGDFYEMFFDDALTASKELEITLTGKNCGLKERAPMCGVPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D + +LV++GYKV EQ+E AK ++ R +V +VTP T +D T D
Sbjct: 63 AVDGYLNRLVSKGYKVAICEQMEDPATAKG-----LVKRDVVRIVTPGTNLD-TQSLDET 116
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
I D YG + D +V ++D L + + P E+I
Sbjct: 117 KNNYIMCVVYIADR----YGLSVADVTTGDYFVTELDDSEK---LFDEIYKFMPSELI-- 167
Query: 452 NRGLCKEAQKALRKFSAGSAALELTP-AMAVTDF-LDASEVKKLV---QLNGYFNGSSSP 506
C EA F L+L + +T + LDA + L +F+ S+
Sbjct: 168 ----CNEA------FYMSGMDLDLMKEKLGITIYSLDAWYFDDAICQRTLKEHFHVSTME 217
Query: 507 WSKALENVMQHDIGFSALGGLI-----------SHLSRL--------MLDDVLRNGDILP 547
+ +D G A G L+ SH++RL ML D ++
Sbjct: 218 GL----GLSDYDCGIIAAGALLQYLIETQKRDLSHITRLSAYATGKYMLLDSSTRRNLEL 273
Query: 548 YKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+ R+ + LD T+ G R LR +I PL D I RLD V+ L +N+
Sbjct: 274 CETLREKHKRGSLLWVLDKTKTAMGARCLRKFIEQPLIDKNSIERRLDAVDELKQNAISR 333
Query: 608 MVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ +YL + DLERL+ ++ + SS +LP I + + + + L +
Sbjct: 334 EEIREYLTPVYDLERLVCKITYQSANPRDLIAFKSSLSMLPHIKYILEEMKSPLLKDLYE 393
Query: 660 GLRIAMDLLMLMH-----------KEGHII-----PSLSRIFKPPIFDGSDGLDKFLTQ- 702
L DL L+ KEG II + R+ + DG D L K T
Sbjct: 394 RLDTLEDLCHLVEEAIKEDPPLAMKEGGIIRDGYNEEVDRL-RSAKSDGKDWLAKLETDE 452
Query: 703 ------------------FEAAIDSDF----PDYQNHDVTDLDAETLSI-----LIELFI 735
+ + + F PDY T +AE I L + +
Sbjct: 453 REKTGIKNLKIRYNKVFGYYLEVTNSFKHMVPDYYTRKQTLANAERYIIPELKELEDTIL 512
Query: 736 EKASQWSEVIHAISC-------IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR-QDNG 787
+ + + + C +VLR +++ + L ++ VR + N
Sbjct: 513 GAEDKLYALEYQLYCEARDKIAKEVLRIQTTAKAIAQLDAFASMALVAEQSRYVRPKINE 572
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKSTLLRAT 845
V+ IK HP +PND+ + D+ +D R ++TGPNM GKST +R T
Sbjct: 573 KGVIDIKDGRHPVVEK-----MIPNDMFISNDTYLNDKKNRISIITGPNMAGKSTYMRQT 627
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L V++AQ+G FVP + L D IFTR+GA+D + +G+STF+VE TE A++L+ AT
Sbjct: 628 ALIVLMAQIGSFVPAASADIGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSK 687
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQ 963
SL+ILDE+GRGTSTFDG +IA+AV + + + LFATHYH LT+ +V
Sbjct: 688 SLLILDEIGRGTSTFDGLSIAWAVIEHISSSRLLGAKTLFATHYHELTELEGKIDNVNNY 747
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ-------KVVEAA 1016
+A KGD +++FL ++ G +SYG+QVA +AGVP+ ++VE
Sbjct: 748 CIAVK--------EKGD-DIIFLRKIVKGGADKSYGIQVARLAGVPESVTSRAREIVEEL 798
Query: 1017 SHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDD------------ 1064
HA + + I + ++ + H + + + +S D DDD
Sbjct: 799 VHADITTR--IKDIAVHGQEPPRLKARHYDEVD-LAQMSLFDTVKDDDVIEEIKSLDVSN 855
Query: 1065 ----DAYDTLFCLWHELKNSY 1081
DA +TL+ L ++LKN +
Sbjct: 856 LTPIDALNTLYQLQNKLKNRW 876
>gi|390334252|ref|XP_797647.3| PREDICTED: DNA mismatch repair protein Msh6-like [Strongylocentrotus
purpuratus]
Length = 1462
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 192/332 (57%), Gaps = 27/332 (8%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVR 783
+++ + F E W I +S +DVL A + G M RP ++LP
Sbjct: 1127 DSMRRVFHKFDEHYKSWDAAIQCLSVLDVLMCLAEYSQSGEGNMCRPDIVLPS------- 1179
Query: 784 QDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLG---------EDSDDCLPRTLLLTGP 833
+N P + I HP A GG +PND +G D + +L+TGP
Sbjct: 1180 -ENEQPYIAIVEGRHPCIAHTFAGGDYIPNDTFIGIVNENEMDEGDGNHGNSSCILVTGP 1238
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NMGGKSTL+R L +++AQLGC+VP E C L+ D +FTRLGA D I++GESTF VE +
Sbjct: 1239 NMGGKSTLMRQAGLIIVMAQLGCYVPAEGCRLTPVDRVFTRLGARDNILSGESTFFVELS 1298
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953
ETAS+L+ A++ SLV++DELGRGT+T+DG AIA AV ++L E + CR LF+THYH L +E
Sbjct: 1299 ETASILKHASKHSLVLVDELGRGTATYDGTAIATAVVKELSEVVGCRTLFSTHYHSLVEE 1358
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
F+ P++ L HMAC ++ +E + + FLY+ GACP+SYG A +A +P +++
Sbjct: 1359 FSHDPNIRLGHMACMVENENEE-DPSQETITFLYKFVGGACPKSYGFNAARLADIPDEII 1417
Query: 1014 EAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
A A + +S+E+ F S+H+
Sbjct: 1418 LVARQKAKHFE-------ESAERMKFFRSVHK 1442
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/434 (27%), Positives = 195/434 (44%), Gaps = 68/434 (15%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EWL P K +D R DP YD TL++P + K + + +Q+W +KS+Y + +LFFK+G
Sbjct: 409 EWLKPGKRKDIKGRPEQDPEYDSSTLFVPKSFMDKTTPAMRQWWEMKSKYYNAVLFFKMG 468
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYELY +DAE+ KEL C G E E L+ +GY++ R+EQ E
Sbjct: 469 KFYELYHMDAEVAVKELGLIFMKGENAHC---GFPEIAFSRYSETLIQKGYRIARVEQTE 525
Query: 355 TSE--QAKARHT-------NSVISRKLVNVVTPSTT----VDG-TIGPDAVHLLAIKEGN 400
T + Q + +H + V+ R++ + T +T +DG T + +LLA+ E
Sbjct: 526 TPDMMQERVKHLSRAVTKFDKVVKREICRISTQATRTFSFIDGDTCEAQSSYLLAVTERP 585
Query: 401 C-GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
C G G VYG V+ + + ++G DD + L+ P +V++E L +
Sbjct: 586 CEGSSGGESVYGVCIVETSIGKFYIGQFQDDRHSSRFRTLIAHYPPAQVLFERGKLLPKT 645
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF--------------NGSSS 505
Q+ L L P ++F DAS+ K + GYF G S
Sbjct: 646 QQLLSNNLVSVLKDSLLPG---SEFWDASKTLKALMEKGYFEDSERDKDGQENGGKGGLS 702
Query: 506 PWSKALENVMQH------------DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
W L+ ++ ++ SALG +L + L+ L + + ++VY+
Sbjct: 703 CWPDELKEMLSDADSLGLTPKDGCEMALSALGACTWYLKKCCLEQELLS--MRNFEVYK- 759
Query: 554 CLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L +++ SS PL + + V L N ++V V +
Sbjct: 760 -------PLDVEASKPSS-----------PLPSFTSKQHMVRDVLDLHSNPDIVAEVVEL 801
Query: 614 LRKLPDLERLLGRV 627
++KLPDLERLL ++
Sbjct: 802 IKKLPDLERLLSKI 815
>gi|298710503|emb|CBJ25567.1| MutS protein homolog 6 [Ectocarpus siliculosus]
Length = 1372
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 177/303 (58%), Gaps = 22/303 (7%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
D + + L F E W+ + +S +D + S A ++ RP + P
Sbjct: 1023 DAQRDQMRGLFAKFDEHRELWASTVRCLSHLDAVLSLAEVSAQP--GFSRPRFHDGASTP 1080
Query: 781 AVRQDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLGED----SDDC--LPRTLLLTGP 833
+ +++K HP A GG +PND LG SDD P LLLTGP
Sbjct: 1081 SF--------IRLKNARHPCLAQTYQGGEYIPNDATLGAAPAGISDDAPAAPNMLLLTGP 1132
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NMGGKSTLLR TCL ILAQ+GCFVP + L+ D IFTR+GA+DRI+ G+STF +E +
Sbjct: 1133 NMGGKSTLLRQTCLVAILAQVGCFVPADEAHLTPLDRIFTRVGASDRILAGQSTFFLELS 1192
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953
ETA++L AT SLVILDELGRGTSTFDG AIA+AV LV+ C +FATHYH L ++
Sbjct: 1193 ETANILHHATSRSLVILDELGRGTSTFDGTAIAHAVAHYLVKSAKCLAMFATHYHSLVED 1252
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+ H V L HM+C + N G+Q + FLY+L G CP+S+G+ VA +A +P V+
Sbjct: 1253 WGHHSEVALGHMSCLVEDNG-----GEQRVTFLYKLAPGPCPKSFGINVARLAQLPDAVI 1307
Query: 1014 EAA 1016
AA
Sbjct: 1308 SAA 1310
Score = 159 bits (403), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 174/364 (47%), Gaps = 66/364 (18%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
F+WL +++ DANRRRPDDPLY+ RTLY+PP L K + + Q+W KSQ MD +LFFKV
Sbjct: 310 FDWLYKNRV-DANRRRPDDPLYNPRTLYVPPSFLSKETPAMVQWWKFKSQNMDTVLFFKV 368
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYEL+ +DA++G +ELD + G+ G E + LV++GY+V R+EQ+
Sbjct: 369 GKFYELFHVDADVGMQELD---LIYMKGEKAHSGFPEISYGKFADGLVSKGYRVARVEQV 425
Query: 354 ETSEQAKARHT--------NSVISRKLVNVVTP-----------STTVDGTIGPDAVHL- 393
ET + KAR+ + V+ R+L ++++ S+T DG+ P +V++
Sbjct: 426 ETPDMLKARNASVGRNGTKDKVVKRELCSILSRGTRTYCFLDDVSSTPDGS--PRSVNMI 483
Query: 394 LAIKEGNC-----------------GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
L+IKE GP YG VD +G DD + + L
Sbjct: 484 LSIKETAVDALSEFDPGSPGSADADGPPAAVCEYGVCMVDATTATFSLGQFADDPARSRL 543
Query: 437 GALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL 496
LL Q P E++ E L + ++ + ++ + L T+F DAS + ++
Sbjct: 544 RTLLAQQLPVEIVMEKDNLSETTLHMIKCMAPLASHMTLHKG---TEFWDASRTVQELKN 600
Query: 497 NGYFNGSSSP----------------WSKALENVMQHD----IGFSALGGLISHLSRLML 536
YF S+ W L V++ + SALGG H R ++
Sbjct: 601 RRYFRNESNAKEKSSAGDGKGSNVEDWPPILRAVVEGGKDGALALSALGGATWHTRRALI 660
Query: 537 DDVL 540
D L
Sbjct: 661 DHDL 664
Score = 53.1 bits (126), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN-SEVVMVVAQYLRKLPDLE 621
+++ C T+ G+RLL+ W+ PL IN RLD V L + S L+KLPD+E
Sbjct: 746 FVNRCSTAFGRRLLKDWVLKPLLFPTHINGRLDAVSELAGDLSPEADASRALLKKLPDVE 805
Query: 622 RLLGRV 627
RLL RV
Sbjct: 806 RLLSRV 811
>gi|223998298|ref|XP_002288822.1| MutS family [Thalassiosira pseudonana CCMP1335]
gi|220975930|gb|EED94258.1| MutS family [Thalassiosira pseudonana CCMP1335]
Length = 1099
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 184/312 (58%), Gaps = 24/312 (7%)
Query: 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLI---LPQSKNP 780
A + ++ F + W HA + +D L + A A M RP I LP +K
Sbjct: 801 ASGMKLVFAKFDSMRNVWMAATHATAMLDALGALAEVAVMP--GFSRPQIVDCLPNTK-- 856
Query: 781 AVRQDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLG-------EDSDDCLPRTLLLTG 832
P +K+ HP + +G +PND+ LG DS+D LLL+G
Sbjct: 857 --------PGIKVVQGRHPCVGITHSGDDFIPNDLTLGGKMGLDENDSND-ESSVLLLSG 907
Query: 833 PNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVEC 892
PNMGGKSTLLR TCL ILAQ+G FVP E C L+ D IFTRLGA+DRI+ G+STF VE
Sbjct: 908 PNMGGKSTLLRQTCLITILAQIGSFVPAEQCALTPVDRIFTRLGASDRILCGQSTFFVEL 967
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952
ETA+ ++ AT+ SLVI+DELGRGTSTFDG AIA A + LVER C LFATHYH L +
Sbjct: 968 AETAAAVRGATRRSLVIMDELGRGTSTFDGTAIASATVKHLVERSQCVTLFATHYHSLLE 1027
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
++ + P + L HM C + +SE+ ++ + FLY L G CP+S+G+ VA +AG+P V
Sbjct: 1028 DWKNEPSIRLGHMECIVEDDSEDDAEKRSNITFLYTLGEGPCPKSFGVNVARLAGLPDDV 1087
Query: 1013 VEAASHAALAMK 1024
++ A + A +
Sbjct: 1088 LQKAKLVSAAFE 1099
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 144/548 (26%), Positives = 219/548 (39%), Gaps = 120/548 (21%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEALKK--------MSASQKQYWNVKSQYMDVLLFFKVG 294
RD N+ P+ P Y RTL + L++ +S +Q+Q+W++K Y D +L FK G
Sbjct: 127 RDMNKHAPNHPDYSPRTLLVDYNELERKHKEIGGTLSPAQRQWWDIKCHYADTVLLFKTG 186
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYE++ DA++G LD+ G G E+ D V LV +GYKV R+EQ E
Sbjct: 187 KFYEMFHDDADVGVAHLDFNYM---SGTAAHAGFPEAAYDKFVGILVEKGYKVARVEQTE 243
Query: 355 TSEQAKARHTN------SVISRKLVNVVTPSTTV-----------DG-----TIGPDAVH 392
T + R SV++R++ VV+ T +G T GP V
Sbjct: 244 TPDMLNERKKRTSGKKPSVVNREVCCVVSKGTRTFCYLEDTSCFEEGSEKKVTTGPLVV- 302
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE- 451
+ ++E + YG VD V +G DD + + LL SP EV+ E
Sbjct: 303 IKEVEEEDVAGTKAVCEYGVTVVDAITGVVTLGQFADDILRSRMQTLLASYSPSEVLIEG 362
Query: 452 -------NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504
+ L EA+K L + ++P DA + K + Y+ SS
Sbjct: 363 GAKNFPKSNALDSEARKVLNR-----TQQNISP-------WDAEDGVKELHRRAYYPRSS 410
Query: 505 SP--------------WSKALENVMQ--HDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
W + L + + S+ G + +L R ++D ++L G +
Sbjct: 411 RKNDPSAGGVGGGIGRWPEVLRACVDGGASLALSSFGAALFYLQRSLVDAEILSMGIVKA 470
Query: 548 Y------------KVYRDCLRMDGQTL--------------------YLDSCVTSSGKRL 575
Y + D + +DG TL +D + G RL
Sbjct: 471 YIPPNNGLSPTESEALCDHMALDGTTLSNLEILNNLASGSYQGSLLSKIDVTQSPHGSRL 530
Query: 576 LRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLPDLERLLGRVKARVQA 633
LR+W+ PL I+ R DVVE L S V + L+K D+ERLL RV + Q
Sbjct: 531 LRAWLLRPLFRKVDIDRRADVVEELSGGSAAVSMSEARPLLKKTGDIERLLSRVHSMGQG 590
Query: 634 SSCIV---LPLIG------------KKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII 678
P G +K K++V F L+ GLR A ++ L
Sbjct: 591 GGARADGEGPPTGYHPDERAILYENEKHTKRKVGDFSKLLTGLRNAAEIPELFDNAEIQS 650
Query: 679 PSLSRIFK 686
P L++I +
Sbjct: 651 PMLAKIVR 658
>gi|389641339|ref|XP_003718302.1| DNA mismatch repair protein msh6 [Magnaporthe oryzae 70-15]
gi|351640855|gb|EHA48718.1| DNA mismatch repair protein msh6 [Magnaporthe oryzae 70-15]
gi|440466802|gb|ELQ36046.1| DNA mismatch repair protein msh6 [Magnaporthe oryzae Y34]
gi|440480286|gb|ELQ60960.1| DNA mismatch repair protein msh6 [Magnaporthe oryzae P131]
Length = 1218
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 265/532 (49%), Gaps = 61/532 (11%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
K C++E + ++ WL +KI+D +R PD P +DK T++IPP A K S +KQYW +K
Sbjct: 283 KACKKEPE--DRYPWL--AKIQDMDRHSPDHPDFDKSTIFIPPMAWNKFSPFEKQYWEIK 338
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
+ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D V + V
Sbjct: 339 QKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEASLDIWVNQFV 396
Query: 342 ARGYKVGRIEQLETS---------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--A 390
A+GYKV R++Q+E++ K + + +I R+L ++T T V+G++ D A
Sbjct: 397 AKGYKVARVDQMESALGKEMRERGGDKKNKKEDKIIRRELACILTGGTLVEGSMLQDDMA 456
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+AIKE N +G AFVD A + ++ DD + Q SP+E++
Sbjct: 457 TFCVAIKESTI---NNHPAFGIAFVDAATGQFFISQFEDDVDLTKFETFVAQTSPRELLL 513
Query: 451 ENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFN-----GSS 504
E + +A + L+ ++ + L P ++FLD ++ + YF +
Sbjct: 514 EKSNISTKALRILKNNTSPTTIWNYLKPD---SEFLDPETTRRELSCGDYFKVADGGDET 570
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQT 561
W +AL+ D+ SA+G L+ +L L L+ +L G+ Y ++RD L +DGQ+
Sbjct: 571 EVWPEALDKSRDKDLLMSAMGALVHYLRVLKLERSLLSQGNFEWYNPIHRDGTLVLDGQS 630
Query: 562 L--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
L L+ C+T GKRL R W+CHPL +++ IN RLD V+ L
Sbjct: 631 LINLEVFSNSVNGGPEGTLFNLLNRCITPFGKRLFRQWVCHPLCNIKKINERLDAVDMLN 690
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL 661
+ ++ + + K+PDLERL+ R+ A V + V L G + ++ + + + G
Sbjct: 691 ADRSILEQFSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEGFEQIEYAMSMLSAFGGGN 750
Query: 662 RIAMDLL--MLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
+ L+ ML KE F FD D+ L E I+ DF
Sbjct: 751 GLVDRLISSMLDLKE-------PLTFWKSAFDRKKVRDEKLLIPERGIEEDF 795
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 148/280 (52%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I IS +D L A +S RP + D+ V++ + L HP
Sbjct: 902 WIQAIRIISQLDCLICLAKASSSLGEPSCRPTFV----------DHERSVVEFEELRHPC 951
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L +PNDI LG D + LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 952 MLNTVDDF-IPNDIKLGGDDANIN----LLTGANAAGKSTVLRMSCIAVIMAQIGCYVPA 1006
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1007 VSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1066
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF +HP + + M
Sbjct: 1067 DGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKRMQI-------QVDDAK 1119
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLYRL G S+G+ A M G+ +V+E A AA
Sbjct: 1120 RRVTFLYRLEDGVAEGSFGMHCAAMCGISDRVIERAEVAA 1159
>gi|225437545|ref|XP_002275930.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Vitis vinifera]
Length = 1297
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 182/313 (58%), Gaps = 19/313 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI F E +W +++ + + +DVL S A+ G RP+I + N
Sbjct: 942 LQRLISRFCEHHDKWRQLVSSTAELDVLISLAIANDYYEGPTCRPVI------SGLSNSN 995
Query: 787 GGPVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
P K L HP +LG+ G VPNDI +G C +LLTGPNMGGKSTLL
Sbjct: 996 EVPCFTAKSLGHPVLRSDSLGK--GTFVPNDITIGGSDHACF---ILLTGPNMGGKSTLL 1050
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLAVILAQ+G VP E LS D IF R+GA D IM G+STFL E +ETAS+L A
Sbjct: 1051 RQVCLAVILAQVGADVPAESFELSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLTSA 1110
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T +SLV LDELGRGTST DG AIA +V V ++ CR +F+THYH L ++ + V+L
Sbjct: 1111 TCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVRCRGMFSTHYHRLAVDYKKNSKVSL 1170
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HMAC G +E+ FLYRL GACP+SYG+ VA +AG+P V++ A+ +
Sbjct: 1171 CHMACQVGKG----VGGVEEVTFLYRLRPGACPKSYGVNVARLAGLPNSVLQKAAAKSRE 1226
Query: 1023 MKKSIGESFKSSE 1035
++ G K S+
Sbjct: 1227 IEGIYGRHRKGSD 1239
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 169/574 (29%), Positives = 272/574 (47%), Gaps = 94/574 (16%)
Query: 173 GPDTPGMHRVVPRLKRIL-EDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEE---- 227
GP +V P+ ++ + E + G ++ SS +++ SV +KN E
Sbjct: 220 GPKKGQSKKVDPKKRKAVGEGTMGSGKRRKSS--GGAEKNTFKVSSVEPMKNAESRKASD 277
Query: 228 -------ADTTSKFEWLDPSKI-------RDANRRRPDDPLYDKRTLYIPPEALKKMSAS 273
D +F + K+ +DA RR P D YD RTLY+PP LK ++
Sbjct: 278 ILDNVLPGDALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGG 337
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI 333
Q+Q+W KS++MD ++FFK+GKFYEL+E+DA IG KELD + G C G E
Sbjct: 338 QRQWWEFKSRHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKGGQPHC---GFPEKNF 394
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGTI-- 386
VEKL +GY+V +EQ ET EQ + R + V+ R++ VVT T +G +
Sbjct: 395 SINVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLS 454
Query: 387 -GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
PDA +L+A+ E +C + S +G VD A R+ +G DD+ C+ L LL ++ P
Sbjct: 455 ANPDASYLMAVTE-SCQFEERS--FGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRP 511
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA----SEVKKL------VQ 495
E+I L E ++AL + + EL P +++F D+ SE++ + +
Sbjct: 512 VEIIKPANLLSPETERALMRHTRSPLVNELVP---ISEFWDSKKTVSEIRSVYRCFNDLS 568
Query: 496 LNGYFN----------------GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV 539
++G N G SK + + SALGG + +L + +D+
Sbjct: 569 VSGSLNEANLSVKGSFVEEDPLGLPDILSKLVNAGESGSLALSALGGTLFYLKQAFMDET 628
Query: 540 L---RNGDILPY----------------------KVYRDCLRMDGQ-TLY--LDSCVTSS 571
L ++ PY +++ + + D TLY L+ CVT+
Sbjct: 629 LLRFAKFELFPYSGVSDIFHKPYMVLDAAALENLEIFENSRKGDSSGTLYAQLNHCVTAF 688
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKAR 630
GKRLL++W+ PL ++ I R D V L N + + L +LPD+ERLL R+ A
Sbjct: 689 GKRLLKTWLARPLYHLDSIRERQDAVAGLRGVNLPSALEFRKELSRLPDMERLLARIFAS 748
Query: 631 VQASSCIVLPLI-GKKVLKQQVKVFGSLVKGLRI 663
+A+ ++ + K+Q++ F S ++G +
Sbjct: 749 SEANGRNANKVVFYEDAAKKQLQEFISALRGCEL 782
>gi|297743972|emb|CBI36942.3| unnamed protein product [Vitis vinifera]
Length = 1237
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 182/313 (58%), Gaps = 19/313 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI F E +W +++ + + +DVL S A+ G RP+I + N
Sbjct: 882 LQRLISRFCEHHDKWRQLVSSTAELDVLISLAIANDYYEGPTCRPVI------SGLSNSN 935
Query: 787 GGPVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
P K L HP +LG+ G VPNDI +G C +LLTGPNMGGKSTLL
Sbjct: 936 EVPCFTAKSLGHPVLRSDSLGK--GTFVPNDITIGGSDHACF---ILLTGPNMGGKSTLL 990
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLAVILAQ+G VP E LS D IF R+GA D IM G+STFL E +ETAS+L A
Sbjct: 991 RQVCLAVILAQVGADVPAESFELSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLTSA 1050
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T +SLV LDELGRGTST DG AIA +V V ++ CR +F+THYH L ++ + V+L
Sbjct: 1051 TCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVRCRGMFSTHYHRLAVDYKKNSKVSL 1110
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HMAC G +E+ FLYRL GACP+SYG+ VA +AG+P V++ A+ +
Sbjct: 1111 CHMACQVGKG----VGGVEEVTFLYRLRPGACPKSYGVNVARLAGLPNSVLQKAAAKSRE 1166
Query: 1023 MKKSIGESFKSSE 1035
++ G K S+
Sbjct: 1167 IEGIYGRHRKGSD 1179
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 168/550 (30%), Positives = 269/550 (48%), Gaps = 76/550 (13%)
Query: 173 GPDTPGMHRVVPRLKRIL-EDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEE---- 227
GP +V P+ ++ + E + G ++ SS +++ SV +KN E
Sbjct: 190 GPKKGQSKKVDPKKRKAVGEGTMGSGKRRKSS--GGAEKNTFKVSSVEPMKNAESRKASD 247
Query: 228 -------ADTTSKFEWLDPSKI-------RDANRRRPDDPLYDKRTLYIPPEALKKMSAS 273
D +F + K+ +DA RR P D YD RTLY+PP LK ++
Sbjct: 248 ILDNVLPGDALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGG 307
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI 333
Q+Q+W KS++MD ++FFK+GKFYEL+E+DA IG KELD + G C G E
Sbjct: 308 QRQWWEFKSRHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKGGQPHC---GFPEKNF 364
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGTI-- 386
VEKL +GY+V +EQ ET EQ + R + V+ R++ VVT T +G +
Sbjct: 365 SINVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLS 424
Query: 387 -GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
PDA +L+A+ E +C + S +G VD A R+ +G DD+ C+ L LL ++ P
Sbjct: 425 ANPDASYLMAVTE-SCQFEERS--FGVCVVDVATSRIILGQFRDDSECSTLCCLLSELRP 481
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASE-VKKLVQLNGYFNGSS 504
E+I L E ++AL + + EL P +++F D+ + V ++ + FN S
Sbjct: 482 VEIIKPANLLSPETERALMRHTRSPLVNELVP---ISEFWDSKKTVSEIRSVYRCFNDLS 538
Query: 505 SPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVL---RNGDILPY------------ 548
L N + + SALGG + +L + +D+ L ++ PY
Sbjct: 539 ------LVNAGESGSLALSALGGTLFYLKQAFMDETLLRFAKFELFPYSGVSDIFHKPYM 592
Query: 549 ----------KVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
+++ + + D TLY L+ CVT+ GKRLL++W+ PL ++ I R D
Sbjct: 593 VLDAAALENLEIFENSRKGDSSGTLYAQLNHCVTAFGKRLLKTWLARPLYHLDSIRERQD 652
Query: 596 VVEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLI-GKKVLKQQVKV 653
V L N + + L +LPD+ERLL R+ A +A+ ++ + K+Q++
Sbjct: 653 AVAGLRGVNLPSALEFRKELSRLPDMERLLARIFASSEANGRNANKVVFYEDAAKKQLQE 712
Query: 654 FGSLVKGLRI 663
F S ++G +
Sbjct: 713 FISALRGCEL 722
>gi|403351679|gb|EJY75335.1| DNA repair protein, putative [Oxytricha trifallax]
Length = 1227
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 192/347 (55%), Gaps = 23/347 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L + F + S W + + ++ +D L S A+ AS M RP L +
Sbjct: 808 LFQRFYDNRSYWDQAVMVMAELDCLTSLAI-ASQHQAPMCRPQFLKYEGRYRKK-----A 861
Query: 790 VLKIKGLWHPFALGENGGLP-------VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
L+++ + HP + VPND L+ + R LL+TGPNMGGKSTLL
Sbjct: 862 YLELRQMRHPCIDLKQAQKSEKQQKKFVPNDTLINNSKSNT--RILLVTGPNMGGKSTLL 919
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R TCLAVILAQ+GCFVP E C+L+ D IFTR+GA+DRI+ G+STF VE ET ++L+ A
Sbjct: 920 RQTCLAVILAQIGCFVPAESCILTPVDRIFTRIGASDRILEGKSTFFVEMEETNTILKNA 979
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SL ILDELGRGTSTFDGY+IA+AV L I CR LF+THYH L +F +
Sbjct: 980 TFKSLAILDELGRGTSTFDGYSIAHAVLNYLTNYIKCRSLFSTHYHLLLDKFRDVEGIKS 1039
Query: 963 QHMACAFKSNSENYSKGDQELV-FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
HMAC S+ +Q+ + FLY+ G CP+S+G+ VA MAG+P V+ A +
Sbjct: 1040 YHMACK-------QSETEQDRIEFLYKFIEGDCPQSFGMNVAKMAGLPINVIRHAKLKSQ 1092
Query: 1022 AMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYD 1068
K + + +++ ++ H + + S+ ++D YD
Sbjct: 1093 EFSKKMSKMIFANQNQNYNPIQHVNQQQNNIKQSKSHDRDNNDSDYD 1139
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 200/457 (43%), Gaps = 81/457 (17%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
+L IRDA RRP DP YDK TL+IP K+ + QYW +KS+ D ++FFK+GK
Sbjct: 196 FLRKDHIRDAKMRRPSDPNYDKTTLHIPHNEWKQFTQCMVQYWKIKSENFDKIIFFKLGK 255
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ-LE 354
FYE+++ DAEI +K LD I VG E D E LV G V +EQ LE
Sbjct: 256 FYEIFDYDAEICNKLLD--INFMNNQNRMHVGFPEKNKDKYAEVLVQNGLTVMVVEQMLE 313
Query: 355 TSEQA------KARHTN-------SVISRKLVNVVTPSTTVDGTIGP-DAVHLLAIKEGN 400
QA K H N ++R + + + T D D+ ++LA+K N
Sbjct: 314 NKNQAPNKVLNKNYHQNPYKKYEKECVTRDICQIYSRGTFTDIERAQYDSKYVLALKIDN 373
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
V G + D + + ++G DD S L +L Q+ EVI E +GL +
Sbjct: 374 -------VNIGLCYFDVSTNKCFLGQFEDDESFNTLRTILAQIRAVEVIAE-KGLINQQI 425
Query: 461 KALRKFSAGSAALEL-------TPAMAVTDF----------LDASEV-KKLVQLNGYFNG 502
+ + K S S L T VT F +D EV KKL Q +
Sbjct: 426 EKMIKSSPQSPILHQYRQDQCPTALRTVTTFEKYIQEEKKSIDDFEVLKKLRQDSKIL-- 483
Query: 503 SSSPWSKALENVMQHDIGFSALGGL---------ISHLSRLMLDD--VLRNGDILP---- 547
+ + A++ + H + S L + + + M+ D + +++P
Sbjct: 484 ALQAFGIAIKFLENHLLATSCLKLFRYQLFEPKSMEYSAEFMILDSAAIEQLELIPVEST 543
Query: 548 --------YKVYRDCLRMDGQTL-------------YLDSCVTSSGKRLLRSWICHPLKD 586
++ + L+ D Q + +++ T G RLL+ W+ PL D
Sbjct: 544 TQLQIEKKFERFNPNLQKDQQVILQKPNTSQATLFDFINHTKTDFGNRLLKKWLLAPLMD 603
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
++ IN+RLD +E L++++ + + K+PDL+ L
Sbjct: 604 IDKINDRLDAIEDLIQDTTYLHEFRDNISKMPDLDSL 640
>gi|453088772|gb|EMF16812.1| DNA mismatch repair protein msh6 [Mycosphaerella populorum SO2202]
Length = 1202
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 178/559 (31%), Positives = 271/559 (48%), Gaps = 72/559 (12%)
Query: 209 KRMRLLQDSVAGV--KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEA 266
+++ ++ S AG K + + ++ WL ++I DA+R PD P YD RT+YIPP A
Sbjct: 245 RKLPPMKKSTAGAARKQKAHVTEPSDRYPWL--AEIHDADRNPPDHPDYDPRTIYIPPMA 302
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
K SA +KQYW +K ++ D ++FFK GKFYELYE DA IGH+ D K+T R V
Sbjct: 303 WNKFSAFEKQYWEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMV 360
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTN----------SVISRKLVNVV 376
G+ E+ +D + VA+G+K+ R++Q+E+ R + +I R+L +V+
Sbjct: 361 GVPEASLDHWANQFVAKGFKIARVDQMESKLGKDMRERSDDNKKAKKEEKIIRRELASVL 420
Query: 377 TPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
T T V+G++ D A + AIKE +G +G AFVD A + + DD
Sbjct: 421 TAGTLVEGSMLTDDLATYCAAIKESEV---DGKPNFGIAFVDTATAQFQLAEWVDDVDMT 477
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKL 493
+ Q+ P E++ E + +A + L+ ++ +A L P +FL A + +
Sbjct: 478 RFETFVAQIRPGELLLEKGCISAKAMRILKNNTSPTAIWNYLKPD---KEFLTADKTRMK 534
Query: 494 VQLNGYF-----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
+ YF + S+ W K L D+ FSALG L +LS L ++ D++ G+
Sbjct: 535 INGEAYFETSDEDESADNWPKVLSEAKDKDLVFSALGALTWYLSLLKIERDLITCGNFSW 594
Query: 548 YKVYRDC--LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
Y R L +DGQ+L L+ C+T GKR+LR W+CHPL
Sbjct: 595 YDPIRKASSLVLDGQSLINLEIFANTFDGSTEGTLFTMLNRCITPFGKRMLRQWVCHPLA 654
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKK 645
D IN RLD V+ L + V+ L KLPDLERL+ +RV A C + K
Sbjct: 655 DARKINQRLDAVDALNADGTVMDRFTSSLSKLPDLERLI----SRVHAGRCKPQDFV--K 708
Query: 646 VLK--QQVKVFGSLVKGLRIAMDLLMLMHKEGHII---PSLSRIFK--PPIFDGSDGLDK 698
VL+ +Q++ SL++ LL G +I P L+ K FD D
Sbjct: 709 VLQGFEQIEYTMSLLRKFGEGEGLL------GQLISAMPDLAGALKHWAEAFDRKQATDD 762
Query: 699 FLTQFEAAIDSDFPDYQNH 717
L + ++ DF + Q
Sbjct: 763 GLFIPQPGVEEDFDESQQR 781
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 165/304 (54%), Gaps = 23/304 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E + W I+ +D L S A AS S G+ P + + +N VL
Sbjct: 877 FDEDYATWLAATKIIAQLDCLISLA-RASSSLGS-------PSCRPEFIDDENARSVLDF 928
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP E +PN I LG D LLTG N GKST+LR TC+AVILAQ
Sbjct: 929 QILRHPCI--ETTTNFIPNTISLGGDQASIT----LLTGANAAGKSTILRMTCVAVILAQ 982
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I G+STF+VE +ET +L +AT SLVILDEL
Sbjct: 983 IGCYVPCESARLTPVDRIMSRLGAHDNIFAGQSTFMVELSETKKILAEATPRSLVILDEL 1042
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + + FATHYH L EF HP V + MA +
Sbjct: 1043 GRGTSSYDGVAVAQAVLHHVATHVGSLGYFATHYHSLAAEFQQHPEVVAKRMAVKVDDDV 1102
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS--IGESF 1031
+ + FLY L +G SYG+ A M G+P+KV++ A AA + + + I ES
Sbjct: 1103 RDVT-------FLYELENGVAEGSYGMHCAAMCGIPKKVIDRAEVAAQSWEHTGRIKESL 1155
Query: 1032 KSSE 1035
+ ++
Sbjct: 1156 EKAQ 1159
>gi|301117392|ref|XP_002906424.1| DNA mismatch repair protein Msh6, putative [Phytophthora infestans
T30-4]
gi|262107773|gb|EEY65825.1| DNA mismatch repair protein Msh6, putative [Phytophthora infestans
T30-4]
Length = 1245
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 196/348 (56%), Gaps = 28/348 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + + ++ +D L S + +S S G ++ + N +G P + I
Sbjct: 922 FDEDYKYWMKAVQCLAVLDCLVSLGLLSSQSEGYTKPEVVAASAAN------DGKPFIDI 975
Query: 794 KGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
+ HP G G +PND LG + +LL+GPNMGGKSTLLR TC+ ++A
Sbjct: 976 EEGVHPCVAATYGSGDFIPNDAQLGIQGKGQM---VLLSGPNMGGKSTLLRQTCVLTLMA 1032
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+G FVP C LS D IFTR+GA+DRI+ G+ST VE ETA++L AT SLVILDE
Sbjct: 1033 QIGSFVPAAKCRLSPVDRIFTRIGASDRILAGQSTLFVELAETATILNHATSHSLVILDE 1092
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTSTFDG AIAY+V L+ I CR +FATHYH L +E+ V+L HM C
Sbjct: 1093 LGRGTSTFDGTAIAYSVVEHLLSDIQCRTMFATHYHSLVEEYVEDDRVSLGHMGCIVDPE 1152
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
+E +++ FLY+L G CP+SYG+ VA++A +P +V+E A+ KKS E F+
Sbjct: 1153 NE------RKVTFLYKLEDGMCPKSYGINVAMLAKLPDEVIECAA------KKS--EQFE 1198
Query: 1033 SSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
S Q + + L L V + ++ + D L LW + +N+
Sbjct: 1199 RSLQANSHTELENIRLAQKVR----EVLAEGEAGIDKLKQLWEQARNA 1242
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 184/627 (29%), Positives = 276/627 (44%), Gaps = 105/627 (16%)
Query: 201 NSSLLDSSKRMRLLQD------SVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPL 254
NS+ S+K+ L D SVAG N WL + RD N PD P
Sbjct: 220 NSTPTSSTKKSAPLADGPALPSSVAGAGN-----HIHDSLPWLHEER-RDINGNTPDSPD 273
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD RTL IPPE +KK + + Q+W VKS+ MD +LFFKVGKFYEL+ +DA+IG KEL+
Sbjct: 274 YDPRTLKIPPEFVKKETPAMVQWWEVKSRNMDTVLFFKVGKFYELFHMDADIGFKELN-- 331
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTN-----SVIS 369
+ G G E +LVA+GY+V R+EQ ET + K R+++ V+
Sbjct: 332 -LIYMKGDKAHSGFPEIAYSKMSSQLVAKGYRVARVEQTETPDMLKVRNSSLAKKAKVVR 390
Query: 370 RKLVNVVTPST-TVDGTIGP----DAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRV 422
R++ ++++ T TV P D V +LLA+KE SV +G VDC+
Sbjct: 391 REVCSLLSIGTNTVSFLDAPISSQDQVSKYLLALKEA-FDATQKSVRFGVCMVDCSTGAF 449
Query: 423 WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT 482
+ +D L + Q E++ E + + + L+ + G+ L
Sbjct: 450 QLSEFDDTEQRDRLKTMFAQFHVVEIVTERFNISDDTKMVLKHAAPGAIRSSLRVG---K 506
Query: 483 DFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD--------IGFSALGGLISHLSRL 534
+F DAS+ ++ GYF W A+ ++ D + SALGG I HL R
Sbjct: 507 EFWDASKTIDEIERAGYFKEHG--WPGAVLYFLEMDKVVKSEGQLAISALGGCIWHLRRC 564
Query: 535 MLD-DVLRNGDILPYKVYRDCLR----------------------MDGQTL--------- 562
++D ++L + YK + R +D QT+
Sbjct: 565 LIDHELLSLCNFKRYKPSDEEAREARANREAMSAAKAELNQQYVVLDSQTIQNLEVLCNS 624
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+D VTS G+R+ + W+ PL + I RLD VE L + +++M +
Sbjct: 625 FNGSRSGALIDIMDKTVTSFGRRMFQEWVLKPLCKIGDIQERLDAVEELGTSGDLMMEIR 684
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQ------VKVFGSLVKGLRIAM 665
++LRKLPDLERLL R+ A A P + + Q +K F +++ G AM
Sbjct: 685 EFLRKLPDLERLLSRIHALGSAYRSKEHPDSRAIMYESQIYNVRKIKDFLAVLNGFDEAM 744
Query: 666 DLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAE 725
+L + + P LS+ P L L ++ A D PD DL E
Sbjct: 745 NLTL------ELGPRLSQSNSPI-------LQSLLKRY-AIEDGVQPDVNRGHFPDL-TE 789
Query: 726 TLSILIELFIEKASQWSEVIHAISCID 752
L F + +++ S VI + ID
Sbjct: 790 KLEFFKRSFDQASAKKSGVIVPQAGID 816
>gi|357153628|ref|XP_003576514.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Brachypodium
distachyon]
Length = 1318
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 197/338 (58%), Gaps = 27/338 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI LF+E S+W +++ ++ IDVL S A+ + G RP I R+
Sbjct: 970 LQKLIHLFVEHHSKWRQLVSVVAEIDVLISLAIASDYFEGPTCRPTI---------RESY 1020
Query: 787 GG---PVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
G P + L HP +LG+ G VPNDI +G + ++LTGPNMGGKS
Sbjct: 1021 GSDDTPTFYARNLGHPIIRSDSLGK--GSFVPNDIKMGGPGNASF---IVLTGPNMGGKS 1075
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
TLLR CL +ILAQ+G VP E SL D IF R+GA D IM G+STFLVE ETASVL
Sbjct: 1076 TLLRQVCLTIILAQIGANVPAENFEFSLVDRIFVRMGARDHIMAGQSTFLVELMETASVL 1135
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
AT++SLV LDELGRGTST DG AIA +V LV + C LF+THYH L E
Sbjct: 1136 SSATKNSLVALDELGRGTSTSDGQAIAASVLEYLVHHVQCLGLFSTHYHRLAVE-QQDIK 1194
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019
V+L HMAC G +E+ FLYRLT+G+CP+SYG+ VA +AG+P V++ A+
Sbjct: 1195 VSLCHMACEVGMG----EGGLEEVTFLYRLTAGSCPKSYGVNVARLAGIPASVLQRANQK 1250
Query: 1020 ALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ + + G+ +++ + +L E+ TI ++ RV
Sbjct: 1251 SNEFEANYGKQHFATKDKF-VCALREDNFATIKDLFRV 1287
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 153/536 (28%), Positives = 247/536 (46%), Gaps = 76/536 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF++L + +DA RRP P YD RTL +PP+ L ++ Q+Q+W KSQ+MD +LFFK
Sbjct: 332 KFKFLGDGR-KDAKGRRPGHPAYDPRTLSLPPQFLANLTGGQRQWWEFKSQHMDKVLFFK 390
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYELYE+DA +G +ELD + C G E + +EKL +GY+V +EQ
Sbjct: 391 MGKFYELYEMDAHVGARELDLQYMKGDQPHC---GFPEKNLSVNLEKLAQKGYRVLVVEQ 447
Query: 353 LETSEQAKARHTNS-----VISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKE----GN 400
ET Q + R + V+ R++ +VT T +G PD ++L++ E +
Sbjct: 448 TETPNQLELRRKETGTKDKVVRREICAMVTKGTLTEGEFLLANPDPSYILSVAESYQHSS 507
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+G + G VD + + VG DDA L ++L ++ P E+I + L E +
Sbjct: 508 KKSQDGHTI-GVCIVDVSTSKFVVGQFQDDAERHVLCSILSEIRPVEIIKPAKMLSPETE 566
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIG 520
+AL+ + +L P+ T+F DA K + ++ Y++ S + +Q+++G
Sbjct: 567 RALKNNTRDPLINDLLPS---TEFWDAE--KTIHEIEQYYSSSDKLTTSQNTPGVQNNVG 621
Query: 521 ------------------FSALGGLISHLSRLMLDDVL------------------RNGD 544
SALGG + +L +++LD L R
Sbjct: 622 CLPALLSELIGAGDRAYALSALGGSLFYLRQVLLDKKLIPCAEFEPLTCSGLLNNTRKHM 681
Query: 545 ILPYKVYRDCLRMDGQ------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
I + ++ TLY L+ CVT GKRLL+ WI PL D + I R
Sbjct: 682 IFDAAALENLEILENATGGLSGTLYAQLNHCVTGFGKRLLKRWIVRPLYDSKAILQRQGA 741
Query: 597 VEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKARV-----QASSCIVLPLIGKKVLKQQ 650
+ E + + L +LPD+ERLL R+ + + S ++ + K++L+Q
Sbjct: 742 IAIFKGVGHECAIQFRKDLSRLPDMERLLARLFSSCDENGRSSKSVVLYEDVSKRLLQQF 801
Query: 651 VKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKP--PIFDGSDGLDKFLTQFE 704
+ + + ML EG + L+ + P + D S LD F F+
Sbjct: 802 TSALRGCQQMFQACSSVRMLTGTEGSCL--LNDLLSPGKGLPDVSSILDHFRDAFD 855
>gi|303287829|ref|XP_003063203.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455035|gb|EEH52339.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 290
Score = 244 bits (623), Expect = 2e-61, Method: Composition-based stats.
Identities = 133/302 (44%), Positives = 182/302 (60%), Gaps = 40/302 (13%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
WS++ A + +DVL SFA A+ G RP V + GG L+++ +WHP
Sbjct: 1 WSDLARAAATVDVLASFASFAATHDGPTCRPTF--------VDAEGGGATLELENVWHPC 52
Query: 801 AL-----------GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
A+ G G+ VPND++LG+ + + PR +LLTG NMGGKSTL ATC+AV
Sbjct: 53 AVAGGMLRGRAGAGGTSGI-VPNDVVLGDVARET-PRAMLLTGANMGGKSTL--ATCVAV 108
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLG-ATDRIMTGESTFLVECTETASVLQKATQDSLV 908
+LA G P CVLS D +FTRLG A DR+ TGESTFLVEC E A +L++AT SLV
Sbjct: 109 VLAHAGALAPASRCVLSPVDVVFTRLGGAGDRVATGESTFLVECAEAAVILREATPSSLV 168
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGTSTFDGY++A+A F++L + CR +FATH+H L +EF + P V L HMA
Sbjct: 169 VVDELGRGTSTFDGYSVAFAAFKKLALGVGCRTMFATHFHGLAREFRASPDVQLAHMAAT 228
Query: 969 FKS----------------NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
+ + + FLY+L GACP+SYG++VA +A VP++V
Sbjct: 229 VADAGGGEDDARGGGGGSAIASAAAPAPPPITFLYKLRPGACPKSYGVRVAALAAVPKEV 288
Query: 1013 VE 1014
++
Sbjct: 289 LK 290
>gi|255548475|ref|XP_002515294.1| ATP binding protein, putative [Ricinus communis]
gi|223545774|gb|EEF47278.1| ATP binding protein, putative [Ricinus communis]
Length = 1306
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/313 (44%), Positives = 183/313 (58%), Gaps = 20/313 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI F E +W ++ A + +DVL S A+ + G RP+IL S +
Sbjct: 957 LQRLIVQFCEHHDKWRQLNSATAELDVLISLAIASDFYEGQACRPVILGSSSSEM----- 1011
Query: 787 GGPVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
P K L HP +LG+ G VPND+ +G +LLTGPNMGGKSTLL
Sbjct: 1012 --PCFSAKSLGHPILKSDSLGK--GAFVPNDVSIGGSDGASF---ILLTGPNMGGKSTLL 1064
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLAVILAQ+G VP E LS D IF R+GA D IM G+STFL E +ETA +L A
Sbjct: 1065 RQVCLAVILAQVGADVPAESFELSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1124
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV LDELGRGTST DG AIA +V V R+ CR +F+THYH L+ ++ P V+L
Sbjct: 1125 TRNSLVTLDELGRGTSTSDGQAIAESVLEHFVHRVQCRGMFSTHYHRLSVDYQKDPKVSL 1184
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HMAC +E+ FLYRLT GACP+SYG+ VA +AG+P +++ A+ +
Sbjct: 1185 CHMACQVGRGVGEV----EEVTFLYRLTPGACPKSYGVNVARLAGLPDPILQKAAAKSRE 1240
Query: 1023 MKKSIGESFKSSE 1035
+ G+ + SE
Sbjct: 1241 FEVIYGKHRRRSE 1253
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 222/465 (47%), Gaps = 72/465 (15%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
W ++ RDA R+RP D YD RTLY+PP +K +S Q+Q+W KS++MD +LFFK+GK
Sbjct: 309 WFLGAERRDAKRKRPGDADYDPRTLYLPPSFVKSLSGGQRQWWEFKSKHMDKVLFFKMGK 368
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLET 355
FYEL+E+DA +G KELD + C G E VEKL +GY+V IEQ ET
Sbjct: 369 FYELFEMDAHVGAKELDLQYMKGEQPHC---GFPERIFSMNVEKLTRKGYRVLVIEQTET 425
Query: 356 SEQAKARHT-----NSVISRKLVNVVTPSTTVDG---TIGPDAVHLLAIKEG--NCGPDN 405
EQ + R + V+ R++ VVT T +G T PDA +L+A+ E N N
Sbjct: 426 PEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLTANPDASYLMAVTESQQNLEGQN 485
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
+G D A R+ +G DD+ C++L LL ++ P E+I + L E ++ L +
Sbjct: 486 FEPTFGICVADVATSRIILGQFVDDSECSSLCRLLSELRPVEIIKPAKSLSSETERLLLR 545
Query: 466 FSAGSAALELTPAMAVTDFLDAS------------------------EVKKLVQLNGYFN 501
+ +L P +++F DA E K L
Sbjct: 546 HTRNPLVNDLVP---LSEFWDAEKTVHEVKIIYKHISDQSASRSLNKEDKDTANLQFTEE 602
Query: 502 GSSSPWSKALENVMQHDIG---FSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCL 555
G S LE V + D G SALGG + +L + LD+ L + LP + D
Sbjct: 603 GPSCLPEILLELVNKGDNGRLALSALGGTLYYLKQAFLDETLLRFAKFESLPCSDFCDVA 662
Query: 556 R-----MDGQ------------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGI 590
+ +D TLY L+ CVT+ GKRLL++W+ PL + I
Sbjct: 663 QKPYMILDAAALENLEIFENSRNGGLSGTLYAQLNHCVTAFGKRLLKTWLARPLYHLRSI 722
Query: 591 NNRLDVVEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
+R D V L N + + L +LPD+ERL+ R+ A +A+
Sbjct: 723 VDRQDAVAGLRGVNQPATLEFRKALSRLPDMERLIARIFASSEAN 767
>gi|12846234|dbj|BAB27085.1| unnamed protein product [Mus musculus]
Length = 444
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP ++LP ++ P L+
Sbjct: 123 FDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPG--------EDTHPFLE 174
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
KG HP G +PNDIL+G E + +L+TGPNMGGKSTL+R L
Sbjct: 175 FKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLL 234
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQLGC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV
Sbjct: 235 AVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLV 294
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC
Sbjct: 295 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACM 354
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 355 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 409
>gi|348688376|gb|EGZ28190.1| hypothetical protein PHYSODRAFT_353490 [Phytophthora sojae]
Length = 880
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 198/346 (57%), Gaps = 28/346 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + + ++ +D L S + +S S G ++ + N G P + I
Sbjct: 549 FDEDYKYWMKAVQCLAVLDCLVSLGLLSSQSEGYTKPEVVAASAAN------GGTPFIDI 602
Query: 794 KGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
+ HP G G +PND LG + + +LL+GPNMGGKSTLLR TC+ ++A
Sbjct: 603 EEGVHPCVAATYGSGDFIPNDAHLGIEGKG---QMVLLSGPNMGGKSTLLRQTCVLTLMA 659
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+G FVP C LS D IFTR+GA+DRI+ G+ST VE ETA++L AT SLVILDE
Sbjct: 660 QIGSFVPAAKCRLSPVDRIFTRIGASDRILAGQSTLYVELAETATILNHATSHSLVILDE 719
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTSTFDG AIAY+V L+ I CR +FATHYH L +E+ + V+L HM C +
Sbjct: 720 LGRGTSTFDGTAIAYSVVEHLLSDIQCRTMFATHYHSLVEEYVGNDKVSLGHMGCIV--D 777
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
EN D+++ FLY+L G CP+SYG+ VA++A +P +VVE A+ KKS E F+
Sbjct: 778 PEN----DRKVTFLYKLEDGMCPKSYGINVAMLAKLPDEVVECAA------KKS--EQFE 825
Query: 1033 SSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELK 1078
S Q + + L E L+ V + + + D L LW E +
Sbjct: 826 RSLQANSHTEL--ETLRLAQKVK--EALEEGEAGVDKLKQLWQEAR 867
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/414 (25%), Positives = 168/414 (40%), Gaps = 84/414 (20%)
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
HLLA+KE P +V +G VDC+ + +D L L Q E++ E
Sbjct: 47 HLLALKEA-FDPTQKTVRFGVCMVDCSTGAFQLSEFDDTEQRDRLKTLFAQFHIVEIVTE 105
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAV-TDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
+ + + L+ SA + ++ V +F AS+ ++ GYF W +
Sbjct: 106 RFNISDDTKMTLKH----SAPAAIRSSLRVGKEFWGASKTIDEIERAGYFK--EHGWPED 159
Query: 511 LENVMQHDIG--------FSALGGLISHLSRLMLDDVLRNGDILPYKVYR---------- 552
+ + ++ D G SALGG I HL R ++D L + + +K Y+
Sbjct: 160 VLHFLEVDKGVKPEGQLAISALGGCIWHLRRSIIDQELLS--LCNFKRYKPSDEEAREAR 217
Query: 553 ---------------DCLRMDGQTL--------------------YLDSCVTSSGKRLLR 577
+ +D QT+ +D VTS G R+ +
Sbjct: 218 ANKEALSAAKAELNQQYVVLDSQTIQNLEVLCNSFNGSRSGSLIDIMDKTVTSFGGRMFQ 277
Query: 578 SWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCI 637
W+ PL + I RLD VE L + +++M + ++LRKLPDLERLL R+ A A
Sbjct: 278 EWVLKPLCKIGDIQERLDAVEELGNSGDLMMEIREFLRKLPDLERLLSRIHALGSAHRSQ 337
Query: 638 VLPLIGKKVLKQQ------VKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFD 691
P + + Q +K F S++ G AM+L + + P LS+ P
Sbjct: 338 EHPDSRAIMYESQTYNIRKIKEFLSVLNGFDEAMNLTL------ELGPRLSQSTSPI--- 388
Query: 692 GSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI 745
L L +++ D PD ++ DL E L F + A++ S VI
Sbjct: 389 ----LQSLLKRYQIE-DGVQPDIKHGHFPDL-TEKLEFFKRSFDQAAAKKSGVI 436
>gi|153811376|ref|ZP_01964044.1| hypothetical protein RUMOBE_01768 [Ruminococcus obeum ATCC 29174]
gi|149832503|gb|EDM87587.1| DNA mismatch repair protein MutS [Ruminococcus obeum ATCC 29174]
Length = 872
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 232/841 (27%), Positives = 373/841 (44%), Gaps = 147/841 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
++Y K Y D +LF+++G FYE++ DA + KEL+ +T G + GI
Sbjct: 3 REYCKTKENYKDCILFYRLGDFYEMFFDDAILVSKELELTLTGKDCGLEERAPMCGIPFH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ +++L+ +G+KV EQ+E ++AK ++ R+++ VVTP TT+D T ++
Sbjct: 63 AAETYIKRLIEKGHKVAICEQVEDPKKAKG-----LVKREVIRVVTPGTTLDATSLDESR 117
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+ + + G + DC V D L + + P E+I
Sbjct: 118 NNYLMSIVSLEDHFGCAIADITTGDCFLTEV-------DKPQKLLDE-INKFVPAEII-- 167
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTDF-LDASEVKKLVQLNGYFNGSSSPWS-- 508
C +A F +G +L + + F LD N YF+ S +
Sbjct: 168 ----CNDAF-----FMSGVDTEDLKDRLRICIFPLD----------NWYFDDSLCQRTLK 208
Query: 509 -----KALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL------ 555
LE + +D G A G L +L+ + I PY + L
Sbjct: 209 EHFHVNTLEGLGLQDYDSGVIAAGALFQYLNETQKTALSHMATIHPYTADKFMLIDSSSR 268
Query: 556 ------------RMDGQTLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
+ G L++ D T+ G R LR ++ PL D E IN RL VE L +
Sbjct: 269 RNLELVETLREKQKRGSLLWVLDKTKTAMGARTLRGYVEQPLIDAEEINLRLGAVEELTQ 328
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVF 654
+ + +YL + DLERL+ R+ + ASS ++P I + + + + +
Sbjct: 329 KPMLRDEIREYLNPIYDLERLISRISYQSANPRDMVAFASSLEMIPYIRQILQEFEAPIL 388
Query: 655 GSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDG------------SDGLDKFLTQ 702
+ + + D+ L+ + P L++ I +G +DG K+L +
Sbjct: 389 KQIFEDMDPLEDVTDLIKRAITDEPPLAQKDGGIIREGYNADVDKYRHSRTDG-KKWLAE 447
Query: 703 FEA-----------------------AIDSDFPD-----------------YQNHDVTDL 722
EA + + F D Y ++ DL
Sbjct: 448 LEAREKERTGIKTLKIKYSRVFGYALEVTNSFKDQVPDNYVRKQTLTNAERYITQELKDL 507
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ L L+ + +++V + +V+R ++++ + L L +N V
Sbjct: 508 EDLILGAEDRLYALEYELFADVRDKVGK-EVVRIQKTAKAIAALDVFASLALVAERNNFV 566
Query: 783 R-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKS 839
R + N VL IK HP + ND+ + D+ D+ R ++TGPNM GKS
Sbjct: 567 RPKINENGVLDIKNGRHPVV-----EQMIENDMFIANDTYLDNQKKRVSIITGPNMAGKS 621
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T +R T L V++AQ+G FVP E + + D IFTR+GA+D + +G+STF+VE TE A++L
Sbjct: 622 TYMRQTALIVLMAQIGSFVPAEKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANIL 681
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC--RLLFATHYHPLTKEFASH 957
+ AT SL+ILDE+GRGTSTFDG AIA++V + C + LFATHYH LT+
Sbjct: 682 RNATSRSLLILDEIGRGTSTFDGLAIAWSVIEHISNTKLCGAKTLFATHYHELTELEGKI 741
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
P V +A KGD ++VFL ++ G +SYG+QVA +AGVP V+ A
Sbjct: 742 PGVNNYCIAVK--------EKGD-DIVFLRKIVKGGADKSYGIQVAKLAGVPDSVINRAK 792
Query: 1018 H 1018
Sbjct: 793 E 793
>gi|406605450|emb|CCH43094.1| DNA mismatch repair protein [Wickerhamomyces ciferrii]
Length = 1254
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 157/437 (35%), Positives = 226/437 (51%), Gaps = 45/437 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL IRDA+R DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 310 RYQWL--IDIRDADRNSITDPQYDPRTLYIPSSAWAKFTNFEKQYWEIKSKMWDCIVFFK 367
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I H E D KI G + GI E D + +GYKV +++Q
Sbjct: 368 KGKFYELYEKDAMIAHNEFDLKIAGGGRANMQLAGIPEMSFDFWATSFITKGYKVAKVDQ 427
Query: 353 LETSEQAKARHTN--------SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+ET + R +N VI R+L V+T T D ++ D A + +A+KE +
Sbjct: 428 IETGLAKEIRESNGQAPKGKKDVIQRELKCVLTAGTLTDESMLSDDMATYCIAVKE-DVD 486
Query: 403 PDN-GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
P+N V+G AF+D A ++ + DD+ C L L Q+ PKE+I L + A +
Sbjct: 487 PENENGKVFGVAFIDTATGQIQLTEFKDDSECTKLETLASQLRPKELIISKNNLSQLALR 546
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS----SPWSKALENV--M 515
L KF++ + A+ + ++F D + + YF S S W K L+
Sbjct: 547 IL-KFNSQNNAI-FNYIKSESEFYDFDTTFETLTRGKYFPAESLDDLSNWPKTLKEFYET 604
Query: 516 QHDIGFSALGGLISHLSRLMLDDVLRN-GDILPYKVYRDC--LRMDGQTL---------- 562
Q +GFSA GGL+ +L L LD+ L + G+I PY + L +DGQTL
Sbjct: 605 QKFVGFSAFGGLLWYLQSLKLDESLVSIGNISPYTTIKPSTNLVLDGQTLQNLEIFANSF 664
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
++ T GKRLL++W+ HPL I+ RLD V+ L+++ ++ +
Sbjct: 665 DGTEKGTLFKLINRATTPFGKRLLKTWVVHPLLQQTDIDARLDSVDQLLEDGDLRSTIEF 724
Query: 613 YLRKLPDLERLLGRVKA 629
L KLPDLERLL RV A
Sbjct: 725 SLVKLPDLERLLSRVHA 741
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 168/296 (56%), Gaps = 23/296 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
++ + + F S WS I+AI+ ID L S A T S ++ P + P+ V +
Sbjct: 911 ITRMFKRFDTDYSVWSSAINAIAKIDCLVSLAKT----SESIGFPSVRPK----FVESET 962
Query: 787 GGPVLKIKGLWHP-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G +L+ K L HP F +G +PNDI LG S P LLTG N GKST+LR
Sbjct: 963 G--ILEFKELRHPCFNMGITASKDFIPNDISLGGSS----PNLGLLTGANAAGKSTVLRM 1016
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AV+LAQ+G VPCE L+ D I TRLGA D IM G+STF VE +ET +L+ AT
Sbjct: 1017 TCIAVLLAQIGSHVPCESATLTPVDRIMTRLGANDNIMQGKSTFFVELSETKRILENATP 1076
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SL++LDELGRG S+ DG+AIA AV + I FATHY L + F +HP +
Sbjct: 1077 KSLLVLDELGRGGSSSDGFAIAEAVLHHVATHIQSLGFFATHYGSLGQSFQNHPQIKPFR 1136
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
MA + S+N + FLY+L GA S+G+ VA M G+ +++++ + AA
Sbjct: 1137 MAIIVDNESKN-------ITFLYKLEEGAAEGSFGMHVASMCGIEKEIIDNSEIAA 1185
>gi|432906031|ref|XP_004077496.1| PREDICTED: DNA mismatch repair protein Msh6-like [Oryzias latipes]
Length = 1381
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/302 (43%), Positives = 186/302 (61%), Gaps = 18/302 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLI-LPQSKNPAVRQDNGGPVLK 792
F + W + ++ +DVL + + + G M RP + LP+ + AV P +
Sbjct: 1055 FDKNYGDWKTSVECMAVLDVLLAMSRYSQGGDGPMTRPEVELPEDGDQAV------PFIN 1108
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG-------EDSDDCLPRTLLLTGPNMGGKSTLLRA 844
+ G HP G +PNDI +G + + C +L+TGPNMGGKSTL+R
Sbjct: 1109 LVGSRHPCVTKTFFGDDFIPNDIYIGCPGNGDGLEEEGCA-SCVLVTGPNMGGKSTLMRQ 1167
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L VILAQLGC+VP E + D +FTRLGA+DRIM GESTF VE +ETAS+L AT+
Sbjct: 1168 CGLVVILAQLGCYVPAESLRFTPVDRVFTRLGASDRIMAGESTFFVELSETASILHHATK 1227
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLV+LDELGRGT+T+DG AIA AV ++L E++ CR LF+THYH L +++A + V L H
Sbjct: 1228 HSLVLLDELGRGTATYDGTAIASAVVKELAEKVCCRTLFSTHYHSLVEDYAKNSAVRLGH 1287
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
MAC ++ E+ S+ + + FLY+ SGACP+SYG A +A +P++V+++ A +
Sbjct: 1288 MACMVENECEDPSQ--ETITFLYKFISGACPKSYGFNAARLANLPEEVIQSGHKKAREFE 1345
Query: 1025 KS 1026
+S
Sbjct: 1346 RS 1347
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 156/507 (30%), Positives = 229/507 (45%), Gaps = 84/507 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K EWL K +D RRR D YD +LY+P + L +++ +++W +KS+ D ++F+K
Sbjct: 382 KLEWLQEGKRKDGKRRRQTDEDYDPTSLYVPEDFLNRITPGMRRWWQLKSEMFDTVIFYK 441
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL G G E G + LV +GYKV R+EQ
Sbjct: 442 VGKFYELYHMDAVIGVNELGLTFM---KGTWAHSGFPEIGFARFSDVLVHKGYKVARVEQ 498
Query: 353 LETSEQAKAR--------HTNSVISRKLVNVVTPST----TVDGTIG-PDAVHLLAIKEG 399
ET E +AR + V+ R++ +VT T +DG + LL++KE
Sbjct: 499 TETPEMMEARCKAMAKPSKFDRVVRREVCRIVTRGTQTYSVLDGAPSESQSKFLLSLKEK 558
Query: 400 NCGPDNGSV-VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+G VYG FVD + VG DD C+ L L+ +P EV++E E
Sbjct: 559 PEEESSGHCRVYGVCFVDTSVGYFHVGQFPDDRHCSRLRTLIAHFAPAEVLFEKGNPSVE 618
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK-------AL 511
+K L+ ++ S+AL+ + F DA + K + YF S+ + AL
Sbjct: 619 TRKILK--ASLSSALQ-EGLHGGSQFWDAQKTLKTLSEEDYFKESAGEEKQTGGCFLPAL 675
Query: 512 ENVMQ-------------HDIGFSALGGLISHLSRLMLDDVLRN----GDILPYKV---- 550
M +++ SALGG I +L + ++D L + + +P V
Sbjct: 676 LKKMTSESDSLCLSPKEGYELALSALGGCIFYLKKCLVDKELLSMANFEEYVPVDVEMAK 735
Query: 551 --------YRDCLRM--DGQTL-------------------YLDSCVTSSGKRLLRSWIC 581
+ LRM DG TL LD+C T GKRLL+ W+C
Sbjct: 736 AAGPSSFFAQTRLRMVLDGVTLANLEIFQNGSGRTEGTLLERLDTCSTPFGKRLLKQWLC 795
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPL 641
PL + I +RLD +E LM A+ L+KLPDLERLL ++ + I PL
Sbjct: 796 APLCNPTAIKDRLDALEDLMGAQAQATEAAELLKKLPDLERLLSKIHS-------IGTPL 848
Query: 642 IGKKVLKQQVKVFGSLVKGLRIAMDLL 668
GK + ++ + R D L
Sbjct: 849 KGKDHPDSRAVLYEEVTYSKRKIADFL 875
>gi|114331988|ref|YP_748210.1| DNA mismatch repair protein MutS [Nitrosomonas eutropha C91]
gi|122313305|sp|Q0AEI7.1|MUTS_NITEC RecName: Full=DNA mismatch repair protein MutS
gi|114309002|gb|ABI60245.1| DNA mismatch repair protein MutS [Nitrosomonas eutropha C91]
Length = 880
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 240/872 (27%), Positives = 368/872 (42%), Gaps = 157/872 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---CRQVGISES 331
+QY +K+Q+ D LLF+++G FYEL+ DAE + LD +T G + G+
Sbjct: 21 QQYLRIKTQHTDKLLFYRMGDFYELFYEDAEKAARLLDITLTHRGSSAGEPIKMAGVPFH 80
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI----G 387
D + KLV G + EQ+ +K + R++V ++TP T D + G
Sbjct: 81 AADQYLAKLVKLGESIAICEQIGDPATSKG-----PVERQVVRIITPGTLTDAGLLEERG 135
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSP 445
V LA+ G V G A+++ AA +RV + S L + L ++ P
Sbjct: 136 NSIVLTLALHHG---------VIGLAWLNLAAGDMRVL------ETSPDNLASELERLHP 180
Query: 446 KEVIY-ENRGL-----CKEAQKALR--KFSAGSAALELTPAMAVTDF--LDASEVKKLVQ 495
E++ E+ L A K L +F A +LT D E++ +
Sbjct: 181 SEILLPESLALPVILNSFTAPKRLPDWQFDYEHAMQQLTRQFGTRDLNAFGCEELRAAIM 240
Query: 496 LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD--DVLRNGDILPYKVYRD 553
G + QH + ++ HL L ++ + D +
Sbjct: 241 AAGALFEYV--------RLTQHTATDESATQVLGHLQTLRVERPETYLRMDAATRRNLEI 292
Query: 554 CLRMDGQ---TL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
L + G+ TL LD C TS G RLLR W+ HPL++ + RLD V L+ ++
Sbjct: 293 TLTLRGEEAPTLSSLLDICATSMGSRLLRHWLHHPLRNRITLQQRLDAVSDLIGAKPGIL 352
Query: 609 V--VAQYLRKLPDLERLLGRVKARVQA--------SSCIVLPLIGKKVLKQQVKVFGSLV 658
+ + L+ + D+ER+ R+ R S LP I K + V
Sbjct: 353 YAGIRERLKHIADIERITSRIALRTARPRDLSGLRDSLTALPEIIKLITTSTAIAIHRFV 412
Query: 659 KGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDG-LDK----------FLTQFEA-- 705
+ L L+ +P I DG D LD+ FL Q EA
Sbjct: 413 PAMEPDTTLTQLLVHALQPVPGAVIREGGVIADGYDAELDELRALQKNCGEFLLQLEARE 472
Query: 706 -----------------------------AIDSDF--------------PDYQNHDVTDL 722
I +D+ P+ Q + L
Sbjct: 473 RERTGIPTLKVEYNRVHGFYIEVTRIHGEKIPADYRRRQTLKNAERYSIPELQVFENKTL 532
Query: 723 DAETLSI-----LIELFIEKASQW----SEVIHAISCIDVLRSFAVTASMSSGAMHRPLI 773
A ++ L E +E+ + + E+ +++ +DVL +FA A +
Sbjct: 533 TAREQALAQEKKLYEQLLEQLADFIIPLQEIARSVAELDVLCAFAERADLFG-------- 584
Query: 774 LPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGP 833
P D P L I+ HP + + NDI LG + + + L++TGP
Sbjct: 585 ---YTKPVFTDD---PALDIEAGRHPVVENQIEQY-IANDIQLGAVTREGR-QMLIITGP 636
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NMGGKST +R T L ++LA G FVP + D IFTR+GA D + G STF+VE T
Sbjct: 637 NMGGKSTYMRQTALIILLAHCGSFVPAGSARIGPIDQIFTRIGAADDLAGGRSTFMVEMT 696
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953
E AS+L+ AT SLV++DE+GRGTSTFDG A+A+A+ R L+ + LFATHY LT+
Sbjct: 697 EAASILRNATAQSLVLVDEIGRGTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRL 756
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
P H+ + + +VFL+R+ G+ SYGL VA +AGVP KV+
Sbjct: 757 AEEFPQAINVHVTAV---------EHKRRIVFLHRIEEGSASRSYGLHVAALAGVPDKVI 807
Query: 1014 EAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
A +++ E+ S Q++ F ++ E
Sbjct: 808 RNAGKILAQLEQ---EALSKSPQQTLFETIEE 836
>gi|346974058|gb|EGY17510.1| DNA mismatch repair protein msh6 [Verticillium dahliae VdLs.17]
Length = 1211
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 156/482 (32%), Positives = 246/482 (51%), Gaps = 49/482 (10%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
+ + ++ WL + I D +R+ P DP Y+ ++YIPP A K S +KQYW +K D +
Sbjct: 288 EPSDRYPWL--ANITDIDRKSPGDPEYNPSSIYIPPGAWNKFSPFEKQYWAIKQNLWDTI 345
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKF+ELYE DA IGH+ D+K+T R VG+ ES +D V + VA+G+KV
Sbjct: 346 VFFKKGKFFELYENDATIGHQLFDFKMT--DRVNMRMVGVPESSLDMWVNQFVAKGFKVA 403
Query: 349 RIEQLETS----------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAI 396
R++Q+E++ + AK++ + +I R+L ++T T V+G++ D A + AI
Sbjct: 404 RVDQMESALGKEMRERDDQAAKSKKVDKIIRRELACILTGGTLVEGSMLQDDLATYCAAI 463
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE +G +G +FVDCA + ++ DD + Q SP+E++ E L
Sbjct: 464 KESIT---DGIPSFGISFVDCATGQFFITEFEDDVDLTKFETFVAQTSPRELLLEKSLLS 520
Query: 457 KEAQKALRKFSAGSAALEL-TPAMAVTDFLDASEVKKLVQLNGYFNGSSSP---WSKALE 512
+A + L+ ++ + P + +FLDA ++ + GYF+G W L
Sbjct: 521 SKALRILKNNTSPTTIWNYRKPGL---EFLDADVTRRELDTGGYFDGDGEKEGGWPAVLA 577
Query: 513 NVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYR--DCLRMDGQTL------- 562
+ D+ S+LG L+ +L L ++ +L G+ Y R L +DGQTL
Sbjct: 578 EAKEKDLAMSSLGALVKYLQLLKIEQSLLSQGNFEWYNPIRRNGTLILDGQTLINLEVFA 637
Query: 563 -------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
L+ CVT GKRL R W+CHPL D++ IN RLD V+ L + V
Sbjct: 638 NSANGSTEGTLFTLLNKCVTPFGKRLFRQWVCHPLCDIDRINERLDAVDMLNSDRSVREQ 697
Query: 610 VAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLM 669
+ + K+PDLERL+ R+ A V V L G + ++ + + G+ G + LL
Sbjct: 698 FSAQMTKMPDLERLISRIHAGVCRPDDFVKVLEGFEQIEYTMSLLGAWGGGKGLVDRLLS 757
Query: 670 LM 671
M
Sbjct: 758 SM 759
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F + W + I IS +D L S A +S RP + + ++
Sbjct: 885 EVASRFFRRFDADYATWLQAIRIISQLDCLVSLAKASSSLGEPSCRPQFVDEERS----- 939
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
+++ L HP L +PN I LG +S + LLTG N GKST+LR
Sbjct: 940 -----LVEFDELRHPCMLNTVSDF-IPNAIELGGNS----AKINLLTGANAAGKSTVLRM 989
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 990 TCTAVIMAQIGCYVPATSARLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILAEATP 1049
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + + C FATHYH L EF +HP V +
Sbjct: 1050 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHVGCIGFFATHYHSLATEFENHPEVRARR 1109
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + ++ + FLY+L G S+G+ A M G+ +++E A AA
Sbjct: 1110 MQI-------HVDEAERRVTFLYKLEDGVAEGSFGMHCAAMCGINNRIIERAEVAA 1158
>gi|51091506|dbj|BAD36244.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group]
gi|51091562|dbj|BAD36299.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group]
Length = 1253
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 187/308 (60%), Gaps = 22/308 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI+LF+E S+W +++ ++ +DVL S A+ + G P+I +S P +
Sbjct: 906 LQNLIQLFVEHHSKWRQLVSVVAELDVLISLAIASDFFEGPTCCPII-KESYGP-----D 959
Query: 787 GGPVLKIKGLWHPFALGEN--GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
P L + L HP ++ G VPNDI +G + ++LTGPNMGGKSTLLR
Sbjct: 960 DTPTLHARNLGHPTLRSDSLGSGSFVPNDIKMGGPGNASF---IVLTGPNMGGKSTLLRQ 1016
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
CL +ILAQ+G VP E LSL D +F R+GA D IM G+STFLVE ETASVL AT+
Sbjct: 1017 VCLTIILAQIGANVPAESFELSLVDRMFVRMGARDHIMAGQSTFLVELMETASVLSSATK 1076
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
+SLV LDELGRGTST DG AIA +V LV + C LF+THYH L E V+L H
Sbjct: 1077 NSLVALDELGRGTSTSDGQAIAASVLEYLVHHVQCLGLFSTHYHRLAAE-NKDSKVSLCH 1135
Query: 965 MACAFKSNSENYSKGD---QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
MAC SKG+ +E+ FLY+LT G+CP+SYG+ VA +AG+P V++ A+ +
Sbjct: 1136 MACEI-------SKGEGGLEEVTFLYKLTPGSCPKSYGVNVARLAGIPASVLQRANEKSS 1188
Query: 1022 AMKKSIGE 1029
+ S G+
Sbjct: 1189 DFEASYGK 1196
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 213/447 (47%), Gaps = 61/447 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF++L + +DA RRP +P YD RTL +P + L ++ Q+Q+W KSQ+MD +LFFK
Sbjct: 272 KFKFLGEGR-KDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFK 330
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYEL+E+DA +G KELD + C G E + +EKL +GY+V IEQ
Sbjct: 331 MGKFYELFEMDAHVGAKELDLQYMKGDKPHC---GFPEKNFELNLEKLAKKGYRVLVIEQ 387
Query: 353 LETSEQAKARHTNS-----VISRKLVNVVTPSTTVDGT---IGPDAVHLLAIKEG-NCG- 402
ET EQ R + V+ R++ +VT T +G PD +L ++ E CG
Sbjct: 388 TETPEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGS 447
Query: 403 -PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
D G VD + + VG DDA L ++L ++ P E+I + L E +K
Sbjct: 448 EKDQDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKPAKMLSPETEK 507
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA------LENVM 515
AL+ + L P+M +F DA K + ++ Y+ +P + A L ++
Sbjct: 508 ALKSNTRDPLINNLLPSM---EFWDAE--KTIHEIKQYYCSLDTPGAGAQISSAYLPELL 562
Query: 516 QHDI-------GFSALGGLISHLSRLMLDDVL------------------RNGDILPYKV 550
I SALGG + +L + +LD+ L R IL
Sbjct: 563 SELIEAGDKTYALSALGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAA 622
Query: 551 YRDCLRMDGQ-------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE-YL 600
+ ++ TLY L+ CVT GKRLL+ WI PL + + I R + +
Sbjct: 623 LENLEILENARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFK 682
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
E + + L +LPD+ERLL R+
Sbjct: 683 GSGHECAIQFRKDLSRLPDMERLLARL 709
>gi|313114064|ref|ZP_07799616.1| DNA mismatch repair protein MutS [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310623473|gb|EFQ06876.1| DNA mismatch repair protein MutS [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 871
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 242/898 (26%), Positives = 396/898 (44%), Gaps = 190/898 (21%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ ++S +QY +K Q+ D +LF+++G FYE++ DA KELD +T G +
Sbjct: 1 MAELSPMMQQYLEIKKQHKDEILFYRIGDFYEMFFDDALTASKELDLTLTGKQCGMEERA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + V +L+A+GYKV EQ+E +AK ++ R ++ VVTP T ++
Sbjct: 61 PMCGVPFHSYEGYVARLIAKGYKVAICEQVEDPAKAKG-----LVKRDIIRVVTPGTVIE 115
Query: 384 GTIGPD-------AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
++ D ++ L K G C F D + + +N D A+
Sbjct: 116 SSMLQDDRNNYIASIFLKGKKAGLC------------FADVSTGTAHITELNADKIAPAV 163
Query: 437 GALLMQVSPKEVIYENRGL--CKEAQKALRKFSAGSAAL----ELTPAMAVTDFLDASEV 490
L + P EV+ N GL C+E ++K S L P + VT L+
Sbjct: 164 ITELCRYHPSEVLM-NPGLLDCREVTAYIKKNMTCSVELIEEERYAPGL-VTASLE---- 217
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK- 549
N W++ + F A+ L+ +L + V R ++ Y
Sbjct: 218 ----------NQFGRDWAQTTGIAADGLVRF-AMAALLEYLHDTQIKGVERLKTVITYNK 266
Query: 550 --------VYRDCLRMD---------GQTLY-LDSCVTSSGKRLLRSW----------IC 581
V R L + G L+ LD TS GKR+LRSW I
Sbjct: 267 AQFMRLSPVTRANLELTETLRGREKRGTLLWVLDKTSTSMGKRMLRSWIEQPLISSALIN 326
Query: 582 HPLKDVEGINN----RLDVVEYL--MKNSEVVMVVAQYLRKLPD--------LERLLGRV 627
H L VE + R D+ E L + + E +M A Y P +RL G +
Sbjct: 327 HRLNAVESLVKQTMARGDLTEELGYIADMERLMTRAVYGSATPKEIYTLAQTCDRLPG-L 385
Query: 628 KARVQASSCIVLPLIGKKV-----LKQQV------------KVFGSLVKGLRIAMDLLML 670
+ + +A C L + ++ +K ++ K G + KG +D L
Sbjct: 386 RRQAEACGCPELAELAVQIDPLEDIKARIYAAVDPEAPSTLKDGGVIAKGYHAEVDELRS 445
Query: 671 M--HKEGHIIPSLSRIFK----PPIFDGSDGLDKFLTQFEAAIDSDFPD----------- 713
+ + +G + +R+ + P + G + + + + + S P+
Sbjct: 446 IRDNTKGVLAQLEARLRQETGIPKLKIGYNHVFGYFIEVSNSYKSMVPETYIRKQTLTSG 505
Query: 714 --YQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISC--------------IDVLRSF 757
Y ++ +L+++ L L + +SE++ +IS +DVL +
Sbjct: 506 ERYITQELKELESKILGAHERLITLEHRLFSELLESISAQLDRIQRTANAVAQLDVLTAL 565
Query: 758 AVTASMSSGAMHRPLI-------LPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV 810
A A+ ++ RP++ + + ++P V Q +LK G L V
Sbjct: 566 AQVAAENNYC--RPIVDDSDELTITEGRHPVVEQ-----MLK-------------GSLFV 605
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PND L +D CL ++TGPNM GKST +R L ++AQ+G FVP C + + D
Sbjct: 606 PNDTTLNCGADRCL----IITGPNMAGKSTYMRQNALIALMAQIGSFVPASSCHVGVVDA 661
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
IFTR+GA+D + G+STF+VE TE A +L+ AT SLV+LDE+GRGTSTFDG +IA AV
Sbjct: 662 IFTRIGASDDLSAGQSTFMVEMTEVAEILKNATAKSLVVLDEIGRGTSTFDGMSIARAVV 721
Query: 931 RQLVER---INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
+ + + C+ LFATHYH LT+ L+ K+ + K +++ FL
Sbjct: 722 EHIADPAKGLGCKTLFATHYHELTE---------LEGGVDGVKNYNIAVKKRGEDITFLR 772
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
R+ G +SYG++VA +AG+P V A A++ + + K+ ++ +F +L E
Sbjct: 773 RIVRGPADDSYGIEVAKLAGLPGSVTRRAHEVLRALEAT---APKNKVEQMDFDALQE 827
>gi|125605646|gb|EAZ44682.1| hypothetical protein OsJ_29308 [Oryza sativa Japonica Group]
Length = 1293
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/308 (45%), Positives = 187/308 (60%), Gaps = 22/308 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI+LF+E S+W +++ ++ +DVL S A+ + G P+I +S P +
Sbjct: 946 LQNLIQLFVEHHSKWRQLVSVVAELDVLISLAIASDFFEGPTCCPII-KESYGP-----D 999
Query: 787 GGPVLKIKGLWHPFALGEN--GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
P L + L HP ++ G VPNDI +G + ++LTGPNMGGKSTLLR
Sbjct: 1000 DTPTLHARNLGHPTLRSDSLGSGSFVPNDIKMGGPGNASF---IVLTGPNMGGKSTLLRQ 1056
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
CL +ILAQ+G VP E LSL D +F R+GA D IM G+STFLVE ETASVL AT+
Sbjct: 1057 VCLTIILAQIGANVPAESFELSLVDRMFVRMGARDHIMAGQSTFLVELMETASVLSSATK 1116
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
+SLV LDELGRGTST DG AIA +V LV + C LF+THYH L E V+L H
Sbjct: 1117 NSLVALDELGRGTSTSDGQAIAASVLEYLVHHVQCLGLFSTHYHRLAAE-NKDSKVSLCH 1175
Query: 965 MACAFKSNSENYSKGD---QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
MAC SKG+ +E+ FLY+LT G+CP+SYG+ VA +AG+P V++ A+ +
Sbjct: 1176 MACEI-------SKGEGGLEEVTFLYKLTPGSCPKSYGVNVARLAGIPASVLQRANEKSS 1228
Query: 1022 AMKKSIGE 1029
+ S G+
Sbjct: 1229 DFEASYGK 1236
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 213/447 (47%), Gaps = 61/447 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF++L + +DA RRP +P YD RTL +P + L ++ Q+Q+W KSQ+MD +LFFK
Sbjct: 312 KFKFLGEGR-KDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFK 370
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYEL+E+DA +G KELD + C G E + +EKL +GY+V IEQ
Sbjct: 371 MGKFYELFEMDAHVGAKELDLQYMKGDKPHC---GFPEKNFELNLEKLAKKGYRVLVIEQ 427
Query: 353 LETSEQAKARHTNS-----VISRKLVNVVTPSTTVDGT---IGPDAVHLLAIKEG-NCG- 402
ET EQ R + V+ R++ +VT T +G PD +L ++ E CG
Sbjct: 428 TETPEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGS 487
Query: 403 -PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
D G VD + + VG DDA L ++L ++ P E+I + L E +K
Sbjct: 488 EKDQDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKPAKMLSPETEK 547
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA------LENVM 515
AL+ + L P+M +F DA K + ++ Y+ +P + A L ++
Sbjct: 548 ALKSNTRDPLINNLLPSM---EFWDAE--KTIHEIKQYYCSLDTPGAGAQISSAYLPELL 602
Query: 516 QHDI-------GFSALGGLISHLSRLMLDDVL------------------RNGDILPYKV 550
I SALGG + +L + +LD+ L R IL
Sbjct: 603 SELIEAGDKTYALSALGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAA 662
Query: 551 YRDCLRMDGQ-------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE-YL 600
+ ++ TLY L+ CVT GKRLL+ WI PL + + I R + +
Sbjct: 663 LENLEILENARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFK 722
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
E + + L +LPD+ERLL R+
Sbjct: 723 GSGHECAIQFRKDLSRLPDMERLLARL 749
>gi|125563676|gb|EAZ09056.1| hypothetical protein OsI_31317 [Oryza sativa Indica Group]
Length = 1265
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 160/405 (39%), Positives = 227/405 (56%), Gaps = 30/405 (7%)
Query: 634 SSCIVLPLIG---KKVLKQQVKVFG-SLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPI 689
++CI + I KK LK+Q K+ S VK + + D +L E ++ S+ + ++ +
Sbjct: 825 AACIAIEEIESSLKKYLKEQRKLLSDSSVKYVDVGKDTYLLEVSE-NLRGSVPQHYE--L 881
Query: 690 FDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAIS 749
G ++ T + S+ + L L LI+LF+ S+W +++ ++
Sbjct: 882 QSTKKGFYRYWTPEVKELISELSKAEAEKEAKLKC-ILQNLIQLFVGHHSKWRQLVSVVA 940
Query: 750 CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN--GG 807
+DVL S A+ + G P+I +S P + P L + L HP ++ G
Sbjct: 941 ELDVLISLAIASDFFEGPTCCPII-KESYGP-----DDTPTLHARNLGHPTLRSDSLGSG 994
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPNDI +G + ++LTGPNMGGKSTLLR CL +ILAQ+G VP E LSL
Sbjct: 995 SFVPNDIKMGGPGNASF---IVLTGPNMGGKSTLLRQVCLTIILAQIGANVPAESFELSL 1051
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D +F R+GA D IM G+STFLVE ETASVL AT++SLV LDELGRGTST DG AIA
Sbjct: 1052 VDRMFVRMGARDHIMAGQSTFLVELMETASVLSSATKNSLVALDELGRGTSTSDGQAIAA 1111
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD---QELV 984
+V LV R+ C LF+THYH L E V+L HMAC SKG+ +E+
Sbjct: 1112 SVLEYLVHRVQCLGLFSTHYHRLAAE-NKDSKVSLCHMACEI-------SKGEGGLEEVT 1163
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
FLY+LT G+CP+SYG+ VA +AG+P V++ A+ + + S G+
Sbjct: 1164 FLYKLTPGSCPKSYGVNVARLAGIPASVLQRANEKSSDFEASYGK 1208
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 198/447 (44%), Gaps = 79/447 (17%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF++L + +DA RRP +P YD RTL +P SQ+++ L +
Sbjct: 302 KFKFLGEGR-KDAKGRRPGNPNYDPRTLSLP------------------SQFLNSLTGGQ 342
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYEL+E+DA +G KELD + C G E + +EKL +GY+V IEQ
Sbjct: 343 MGKFYELFEMDAHVGAKELDLQYMKGDKPHC---GFPEKNFELNLEKLAKKGYRVLVIEQ 399
Query: 353 LETSEQAKARHTNS-----VISRKLVNVVTPSTTVDGT---IGPDAVHLLAIKEG-NCG- 402
ET EQ R + V+ R++ +VT T +G PD +L ++ E CG
Sbjct: 400 TETPEQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGS 459
Query: 403 -PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
D G VD + + VG DDA L ++L ++ P E+I + L +K
Sbjct: 460 EKDQDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKPAKMLSPGTEK 519
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA------LENVM 515
AL + L P+M +F DA K + ++ Y+ +P + A L ++
Sbjct: 520 ALNSNTRDPLINNLLPSM---EFWDAE--KTIHEIKQYYCSLDTPGAGAQISSAYLPELL 574
Query: 516 QHDI-------GFSALGGLISHLSRLMLDDVL------------------RNGDILPYKV 550
I SALGG + +L + +LD+ L R IL
Sbjct: 575 SELIEAGDKTYALSALGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAA 634
Query: 551 YRDCLRMDGQ-------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE-YL 600
+ ++ TLY L+ CVT GKRLL+ WI PL + + I R + +
Sbjct: 635 LENLEILENARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFK 694
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
E + + L +LPD+ERLL R+
Sbjct: 695 GSGHECAIQFRKDLSRLPDMERLLARL 721
>gi|302799426|ref|XP_002981472.1| hypothetical protein SELMODRAFT_114224 [Selaginella moellendorffii]
gi|300151012|gb|EFJ17660.1| hypothetical protein SELMODRAFT_114224 [Selaginella moellendorffii]
Length = 975
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/339 (42%), Positives = 197/339 (58%), Gaps = 26/339 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L L + F + W I A+S +D L S + G P +P S+
Sbjct: 636 LQTLTKRFCDDHDHWLSAIRAVSELDALMSISSARLHMDGMTCLPTFVPASQL------- 688
Query: 787 GGPVLKIKGLWHPF-ALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
PV + K L HP A+ P VPND++LG S+ P +LLTGPNMGGKSTLLR
Sbjct: 689 AKPVFRAKALRHPIVAVSTAASTPFVPNDVVLGGGSN---PEVMLLTGPNMGGKSTLLRQ 745
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
CL +ILAQ+G VP E LSL D +F R+GA D+IMTG+STFL+E ETA +L+ ATQ
Sbjct: 746 VCLGMILAQIGSEVPAESLELSLTDRLFVRMGAKDQIMTGQSTFLIELLETAVMLRCATQ 805
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
+S V LDELGRGT+T DG AIA+AV L + CR +F++HYH L +FA+ P V+L H
Sbjct: 806 NSFVALDELGRGTATSDGQAIAHAVLHYLAHNVQCRGMFSSHYHKLASDFANDPSVSLCH 865
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
MAC + + + FLY+LTSG+CP+SYG+ VA +AG P+ + +H + +
Sbjct: 866 MACKVGGGNNEL----EAVTFLYKLTSGSCPKSYGVNVARIAGKPK--FPSHAHVSRSFH 919
Query: 1025 KSIGES------FKSSEQRSEFSS-LHE-EWLKTIVNVS 1055
+ ES +S++ E S HE + +KTI++ S
Sbjct: 920 AGMPESVLRRAALQSAKLEKEVESHCHEADVIKTILDAS 958
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 156/538 (28%), Positives = 255/538 (47%), Gaps = 83/538 (15%)
Query: 231 TSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLF 290
+ KF +L ++ +D++ RR D P +D RTL++P E +K ++ Q+Q+W K+++MD +L
Sbjct: 14 SRKFSFLGKNR-KDSSGRRHDWPNFDSRTLFLPAEFVKGLTGGQRQWWEFKAKHMDKVLL 72
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
FK+GKFYE++E+DA +G ++LD + C G E + VEKLV +G++V +
Sbjct: 73 FKMGKFYEMFEMDAHVGAQDLDLQYMKGEQPHC---GFPEKNYFENVEKLVRKGHRVLVV 129
Query: 351 EQLETSEQAKARHTNS-----VISRKLVNVVTPSTTVD-GTIGPDA--VHLLAIKEGNCG 402
EQ ET EQ + R + V+ R++ ++T T VD G I +A L A+ E
Sbjct: 130 EQTETPEQLEERKRKTGSKDKVVRREICAIITKGTMVDSGMISDNAEPSFLAAVTE---K 186
Query: 403 PDN-GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
DN G + G VD + +G + DD++ L ++L ++ P E++ L QK
Sbjct: 187 ADNYGGSLVGLCVVDASRALFMLGQVEDDSARTKLRSILTELRPVELVLPLGLLTDATQK 246
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIG- 520
ALR+ + +L P+ +F DA + K ++ + G+S L+ +++ +
Sbjct: 247 ALREQTRKPLISQLVPS---KEFWDAEQTTKEIRTS---YGASDVMPTVLQKILELGVSS 300
Query: 521 ---FSALGGLISHL------------------------------------SRLMLDD-VL 540
SA GG I +L + ++LD L
Sbjct: 301 EPVLSAFGGCICYLRQSLLDGQLLQLGRFELLPGSDLSFEHSAAIPEAAEAHMVLDSAAL 360
Query: 541 RNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
N +IL +C LD C+T G+RLL+ WI PL ++E I R + V +
Sbjct: 361 DNLEILENS--SNCGVAGTLLCLLDHCITPFGRRLLKQWIVRPLCNIESIVQRQNAVVDM 418
Query: 601 MKNSEVVMVVAQYLRKL---PDLERLLGRVKARV----QASSCIVLPLIGKKVLKQQVKV 653
+E V+++ R+L PDLERLL R+ A + S +VL + K+Q+K
Sbjct: 419 QGVAE--NAVSEFRRELSGIPDLERLLARLSANSGENGRHSQKVVL---YEDAAKKQIK- 472
Query: 654 FGSLVKGLRIAMDLLMLMHKEGHIIPSL--SRIFKPPIF-DGSDGLDKFLTQFEAAID 708
LV LR L+ + G+ +P L +R+ F G L L FE + D
Sbjct: 473 --ELVAALRGFQKLVKAVSCFGNCLPQLKSARLRSLLTFGKGFPDLKPLLQYFEDSFD 528
>gi|297814117|ref|XP_002874942.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp.
lyrata]
gi|297320779|gb|EFH51201.1| hypothetical protein ARALYDRAFT_912022 [Arabidopsis lyrata subsp.
lyrata]
Length = 1326
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 204/354 (57%), Gaps = 25/354 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
LI F E +W +++ A + +DVL S A + G RP+I + + P
Sbjct: 991 LIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVISGSTSDDV-------P 1043
Query: 790 VLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L GL HP G+ G VPN++ +G +LLTGPNMGGKSTLLR CL
Sbjct: 1044 HLSATGLGHPVLRGDTLGRGSFVPNNVKIGGSEKASF---ILLTGPNMGGKSTLLRQVCL 1100
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVILAQ+G VP E +S D I R+GA D IM G+STFL E +ETA +L AT++SL
Sbjct: 1101 AVILAQIGADVPAETFEVSPVDRICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSL 1160
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGT+T DG AIA +V ++++ CR LF+THYH L+ ++ ++P V+L HMAC
Sbjct: 1161 VVLDELGRGTATSDGQAIAESVLEHFIDKVQCRGLFSTHYHRLSVDYQTNPKVSLCHMAC 1220
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A +K
Sbjct: 1221 QVGEG----IGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRA-----VIKSQE 1271
Query: 1028 GESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY 1081
E+ +QR+ + +K I +S V +SD + D+L L H + N++
Sbjct: 1272 FEALYGKKQRTTDHKM-AAMIKQI--ISSVASDSDYSASKDSLSEL-HSMANTF 1321
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 245/499 (49%), Gaps = 79/499 (15%)
Query: 228 ADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDV 287
A + KF +L + RDA RRR D YD RTLY+PP+ +KK++ Q+Q+W KS++MD
Sbjct: 340 ARESEKFRFLGVDR-RDAKRRRSTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKSKHMDK 398
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347
++FFK+GKFYEL+E+DA +G KELD + C G E +EKLV +GY+V
Sbjct: 399 VVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHC---GFPEKNFSVNIEKLVRKGYRV 455
Query: 348 GRIEQLETSEQAKARHTNS-----VISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKE- 398
+EQ ET +Q + R + V+ R++ VVT T DG + PDA +++A+ E
Sbjct: 456 LVVEQTETPDQLEQRRKETGSKDKVVKREICAVVTKGTLTDGEMLLTNPDASYIMALTEG 515
Query: 399 GNCGPDNGSV-VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
G C D + +G VD A ++ +G DD C+AL LL ++ P E+I + L
Sbjct: 516 GECLTDQTAEHNFGVCLVDVATKKIMLGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSS 575
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL---------------NGYFNG 502
++ + + + L P ++F D+ + V + G G
Sbjct: 576 ATERTIVRQTRNPLVNNLVP---FSEFWDSEKTIHEVGIFYKRISCQPSSAYSSEGKIPG 632
Query: 503 SSSPW-SKALENVMQHD----IGFSALGGLISHLSRLMLDD------------------- 538
S + K L + D + SALGG I +L + LD+
Sbjct: 633 DGSSFLPKILSELATEDKNGSLALSALGGAIYYLRQAFLDESLLRFAKFESLPCCDFSNV 692
Query: 539 ------VLRNGDILPYKVYRDCLRMDGQ--TLY--LDSCVTSSGKRLLRSWICHPLKDVE 588
VL + +++ + R G TLY L+ CVT+SGKRLL++W+ PL + E
Sbjct: 693 NEKQHMVLDAAALENLEIFENS-RNGGYSGTLYAQLNQCVTASGKRLLKTWLARPLYNPE 751
Query: 589 GINNRLDVVEYLM-KNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVL 647
I R D V L +N + + L +LPD+ERL+ R+ + ++AS G KV+
Sbjct: 752 LIKERQDAVAILRGENLPYSLEFRKALSRLPDMERLIARMFSSIEASG-----RNGDKVV 806
Query: 648 ------KQQVKVFGSLVKG 660
K++V+ F S ++G
Sbjct: 807 LYEDTAKKEVQEFISTLRG 825
>gi|356572787|ref|XP_003554547.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Glycine max]
Length = 1269
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/338 (42%), Positives = 190/338 (56%), Gaps = 18/338 (5%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
TL LI F E ++W +++ + +DVL S A+ G RP +
Sbjct: 923 TLQRLIGRFCEHHAKWKQLVSTTAELDVLISLAIAGDYYEGPTCRPSFV------GTLCT 976
Query: 786 NGGPVLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
P L K L HP + G VPNDI +G +LLTGPNMGGKSTLLR
Sbjct: 977 KEAPYLHAKSLGHPVLRSDTLGKGDFVPNDITIGGSDHASF---ILLTGPNMGGKSTLLR 1033
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
CL VILAQ+G VP E LS D IF R+GA D IM G+STFL E +ETAS+L AT
Sbjct: 1034 QVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETASMLSSAT 1093
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+SLV LDELGRGT+T DG AIA +V LV ++ CR LF+THYH L ++ P V L
Sbjct: 1094 CNSLVALDELGRGTATSDGQAIAESVLEHLVRKVQCRGLFSTHYHRLAVDYLKDPKVCLC 1153
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
HMAC S G E+ FLYRLT GACP+SYG+ VA +AG+P V++ A+ +
Sbjct: 1154 HMACQVGSG----IAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSREF 1209
Query: 1024 KKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNS 1061
+ + G+ K S + +S ++ W+ I + ++ N+
Sbjct: 1210 EATYGKCRKVS---TVTNSPNKNWVDEIAAIIQILNNA 1244
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 154/442 (34%), Positives = 226/442 (51%), Gaps = 56/442 (12%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYEL 302
RDA RRRP D YD RT+Y+PP+ L+ +S QKQ+W KS++MD +LFFK+GKFYEL+E+
Sbjct: 299 RDAKRRRPGDENYDSRTIYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEM 358
Query: 303 DAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR 362
DA +G KELD + C G E VEKL +GY+V +EQ +T EQ + R
Sbjct: 359 DAHVGAKELDLQYMKGDQPHC---GFPEKNFSMNVEKLARKGYRVLVVEQTDTPEQLELR 415
Query: 363 H-----TNSVISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKEG--NCGPDNGSVVYGF 412
+ V+ R++ +VVT T DG + P+A +L+A+ E N + +YG
Sbjct: 416 RKEKGSKDKVVRREICSVVTKGTLTDGELLSANPEAAYLMALTEHHENHPTEVSEHLYGV 475
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
VD A RV +G DD C+ L +L ++ P E++ + L E ++ L K +
Sbjct: 476 CIVDVATSRVILGQFKDDLECSVLCCILSEIRPVEIVKPAKLLSAETERVLLKHTRDPLV 535
Query: 473 LELTPAMAVTDFLDASE-VKKLVQLNGYFNGSSSPWSK-------ALENVMQHD---IGF 521
EL P + +F DA + V +L ++ G N S ++ LE V D
Sbjct: 536 NELVP---IVEFWDADKTVDQLKRIYGNSNDVSVNNNELDCLPDVLLELVKTGDDSRSAL 592
Query: 522 SALGGLISHLSRLMLDDVLRN------------GDIL--PY-----------KVYRDCLR 556
SALGG + +L + LD+ L GD+ PY +++ +
Sbjct: 593 SALGGALYYLRQAFLDERLLRFAKFELLPCSGFGDLASKPYMVLDAAALENLEIFENSRN 652
Query: 557 MDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK-NSEVVMVVAQ 612
D TLY L+ CVT+ GKRLL++W+ PL VE + R + V L N + +
Sbjct: 653 GDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESVKERQEAVAGLKGVNLPSALEFRK 712
Query: 613 YLRKLPDLERLLGRVKARVQAS 634
L KLPD+ERLL R+ + +AS
Sbjct: 713 ALYKLPDMERLLARIFSSSEAS 734
>gi|242011381|ref|XP_002426429.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510534|gb|EEB13691.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 1265
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 173/292 (59%), Gaps = 15/292 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F +K W I +S +D L S A S+ G M LP+ P + N P + I
Sbjct: 957 FSDKYENWITAIQCVSLLDALMSLAEYCSLEPGEM----CLPEFSEPQI---NNKPFIDI 1009
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
HP ENG +PNDI LG +S +LLTGPNMGGKSTL+R L I+AQ
Sbjct: 1010 ANGRHPCLSVENGF--IPNDIKLGTNS---FSNLVLLTGPNMGGKSTLMRQLGLITIMAQ 1064
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G VP E C L D IFTR+GA D I+ GESTF VE +E + +L ATQ SL ++DEL
Sbjct: 1065 MGLKVPAETCKLIPIDRIFTRIGAKDDILAGESTFYVELSEASMILNNATQFSLALIDEL 1124
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIAY+V ++L R CR LF+THYH L +F VTL HMAC +++
Sbjct: 1125 GRGTSTYDGTAIAYSVVKELSHR-GCRTLFSTHYHILIDDFKESDSVTLGHMACMVETDE 1183
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
E+ S ++ + FLY+ GACP+SYG A +AG+P +++AA ++K
Sbjct: 1184 EDPS--EETVTFLYKFVDGACPKSYGFNAAKLAGIPINIIKAARKKTALLEK 1233
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 154/551 (27%), Positives = 241/551 (43%), Gaps = 90/551 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF +L P I D +RRPD P YDK+TLY+P + K + + +Q+W +KS + D +LFFK
Sbjct: 296 KFSFLQPENIMDKKKRRPDHPDYDKKTLYVPEDFKAKATPAVRQWWELKSDHYDCILFFK 355
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL G G E LV +GYKV R+EQ
Sbjct: 356 VGKFYELYHMDAVIGVNELSLTFM---KGDFAHSGFPEISYGRFSTILVQKGYKVARVEQ 412
Query: 353 LETSE--------QAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEG 399
ET E Q+K + V++R++ V T T + I +A +L A+ E
Sbjct: 413 TETPEMMTERCKHQSKVTKFDKVVNREICQVTTKGTQIFSFIDGEAKEYETNYLFALAEK 472
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
++G++ +G F+D + +G NDD + L +L P +++YE L +
Sbjct: 473 T--DNSGNIAFGVCFIDTSIGTFHLGQFNDDKFLSRLRIVLSHHPPVQILYEKYQLSGKT 530
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQ 516
+ L+ A ++ L+ P A T+F AS+ + +F N + + W A++ +
Sbjct: 531 MQLLK--CAFNSVLQ-EPLAAETEFWSASKTLSTLAEENHFTKPNENGTKWPDAIKKFLN 587
Query: 517 H------------DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC---------- 554
++ ALG + +L + LD L + +++Y
Sbjct: 588 PADSLGLSPSEDGELAIKALGACVWYLKQCFLDQQLLA--MQKFEIYTPINKISEVNFET 645
Query: 555 -----------LRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPL 584
+ +D TL LD C T +GKRLLR WIC PL
Sbjct: 646 NMATSVDLGRYMILDSLTLENLEVINNSNGEKHGTLLEKLDHCCTFTGKRLLRQWICTPL 705
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP---- 640
+ GI +R + L + V+ + L+ +PDLERLLG++ + A P
Sbjct: 706 CSISGITSRQKAIIELSEKG-VIKKIKSMLKGVPDLERLLGKIHTQGNAIRSKTHPDSRA 764
Query: 641 --LIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSR---IFKP--PIFDGS 693
K K+++ F S + G +L+ + E L R +F P D S
Sbjct: 765 IFFEDKLYSKRKILDFLSALTGFEKVQNLIETLQNEFEWDSELLRQCLLFSPNGKFKDLS 824
Query: 694 DGLDKFLTQFE 704
+ L+ F F+
Sbjct: 825 EDLNFFKNAFD 835
>gi|392574726|gb|EIW67861.1| hypothetical protein TREMEDRAFT_40008 [Tremella mesenterica DSM
1558]
Length = 959
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 227/453 (50%), Gaps = 56/453 (12%)
Query: 221 VKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNV 280
++ + + D +++L P ++DA RRP DP YD RTLYIP E + + ++Q+W +
Sbjct: 9 IEATQAKRDAEESYKFLLPENLKDAEGRRPSDPDYDGRTLYIPKEDWRGFTPFERQFWEI 68
Query: 281 KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKL 340
K + D +LFF+ GKF+ELYE DA+IGH + D K+T K + VG+ E D+ K
Sbjct: 69 KQNHYDTVLFFQKGKFFELYEGDAQIGHDQFDLKLTKR--VKMQMVGVPEQSFDEFAAKF 126
Query: 341 VARGYKVGRIEQLETSEQAKARHT----------NSVISRKLVNVVTPSTTVDGTI--GP 388
+A GYKVG++EQ+ET+ A+ R + ++ R+L + T T VDG
Sbjct: 127 LAHGYKVGKVEQVETAIGAELRRNAGKGSSTLKEDKIVQRELAQIFTNGTIVDGAYLSTH 186
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
++ H +A+KE P NG+VVYG +D + + + DD LG L Q+ PKE+
Sbjct: 187 ESNHCVAVKE-QVDP-NGTVVYGVCVLDASTGEFQLTALEDDVLRTKLGTLFRQIRPKEL 244
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA----------SEVKKLVQLNG 498
++ L + LR S P + DF D E+ KL ++ G
Sbjct: 245 LHAKGNLSSPTLRLLRNISP--------PNVLWQDFKDGVEFYPVAKTLEELGKLFEVEG 296
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CL 555
+ A++ ++ + ALGG++ +L L LD D++ G+ + R+ L
Sbjct: 297 DLADMKATLPNAIKTMLNEPLAIEALGGMLFYLRSLNLDKDLVSQGNFTIFDPTREGKVL 356
Query: 556 RMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
+DGQ+L L +CVT SGKRL R WI PL +V IN+RLD
Sbjct: 357 ILDGQSLGHMEILINNEGGHEGTLLSLLQNCVTPSGKRLFRMWITAPLCEVRAINDRLDA 416
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
V+ +M + + + + LPDLERL+ R A
Sbjct: 417 VDDIMHHPDFAGMFTSSFKNLPDLERLVSRAHA 449
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 157/309 (50%), Gaps = 32/309 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ F + +W + ++ +D L S A +S RP+ + ++
Sbjct: 629 LLQKFDQSRREWLNAVKTVAELDCLVSLAKASSNMDEPKCRPVFI----------NSPEA 678
Query: 790 VLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ L HP L + + ND+ LG+ PRT+LLTGPNM GKSTLLR T A
Sbjct: 679 FIDFTELRHPSMCLRADF---IANDVRLGKSE----PRTVLLTGPNMAGKSTLLRMTASA 731
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQLGC+VP LS D I TR+GA D + ST+ VE E + +L++A SLV
Sbjct: 732 VIMAQLGCYVPSASATLSPIDRIQTRMGAYDNMFASASTYKVELDECSKILREAGPKSLV 791
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTST DG AIA AV L FATHY L EF HP++ HM
Sbjct: 792 ILDELGRGTSTHDGMAIAMAVLHHLATHTLPLGFFATHYGLLADEFLYHPNIRNMHMQTH 851
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
+ ++VFLY+L G S+G VA MAGVP VV A +K
Sbjct: 852 VDEDL-------LQVVFLYKLIPGVAESSHGTHVAHMAGVPTSVVTRA-------QKVSA 897
Query: 1029 ESFKSSEQR 1037
E F +++R
Sbjct: 898 EFFDDTKKR 906
>gi|281206806|gb|EFA80990.1| Muts-like protein [Polysphondylium pallidum PN500]
Length = 1231
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/294 (43%), Positives = 175/294 (59%), Gaps = 20/294 (6%)
Query: 732 ELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
E F AS W + +++ ID + S A + ++ RP I V D+ +L
Sbjct: 914 EQFNVNASAWCQATASLAQIDCILSLAKVSHLAGITTCRPEI--------VISDHA--LL 963
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
K + HP + G +PNDI LG D P ++LTGPNMGGKSTLLR C+ VI+
Sbjct: 964 DAKEMRHPAITLKGGDDFIPNDITLGIDQQ---PGVMVLTGPNMGGKSTLLRQCCILVIM 1020
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQLGC+VP C LS+ D IFTRLGA D IM G+STF++E ET++VL+ AT+ SLVI+D
Sbjct: 1021 AQLGCYVPAASCRLSIVDRIFTRLGANDNIMAGQSTFMLELQETSNVLKYATKRSLVIMD 1080
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
ELGRGTSTFDGY+IA++V + +INC +FATHY L E + HM+C
Sbjct: 1081 ELGRGTSTFDGYSIAFSVLDYISNKINCMCIFATHYQSLAHEPKVAKAIQKSHMSCYV-- 1138
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+++++FLY+LT G CP SYG+ V MAG+P +V+ A A +K
Sbjct: 1139 -----DDVEKKVIFLYKLTEGVCPASYGMLVGGMAGIPSEVIAKAEEKAEQFEK 1187
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 129/426 (30%), Positives = 215/426 (50%), Gaps = 54/426 (12%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I DAN+ + +P YD TLYIP L + ++QYW++KS+ D ++FFK GKFYELYE
Sbjct: 324 IADANQIKKGEPNYDPSTLYIPSTFLVNFTPFERQYWDIKSKNYDKIVFFKKGKFYELYE 383
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLET------ 355
DA++GH+ D K+T R VG+ E +K + GY++ +++Q+E+
Sbjct: 384 DDADLGHQLFDLKMT--DRVNMRMVGVPEKSFQQWAKKFLEAGYRITKVDQVESRLAMDK 441
Query: 356 --SEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYG 411
+++ + ++I R++ +++T T VD ++ D+ +L++IKE D+ G
Sbjct: 442 RQNQKGASTSKETIIQREVTSILTIGTLVDDSLLLDSTSNYLMSIKE-----DDYKQELG 496
Query: 412 FAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA 471
F+D + ++ DD + + L LL+Q PKE++Y+ + + +++ +
Sbjct: 497 ICFLDSSVGLFYLTEFKDDENRSHLETLLLQTMPKEILYDKSSISQTTLNVIKRVLSREK 556
Query: 472 ALELT---PAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKAL-ENV-MQHDIGFSALGG 526
+ T TDF + KL ++ + K L +N+ ++H + ALGG
Sbjct: 557 YILTTRQPTEFWSTDF----TLGKLEEMQ-----KADDLKKVLGDNIEVEHSLLGYALGG 607
Query: 527 LISHLSRL-MLDDVLRNGDILPYKVY--RDCLRMDGQTL--------------------Y 563
+L + M D V + Y L +DGQ+L
Sbjct: 608 CCCYLEDIKMADQVTKQARFEMYNTLDGTSSLVLDGQSLVNLEIFANTTDGSTNGSLFKV 667
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD C T GKRLL+ W+C PL E IN RLD V+YL +N E++ ++ L ++PDLER+
Sbjct: 668 LDRCSTPFGKRLLKQWVCRPLSSREKINERLDAVQYLGENQELMSKLSTMLTRVPDLERM 727
Query: 624 LGRVKA 629
L R+KA
Sbjct: 728 LSRIKA 733
>gi|440636963|gb|ELR06882.1| hypothetical protein GMDG_08173 [Geomyces destructans 20631-21]
Length = 1123
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 166/538 (30%), Positives = 260/538 (48%), Gaps = 55/538 (10%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
K +++ ++ WL + + D +R PD P YD RT+YIPP A SA +KQYW +K
Sbjct: 182 KQKPSKSEPEHRYTWL--ANLLDMDRNPPDHPDYDPRTVYIPPNAWTGFSAFEKQYWQIK 239
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
++ + ++FFK GKFYELYE DA IGH+ D K+T R VG+ ES +D + V
Sbjct: 240 QKFWNTIVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDHWANQFV 297
Query: 342 ARGYKVGRIEQLETS------------EQAKARHTNSVISRKLVNVVTPSTTVDGTI--G 387
A+GYK+ R++Q+E++ AKA+ + +I R+L V+T T V+G++ G
Sbjct: 298 AKGYKIARVDQMESALGKEMREREDSVGGAKAKKVDKIIHRELACVLTKGTLVEGSMLEG 357
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
A + +AIKE D+ +G AFVD A + ++ DD + Q P+E
Sbjct: 358 DMATYCVAIKETTMTADDLP-TFGIAFVDTATGQFFLSEFVDDVDLTKFETFVAQTRPQE 416
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAV-TDFLDASEVKKLVQLNGYF----NG 502
++ E + + KALR + ++ + + +F A K+ + +GYF G
Sbjct: 417 LLLEKSCI---SVKALRILKSNTSPTTIWNYLKTGKEFWGADVTKRELDCSGYFLTKEPG 473
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDG 559
+ W L +I SA G L+ +L L LD D+L + Y + L +DG
Sbjct: 474 ADEEWPATLMEAKDKEIIMSAFGALVQYLRSLKLDRDLLSQRNFAWYSPIQKSTTLVLDG 533
Query: 560 QTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
QTL L+ C+T GKR+ R W+CHPL D + IN RLD V+
Sbjct: 534 QTLINLEIFANTYDSGQAGTLFKMLNRCITPFGKRMFRQWVCHPLADAKKINERLDAVDM 593
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
L +S + + ++PDLERL+ R+ A V V L G + ++ + + G+
Sbjct: 594 LNADSTLREQFTGQMTRMPDLERLISRIHAGVCRPDDFVRVLEGFEQIEYTMSILGAFGG 653
Query: 660 GLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
G I L+ M ++ L + FD + D+ L E I+ DF D ++
Sbjct: 654 GDGIIDRLISGMP---DLVGPLE--YWKTAFDRTKARDERLLVPERGIEEDFDDSEDR 706
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 154/295 (52%), Gaps = 22/295 (7%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T + F + + W ++ I+ +D L S A ++ RP + D
Sbjct: 794 TAGRFFQRFDKGYTTWLTAVNIIAQLDCLISLARASAGLGSPSCRPTFV----------D 843
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
++ L HP L +PN I LG P LLTG N GKST+LR T
Sbjct: 844 TERTIVDFTELRHPCVLPNVTDF-IPNSIRLG----GAEPNINLLTGANAAGKSTILRMT 898
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
C+A I+AQ+GC+VP E L+ D I +RLGA D I +STF +E +ET +L +AT
Sbjct: 899 CIAAIMAQIGCYVPAESATLTPIDRIMSRLGANDNIFAAQSTFFLELSETKKILAEATPR 958
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SLVILDELGRGTS++DG A+A AV + + FATHYH L EFA HP + + M
Sbjct: 959 SLVILDELGRGTSSYDGVAVAQAVLHHVATHVGAIGFFATHYHSLAAEFAGHPEIAPRRM 1018
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
A N + ++ + FLYRL G S+G+ A M G+P+KVVE A AA
Sbjct: 1019 AI-------NVDEAERRVTFLYRLEEGVAQGSFGMHCASMCGIPRKVVERAEVAA 1066
>gi|336273106|ref|XP_003351308.1| MSH6 protein [Sordaria macrospora k-hell]
gi|380092828|emb|CCC09581.1| putative MSH6 protein [Sordaria macrospora k-hell]
Length = 1230
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 227/433 (52%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I+DANR RP P YD ++Y+PP A ++ S + QYW +K D ++FFK
Sbjct: 308 RYPWL--ADIQDANRNRPGHPDYDPGSVYVPPSAWRQFSPFETQYWEIKKNLWDTVVFFK 365
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES ++ V + VA+GYKV R++Q
Sbjct: 366 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLEMWVNQFVAKGYKVARVDQ 423
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ KA+ + +I R+L ++T T VDG++ D AV+ AIKE
Sbjct: 424 MESALGKEMRERDTKAKKADKIIRRELACILTGGTLVDGSMLQDDNAVYCAAIKESVI-- 481
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + ++ DD + Q SP+E+I E L + KAL
Sbjct: 482 -DDKPAFGIAFVDAATGQFFISEFEDDVDLTKFETFVAQTSPRELILEKSHL---STKAL 537
Query: 464 RKFSAGSAALELTPAMAV-TDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDI 519
R +A + + + T+F +A ++ + +GYF G W + L+ D+
Sbjct: 538 RILKNNTAPTTIWNYLKMGTEFWEADTTRRELDCSGYFVSGEGQDEVWPEKLKEARGKDL 597
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL-------------- 562
SALG L +L L ++ ++L G+ Y ++R+ L +DGQ+L
Sbjct: 598 LMSALGALTQYLRMLKIERNLLSQGNFAWYNPIHRNGTLILDGQSLINLEIFANTANGGP 657
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL R W+CHPL +++ +N RLD V+ L + + + K
Sbjct: 658 EGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDRSFQEQFSSQMSK 717
Query: 617 LPDLERLLGRVKA 629
+ DLERL+ R+ A
Sbjct: 718 MADLERLISRIHA 730
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 157/296 (53%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S + F W + I IS +D L S A +S RP+ +
Sbjct: 898 EVASKFFKRFDLDYETWLQAIRIISQLDCLISLAKASSALGQPCCRPVFV---------- 947
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ V++ L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 948 DDERTVVEFNELRHPCMLNTVDDF-IPNDIKLGGDEANID----LLTGANAAGKSTILRM 1002
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+C+AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1003 SCIAVIMAQIGCYVPAMSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1062
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I C FATHYH L EF +HP + +
Sbjct: 1063 RSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEIRAKR 1122
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + EN + + FLY+L G S+G+ A M G+P KV+ + AA
Sbjct: 1123 M--QIEVDEEN-----KRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIRRSEVAA 1171
>gi|302773165|ref|XP_002970000.1| hypothetical protein SELMODRAFT_410679 [Selaginella moellendorffii]
gi|300162511|gb|EFJ29124.1| hypothetical protein SELMODRAFT_410679 [Selaginella moellendorffii]
Length = 1232
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 172/286 (60%), Gaps = 22/286 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L L + F + W I A+S +D L S + G P +P S+
Sbjct: 870 LQTLTKRFCDDHDHWLSAIRAVSELDALMSISSARLHMDGMTCLPTFVPASQL------- 922
Query: 787 GGPVLKIKGLWHPF-ALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
PV + K L HP A+ P VPND++LG S+ P +LLTGPNMGGKSTLLR
Sbjct: 923 AKPVFRAKALRHPIVAVSTAASTPFVPNDVVLGGGSN---PEVMLLTGPNMGGKSTLLRQ 979
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
CL +ILAQ+G VP E LSL D +F R+GA D+IMTG+STFL+E ETA +L+ ATQ
Sbjct: 980 VCLGMILAQIGSEVPAESLELSLTDRLFVRMGAKDQIMTGQSTFLIELLETAVMLRCATQ 1039
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
+S V LDELGRGT+T DG AIA+AV L + CR +F++HYH L +FA+ P V+L H
Sbjct: 1040 NSFVALDELGRGTATSDGQAIAHAVLHYLAHNVQCRGMFSSHYHKLASDFANDPSVSLCH 1099
Query: 965 MACAFKSNSENYSKGDQEL---VFLYRLTSGACPESYGLQVAVMAG 1007
MAC G+ EL FLY+LTSG+CP+SYG+ VA +AG
Sbjct: 1100 MAC-------KVGGGNNELEAVTFLYKLTSGSCPKSYGVNVARIAG 1138
Score = 176 bits (446), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 158/537 (29%), Positives = 256/537 (47%), Gaps = 79/537 (14%)
Query: 231 TSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLF 290
+ KF +L ++ +D++ RR D P +D RTL++P E +K ++ Q+Q+W K+++MD +L
Sbjct: 246 SRKFSFLGKNR-KDSSGRRHDWPNFDSRTLFLPAEFVKGLTGGQRQWWEFKAKHMDKVLL 304
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
FK+GKFYE++E+DA +G ++LD + C G E + VEKLV +G++V +
Sbjct: 305 FKMGKFYEMFEMDAHVGAQDLDLQYMKGEQPHC---GFPEKNYFENVEKLVRKGHRVLVV 361
Query: 351 EQLETSEQAKARH-----TNSVISRKLVNVVTPSTTVD-GTIGPDA--VHLLAIKEGNCG 402
EQ ET EQ + R + V+ R++ ++T T VD G I +A L A+ E
Sbjct: 362 EQTETPEQLEERKRKTGSKDKVVRREICAIITKGTMVDSGMISDNAEPSFLAAVTE---K 418
Query: 403 PDN-GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
DN GS + G VD + +G + DD++ L ++L ++ P E++ L QK
Sbjct: 419 ADNYGSSLVGLCVVDASRALFMLGQVEDDSARTKLRSILTELRPVELVLPLGLLTDATQK 478
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN-GYFNGSSSPWSKALENVMQHDIG 520
ALR+ + +L P+ +F DA + K ++ + G + + K LE + +
Sbjct: 479 ALREQTRKPLISQLVPS---KEFWDAEQTTKEIRTSYGASDAMPTVLQKILELGVSSEPV 535
Query: 521 FSALGGLISHL--------------------------------------SRLMLDD-VLR 541
SA GG I +L + ++LD L
Sbjct: 536 LSAFGGCICYLRQSLLDGQLLQLGRFELLPGSDLSFEHSAAIPEADPAEAHMVLDSAALD 595
Query: 542 NGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
N +IL + +C LD C+T G+RLL+ WI PL ++E I R + V +
Sbjct: 596 NLEIL--ENSSNCGVAGTLLCLLDHCITPFGRRLLKQWIVRPLCNIESIVQRQNAVVDMQ 653
Query: 602 KNSEVVMVVAQYLRKL---PDLERLLGRVKARV----QASSCIVLPLIGKKVLKQQVKVF 654
+E V+++ R+L PDLERLL R+ A + S +VL + K+Q+K
Sbjct: 654 GVAE--NAVSEFRRELFGIPDLERLLARLSANSGENGRHSQKVVL---YEDAAKKQIK-- 706
Query: 655 GSLVKGLRIAMDLLMLMHKEGHIIPSL--SRIFKPPIF-DGSDGLDKFLTQFEAAID 708
LV LR L+ + G+ +P L +R+ F G L L FE + D
Sbjct: 707 -ELVAALRGFQKLVKAVSCFGNCLPQLKSARLRSLLTFGKGFPDLKPLLQYFEDSFD 762
>gi|326498831|dbj|BAK02401.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1331
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/307 (45%), Positives = 182/307 (59%), Gaps = 20/307 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI LFIE S+W ++ + IDVL S A+ G P P + D
Sbjct: 984 LQKLIHLFIEHHSKWRRLVSVAAEIDVLVSLAIAGDYFEG----PTCCPTIRELCGPDDT 1039
Query: 787 GGPVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
P + L HP +LG+ G VPN+I +G + ++LTGPNMGGKSTLL
Sbjct: 1040 --PTFHARNLGHPIIRSDSLGK--GSFVPNNINMGGPGNASF---IILTGPNMGGKSTLL 1092
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CL +ILAQ+G VP E LSL D IF R+GA D IM G+STFLVE ETASVL A
Sbjct: 1093 RQVCLTIILAQIGANVPAENLELSLVDRIFVRMGARDHIMAGKSTFLVELMETASVLSSA 1152
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV LDELGRGTST DG AIA +V LV R+ C LF+THYH L E V+L
Sbjct: 1153 TKNSLVALDELGRGTSTSDGQAIAASVLDYLVHRVQCLGLFSTHYHKLAVEHEDG-KVSL 1211
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HMAC + G +E+ FLYRLT+G+CP+SYG+ VA +AG+P V++ A+ ++
Sbjct: 1212 CHMACQVGTG----EGGLEEVTFLYRLTAGSCPKSYGVNVARLAGIPASVLQRANEKSID 1267
Query: 1023 MKKSIGE 1029
+ + G+
Sbjct: 1268 FEANYGK 1274
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 142/479 (29%), Positives = 230/479 (48%), Gaps = 73/479 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF +L + +DA +RP DP YD RTL++PP+ LK ++ Q+Q+W KSQ+MD +LFFK
Sbjct: 347 KFTFLGQGR-KDAKGKRPGDPAYDPRTLFLPPQFLKNLTGGQRQWWEFKSQHMDKVLFFK 405
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYELYE+DA +G KEL+ + C G E + +EKL +GY+V +EQ
Sbjct: 406 MGKFYELYEMDAHVGTKELNLQYMKGDQPHC---GFPEKNLAVNLEKLAQKGYRVLVVEQ 462
Query: 353 LETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGT---IGPDAVHLLAIKE----GN 400
ET +Q R + V+ R++ +VT T +G PD ++L++ E +
Sbjct: 463 TETPDQLDLRRRETGTKDKVVRREICAMVTKGTLTEGESLLANPDPSYILSVVESYPCSS 522
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+G + G +D + + +G DD L ++L ++ P E+I + L E +
Sbjct: 523 TKSQDGHTI-GVCIIDVSTSKFIIGQFQDDPERHVLCSILSEIRPVEIIKPAKMLSAETE 581
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV-MQHDI 519
+AL+ + L P+ T+F DA +K + + + SS+ + + V +Q+++
Sbjct: 582 RALKNNTRDPLINGLLPS---TEFWDA---EKTIHVIEQYYSSSNNLTMSRNTVGVQNNV 635
Query: 520 G------------------FSALGGLISHLSRLMLDD----------------------- 538
G SALGG + +L +++LDD
Sbjct: 636 GCLPDLLGELIEAGDRAYALSALGGSLFYLKQILLDDKLLPCAKFEPLTCSGLINNMQKH 695
Query: 539 -VLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
+L + ++ + TLY L+ CVT GKRLL+ WI PL D E I R
Sbjct: 696 MILDAAALENLEILENATGGLSGTLYEQLNHCVTGFGKRLLKRWIVRPLYDREAILQRQG 755
Query: 596 VVEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKARV----QASSCIVLPLIGKKVLKQ 649
+ E M + L +LPD+ERLL + +R ++ S I+ K++L+Q
Sbjct: 756 AIAIFKGVGHECAMQFRKDLCRLPDMERLLAHLFSRCGENGRSKSVILYEDTAKRLLQQ 814
>gi|452989141|gb|EME88896.1| hypothetical protein MYCFIDRAFT_25225 [Pseudocercospora fijiensis
CIRAD86]
Length = 1117
Score = 239 bits (609), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 170/535 (31%), Positives = 254/535 (47%), Gaps = 70/535 (13%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
D ++ WL + I+DA+R PD P YD RTLY+PP A S +KQYW +K ++ D +
Sbjct: 183 DPADRYPWL--AAIQDADRHTPDHPDYDPRTLYVPPGAWNNFSPFEKQYWEIKCKFWDTI 240
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D + VA+G+K+
Sbjct: 241 VFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEASLDHWANQFVAKGFKIA 298
Query: 349 RIEQLETSEQAKARHTNS----------VISRKLVNVVTPSTTVDGTIGPD--AVHLLAI 396
R++Q+ET+ R + VI R+L +V+T T V+G++ D A + AI
Sbjct: 299 RVDQMETALGKDMRERDQKGAAKKKEEKVIRRELASVLTAGTLVEGSMLQDDMATYCAAI 358
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE G +G AFVD A + + DDA + Q P E+I E +
Sbjct: 359 KETES---EGKPAFGIAFVDTATAQFHLAEWVDDADMTRFETFVAQTRPGELILEKGCIS 415
Query: 457 KEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF-----NGSSSPWSKA 510
A + L+ + + L P +FL A + + + YF + ++ W K
Sbjct: 416 ARALRILKNNTPPTTIWNYLKPD---KEFLSADKTRMKMNGEAYFVKSEDDEAADSWPKV 472
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----- 562
L + FSA G L+ +LS L ++ D++ + Y R L +DGQ+L
Sbjct: 473 LREAETKENTFSAYGALVWYLSMLKIERDLITCANFSWYNPIRKASSLVLDGQSLINLEI 532
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
L+ CVT SGKR LR W+CHPL D IN R D V+ L + V+
Sbjct: 533 FANTFDGSTEGTLFTMLNRCVTPSGKRTLRQWVCHPLADARKINERFDAVDALNADGTVM 592
Query: 608 MVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIAM 665
L +LPDLERL+ +RV A C V + KVL+ +Q++ SL+
Sbjct: 593 DRFTASLSRLPDLERLI----SRVHAGRCKVQDFV--KVLEGFEQIEYTMSLLSSFGDGE 646
Query: 666 DLLMLMHKEGHIIPSLSRIFKP-----PIFDGSDGLDKFLTQFEAAIDSDFPDYQ 715
LL G +I ++ + P FD ++ L + ++ DF + Q
Sbjct: 647 GLL------GQLISAMPNLQTPLNHWKEAFDRKQAKEQGLLIPQPGVEDDFDESQ 695
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 156/287 (54%), Gaps = 21/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E + W I I +D L S A AS S G+ P + + D+ VL+
Sbjct: 793 FDEDYTTWLAAIKIIGQLDCLISLA-KASSSLGS-------PSCRPEFIEDDHARSVLEF 844
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP E +PNDI LG D LLTG N GKST+LR TC+AVILAQ
Sbjct: 845 QTLRHPCI--ETTTNFIPNDIALGGDQ----ASITLLTGANAAGKSTILRMTCIAVILAQ 898
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE ++ D I +RLGA D I G+STF+VE +ET +L +AT SLVILDEL
Sbjct: 899 IGCYVPCESARMTPVDRIMSRLGAHDNIFAGQSTFMVELSETKKILAEATPRSLVILDEL 958
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + + FATHYH L EF HP V + MA +
Sbjct: 959 GRGTSSYDGVAVAQAVLHHIATHVGSLGYFATHYHSLAAEFQKHPEVIAKRMAVKVDDDI 1018
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+++ FLY L G SYG+ A M G+P KV+ A AA
Sbjct: 1019 -------RDVTFLYHLEDGVAEGSYGMHCAAMCGIPDKVITRAEQAA 1058
>gi|397581604|gb|EJK51986.1| hypothetical protein THAOC_28787, partial [Thalassiosira oceanica]
Length = 1721
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/330 (42%), Positives = 188/330 (56%), Gaps = 32/330 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL--PQS 777
T E + ++ F + W HA + +D L S A A RPLI+ P +
Sbjct: 1356 TSRKTEGMRLIFAKFDSMRNHWMASCHATAMLDALGSLAQLAGQP--GFSRPLIMDCPIN 1413
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLG-----ED---SDDCLPR-- 826
P + G HP + G +PND++LG ED DD PR
Sbjct: 1414 SKPGIEVIQG---------RHPCVDRTHSGADFIPNDLVLGARFENEDDAFGDDSAPRDE 1464
Query: 827 --TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
LLL+GPNMGGKSTLLR TCL I+AQ+G +VP E C L+ D IFTRLGA+DRI+ G
Sbjct: 1465 ASVLLLSGPNMGGKSTLLRQTCLISIMAQIGSYVPAERCSLTPVDRIFTRLGASDRILCG 1524
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
+STF VE ETA+ ++ +T+ SLVI+DELGRGTSTFDG AIA A + LVE+ C LFA
Sbjct: 1525 QSTFFVELAETAAAVRGSTRRSLVIMDELGRGTSTFDGTAIASATVKHLVEKNQCLTLFA 1584
Query: 945 THYHPLTKEFASHPHVTLQHMACAF-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
THYH L +++ P + L HM C +SEN + + FLY L GACP+S+G+ VA
Sbjct: 1585 THYHSLLEDWKDEPSIRLGHMECVVDDGDSENTNN----ITFLYTLGEGACPKSFGVNVA 1640
Query: 1004 VMAGVPQKVVEAASHAALAMKKSI-GESFK 1032
+AG+P V++ A + +K + GES +
Sbjct: 1641 RLAGLPSDVLQKAKIISEQFEKEMKGESLQ 1670
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 109/241 (45%), Gaps = 42/241 (17%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEALKKM-----SASQKQYWNVKSQYMDVLLFFKVGKFY 297
RD R P + RTL+I L+++ +A+QKQ+W +KSQY D +L FK GKFY
Sbjct: 587 RDLQRNSAGHPNFSTRTLHIDWTELERVNGKAATAAQKQWWEIKSQYADTVLLFKTGKFY 646
Query: 298 ELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE 357
E++ D+++G L + GK G E+ V LV RGY+V R+EQ ET +
Sbjct: 647 EMFHDDSDVGVAHLGM---VYMKGKDGHAGFPEAAYGKYVAMLVERGYRVARVEQTETPD 703
Query: 358 QAKARHTNS------VISRKLVNVVTPSTTV--------------DGTIGPDAVHLLAIK 397
K R + V++R++ VV+ T T GP L+AIK
Sbjct: 704 ALKERKKRTKGKKPGVVNREVCGVVSKGTRTFCYLDDTSLIEKGGGATTGP----LIAIK 759
Query: 398 E----------GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
E G+ G N YG VD V +G DD + + L+ +P E
Sbjct: 760 EVTIDGGDSKGGDEGAANAVCEYGVTIVDAITGVVTLGQFADDVLRSRIQTLVASFNPSE 819
Query: 448 V 448
V
Sbjct: 820 V 820
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 558 DGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYL 614
DG L +D + G RLLR+W+ PL E I+ R DVV+ L + V + + L
Sbjct: 1069 DGSLLSKIDFTRSPHGARLLRAWLLRPLFRKEDIDRRADVVQELSSGAAAVAMCEARELL 1128
Query: 615 RKLPDLERLLGRVKAR-------VQASSCIVLP------LIGKKVLKQQVKVFGSLVKGL 661
RK D+ERLL RV + A++ LP +K K++V F L+ GL
Sbjct: 1129 RKTNDIERLLSRVHSMGGSISSDGSANNISYLPEERAVLYESEKHTKRKVGDFSKLLNGL 1188
Query: 662 RIAMDLLMLMHKEGHIIPSLSRIFKPPIFDG------SDGLDKFLTQFEA--AIDSDFPD 713
+ A ++ L P L++I K G + LD F F+ A DF
Sbjct: 1189 KAASEIPSLFANTEVESPMLAKIVKTTEDGGCFPAQMREKLDYFFDNFDVKKAAKGDFEP 1248
Query: 714 YQNHD 718
+ D
Sbjct: 1249 SRGMD 1253
>gi|428186444|gb|EKX55294.1| hypothetical protein GUITHDRAFT_99074 [Guillardia theta CCMP2712]
Length = 1131
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 199/351 (56%), Gaps = 37/351 (10%)
Query: 746 HAISC---IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
A++C +D L S A AS+SS + P+ P+ +G PVL++KG+ HPF
Sbjct: 796 RAVACMAELDALCSLA-RASVSSDGL--PMCKPEVLEEEEGGGSGAPVLQVKGMRHPFLA 852
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
G +GG +PNDI LG + LLLTGPNMGGKST LR C +VILAQ+GC+VP E+
Sbjct: 853 G-SGGTFIPNDIELGGGTS-----CLLLTGPNMGGKSTTLRLACFSVILAQIGCYVPAEI 906
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
S D + TRLGA D I+ G STF+VE + +++L +++ SLVI+DELGRGTSTFDG
Sbjct: 907 MRFSPVDQVLTRLGAGDDILRGLSTFMVEMRDVSAMLSSSSRHSLVIIDELGRGTSTFDG 966
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
AIAYAV + LV+R+ CR L +THYH L EF V HMAC + ++
Sbjct: 967 LAIAYAVLKDLVDRVGCRTLLSTHYHLLVDEFREDSRVAPMHMACRVEEETDR------- 1019
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK---------- 1032
L+ LY+LT AC S+GL+ A AG+PQ+++ A+ A+ ++ S K
Sbjct: 1020 LIMLYKLTPSACSRSFGLECARAAGIPQELLGRAAEASRGLEVSTRSKRKREDPPSSSPS 1079
Query: 1033 ------SSEQRS-EFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHE 1076
S+ RS + SS W + I R + A++TL LW E
Sbjct: 1080 KRSCKESARARSPQLSSFRRIW-QEIPQGDRALSGKEALMAFNTLTRLWVE 1129
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 139/418 (33%), Positives = 208/418 (49%), Gaps = 35/418 (8%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
EA S + WL+ I+DAN+RRP DP YD ++++PP++ ++M+ Q+QYWN+K D
Sbjct: 189 EASKKSFWWWLEDQHIKDANQRRPTDPDYDASSVFVPPDSFREMTNFQQQYWNIKKCNFD 248
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG-----KCRQVGISESGIDDAVEKLV 341
L+ K+GKFYELYE DA +GHKEL+ T G + VG+ E+ ++ K+V
Sbjct: 249 TLILCKLGKFYELYERDALVGHKELNLNFTHGGRDPKNPRRMMCVGVPEACVEATASKIV 308
Query: 342 ARGYKVGRIEQLE-TSEQAKARHTNSVISRKLVNVVTPSTTVD----GTIGPDAVHLLAI 396
A GYKVG +E++E + K V R L + TP T D GT + + +
Sbjct: 309 ALGYKVGLVEEMEKATSMKKIADGRKVCERSLRKMFTPGTLCDEELIGTHESRPLVSVFL 368
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGT--INDDASCAALGALLMQVSPKEVIYENRG 454
E + D+ + GF VDC R+ VG+ +ND LL Q +P EV++ RG
Sbjct: 369 LEESRTSDDPHLQLGFCLVDCTTGRLLVGSSDVND------FEVLLRQYTPYEVLHP-RG 421
Query: 455 LCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV 514
K + + +A+ P D L A+ V ++ S+S +
Sbjct: 422 RMSSFLKNIIRRCVPAASWTSLPMGIKEDELAANAVGGVLSYLEKIGKSTS-------VL 474
Query: 515 MQHDIGFSALGGLISHLSRLMLDD--VLRNGDILPYKVYRDCLRMDGQTL--YLDSCVTS 570
+ F L + + SR ML D L ++L + ++ R + L Y+D TS
Sbjct: 475 AMRKLEF--LEEVRTTASRHMLLDSQTLSGLNVLEHP--QEKRRGEATCLWHYIDRAATS 530
Query: 571 SGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK 628
GKRLLR WI PL E I RLD V+ L + ++ + Q + K+PDLER L RV+
Sbjct: 531 FGKRLLRWWIARPLVRREDIRARLDAVQNL-QLEDLAGQLQQLMAKMPDLERKLARVR 587
>gi|66827461|ref|XP_647085.1| hypothetical protein DDB_G0268614 [Dictyostelium discoideum AX4]
gi|74897500|sp|Q55GU9.1|MSH6_DICDI RecName: Full=DNA mismatch repair protein Msh6
gi|60475825|gb|EAL73760.1| hypothetical protein DDB_G0268614 [Dictyostelium discoideum AX4]
Length = 1260
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 180/304 (59%), Gaps = 18/304 (5%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L E L ++ F + + I +S +D L S + SS M RPL
Sbjct: 928 LSKEVLKKILSNFAIYFNHFQIAITKLSQLDCLLSLYKVSFQSSIQMCRPLF-------- 979
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
V D G + +K + HP ++G +PNDI L +++ P ++LTGPNMGGKSTL
Sbjct: 980 VSSDQRG-FIDVKDMRHPCIYSKSGDDFIPNDISLNTENNP--PSLMVLTGPNMGGKSTL 1036
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
LR +C+ VI+AQ+GC+V C +S+ D IFTRLGA D I+ G+STF+VE ET++VL+
Sbjct: 1037 LRQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKY 1096
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT+ SLVILDELGRGTSTFDGY+IAY+V L ++ +FATHY L E ++
Sbjct: 1097 ATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLIS 1156
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
+M C + ++++FLY+L SG CP SYGL VA MAG+P++++ A +
Sbjct: 1157 TAYMTCHVDEEA-------KKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKST 1209
Query: 1022 AMKK 1025
M+K
Sbjct: 1210 QMEK 1213
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 218/434 (50%), Gaps = 55/434 (12%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I+DAN D P YDKRTL+IP L K S ++Q+W++KS+ D ++FFK GKFYELYE
Sbjct: 332 IKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKKGKFYELYE 391
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS----- 356
DA+IGH++L K+T R VG+ E + KL+ G+KV +++Q+ETS
Sbjct: 392 SDADIGHQQLHLKLT--DRVNMRMVGVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAK 449
Query: 357 ---EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYG 411
E+ +S+I R+L +++T T +D + D + +L+AIKE YG
Sbjct: 450 RQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKENEYDKQ-----YG 504
Query: 412 FAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA 471
FVD + ++ TI DD + LL+Q+ PKE++YE +G ++ K +
Sbjct: 505 VCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYE-KGATSPKTISIMKRVLSTV 563
Query: 472 ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL 531
+ +++ + ++++ QL G +P + L + + ALGG IS+L
Sbjct: 564 KPVMNARLSLEYWDPTDTMERITQL----CGGKTP--ETLCQMKNEEYLMGALGGCISYL 617
Query: 532 SRLMLDDVLRNGDILPYKVYR-------DCLRMDGQTL--------------------YL 564
+D + N + + R + + +DGQ L +
Sbjct: 618 ----MDIKIGNSVVEQARFKRFNPLDIGNSMILDGQCLVNLEIFNNSTDGSTEGTLFKLM 673
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
D C T+ GKR+ R WIC PL + I +R +E+L + E + V L KLPDLER++
Sbjct: 674 DRCTTAFGKRMFRQWICRPLANKNAIVDRQKAIEFLRDSPETLQKVTAILNKLPDLERMI 733
Query: 625 GRVKARVQASSCIV 638
R++A+ S ++
Sbjct: 734 ARIRAQTSKISDLI 747
>gi|443734707|gb|ELU18588.1| hypothetical protein CAPTEDRAFT_139957, partial [Capitella teleta]
Length = 1270
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/304 (44%), Positives = 185/304 (60%), Gaps = 20/304 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + A W+ + +S IDVL + +S GA ++ P+ P P L+I
Sbjct: 942 FDKHAESWNCAVQCLSLIDVL---ICLSEVSKGA---DMVRPEVHQPITAL---APFLEI 992
Query: 794 KGLWHP-FALGENGGLPVPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ HP + +PND +G EDS + R +L+TGPNMGGKSTL+R V
Sbjct: 993 REGRHPCISRSLAAADFIPNDTCIGGTAEDSGEGNGRLVLVTGPNMGGKSTLMRQVGCLV 1052
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+A LGC+VP E C LS+ D +FTRLGA+DRIM GESTF VE +ET+S+LQ A+ SLV+
Sbjct: 1053 IMAHLGCYVPAEKCALSVVDRVFTRLGASDRIMAGESTFFVELSETSSILQHASAHSLVL 1112
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH--PHVTLQHMAC 967
LDELG GT+T+DG AIA AV R+L ER CR LF+THYH L +EF+S V L HMAC
Sbjct: 1113 LDELGSGTATYDGTAIACAVVRELCER-RCRTLFSTHYHSLVEEFSSSHDASVRLGHMAC 1171
Query: 968 ----AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
A ++++ ++ + FLY+ SGACP+SYG A +AG+P +V+ A + A
Sbjct: 1172 MVEEAPADDTDSSDPSEETVTFLYKFVSGACPKSYGFNAAKLAGIPSEVISRAVGKSRAF 1231
Query: 1024 KKSI 1027
+ +I
Sbjct: 1232 ESTI 1235
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 211/457 (46%), Gaps = 77/457 (16%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
++L P K+RDA +R D P YD RT+Y+P L K + + +Q+W +K+++ D +LFFK+G
Sbjct: 289 DFLQPGKMRDAEKRTRDHPEYDARTIYVPDAFLNKQTPAMRQWWQLKAKHFDTILFFKMG 348
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYEL+ +DA I EL + G+ G E E L+ +GYKVGRIEQ E
Sbjct: 349 KFYELFHMDATIAVNELG---LIYMKGEQAHAGFPEIAYGRYAETLIQKGYKVGRIEQTE 405
Query: 355 TSEQAKARHTNS--------VISRKLVNVVTPSTT----VDGTIGP-DAVHLLAIKEGNC 401
T + + R S V++R+L +V T T +DG G + HLLA+KE
Sbjct: 406 TPDMVQERVRKSEGATKYDKVVARELCSVQTKGTKRYSFLDGDSGETSSAHLLAVKEVPS 465
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
DN S +G F+D + VG DD + L L +V++E RG E
Sbjct: 466 A-DNCS-SFGVCFIDTSVGTFHVGQFTDDRHQSRLRTLTSHYPVVQVLFE-RGNVSERLN 522
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP---WSKALENVMQH- 517
+ +A E P + F D S K + YF SP W +AL+ +
Sbjct: 523 SFLGHQMSAAIRE--PLKPNSQFWDGSRTLKELSEGSYFTEEESPTAAWPEALKAMQDEA 580
Query: 518 -----------DIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDC--------- 554
++ SALG +I +L ++D L RN ++VY
Sbjct: 581 DPLGKTPREGSELALSALGAVIWYLRESLIDHELISMRN-----FEVYHPLDSEAKEVSD 635
Query: 555 -----LRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
+ +DG TL +L+ C T GKRL + W+C P I
Sbjct: 636 FTNKKMVLDGVTLNNLEILQNGEGGTEGTLLDHLNRCSTPFGKRLFQQWLCAPSCQSSTI 695
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
N+RLD VE LM ++ +LRKLPDLERLL ++
Sbjct: 696 NDRLDAVEDLMALPDLAAEAQDFLRKLPDLERLLSKI 732
>gi|296418664|ref|XP_002838949.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634935|emb|CAZ83140.1| unnamed protein product [Tuber melanosporum]
Length = 1032
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/525 (32%), Positives = 261/525 (49%), Gaps = 59/525 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL I+DA+ PD P YD RTL++PP A K S +KQYW +KS+ D ++FFK
Sbjct: 133 RYFWL--VDIKDADGNPPDHPDYDPRTLFVPPSAWLKFSPFEKQYWEIKSRLYDTVVFFK 190
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+E D K+T R VG+ ES +D + +A+GYK+ R++Q
Sbjct: 191 KGKFYELYEDDATIGHREFDLKLT--DRVNMRMVGVPESSLDMWAAQFIAKGYKIARVDQ 248
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
ET+ + KA +I R+L V+T T VD ++ D A + +AIKE
Sbjct: 249 KETALGKEMREKCGKAGKEEKIIRRELACVLTGGTLVDESMLQDEMATYCVAIKESFREK 308
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ +G AFVD A + DD L Q+ P+E+I E L ++ + L
Sbjct: 309 EPS---FGIAFVDTATGEFSLSEFEDDFDLTKFETFLAQIRPRELIIEKGFLSSQSTRLL 365
Query: 464 R-KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP----WSKALENVMQHD 518
+ S + +L P + +F + S + + YF S+S W +ALE V + +
Sbjct: 366 KNNTSLNTIWNKLKPGV---EFWEGSTTVRELVSKDYFGESASKDRKGWPQALEEVKEKE 422
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG---QTLY--LDSCVTSSGK 573
+ SALG L+ +L L +D R +L +++ + DG TL+ L+ C+T GK
Sbjct: 423 LAMSALGALLCYLQTLKID---RELTLLNLEIFANS--SDGGPTGTLFSLLNRCITPFGK 477
Query: 574 RLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQA 633
R+ + W+CHPL D + IN RLD VE L N+ +L K+PDLERL+ R+ A
Sbjct: 478 RMFKLWVCHPLADSDKINARLDAVESLNSNNGFQDAFVTHLNKMPDLERLISRIHAGSSR 537
Query: 634 SSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII-------PSLSRIFK 686
++ + L G + +R A+D + L G +I P L R K
Sbjct: 538 ATDFLRVLEG--------------FEQIRDAIDEITLYSVGGGLIGQLLTSMPDLKRSLK 583
Query: 687 --PPIFDGSDGLDKFLTQFEAAIDSDFPDYQN--HDVTDLDAETL 727
FD + L E ++ DF Q+ D+ +++ E+L
Sbjct: 584 QWEAAFDREKAKSQGLLVPERGVELDFDTSQDVIEDIINVELESL 628
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/297 (37%), Positives = 160/297 (53%), Gaps = 22/297 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
E F W + ++ +D L S A +++ RP + ++
Sbjct: 709 FYERFDRDYQTWLGAVKIVANLDCLLSLARSSTSLGETSCRPTFVEGERS---------- 758
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
VL L HP + +PNDI LG DS P+ LLTG N GKST+LR TC+ V
Sbjct: 759 VLDFTELRHPCMVSSVDDF-IPNDIQLGGDS----PKLGLLTGANAAGKSTVLRMTCVGV 813
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+GCFVP + L+ D I +RLGA D I +STF VE +ET +L +AT SLVI
Sbjct: 814 IMAQIGCFVPSKSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILAEATPHSLVI 873
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTS++DG A+A +V + +I C FATHYH L EF HP + + M
Sbjct: 874 LDELGRGTSSYDGVAVAQSVLHHVATQIGCLGFFATHYHSLASEFIGHPEIQPKRM--QI 931
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ EN +++ FLY+L +G S+G+ A M G+ +++++ A AA + + +
Sbjct: 932 HVDEEN-----RDITFLYKLEAGVAEGSFGMHCAAMCGINKRIIDRAEDAARSFEHT 983
>gi|291546135|emb|CBL19243.1| DNA mismatch repair protein MutS [Ruminococcus sp. SR1/5]
Length = 872
Score = 238 bits (607), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 233/835 (27%), Positives = 375/835 (44%), Gaps = 135/835 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
K+Y K +Y D +LF+++G FYE++ DA KEL+ +T G + G+
Sbjct: 3 KEYVKTKEEYSDCILFYRLGDFYEMFFDDALTASKELEITLTGKDCGLEERAPMCGVPFH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ + +L+ +GYKV EQ+E ++AK ++ R++V +VTP TT+D T+ D
Sbjct: 63 AAETYINRLIEKGYKVAICEQVEDPKKAKG-----LVKREVVRIVTPGTTLD-TMSLDES 116
Query: 392 ---HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+L++I + G G + DC + D L + + +P E+
Sbjct: 117 KNNYLMSIV--SIGEHFGCAIADITTGDCFLTEL-------DKPQKLLDE-INKFTPAEI 166
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
I + L A K G L P + D +K L +F+ +
Sbjct: 167 ICNDAFLLSGVDVADLKGRLGICVFALDPW-----YFDDQLCQK--TLKEHFHVGN---- 215
Query: 509 KALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL----------- 555
LE + +D G A G L +L + I PY + L
Sbjct: 216 --LEGLGIGDYDSGIIASGALFLYLKETQKTALSHMASIRPYSAEKYMLIDSSSRRNLEL 273
Query: 556 -------RMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+ G L+ LD T+ G R LRS++ PL D E I RL +E L
Sbjct: 274 VETMREKQKRGSLLWVLDKTKTAMGARTLRSYVEQPLIDAEEIEKRLGALEELNAKPMDR 333
Query: 608 MVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ +YL + DLERL+ R+ + ASS +LP I + + + + + + +
Sbjct: 334 DEIREYLNPIYDLERLISRISYKSANPRDLVSFASSLEMLPYIKQILAEFKSPLLMQINE 393
Query: 660 GLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDG-SDGLDKF----------LTQFEA--- 705
+ D+ L+ P L++ I +G ++ +DKF L++ EA
Sbjct: 394 DMDPLSDITDLIRNSIADDPPLAQKDGGIIREGYNEDVDKFRRSRTDGKKWLSELEARER 453
Query: 706 --------------------AIDSDFPD-----------------YQNHDVTDLDAETLS 728
+ + F D Y ++ DL+ L
Sbjct: 454 ERTGIKSLKIKYNRVFGYSLEVTNTFKDLVPEDYIRKQTLTNAERYITQELKDLEDLILG 513
Query: 729 ILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR-QDNG 787
+L+ + +S++ + +V+R ++++ + L L +N VR + N
Sbjct: 514 AEDKLYALEFELFSDIRDQVGA-EVVRIQRTAKAVAALDVFASLALVAQRNNFVRPKINE 572
Query: 788 GPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
++ I+ HP + EN + +PND L D+ R ++TGPNM GKST +R T
Sbjct: 573 TGLIDIRNGRHPVVEQMIEN-DMFIPNDTYL----DNHKKRISIITGPNMAGKSTYMRQT 627
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L V++AQ+G FVP + + + D IFTR+GA+D + +G+STF+VE TE A++L+ AT
Sbjct: 628 ALIVLMAQIGSFVPADSANIGVVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSR 687
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINC--RLLFATHYHPLTKEFASHPHVTLQ 963
SL+ILDE+GRGTSTFDG +IA+AV + C + LFATHYH LT+ V
Sbjct: 688 SLLILDEIGRGTSTFDGLSIAWAVIEHISNTKLCGAKTLFATHYHELTELEGKLSGVNNY 747
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+A KGD ++VFL ++ G +SYG+QVA +AGVP V++ A
Sbjct: 748 CIAVK--------EKGD-DIVFLRKIVKGGADKSYGIQVAKLAGVPDSVIQRAKE 793
>gi|363744798|ref|XP_003643127.1| PREDICTED: DNA mismatch repair protein Msh3-like [Gallus gallus]
Length = 1090
Score = 238 bits (607), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 246/926 (26%), Positives = 394/926 (42%), Gaps = 174/926 (18%)
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
+T+Y P E Q+ +K +Y D +L + G Y + DAEI KEL+ I
Sbjct: 178 KTIYTPLEL---------QFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELN--ICC 226
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
I + V +LVA+G+KVG I+Q+ET+ +A + +S+ SRKL +
Sbjct: 227 HQDHNFMTASIPTHRLFVHVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALY 286
Query: 377 TPSTTVDGTIGP-----DAV------------HLLAIKEGNCGPDN---GSVVYGFAFVD 416
T ST + + P D+V +LL I E N G +V G +
Sbjct: 287 TKSTLIGEDVNPLLKLDDSVDVEEVTTDVPDNYLLCICENGENVKNRKKGDIVIGVMAIQ 346
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELT 476
V + D AS L + L+++ P E+I + L +++K + ++ +
Sbjct: 347 PTTGEVVFDSFGDCASRLELESRLLRLQPVELILPS-SLSDQSEKLINSVTSMRLRDDRI 405
Query: 477 PAMAVTDFLDASEVKKLVQLNGYFNGSSSP---WSKALENVMQHDIG-FSALGGLISHLS 532
+ ++ E QL F P + L ++ D AL +I++L
Sbjct: 406 RVERMKNY--HFEYSNAFQLVTDFYAKEVPDITGPQKLSVILSLDKPVICALAAVITYLK 463
Query: 533 RLMLDDVLRN-GDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSS 571
L+ +L N + + + ++G T+ LD TS
Sbjct: 464 EFNLEKMLYNPSNFKQLSSETEYMTINGTTMKNLEILQNQTDLKTKGSLLWVLDHTKTSF 523
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER-------- 622
G+R L+ W+ PL IN RLD V E L+ S V + L KLPDLER
Sbjct: 524 GRRRLKKWVIQPLMKCSEINARLDAVSEILLSESSVFGQIQNLLCKLPDLERGLCSVFHK 583
Query: 623 ------------LLGRVKARVQA-----SSCIVLPLIGK----------------KVLKQ 649
L R+ + +QA S + PL+ K+L +
Sbjct: 584 KCSTQEFFLIVSTLSRLDSEIQALVPVIHSHVKSPLLQNALLEIPELLSPVKHYLKILNE 643
Query: 650 QVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRI------FKPPIFDGSDGL-----DK 698
+ G + + D ++ K+ I+ LS+I + I + S +
Sbjct: 644 EAAKTGDKTQLFKDLTDFPVIRKKKEEILDVLSKIQLHLLEIRKQIKNPSAEYVTVSGQE 703
Query: 699 FLTQFEAAIDSDFPD-------------YQNHDVTDLDAETLSILIELFIEKASQW---- 741
FL + + + S P + + +T+ + +L ++ ++W
Sbjct: 704 FLVEVKNSHISSVPSNWVMVSSTKAVSRFHSPFITENYRHLNQLREQLVLDCGAEWLRFL 763
Query: 742 ---SEVIHAIS-------CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
SE H +S ID L F++ + G RP++ +DN ++
Sbjct: 764 DHFSEHYHTVSKAIGHLATIDCL--FSLAQAAKQGDYCRPVV----------KDNQQEII 811
Query: 792 KIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
IK HP LGE VPN L D + R +++TGPNMGGKS+ ++ L
Sbjct: 812 -IKNGRHPVIDVLLGEQDQY-VPNTTNLSRDGE----RVMIITGPNMGGKSSYIKQVALI 865
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA ++++AT SLV
Sbjct: 866 TVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRRATSRSLV 925
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMAC 967
ILDELGRGTST DG AIAYA + + LF THY + + +P V HMA
Sbjct: 926 ILDELGRGTSTHDGIAIAYATLEHFITDVESLTLFVTHYPSVCELENVYPGKVGNYHMAF 985
Query: 968 AFKSNSENYSKGDQE------LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
KG +E + FLY++T G SYGL VA +A +P+++++ A+H +
Sbjct: 986 LVNKEESAEQKGSEEEENPEFVTFLYQITKGVTARSYGLNVAKLADIPEEILKKAAHKSK 1045
Query: 1022 AMKKSIGESFKSSEQRSEFSSLHEEW 1047
+++ + + +R + S E W
Sbjct: 1046 ELERLV------NVKRKKLKSFAEAW 1065
>gi|430813560|emb|CCJ29107.1| unnamed protein product [Pneumocystis jirovecii]
Length = 826
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 151/452 (33%), Positives = 235/452 (51%), Gaps = 38/452 (8%)
Query: 225 EEEADTTSK-FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQ 283
E+ +D S+ + +L P RDA+ P YD+RTLYIPP A K +KQYW++K +
Sbjct: 231 EDISDKNSENYMFLLPEYRRDADGNLSSSPNYDERTLYIPPSAYKSFKPFEKQYWDIKCK 290
Query: 284 YMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVAR 343
+MD ++FF+ GKFYELY+LDA+IGH+ + K+T VG R VGI E+ + K +A+
Sbjct: 291 FMDTVVFFQKGKFYELYQLDADIGHQLFNLKMT-DRVGTMRMVGIPEANYEYWASKFIAK 349
Query: 344 GYKVGRIEQLETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPD-AVHLLA 395
+K+ R++QLE++ + R S V+ R+LV V+T T V +G I + + + +A
Sbjct: 350 NFKIARVDQLESALSKEMRDKISKTKEEKVVRRELVQVLTSGTLVNEGIIKSEMSTYCMA 409
Query: 396 IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
IKE + D + +G F+D + + DD L L+ Q+ PKE+I E +
Sbjct: 410 IKE-DYKMDKSQICFGVCFIDASVGHFNITYFEDDFIRTKLHTLITQIRPKELILEKGNV 468
Query: 456 CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWSKALENV 514
+ K L+ ++G + +F + + + +NGYF N W AL+
Sbjct: 469 TPQTIKLLK--NSGINEMICNFIKPNIEFWNEQTTESEILMNGYFENNDYKSWPSALQKA 526
Query: 515 MQHDIGFSALGGLISHLSRLMLDDVLRN-GDILPYKVYRDC--LRMDGQTL--------- 562
+ + S++GGLI +L L +D L G+ Y + L +DGQTL
Sbjct: 527 RDYPLALSSVGGLIWYLKTLKMDKTLCTLGNFEWYDPIQKTSSLILDGQTLKNLEIFNNS 586
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ C+T GKRL R W+CHPL+ V+ IN RLD VE L+ + + ++
Sbjct: 587 YDGGTEGTLIKLLNRCITPFGKRLFRLWLCHPLRSVKDINERLDAVE-LLNDLSIRKIII 645
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIG 643
+ LPDLER++ R+ A+ S V L G
Sbjct: 646 DSFKTLPDLERMISRIHAKNCKSKDFVCVLEG 677
>gi|354544901|emb|CCE41626.1| hypothetical protein CPAR2_801760 [Candida parapsilosis]
Length = 1244
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 231/431 (53%), Gaps = 41/431 (9%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL I+DA +R PDDP YD RTLYIP A K +A +KQYW +KS+ + ++FFK
Sbjct: 307 RYQWL--VNIKDAEKRSPDDPNYDPRTLYIPQSAWSKFTAFEKQYWEIKSKMWNTVVFFK 364
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I + + D KI G + GI E + ++ ++ GYKV +++Q
Sbjct: 365 KGKFYELYENDAIIANTQFDLKIAGGGRANMKLAGIPEMSFEHWAKEFISHGYKVAKVDQ 424
Query: 353 LETSEQAKARHTNS----VISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
E+ + R S +I R+L V+T T + + D + + L+IKE C ++G
Sbjct: 425 KESMLAKEMRGGGSKEEKIIKRELTGVLTGGTLTNLDMITDDMSTYCLSIKEEAC--EDG 482
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
S ++G AFVD A + + + DDA C L L+ QV PKEVI E LC A + L KF
Sbjct: 483 SKIFGVAFVDTATSELNLIELYDDAECTKLDTLITQVKPKEVICEKGNLCNIATQVL-KF 541
Query: 467 SAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSSSPWSKALENVM----QHDIGF 521
A S +T+F D V++LV+ Y +SK E ++ +H + F
Sbjct: 542 CAHSNNQIWNNLNPITEFWDYDVAVEQLVKSKYYDAEDMDDFSKYPEVLVDFKKRHFVAF 601
Query: 522 SALGGLISHLSRLMLDD-VLRNGDILPYKVYRD---CLRMDGQTL--------------- 562
+A GGL+S+L L LD+ ++ G+I YK+ + + +DG TL
Sbjct: 602 NAFGGLLSYLKTLKLDESIMSLGNIRQYKISENETSHMILDGITLSNLEILNNNYDGGDQ 661
Query: 563 -----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN-SEVVMVVAQYLRK 616
++ T GKR L+ WI HPL ++ I++R D ++YLM + SE+ + L
Sbjct: 662 GTLLKLVNRATTPFGKRHLKKWILHPLMRIDEISSRYDSIDYLMSDGSELRSTLQDCLTA 721
Query: 617 LPDLERLLGRV 627
LPDLERL+ RV
Sbjct: 722 LPDLERLIARV 732
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 176/306 (57%), Gaps = 27/306 (8%)
Query: 739 SQWSEVIHAISCID-VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
S W +VI+ I+ ID +L V+ S+S P + V+ D+G VL K L
Sbjct: 919 STWMKVINCIANIDCILALTKVSESIS---------YPSCRPEFVQGDHG--VLDFKELR 967
Query: 798 HPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
HP +G NG +PNDI LG D P LLTG N GKST++R T LAVIL+Q+GC+
Sbjct: 968 HPCFVG-NGNF-IPNDIHLGGDE----PNFGLLTGANAAGKSTIMRTTALAVILSQIGCY 1021
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
+P L+ D I TRLGA D IM G+STF VE +ET +L AT SLVILDELGRG
Sbjct: 1022 IPASSAKLTPVDRIMTRLGANDNIMQGKSTFFVELSETKKILSNATPRSLVILDELGRGG 1081
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
S+ DG+AIA AV L + FATHY+ L+ F SHP + MA S
Sbjct: 1082 SSSDGFAIAEAVLHHLATHLQPLGFFATHYNTLSVSFKSHPQIKPMRMAIVVDQES---- 1137
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK--SIGESFKSSE 1035
+++ FLY+L SG P S+G+ VA+M G+P+++V+ A AA ++ S+ +++ ++
Sbjct: 1138 ---RDITFLYKLESGTAPGSFGMNVALMCGIPKEIVDNAEVAAKKYEQVSSLKRTYEEAD 1194
Query: 1036 QRSEFS 1041
+ E S
Sbjct: 1195 KDEEMS 1200
>gi|169596160|ref|XP_001791504.1| hypothetical protein SNOG_00833 [Phaeosphaeria nodorum SN15]
gi|160701244|gb|EAT92328.2| hypothetical protein SNOG_00833 [Phaeosphaeria nodorum SN15]
Length = 1217
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 173/551 (31%), Positives = 265/551 (48%), Gaps = 62/551 (11%)
Query: 212 RLLQDSVAGVKNCEEE---ADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK 268
R QDS V +E ++ ++ WL + + DA+R D P YD RTLYIPP A+
Sbjct: 268 RPCQDSKKDVNKRKERPSASEPEKRYPWL--ANMEDADRHPSDHPDYDPRTLYIPPGAMN 325
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
S +KQYW +KS++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+
Sbjct: 326 AFSPFEKQYWEIKSKFWDTIVFFKKGKFYELYEKDASIGHQLFDLKLT--DRVNMRMVGV 383
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETS----------EQAKARHTNSVISRKLVNVVTP 378
E+ +D + VA G+KV R++Q+E++ +++ + + VI R+L V+T
Sbjct: 384 PEASLDMWATQFVAAGHKVARVDQMESALAKEMRERDDKKSTTKKADKVIRRELAAVLTA 443
Query: 379 STTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
T VD G + D + + +AIKE DN +G AFVD A + + I DD
Sbjct: 444 GTLVDTGMLQSDMSTYCMAIKE--IERDNLP-AFGVAFVDSATAQFQLCEIADDIDMTKF 500
Query: 437 GALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQ 495
L+ Q+ P E++ E + +A + L+ +A S L P+ +F A + +
Sbjct: 501 ETLIAQMRPGELLIEKSCISAKALRILKNNTAPSTIWNYLKPS---KEFWPADITIREID 557
Query: 496 LNGYFNGSS----SPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKV 550
N YF + W L + D+ SA G L+ +L L ++ D++ G+ Y
Sbjct: 558 SNNYFESPTEDNVEAWPPVLREAREQDLVMSAFGALLQYLRTLKIERDLVTCGNFQWYDP 617
Query: 551 YRD--CLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVE 588
R L +DGQ+L L+ C+T GKRLLR W+CHPL D +
Sbjct: 618 IRKSTTLVLDGQSLINLEIFANSFDGSAEGTLFAMLNRCITPFGKRLLRQWVCHPLADAQ 677
Query: 589 GINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK 648
IN RLD V+ L +S ++ + L KLPDLERL+ RV A + + L G + ++
Sbjct: 678 KINARLDAVDALNADSTIMDNFSASLSKLPDLERLISRVHANRCKAQDFLKVLEGFEQIE 737
Query: 649 QQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKP--PIFDGSDGLDKFLTQFEAA 706
V + +G + L+ M P L+ +P FD + + E
Sbjct: 738 YTVSLLKQFSEGEGVIGQLITSM-------PDLASALEPWKSAFDRDLAKKEGILVPEPG 790
Query: 707 IDSDFPDYQNH 717
++ DF + Q
Sbjct: 791 VEEDFDNSQQE 801
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 154/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + I+ +D L S A +S RP+ + V++
Sbjct: 895 FDENYKTWLAAVKIIAQLDCLISLAKASSSLGEPSCRPVF----------SEGKRTVVEF 944
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PNDI LG D + LLTG N GKST+LR TC+AVI+AQ
Sbjct: 945 EELRHPCMLNTVDDF-IPNDIRLGGDESNIS----LLTGANAAGKSTILRMTCIAVIMAQ 999
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 1000 VGCYLPCTSAKLTPVDRIMSRLGANDNIFAAQSTFFVELSETQKILSEATPRSLVILDEL 1059
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + R+ C FATHY L KEF HP V + M +S
Sbjct: 1060 GRGTSSYDGVAVAQAVLHDIASRVGCVGFFATHYRSLAKEFEFHPEVQNKRMRIHVDESS 1119
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ + FLY+L G S+G+ A M G+P K+++ A AA
Sbjct: 1120 KS-------ITFLYKLEEGVAEGSFGMHCAAMCGIPSKIIDNAEKAA 1159
>gi|118368049|ref|XP_001017234.1| MutS domain III family protein [Tetrahymena thermophila]
gi|89299001|gb|EAR96989.1| MutS domain III family protein [Tetrahymena thermophila SB210]
gi|311992449|gb|ADQ26782.1| putative mismatch repair protein [Tetrahymena thermophila]
Length = 1232
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 184/313 (58%), Gaps = 28/313 (8%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFA-VTASMSSGAMHRPLILPQSKNPAVR 783
E + + F E W +I+ ++ +D L S + V+ ++ G M RP + P S+
Sbjct: 899 EFCRFIFKEFYESYKTWDTLINILAELDCLISLSRVSFLLADGVMSRPELYPASEKYV-- 956
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLG--------EDSDDCLPRTLLLTGPNM 835
P +++ HP L G +PNDI LG ED+ + + LLTGPNM
Sbjct: 957 -----PFIELTSGRHP-CLASMGVNFIPNDIYLGDIKQTGQFEDNKNLI----LLTGPNM 1006
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKST LR C+ ILAQ+GC+VP + ++L D IFTR+GA+D++M G+STF +E ET
Sbjct: 1007 GGKSTTLRMACVMAILAQIGCYVPAKSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEET 1066
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
++ +++ ++ SL+I+DELGRGTSTFDG AIAY++ R LVE + R LFATHYH L EF
Sbjct: 1067 SNAVKQGSKHSLIIMDELGRGTSTFDGVAIAYSIVRYLVENLQSRCLFATHYHVLLDEFR 1126
Query: 956 SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEA 1015
+P + HMAC E SK ++FLYRL +G C S+G+ VA + G+ ++E
Sbjct: 1127 HYPQIAYYHMACHV---DEKRSK----VIFLYRLKAGECSSSFGINVAKVVGISDNLIEI 1179
Query: 1016 ASHAALAMKKSIG 1028
A A ++++
Sbjct: 1180 AKQKAKEFEENLN 1192
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 215/449 (47%), Gaps = 71/449 (15%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
DTT F P D+ +R+ DP YD TLY+PPE+LK+ + +QYW +KS D +
Sbjct: 226 DTTPYFAL--PENAMDSKKRKRTDPNYDPTTLYVPPESLKQFTPVMRQYWEIKSTNFDKI 283
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
LFFK+GKFYEL+ DA I HKELD L+ +GK G E +D KL++ GYKV
Sbjct: 284 LFFKLGKFYELFYEDALITHKELD----LNWMGKKMHTGFPEKALDKMASKLISLGYKVA 339
Query: 349 RIEQLETSEQAKARHTNS-----VISRKLVNVVTPST-TVDGTIGPDAVHLLAIKEGNCG 402
EQ ET EQ K R +SR+LV V+T T + +L++++
Sbjct: 340 VAEQTETPEQMKQRLMREKSGPKCVSRELVQVMTKGTYDQNNETDYQPRYLMSLR----- 394
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
N +G V+ + + V +NDD LL QV P+E++Y+ + + +K
Sbjct: 395 --NFQTKFGIIIVESSTNVITVAYLNDDIHFTQFKTLLCQVKPQEIVYDPDNMTHDIKKI 452
Query: 463 LRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSSSPWSKALENVM-----Q 516
++ +G A +L+P D + L + +G + W K L N+ +
Sbjct: 453 IQ---SGYLAPQLSPLQNKNDNWNKGMAYNHLDKTHG--DVLEGKWPKLLNNLYNTEETK 507
Query: 517 HDIGFSALGGLISHL-SRLMLDDVLRNGDILPYKVY------RDCLRMDGQTL------- 562
D+ F ++ GL ++L S L+LD V+ + Y++Y R C+ +D Q+L
Sbjct: 508 RDLIFESMAGLFNYLKSILILDQVI---SVARYQIYDIEKGVRSCMILDSQSLQHLEILD 564
Query: 563 ------------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
Y++ T G R+L++WIC PL D+ I +R D +E
Sbjct: 565 SSSGPVSTQKENYKLHFDDGSLLGYINKTKTPFGYRMLKNWICAPLMDINKIYDRYDAIE 624
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L K + + + KLPDLE++ GR+
Sbjct: 625 DLQKFNSERDTFLRGIEKLPDLEKMCGRI 653
>gi|307172014|gb|EFN63608.1| Probable DNA mismatch repair protein Msh6 [Camponotus floridanus]
Length = 1117
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/298 (43%), Positives = 181/298 (60%), Gaps = 22/298 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD--NGGPVL 791
F EK W I+ ++ +DVL S A A +G M P I D +G +
Sbjct: 818 FSEKYDMWHRAIYKVATMDVLISLADYAR--NGDMCIPEI----------HDGLDGEIFI 865
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
KI+ HP + +N +PND LL D L ++LTGPNMGGKSTL+R L I+
Sbjct: 866 KIRDGKHPCIISDNF---IPNDTLLATDDTASL---MILTGPNMGGKSTLMRQVGLITIM 919
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+G +VP C ++L D IFTRLGA D I+TG+STFLVE ETA++LQ AT SLV+LD
Sbjct: 920 AQIGSYVPASSCCITLVDRIFTRLGANDDILTGQSTFLVELNETATMLQHATPYSLVLLD 979
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
ELGRGTST+DG AIA +V L ++ CR LF+THYH L +++ ++ VTL HMAC ++
Sbjct: 980 ELGRGTSTYDGTAIAASVVDALT-KLKCRTLFSTHYHSLVEDYKTNKEVTLAHMACMVET 1038
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
E + ++ + FLY+L+ GACP+SYG A +AG+P + + A A M++ +
Sbjct: 1039 GEEE-NVSEETVTFLYKLSEGACPKSYGFNAARLAGIPSIITKKAHEIASKMEQETND 1095
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 151/535 (28%), Positives = 226/535 (42%), Gaps = 76/535 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K ++L P KIRD RR DP YD RT+Y+P + L + + +Q+W +KS++ D +LFFK
Sbjct: 170 KLDFLQPEKIRDIQRRTLKDPDYDSRTVYVPVDFLNNQTPAMRQWWELKSKHFDCVLFFK 229
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL G+ G E G L+ RGYKV R+EQ
Sbjct: 230 VGKFYELYHMDAVIGVNELSLTYMR---GEFAHSGFPEIGYGRYSASLIERGYKVARVEQ 286
Query: 353 LETSEQAKARHT--------NSVISRKLVNVVTPSTTVDGTI-----GPDAVHLLAIKEG 399
E E R + + V+ R++ + T T V + P++ +LL++ E
Sbjct: 287 TENPEMMATRCSKMIKTTKFDKVVKREICQISTRGTRVYTPLDVEASSPNSNYLLSLVE- 345
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
C P + +G F+D + +DD + L LL P VIYE L +
Sbjct: 346 RCDPGQTNSSFGVCFIDTTIGEFNLSQFDDDYCNSRLLTLLAHHPPMHVIYERGNL---S 402
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN---GSSSPWSKALENVMQ 516
+K L+ + A P F A+ K + YF S W L++ +
Sbjct: 403 RKILQLINNTLPAALKEPLQREAQFWSATTTLKNLHEGNYFKKEEDSDFAWPADLKSYLN 462
Query: 517 H------------DIGFSALGGLISHLSRLMLDD-VLRNGDILPY-------------KV 550
++ ALGG + L +L+ +L G Y
Sbjct: 463 EGDSLGLTPASNKELAVHALGGCVYLLKDFLLEQQLLAQGCFNTYIPPDFSAANNRAGLS 522
Query: 551 YRDCLRMDGQTL-------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
Y + + +D T+ LD C T+ GKRLLR WIC P + I R V
Sbjct: 523 YTNTMVIDAVTIKNLRIFGENSLNSVLDHCCTAFGKRLLREWICRPSCRKDIIIKRQKAV 582
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSL 657
+ L+ +++ L LPDLERLL ++ A+ A+ P G+ ++ F
Sbjct: 583 QELVDRIDMIQSARAILSTLPDLERLLSKIHAQGNAAKMKNHP-DGRAIM------FEGP 635
Query: 658 VKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFP 712
RI ++ M + K ++ F D L TQ+E + DFP
Sbjct: 636 TYSKRIIVEFTMTLAKFEEVLK-----FIELFNDFESNLISHCTQYEP--NGDFP 683
>gi|373956737|ref|ZP_09616697.1| DNA mismatch repair protein mutS [Mucilaginibacter paludis DSM 18603]
gi|373893337|gb|EHQ29234.1| DNA mismatch repair protein mutS [Mucilaginibacter paludis DSM 18603]
Length = 869
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 242/860 (28%), Positives = 384/860 (44%), Gaps = 157/860 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+++ LL F+VG FYE + DA L +T G + G
Sbjct: 13 QQYNTIKAKHPGALLLFRVGDFYETFGEDAIKASGILGIVLTKRANGAATHIELAGFPHH 72
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDA 390
+D + KLV G +V +QLE + T +++ R + +VTP D + +
Sbjct: 73 SLDTYLPKLVRAGQRVAICDQLE-----DPKTTKTIVKRGVTELVTPGVAYGDNIVQQKS 127
Query: 391 VHLLA--IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ LA E N G A +D + N D + LL SP EV
Sbjct: 128 NNYLASLYFEKNT--------IGIALLDISTGEFLTAQGNSDY----IDKLLQSFSPSEV 175
Query: 449 IY-ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL-------VQLNGYF 500
I+ +NR + R ++ T A L EVK L + L
Sbjct: 176 IFPKNRNASFKETFGDRFYTYALDEWPYTGDYATETLLKHFEVKSLKGFGIEKLNLGIVA 235
Query: 501 NGSSSPWSKALENV-MQHDIGFSALGGLISHLSRLMLDDV-LRNGDILPYKVYRDCLRMD 558
G + + E+ +QH SA+G I L LD +RN +++ +D
Sbjct: 236 AGVALHYLNETEHKNLQH---ISAIGR-IEEEKYLWLDRFSIRNLELIGSHNDNAVTLVD 291
Query: 559 GQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
LD + G R+LR WI PLK+ + I +RL+VVEYL+ + E+ + Q +R++
Sbjct: 292 ----VLDHTCSPMGARMLRRWIVMPLKERKPIEDRLNVVEYLIAHEELKEELKQQIRQIG 347
Query: 619 DLERLLGRV-------------KARVQASSCI----------VLPLIGKKV-----LKQQ 650
DLERL+ ++ K + A++ I L IG+++ ++++
Sbjct: 348 DLERLISKIGLQKANPREVVQLKKALAATNVIKGICSQSESAALRTIGEQLNPCVLIREK 407
Query: 651 VKV------------FGSLVKGLRIAMD------------LLMLMHKEGHI--IPSL--- 681
++ G + +G+ +D LL + +E I IPSL
Sbjct: 408 IEKELQADPPVMIIKGGVIAEGINEELDRLRKIAFGGKGYLLEIQKREAEITRIPSLKVA 467
Query: 682 -SRIFKPPIFDGSDGLDKFLTQF---------EAAIDSDFPDYQNHDVTDLDAETLSILI 731
+ +F + + DK T++ E I + +Y+ + + + L++
Sbjct: 468 FNNVFGYYLEVSNAHKDKVPTEWIRKQTLVNAERYITPELKEYEEQ-ILGAEEKILALET 526
Query: 732 ELFIEKASQWSEVIHAISC-------IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
L+ E + ++ I I +DVL +FA A KN V+
Sbjct: 527 RLYNELLYELTQYIKPIQLNAQLVAQLDVLLNFATIAI---------------KNYYVKP 571
Query: 785 D-NGGPVLKIKGLWHP-----FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
D N G ++ IKG HP LGE + ND+ L DS + +++TGPNM GK
Sbjct: 572 DINEGSIIDIKGGRHPVIEKNLPLGEE---YITNDVYLDSDSQ----QIIIITGPNMAGK 624
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S LLR T L V++AQ+G FVP + + L D IFTR+GA+D + +GESTF+VE ETAS+
Sbjct: 625 SALLRQTGLIVLMAQMGSFVPAKEATVGLVDKIFTRVGASDNLSSGESTFMVEMNETASI 684
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFAS 956
L + SL++LDE+GRGTST+DG +IA+A+ L + LFATHYH L E +
Sbjct: 685 LNNLSDRSLILLDEIGRGTSTYDGISIAWAIAEYLHNHPSAKAKTLFATHYHELN-ELTN 743
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H K+ + + +++FL +L G S+G+ VA +AG+P +V+ A
Sbjct: 744 SFH--------RIKNFNVTVKEVGHKIIFLRKLVPGGSEHSFGIHVAKLAGMPPRVLSRA 795
Query: 1017 SH--AALAMKKSIGESFKSS 1034
+ L +++ GES K S
Sbjct: 796 NEILKKLEAERTGGESIKES 815
>gi|328866749|gb|EGG15132.1| mutS like protein [Dictyostelium fasciculatum]
Length = 1168
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 179/322 (55%), Gaps = 28/322 (8%)
Query: 717 HDVTDLDAETLSILI-ELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
D ++ +T+ + I ELF + W + + ++ ID L S + S+ M RP
Sbjct: 820 RDYLEVTRKTVFVQIQELFNQFHLDWQQAVQCLAHIDCLMSLTRVSHQSTYPMCRPHF-- 877
Query: 776 QSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLG------------EDSDDC 823
+ + P L + + HP + G +PND+ LG +S
Sbjct: 878 ------IETQDDEPCLSVLEMRHPAISIKGGADFIPNDLQLGGLGTEISSTGVKNNSHPG 931
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
P ++LTGPNMGGKSTLLR C+ VI+AQ+GC VP C +++ D IFTRLGA D IM
Sbjct: 932 KPSVMVLTGPNMGGKSTLLRQACILVIMAQMGCHVPATSCRMTVFDRIFTRLGANDDIMA 991
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G STF+ E ET+SVL+ AT+ SLVI+DELGRGTSTFDGY+IAY+V + + E I +F
Sbjct: 992 GNSTFMTELRETSSVLRYATKRSLVIMDELGRGTSTFDGYSIAYSVLKYIAETIKSTCIF 1051
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
ATHY L E + HM+C + ++++FLY+L G CP+SYGL V
Sbjct: 1052 ATHYQSLANEPGIRDTIATSHMSCHVDDTA-------KKVIFLYKLCDGICPDSYGLHVG 1104
Query: 1004 VMAGVPQKVVEAASHAALAMKK 1025
MAG+P +V++ A A +K
Sbjct: 1105 AMAGIPLQVIQVAEQKARQFEK 1126
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 218/437 (49%), Gaps = 60/437 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+FE+L ++D N+ YD RTLYIPP L + ++Q+W +K + D ++FFK
Sbjct: 206 RFEFL--VNLKDENQIPFGHEGYDPRTLYIPPVKLSTFTPFERQFWEIKMKNYDTVVFFK 263
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA+IG+++ K+T R VG+ E+ K + +GYKV +++Q
Sbjct: 264 KGKFYELYENDADIGNEKFGLKMT--DRVNMRMVGVPEASFTTWAAKFIDQGYKVAKVDQ 321
Query: 353 LETS---------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
+E+S + A T S+I R+LV+V+T T VD + + A +L+AIKE
Sbjct: 322 MESSYGMAKRQKQDGGSADKTKSIIQRQLVSVLTLGTLVDENLLTEQTASYLMAIKE--- 378
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
D+ + + FVD + + + DD + L +L+Q PKE+I E G +
Sbjct: 379 --DDYNKILAVCFVDTSVGLFYTTSFKDDENRTQLETILLQTMPKEIIVEKTGYSNTTMQ 436
Query: 462 ALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDI 519
+++ + + + TP ++ +++ ++ N G P ++ ++
Sbjct: 437 LIKRILSRQRHIINQRTPL----EYWAPDQIQGAIKAN---QGLPIP-----AEIVNDEM 484
Query: 520 GFSALGGLISHLSRLML-DDVLRNGDILPYKVYRD-----CLRMDGQ------------- 560
SA+G +S+L + + +D+++ Y L +DGQ
Sbjct: 485 MMSAVGACLSYLFDIKIGEDMVKQARYEQYNSQASGGSGGALVLDGQCLINLEIFNNTTD 544
Query: 561 -----TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+LY LD C T GKRLLR W+C PL D+ IN+RLD V+ L NS++ +A
Sbjct: 545 GGKEGSLYKVLDRCQTGFGKRLLRQWVCRPLADIHRINDRLDAVDALGNNSDIFASLAGM 604
Query: 614 LRKLPDLERLLGRVKAR 630
K+PD+ER + R+ AR
Sbjct: 605 FNKMPDIERTISRIHAR 621
>gi|448508881|ref|XP_003866016.1| Msh6 protein [Candida orthopsilosis Co 90-125]
gi|380350354|emb|CCG20576.1| Msh6 protein [Candida orthopsilosis Co 90-125]
Length = 1242
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 230/431 (53%), Gaps = 41/431 (9%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL I+DA +R PDDP YD RTLYIP A K +A +KQYW +KS+ + ++FFK
Sbjct: 305 RYQWL--VNIKDAEKRTPDDPNYDPRTLYIPQSAWSKFTAFEKQYWEIKSKMWNTVVFFK 362
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I + + D KI G + GI E + ++ ++ GYKV +++Q
Sbjct: 363 KGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGIPEMSFEHWAKEFISHGYKVAKVDQ 422
Query: 353 LETSEQAKARHTNS----VISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
E+ + R S +I R+L V+T T + + D + + L+IKE ++G
Sbjct: 423 KESMLAKEMRGGGSKEEKIIKRELTGVLTGGTLTNLDMITDDMSTYCLSIKEDTA--EDG 480
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
S ++G AFVD A + + ++DDA C L L+ QV PKE+I E LC A + L KF
Sbjct: 481 SKIFGVAFVDTATSELNLIELHDDAECTKLDTLITQVKPKEIICEKGNLCNIATQIL-KF 539
Query: 467 SAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSSSPWSKALENVM----QHDIGF 521
A S +T+F D V++LV+ Y +SK E ++ H + F
Sbjct: 540 CAHSNNQIWNSLNPITEFWDYDIAVEQLVKSKYYDAEDLDDFSKYPEVLVDIKKNHLVAF 599
Query: 522 SALGGLISHLSRLMLDD-VLRNGDILPYKVYRD---CLRMDGQTL--------------- 562
+A GGL+S+L L LD+ ++ G+I YK+ + + +DG TL
Sbjct: 600 NAFGGLLSYLKTLKLDESIMSLGNIKQYKISENETSHMILDGITLGNLEILNNNYDGGDQ 659
Query: 563 -----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLRK 616
++ T GKR L+ WI HPL ++ IN R D ++YLM + SE+ ++ L
Sbjct: 660 GTLLKLVNRATTPFGKRHLKKWILHPLMRIDEINLRYDSIDYLMDEGSELRSILQDCLTS 719
Query: 617 LPDLERLLGRV 627
LPDLERL+ RV
Sbjct: 720 LPDLERLIARV 730
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 126/308 (40%), Positives = 167/308 (54%), Gaps = 34/308 (11%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W +VI+ I+ ID + + A S S G P + V+ D+G VL K L H
Sbjct: 917 TTWMKVINCIANIDSILALA-KVSESIG-------YPSCRPEFVQNDHG--VLDFKELRH 966
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
P +G +PNDI LG + P LLTG N GKST++R T LAVIL+Q+GC++
Sbjct: 967 PCFVGTKDF--IPNDIHLGGEE----PNFGLLTGANAAGKSTIMRTTALAVILSQIGCYI 1020
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
P L+ D I TRLGA D IM G+STF VE +ET +L AT SLVILDELGRG S
Sbjct: 1021 PASSARLTPVDRIMTRLGANDNIMQGKSTFFVELSETKKILSNATPKSLVILDELGRGGS 1080
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA AV L + FATHY+ L F SHP + MA S
Sbjct: 1081 SSDGFAIAEAVLHHLATHLQPVGFFATHYNTLGVSFKSHPQIKPMRMAIVVDQES----- 1135
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRS 1038
+++ FLY+L G P S+G+ VA+M G+P+++V+ A AA K+ EQ S
Sbjct: 1136 --RDITFLYKLEDGTAPGSFGMNVALMCGIPREIVDNAEIAA-----------KNYEQVS 1182
Query: 1039 EFSSLHEE 1046
+EE
Sbjct: 1183 SLKRTYEE 1190
>gi|443311537|ref|ZP_21041164.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 7509]
gi|442778416|gb|ELR88682.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 7509]
Length = 867
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 250/930 (26%), Positives = 401/930 (43%), Gaps = 207/930 (22%)
Query: 238 DPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFY 297
DPS + D+N+R+ P D R L KK+S + Y VK QY LL ++VG F+
Sbjct: 6 DPSSL-DSNQRKSTMPNADYREL-----ERKKLSPMMQHYVEVKEQYPHALLLYRVGDFF 59
Query: 298 ELYELDAEIGHKELDWKITL----SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
E++ DA ++L+ +T +G+ G+ ID LV +G+ + +Q+
Sbjct: 60 EVFFQDACTVSEQLELVLTSIQAGKEIGRVPMSGVPHHAIDRYCAMLVEKGFAIALCDQV 119
Query: 354 ETSEQAKARHTNSVISRKLVNVVTPSTTVD-GTIGPDAVHLLAIKEGNCGPDNGSVV--- 409
E + A A+ N + R++ V+TP T +D G + + LA +VV
Sbjct: 120 EDASVAAAQ--NRQVKREVTKVITPGTLLDEGMLNARRNNFLA-----------AVVIAG 166
Query: 410 --YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRG-----LCKEAQKA 462
+G A+ D + +S L LM++ P EV++ L + +K+
Sbjct: 167 EHWGLAYADISTGEFLT---TQSSSLEHLTQELMRLQPSEVLFPTNAPDLGSLLRPGEKS 223
Query: 463 LRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV-MQH-DIG 520
S ++ + F A +L+Q F ++LE V ++H +
Sbjct: 224 AHLPSCLPSSF-CYALRSQNPFTLAEARSRLLQ---RFR------MRSLEGVGLEHLPLA 273
Query: 521 FSALGGLISHLS--------------RLMLDDVL-------RNGDILPYKVYRDCLRMDG 559
A GGL+ +L L D L RN +I + RD + + G
Sbjct: 274 VRAAGGLLEYLEATQKENPVALQLLRTYTLTDFLIVDSQSRRNLEIT--QTVRDGI-LHG 330
Query: 560 QTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---------------- 602
L+ +D T+ G R LR W PL D++GI +R D ++ L++
Sbjct: 331 SLLWAIDKTSTAMGGRALRRWFLQPLLDIKGIKSRQDTIQELVEDTSLRHDLRQLLRQIY 390
Query: 603 --------------NSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLI---GKK 645
N+ ++ +A L +LP++ RL+ ++ + V P++ G +
Sbjct: 391 DLERLTGRASSGSANARDLVSLADSLLRLPEIARLVENAQSPYLKALQKVPPILEQLGHQ 450
Query: 646 VLKQQVK------VFGSLVK-GLRIAMDLLMLMHKEGHI--------------IPSL--- 681
+ V+ G L++ G+ +D L + ++ + IP+L
Sbjct: 451 IRNHLVESPPLYLTEGGLIRSGINSQLDELRITVEQDKLWIANLEVKEKARTGIPNLKVG 510
Query: 682 -SRIFKPPIFDGSDGLDKF---------LTQFEAAIDSDFPDYQ------NHDVTDLDAE 725
++ F I D+ LT E I D + + D+ L+ E
Sbjct: 511 FNKTFGYYISISRSRADQVPDNYIRKQTLTNEERYITPDLKEKEARILTAKDDLNRLEYE 570
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTA--------SMSSGAMHRPLILPQS 777
S+L + E A A++ DVL FA A M G R +I+
Sbjct: 571 VFSLLRQEVGESAEIIRNTSRAVAAADVLCGFAEVAVYQGYCRPQMVEG---REIIIIDG 627
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLG--EDSDDCL--PRTLLLTGP 833
++P V Q G VPN +LG E+S D L P ++LTGP
Sbjct: 628 RHPVVEQ------------------SLPSGFFVPNSTMLGWEENSPDTLEKPDLVILTGP 669
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
N GKS LR L ++AQ+GCFVP + +L + D IFTR+GA D + TG+STF+VE
Sbjct: 670 NASGKSCYLRQLGLIQLMAQVGCFVPAKEAILGICDRIFTRVGAVDDLATGQSTFMVEMN 729
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953
ETA++L AT SLV+LDE+GRGT+TFDG +IA+AV L + I R +FATHYH + +
Sbjct: 730 ETANILNHATSKSLVLLDEIGRGTATFDGLSIAWAVAEYLAQEIKSRTIFATHYHEMNEL 789
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQEL----VFLYRLTSGACPESYGLQVAVMAGVP 1009
+ P+V NY +EL +FL+++ G +SYG++ +AG+P
Sbjct: 790 ASMMPNVA-------------NYQVTVKELPDQIIFLHQVQPGGADKSYGIEAGRLAGLP 836
Query: 1010 QKV----------VEAASHAALAMKKSIGE 1029
V +E S A+ ++ I E
Sbjct: 837 SVVIGRAKEVMGQIEKHSKIAIGLRTQINE 866
>gi|358063956|ref|ZP_09150552.1| DNA mismatch repair protein mutS [Clostridium hathewayi WAL-18680]
gi|356697825|gb|EHI59389.1| DNA mismatch repair protein mutS [Clostridium hathewayi WAL-18680]
Length = 883
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 241/842 (28%), Positives = 376/842 (44%), Gaps = 143/842 (16%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
+S + Y K QY D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 4 LSPMMQHYVETKKQYHDCILFYRLGDFYEMFFEDAITVARELEITLTGKECGLEERAPMC 63
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G+ +D + +LV +GYKV EQ+E + AK ++ R+++ VVTP T
Sbjct: 64 GVPYHAVDTYLNRLVQKGYKVAIAEQVEDPKLAKG-----LVKREVIRVVTPGTITSAQ- 117
Query: 387 GPDAVHLLAIKEGNCGPDNGSV----VYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
A+ E G V ++G A D + V + ++ L + +
Sbjct: 118 --------ALDETKNNYLMGIVYLGDMFGVAAADISTGDFLVTEVQNERE---LWDEVHK 166
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT------DFLDASEVKKLVQL 496
+P E+I C EA + +G EL VT F +++++
Sbjct: 167 FTPSEII------CNEA-----FYMSGIDLEELKIRYHVTISSLDNHFFSDDSCRRILR- 214
Query: 497 NGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL-------------------SRLMLD 537
Y GS A +D G A G ++ +L M+
Sbjct: 215 EHYRVGSLDGLGLA-----DYDSGVIAAGAVMQYLYETQKSTLEHITTISPYTTGEFMII 269
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
D+ ++ + R+ + LD T+ G RLLR++I PL I R + V
Sbjct: 270 DLSTRRNLELVETMREKQKRGTLLWVLDKTKTAMGARLLRTYIEQPLVHKAQILERQEAV 329
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQ 649
E L + + +YL + DLERL+GR+ + +S +LP I + +
Sbjct: 330 EELNNSYINREEICEYLNPIYDLERLIGRISYKTANPRDLIAFRNSLEMLPHIKNLLGEF 389
Query: 650 QVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDG-SDGLDK---------- 698
+ + G L + L D+ L+ + P ++ I DG S+ D+
Sbjct: 390 RSPLLGRLYEELDTLEDVYDLIFRSIEEEPPITVRDGGIIKDGYSEEADRLRHAKTEGKT 449
Query: 699 FLTQFEAA-----------------------IDSDF----PDYQNHDVTDLDAE--TLSI 729
+L + EA + + F PDY T +AE T S
Sbjct: 450 WLAELEAKEREKTGIKGLKIKFNKVFGYYFEVTNSFKEMVPDYFIRKQTLANAERYTTSE 509
Query: 730 LIE-----------LFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
L E LF + S + E+ +I +VLR +++ + L + ++
Sbjct: 510 LKELEEIIMGAEDKLFSLEYSLFCEIRDSIGA-EVLRIQKAAKAIAGIDVFASLSVVATR 568
Query: 779 NPAVRQD-NGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
N V+ N + IK HP L L V ND LL D+ R ++TGPNM
Sbjct: 569 NNYVKPSINEKGEIHIKNGRHPVVELMLREDLFVANDTLL----DNQKNRVSIITGPNMA 624
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKST +R T L V++AQLG FVP + + L D IFTR+GA+D + +G+STF+VE TE A
Sbjct: 625 GKSTYMRQTALIVLMAQLGSFVPADEADIGLCDRIFTRVGASDDLASGQSTFMVEMTEVA 684
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEF 954
++L+ AT+DSL+ILDE+GRGTSTFDG +IA+AV + + + + LFATHYH LT+
Sbjct: 685 NILRNATKDSLIILDEIGRGTSTFDGLSIAWAVVEHISNTKILGAKTLFATHYHELTELE 744
Query: 955 ASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
+ VT +A +GD ++VFL ++ G +SYG+QVA +AGVP V+E
Sbjct: 745 GTMSGVTNYCIAVK--------EQGD-DIVFLRKIIKGGADKSYGIQVAKLAGVPDTVIE 795
Query: 1015 AA 1016
A
Sbjct: 796 RA 797
>gi|224128348|ref|XP_002320307.1| predicted protein [Populus trichocarpa]
gi|222861080|gb|EEE98622.1| predicted protein [Populus trichocarpa]
Length = 1288
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/313 (44%), Positives = 181/313 (57%), Gaps = 20/313 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L LI F + +W +++ A + +DVL S A+ + G P I+ S + V
Sbjct: 942 LQRLIVCFCKYHDKWRQLVSATAELDVLISLAIASDFYEGPACCPTIVGSSLSSQV---- 997
Query: 787 GGPVLKIKGLWHPF----ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
P L K L HP +LG+ G VPNDI +G R +LLTGPNMGGKSTLL
Sbjct: 998 --PCLSAKKLGHPVLRSDSLGK--GAFVPNDISIGGSGR---ARFILLTGPNMGGKSTLL 1050
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLAVILAQ+G VP E LS D IF R+GA D IM G+STFL E +ETA +L A
Sbjct: 1051 RQVCLAVILAQIGADVPAESFELSPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1110
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T +SLV LDELGRGTST DG AIA +V V ++ CR +F+THYH L ++ V+L
Sbjct: 1111 TCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVDYQKDSKVSL 1170
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HM+C + G +E+ FLYRL GACP+SYG+ VA +AG+P ++ A+ +
Sbjct: 1171 YHMSCQVGNGV-----GVEEVTFLYRLRPGACPKSYGVNVARLAGLPDSILHNAAAKSRE 1225
Query: 1023 MKKSIGESFKSSE 1035
+ G K SE
Sbjct: 1226 FEAVYGRHRKGSE 1238
Score = 209 bits (531), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 243/492 (49%), Gaps = 81/492 (16%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYEL 302
RDA RRRP D YD RTLY+P E K ++ Q+Q+W KS++MD +LFFK+GKFYEL+E+
Sbjct: 285 RDAKRRRPGDVDYDPRTLYLPAEFAKSLTGGQRQWWEFKSKHMDKVLFFKMGKFYELFEM 344
Query: 303 DAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR 362
DA +G KELD + C G E VEKL +GY+V +EQ ET EQ + R
Sbjct: 345 DAHVGAKELDLQYMKGEQPHC---GFPEKNFSLNVEKLARKGYRVLVVEQTETPEQLELR 401
Query: 363 H-----TNSVISRKLVNVVTPSTTVDG---TIGPDAVHLLAIKEGNCGPDNGSV--VYGF 412
+ V+ R++ V+T T +G + PDA +L+A+ E N + ++G
Sbjct: 402 RKEKGSKDKVVKREICAVITKGTLTEGEFLSANPDASYLMALTESRQSLANQGLERIFGV 461
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
VD R+ +G DDA C++L LL ++ P E++ + L E ++ + + +
Sbjct: 462 CVVDVTTSRIILGQFGDDAECSSLCCLLSELRPVEIVKPAKMLSSETERVMVRHTRNPLV 521
Query: 473 LELTPAMAVTDFLDA----SEVKKLVQLNGYFNGSSSPWSKA------------------ 510
EL P +++F DA EVK + + G + +S P +K
Sbjct: 522 NELAP---LSEFWDAERTVQEVKTIYKHIGDLS-ASGPLNKTDLDTTNLNVGEYRPSCLP 577
Query: 511 ---LENVMQHDIG---FSALGGLISHLSRLMLDDVLRNGDIL--------------PY-- 548
LE V + + G SALGG + +L + LD+ L PY
Sbjct: 578 SILLEFVNKGENGSLALSALGGSLYYLKQAFLDETLLRFAKFESLPCSDFCEVAKKPYMI 637
Query: 549 ---------KVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
+++ + D TLY L+ CVT+ GKRLL++W+ PL +E I +R D
Sbjct: 638 LDAAALENLEIFENSRNGDTSGTLYAQLNHCVTAFGKRLLKTWLARPLYHLESIKDRQDA 697
Query: 597 VEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKARVQA----SSCIVLPLIGKKVLKQQV 651
V L N +++ + L LPD+ERLL R+ + +A ++ +VL + K+Q+
Sbjct: 698 VAGLRGVNQPMMLEFQKVLSGLPDIERLLARIFSTSEANGRNANKVVL---YEDAAKKQL 754
Query: 652 KVFGSLVKGLRI 663
+ F S ++G +
Sbjct: 755 QEFISALRGCEL 766
>gi|156549300|ref|XP_001600292.1| PREDICTED: probable DNA mismatch repair protein Msh6 [Nasonia
vitripennis]
Length = 1151
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 182/295 (61%), Gaps = 17/295 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F ++ +WS + I+ +D L S A A + P I + D+ G ++I
Sbjct: 843 FSDQYDKWSNATYNIAVLDCLISLAEYARTCVTCI--PTIFDDT-------DDQGIFIEI 893
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ HP + EN +PND ++ + + P ++LTGPNMGGKSTL+R L I+AQ
Sbjct: 894 REGKHPCIVSENF---IPNDTVIA--TAEAAP-LIILTGPNMGGKSTLMRQVGLITIMAQ 947
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC VP C L+L D IFTRLGA D IM G+STFLVE +ET+++LQ AT+ SLV+LDEL
Sbjct: 948 IGCHVPATDCNLTLVDRIFTRLGANDDIMAGQSTFLVELSETSAILQHATKYSLVLLDEL 1007
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIA +V L +I CR LF+THYH L +++ + +VTL HMAC +S+
Sbjct: 1008 GRGTSTYDGTAIAASVVEALT-KIQCRTLFSTHYHTLVEDYKMNKNVTLAHMACMVESDD 1066
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
E+ ++ + FLY+L+ GACP+SYG A +AGVP + + A A ++ +
Sbjct: 1067 ED-QISEENVTFLYKLSEGACPKSYGFNAARLAGVPASITKRAQSIATKLEAEVN 1120
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 200/459 (43%), Gaps = 64/459 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K+E+L KIRD +RR DP YD RT+Y+PP+ L K + + +Q+W +KS + D +LFFK
Sbjct: 193 KYEFLQKDKIRDNKKRRSTDPDYDPRTVYVPPDFLDKQTPAMRQWWVLKSDHYDCVLFFK 252
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA G EL G+ G E L+ RGYKV RIEQ
Sbjct: 253 VGKFYELYHMDAVTGVNELSLTFMR---GEFAHSGFPEIAYGRFSASLIERGYKVARIEQ 309
Query: 353 LETSE--------QAKARHTNSVISRKLVNVVTPSTTV-----DGTIGPDAVHLLAIKEG 399
E E K + V+ R++ + T T V P + +LL+I E
Sbjct: 310 TENPEMMSQRCAKMGKTTKFDKVVKREICQISTKGTRVYTAQDAEASAPTSTYLLSIIEK 369
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N S YG F+D +G DD + L LL P VIYE L +
Sbjct: 370 QERNQNIS-SYGVCFIDTTIGDFNLGQFQDDRCNSRLLTLLAHYPPAHVIYERNNLSQTT 428
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG---SSSPWSKALENVM- 515
K L G+ L + F +++V ++ YF SS W K LE +
Sbjct: 429 LKILNNLLPGAMKEALQKEV---QFWSSTKVLNVLHEADYFKNEEDSSFSWPKGLEPYLN 485
Query: 516 -----------QHDIGFSALGGLISHLSRLMLDDVL--------------------RNGD 544
+ + +ALGG + L LD L +G
Sbjct: 486 DGDSLGLTPLEEKQLAVNALGGCVYLLKNYQLDHQLLAQGRFKTYVPPDFSVNAEKSDGT 545
Query: 545 ILPYKVYRDCLRM--------DGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
L Y + D + + +G + LD+C T+ GKRLLR W+C P I R +
Sbjct: 546 KLAYNMVLDAMTITNLRVLGNEGSLIKTLDNCCTAFGKRLLREWVCRPSCRKSVIVERQN 605
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
+ L+ N +VV V L LPDLERLL ++ + A+
Sbjct: 606 AITELIDNPDVVQEVRSKLSGLPDLERLLSKIHVQGNAA 644
>gi|242000966|ref|XP_002435126.1| sperm protein, putative [Ixodes scapularis]
gi|215498456|gb|EEC07950.1| sperm protein, putative [Ixodes scapularis]
Length = 401
Score = 236 bits (601), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 130/278 (46%), Positives = 175/278 (62%), Gaps = 13/278 (4%)
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
+W + ++ +D L S A +S +G P IL + P L I+G HP
Sbjct: 132 EWEVAVQCLAILDCLLSLAQYSSSLTGTACTPRILRDGEVSRT------PRLSIQGGRHP 185
Query: 800 FALGENGGLP-VPNDILLGE-DSDDCLPR---TLLLTGPNMGGKSTLLRATCLAVILAQL 854
L GG +PN I LG+ + DD PR L+TGPNMGGKSTL+R L VI+AQ+
Sbjct: 186 CLLKHLGGENLIPNSIALGDYEDDDSAPRGARLALVTGPNMGGKSTLMRQAGLLVIIAQM 245
Query: 855 GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELG 914
G VP E C L+L D IFTRLGA+DRI +G +TF VE ET+++L+ AT+ SLV+LDELG
Sbjct: 246 GAKVPAESCELTLVDRIFTRLGASDRITSG-NTFFVEVNETSAILRHATRHSLVLLDELG 304
Query: 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSE 974
RGTST DG +IA+AV ++L +I+CR LF+THYH L + F S P+V L HMAC ++ +E
Sbjct: 305 RGTSTHDGMSIAHAVVKELSTKIHCRTLFSTHYHHLVEGFTSDPNVYLGHMACMVENENE 364
Query: 975 NYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
+ + +VFLY+ GACP+SYG A +AG+P V
Sbjct: 365 D-DPTQETIVFLYKFARGACPKSYGFNAAKLAGIPPDV 401
>gi|451982372|ref|ZP_21930688.1| DNA mismatch repair protein mutS [Nitrospina gracilis 3/211]
gi|451760378|emb|CCQ91973.1| DNA mismatch repair protein mutS [Nitrospina gracilis 3/211]
Length = 882
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 225/866 (25%), Positives = 379/866 (43%), Gaps = 180/866 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K ++ D +LFF++G FYE++ DA+ K LD +T K + G+
Sbjct: 19 QQYQSIKKEFPDAILFFRMGDFYEMFNEDAKDASKLLDIALTSRNKNKPNAIPMCGVPHH 78
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI-GPDA 390
+ + +LV G + EQ+E +Q K ++ R++V V+TP T +D + P +
Sbjct: 79 SANMYISRLVKSGKTIAICEQMEDPKQTKG-----LVRREVVRVITPGTVLDDNLLDPKS 133
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN----DDASCAALGALLMQVSPK 446
H L S+ +G AAL + G ++ L L ++ PK
Sbjct: 134 HHFLV-----------SLYFGKEQTGLAALDMSTGLFKVTELPPSAENLLQDELAKLDPK 182
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAM--AVTDFL-DASEVKKLV-------QL 496
E++ + AG AL T V D++ S+ +++ L
Sbjct: 183 EILI--------PENTANGNGAGPPALSGTGYFIQPVEDWMFHHSQAHRILVEQFKTKTL 234
Query: 497 NGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
+G+ W A+ SA G L+ +L L++ L +D +
Sbjct: 235 DGF---GCEAWPAAV----------SAAGALVQYLKETQ-KSALQHITSLSTFSTQDSMM 280
Query: 557 MDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
+D T+ +LD+ T G R LR WI PL +E I RLD+V
Sbjct: 281 LDQSTINSLELVQSSDGQRKHSLLGHLDATCTPLGARRLREWILKPLIRLEAIEQRLDLV 340
Query: 598 ----EYLMKNSEV--------------------------VMVVAQYLRKLPDLERLLGR- 626
E+L++ +++ ++ + LR LP+++ ++GR
Sbjct: 341 GHYREHLLERNDLRERLKHIFDLERLLGKISMATCTPRDLIALKNSLRALPEIQEMIGRC 400
Query: 627 ---------------------VKARVQASSCIVLPLIG--KKVLKQQVKVFGSLVKGLRI 663
+ +++ + + G K Q++ S++K
Sbjct: 401 PLPAMSAIRDGWDNLDNLYQGIDEQIEDDPPLNIKDGGLIKPGCDQELDRLKSIMKDSNQ 460
Query: 664 AMDLLMLMHKEGHIIPSL----SRIFKPPIFDGSDGLDKF---------LTQFEAAIDSD 710
A+ L KE IP L ++I+ + LD+ L E I +
Sbjct: 461 AIANLEAREKERTGIPQLKVGYNKIYGYYLEVTKKNLDRVPDDYIRKQSLVNAERFISPE 520
Query: 711 FPDYQNHDVTDLDAETLSILIELFIE-------KASQWSEVIHAISCIDVLRSFAVTASM 763
Y++ ++T + + I LF E + ++ + I +D L FA A
Sbjct: 521 LKQYES-EITGAEEKVQIIEQRLFHEVRQSVAAEGARIQAMAKRIGELDALLGFAQIA-- 577
Query: 764 SSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDD 822
+N Q + G L+I+ HP + P +PND L D D+
Sbjct: 578 ------------HQQNYCRPQMDDGDALRIQNGRHPLVELIDPNQPFIPNDTHL--DCDE 623
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
+ ++TGPNM GKST LR L V++AQ+GCFVP E + L D IF+R+GA D +
Sbjct: 624 H--QVAIITGPNMAGKSTYLRQVALIVLMAQIGCFVPAEEAEIGLVDRIFSRVGAQDHLQ 681
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV--FRQLVERINCR 940
G+STF+VE ETA++L AT+ SL++LDE+GRGTSTFDG +IA+A+ F Q I +
Sbjct: 682 KGQSTFMVEMNETANILNNATRRSLIVLDEIGRGTSTFDGISIAWAIVEFLQGPGHIGAK 741
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
LFATHYH LT+ L+ + + K+ + + + +++FL ++ G +SYG+
Sbjct: 742 TLFATHYHELTE---------LERLFHSVKNYNVQIKEWNDQIIFLRKIVPGGADKSYGI 792
Query: 1001 QVAVMAGVPQKVVEAASHAALAMKKS 1026
VA +AG+P++V++ A+ ++ S
Sbjct: 793 HVARLAGLPEQVLQRANEVLFNLENS 818
>gi|330800615|ref|XP_003288330.1| hypothetical protein DICPUDRAFT_55353 [Dictyostelium purpureum]
gi|325081628|gb|EGC35137.1| hypothetical protein DICPUDRAFT_55353 [Dictyostelium purpureum]
Length = 979
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 187/339 (55%), Gaps = 38/339 (11%)
Query: 687 PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIH 746
P + + D L+ + I ++F Y NH +S+ +
Sbjct: 627 PSLLEERDELEVLSKEVSKKIQANFSVYFNH-----------------------FSKAVQ 663
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +D L S + S M RP+ + SK P N G L ++ + HP + G
Sbjct: 664 RLAQLDCLLSLFKVSCQSGIQMCRPIFV--SKIPT----NNGGFLDVRDMRHPCIYSKAG 717
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+PND+ L + ++ P L+LTGPNMGGKSTLLR C+ VI+AQ+GCFV C +S
Sbjct: 718 DDFIPNDLSL--NVENSPPSILVLTGPNMGGKSTLLRQACILVIMAQMGCFVSASSCEMS 775
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTRLGA D I+ G+STF+VE ET SVL+ AT SLVILDELGRGTSTFDGY+IA
Sbjct: 776 IVDRIFTRLGANDNILAGQSTFMVELQETCSVLKYATNRSLVILDELGRGTSTFDGYSIA 835
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
Y+V + + + +FATHY L E + ++ +M C + ++ ++FL
Sbjct: 836 YSVLNYITKNLKSLCIFATHYQSLAMEPSIRNEISTGYMTC-------QVDEEEKRVIFL 888
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
Y+L G C +SYGL VA MAG+P+++V A + M+K
Sbjct: 889 YKLAKGICQKSYGLHVAAMAGLPKEIVAKAEKKSEQMEK 927
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 142/424 (33%), Positives = 216/424 (50%), Gaps = 54/424 (12%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
++D N + P YD RTL IP L K S ++Q+W++KS+Y D ++FFK GKFYELYE
Sbjct: 67 VKDGNGNKKGSPDYDPRTLQIPASCLTKFSPFERQFWDIKSKYYDTVVFFKKGKFYELYE 126
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS----- 356
DA+IGH+ L K+T R VG+ ES KL+ GYKV +++Q+ETS
Sbjct: 127 NDADIGHQILHLKMT--DRVNMRMVGVPESAFTHWASKLINLGYKVAKVDQMETSIGMNK 184
Query: 357 ---EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYG 411
E+ +S+I R+L +++T T +D ++ D + +L+AIKE D S YG
Sbjct: 185 RQNEKGGRNKKDSIIQRELTSILTAGTLLDESMISDKTSTYLMAIKE-----DEYSNKYG 239
Query: 412 FAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA 471
FVD + ++ +I+DD + LL+Q+ PKEV+YE + + +++ A
Sbjct: 240 VCFVDVSIGEFFLCSIDDDENRMQFETLLLQMMPKEVVYEKGAISAKTMSIMKRVLAT-- 297
Query: 472 ALELTPAMAVT---DFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLI 528
+ P M ++ D SE V N S ++L+ + + +LGG +
Sbjct: 298 ---VKPVMNARLSLEYWDPSETLNRV------NDSCGRIPESLKEMKNETLLICSLGGCL 348
Query: 529 SHLSRLML-DDVLRNGDILPYKVYR--DCLRMDGQTL--------------------YLD 565
S+LS + + VL G + + L +DGQ L +D
Sbjct: 349 SYLSDIKIAQQVLEQGRFKRFNSLDVGNSLILDGQCLVNLEIFNNSTDGTTEGTLFKLMD 408
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
CVTS GKRL R WIC PL + E I +R +E+L N + + V L K+PDLER+L
Sbjct: 409 RCVTSFGKRLFRQWICRPLANKERIVDRQRAIEHLRDNPDHLQKVISILTKIPDLERMLA 468
Query: 626 RVKA 629
R++A
Sbjct: 469 RIRA 472
>gi|320593113|gb|EFX05522.1| DNA mismatch repair protein [Grosmannia clavigera kw1407]
Length = 1190
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 229/442 (51%), Gaps = 52/442 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D NR +P P +DK T+++PP A K S +KQYW +K + D ++FFK
Sbjct: 267 RYSWL--ANIMDMNRNKPGHPDFDKSTVFVPPNAWNKFSPFEKQYWEIKQKLWDTIVFFK 324
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA IGH+ D K+T R VG+ ES +D V + VA+GYKV R++Q
Sbjct: 325 KGKFFELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQ 382
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
+E++ + R + +I R+L V+T T V+G++ D A AIK+
Sbjct: 383 MESALGKEMRERGASAVKSKQDKIIRRELACVLTRGTLVEGSMLQDDMATFCAAIKQDVV 442
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+G V+G AFVD A + + DDA + Q++P+E+I E + + K
Sbjct: 443 ---DGKPVFGIAFVDAATGQFFFSEFEDDAELTKFETFVAQMAPQELILEKNCI---STK 496
Query: 462 ALRKFSAGSAALEL-TPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQH 517
ALR + + + + ++F DA ++ + GYF +G + W K L V +
Sbjct: 497 ALRILKNNTTPMTIWNYRKSGSEFWDADTTRRELDCGGYFTADDGGNEDWPKKLAEVREK 556
Query: 518 DIGFSALGGLISHLSRLMLD-DVLRNGDILPYK-VYRD-CLRMDGQTL------------ 562
SA G L+++L L L+ +++ + Y ++R+ L +DGQTL
Sbjct: 557 PFLMSAFGALVNYLRDLKLERNLVSQANFEMYNPIHRNGTLILDGQTLINLEIFSNTVNG 616
Query: 563 --------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
L+ C+T GKRL R W+CHPL D+ IN RLD V+ L + + + +
Sbjct: 617 GPEGTLFNLLNRCITPFGKRLFRKWLCHPLCDIRKINERLDAVDMLNADRSLRDQFSSEM 676
Query: 615 RKLPDLERLLGRVKARVQASSC 636
K+PDLERL +R+ A SC
Sbjct: 677 CKMPDLERL----ASRIHAGSC 694
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 158/287 (55%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F A W E I I+ +D L S A +S RP + + ++ V++
Sbjct: 868 FDADAEIWQEAIRIIAQLDCLISLAKASSSLGQPSARPTFVDEERS----------VVEF 917
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PNDI LG D+ + LLTG N GKST+LR +C+AVI+AQ
Sbjct: 918 EELRHPCMLNTVDDF-IPNDIRLGGDAANIS----LLTGANAAGKSTILRMSCIAVIMAQ 972
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 973 IGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1032
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I C FATHYH L EF +HP + + M ++
Sbjct: 1033 GRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFENHPEICAKRMQILV--DN 1090
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
EN + + FLYRL G S+G+ A M G+P +V+E A AA
Sbjct: 1091 EN-----RRVTFLYRLEDGVAEGSFGMHCAAMCGIPDRVIEEAEVAA 1132
>gi|71282195|ref|YP_270792.1| DNA mismatch repair protein MutS [Colwellia psychrerythraea 34H]
gi|90109844|sp|Q47WN0.1|MUTS_COLP3 RecName: Full=DNA mismatch repair protein MutS
gi|71147935|gb|AAZ28408.1| DNA mismatch repair protein MutS [Colwellia psychrerythraea 34H]
Length = 872
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 237/867 (27%), Positives = 384/867 (44%), Gaps = 196/867 (22%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI- 333
+QY +K+++ L+F+++G FYEL+ DA+ LD I+L+ GK I +G+
Sbjct: 16 RQYLTIKAEFPHTLIFYRMGDFYELFFDDAKKASDLLD--ISLTARGKTGGNAIPMAGVP 73
Query: 334 ----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD 389
++ + KLVA G V EQ+ +K + RK+V V+TP T D + D
Sbjct: 74 YHAAENYLAKLVALGESVAICEQIGDPATSKGP-----VERKVVRVITPGTVSDEALLVD 128
Query: 390 AV-HLLAIKEGNCGPD-----NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+L+ N P+ + + +G A++D A+ R + + + L A L ++
Sbjct: 129 RQDNLIVAIVDNQSPNAKLKTSSAPAFGLAYLDMASGRF---VLTEPQTAEQLQAELQRL 185
Query: 444 SPKEVIY----ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
SP E++Y ++ L E +K LR+ L+ ++ F D E L G+
Sbjct: 186 SPAELLYSESLQDFSLI-EQRKGLRRRPEWEFDLDTAISLLNKQF-DTKE------LTGF 237
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLS----------RLMLDDVLRNGDILPYK 549
V +G +A G L ++ R ++ + G +L
Sbjct: 238 -------------GVDDKPLGLAAAGCLFQYVKDTQRTALPHIRAIVCESANKGVVLDAA 284
Query: 550 VYRDCLRMDGQTLY----------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
R+ L + Q L+ LD T G RLL+ W+ PL+D+ +NNR + V
Sbjct: 285 TRRN-LELT-QNLHGGLDNTLAAILDKSSTPMGSRLLKRWLHFPLRDLTVLNNRQNTVSD 342
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV---KARVQASSCIVLPLIGKKVLKQQVKVFGS 656
++ +++ + L+ L D+ER++ R+ AR + + + + L+Q ++
Sbjct: 343 IIA-LDLIAPIQPLLKGLGDIERIVSRIALGSARPRDFARL------RHALQQLPELQNE 395
Query: 657 LVKGLRIA-MDLLMLMHKEGHIIPSLSRIF------KPPIF------------------- 690
L GL + + L + ++ +P L + PP+
Sbjct: 396 LKSGLTESPTNYLATIAQQSQPMPQLEGLLVHAIVENPPVLIRDGGVIAPGYNNELDVLR 455
Query: 691 DGSDGLDKFLTQFE-----------------------------AAIDSDFPD-------- 713
D SDG +FL Q E AA+D PD
Sbjct: 456 DLSDGATEFLAQLEQREKERTGIHSLKVGYNRVHGFFIEMSRTAAVD--VPDDYIRRQTL 513
Query: 714 ----------YQNHDVTDLDAETL------SILIELF---IEKASQWSEVIHAISCIDVL 754
+ H+ L A++ S+ ELF + +Q ++ AI+ +DVL
Sbjct: 514 KNNERFITEELKQHEEKVLSAQSKFLALEKSLYQELFDKVLPDLAQLQQLSQAIAELDVL 573
Query: 755 RSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI 814
+FA R L L K V + P + I H + N +
Sbjct: 574 TTFA----------ERALALNYVKPSLVEE----PGISIDAGRHVVVEQMTNDAFIANPV 619
Query: 815 LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR 874
LL E + L++TGPNMGGKST +R T L V+LA +GC+VP + + L D IFTR
Sbjct: 620 LLTEQR-----KMLIITGPNMGGKSTYMRQTALIVLLAHIGCYVPADNATIGLVDRIFTR 674
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+GA+D + +G STF+VE TETA++L AT SLV+LDE+GRGTST+DG ++A+A L
Sbjct: 675 IGASDDLASGRSTFMVEMTETANILHNATDKSLVLLDEIGRGTSTYDGLSLAWACAEMLA 734
Query: 935 ERINCRLLFATHYHPLT---KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTS 991
+ LFATHY LT + ++ +V L M + D +VF++ +
Sbjct: 735 LKTKAFTLFATHYFELTLLAGQISTLANVHLDAM------------EHDDNIVFMHAVQE 782
Query: 992 GACPESYGLQVAVMAGVPQKVVEAASH 1018
GA +S+GLQVA +AGVP+ V++ A
Sbjct: 783 GAASKSFGLQVAQLAGVPKTVIKRAKQ 809
>gi|451852581|gb|EMD65876.1| hypothetical protein COCSADRAFT_198733 [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 243/479 (50%), Gaps = 55/479 (11%)
Query: 196 IGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEA-DTTSKFEWLDPSKIRDANRRRPDDPL 254
I D +N ++ K + L+ ++ + A + +++ WL + ++DA+R PD P
Sbjct: 246 IYDPENPTVFKPRKAVPSLKKELSVRAKAKPSASEPEARYPWL--ANMQDADRHPPDHPD 303
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD RTL+IPP A ++ S +KQYW +KS++ D ++FFK GKFYELYE DA IGH+ D K
Sbjct: 304 YDPRTLFIPPAAWREFSPFEKQYWEIKSKWWDTIVFFKKGKFYELYEKDASIGHQLFDLK 363
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTN--------- 365
+T R VG+ E+ +D + VA GYKV R++Q+E++ + R +
Sbjct: 364 LT--DRVNMRMVGVPEASLDMWATQFVAAGYKVARVDQMESALGKEMRERDDKGKTPKKA 421
Query: 366 -----SVISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
VI R+L V+T T VD G + + + + +AIKE + + +G AFVD A
Sbjct: 422 EKKGKEVIRRELATVLTSGTLVDTGMLQSEMSTYCMAIKEID---RDNLPAFGIAFVDTA 478
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPA 478
+ + DD L+ Q+ P E++ E C A KALR + +
Sbjct: 479 TAQFQLCEFTDDIDMTKFETLIAQMRPGELLLEKS--CVSA-KALRILKNNTGPTTIWNW 535
Query: 479 MAVT-DFLDASEVKKLVQLNGYFNGSS----SPWSKALENVMQHDIGFSALGGLISHLSR 533
+ + +F A + +++N YF + W L + ++ SA G L+ +L
Sbjct: 536 LKLNKEFWPADITIREIEVNKYFELPTEDNIEAWPPVLREAREKELVMSAFGALLQYLRT 595
Query: 534 LMLD-DVLRNGDILPYKVYRDC--LRMDGQTL--------------------YLDSCVTS 570
LM++ D++ G+ Y R L +DGQ+L L+ C+T
Sbjct: 596 LMIERDLVTLGNFQWYDPIRKATSLVLDGQSLINLEIFANTFDGATEGTLFAMLNRCITP 655
Query: 571 SGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
GKRLLR W+CHPL D + IN RLD V+ L K+S ++ + L KLPDLERL+ RV A
Sbjct: 656 FGKRLLRQWVCHPLADAQKINARLDAVDALNKDSAIMENFSGSLSKLPDLERLISRVHA 714
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 157/296 (53%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + + F E W + I+ +D L S A ++ RP+ + +
Sbjct: 882 EVATRFCQRFDEDYKTWLAAVKIIAQLDCLISLAKASASLGEPSCRPVFVEGERT----- 936
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
V++ + L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 937 -----VVEFEELRHPCMLNTVDDF-IPNDIKLGGDEANIS----LLTGANAAGKSTILRM 986
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AVILAQ+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 987 TCIAVILAQVGCYLPCTSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETQKILSEATS 1046
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + R+ C FATHY L KEF HP V +
Sbjct: 1047 RSLVILDELGRGTSSYDGVAVAQAVLHDVATRVGCVGFFATHYRSLAKEFEFHPEVQNKR 1106
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M S++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1107 MRIHVDDESKS-------ITFLYKLEEGVAEGSFGMHCAAMCGIPSKVIEDAEKAA 1155
>gi|451997168|gb|EMD89633.1| hypothetical protein COCHEDRAFT_1194981 [Cochliobolus
heterostrophus C5]
Length = 1213
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 241/479 (50%), Gaps = 55/479 (11%)
Query: 196 IGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEA-DTTSKFEWLDPSKIRDANRRRPDDPL 254
I D +N ++ K + L+ ++ + A + +++ WL + ++DA+R PD P
Sbjct: 246 IYDPENPTVFKPRKVVPSLKKELSVRAKAKPSASEPEARYPWL--ANMQDADRHPPDHPD 303
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD RTL+IPP A + S +KQYW +KS++ D ++FFK GKFYELYE DA IGH+ D K
Sbjct: 304 YDPRTLFIPPAAWRDFSPFEKQYWEIKSKWWDTIVFFKKGKFYELYEKDASIGHQLFDLK 363
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTN--------- 365
+T R VG+ E+ +D + VA GYKV R++Q+E++ + R +
Sbjct: 364 LT--DRVNMRMVGVPEASLDMWATQFVAAGYKVARVDQMESALGKEMRERDDKGKTPKKA 421
Query: 366 -----SVISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
VI R+L V+T T VD G + + + + +AIKE + + +G AFVD A
Sbjct: 422 EKKGKEVIRRELATVLTSGTLVDTGMLQSEMSTYCMAIKEID---RDNLPAFGIAFVDTA 478
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPA 478
+ + DD L+ Q+ P E++ E C A KALR + +
Sbjct: 479 TAQFQLCEFTDDIDMTKFETLIAQMRPGELLLEKS--CVSA-KALRILKNNTGPTTIWNW 535
Query: 479 MAVT-DFLDASEVKKLVQLNGYFNGSS----SPWSKALENVMQHDIGFSALGGLISHLSR 533
+ + +F A + ++ N YF + W L + ++ SA G L+ +L
Sbjct: 536 LKLNKEFWPADITIREIEANNYFESPTEDNIEAWPAVLREAREKELVMSAFGALLQYLRT 595
Query: 534 LMLD-DVLRNGDILPYKVYRDC--LRMDGQTL--------------------YLDSCVTS 570
LM++ D++ G+ Y R L +DGQ+L L+ C+T
Sbjct: 596 LMIERDLVTLGNFQWYDPIRKATSLVLDGQSLINLEIFANTFDGATEGTLFAMLNRCITP 655
Query: 571 SGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
GKRLLR W+CHPL D + IN RLD V+ L K+S ++ + L KLPDLERL+ RV A
Sbjct: 656 FGKRLLRQWVCHPLADAQKINARLDAVDALNKDSAIMENFSGSLSKLPDLERLISRVHA 714
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 157/296 (53%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + + F E W + I+ +D L S A ++ RP+ + +
Sbjct: 882 EVATRFCQRFDEDYKIWLAAVKIIAQLDCLISLAKASASLGEPSCRPVFVEGERT----- 936
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
V++ + L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 937 -----VVEFEELRHPCMLNTVDDF-IPNDIKLGGDEANIS----LLTGANAAGKSTILRM 986
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AVILAQ+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 987 TCIAVILAQVGCYLPCTSARLTPVDRIMSRLGANDNIFAAQSTFFVEMSETQKILSEATS 1046
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + R+ C FATHY L KEF HP V +
Sbjct: 1047 RSLVILDELGRGTSSYDGVAVAQAVLHDVATRVGCVGFFATHYRSLAKEFEFHPEVQNKR 1106
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M S++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1107 MRIHVDDESKS-------ITFLYKLEEGVAEGSFGMHCAAMCGIPSKVIEDAEKAA 1155
>gi|189201826|ref|XP_001937249.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984348|gb|EDU49836.1| DNA mismatch repair protein mutS [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1192
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 231/460 (50%), Gaps = 55/460 (11%)
Query: 215 QDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQ 274
+D + +K ++ ++ WL + +DA+R D P YD RTLY+PP A +K+SA +
Sbjct: 244 RDPIKKIKERPSASEPETRHPWL--AHQQDADRHPIDHPDYDPRTLYVPPHAFEKLSAFE 301
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
KQYW +KS++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D
Sbjct: 302 KQYWEIKSKWWDTVVFFKKGKFYELYEKDATIGHQLFDLKLT--DRVNMRMVGVPEASLD 359
Query: 335 DAVEKLVARGYKVGRIEQLE---------------TSEQAKARHTNSVISRKLVNVVTPS 379
+ VA GYKV R++Q+E T ++A N VI R+L V+T
Sbjct: 360 MWATQFVAAGYKVARVDQMESALGKEMRERDDKGKTPKKAAGGKENKVIRRELATVLTSG 419
Query: 380 TTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
T VD G + + + + +AIKE DN +G AFVD A + + DD
Sbjct: 420 TLVDTGMLQSEMSTYCMAIKE--IDRDNLP-AFGVAFVDTATAQFQLCEFTDDVDMTKFE 476
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQL 496
L+ Q+ P E++ E + + + L+ + + L P +F A + +++
Sbjct: 477 TLIAQMRPGELLLEKSCVSAKVLRILKNNTPPTTIWNWLKPN---KEFWPADIAIRELEV 533
Query: 497 NGYFNGSS----SPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVY 551
N YF + W L + ++ SA G L+ +L LM++ D++ G+ Y
Sbjct: 534 NNYFESPTEDNIEAWPAVLREAREQELVMSAFGALLQYLRTLMIERDLVTLGNFQWYDPI 593
Query: 552 RDC--LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEG 589
R L +DGQ+L L+ C+T GKRLLR W+CHPL D
Sbjct: 594 RKATSLVLDGQSLINLEIFANTFDGSAEGTLFAMLNRCITPFGKRLLRQWVCHPLADAAK 653
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
IN RLD V+ L +S ++ + L KLPDLERL+ RV A
Sbjct: 654 INARLDAVDALNADSSIMDNFSSSLSKLPDLERLISRVHA 693
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 161/296 (54%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + + F E W + I+ +D L S A +S ++ P P V +
Sbjct: 861 EVATRFCQRFDEDYKVWLAAVKIIAQLDCLISLA----KASASLGEPSCRP------VFE 910
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
+ V++ + L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 911 EGKRTVVEFEELRHPCMLNTVADF-IPNDIRLGGDGANIS----LLTGANAAGKSTILRM 965
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AVILAQ+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 966 TCIAVILAQVGCYLPCTSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETQKILSEATP 1025
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + R+ C FATHY L KEF HP V +
Sbjct: 1026 RSLVILDELGRGTSSYDGVAVAQAVLHDISTRVGCVGFFATHYRSLAKEFEFHPEVQNKR 1085
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M +S++ + FLY+L G S+G+ A M G+P+KV+E A AA
Sbjct: 1086 MRIHVDDDSKS-------ITFLYKLEEGVAEGSFGMHCAAMCGIPKKVIENAEKAA 1134
>gi|403350104|gb|EJY74495.1| MutS domain III family protein [Oxytricha trifallax]
Length = 1292
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 192/327 (58%), Gaps = 35/327 (10%)
Query: 714 YQNHDVTDL-----DAET------LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTAS 762
YQ+ D+ ++ DAE + L E+F + + A+ C L A
Sbjct: 953 YQSDDLREMILQLEDAEEQFKDALVPFLREMFKKFYAHRQTFTRAVQCAAELDCLCALAI 1012
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLP-------VPN 812
+SS P+ P+ + ++ P ++++ + HP + ++ L +PN
Sbjct: 1013 ISSNEDQGPMTRPE----IITDNDDMPYIELRQMRHPCVEEQMAKSSLLSYQAPKRFIPN 1068
Query: 813 DILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
D ++G ++S++ P LL+TGPNMGGKSTLLR TCLA I+AQ+GC+VP +C L++ D
Sbjct: 1069 DCVMGTLKNSEEKHPNILLITGPNMGGKSTLLRQTCLASIMAQIGCYVPASLCRLTIVDR 1128
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
+FTR+GA+DRI+ +STF VE ET +++++ATQ+SLVI+DELGRGTSTFDGY+IA++V
Sbjct: 1129 VFTRIGASDRILENKSTFFVELEETKTIVEQATQNSLVIMDELGRGTSTFDGYSIAHSVL 1188
Query: 931 RQLVERINCRLLFATHYHPLTKEFAS-HPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+ I CR LF THYH L +F V L HM +F+ + + ++ F Y+
Sbjct: 1189 SYIANTIKCRTLFTTHYHMLVDDFVHMQDRVGLYHMKSSFE-------EKENKVEFKYKF 1241
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAA 1016
G P+SYG+ VA +AG+ ++V+E A
Sbjct: 1242 MPGVAPQSYGIYVAKLAGINERVLELA 1268
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 69/447 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
F W + IRD RRPD+ YD TL+IP + LK M+ ++YW +KS+ D ++F++
Sbjct: 317 FTWKE--YIRDLEGRRPDEEDYDPSTLFIPDQDLKNMTPGMQKYWEIKSKNFDKIVFYRW 374
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
G+++ LY D+ I K LD I K +G S + + +EKLV GYKV EQ
Sbjct: 375 GEWFILYYQDSVICSKILDLVIPPRQYQKM--IGFYNSQLKENIEKLVNHGYKVAVAEQT 432
Query: 354 ETSEQAKAR-------------HTNSVISRKLVNVVTPSTTV---DGTIGPDAVHLLAIK 397
ET +Q R + V+ R++ + + T DG + D ++L+
Sbjct: 433 ETGKQLAKRVSMIKDEGGSTGDNDFKVVRREVAQIYSKGTFYNLDDGGVDYDTKYVLSYI 492
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY-ENRGLC 456
+ D + +GF + D + L+ ++G +DD + L +Q+ P E I N G
Sbjct: 493 Q-----DQQNNRFGFCYFDTSTLKFFIGQFDDDFTLKQFRTLCLQIRPVETIVPSNVGDK 547
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSSSPWSKALENVM 515
E+ L+ + P+++ + + + +VQ L YF W ++N++
Sbjct: 548 NESVMILKNSP-------MPPSISYLSMQELHDDEVIVQKLEKYFGQVHEDWPDTIKNLI 600
Query: 516 QHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR----------------------- 552
+ + L LS + L+ +L+ I+P +
Sbjct: 601 FNQEKRNPLAIQAFGLSVIYLEQLLQAETIIPVADFYTQDEHKQELMQSGNMVIDAQAIE 660
Query: 553 --DCLRMDGQ----------TLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ L + G+ + C TS GKRLL+ W+ PLKD IN RLD V L
Sbjct: 661 HLELLEIPGRSKNHGEGSFFSFLSKGCATSFGKRLLKRWVVGPLKDAVKINQRLDSVSDL 720
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
++ V + +K+PD+ERLL ++
Sbjct: 721 VREQVVRDKLQAKFKKIPDIERLLSKI 747
>gi|338814536|ref|ZP_08626550.1| DNA mismatch repair protein MutS [Acetonema longum DSM 6540]
gi|337273472|gb|EGO62095.1| DNA mismatch repair protein MutS [Acetonema longum DSM 6540]
Length = 868
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 231/827 (27%), Positives = 390/827 (47%), Gaps = 128/827 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K Q+ + +LFF++G FYE++ DAE+ +EL+ +T G ++ G+
Sbjct: 10 EQYRDIKRQHQEEILFFRLGDFYEMFFTDAELASRELEITLTSRDGGPGTRIPMCGVPYH 69
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
++ + KL+ +GYKV EQ+E +QA+ ++ R+++ ++TP GT+ DA
Sbjct: 70 AAENYIAKLINKGYKVAICEQVEDPKQAQG-----IVRREVIKIITP-----GTVLSDA- 118
Query: 392 HLLAIKEGN----CGPDNGSVVYGFAFVDCAA----LRVWVGTINDDASCAALGALLMQV 443
LL K N ++ SV A VD + + G ++C L L+
Sbjct: 119 -LLQAKTNNYLVALHEEDQSVC--LAAVDISTGECQWTAFSGVNRIASTCDHLFTLM--- 172
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL-NGYFNG 502
P E+++ G+ EA + +R F+A + M T L+ SE+ L QL +F
Sbjct: 173 -PAEILFA--GVFSEAVQ-IRNFAAN----RIPGCMDSTIKLEDSEL--LRQLPQQHFVP 222
Query: 503 SSSPWSKALENVMQHDIGF--SALGGLISHLSRL---------MLDDV-LRNGDILPYKV 550
P + + + + + + +SH+++L +LD + LRN ++ +
Sbjct: 223 EELPEDQGALTCISYLLYYLHQTVKSDLSHINKLTQFIFGEHLVLDAIALRNLEVT--RN 280
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGI-NNRLDVVEYLMK------- 602
RD + D +D T+ G RLL+ W+ PLK + I N + V E + K
Sbjct: 281 LRDGGKKDTLLAVIDFTKTAMGGRLLKKWLESPLKKISEIRNRQEAVAELIGKPSLRTIL 340
Query: 603 ----------------------NSEVVMVVAQYLRKLPDLERLLGRVK-------ARVQA 633
N++ ++ + Q L LPD+++ L +V A A
Sbjct: 341 QDNLHQIYDFERILTRIEVGSANAKDLVALKQSLGVLPDVKKSLQQVSCYNLHSLADTMA 400
Query: 634 SSCIVLPLIGKKVLKQ---QVKVFGSLVKGLRIAMD-LLMLMHKEGHIIPSLS-----RI 684
+ + LI ++ V+ G + G + +D L + H +I L R
Sbjct: 401 AHTDITNLIHSAIVDDPPFSVREGGMIKPGYNLDLDELREISHNSKKMIQELETAERERT 460
Query: 685 FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAE--TLSILIELFIEKASQWS 742
+ G + + + + ++ PD+ T +AE L E I+
Sbjct: 461 GIKSLKIGFNKVFGYYIEVTHTNTANVPDHYTRKQTLANAERYITPALKEFEIKILGSQE 520
Query: 743 EVI---HAISC--IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLK----- 792
+++ + I C D ++ + ++ + + AVR + P L
Sbjct: 521 KIVALEYQIFCDIRDTIKKYLRQIQETARKIAELDVYLSLSEAAVRHNYIRPSLNNNRNI 580
Query: 793 -IKGLWHPFALGE--NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
IK HP + E G VPND G + C T+++TGPNM GKST +R L V
Sbjct: 581 LIKEGRHP-VVEEILTGERFVPNDT--GLNHKTC--ETMVITGPNMAGKSTYMRQVALLV 635
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LAQ G F+P + +S D IFTR+GA D + G+STF+VE E A++L+ AT DSL++
Sbjct: 636 LLAQTGSFIPAKEASISPVDRIFTRVGANDDLAQGQSTFMVEMAEVANILKNATADSLIL 695
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDE+GRGTSTFDG +IA AV + E ++ + LF+THYH L + +P T+Q+ + A
Sbjct: 696 LDEVGRGTSTFDGMSIARAVIEYIQESVHAKTLFSTHYHELVELEKMYP--TVQNFSVAV 753
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
K +G+ +++FL+R+ G SYG+ VA +AG+P+K++E A
Sbjct: 754 K------ERGN-DIIFLHRIKGGGTDRSYGIHVARLAGLPKKLLERA 793
>gi|91201084|emb|CAJ74142.1| strongly similar to DNA mismatch repair protein MutS [Candidatus
Kuenenia stuttgartiensis]
Length = 870
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 228/856 (26%), Positives = 382/856 (44%), Gaps = 184/856 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK--CRQVGISESG 332
+QY +K + D LLFF++G FYEL+ DA+I K L +T G+ GI
Sbjct: 9 RQYNEIKKDHKDALLFFRMGDFYELFFEDAKIASKILGITLTSRSKGENAVPMAGIPHHA 68
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDA 390
+ KL+ G+KV EQL+ +AK ++ R ++ ++TP T + + G +
Sbjct: 69 SESYTRKLIKAGHKVAICEQLQDPGEAKG-----IVDRGVIRIITPGTVTEDALLDGKNN 123
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+LLA+ + ++G +++D + + + I ++ L L +++P E++
Sbjct: 124 NYLLALWKDKE-------IFGLSWIDLSTGKFEIEDIREER----LFDELARLNPSEIVL 172
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNG------------ 498
+ A R + +A + PA +F +++ + L++ G
Sbjct: 173 PDDITESNATFTQRIRTECNAMITPLPAW---EFSESTGYQALLEHFGTHSLEGFGCQDA 229
Query: 499 ------------YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDIL 546
Y + K + + +++ + + S L L +RN +
Sbjct: 230 GVALGAAGAILHYLKETQKTSLKHIAKIQKYETNNRVIMDRATQQS-LELTQTIRNKN-- 286
Query: 547 PYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNR-LDVVEYLMK-- 602
+G L LD T G RLL+ W+ PLK+ + I R L V E+ K
Sbjct: 287 ----------REGSLLGALDQTKTPMGARLLKDWVISPLKNHDEIKYRQLGVREFTEKPE 336
Query: 603 ---------------------------NSEVVMVVAQYLRKLPDL-ERLLGRVKARVQAS 634
N+ ++ + Q L KLP+L E+L + A +
Sbjct: 337 LRREIIAILHDIYDIERIAAKVSCGRANARDLISLQQSLSKLPELKEKLDFFITAIISDR 396
Query: 635 SCIVLPLIGKKVL---------KQQVKVFGSLVKGLRIAMDLLMLMHKEG-----HI--- 677
+ PL + L +K G + +G A+D L + K G H
Sbjct: 397 EKEIDPLDELRTLIGMAISLDSPHSLKEGGIIKEGYDAALDELRYISKNGKQWIAHFQAE 456
Query: 678 ------IPSL----SRIFK-------------PPIFDGSDGL---DKFLTQFEAAIDSDF 711
I SL +++F PP + L ++++T
Sbjct: 457 EIARTNINSLKVGYNKVFGYYIEITNTHRENIPPAYIRKQTLKNAERYIT---------- 506
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE---KASQWSE----VIHAISCIDVLRSFAVTAS 762
P+ + ++ L AE + +E LFI+ KA +++ + AI+ IDVL + A A
Sbjct: 507 PELKEYETKVLTAEERAKDLEYDLFIQLRDKAGTFTKQLQGISEAIAQIDVLSTLAKIAV 566
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGG--PVLKIKGLWHPFALGENGGLPVPNDILLGEDS 820
+ AM P+ + N G PVL ++ F VPNDI L
Sbjct: 567 ENRYAM------PEITDSLELNINDGCHPVLTMELDRERF---------VPNDINL---- 607
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
D +T+++TGPNM GKST +R T L VI+AQ+G F+P + + D IF R+GA+D
Sbjct: 608 DGVQDKTMVITGPNMAGKSTYIRQTALLVIMAQMGSFIPAKNATIGTVDRIFARVGASDE 667
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940
+ G+STF+VE ETA++L AT+ SL+ILDE+GRGTSTFDG +IA+A+ + + I R
Sbjct: 668 LSKGQSTFMVEMNETANILNNATERSLIILDEVGRGTSTFDGISIAWAITEYIYQNIGAR 727
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
LFATHYH LT+ L + K+ + + +E++FL ++ +G +SYG+
Sbjct: 728 TLFATHYHELTE---------LSLLFSGIKNFNVAVKEWGEEIIFLRKIVAGGTDKSYGI 778
Query: 1001 QVAVMAGVPQKVVEAA 1016
VA +AG+P+++++ A
Sbjct: 779 HVARLAGIPKQIIQRA 794
>gi|396468500|ref|XP_003838188.1| hypothetical protein LEMA_P117120.1 [Leptosphaeria maculans JN3]
gi|312214755|emb|CBX94709.1| hypothetical protein LEMA_P117120.1 [Leptosphaeria maculans JN3]
Length = 1288
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 230/445 (51%), Gaps = 53/445 (11%)
Query: 228 ADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDV 287
++ +++ WL + ++DA+R D P YD RTLYIPP A + S ++QYW +KS++ D
Sbjct: 355 SEPETRYSWL--AHMQDADRHPDDHPDYDPRTLYIPPGAWDQFSPFERQYWEIKSKFWDT 412
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347
++FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D + VA G+KV
Sbjct: 413 IVFFKKGKFYELYEKDATIGHQLFDLKLT--DRVNMRMVGVPEASLDLWAAQFVANGHKV 470
Query: 348 GRIEQLETS------------EQAK-ARHTNSVISRKLVNVVTPSTTVD-GTIGPD-AVH 392
R++Q+E++ E++K ++ + VI R+L V+T T VD G + D + +
Sbjct: 471 ARVDQMESALAKEMRERDDVGEKSKGSKKLDKVIRRELAAVLTSGTLVDAGMLQSDMSTY 530
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+A+KE + + +G AFVD A + + DD L+ Q+ P E++ E
Sbjct: 531 CMAVKEID---RDNLPAFGVAFVDTATAQFQLCEFTDDIDMTKFETLIAQMRPGELLLEK 587
Query: 453 RGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSS----SPW 507
L +A + L+ +A S L P + +F A + + N YF + W
Sbjct: 588 SCLSAKAMRILKNNTAPSTIWNTLKP---IKEFWPADTTIREIDANNYFESPTEHNIEAW 644
Query: 508 SKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-- 562
L + ++ SA G L+ +L L ++ D++ G+ Y R L +DGQ+L
Sbjct: 645 PPVLREAREQELVMSAFGALLQYLRTLKIERDLVTLGNFQWYDPIRKATSLVLDGQSLIN 704
Query: 563 ------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
L+ C+T GKRLLR W+CHPL D + IN RLD V+ L +S
Sbjct: 705 LEVFANTFDGSSEGTLFAMLNRCITPFGKRLLRQWVCHPLADAQKINARLDAVDALNADS 764
Query: 605 EVVMVVAQYLRKLPDLERLLGRVKA 629
V+ + L KLPDLERL+ RV A
Sbjct: 765 TVMDSFSSSLSKLPDLERLISRVHA 789
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 159/287 (55%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + I+ +D L S A +S ++ P P V ++ V+++
Sbjct: 966 FDEDYKTWLAAVKIIAQLDCLISLA----KASASLGEPSCRP------VFEEGDRTVIQL 1015
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L G +PNDI LG D+ + LLTG N GKST+LR TC+AVILAQ
Sbjct: 1016 EELRHPCMLNTVGDF-IPNDIKLGGDTANIS----LLTGANAAGKSTILRMTCIAVILAQ 1070
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC L D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 1071 VGCYLPCTSARLMPVDRIMSRLGANDNIFAAQSTFFVELSETQKILSEATPRSLVILDEL 1130
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + R+ C FATHY L KEF HP V + M +S
Sbjct: 1131 GRGTSSYDGVAVAQAVLHDISTRVGCVGFFATHYRSLAKEFEFHPEVQNKRMRIHVDDDS 1190
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ + FLY+L G S+G+ A M G+P KV++ A AA
Sbjct: 1191 KS-------ITFLYKLEEGVAEGSFGMHCAAMCGIPSKVIQTAEKAA 1230
>gi|407928522|gb|EKG21378.1| hypothetical protein MPH_01370 [Macrophomina phaseolina MS6]
Length = 1185
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 229/444 (51%), Gaps = 49/444 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I+DA+R P YD RTLYIPP A K SA +KQYW +KS++ D ++FFK
Sbjct: 259 RYTWL--AHIQDADRNPLGHPDYDPRTLYIPPGAWSKFSAFEKQYWEIKSKFWDTIVFFK 316
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA +GH+ D K+T R VG+ ES +D + VA+GYK+ +++Q
Sbjct: 317 KGKFYELYENDATVGHQLFDLKLT--DRVNMRMVGVPESSLDMWANQFVAKGYKIAKVDQ 374
Query: 353 LETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
+E++ A+ +I R+L +V+T T VDG + D + + +AIKE +
Sbjct: 375 MESALGKEMRERGGPAKKEEKIIRRELSSVLTGGTLVDGAMLQDDMSTYCVAIKEVD--- 431
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ V+G AFVD A + + DDA + Q P E++ E + +A + L
Sbjct: 432 RDNLPVFGIAFVDTATAQFQLCEFTDDADMTKFETFVAQTRPGELLLEKSCISAKALRIL 491
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQ-H 517
+ ++ + L P +F A + ++ + YF + W + L + + H
Sbjct: 492 KNNTSPTTIWNYLKPG---KEFWSADTAAREIEASDYFVSPDRDNIEVWPQVLRDAKENH 548
Query: 518 DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL------------ 562
++ SA G L +L L ++ D++ G+ Y R L +DGQ+L
Sbjct: 549 ELAMSAFGALFQYLRMLKIEKDLVTLGNFAWYDPIRKATSLVLDGQSLINLEIFANSFDG 608
Query: 563 --------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
L+ C+T GKR+L+ W+CHPL D IN RLD V+ L ++ V+ L
Sbjct: 609 GTDGTLFSMLNRCITPFGKRMLKQWVCHPLADARKINQRLDAVDALNADTTVMDRFTASL 668
Query: 615 RKLPDLERLLGRVKA-RVQASSCI 637
KLPDLERLL RV A R++A +
Sbjct: 669 SKLPDLERLLSRVHAGRIKAQDFV 692
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 154/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + IS +D L S A ++ RP + D+ +L+
Sbjct: 861 FDEGYSVWLAAVKIISQLDCLISLAKASASLGEPSCRPKFV----------DSERAILEF 910
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PNDI LG S + LLTG N GKST+LR TC+AVILAQ
Sbjct: 911 EELRHPCMLTNVTDF-IPNDIKLGGQSANID----LLTGANAAGKSTVLRMTCIAVILAQ 965
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G ++PC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 966 VGVYLPCSSATLTPVDRIMSRLGAQDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1025
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A +V + I C FATHYH L EF+ HP + + MA
Sbjct: 1026 GRGTSSYDGVAVAQSVLHHIATHIGCLGFFATHYHSLATEFSGHPEIAAKRMAI------ 1079
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLYRL G S+G+ A M G+ +++E A AA
Sbjct: 1080 -HVDDKERRVTFLYRLEDGVAEGSFGMHCAAMCGINPRIIERAEVAA 1125
>gi|345571284|gb|EGX54098.1| hypothetical protein AOL_s00004g131 [Arthrobotrys oligospora ATCC
24927]
Length = 1266
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 176/535 (32%), Positives = 265/535 (49%), Gaps = 61/535 (11%)
Query: 221 VKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNV 280
+K+ EEE ++ WL I+D + RP D +D RTL+IP A K S +KQYW +
Sbjct: 339 LKSKEEEV----RYPWL--VDIQDKDGNRPGDEEHDPRTLFIPKYAWNKFSPFEKQYWEI 392
Query: 281 KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKL 340
K D ++FFK GKFYELYE DA IGH+E D K+T R VG+ ES +D +
Sbjct: 393 KQDLFDTVVFFKKGKFYELYENDATIGHQEFDLKLT--DRVNMRMVGVPESSLDMWASQF 450
Query: 341 VARGYKVGRIEQLETS-------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AV 391
+A+GYK+ R++Q ET+ +K + + +I R+L V+T T VD T+ + A
Sbjct: 451 IAKGYKIARVDQKETALGKEMRENDSKKKDADKIIRRELECVLTGGTLVDETMLQNEMAT 510
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+ +AIKE +G YG FVD A + DD L+ Q+ PKE++ E
Sbjct: 511 YCVAIKE---SVQDGIPSYGICFVDTATGCFSLAGFEDDVDATKFETLVAQIRPKELVLE 567
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF--NGSSSPWSK 509
L +A + L K + G + T + +F D + + + YF +G+ S W +
Sbjct: 568 KGCLSTKALRIL-KTNTGPKTI-WTNLKSEREFWDDEHTIRELDASSYFEKDGAVS-WPE 624
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL---- 562
ALE + SA GGL+ +L +L +D D++ + Y R L MDGQTL
Sbjct: 625 ALEKSRDKPLVLSAFGGLLWYLRQLKIDADLVSLANFQWYDPIRKSTSLVMDGQTLQNLE 684
Query: 563 ----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
L+ C+T GKR R W+CHPL D + IN RLD VE +M +S +
Sbjct: 685 IFSNSFDGGAAGTLFNLLNQCITPFGKRTFRQWLCHPLSDAQKINARLDAVEAIMADSAL 744
Query: 607 VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIA 664
+ L +LPDLER++ +R+ A SC P +V++ +Q+ V S +K
Sbjct: 745 LDAFTTQLNRLPDLERMI----SRIHAGSC--KPADFLRVIEGFEQINVTMSEIKAYGGG 798
Query: 665 MDLLMLMHKEGHIIPSLSRIFKP--PIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
D ++ E +P L + +P F+ + D L E ++ DF D Q++
Sbjct: 799 GDGVIGELIES--MPDLDGLLEPWNTAFNRKEAKDGKLIP-EHGVEQDFDDSQDN 850
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 161/299 (53%), Gaps = 22/299 (7%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
++ E L F ++ + W + + IS +D L ++ + +S + P PQ
Sbjct: 932 IEKELLGRFCTRFDDQYTDWFKAVKVISQLDCL----ISLTKASQGLGEPSCRPQF---- 983
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
++ VL+ + L HP + G +PNDI LG + + LLTG N GKST+
Sbjct: 984 --VESERSVLEFEELRHPCMVNTTGDF-IPNDIRLGGKN----AKLTLLTGANAAGKSTV 1036
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
LR TC+ VI+AQ+GC+VP C +++ D I +RLGA D I +STF VE +ET +L +
Sbjct: 1037 LRMTCIGVIMAQIGCYVPAVSCRMTVVDRIMSRLGANDNIFAAQSTFFVELSETKKILSE 1096
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT SLVILDELGRGTS++DG AIA AV + I FATHY L EF HP +
Sbjct: 1097 ATPRSLVILDELGRGTSSYDGVAIAQAVLHHVATHIGAIGYFATHYGSLATEFQDHPEIQ 1156
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ M + N + FLY+L G +S+G+ A M G+ +K+++ A AA
Sbjct: 1157 PRRMKILVDDDQRN-------ITFLYKLEEGVAEKSFGMYCAAMCGIDKKIIDKAEEAA 1208
>gi|357612845|gb|EHJ68197.1| putative DNA mismatch repair protein muts [Danaus plexippus]
Length = 622
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 175/293 (59%), Gaps = 25/293 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F QW ++ ID+L +F A +G + P I + P
Sbjct: 311 MFEKFSSHQHQWEMATKCVATIDILLAFTEFARQQTGDICLPEI--------TYNKDQEP 362
Query: 790 VLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
+ I HP +P +PND LG D+ PR LLLTGPNMGGKSTL+R L
Sbjct: 363 YIDIVEGRHPCI-----SIPEFIPNDTRLGVDN----PRLLLLTGPNMGGKSTLMRQVGL 413
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+LA LGC VP C LS+ D IFTRLGA+D I++G+STFLVE ETA++++ AT+ SL
Sbjct: 414 LTVLAHLGCHVPASECRLSVCDRIFTRLGASDDILSGQSTFLVEMNETAAIVKHATKHSL 473
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGTST+DG IA++V L R +CR LF+THYH L A HP V L HMAC
Sbjct: 474 VLLDELGRGTSTYDGTCIAWSVCWWLAGR-SCRTLFSTHYHSLVHHLADHPAVLLGHMAC 532
Query: 968 AFKSNSENYSKGD----QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++ E+ GD + + FLY+L+ GACP+SYG A +AG+P+++ + A
Sbjct: 533 MVETD-ESAPDGDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPREITQRA 584
>gi|350419676|ref|XP_003492265.1| PREDICTED: probable DNA mismatch repair protein Msh6-like [Bombus
impatiens]
Length = 1129
Score = 233 bits (593), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/287 (44%), Positives = 172/287 (59%), Gaps = 26/287 (9%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP---- 789
F EK W+ ++ +S +DVL S A A SG M P + N G
Sbjct: 830 FSEKYDMWNMAVYKLSVLDVLISLAEYAL--SGDMCIPEV------------NDGTDERV 875
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ I+ WHP + + +PN+ LLG ++ ++LTGPNMGGKSTL+R L
Sbjct: 876 FIDIRDGWHPCIISDTF---IPNNTLLGTENSASF---MILTGPNMGGKSTLMRQVALLT 929
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+ Q+G +VP C L+L D IFTRLGA D I+ G+STFLVE +ETA++LQ AT SLV+
Sbjct: 930 IMTQIGSYVPASSCRLTLVDRIFTRLGANDDILAGQSTFLVELSETAAILQHATPYSLVL 989
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST+DG AIA +V L ++NCR LF+THYH L +++ + +TL HMAC
Sbjct: 990 LDELGRGTSTYDGTAIAASVVNALT-KLNCRTLFSTHYHSLVEDYKNTKEITLAHMACMV 1048
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ N E + + FLY+L+ GACP+SYG A +AGVP + A
Sbjct: 1049 E-NEEQDEVSQETVTFLYKLSEGACPKSYGFNAARLAGVPSVITNRA 1094
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 158/563 (28%), Positives = 246/563 (43%), Gaps = 72/563 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K+++L P+KIRD R+ P DP YD +TLY+PP+ L + + + +Q+W +KS++ D +LFFK
Sbjct: 184 KYDFLQPNKIRDIRRKPPSDPDYDPKTLYVPPDFLNQQTPAMRQWWELKSKHFDCVLFFK 243
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA I E++ G+ G E G L+ RGYKV R+EQ
Sbjct: 244 VGKFYELYHMDAVISVNEINLTYMR---GEFAHSGFPEIGYGRFSASLIERGYKVARVEQ 300
Query: 353 LET--------SEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEG 399
E S+ + + V+ R++ + + T V +A +LL++ E
Sbjct: 301 TENPDMMAQRCSKMTRPTKFDKVVKREICQISSKGTRVYTPQDVEASTANSNYLLSLIE- 359
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
C + + YG F+D ++G DD + + LL P V+YE L +
Sbjct: 360 KCPSGSNTSHYGVCFLDTTIGDFYLGQFEDDRCNSRILTLLAHYPPVHVVYERGNL---S 416
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQH 517
QK L+ + AA P + + F +S K + YF S + W L+ +
Sbjct: 417 QKTLKILNNTLAACIKEPLLRESQFWSSSTTLKNLHEGEYFKSSDTQFQWPAGLQPYLNQ 476
Query: 518 ------------DIGFSALGGLISHLSRLMLDD-VLRNGDILPYKV------------YR 552
++ ALGG + L +L+ +L G Y +
Sbjct: 477 NDTLGLTSADDKELAVHALGGCVYLLKEYLLEQQLLAQGRFKTYTPPDFSNEKSVASNFA 536
Query: 553 DCLRMDGQTL-------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+ + +D T+ LD C T+ GKRLLR WIC P I R ++
Sbjct: 537 NNMVLDAITINNLRIFGEGSLMKTLDRCCTAFGKRLLREWICRPSCRKNIIIERQQAIQE 596
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP------LIGKKVLKQQVKV 653
LM N+EV+ L LPDLERLL ++ A+ A+ P G+ K+++
Sbjct: 597 LMDNTEVMQNARSILAGLPDLERLLSKIHAQGNAAKMNNHPDGRAIMFEGQTYSKKKIAD 656
Query: 654 FGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQFEAAIDSDFP 712
F + + ++ L I S +P DG L + L F+ A D +
Sbjct: 657 FIVTLSAFEDVLKIVALFEDFKSTIVSRCTKIEP---DGEFPSLRESLDYFKTAFDHEEA 713
Query: 713 DYQNHDVTD--LDAETLSILIEL 733
V +D+E S+LIEL
Sbjct: 714 KKVGCIVPKRGVDSEYDSVLIEL 736
>gi|242786643|ref|XP_002480846.1| DNA mismatch repair protein Msh6, putative [Talaromyces stipitatus
ATCC 10500]
gi|218720993|gb|EED20412.1| DNA mismatch repair protein Msh6, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1183
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 146/445 (32%), Positives = 222/445 (49%), Gaps = 53/445 (11%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
E + ++ WL + I D +R P P YD R +YIPP A K S +KQYW +K ++ D
Sbjct: 251 ETEPEKRYPWL--ANIMDMDRNPPGHPDYDPRNIYIPPLAWTKFSPFEKQYWEIKQKFWD 308
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
++FFK GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+GYK
Sbjct: 309 TIVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGYK 366
Query: 347 VGRIEQLETS-----------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHL 393
+ R++Q E++ + AK + +I R+L V+T T V+G++ D + +
Sbjct: 367 IARVDQSESALGKEMRERDDKKSAKGSKEDKIIKRELSCVLTAGTLVEGSMLQDDMSTYC 426
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
+AIKE +G +G AFVD A + ++ DDA + Q P+E++ E
Sbjct: 427 VAIKEIIL---DGLPAFGIAFVDTATGQFYLSEFKDDADMTKFETFIAQTRPQELLLEKS 483
Query: 454 GLCKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS----PW 507
+ ++A + L K + G L L P +F +A + + + YF S W
Sbjct: 484 AVSQKAMRIL-KNNTGPTTLWNHLKPG---KEFWEADIAIRELDASDYFVSQESDNIDAW 539
Query: 508 SKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-- 562
+ L + + SA G L+ +L L LD D++ G+ Y R L +DGQTL
Sbjct: 540 PQVLREAREKENAMSAFGALVQYLRVLKLDRDLISIGNFTWYDPIRKATSLVLDGQTLIN 599
Query: 563 ------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
L+ C+T GKR+ + W+CHPL D++ IN R D V+ L +S
Sbjct: 600 LEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDIDKINARFDAVDALNADS 659
Query: 605 EVVMVVAQYLRKLPDLERLLGRVKA 629
+ + L K+PDLERL+ R+ A
Sbjct: 660 TIRDQFSSQLTKMPDLERLISRIHA 684
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 158/287 (55%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + I ++ +D L S A +S RP+ + DN V++
Sbjct: 862 FDENYETWLKSIRIVAQLDCLISLAKASSSLGEPSCRPVFV----------DNDRSVIEF 911
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +N +PND+ LG LLTG N GKST+LR TC+AVI+AQ
Sbjct: 912 EELRHPCML-QNVTDFIPNDVQLGGKR----ASINLLTGANAAGKSTILRMTCVAVIMAQ 966
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 967 IGCYIPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPKSLVILDEL 1026
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + + FATHYH L EF +HP + + M
Sbjct: 1027 GRGTSSYDGVAVAQAVLHHIATHVGALGFFATHYHSLAAEFENHPEICPKRMRI------ 1080
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ ++FLY+L G S+G+ A M G+P KV+E A HAA
Sbjct: 1081 -HVDDEERRVIFLYKLEDGVAEGSFGMHCASMCGIPNKVIENAEHAA 1126
>gi|340713019|ref|XP_003395049.1| PREDICTED: probable DNA mismatch repair protein Msh6-like [Bombus
terrestris]
Length = 1130
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/287 (43%), Positives = 172/287 (59%), Gaps = 26/287 (9%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP---- 789
F EK W+ ++ +S +DVL S A A SG M P + N G
Sbjct: 831 FSEKYDMWNMAVYKLSVLDVLISLAEYAL--SGDMCIPEV------------NDGTDKRV 876
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ I+ WHP + + +PN+ LLG ++ ++LTGPNMGGKSTL+R L
Sbjct: 877 FIDIRDGWHPCIISDTF---IPNNTLLGTENSASF---MILTGPNMGGKSTLMRQVALLT 930
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+ Q+G +VP C L+L D IFTRLGA D I+ G+STFLVE +ET+++LQ AT SLV+
Sbjct: 931 IMTQIGSYVPASSCCLTLVDRIFTRLGANDDILAGQSTFLVELSETSAILQHATPYSLVL 990
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST+DG AIA +V L ++NCR LF+THYH L +++ + +TL HMAC
Sbjct: 991 LDELGRGTSTYDGTAIAASVVNALT-KLNCRTLFSTHYHSLVEDYKNTKEITLAHMACMV 1049
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ N E + + FLY+L+ GACP+SYG A +AGVP + A
Sbjct: 1050 E-NEEQDEVSQETVTFLYKLSEGACPKSYGFNAARLAGVPSVITNRA 1095
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 157/563 (27%), Positives = 244/563 (43%), Gaps = 72/563 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K+++L P+KIRD R+ P DP YD +TLY+P + L + + + +Q+W +KS++ D +LFFK
Sbjct: 185 KYDFLQPNKIRDIRRKPPSDPDYDPKTLYVPQDFLNQQTPAMRQWWELKSKHFDCVLFFK 244
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA I E++ G+ G E G L+ RGYKV R+EQ
Sbjct: 245 VGKFYELYHMDAVISVNEINLTYMR---GEFAHSGFPEIGYGRFSASLIERGYKVARVEQ 301
Query: 353 LET--------SEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV-----HLLAIKEG 399
E S+ + + V+ R++ + + T V +A +LL++ E
Sbjct: 302 TENPDMMAQRCSKMTRPTKFDKVVKREICQISSKGTRVYTPQDVEASTANSNYLLSLVE- 360
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
C + YG F+D ++G DD + + LL P V+YE L +
Sbjct: 361 KCPSGSNKSHYGVCFLDTTIGDFYLGQFEDDRCNSRILTLLAHYPPVHVVYERGNL---S 417
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQH 517
QK L+ + AA P + + F +S K + YF S S W L+ +
Sbjct: 418 QKTLKILNNTLAACIKEPLLRESQFWSSSTTLKNLHEGEYFKNSDSQFQWPAGLQPYLNQ 477
Query: 518 ------------DIGFSALGGLISHLSRLMLDD-VLRNGDILPY---------------- 548
++ ALGG + L +L+ +L G Y
Sbjct: 478 NDTLGLTSADDKELAVHALGGCVYLLKEYLLEQQLLAQGRFKTYTPPDFSNEKSVASNFA 537
Query: 549 -KVYRDCLRMDGQTLY--------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+ D + ++ ++ LD C T+ GKRLLR WIC P I R ++
Sbjct: 538 NNMVLDAITINNLRIFGEGSLMKTLDRCCTAFGKRLLREWICRPSCRKNVIIERQQAIQE 597
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP------LIGKKVLKQQVKV 653
LM N+EV+ L LPDLERLL ++ A+ A+ P G+ K+++
Sbjct: 598 LMDNTEVMQNARSILAGLPDLERLLSKIHAQGNAAKMNNHPDGRAIMFEGQTYSKKKIAD 657
Query: 654 FGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQFEAAIDSDFP 712
F + + ++ L I S +P DG L + L F+ A D +
Sbjct: 658 FIVTLNAFENVLKIVALFEDFKSTIVSRCTKIEP---DGEFPSLRESLDYFKTAFDHEEA 714
Query: 713 DYQNHDVTD--LDAETLSILIEL 733
V +D+E S+LIEL
Sbjct: 715 KKVGCVVPKRGVDSEYDSVLIEL 737
>gi|321469768|gb|EFX80747.1| putative MSH6, mismatch repair ATPase [Daphnia pulex]
Length = 1310
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 177/310 (57%), Gaps = 26/310 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F W + I ++ +DV+ A+TA + + RP I+P N P
Sbjct: 986 IFEQFDNHHLLWEKAIKCLAVLDVV--LALTAFAADQKVCRPRIIPPGSNQR-------P 1036
Query: 790 VLKIKGLWHP-----FALGENGGLPVPNDILLG----EDSD---DCLPRTLLLTGPNMGG 837
L++ HP FA E +PND+ +G E SD D L+TGPNMGG
Sbjct: 1037 FLRLIQGRHPAHSQQFANSEF----IPNDVTIGSGVVEQSDSQVDADHSLTLVTGPNMGG 1092
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KSTL+R L VILAQ+G FVP E L+ D +FTRLGA D I+ GESTF VE +ETA+
Sbjct: 1093 KSTLMRQVGLCVILAQMGSFVPAEEFELTPVDRLFTRLGANDHILGGESTFFVELSETAA 1152
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957
+L+ AT SLV+LDELGRGT+TFDG AIAY+V L R CR LF+THYH L + SH
Sbjct: 1153 ILKHATLHSLVLLDELGRGTATFDGTAIAYSVVDHLARR-QCRTLFSTHYHSLVHDLTSH 1211
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
P V L HMAC +++ E + ++FLY+ GACP+SYG A +AG+ + ++
Sbjct: 1212 PQVRLGHMACMVENDEEVDDPSQENIIFLYQFVDGACPKSYGFHAARLAGLERSIISRGF 1271
Query: 1018 HAALAMKKSI 1027
A M+ +
Sbjct: 1272 QQAKRMESKM 1281
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 213/456 (46%), Gaps = 66/456 (14%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
+E+L P+ IRD RRRPDDP YD R++YIP + ++ + +Q+W +K+ DV+LFFKV
Sbjct: 336 YEFLKPANIRDGQRRRPDDPDYDPRSIYIPDSFKQSLTPAMRQWWEMKTNNFDVILFFKV 395
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY DA I KEL + C G E G +L+ +GYKV R+EQ
Sbjct: 396 GKFYELYHTDALIAVKELGIILMKGDHAHC---GFPERGFAKYSSQLIEKGYKVARVEQT 452
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPDAV----HLLAIKEGNC 401
ET E R + V+ R++ + + T I D H L
Sbjct: 453 ETPEMMTERCKRMSRPTKFDRVVEREVCQITSRGTRTYNAIEGDNWQVEHHFLMALWEKS 512
Query: 402 GPD--NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
G + G V +G AFVD + +G DD + L LL + +P E+I RG+ +
Sbjct: 513 GSEAAGGKVEFGVAFVDTSIGSFQLGQFGDDRYRSRLSTLLTRYNPVEIISAKRGVSNDT 572
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF--NGSSSPWSKALENVM-- 515
+ + +A E+ + A + D ++ + + + YF NG W + + ++
Sbjct: 573 TQVWNA-ACPNALHEMVSSNA--ECWDPAKTLRSLAESDYFKVNGDLD-WPEGIRPLLDD 628
Query: 516 ----------QHDIGFSALGGLISHLSRLMLDDVL--RNGDILPY---------KVYRDC 554
+ ++ ALG L +L LD L R + Y ++
Sbjct: 629 SSSLGLAAKEESELAIRALGALHWYLKECKLDQELLSRRSFQIYYPIDEESQENAIFGSH 688
Query: 555 LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
+ +DG TL L+ C T+ G+R+LR W+C PL + I++RL
Sbjct: 689 MVLDGMTLRNLDVLVNSSTGTTTGSLLERLNRCNTAFGQRMLRHWLCAPLCQQDAIDDRL 748
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
D VEYL+ N+ + V + L+ LPDLERL+ ++ ++
Sbjct: 749 DAVEYLLSNTAAIEEVGKILKSLPDLERLVNKIHSQ 784
>gi|451947327|ref|YP_007467922.1| DNA mismatch repair protein MutS [Desulfocapsa sulfexigens DSM 10523]
gi|451906675|gb|AGF78269.1| DNA mismatch repair protein MutS [Desulfocapsa sulfexigens DSM 10523]
Length = 889
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 249/878 (28%), Positives = 376/878 (42%), Gaps = 164/878 (18%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT----LSGVGKCR 324
K++ +QY +K QY D +LF+++G FYE++ DA + K L +T K
Sbjct: 6 KITPMLQQYLEIKEQYQDAILFYRMGDFYEMFFEDAAVASKILGITLTSRNSKDATNKVP 65
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
GI + KLV G +V EQ E +AK V+ VV S +D
Sbjct: 66 MCGIPYHAASGYLAKLVKAGRRVAICEQTENPSEAKGIVRREVVRVVSPGVVVDSGILDD 125
Query: 385 TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA-ALGALLMQV 443
D +++ AI C +YG +F+D + +G D + ++ L ++
Sbjct: 126 K---DNLYVAAI---CCKGKGNDTLYGISFLDLSTGAFLLGEFLDTTNNGESILDQLTRM 179
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAG--SAALELTPAMAVTD-------FLDASEVK--- 491
+P E++ L G A L P + VT F E+
Sbjct: 180 TPAELLVNENDL---------DLIGGLVDTATTLLPGLCVTQRPATQFHFSSCEELLIEH 230
Query: 492 -KLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRL---------MLDDVLR 541
K+ L G+ G ++ + + D ISH+ +L +DD R
Sbjct: 231 FKVNNLAGF--GCNTLKQGVIAAGVLLDYVIETQKSDISHIEKLTPIDLELILQIDDSSR 288
Query: 542 NGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L + + +G L LD T G R+L+ I PL++VE IN RL V +L
Sbjct: 289 RNLELTQTIIGS--QREGSLLSVLDHSCTPMGARMLKQEILFPLQNVERINARLGAVRFL 346
Query: 601 MKNSEVVMVVAQYLRKLPDLERL-----LGRVKAR---VQASSCIVLPLIGKKVLKQQVK 652
++ + + L + D+ERL LG R S LP I + +L+ +
Sbjct: 347 YGHTAIRNTFRELLTTIYDVERLNSRMVLGNGNGRDMLALKQSLAKLPAIRELLLQCDAE 406
Query: 653 VFGSLVKGLRIAMDLLMLMH-----------KEGHIIPS-----------LSRIFKPPIF 690
+ + L + DL L+ +EG +I + R + I
Sbjct: 407 HIRKIGEDLDVLADLHQLLENTIHEEAPITLREGRLIKEGYNEELDELMHIQRHGRQLIL 466
Query: 691 D------GSDGLDKFLTQFEAAI----------DSDFPDYQNHDVTDLDAET-------- 726
D + G+ K F ++ PD T ++AE
Sbjct: 467 DLESQERNATGIAKLKVGFNKVFGYFIEVSRLQSANVPDTYIRKQTLVNAERFITPELKE 526
Query: 727 ------------LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMS-----SGAMH 769
L + +LF+E SQ A +L+S A+ A + H
Sbjct: 527 FETKVLGAQDRRLELEYQLFVEIRSQL-----ASESSRLLKSGALLAKTDFLVCLAEVAH 581
Query: 770 RPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLL 829
L + K P V +NG + I+G G VPND+ L +++++ L +
Sbjct: 582 ----LYRYKCPEV--NNGDSIDIIEGRHPVIERSLPNGKFVPNDVHLDQETEEVL----I 631
Query: 830 LTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFL 889
+TGPNM GKST+LR T L V++AQ+G FVP + + + D IFTR+GA D + G+STF+
Sbjct: 632 ITGPNMAGKSTILRQTALIVLMAQMGSFVPAKEASIGVVDRIFTRVGAMDDLRRGQSTFM 691
Query: 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN--CRLLFATHY 947
VE ETA++L AT+ SLVILDE+GRGTSTFDG +IA+AV LV++ N + LFATHY
Sbjct: 692 VEMNETANILNNATEKSLVILDEIGRGTSTFDGLSIAWAVAEDLVQKNNKGVKTLFATHY 751
Query: 948 HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVA 1003
H LT + V NYS +E ++FL++L G SYG+QVA
Sbjct: 752 HELTDLARTEERV-------------RNYSIAVREWNDTIIFLHKLVKGGTNRSYGIQVA 798
Query: 1004 VMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
+AGVP++VV A GE K+ EQ EF+
Sbjct: 799 GLAGVPERVVRRA-----------GEILKNIEQ-GEFN 824
>gi|126654495|ref|XP_001388418.1| DNA repair protein [Cryptosporidium parvum Iowa II]
gi|126117123|gb|EAZ51223.1| DNA repair protein [Cryptosporidium parvum Iowa II]
Length = 1242
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/299 (44%), Positives = 182/299 (60%), Gaps = 23/299 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFA-VTASMSSGAMHRPLILPQSKNPAVRQD 785
L ++ + F + S + + +IS +DVL S A V+ S G +P+ L + +
Sbjct: 913 LHLMCKEFHSELSSFMGISDSISQLDVLSSLALVSLDTSDGPFCKPVFLSK------EET 966
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILL--GEDSDDCLPRTLLLTGPNMGGKSTLLR 843
NG P+L++K HP +PNDILL G C L+TGPNMGGKST+LR
Sbjct: 967 NGLPMLELKESRHPVVAKLKTNY-IPNDILLNGGSSPAPCS----LVTGPNMGGKSTILR 1021
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
TC++VI+AQ+GC+VP C L+ D IFTR+GA D I+ G+STFLVE ETA +L ++
Sbjct: 1022 QTCISVIMAQIGCYVPASECRLTAVDKIFTRIGAYDLIIEGKSTFLVELEETADILNHSS 1081
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+DSLVI+DELGRGTSTFDG AI+ A + I CR LF+TH H L EF++ V
Sbjct: 1082 EDSLVIIDELGRGTSTFDGTAISIATLEYISRVIKCRCLFSTHLHLLCDEFSNDTKVLPF 1141
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HM K N+E S + FLY+ SG CP+SYG+ VA +AG+PQ+VV+ + ALA
Sbjct: 1142 HM--DLKLNNETRS-----ITFLYKFISGICPKSYGMNVAQLAGIPQEVVDNS--VALA 1191
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 195/456 (42%), Gaps = 73/456 (16%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIP-------PEALKKMSASQKQYWNVKSQYMDVL 288
W+ IRD+ RP DP YD T+++P E + + +QYW +K ++ D L
Sbjct: 276 WVQLRNIRDSKGTRPLDPCYDPSTIWVPSSNSREAKEERMHFTPAMEQYWELKKEHFDKL 335
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
LFFK+GKFYEL+ +DA I K D + T S VG E+ + KLV GY+V
Sbjct: 336 LFFKMGKFYELFYIDAYICQKHCDLRWTSSDSKP--HVGFPETALHAYANKLVELGYRVV 393
Query: 349 RIEQLETSEQAKARHTNS--------VISRKLVNVVTPSTTVDGTIGPD-AVHLLAIKEG 399
+EQ+ET ++ + R+ ++ I R + V T T V + D A L+ +
Sbjct: 394 VVEQMETPKELEERNRSASRGVKKDKAIKRSVNEVFTNGTLVRPDMLSDMASILMTLYFS 453
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDA-SCAALGALLMQVSPKEVIYENRGLCKE 458
++ + G VD + + I + + ++ QV PKE+ Y +
Sbjct: 454 KKDSEDLTYEIGVVCVDITTGKAELINIEEKGDQFLQVRTIVCQVQPKEIAYLPGNI--- 510
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY---FNGSSSPWSKALENVM 515
LR S+ + P++ +T+F D V ++ +N F + P + +
Sbjct: 511 PLSILRYLSS------IVPSIQLTNFRDF--VDSVLAINDILETFEKLNVPVPDVVNRLC 562
Query: 516 QHDIGF-SALGGLISHLSRLML-DDVLRNGDILPYK------------VYRDCLRMDGQ- 560
AL G +L+ ++L D ++ G Y +D + Q
Sbjct: 563 NESKSLCCALSGTFRYLTTILLCDRLIMTGTFTEYDPSVSKHLIVNVGAIKDLELLQSQH 622
Query: 561 -----TL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+L +L +T G RLL+ WI +PL + E IN RLD V++LM NSE +
Sbjct: 623 GDEKNSLFGFLKHTITPGGTRLLKRWITYPLVNTERINERLDSVKWLMDNSEKLYEFRDE 682
Query: 614 LRKLP------------------DLERLLGRVKARV 631
LR + D ERL+ R+ + V
Sbjct: 683 LRAIERSASSASRGSRKKYSQHLDFERLINRITSGV 718
>gi|383847693|ref|XP_003699487.1| PREDICTED: probable DNA mismatch repair protein Msh6-like [Megachile
rotundata]
Length = 1125
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/276 (46%), Positives = 169/276 (61%), Gaps = 18/276 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F EK WS ++ +S +DVL S A A SG M P I V +G ++I
Sbjct: 826 FSEKYDMWSAAVYKLSILDVLISLAEYAL--SGDMCVPEI--------VSDTDGEIFIEI 875
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ HP L ++ +PND LLG ++LTGPNMGGKSTL+R L I+ Q
Sbjct: 876 RDGRHPCILSDSF---IPNDTLLGIGDSASF---MILTGPNMGGKSTLMRQVALLTIMTQ 929
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G +VP C L+L D IFTRLGA D I+ G+STFLVE +ETA++LQ AT SLV+LDEL
Sbjct: 930 IGSYVPASSCRLTLVDRIFTRLGANDDILAGQSTFLVELSETAAILQHATPYSLVLLDEL 989
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIA +V L ++ CR LF+THYH L +++ + +TL HMAC + N
Sbjct: 990 GRGTSTYDGTAIAASVVDALT-KLKCRTLFSTHYHSLVEDYKNKKDITLAHMACMVE-NE 1047
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVP 1009
E + + FLY+L+ GACP+SYG A +AGVP
Sbjct: 1048 EEGEVSQETVTFLYKLSEGACPKSYGFNAARLAGVP 1083
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 176/628 (28%), Positives = 271/628 (43%), Gaps = 78/628 (12%)
Query: 169 EDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEA 228
E VS ++P R V R + G + + + K +L Q + N E+
Sbjct: 120 ETVSEEESPEKKRKVSNNSRGRQ-----GARTKKNGKEDKKESKLSQQNQTQSSNNVVES 174
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
K+++L P+KIRD NR+ DP YD +T+Y+P + L + + + +Q+W +KS++ D +
Sbjct: 175 WPHLKYDFLQPNKIRDINRKPLSDPDYDPKTVYVPQDFLNQQTPAMRQWWELKSKHYDCV 234
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
LFFKVGKFYELY +DA +G EL+ G+ G E G L+ +GYKV
Sbjct: 235 LFFKVGKFYELYHMDAVVGVNELNLTYMR---GEFAHSGFPEIGYGRFSASLIEKGYKVA 291
Query: 349 RIEQLETSEQAKARHT--------NSVISRKLVNVVTPSTTVDGTIG-----PDAVHLLA 395
R+EQ E E R + + V+ R++ + T T + P++ +LL+
Sbjct: 292 RVEQTENPEMMAQRCSKMHRPTKFDKVVKREICQISTRGTRAYTALDVEASTPNSNYLLS 351
Query: 396 IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
+ E C + + YG F+D ++G DD + L LL P V+YE L
Sbjct: 352 LIE-KCQSGSNTSHYGVCFLDTTIGDFYLGQFEDDRCSSRLLTLLAHYPPVHVVYERGNL 410
Query: 456 CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS--PWSKALEN 513
+QK L+ AA P + + F +S K + YF S S W + L
Sbjct: 411 ---SQKTLKILDNTLAACMKEPLLRESQFWSSSTTLKNLHEGDYFKKSDSEFSWPEGLRP 467
Query: 514 VMQH------------DIGFSALGGLISHLSRLMLD---------------DVLRNGDIL 546
+ ++ ALGG I L L+ D L +G
Sbjct: 468 YLNEGDSLGLTPADDKELAVHALGGCIYLLKDYFLEQQLLAQGRFKSYTPPDFLEDGSST 527
Query: 547 PYKVYRDC---------LRM--DGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
K + LR+ DG + LD C T+ GKRLLR WIC P I R
Sbjct: 528 SSKFANNMILDAITINNLRIFGDGSLMKTLDRCCTAFGKRLLREWICRPSCRKNVILERQ 587
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP------LIGKKVLK 648
+ ++ LM +SE V L LPDLERLL ++ A+ A+ P G+ K
Sbjct: 588 EAIQELMDHSETVQSARSMLATLPDLERLLSKIHAQGNAARLNNHPDGRAIMFEGQTYSK 647
Query: 649 QQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQFEAAI 707
+++ F + + G A+ ++ L + + +P DG L + L F+ A
Sbjct: 648 RKILDFTTTLNGFEEALKIVALFEDFNTALITRCTKIEP---DGEFPSLRETLDYFKTAF 704
Query: 708 DSDFPDYQNHDVTD--LDAETLSILIEL 733
D + V +DAE S+L+EL
Sbjct: 705 DHEEAKKVGCIVPKKGVDAEYDSVLMEL 732
>gi|189347201|ref|YP_001943730.1| DNA mismatch repair protein MutS [Chlorobium limicola DSM 245]
gi|254766620|sp|B3EEE1.1|MUTS_CHLL2 RecName: Full=DNA mismatch repair protein MutS
gi|189341348|gb|ACD90751.1| DNA mismatch repair protein MutS [Chlorobium limicola DSM 245]
Length = 871
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 257/891 (28%), Positives = 390/891 (43%), Gaps = 152/891 (17%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
K+ S +QY +VK +Y D LL F+VG FYE + DA L+ +T + G
Sbjct: 9 KEHSPMMRQYLDVKDRYPDYLLLFRVGDFYETFFDDAREVAAALNIVLTRRS-NEIPMAG 67
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG 387
+ + KLV +GYKV +Q+E AK ++ R++ +++TP T +I
Sbjct: 68 FPHHASEGYIAKLVKKGYKVAVCDQVEDPAVAKG-----IVRREITDIITPGVTYSDSIL 122
Query: 388 PDA--VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWV-GTINDDASCAALGALLMQVS 444
D +L AI G V G AF+D + G + +DAS L +
Sbjct: 123 DDRHNNYLCAIVFLRVGRQT---VCGAAFIDVTTGEFRIAGLLPEDASV-----FLRSLH 174
Query: 445 PKEVIYENRGLCKEAQKALRK-FSAGSAALELTPAMAVTDFLDASEVK----KLVQLNGY 499
P E++ +E + LR AG+A L + + A E+ + L G
Sbjct: 175 PAELLVSAAD--RERSETLRHALPAGTAFTVLDEWLFREE--QAGEILARQFRTHSLKG- 229
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGL--ISHLSRLMLDDVL-------RNGDILPYKV 550
F +P + V+ H + + L I+ ++ L D + RN +I+
Sbjct: 230 FGIHDNPAGQVAAGVILHYLEETRQSSLQYITRITPLQSGDYMTLDLQTKRNLEII--SS 287
Query: 551 YRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
+D ++G L +D G RLLR W+ PL I RLD V+ L K
Sbjct: 288 MQDG-SINGSLLQVIDRTRNPMGARLLRQWLQRPLLRAADITMRLDAVDELKKMKPFRES 346
Query: 610 VAQYLRKLPDLERLLGRV--------KARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL 661
V L ++ DLER L R+ + R S+ V+PL+ + K S+ L
Sbjct: 347 VCCDLGQISDLERALARIATLRAIPREVRQLGSALAVIPLLKQSFQDTVSKRLCSIADAL 406
Query: 662 RIAMDLLMLM----------------------HKE------------------------- 674
DL+ ++ H+E
Sbjct: 407 MPLPDLVAMIESAVDPEAGASMRDGGYIRKGYHQELDDLRQTASTAKERLLEIQQEERER 466
Query: 675 ---GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEA------AIDSDFPDYQNHDVTDLDAE 725
G + +R+F I DK +E A P + ++ L+AE
Sbjct: 467 TAIGSLKVQFNRVFGYYIEISKANRDKVPPYYEKKQTLVNAERFTIPALKEYEEKILNAE 526
Query: 726 TLSILIELFIEKA-----SQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
S+++E + +A + +EVI I+ ID L ++AV A +PLI
Sbjct: 527 ERSLVLEQQLFQALCCRIAGHAEVIQENAALIAEIDCLAAYAVCAD--EYGYCKPLI--- 581
Query: 777 SKNPAVRQDNG-GPVL-KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPN 834
+++ +R NG PVL +I P+ + ND L D + L++TGPN
Sbjct: 582 AEHTGLRILNGRHPVLERILPADEPY---------IANDALF-----DDRQKMLMITGPN 627
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
M GKS+ LR T L V+LAQ GCFVP E + + D IFTR+GA+D + +GESTFLVE E
Sbjct: 628 MAGKSSYLRQTGLIVLLAQAGCFVPAEQAEIGVVDRIFTRVGASDNLASGESTFLVEMNE 687
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954
A +L AT SL++LDE+GRGTST+DG AIA+++ + +I R LFATHYH L +
Sbjct: 688 AADILNNATAKSLLLLDEIGRGTSTYDGLAIAWSMCEYIHRQIGARTLFATHYHELAELE 747
Query: 955 ASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
P V N+ GD+ ++FL ++ GA SYG++VA M+G+P V+
Sbjct: 748 GLLPGVV--------NYNASVLESGDR-VIFLRKIVRGASDNSYGIEVARMSGMPSAVIT 798
Query: 1015 AASHAALAMKK-------SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVD 1058
A M+K S G S +S Q S F + + L+T + V +D
Sbjct: 799 RAKAILAGMEKRDIATPSSSGLSLQSM-QISLFDEI-DTRLRTAIEVIDID 847
>gi|332024253|gb|EGI64457.1| Putative DNA mismatch repair protein Msh6 [Acromyrmex echinatior]
Length = 1122
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 176/292 (60%), Gaps = 18/292 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F EK W ++ ++ +DVL S A A +G M P I S +G +KI
Sbjct: 823 FSEKYDMWHAAVYKLATMDVLISLADYAR--NGDMCIPEIHDGS--------DGEIFIKI 872
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
K HP + +N +PND LL D ++LTGPNMGGKSTL+R L I+AQ
Sbjct: 873 KDGQHPCIVSDNF---IPNDTLLATDGTASF---MILTGPNMGGKSTLMRQMGLITIMAQ 926
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G +VP C ++L D IFTRLGA D I+ G+STFLVE +ETA++LQ+AT SLV+LDEL
Sbjct: 927 IGSYVPASSCCMTLVDRIFTRLGANDDILAGQSTFLVELSETATILQRATPYSLVLLDEL 986
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIA AV L ++ CR LF+THYH L +++ ++ VTL HMAC
Sbjct: 987 GRGTSTYDGTAIAAAVVDALT-KLKCRTLFSTHYHSLVEDYKTNEEVTLAHMAC-MVETE 1044
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
E + + FLY+L+ GACP+SYG A +AGVP + + A A M++
Sbjct: 1045 EEEEVSQETVTFLYKLSEGACPKSYGFNAARLAGVPSVITKRAHEIASRMEQ 1096
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 205/457 (44%), Gaps = 62/457 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K ++L P KIRD +RR P+DP YD +TLY+P E L + + +Q+W +KS++ D + FFK
Sbjct: 175 KLDFLRPEKIRDIHRRMPNDPDYDSKTLYVPTEFLINQTPAMRQWWELKSKHFDCVFFFK 234
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYELY +DA IG EL G+ G E G L+ RGYKV R+EQ
Sbjct: 235 IGKFYELYHMDAVIGVNELSLTYMR---GEFAHSGFPEIGYGRYSASLIERGYKVARVEQ 291
Query: 353 LETSEQAKARHT--------NSVISRKLVNVVTPSTTVDGTIG-----PDAVHLLAIKEG 399
E E AR + + V+ R++ V T T V + P++ +LL++ E
Sbjct: 292 TENPEMMAARCSKMTKPTKFDKVVKREICQVSTRGTRVYTPLDVEASTPNSNYLLSLVE- 350
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
C ++ +G F+D ++G DD + L LL P VIYE L +
Sbjct: 351 KCNFNSTISSFGVCFIDTTIGEFYLGQFVDDRCNSRLLTLLAHHPPIHVIYERSNL---S 407
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQ 516
QK L+ + A+ P F A+ V K + YF SS W + L+ +
Sbjct: 408 QKTLQLINNTLPAVLKEPLQREAQFWSATTVLKKLHEGSYFKKEKDSSFAWPEGLKPYLN 467
Query: 517 H------------DIGFSALGGLISHLSRLMLDDVL-------------------RNGDI 545
++ ALGG + L +L+ L R G
Sbjct: 468 EGDSLGLTPADNKELAVHALGGCVCLLKEFLLEQQLLAQGCFNTYIPPDFSTANSRTGLN 527
Query: 546 LPYKVYRDCLRMDGQTLY--------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
+ D + + L+ LD C T+ GKRLLR W+C P I R + V
Sbjct: 528 YANNMVIDAVTIKNLRLFGEGSLINILDHCCTAFGKRLLREWVCRPSCRKTVIIERQEAV 587
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
+ L+ +V+ L LPDLERLL ++ A+ A+
Sbjct: 588 QELLDRMDVMQSARIILSTLPDLERLLSKIHAQGNAA 624
>gi|401402358|ref|XP_003881229.1| DNA mismatch repair protein mutS, related [Neospora caninum
Liverpool]
gi|325115641|emb|CBZ51196.1| DNA mismatch repair protein mutS, related [Neospora caninum
Liverpool]
Length = 1487
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 181/311 (58%), Gaps = 32/311 (10%)
Query: 727 LSILIELFIEKASQ-WSEVIHAISCIDVLRSFAVTASMS---SGAMHRPLILPQSKNPAV 782
SIL F + + I A + +D L+S A + +G M RP IL
Sbjct: 1134 FSILFNAFYAHFTHTFGRAIQAAAELDCLQSLASVVAHHPGHNGQMCRPTILEA------ 1187
Query: 783 RQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDSDDCLP----RTLLLTGPNMG 836
+D+ P+L + HP A L +N VPND+ L +C P RTLLLTGPNMG
Sbjct: 1188 -RDDEPPILALTNCRHPVAETLMDNF---VPNDVYL-----NCGPHQEKRTLLLTGPNMG 1238
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKSTLLR L V++AQ+GCFVP + C L+ D IFTRLGA D I+ G STFLVE + +
Sbjct: 1239 GKSTLLRQAALCVVMAQIGCFVPADSCTLTPVDRIFTRLGAEDFILQGASTFLVELKDVS 1298
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
++ T+ SL ++DELGRGTSTFDG AIA A + +++ CR LFATHYH L E +
Sbjct: 1299 ELMTYGTRRSLAVVDELGRGTSTFDGTAIALASLEHITDQLQCRCLFATHYHLLCYEMQN 1358
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
HPHV HM A + E +S L FLY+LT G CP+S+G+ VA +AG+ +++ A
Sbjct: 1359 HPHVVNVHMKAAI--DEEQHS-----LAFLYKLTEGICPKSHGIHVARLAGIDSRILACA 1411
Query: 1017 SHAALAMKKSI 1027
+L +++ I
Sbjct: 1412 EEKSLRLQQEI 1422
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 206 DSSKRMRLLQDSVAGVKNCEEEADTTSKF----------EWLDPSKIRDANRRRPDD--P 253
D+ R RLL + A +NC F W DP+ +RD RR D
Sbjct: 384 DAELRRRLL--ASAAAQNCHFFRHYVDDFYTYHRQFSFPPWADPAHMRDLAGRRAVDCGE 441
Query: 254 LYDKRTLYIPP--------EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAE 305
YD +L+IP A ++ QYW +K + D L+ FK+GKFYEL DA
Sbjct: 442 DYDFSSLWIPAPDSQLARAHARPHLTPGMAQYWEIKKHHFDKLILFKIGKFYELVYGDAC 501
Query: 306 IGHKELDWKITLSGVGKCR-QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHT 364
H+ LD K G + G E + +LV GYKV +EQ+ET ++ + R++
Sbjct: 502 AAHRILDLKWMGGGGADAKPHCGFPEQNLHFQARQLVQAGYKVVVVEQMETPKELEKRNS 561
Query: 365 NS-------VISRKLVNVVTPSTTVDG-TIGPDAVHLLAIKEG 399
+ + R++ V + T +G +A +LL + G
Sbjct: 562 QAGTGAKDKAVRREVCEVYSAGTVRHADMLGNEARYLLVLYFG 604
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 110/264 (41%), Gaps = 51/264 (19%)
Query: 411 GFA--FVDCAALRVWVGTINDDASCA--ALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
GFA VD + RV + ++DD + A +L LL Q P EV+Y + K L+
Sbjct: 673 GFAACLVDVSTCRVALVRLSDDPAGAWPSLRLLLAQTLPVEVVYAPSNIPASVLKLLKYL 732
Query: 467 SAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSSSPWSKALENVMQHDIG----- 520
+ A +L+P A D L + SE + + +SP + +
Sbjct: 733 PS---APQLSPMPAFPDLLASHSEFDRYI--GARLEALASPANASSAPAESSSSLESLEL 787
Query: 521 -----------FSALGGLISHLSRLMLDDVLRNGDILPYKVYR----DCLRMDGQTL--- 562
A+GGL ++L LD + + I ++ +R L MD L
Sbjct: 788 CRRLCEKWSSLHCAVGGLCAYLRACRLDGSVLS--ICRFERFRPRDASVLVMDANALRQL 845
Query: 563 ----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
YLD VT+ G RLLR W+ PL++ + RLD V +L+ E
Sbjct: 846 EILQTQDGDAKKSLLGYLDRTVTAFGHRLLRRWVVAPLQNPRELKRRLDAVAWLLNRPES 905
Query: 607 VMVVAQYLRKLPDLERLLGRVKAR 630
V + + L+ PD+ERL ++ A+
Sbjct: 906 VASIRKALQACPDIERLSAKICAQ 929
>gi|19075844|ref|NP_588344.1| DNA mismatch repair protein [Schizosaccharomyces pombe 972h-]
gi|39931686|sp|O74502.1|MSH6_SCHPO RecName: Full=DNA mismatch repair protein msh6
gi|6644186|gb|AAF20943.1|AF207839_1 mismatch repair protein Msh6 [Schizosaccharomyces pombe]
gi|3581916|emb|CAA20855.1| MutS protein homolog [Schizosaccharomyces pombe]
Length = 1254
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 252/535 (47%), Gaps = 56/535 (10%)
Query: 144 YSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKR--------ILEDNLN 195
Y E D++ + A+ M+EDV G + P K+ L ++
Sbjct: 233 YVEPDHISEASSEASLPIDEVESMDEDVDGYSDHSVSVAAPIPKKESRKESSNSLYESYR 292
Query: 196 IGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEE---------ADTTSKFEWLDPSKIRDAN 246
+G + S S + + GV N EE+ + ++EWL +RDA+
Sbjct: 293 LGSQIASPSPSVSGSASPTKSNKNGVLNREEKRRQRMEAFKKENNERYEWL--LDVRDAD 350
Query: 247 RRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEI 306
+ R DP YD RTLYIPP A +KQ+W +K MD ++FF+ GKFYELYE DA I
Sbjct: 351 QNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAI 410
Query: 307 GHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS------EQAK 360
GH+ K+T + VGI E+ D + +A+GY++ R++QLET+ ++ +
Sbjct: 411 GHQVFSLKLT--DRVNMKMVGIPEASFDYWASQFIAKGYRIARVDQLETALGKEIKDRQR 468
Query: 361 ARHTNSVISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
+ V+ R L V+T T VD + D + + +AIKE + DN +G F+D +
Sbjct: 469 TQKEEKVVQRGLTQVLTSGTLVDEAMLTSDLSTYCMAIKE-SLQSDNEEPSFGICFIDTS 527
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPA 478
+ DD L LL QV PKE+I E + +++ +A++ + S+
Sbjct: 528 TGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAIKYCVSSSSIWNFI-- 585
Query: 479 MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM-QHDIGFSALGGLISHLSRLMLD 537
T+F D V++ + YF K L++ + + + SA G L +L +L LD
Sbjct: 586 KPYTEFWDNERVEREIIAGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFWYLRQLKLD 645
Query: 538 -DVLRNGDILPYKVYRD--CLRMDGQTL--------------------YLDSCVTSSGKR 574
D+ G+ Y + L M+GQTL L CVT GKR
Sbjct: 646 KDMCSMGNFDEYDASQQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKR 705
Query: 575 LLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
L +W+CHPL+ IN RLDVVE + N + + +L KLPDLERL+ RV A
Sbjct: 706 LFHTWLCHPLRSGTAINARLDVVELIADNPVIRDTIWGFLHKLPDLERLISRVHA 760
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 169/293 (57%), Gaps = 21/293 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F QW +I + ID S S ++ A+ P P+ + Q +G L
Sbjct: 940 FDSNYEQWLALIKYTASIDCFFSL----SQAAAALGEPYCRPE----IIEQKDGH--LYF 989
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP VPND++LG +S P ++LTGPNM GKSTLLR C+AVI+AQ
Sbjct: 990 EELRHPCINASAASTFVPNDVVLGGES----PNMIVLTGPNMAGKSTLLRQVCIAVIMAQ 1045
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
LGC+VP + ++ +I+TRLGA D IM+ STF+VE +ET +L + SLVILDEL
Sbjct: 1046 LGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDEL 1105
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG+AIAYAV LV I C F+THY L +F H V L MA A
Sbjct: 1106 GRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKI 1165
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ + FLY+L G CP+SYG+ VA MAG+P+KV++AA A ++++
Sbjct: 1166 -------RRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELEQA 1211
>gi|67611475|ref|XP_667158.1| DNA repair protein [Cryptosporidium hominis TU502]
gi|54658270|gb|EAL36933.1| DNA repair protein [Cryptosporidium hominis]
Length = 1242
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 182/299 (60%), Gaps = 23/299 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFA-VTASMSSGAMHRPLILPQSKNPAVRQD 785
L ++ + F + S + + +IS +DVL S A V+ S G +P+ L + +
Sbjct: 913 LHLMCKEFHSELSSFMGISDSISQLDVLSSLALVSLDTSDGPFCKPVFLSK------EET 966
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILL--GEDSDDCLPRTLLLTGPNMGGKSTLLR 843
NG P+L++K HP +PNDILL G C L+TGPNMGGKST+LR
Sbjct: 967 NGLPMLELKESRHPVVAKLKTNY-IPNDILLNGGSSPAPCS----LVTGPNMGGKSTILR 1021
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
TC++VI+AQ+GC+VP C L+ D IFTR+GA D I+ G+STFLVE ETA +L ++
Sbjct: 1022 QTCISVIMAQIGCYVPASECRLTAVDKIFTRIGAYDLIIEGKSTFLVELEETADILNHSS 1081
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+DSLVI+DELGRGTSTFDG AI+ A + I CR LF+TH H L EF++ V
Sbjct: 1082 EDSLVIIDELGRGTSTFDGTAISIATLEYISRVIKCRCLFSTHLHLLCDEFSNDTKVLPF 1141
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
HM K N+E S + FLY+ SG CP+SYG+ VA +AG+PQ+V++ + ALA
Sbjct: 1142 HM--DLKLNNETRS-----ITFLYKFISGICPKSYGMNVAQLAGIPQEVIDNS--VALA 1191
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 120/456 (26%), Positives = 196/456 (42%), Gaps = 73/456 (16%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIP-------PEALKKMSASQKQYWNVKSQYMDVL 288
W+ IRD+ RP DP YD T+++P E + + +QYW +K ++ D L
Sbjct: 276 WVQLRNIRDSKGTRPLDPCYDPSTIWVPSSNSREAKEERMHFTPAMEQYWELKKEHFDKL 335
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
LFFK+GKFYEL+ +DA I K D + T S VG E+ + KLV GY+V
Sbjct: 336 LFFKMGKFYELFYIDAYICQKHCDLRWTSSDSKP--HVGFPETALHAYANKLVELGYRVV 393
Query: 349 RIEQLETSEQAKARH--------TNSVISRKLVNVVTPSTTVDGTIGPD-AVHLLAIKEG 399
+EQ+ET ++ + R+ + I R + V T T V + D A L+ +
Sbjct: 394 VVEQMETPKELEERNRSASRGVKKDKAIKRSVNEVFTNGTLVRPDMLSDMASILMTLYFS 453
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDA-SCAALGALLMQVSPKEVIYENRGLCKE 458
++ + G VD + + I + + ++ QV PKE+ Y +
Sbjct: 454 KKDSEDLAYEIGVVCVDITTGKAELINIEEKGDQFLQVRTIVCQVQPKEIAYLPGNM--- 510
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY---FNGSSSPWSKALENVM 515
LR S+ + P++ +T+F D V ++ +N F + P + + ++
Sbjct: 511 PLSILRYLSS------IVPSIQLTNFRDF--VDSVLAINDILETFEKLNVPVPEVVNHLC 562
Query: 516 QHDIGF-SALGGLISHLSRLML-DDVLRNGDILPYK------------VYRDCLRMDGQ- 560
AL G +L+ ++L D ++ G Y +D + Q
Sbjct: 563 NESKSLCCALSGTFRYLTTILLCDRLIMTGTFTEYDPSVSRHLIVNVGAIKDLELLQSQH 622
Query: 561 -----TL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+L +L +T G RLL+ WI +PL + + IN RLD V++LM NSE +
Sbjct: 623 GDEKNSLFGFLKHTITPGGTRLLKRWITYPLVNTDRINERLDSVKWLMDNSEKLYEFRDE 682
Query: 614 LRKLP------------------DLERLLGRVKARV 631
LR + D ERL+ R+ + V
Sbjct: 683 LRAIERSASSASRGSRKKYSQHLDFERLINRITSGV 718
>gi|212543423|ref|XP_002151866.1| DNA mismatch repair protein Msh6, putative [Talaromyces marneffei
ATCC 18224]
gi|210066773|gb|EEA20866.1| DNA mismatch repair protein Msh6, putative [Talaromyces marneffei
ATCC 18224]
Length = 1197
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/449 (32%), Positives = 224/449 (49%), Gaps = 52/449 (11%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
K E + ++ WL + I D ++ P P YD R +YIPP A K S +KQYW +K
Sbjct: 261 KEKAHETEPEKRYPWL--ANIMDMDKNPPGHPDYDPRNIYIPPLAWSKFSPFEKQYWEIK 318
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E +D + V
Sbjct: 319 QKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFV 376
Query: 342 ARGYKVGRIEQLETS----------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD-- 389
A+GYK+ R++Q E++ ++AK + +I R+L V+T T V+G++ D
Sbjct: 377 AKGYKIARVDQSESALGKEMRERDDKKAKVGKEDKIIKRELACVLTAGTLVEGSMLQDDM 436
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ + +AIKE +G +G AFVD A + ++ DDA + Q P+E++
Sbjct: 437 STYCVAIKEIIL---DGLPAFGIAFVDTATGQFYLSEFKDDADMTKFETFVAQTRPQELL 493
Query: 450 YENRGLCKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS-- 505
E + ++A + L K + G L L P +F +A + + + YF S
Sbjct: 494 LEKSAVSQKAMRIL-KNNTGPTTLWNHLKPG---KEFWEADIAVRELDASDYFVSPDSDN 549
Query: 506 --PWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQ 560
W + L + + SA G L+ +L L LD D++ G+ Y R L +DGQ
Sbjct: 550 INAWPQVLREAREKENAMSAFGALVQYLRVLKLDRDLISIGNFTWYDPIRKATSLVLDGQ 609
Query: 561 TL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
TL L+ C+T GKR+ + W+CHPL D++ IN R D V+ L
Sbjct: 610 TLINLEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDIDKINARFDAVDAL 669
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+S + + L K+PDLERL+ R+ A
Sbjct: 670 NADSTIRDQFSSQLTKMPDLERLISRIHA 698
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 158/287 (55%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + I ++ +D L S A +S RP + D+ VL+
Sbjct: 876 FDEDYETWLKSIRIVAQLDCLISLAKASSSLGQPSCRPEFV----------DSERSVLEF 925
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +N +PND+ LG D LLTG N GKST+LR TC+AVI+AQ
Sbjct: 926 EELRHPCML-QNVTDFIPNDVQLGGDK----ASINLLTGANAAGKSTILRMTCVAVIMAQ 980
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 981 VGCYIPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPKSLVILDEL 1040
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + + FATHYH L EF +HP ++ + M
Sbjct: 1041 GRGTSSYDGVAVAQAVLHHIATHVGSLGFFATHYHSLAAEFENHPEISPKRMRI------ 1094
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KV+E A +AA
Sbjct: 1095 -HVDDEERRVTFLYKLEDGVAEGSFGMHCASMCGIPNKVIENAENAA 1140
>gi|149246718|ref|XP_001527784.1| hypothetical protein LELG_00304 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447738|gb|EDK42126.1| hypothetical protein LELG_00304 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1320
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 186/615 (30%), Positives = 279/615 (45%), Gaps = 82/615 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL I+DA +R PD P YD RTLYIP A K +A +KQYW +KSQ + ++FFK
Sbjct: 350 RYQWL--VNIKDAQKRTPDHPEYDPRTLYIPQLAWSKFTAFEKQYWEIKSQMWNTVVFFK 407
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I + + D KI G + GI E + ++ ++ GYKV +++Q
Sbjct: 408 KGKFYELYENDAIIANTKFDLKIAGGGRANMKLAGIPEMSFEHWAKEFISHGYKVAKVDQ 467
Query: 353 LETSEQAKAR-------HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
E+ + R +I R+L ++T T D + D + + L+IKE
Sbjct: 468 KESMLAKEIRGGAPGATKEEKIIKRELTGILTGGTLTDLDMISDDMSTYCLSIKEEQMED 527
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
G +G AFVD + + + + DD C L L+ Q+ PKE+I E LC A K L
Sbjct: 528 GKGK-KFGVAFVDTSTSELSLIELEDDTECTKLDTLVTQIKPKEIICEKGNLCSIATKIL 586
Query: 464 RKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS----SPWSKALENVMQ-HD 518
KF A S +T+F D + + + YF + S + L + HD
Sbjct: 587 -KFCAHSKHQIWNHMNPITEFWDVDITLEQLVKSRYFEAENLDDFSKYPDVLVKFKENHD 645
Query: 519 IGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYRDC---LRMDGQTL------------ 562
+ F+A GGL+S+L L LD ++ G+I YK+ + + +DG TL
Sbjct: 646 VAFNAFGGLLSYLKTLKLDQSIMSLGNIKEYKISLNANSHMILDGITLNNLEILHNNYDG 705
Query: 563 --------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVVAQY 613
L+ T GKR L+ W+ HPL E IN R D VEYLM + E+ ++
Sbjct: 706 GDQGTLFKLLNQATTPFGKRQLKKWVLHPLIKSEDINARFDSVEYLMGDGLELRSILQDT 765
Query: 614 LRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
L LPDLERL+ R+ + G K+ ++V S K ++ LL +
Sbjct: 766 LANLPDLERLIARIHS-------------GTLRFKEFLRVIESFEKIAKVLSQLLEFTNV 812
Query: 674 EGHIIPSLSRIFKPP----IFDGSDGLDKFLTQFE-----AAIDSDFPDYQNHDVTDLDA 724
E ++ R F I + D D+ + A ID +F D + DL+A
Sbjct: 813 ECGVLHKYLRNFPQAMSSHIGEWDDAFDRVEAKQNIIVPAAGIDEEF-DSSISIINDLEA 871
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
+ L E E SQ E+ + S +V + P+ + +KN +
Sbjct: 872 QLNQQLKEYKREYRSQ--EICYRDSGKEVY------------LIEMPVKV--AKNVPLSW 915
Query: 785 DNGGPVLKIKGLWHP 799
G K+K W P
Sbjct: 916 QTMGATSKVKRFWSP 930
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 162/292 (55%), Gaps = 22/292 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W +VI ++ ID + V + S M P P+ V +G ++
Sbjct: 961 FDKHYQTWMKVITCMANIDCI----VALTKVSETMGFPSCRPE----FVETQHG--MIDF 1010
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
K L HP +G +PNDI LG D + P LLTG N GKST++R T LAVIL+Q
Sbjct: 1011 KELRHPCFVGTKDF--IPNDIKLGGDDE---PSFGLLTGANAAGKSTIMRTTALAVILSQ 1065
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GCF+P E+ L+ D I TRLGA D IM G+STF VE +ET +L AT SLVILDEL
Sbjct: 1066 IGCFIPAELAKLAPVDRIMTRLGANDNIMQGKSTFFVELSETKKILSNATPRSLVILDEL 1125
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRG S+ DG+A+A +V L + FATH++ L F +HP V MA S
Sbjct: 1126 GRGGSSSDGFAVAESVLHHLATHLQSIGFFATHFNSLGLAFETHPQVKPMRMAIIVDQTS 1185
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+EL FLY+L SG P S+G+ VA+M G+ +++V+ A AA +K
Sbjct: 1186 -------RELTFLYKLESGTAPGSFGMNVALMCGISKEIVDNAEVAAREYEK 1230
>gi|324501049|gb|ADY40473.1| DNA mismatch repair protein Msh6 [Ascaris suum]
Length = 1219
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 173/296 (58%), Gaps = 24/296 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F +A++W+ V ++ DVL S A A+ S M RP + D+ P+L I
Sbjct: 902 FDTRAAKWAAVTERVAVFDVLLSLARYANSSGLCMCRPEFV---------YDSEKPLLDI 952
Query: 794 KGLWHP-----FALGENGGLP---VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
+HP + + GG +PND LG + P T+LLTGPNMGGKSTL+R
Sbjct: 953 VAGYHPCLAAKISAAKEGGANTNYIPNDTQLGGNH----PLTMLLTGPNMGGKSTLMRQV 1008
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ V+LAQ+G VP LS D IFTR+GA DRI G+STF VE +E +L+ A+
Sbjct: 1009 AVLVVLAQIGSLVPAAKMRLSPVDRIFTRIGANDRIAAGQSTFFVELSEANIILRDASVH 1068
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SLV++DELGRGTST DG AIAYAV R L E++ CR F+THYH L P++ HM
Sbjct: 1069 SLVVMDELGRGTSTHDGTAIAYAVLRALAEKVRCRAFFSTHYHSLCNAVRDVPNIKAAHM 1128
Query: 966 ACAFKSNSENYSKGDQELV-FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
AC ++ENYS E V FLY LTSG CP+SYG A ++G+ +V+ AA A+
Sbjct: 1129 ACIV--DNENYSDPTLEHVTFLYSLTSGVCPKSYGFFAAKVSGIKPEVIRAAFAAS 1182
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 155/528 (29%), Positives = 237/528 (44%), Gaps = 97/528 (18%)
Query: 188 RILEDNLNIGDKKNSSLLDSSKRMRLL-----QDSVAGVKNCEEEADTTSKFEWLDPSKI 242
R E+N++I +L S +M + VA + C+E F++L P KI
Sbjct: 175 RASEENMDISSTSTGTLDASMYKMNERGGTSKNEKVAVIDECDEGHFPHLDFDFLQPDKI 234
Query: 243 RDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYEL 302
RDAN R DP Y RTL++P LK+ + +Q+W KS Y D +L FKVGKFYE+Y +
Sbjct: 235 RDANGRLASDPDYCPRTLFVPEAFLKQQTPGHRQWWLAKSAYFDTMLLFKVGKFYEMYHM 294
Query: 303 DAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR 362
DA IG + L+ + C G E ++LV RGYKV R+EQ ET Q + R
Sbjct: 295 DAVIGVENLNLTYMRGKIAHC---GFPEVAYGRFADQLVNRGYKVARVEQTETPAQLEER 351
Query: 363 HT-----NSVISRKLVNVVTPST-------TVDG-----TIGPDAVHLLAIKEGNCGPDN 405
+ V+ R++ V + T T DG + P A HL A E P N
Sbjct: 352 NKLEKNREKVVRREICRVTSAGTRTYGVLDTCDGESALDAVEPTARHLFAFAE-KVMP-N 409
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
G YG F+D + R +V DDA+ +++ L P +++YE RG A ++L
Sbjct: 410 GLPTYGVCFIDTSVGRFYVAQFTDDANRSSMRTLFAHYQPSQILYE-RGRISPASQSLLN 468
Query: 466 FSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM--------- 515
SA + E L P +F DA K++ YF W L N++
Sbjct: 469 SSASAVIKEALIPK---KEFPDAEGTIKMLTNKLYFGEVVQSWPDTLRNLLADADALNPK 525
Query: 516 ---QHDIGFSALGGLISHLSRLMLD---DVLRNGD-----------------ILPYKVYR 552
+ + +ALG ++ +L R ++D +RN + ++ + Y
Sbjct: 526 CASEFNECMAALGAVLWYLKRSLIDVDMVTMRNFERYIPPSLSGNRMSQRDSVVSDETYW 585
Query: 553 DCLRM--DGQTLY-----------------------------LDSCVTSSGKRLLRSWIC 581
RM DG +LY ++ C+T GKR+LR W+C
Sbjct: 586 RGRRMVLDGISLYNLNIVPPLDGVKRSALRDSTSSKYSLYNTINKCITPFGKRMLRQWVC 645
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLPDLERLLGRV 627
P D + + +R D +++LM +S + + LRK+PDLERL+ ++
Sbjct: 646 APSCDADVLRSRQDAIQWLMNSSSKIFADKATELLRKMPDLERLVQKI 693
>gi|237838321|ref|XP_002368458.1| DNA mismatch repair protein, putative [Toxoplasma gondii ME49]
gi|211966122|gb|EEB01318.1| DNA mismatch repair protein, putative [Toxoplasma gondii ME49]
Length = 1607
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 164/269 (60%), Gaps = 28/269 (10%)
Query: 765 SGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDSDD 822
SG M RP I+ +++ P+L +K HP A L +N VPND+ L +
Sbjct: 1285 SGQMCRPTIVEA-------REDAPPILALKNCRHPVAETLMDNF---VPNDVYL-----N 1329
Query: 823 CLP----RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
C P RTLL+TGPNMGGKSTLLR L V++AQ+GCFVP + C LS D IFTRLGA
Sbjct: 1330 CGPHESKRTLLITGPNMGGKSTLLRQAALCVVMAQVGCFVPADSCTLSPVDRIFTRLGAE 1389
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D I+ G STFLVE + + ++ T+ SL ++DELGRGTSTFDG AIA A + + +
Sbjct: 1390 DSILQGASTFLVELKDISELMTYGTRHSLAVIDELGRGTSTFDGTAIALASLEHITDNLQ 1449
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
CR LFATHYH L E HPHV HM A N E Q L FLY+LT G CP+S+
Sbjct: 1450 CRCLFATHYHLLCYEMQGHPHVVNVHMKAAI--NEEQ-----QSLAFLYKLTKGVCPKSH 1502
Query: 999 GLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G+ VA +AG+ +++E A +L +++ +
Sbjct: 1503 GIHVARLAGIDPRILECAEEKSLRLQQEV 1531
Score = 86.3 bits (212), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 31/235 (13%)
Query: 195 NIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKF----------EWLDPSKIRD 244
+ G K ++ ++ R RLL A +NC F W DP+++RD
Sbjct: 383 STGRKATDAVDEAELRRRLLASPAA--QNCHYFRHYIEDFYMYHRQFSFPPWADPARMRD 440
Query: 245 ANRRRPDD--PLYDKRTLYIP--------PEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
+ RR D YD +L+IP A M+ QYW +K ++ D L+ FK+G
Sbjct: 441 ISGRRAIDCGEDYDFSSLWIPSPDSQLARAHARPHMTPGMAQYWEIKKEHFDKLILFKIG 500
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCR-QVGISESGIDDAVEKLVARGYKVGRIEQL 353
KFYEL DA H+ LD K G + G E + +LV GYKV +EQ+
Sbjct: 501 KFYELVYGDACAAHRILDLKWMGGGGADAKPHCGFPEQNLHFQARQLVQAGYKVVVVEQM 560
Query: 354 ETSEQAKARHTNS-------VISRKLVNVVTPSTTVDG-TIGPDAVHLLAIKEGN 400
ET ++ + R++ + + R++ V + T +G A +LL + G
Sbjct: 561 ETPKELEKRNSQAAAGAKDKAVRREVCEVYSAGTVRHADMLGQAARYLLVLYFGE 615
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
YLD VT+ G RLLR W+ PL++V + RLD V++L + E V + + L+ PD+ER
Sbjct: 908 YLDRTVTAFGHRLLRRWLVAPLRNVAELTRRLDAVDWLCNSPESVADIRKALQACPDIER 967
Query: 623 LLGRVKAR 630
L ++ A+
Sbjct: 968 LSAKICAQ 975
>gi|221484273|gb|EEE22569.1| DNA mismatch repair protein, putative [Toxoplasma gondii GT1]
Length = 1676
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 164/269 (60%), Gaps = 28/269 (10%)
Query: 765 SGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDSDD 822
SG M RP I+ +++ P+L +K HP A L +N VPND+ L +
Sbjct: 1354 SGQMCRPTIVEA-------REDAPPILALKNCRHPVAETLMDNF---VPNDVYL-----N 1398
Query: 823 CLP----RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
C P RTLL+TGPNMGGKSTLLR L V++AQ+GCFVP + C LS D IFTRLGA
Sbjct: 1399 CGPHESKRTLLITGPNMGGKSTLLRQAALCVVMAQVGCFVPADSCTLSPVDRIFTRLGAE 1458
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D I+ G STFLVE + + ++ T+ SL ++DELGRGTSTFDG AIA A + + +
Sbjct: 1459 DSILQGASTFLVELKDISELMTYGTRHSLAVIDELGRGTSTFDGTAIALASLEHITDNLQ 1518
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
CR LFATHYH L E HPHV HM A N E Q L FLY+LT G CP+S+
Sbjct: 1519 CRCLFATHYHLLCYEMQGHPHVVNVHMKAAI--NEEQ-----QSLAFLYKLTKGVCPKSH 1571
Query: 999 GLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G+ VA +AG+ +++E A +L +++ +
Sbjct: 1572 GIHVARLAGIDPRILECAEEKSLRLQQEV 1600
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 31/235 (13%)
Query: 195 NIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKF----------EWLDPSKIRD 244
+ G K ++ ++ R RLL A +NC F W DP+++RD
Sbjct: 455 STGRKATDAVDEAELRRRLLASPAA--QNCHYFRHYIEDFYMYHRQFSFPPWADPARMRD 512
Query: 245 ANRRRPDD--PLYDKRTLYIP--------PEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
+ RR D YD +L+IP A M+ QYW +K ++ D L+ FK+G
Sbjct: 513 ISGRRAIDCGEDYDFSSLWIPSPDSQLARAHARPHMTPGMAQYWEIKKEHFDKLILFKIG 572
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCR-QVGISESGIDDAVEKLVARGYKVGRIEQL 353
KFYEL DA H+ LD K G + G E + +LV GYKV +EQ+
Sbjct: 573 KFYELVYGDACAAHRILDLKWMGGGGADAKPHCGFPEQNLHFQARQLVQAGYKVVVVEQM 632
Query: 354 ETSEQAKARHTNS-------VISRKLVNVVTPSTTVDG-TIGPDAVHLLAIKEGN 400
ET ++ + R++ + + R++ V + T +G A +LL + G
Sbjct: 633 ETPKELEKRNSQAAAGAKDKAVRREVCEVYSAGTVRHADMLGQAARYLLVLYFGE 687
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
YLD VT+ G RLLR W+ PL++V + RLD V++L + E V + + L+ PD+ER
Sbjct: 977 YLDRTVTAFGHRLLRRWLVAPLRNVAELTRRLDAVDWLCNSPESVADIRKALQACPDIER 1036
Query: 623 LLGRVKAR 630
L ++ A+
Sbjct: 1037 LSAKICAQ 1044
>gi|330923791|ref|XP_003300375.1| hypothetical protein PTT_11611 [Pyrenophora teres f. teres 0-1]
gi|311325500|gb|EFQ91520.1| hypothetical protein PTT_11611 [Pyrenophora teres f. teres 0-1]
Length = 1214
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 152/460 (33%), Positives = 228/460 (49%), Gaps = 55/460 (11%)
Query: 215 QDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQ 274
+D +K ++ ++ WL + +DA+R D P YD RTLY+PP A K+SA +
Sbjct: 266 RDPNKKIKERPSASEPETRHPWL--AHQQDADRHPIDHPDYDPRTLYVPPHAFDKLSAFE 323
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
KQYW +KS++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E+ +D
Sbjct: 324 KQYWEIKSKWWDTVVFFKKGKFYELYEKDATIGHQLFDLKLT--DRVNMRMVGVPEASLD 381
Query: 335 DAVEKLVARGYKVGRIEQLE---------------TSEQAKARHTNSVISRKLVNVVTPS 379
+ VA GYKV R++Q+E T ++A N VI R+L V+T
Sbjct: 382 MWATQFVAAGYKVARVDQMESALGKEMRERDDKGKTPKKAAGGKENKVIRRELATVLTSG 441
Query: 380 TTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
T VD G + + + + +AIKE + + +G AFVD A + + DD
Sbjct: 442 TLVDTGMLQSEMSTYCMAIKEID---RDNLPAFGVAFVDTATAQFQLCEFTDDVDMTKFE 498
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQL 496
L+ Q+ P E++ E + + + L+ + + L P +F A + ++
Sbjct: 499 TLIAQMRPGELLLEKSCVSAKVLRILKNNTPPTTIWNWLKPN---KEFWPADIAIRELEA 555
Query: 497 NGYFNGSS----SPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVY 551
N YF + W L + ++ SA G L+ +L LM++ D++ G+ Y
Sbjct: 556 NNYFESPTEDNIEAWPAVLREAREQELVMSAFGALLQYLRTLMIERDLVTLGNFQWYDPI 615
Query: 552 RDC--LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEG 589
R L +DGQ+L L+ C+T GKRLLR W+CHPL D
Sbjct: 616 RKATSLVLDGQSLINLEIFANTFDGSTEGTLFAMLNRCITPFGKRLLRQWVCHPLADAAK 675
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
IN RLD V+ L +S ++ + L KLPDLERL+ RV A
Sbjct: 676 INARLDAVDALNADSTIMDNFSSSLSKLPDLERLISRVHA 715
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 161/296 (54%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E + + F E W + I+ +D L S A +S ++ P P V +
Sbjct: 883 EVATRFCQRFDEDYKVWLAAVKIIAQLDCLISLA----KASASLGEPSCRP------VFE 932
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
+ V++ + L HP L +PNDI LG D + LLTG N GKST+LR
Sbjct: 933 EGKRTVVEFEELRHPCMLNTVADF-IPNDIRLGGDGANIS----LLTGANAAGKSTILRM 987
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AVILAQ+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 988 TCIAVILAQVGCYLPCTSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETQKILSEATP 1047
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + R+ C FATHY L KEF HP V +
Sbjct: 1048 RSLVILDELGRGTSSYDGVAVAQAVLHDISTRVGCVGFFATHYRSLAKEFEFHPEVENKR 1107
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M +S++ + FLY+L G S+G+ A M G+P+KV+E A AA
Sbjct: 1108 MRIHVDDDSKS-------ITFLYKLEEGVAEGSFGMHCAAMCGIPKKVIENAEKAA 1156
>gi|221505747|gb|EEE31392.1| DNA mismatch repair protein, putative [Toxoplasma gondii VEG]
Length = 1682
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/269 (46%), Positives = 164/269 (60%), Gaps = 28/269 (10%)
Query: 765 SGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDSDD 822
SG M RP I+ +++ P+L +K HP A L +N VPND+ L +
Sbjct: 1360 SGQMCRPTIVEA-------REDAPPILALKNCRHPVAETLMDNF---VPNDVYL-----N 1404
Query: 823 CLP----RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
C P RTLL+TGPNMGGKSTLLR L V++AQ+GCFVP + C LS D IFTRLGA
Sbjct: 1405 CGPHESKRTLLITGPNMGGKSTLLRQAALCVVMAQVGCFVPADSCTLSPVDRIFTRLGAE 1464
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D I+ G STFLVE + + ++ T+ SL ++DELGRGTSTFDG AIA A + + +
Sbjct: 1465 DSILQGASTFLVELKDISELMTYGTRHSLAVIDELGRGTSTFDGTAIALASLEHITDNLQ 1524
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
CR LFATHYH L E HPHV HM A N E Q L FLY+LT G CP+S+
Sbjct: 1525 CRCLFATHYHLLCYEMQGHPHVVNVHMKAAI--NEEQ-----QSLAFLYKLTKGVCPKSH 1577
Query: 999 GLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G+ VA +AG+ +++E A +L +++ +
Sbjct: 1578 GIHVARLAGIDPRILECAEEKSLRLQQEV 1606
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 31/235 (13%)
Query: 195 NIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKF----------EWLDPSKIRD 244
+ G K ++ ++ R RLL A +NC F W DP+++RD
Sbjct: 461 STGRKATDAVDEAELRRRLLASPAA--QNCHYFRHYIEDFYMYHRQFSFPPWADPARMRD 518
Query: 245 ANRRRPDD--PLYDKRTLYIP--------PEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
+ RR D YD +L+IP A M+ QYW +K ++ D L+ FK+G
Sbjct: 519 ISGRRAIDCGEDYDFSSLWIPSPDSQLARAHARPHMTPGMAQYWEIKKEHFDKLILFKIG 578
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCR-QVGISESGIDDAVEKLVARGYKVGRIEQL 353
KFYEL DA H+ LD K G + G E + +LV GYKV +EQ+
Sbjct: 579 KFYELVYGDACAAHRILDLKWMGGGGADAKPHCGFPEQNLHFQARQLVQAGYKVVVVEQM 638
Query: 354 ETSEQAKARHTNS-------VISRKLVNVVTPSTTVDG-TIGPDAVHLLAIKEGN 400
ET ++ + R++ + + R++ V + T +G A +LL + G
Sbjct: 639 ETPKELEKRNSQAAAGAKDKAVRREVCEVYSAGTVRHADMLGQAARYLLVLYFGE 693
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
YLD VT+ G RLLR W+ PL++V + RLD V++L + E V + + L+ PD+ER
Sbjct: 983 YLDRTVTAFGHRLLRRWLVAPLRNVAELTRRLDAVDWLCNSPESVADIRKALQACPDIER 1042
Query: 623 LLGRVKAR 630
L ++ A+
Sbjct: 1043 LSAKICAQ 1050
>gi|49615726|gb|AAT67045.1| DNA mismatch repair protein [Petunia x hybrida]
Length = 1303
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 133/296 (44%), Positives = 177/296 (59%), Gaps = 20/296 (6%)
Query: 728 SILIEL---FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
SIL E+ F E +W E++ + +DVL S ++ + G RP I ++
Sbjct: 954 SILQEVDRRFCEHHDKWRELVRITAELDVLISLSIASDYYEGPTCRPNI------KSITS 1007
Query: 785 DNGGPVLKIKGLWHPFALGE--NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
+ PVL + L HP + + G V N++ LG ++ +LLTGPNMGGKSTLL
Sbjct: 1008 QDDVPVLLAENLGHPVLRSDSLDKGTFVSNNVSLGGPANASF---ILLTGPNMGGKSTLL 1064
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLAVILAQ+G VP LS D IF R+GA D IM G+STFL E ETAS+L A
Sbjct: 1065 RQVCLAVILAQVGADVPASSFDLSPVDRIFVRMGAKDHIMAGQSTFLTEILETASMLSLA 1124
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
+++SLV LDELGRGTST DG AIA +V V + CR +F+THYH L+ ++ V+L
Sbjct: 1125 SRNSLVALDELGRGTSTSDGQAIAESVLEHFVHNVQCRGMFSTHYHRLSIDYQKDSRVSL 1184
Query: 963 QHMACAFKSNSENYSKGD-QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
HM C S GD +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A+
Sbjct: 1185 CHMGCQVGKGS-----GDLEEVTFLYRLTPGACPKSYGVNVARLAGLPDDVLQKAA 1235
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 169/547 (30%), Positives = 256/547 (46%), Gaps = 82/547 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
KF +L ++ +D N R P+D YD RTLY+PP LK ++ Q+Q+W KS++MD +LFFK
Sbjct: 306 KFPFLGRNR-KDVNGRSPEDANYDPRTLYLPPNFLKGLTGGQRQWWEFKSKHMDKVLFFK 364
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYELYE+DA IG EL + C G E VEKL +GY+V +EQ
Sbjct: 365 MGKFYELYEMDAHIGANELHLQYMKGEQPHC---GFPEKNFSMNVEKLARKGYRVLVVEQ 421
Query: 353 LETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKEG--NCG 402
ET EQ + R + V+ R++ VVT T +G + PDA +L+A+ E
Sbjct: 422 TETPEQLEIRRREKGSKDKVVRREVCAVVTKGTLTEGEMLAANPDASYLMAVTESFQTAA 481
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
G YG VD ++ +G DD+ C+AL LL ++ P EVI + L E ++
Sbjct: 482 YQQGKHTYGVCMVDITTSKIILGQFEDDSDCSALCCLLSELRPVEVIKPAKLLSLETERV 541
Query: 463 LRKFSAGSAALELTPAMAVTDFLDA----SEVKKLVQ------LNGYFNGSSSPWSKALE 512
+ + + EL P +++F DA SEVK++ + L+ NG + + E
Sbjct: 542 MLRHTRNPLVNELVP---LSEFWDAERTISEVKRIYRNMSSSPLSSSPNGMGAHENNTSE 598
Query: 513 NVMQHDI-----------------GFSALGGLISHLSRLMLDDVL---RNGDILPYKVYR 552
Q D SALGG + +L + LD+ L ++LP +
Sbjct: 599 EDGQRDFLPDVLYELVNLGENGSYALSALGGTLYYLKQAFLDESLLKFAKFELLPLSGFC 658
Query: 553 DCLR-----MDGQ------------------TLY--LDSCVTSSGKRLLRSWICHPLKDV 587
D + +D TLY ++ C+T GKR+LRSW+ PL
Sbjct: 659 DSTQKPNMVLDAAALENLEIFENSRNGDSSGTLYAQVNHCMTPFGKRMLRSWLARPLYHP 718
Query: 588 EGINNRLDVVEYLMK-NSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPL-IGKK 645
E I R D V L N V+ + L +LPD+ERLL R+ +A+ + + +
Sbjct: 719 ESIRERQDAVSGLKGLNLPFVLEFRKELSRLPDMERLLARLFGSSEANGRNANKVTLYED 778
Query: 646 VLKQQVKVFGSLVKGL----RIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLT 701
K+Q++ F S ++G R L +++ + L + P G +D FL
Sbjct: 779 AAKKQLQEFISALRGCESMARACSSLGVILENTDSKL--LYHLLTPG--KGLPDVDSFLK 834
Query: 702 QFEAAID 708
F+ A D
Sbjct: 835 HFKDAFD 841
>gi|303280413|ref|XP_003059499.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459335|gb|EEH56631.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1434
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 131/308 (42%), Positives = 184/308 (59%), Gaps = 16/308 (5%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHR---PLILPQS 777
D + LS L+ F E+ +W AI+C+D L S A+ A + + P++LP
Sbjct: 1083 DALGKVLSGLVLKFCEEWPRWQRAAEAIACLDALCSLALAAEDLAACCAQTCTPVLLPPP 1142
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMG 836
++ P L L HP +GG VPND LG ++ P LLLTGPNMG
Sbjct: 1143 ST-----EDAKPSLSASRLTHPTVGAMSGGKAFVPNDTFLGGETP-ASPPFLLLTGPNMG 1196
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKSTLLR CLA ++A +G VP ++ AD I+ R+GA D I+ G+STF+VE +ETA
Sbjct: 1197 GKSTLLRQVCLAAVMAHVGADVPAASFTMTAADAIYVRMGAKDNIVGGQSTFMVELSETA 1256
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
++L++AT++SLV LDELGRGT+T DG AIA+AV R LV+ + R LF+THYH L + A
Sbjct: 1257 AMLRRATRNSLVALDELGRGTATTDGAAIAHAVVRHLVD-LGARSLFSTHYHRLADDRAG 1315
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
V L HM C + +G + + FLY L GACP+SYG+ VA +AG+P+ V++ A
Sbjct: 1316 DARVRLAHMGCEVSGD-----RGAERVTFLYALREGACPKSYGVNVARLAGLPESVLKLA 1370
Query: 1017 SHAALAMK 1024
+ + M+
Sbjct: 1371 AEKSAEME 1378
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 137/511 (26%), Positives = 214/511 (41%), Gaps = 107/511 (20%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK---------KMSASQKQYWNVKSQ 283
+F WL P RDA+ +RP++P YDK TL +P + K +S Q Q+W K+
Sbjct: 434 QFPWLQPENRRDASGKRPNEPGYDKSTLLLPKDFPKCKDANGKPFTVSPGQAQWWRFKAS 493
Query: 284 YMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVAR 343
+ D ++ FK+GKFYEL+E+DA +G +L + G+ G E E+L
Sbjct: 494 HFDSVIMFKMGKFYELFEMDAHVGAADLG---LMYMKGEQPHCGFPEKNYAANAERLARA 550
Query: 344 GYKVGRIEQLETSEQ-----AKARHTNSVISRKLVNVVTPSTTVDGTI---GPDAVHLLA 395
G++V +EQ ET Q A + ++V+ R+ V V+T T VD + PDA + +A
Sbjct: 551 GHRVVIVEQTETPAQLAERKAAGKTRDNVVMREKVAVLTRGTLVDPEMCEASPDAAYCVA 610
Query: 396 IKEGNC-----GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+G G ++ V G DCA R +G DDA + L L
Sbjct: 611 TFDGGAVATGEGAEDERWV-GVCAADCATGRFLLGAWLDDAHLSGLRTAL---------- 659
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSP 506
A A+R + + D L+A ++ YF G+S+P
Sbjct: 660 --------ATDAIRDAAPDAQTRSCGRDTCADDALEA------LRDGAYFPTLAGGASAP 705
Query: 507 WSKALENVMQHDI---------------GFSALGGLISHLSRLMLD-DVLRNGDI--LPY 548
+ A V D+ G A G + ++LS MLD D++ G + LP
Sbjct: 706 NAGATCGVKLPDVLATLATTAPARERAAGLGAFGVMHAYLSLAMLDRDLIPLGRVEALPG 765
Query: 549 K-------------VYRDCLRMDGQTLY--------------LDSCVTSSGKRLLRSWIC 581
V D + G + LD C + G+R LR W+C
Sbjct: 766 PGDAVAAAWSHGGYVAMDAAALSGLEVLEGADGGSRGSLLSSLDRCASGPGRRTLRRWVC 825
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLE----RLLGRVKARVQASSC 636
PL+ + R V L + + AQ +RK PDLE RL+G R + ++
Sbjct: 826 RPLRSHLAVEERQRAVRCLRGVASDALRSAQGRMRKAPDLERAVSRLVGAAGGRGRDAAN 885
Query: 637 IVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL 667
++L + K ++ F ++G+R A D+
Sbjct: 886 VIL---YEDAAKARLNGFLRALEGMRAARDI 913
>gi|213406337|ref|XP_002173940.1| DNA mismatch repair protein msh6 [Schizosaccharomyces japonicus
yFS275]
gi|212001987|gb|EEB07647.1| DNA mismatch repair protein msh6 [Schizosaccharomyces japonicus
yFS275]
Length = 1178
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 171/292 (58%), Gaps = 21/292 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F EK S W +I A++ +D L S A+ ++ RP IL Q ++ ++
Sbjct: 864 FDEKYSDWVRMIKAVASMDCLYSLALASAALGEPCCRPEILDQEQSEVTFEE-------- 915
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
L HP G VPND+ LG S + + +LTGPNM GKSTLLR TCLAVI+AQ
Sbjct: 916 --LRHPCVSTLTAGTFVPNDVQLGGMSANMI----VLTGPNMAGKSTLLRQTCLAVIMAQ 969
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
LGC+VP + L+ D+I TRLGA D IM+ STF+VE +ET +L ++T +LVILDEL
Sbjct: 970 LGCYVPAKHARLTPMDSIHTRLGANDDIMSSRSTFMVELSETKKILDESTPRTLVILDEL 1029
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIAYAV LV I C F+THY L +F H + + M+
Sbjct: 1030 GRGTSTYDGQAIAYAVLHHLVSNIGCLGFFSTHYQSLCTDFVHHKQLRMMQMSALV---- 1085
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+ + + FLY+L G C +SYG+ VA MA VP++VV+ A +L +++
Sbjct: 1086 ---DEAGRRVTFLYKLVDGVCSKSYGMNVASMASVPEEVVQVAETKSLELEE 1134
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 160/500 (32%), Positives = 243/500 (48%), Gaps = 58/500 (11%)
Query: 205 LDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPP 264
+ S + L +D V+ E ++EWL IRDA+ RP D YD RTLYIPP
Sbjct: 234 MSSGRNNVLSRDEKRKVRMAAFEKTNAGRYEWL--LDIRDADGNRPTDEDYDPRTLYIPP 291
Query: 265 EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR 324
A +KQYW +K MD ++FF+ GKFYELYE DA IGH+ K+T +
Sbjct: 292 SAWASFKPFEKQYWEIKKNLMDTVVFFQKGKFYELYENDAAIGHQVFALKLT--DRVNMK 349
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETS------EQAKARHTNSVISRKLVNVVTP 378
VGI E+ + + +A+GY++ R++QLET+ ++ ++ V+ R L V+T
Sbjct: 350 MVGIPEATFEYWAAQFIAKGYRIARVDQLETALGKEMKDRKNSKREEKVVQRGLTQVLTS 409
Query: 379 STTVDGTI--GPDAVHLLAIKEG-NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAA 435
T VD ++ + + +A+KE N + G FVD A V DD S
Sbjct: 410 GTLVDESMLTSDMSTYCMALKEAPNPQSRADGPLLGVCFVDTATGIVRACEFQDDISRTK 469
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRK-FSAGSAALELTPAMAVTDFLDASEVKKLV 494
L LL Q+ P+E++ E G+ ++ + ++ SA S + P +F D +
Sbjct: 470 LDTLLTQIRPRELLLEKSGISQKTMRTIKNGLSASSTIHNIKP---YNEFWDQERTVREF 526
Query: 495 QLNGYFNGSSSPWSKALENVM-QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR 552
+F+ AL NV+ ++ + SA+G L+ +L +L LD D+ G+ Y +
Sbjct: 527 DSCDFFDEHKE-MPDALRNVLDKNPLAASAVGALVWYLRQLKLDKDIFSMGNFHIYDASQ 585
Query: 553 D--CLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
L ++GQTL + CVT GKRL SW+ HPL+ E I
Sbjct: 586 QSTSLLLNGQTLKNLEIFNNSFDGGEEGTLFRLMCRCVTPFGKRLFHSWMNHPLRSPEQI 645
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQ 650
N RLDVVE L+ N + + L KLPDLER++ +RV AS C P+ ++L+
Sbjct: 646 NGRLDVVELLLDNPNLRDAILGILHKLPDLERMI----SRVHASRC--KPIDFLRILEGF 699
Query: 651 VKV----------FGSLVKG 660
++ FG+L+KG
Sbjct: 700 KRIDTGIHELKEDFGTLMKG 719
>gi|281211524|gb|EFA85686.1| DNA mismatch repair protein [Polysphondylium pallidum PN500]
Length = 850
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 200/697 (28%), Positives = 303/697 (43%), Gaps = 112/697 (16%)
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
G+ V G AF D + V D+ + LG+ L+Q+ KE + + +K + K
Sbjct: 182 GNRVIGAAFGDATLKSLGVLQFVDNEHLSNLGSFLLQMGVKECLIHIDDKNVDNKKVVEK 241
Query: 466 FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALG 525
P DF + + L +L G N + N ++ + +L
Sbjct: 242 LQDCDIPFTDVPN---ADFNVKNIEQDLTRLLGSVNN--------VLNELEQEYAMQSLS 290
Query: 526 GLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY---------LDSCVTSSGKRLL 576
LI HL L D + + + +RMD T + C T G R L
Sbjct: 291 CLIKHLELLCNDRYFGKFKLETFNL-DSYMRMDSATFRGLNIINEKESNQCNTPMGSRKL 349
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLERLLGR-VKARVQAS 634
WI PL D E I RLD VE + E+ + L+K+ DL+RL R V ++
Sbjct: 350 SQWIKQPLVDSEEIEKRLDFVEIFTNSLELRQSLRGNDLKKICDLDRLSKRFVGSKANLE 409
Query: 635 SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSD 694
C+ L I V+ LV L+ A D G +S F P+
Sbjct: 410 DCVNLYDI--------VQRMPVLVSSLQ-AYD--------GQCAELISSTFVEPLQSIVA 452
Query: 695 GLDKFLTQFEAAIDSD----------------------FPDYQNHD-----VTDLD---- 723
++L E ID D F N D TDL
Sbjct: 453 NFSQYLAMVEQTIDLDRANESHELSRKDEKLISNASKYFTHATNKDGVRFSTTDLRRLSD 512
Query: 724 ---------AETLSILIELFIEKASQWSEVI----HAISCIDVLRSFAVTASMSSGAMHR 770
AE+ L++ ++ AS + +I + I+ +DV + A +S++ R
Sbjct: 513 ECGKWSKQYAESQQALVDQALQVASSFVPIIDDLSYLIALLDVYVNLAHISSVAPTPFVR 572
Query: 771 PLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLL 830
P I P V I G HP ++G +PNDI L + + ++
Sbjct: 573 PKIFPMGTGDTV----------IIGGRHPCVEVQDGVNFIPNDIELNRER----SQFHVI 618
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNMGGKST +R + ++LAQ+GCFVP E +S+ D I TR+GA D + G STF+
Sbjct: 619 TGPNMGGKSTFIRQVGVIILLAQIGCFVPAEEASISVVDCILTRIGAGDSQLRGVSTFMA 678
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E ET+ +L+ AT++SL+I+DELGRGTST+DG+ +A+ + + +I LFATH+H L
Sbjct: 679 EMLETSYILKTATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGAYCLFATHFHEL 738
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
T P V H++ D L LY++ +G+C +S+G+ VA+MAG P+
Sbjct: 739 TVLAELIPVVNNLHVSANIT---------DNRLTLLYKIENGSCDQSFGIHVAIMAGFPE 789
Query: 1011 KVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEW 1047
+V+E A A + ESF+S+ + EE+
Sbjct: 790 EVIEIARSKASEL-----ESFESNSLKKNIHQFLEEF 821
>gi|448082468|ref|XP_004195147.1| Piso0_005692 [Millerozyma farinosa CBS 7064]
gi|359376569|emb|CCE87151.1| Piso0_005692 [Millerozyma farinosa CBS 7064]
Length = 1245
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 146/435 (33%), Positives = 223/435 (51%), Gaps = 41/435 (9%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL I+DA +R DDP YD RTLYIP A +A +KQYW +K + D ++FFK
Sbjct: 309 RYQWL--VNIKDAQKRPADDPEYDSRTLYIPQSAWSSFTAFEKQYWEIKCKMWDTVVFFK 366
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DAEI + E D K+ G + GI E + ++ + GYKV +++Q
Sbjct: 367 KGKFYELYENDAEIANTEFDLKLAGGGRANMKLAGIPEMSFEYWAKEFIDHGYKVAKVDQ 426
Query: 353 LETSEQAKAR----HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
ET + R +I R+L ++T T D + D +V+ L+I+E DNG
Sbjct: 427 KETLLAKEMRGGSTKEEKIIKRELTGILTGGTLTDLNMINDDMSVYCLSIREEIL--DNG 484
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
++G AFVD A + + DD C L L+ QV PKE+I E LC A K L KF
Sbjct: 485 CKLFGIAFVDTATSEMNLVEFEDDQECTKLDTLITQVKPKEIICEKNNLCSIATKIL-KF 543
Query: 467 SAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSSSPWSKALENVMQH----DIGF 521
S+ S +++F D + ++KL++ + Y +S ++Q+ F
Sbjct: 544 SSHSTNQIWNNLNPISEFWDYDTTLEKLIKGSYYEAEDLDDFSHYPSTLVQYKDEKKCAF 603
Query: 522 SALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL--------------- 562
A GGL+ +L L LD +L G+I Y + ++ L +DG +L
Sbjct: 604 HAFGGLLFYLRSLKLDSSILSLGNIKEYIISKNTATHLILDGVSLSNLEVLNNSFDGTDK 663
Query: 563 -----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVVAQYLRK 616
++ +T GKR+L++W+ HPL D++ IN R D +++ M E ++ + L
Sbjct: 664 GTLFKLINRAITPFGKRMLKTWLLHPLMDIKKINERYDSIDFFMNGGIEFKEMLEKTLNS 723
Query: 617 LPDLERLLGRVKARV 631
LPDLERLL R+ +
Sbjct: 724 LPDLERLLARIHGKT 738
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 158/302 (52%), Gaps = 24/302 (7%)
Query: 725 ETLSI-LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
ETL + E F + S + + ++ ID L + + +S + P S PA
Sbjct: 905 ETLKFRMYEKFEKDYSTYMRTLQILAKIDCL----IALTKTSETIGFP-----SCRPAFI 955
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
+ N G V + K L HP G +PND++LG P LLTG N GKST++R
Sbjct: 956 ESNKGQV-EFKELRHPCFTGTKDF--IPNDVVLG----GSKPNMGLLTGANAAGKSTIMR 1008
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T LA+IL+Q+GC+VP L+ D I TRLGA D IM G+STF VE +ET +L + T
Sbjct: 1009 TTALAIILSQIGCYVPASFAALTPVDRIMTRLGANDNIMQGKSTFFVELSETKRILSRTT 1068
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
S VILDELGRG S+ DG++IA AV + I FATH+ L F +HP +
Sbjct: 1069 PKSFVILDELGRGGSSSDGFSIAEAVLHHIATHIQSLGFFATHFGSLGLSFRNHPQIRPM 1128
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
M N+ N + FLY+L G P S+G+ VA M G+ +++V A AA
Sbjct: 1129 RMGILVDENTRN-------ITFLYKLEEGTAPGSFGMNVAAMCGIAEEIVSNAERAAEEY 1181
Query: 1024 KK 1025
+K
Sbjct: 1182 EK 1183
>gi|209876662|ref|XP_002139773.1| MutS domain-containing III family protein [Cryptosporidium muris
RN66]
gi|209555379|gb|EEA05424.1| MutS domain-containing III family protein [Cryptosporidium muris
RN66]
Length = 1210
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 173/290 (59%), Gaps = 20/290 (6%)
Query: 732 ELFIEKASQWSEVIHAISCIDVLRSFA-VTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
++F S +S + ++S +DVL + + V+ + G RP L +D+G
Sbjct: 884 KMFHSHFSSFSAISDSLSQLDVLIALSIVSMDTTDGPFCRPTFL---------EDSGKST 934
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L++ HP N G V NDI ++ D +L+TGPNMGGKST+LR TC+AVI
Sbjct: 935 LELTKCRHPVVARLNSGF-VDNDIFF--NTRDVHASCILVTGPNMGGKSTVLRQTCIAVI 991
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+A +GCFVP C L+L D IFTR+GA D I+ +STFLVE ETA++L+ AT++SLV++
Sbjct: 992 MAHIGCFVPASKCSLTLVDRIFTRIGAYDSILEAKSTFLVELEETATILKHATRNSLVVV 1051
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTSTFDG AI A + I CR LF+TH H L +EF+ P + HM
Sbjct: 1052 DELGRGTSTFDGTAICVATLEYISHHIQCRCLFSTHLHLLCQEFSEDPSIIAFHMDLKL- 1110
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
S+ + + FLY+ G CP+SYG+ VA +AG+P +V++ A + A
Sbjct: 1111 ------SQDTKTITFLYKFVRGICPKSYGMNVAQLAGIPAEVIDKAVNLA 1154
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 196/451 (43%), Gaps = 75/451 (16%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIP-------PEALKKMSASQKQYWNVKSQYMDVL 288
WL +KI+D+N R P DP Y+ T+++P E + + +QYW +K + D L
Sbjct: 239 WLQLTKIKDSNGRYPTDPNYNPSTVWVPDSNSKLAKEEKHHFTPAMQQYWELKKDHFDKL 298
Query: 289 LFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
+FFK+GKFYEL+ +DA + + +L W +SG GK VG E+ + KLV GY+
Sbjct: 299 VFFKIGKFYELFYIDACLSQRLCDLRW---MSGDGK-PHVGFPEAALHAYANKLVNYGYR 354
Query: 347 VGRIEQLETSEQAKARHTNS-------VISRKLVNVVTPSTTVDGTIGPDAVHLLAI--- 396
V +EQ+ET ++ + R+ + + R + T T V + D +L
Sbjct: 355 VVVVEQMETPKELEERNKTTSGIKKDKAVKRGVNEFFTNGTLVRPNMLNDMARILMTIYV 414
Query: 397 --KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDAS-CAALGALLMQVSPKEVIYENR 453
K + PDN G VD + + + + + L+ QV P+EV+Y +
Sbjct: 415 FSKVNDEAPDNIINEIGIVCVDITTGKSELSILKEIGDHFPMVKTLVTQVQPREVVYLSG 474
Query: 454 GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASE----VKKLVQLNGYFNGSSSPWSK 509
L + L+ TP + +T F D E K +++ +F +
Sbjct: 475 NLPLPILRYLKN---------TTPTIQLTSFRDFMEPILASKDIIE---HFQRVNVEIPT 522
Query: 510 ALENVMQHDIGF-SALGGLISHLSRLML-DDVLRNGDILPYKV-YRDCLRMDGQTL---- 562
+ + +AL G +++L ++L D + G+ Y + L +D L
Sbjct: 523 IINELCTKSTALCTALSGTLNYLKSILLCDRFILTGNFQQYNPDEKQYLLLDAGALKDLE 582
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+L T G RLLR W+ HPL + + IN RLD VE+ + + V+
Sbjct: 583 LLQTQQGDEKNSLFGFLKHTSTPGGTRLLRKWLSHPLTNADRINERLDCVEWFINHPNVL 642
Query: 608 MVVAQYLRKLP-----------DLERLLGRV 627
+ L+ + DLER++ R+
Sbjct: 643 FNFCRELKAISPNGNGSPGSNLDLERIINRI 673
>gi|406909772|gb|EKD49954.1| hypothetical protein ACD_63C00001G0002 [uncultured bacterium]
Length = 830
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 238/854 (27%), Positives = 390/854 (45%), Gaps = 126/854 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ D +LFF++G FYE++ DA++ K LD +T K V G+
Sbjct: 2 RQYSVIKAQHKDSILFFRMGDFYEMFFEDAKVASKILDIALTSRNKEKGIDVPLCGVPYH 61
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
++ + KLV G KV EQ+E +AK ++ R +V VVTP T + ++ + V
Sbjct: 62 AAENYLAKLVKAGKKVAVCEQIEDPAKAKG-----IVKRDVVRVVTPGTALSDSLLDERV 116
Query: 392 HLLAIKEGNCGPDNGSVVY--GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ + D S Y G A D + D ++L L +++P+E +
Sbjct: 117 NNFIV-SVIVAEDRNSEQYKVGIAVSDVSTGEFRGTEFFDAKKLSSLKNELTKLNPRECL 175
Query: 450 -----YENRGLC--------------------KEAQK----------ALRKFSAGSAALE 474
Y+N G+ KE K +L F L
Sbjct: 176 IPKDLYKNFGILEALKCVDGMNIYPYEDWNFEKETAKDFLRSHFDVESLEGFGIKDEELA 235
Query: 475 LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL--GGLISHLS 532
+ A A+ +L ++ KL ++ FN S L++ ++ + G +
Sbjct: 236 IGSAGALLSYLRETQKTKLNHISK-FNLYSIDERMILDDATLRNLELVSTLRSGEKKNTL 294
Query: 533 RLMLDDVLRN--GDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGI 590
+LDD L + G +L V + ++ LDS +LR + LK+V +
Sbjct: 295 LWVLDDTLTSMGGRLLRNSVLSPLINVEKIKNRLDSVEEFCKDNILREEVGEKLKEVSDL 354
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR--VQASSCI-----VLPLIG 643
+ + N+ ++ + L+ +P L+ +L V ++ + + + V+ LI
Sbjct: 355 ERLAGKIGCMSANARDLLALKDSLKIIPALKSILKNVDSKRLIFLKNNLNEIKEVVDLIE 414
Query: 644 KKVLKQQVKVF--GSLVK-GLRIAMDLL------------MLMHKEGH--IIPSL----S 682
K V + G+L+K G +D + L KE IPSL +
Sbjct: 415 KSVDESSPVTLKDGNLIKKGYDAKLDKIKDAAISGKEWIKTLQRKESARAKIPSLKVKFN 474
Query: 683 RIFKPPIFDGSDGLDKFLTQF---EAAIDSD---FPDYQNHDVTDLDAETLSILIE--LF 734
R+F I L + + + + ++++ P+ + + L+AE I +E +F
Sbjct: 475 RVFGYYIEVSKTNLSQVPSDYIRKQTLVNAERFITPELKEKEDLILNAEERMIELEFRIF 534
Query: 735 IEKASQWSEVIHAISCI-------DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
+E + SE I I + D+L +FA R I P V D+G
Sbjct: 535 VEIRDKVSEYIKDIQKVAKILAELDLLSNFA-----------RIAINNNYTKPKVDTDDG 583
Query: 788 GPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
L+IK HP ++ G VPND+ L D+ +C + ++LTGPNM GKST +R
Sbjct: 584 ---LEIKEGRHPVVERIKSAGSFVPNDVSL--DNKNC--QLIVLTGPNMSGKSTYIRQNA 636
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L ++AQ+G FVP + + D IFTR+GA+D + G+STF+VE ETA++L AT S
Sbjct: 637 LITLMAQIGSFVPAAFVKIGVVDRIFTRVGASDALTRGQSTFMVEMQETANILNNATSRS 696
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHPHVTLQH 964
L+ILDE+GRGTSTFDG +IA+AV +V E++ + LFATHYH L + P V ++
Sbjct: 697 LIILDEIGRGTSTFDGVSIAWAVAEYIVSKEKLGAKTLFATHYHELLELEKILPRV--KN 754
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
A K + + +++FLY++ G SYG+ V +AG+P++VV A + +
Sbjct: 755 FNVAVKESKD-------KVIFLYKILRGGTNRSYGIYVGKLAGLPKEVVRRAEDVLIKLD 807
Query: 1025 KSIGESFKSSEQRS 1038
K GE +E RS
Sbjct: 808 K--GERLFGNEVRS 819
>gi|328779790|ref|XP_392346.4| PREDICTED: probable DNA mismatch repair protein Msh6 [Apis mellifera]
Length = 1129
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/285 (44%), Positives = 174/285 (61%), Gaps = 19/285 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F EK WS ++ +S +DVL ++T SG M P I + N + I
Sbjct: 830 FSEKYDMWSMAVYKLSVLDVL--ISLTEYAFSGDMCIPEINDGT--------NEKIFIDI 879
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ HP + + +PND LL ++ ++LTGPNMGGKSTL+R L I+AQ
Sbjct: 880 RDGRHPCIISDTF---IPNDTLLATEN---FASFMILTGPNMGGKSTLMRQVALLTIMAQ 933
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G +VP C L+L D IFTRLGA D I+ G+STFLVE +ET+++LQ AT SLV+LDEL
Sbjct: 934 IGSYVPASSCRLTLVDRIFTRLGANDDILAGQSTFLVELSETSAILQHATPYSLVLLDEL 993
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIA AV L ++NCR LF+THYH L +++ ++ +TL HMAC + N
Sbjct: 994 GRGTSTYDGTAIAAAVVNALT-KLNCRTLFSTHYHSLVEDYKNNKKITLAHMACMVE-NE 1051
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
E + + FLY+L+ GACP+SYG A + GVP V+ + +H
Sbjct: 1052 EQDKVSQETVTFLYKLSEGACPKSYGFNAARLGGVPA-VITSRAH 1095
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 208/453 (45%), Gaps = 64/453 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K+++L P+KIRD N++ P+D YD +TLY+P + L + + + +Q+W +KS++ D +LFFK
Sbjct: 184 KYDFLQPNKIRDINKKSPNDSDYDPKTLYVPLDFLNQQTPAMRQWWELKSKHFDCVLFFK 243
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYELY +DA IG EL G+ G E G L+ RGYKV R+EQ
Sbjct: 244 LGKFYELYHMDAVIGVNELHLTYMR---GEFAHSGFPEIGYGRFSASLIERGYKVARVEQ 300
Query: 353 LETSEQAKARHTNSV---------------ISRKLVNVVTPSTTVDGTIGPDAVHLLAIK 397
E + R +N + I+ K V TP T P++ +LL++
Sbjct: 301 TENPDMMAQRVSNMIRPTKFDKVVKREICQITSKGTRVYTPQDIEPST--PNSNYLLSVI 358
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
E C + YG F+D ++G DD + L LL P V+YE L
Sbjct: 359 E-KCPSGSNISHYGVCFLDTTIGDFYLGQFEDDRCNSRLLTLLAHYPPVHVVYERGNL-- 415
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVM 515
+QK L+ F+ AA + + F +S K + YF S S W L++ +
Sbjct: 416 -SQKTLQIFNNNLAACIKESLLRESQFWSSSTTLKNLHEGDYFKKSDSEFQWPTGLQSYL 474
Query: 516 QH------------DIGFSALGGLISHLSRLMLDD-VLRNGDILPY-------KVYR--- 552
++ ALGG I L +L+ +L G Y K +
Sbjct: 475 NKSDSLGLTPAEDKELAVHALGGCIYLLKEYLLEQQLLAQGRFKTYIPPDFSNKTFEASK 534
Query: 553 -------DCLRMDGQTLY--------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
D + ++ ++ LD C T+ GKRLLR WIC P + I R + +
Sbjct: 535 FANNMVLDAITINNLRIFGEGSLIKTLDRCCTAFGKRLLREWICRPSCRKDVIIERQEAI 594
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
+ LM +SE V L LPDLERLL ++ A+
Sbjct: 595 QELMNHSEAVQTTRSILAGLPDLERLLSKIHAQ 627
>gi|378726093|gb|EHY52552.1| DNA mismatch repair protein MSH6 [Exophiala dermatitidis
NIH/UT8656]
Length = 1250
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 229/466 (49%), Gaps = 56/466 (12%)
Query: 220 GVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWN 279
G K + + WL+ IRD +R P P YD RTLYIPP A K S +KQYW
Sbjct: 278 GKKQKAHMTEPEQRHAWLE--DIRDIDRNPPGHPDYDPRTLYIPPMAWTKFSPFEKQYWE 335
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
+K + D ++FFK GKFYELYE DA IGH+ D K+T R VG+ ES ++ +
Sbjct: 336 IKQKLWDTIVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLEMWANQ 393
Query: 340 LVARGYKVGRIEQLETS-----------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
VA+G+KV R++Q ET+ K + VI R+L V+T T VDGT+
Sbjct: 394 FVAKGFKVARVDQQETALGKNMRERDEKSNMKKGKEDKVIRRELACVLTAGTLVDGTMLQ 453
Query: 389 D--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
D + + +AIKE + +G AFVD A + + DD+ + Q P+
Sbjct: 454 DDMSTYCVAIKESEI---DNMPAFGVAFVDTATGQFHISQFVDDSDLTRFETFVAQTRPQ 510
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E++ E + + + L+ + + L P +F + K ++ + YF
Sbjct: 511 EILLEKGEVSMKTLRILKNNTGPTTIWNYLKPG---KEFWEGHITAKEIEASDYF---PM 564
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL 562
W + L+ + D+ SALG LI +L L ++ +++ G+ Y R L +DGQTL
Sbjct: 565 DWPEVLQQAREKDLLMSALGALICYLRTLNIERELVTLGNFTWYDPIRKATSLVLDGQTL 624
Query: 563 --------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +
Sbjct: 625 INLEVFANSYDGGIEGTLFQLLNRCITPFGKRMFKQWVCHPLMDTKKINARLDAVDSLNR 684
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK 648
+++V + KLPDLERL+ +RV A SC V + KVL+
Sbjct: 685 DTKVRDRFTSQMTKLPDLERLI----SRVHAGSCKVQDFV--KVLE 724
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/314 (39%), Positives = 163/314 (51%), Gaps = 21/314 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA-VRQDNGGPVLK 792
F EK W I I+ +D L S A +S RP + ++ A R L+
Sbjct: 894 FDEKYEIWLAAIRIIAQLDCLISLAKASSSLGYPSCRPEFIDDDQDAASTRLGPSRSTLE 953
Query: 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
+ L HP L + +PND++LG + LLTG N GKST+LR TC+AVI+A
Sbjct: 954 LVELRHPCLLAKVDDF-IPNDVVLGGTGANLS----LLTGANAAGKSTVLRMTCIAVIMA 1008
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+GC++PC L+ D I +RLGA D I +STF VE ET +L +AT SLVILDE
Sbjct: 1009 QIGCYLPCLSARLTPFDRIMSRLGAQDHIFAAQSTFFVELAETKKILSEATPRSLVILDE 1068
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTS+ DG A+A AV L + C FATHYH L+ EF HP + Q M
Sbjct: 1069 LGRGTSSHDGVAVAQAVLHHLASHVGCLGFFATHYHSLSAEFKGHPEIEPQRMKILVDDE 1128
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA--------LAMK 1024
+ + FLY+L G S+G+ A M G+P +VV+ A AA +A K
Sbjct: 1129 Q-------RRVTFLYKLERGVAEGSFGMHCASMCGIPARVVDRAQEAAREWEYTSLMARK 1181
Query: 1025 KSIGESFKSSEQRS 1038
G + KS+ Q S
Sbjct: 1182 LKAGANNKSNGQDS 1195
>gi|403178118|ref|XP_003336563.2| hypothetical protein PGTG_17874 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173346|gb|EFP92144.2| hypothetical protein PGTG_17874 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1135
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 185/311 (59%), Gaps = 32/311 (10%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMH-RPLILPQSKNPAVRQDNGGPVLK 792
F E W +V+ +++ +D + S A AS+ G RP I+ D+ ++K
Sbjct: 800 FDENYLIWLQVVKSVAQLDCVLSLA-KASIGLGETTCRPKIV----------DSDEAMVK 848
Query: 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
L HP +G + + ND+ +G D+C R +LLTGPNM GKSTLLR TC+A ILA
Sbjct: 849 FVTLRHPCTVGRDDSDFISNDVSVG--GDEC--RMILLTGPNMAGKSTLLRMTCVATILA 904
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+GC+VP E V+S D I TR+GA+D I STF VE + +L++AT SLVILDE
Sbjct: 905 QIGCYVPAESAVISPVDRICTRMGASDHIFAHASTFKVEMDDARKILKEATSKSLVILDE 964
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTSTFDG+AIA+AV +L NC FATHY LT++F +H ++ ++M
Sbjct: 965 LGRGTSTFDGHAIAFAVLHRLATHSNCLGFFATHYSALTEDFRAHANIATKYMLT----- 1019
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESF- 1031
N + +E+VFLY+L+SG P SYG VA MAG+P K+V+ A SI E F
Sbjct: 1020 --NVDEVTREVVFLYKLSSGVSPRSYGPHVAKMAGIPSKIVQRAI--------SISEKFE 1069
Query: 1032 KSSEQRSEFSS 1042
K ++ R+E S+
Sbjct: 1070 KETKDRTELSA 1080
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 225/474 (47%), Gaps = 73/474 (15%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
W I+DA+ P YD RTL+I + M+ + Q+W +K K
Sbjct: 209 WAFLRDIKDADGNPMGSPEYDPRTLFISKKDWASMTPFEVQFWEIKR-----------SK 257
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLET 355
F ELYE DA IGH+E D KIT K VG+ E+ +D + K +A+GYKVG+++Q ET
Sbjct: 258 FAELYEGDALIGHQEFDLKITKRV--KMSMVGVPETSVDFWIAKFLAKGYKVGKVDQCET 315
Query: 356 SEQAKARHTNS-------------------VISRKLVNVVTPSTTVDGTIGPD--AVHLL 394
+ A+ R+ S ++ R+L +VVT T VDG I D A LL
Sbjct: 316 ALGAEMRNKGSLPTSKYAKPPPQQKGSGKEIVRRELRSVVTSGTIVDGNILTDDSATCLL 375
Query: 395 AIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRG 454
AIKE ++ V+G +D A + D A+ L ++ + PKE+++E G
Sbjct: 376 AIKEST---NSDLPVFGVIIMDAATAEFNLTHFEDSANRTHLETIMSRFKPKEILHEKSG 432
Query: 455 LCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV 514
L + LR ++ A+ +FL+ E + +L F S + ++
Sbjct: 433 LSPATLRVLRNTASSDCTWT---ALKSDEFLEPDEC--VCRLTELFQESGGQIPQVFQSF 487
Query: 515 MQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLR---MDGQTL-------- 562
ALGGL+ +L +L LD D+L ++ +R C R +DG+T+
Sbjct: 488 NNKLETMQALGGLLWYLKQLNLDKDLLTCKNVKEMDAFR-CSRTMHLDGKTISDLELLQS 546
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
L+ CVTS GKRL R W+C PL+D + I RLD V++LM N +
Sbjct: 547 DGSEESRLLKLLNRCVTSFGKRLFRHWLCSPLQDGDAIRARLDAVDFLMNNPSFEEKFST 606
Query: 613 YLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMD 666
L LPDLERL+ +RV A +C V + KVLK K++ S ++ LR +D
Sbjct: 607 -LSGLPDLERLI----SRVHAGACTVPNFL--KVLKAFEKIY-STIQELRQLID 652
>gi|384495958|gb|EIE86449.1| hypothetical protein RO3G_11160 [Rhizopus delemar RA 99-880]
Length = 964
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 245/470 (52%), Gaps = 45/470 (9%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
+N + + S+++WL I+DA++ D P YD RTL+IP A + +KQYW VK
Sbjct: 139 RNQKFKEKNESRYQWL--QDIKDADKNPVDSPDYDPRTLFIPSSAWSLFTPFEKQYWEVK 196
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
++ D ++FFK GKFYELYE DA+IGH++ D K+T R VG+ E D + +
Sbjct: 197 CKHWDTVVFFKKGKFYELYEKDADIGHRDFDLKLT--DRVNMRMVGVPEMSFDYWAAQFI 254
Query: 342 ARGYKVGRIEQLETS------EQAKARHTNSVISRKLVNVVTPSTTVD-GTIGPD-AVHL 393
A+GYKV +++Q+ET+ E++ A + +I R++ +V+T T VD G + D +
Sbjct: 255 AKGYKVVKVDQMETAIGKSMREKSGASAKDKIIRREVTSVLTAGTLVDAGLLTNDLSTFC 314
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
++IKE C + +G FVD A + DD + LG LLMQ+ P+E++ E
Sbjct: 315 MSIKEL-CTNEEIPPKFGICFVDTATAEFNLVHFEDDINRTKLGTLLMQIKPRELVTEKG 373
Query: 454 GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF------NGSSSPW 507
L K + ++ S + L + +F D + +++N YF N +S +
Sbjct: 374 RLTKSTIQMIK--STLNEPL-WNMVLPEREFWDDQTTEDEIKMNEYFGSDMTDNEQNSGF 430
Query: 508 SKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL-- 562
++A++ + + SA GG+I +L L LD ++L I+ Y R L +DGQTL
Sbjct: 431 NQAMQELYADPMLMSAFGGMIWYLRSLKLDKELLSAKHIVMYDPIRQGTSLVLDGQTLAN 490
Query: 563 ------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
L + +T GKRL + W+CHPL+ + IN+RLD VE LMK
Sbjct: 491 LEIFQNSYDGGIEGTVFKLLANSITPFGKRLFKRWLCHPLRQPKDINDRLDAVEDLMKLW 550
Query: 605 EVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVF 654
++ VA+ L LPDLERL+ R+ + +L L G ++ + + +
Sbjct: 551 DLHSSVAKQLASLPDLERLMSRIHSGRIKVKEFLLALEGFRMTENVINIL 600
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 136/226 (60%), Gaps = 27/226 (11%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMH-RPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
W V++ I+ +D L A SM+ G RP++L + ++ +K + L HP
Sbjct: 765 WLSVVNTIAQLDALMGLA-KGSMNMGEPACRPVLLDEERS----------TIKFEELRHP 813
Query: 800 FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
GG +DS ++LTGPNMGGKSTLLR TC+A+ILAQLG +VP
Sbjct: 814 CVKPGLGG----------QDSS-----MIVLTGPNMGGKSTLLRQTCVAIILAQLGGYVP 858
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
C L+ D I+TR+GA D IM G+STF+VE TET+ +LQ+AT S+VILDELGRGTST
Sbjct: 859 ARSCYLTPCDRIYTRIGANDNIMGGQSTFMVELTETSKILQEATPRSMVILDELGRGTST 918
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
DGYAIAYAV L I C +FATHY L KEF +P + HM
Sbjct: 919 HDGYAIAYAVLHNLCTHIGCLGIFATHYQALCKEFERNPEINNMHM 964
>gi|124506031|ref|XP_001351613.1| DNA repair protein, putative [Plasmodium falciparum 3D7]
gi|23504540|emb|CAD51420.1| DNA repair protein, putative [Plasmodium falciparum 3D7]
Length = 1350
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/354 (35%), Positives = 201/354 (56%), Gaps = 35/354 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L LF ++ ++ +D L+SFA ++ + RP++ P + + + P
Sbjct: 1029 LFHLFYAHYEKYVSACRLVAELDCLQSFAYVVLNTAFPLTRPILHPMD---SKQGEEKTP 1085
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
L ++ HP + N+I +G D + TLLLTGPNMGGKSTLLR T ++V
Sbjct: 1086 FLILEDNIHPVVAMLMPNF-ISNNIYMGCDKEK--QSTLLLTGPNMGGKSTLLRQTAISV 1142
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
ILAQ+G FVPC C L++ D IFTRLG++D + G+STFLVE + +++L+++T+ SL I
Sbjct: 1143 ILAQIGAFVPCTYCELTVVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAI 1202
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTS+FDG AIA + Q+ + I CR +F+THYH L +E + +++ HM+ +
Sbjct: 1203 LDELGRGTSSFDGTAIALSTLEQISDVIKCRCIFSTHYHLLVEEVKHNKNISNYHMSLSI 1262
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
E +++FLY+ G CP+S+G+ +A +AG+P+++++ A +L
Sbjct: 1263 DDEQE-------KIIFLYKFIKGVCPKSFGIHIAKLAGLPKEIIDLAHEKSLL------- 1308
Query: 1030 SFKSSEQRSEFSSLHEEWLKTI--VNVSRVDCNSDDDDAYDTLFCLWHELKNSY 1081
F ++ +E+ K I N++R N + D+ TLF H+ K +
Sbjct: 1309 ----------FENVTDEFCKIIKYKNITRSLLNEEADEKLVTLF---HKYKKEF 1349
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 41/305 (13%)
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG 469
+GF D A + VG NDD S L +L Q+ P E++Y ++ + KE L F
Sbjct: 600 FGFVVSDIATSYIAVGYCNDDESRIVLRTILAQLCPAEILYSSKNINKEV---LSIFKNI 656
Query: 470 SAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS 529
+ ELT + + + + + ++N YF S LE + A GG I
Sbjct: 657 PTSPELTCLNSFPNIISSFD-----EINKYFENMPS----NLEIYKEQTSVICAFGGFIV 707
Query: 530 HLSRLMLDD-VLRNGDILPYKVYR--DCLRMDGQTL-------------------YLDSC 567
+L L+LD + R I Y +++ + +D L Y++
Sbjct: 708 YLRSLLLDKKIFRFCKIEKYDLFKRETYMVLDATALKHLEILETQSGDTKNSLYDYVNKT 767
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
T+ G R LR WIC PL D E I RLDVV++L N +++ ++ L+KLPD+ERLL ++
Sbjct: 768 CTNFGARNLRRWICSPLLDCEKIRERLDVVDFLKNNEQILSLIRMKLKKLPDIERLLNKI 827
Query: 628 KARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML----MHKEGHIIPSLSR 683
+QAS + V+ ++K F + + + +D +++ + ++G + L +
Sbjct: 828 --CIQASQSERGAVFFDNVVNTKLKEFVTFLNAFK-EIDTMLIDVNRIERDGELPSRLFQ 884
Query: 684 IFKPP 688
I P
Sbjct: 885 ICNTP 889
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 21/179 (11%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK--------KMSASQKQYWNVKSQYMD 286
+W+ P IRD N R PD YD T++ PP K + +Q+W +KS+ D
Sbjct: 362 KWIQPQYIRDINLRTPDHADYDSSTIWTPPPDHKWAIEYKQAHYTPGMQQFWKIKSRNFD 421
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA + H L+W +SG K +G E + +K++ G
Sbjct: 422 KIIFFKMGRFYEIFYIDACLMHTICSLNW---MSGEHK-PHLGFPEQSLHFYAKKVINSG 477
Query: 345 YKVGRIEQLETSEQAKARHTNSV------ISRKLVNVVTPSTTV-DGTIGPDAVHLLAI 396
+KV IEQ+ET ++ + R+ S+ I R++ + T T + D + + +L+
Sbjct: 478 HKVVVIEQMETPKELEQRNKESIGPKDKAIKREINEIYTKGTILHDNMLSAETKYLVCF 536
>gi|302657967|ref|XP_003020694.1| hypothetical protein TRV_05220 [Trichophyton verrucosum HKI 0517]
gi|291184551|gb|EFE40076.1| hypothetical protein TRV_05220 [Trichophyton verrucosum HKI 0517]
Length = 1217
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 167/545 (30%), Positives = 259/545 (47%), Gaps = 65/545 (11%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
+++ WL + I D ++ P YD RTLYIPP A K S +KQYW +K ++ D ++FF
Sbjct: 281 NRYPWL--ANIMDMDKNPLGHPDYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTIVFF 338
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
K GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++
Sbjct: 339 KKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVD 396
Query: 352 QLETS-------------EQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAI 396
Q E++ + KA+ + VI R+L V+T T V+G++ G + + +AI
Sbjct: 397 QSESALSKEMREREDKGNKMGKAQKEDKVIKRELACVLTTGTLVEGSMIQGDMSTYCVAI 456
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE +G +G +FVD A + ++ DD + Q P+E++ E +
Sbjct: 457 KEAII---DGLPAFGISFVDTATGQFFLSQFVDDVDMTRFETFVAQTRPQELLLEKSAMS 513
Query: 457 KEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKA 510
+A + L K + G L L P +F +A + + YF +S W +A
Sbjct: 514 TKALRIL-KNNTGPTTLWNYLKPG---KEFWEADVTVRELDAGSYFVSEDKNHASAWPQA 569
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----- 562
L++ D+ SA G L+ +L L D++ G+ Y + L +DGQTL
Sbjct: 570 LQDARDKDLVMSAFGALLQYLEMLKTGRDLITIGNFTWYDPIKKASSLVLDGQTLINLEI 629
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
L+ CVT GKRL + W+CHPL D++ IN RLD VE L +S V
Sbjct: 630 FANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDIKKINARLDAVESLNADSTVR 689
Query: 608 MVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL 667
+ L K+PDLERL+ RV A + V L G + ++ + + G + L
Sbjct: 690 EQFSSQLTKMPDLERLISRVHAGTCKAQDFVRVLEGFEQIEYTMGLLKEAGSGHGLIGQL 749
Query: 668 LMLMHKEGHIIPSLSRIFK--PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAE 725
+ M P L+ + K FD S + + E I+ +F D ++ L+ E
Sbjct: 750 ISAM-------PDLNGLLKFWETAFDRSKARESDILVPEEGIEEEF-DASKKNIEQLEDE 801
Query: 726 TLSIL 730
+L
Sbjct: 802 LEQVL 806
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 153/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + S W + I+ +D L A ++ RP + D+ VL
Sbjct: 889 FDKDYSSWLAAVKIIAQLDCLIGLAKASTALGHPSCRPTFV----------DDERSVLDF 938
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + G +PND+ LG D+ + LLTG N GKST+LR TC AVI+AQ
Sbjct: 939 QELRHPCMMPNVGDF-IPNDVKLGGDTSNIN----LLTGANAAGKSTVLRMTCTAVIMAQ 993
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 994 IGCYVPCEYARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1053
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1054 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRI------ 1107
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1108 -HVDDAERRVTFLYKLEDGVAEGSFGMHCASMCGIPSKVVEGAEVAA 1153
>gi|194336140|ref|YP_002017934.1| DNA mismatch repair protein MutS [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308617|gb|ACF43317.1| DNA mismatch repair protein MutS [Pelodictyon phaeoclathratiforme
BU-1]
Length = 872
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 239/854 (27%), Positives = 370/854 (43%), Gaps = 149/854 (17%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
K+ S +QY VK +Y D LL F+VG FYE + DA L+ +T + G
Sbjct: 10 KEHSPMMRQYLEVKERYPDFLLLFRVGDFYETFFDDAVTVSAALNIVLT-KRTAEIPMAG 68
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG 387
+ + KLV +G+KV +Q+E AK ++ R++ +++TP T +
Sbjct: 69 FPHHASEGYIAKLVKKGFKVAVCDQVEDPADAKG-----IVRREITDIITPGITYSDKVL 123
Query: 388 PD-------AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
D AV L KEG +++ G AF+D + +++ + L +
Sbjct: 124 DDCHNNYLCAVAFL--KEGR------TLLAGVAFIDVTTAEFKIASLHIEE----LKDFV 171
Query: 441 MQVSPKEVIYENRGLCKEAQKALRK-FSAGSAALELTPAMAVTDFLDASEVK----KLVQ 495
+ + P EV+ + KE + L+K S+ + EL M D A EV K
Sbjct: 172 LSLHPSEVLVSSAE--KERSELLKKALSSETLVTELDSWMFSED--QAQEVLSRQFKTHS 227
Query: 496 LNGY-FNGSSSPWSKA------LENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
L G+ +G+ + A +E Q+ + + G + + LD RN +I+
Sbjct: 228 LKGFGIDGNRAGRVAAAVILQYIEETRQNRLHYITRIGELHSAEYMTLDLQTKRNLEII- 286
Query: 548 YKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDV-------------------- 587
+D + +D G RLLR W+ PLK V
Sbjct: 287 -SSMQDGTQNGSLLQVIDRTRNPMGARLLRRWLQRPLKRVDEIRMRLDAVGELSECREMR 345
Query: 588 EGINNRLDVV---EYLMKNSEVVMVVAQYLRKL-------PDLERLL---GRVKARVQAS 634
E ++ +L + E + + + +R+L P L+ LL G + AS
Sbjct: 346 EALSEQLSAINDLERCLARIATFRTIPREVRQLGLSLSAIPILQELLREAGSARLIALAS 405
Query: 635 SCIVLPLIGKKVLKQ-------QVKVFGSLVKGLRIAMD------------LLMLMHKE- 674
+ LP + + + ++ G + G +D LL + +E
Sbjct: 406 NLKPLPELAASIEQAIDPESGASMRDGGYIRTGYHAELDELRTIASTAKDRLLQIQQEER 465
Query: 675 -----GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEA------AIDSDFPDYQNHDVTDLD 723
+ S +++F I +DK +E A P + ++ L+
Sbjct: 466 AATTISSLKVSFNKVFGYYIEISRANIDKVPAYYEKKQTLVNAERYTIPALKEYEEKILN 525
Query: 724 AETLSILIE---------LFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL 774
+E S L+E L E AS E I+ ID L SFA+ AS +P I+
Sbjct: 526 SEEKSFLLEAQLFHDLCLLIAENASAIQENAALIAEIDSLCSFALCAS--EYGYCKPEIM 583
Query: 775 PQSKNPAVRQDNGG--PVL-KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLT 831
K V GG PVL ++ P+ VPND E + L++T
Sbjct: 584 THEKLAIV----GGRHPVLERMMSAEDPY---------VPNDCHFDEKQ-----QMLIIT 625
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNM GKS+ LR T L V+LAQ G FVP E + L D IFTR+GA+D + +GESTFLVE
Sbjct: 626 GPNMAGKSSFLRQTGLIVLLAQAGSFVPAERAEIGLVDRIFTRVGASDNLASGESTFLVE 685
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951
E AS+L AT SL++LDE+GRGTSTFDG +IA+++ + I R LFATHYH L
Sbjct: 686 MNEAASILNNATSKSLLLLDEIGRGTSTFDGMSIAWSMSEYICRSIGARTLFATHYHELA 745
Query: 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
+ + P V + ++S ++FL ++ G+ SYG++VA MAG+P +
Sbjct: 746 ELESRLPGVVNYNATVVETADS---------VIFLRKIIRGSTDNSYGIEVAKMAGMPAE 796
Query: 1012 VVEAASHAALAMKK 1025
V+ A M+K
Sbjct: 797 VISRAKEILAGMEK 810
>gi|312072605|ref|XP_003139141.1| hypothetical protein LOAG_03556 [Loa loa]
gi|307765695|gb|EFO24929.1| hypothetical protein LOAG_03556 [Loa loa]
Length = 1204
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 177/292 (60%), Gaps = 20/292 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F +++ +W+ V+ ++ DVL S + M RP + SK PVL+I
Sbjct: 887 FGDRSIKWTMVVERMAVFDVLLSLTLYGQDCGLNMCRPQFIYDSK---------LPVLEI 937
Query: 794 KGLWHP--FALGENGG--LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
K +HP A+ +G +PN +LLG + P T+LLTGPNMGGKSTL+R + V
Sbjct: 938 KSGYHPSLAAIAASGSSFTYIPNSVLLGGNQ----PSTILLTGPNMGGKSTLMRQVGVLV 993
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LAQ+G FVP + LS D IFTR+GA DRI G+STF VE ET +L+ AT+ SLVI
Sbjct: 994 VLAQIGSFVPADEMKLSPVDRIFTRMGAGDRITAGQSTFYVELYETNLILRNATKHSLVI 1053
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGTST+DG AIAYAV + R+NCR F+THYH L K + + HMAC
Sbjct: 1054 MDELGRGTSTYDGTAIAYAVLLDMATRLNCRTFFSTHYHGLCKAVQNISSIKAAHMACIV 1113
Query: 970 KS-NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ N+E+ + + + FLY LT G CP+SYG A ++G+ +V+ AA A+
Sbjct: 1114 ENENAEDPTM--ENVTFLYTLTDGICPKSYGFFAAKISGLKTEVIRAAFAAS 1163
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 219/475 (46%), Gaps = 91/475 (19%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
FE+L P +IRDA++R P Y RTLY+P +KK + +Q+W KS Y D +LFFKV
Sbjct: 213 FEFLQPDRIRDADKRLRSHPDYCPRTLYVPDAFMKKQTPGHRQWWAAKSAYFDTILFFKV 272
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYE+Y +DA IG + L+ C G E ++LV RGYKV R+EQ
Sbjct: 273 GKFYEMYHMDAVIGVENLNLNYMRGSFAHC---GFPEVAYGRFADQLVNRGYKVARVEQT 329
Query: 354 ETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGTI-GPD-----------AVHLLAI 396
ET Q ++R+ + V+ R++ N+ TP T G + G D A +L A+
Sbjct: 330 ETPTQLESRNKIEKANDKVVRREVCNITTPGTRTYGVLDGNDEQSTVDVMDTTARYLYAV 389
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
E SV YG F+D R ++G ++D ++ +AL L P +++YE RG
Sbjct: 390 AERG----TESVQYGVCFIDTTVGRFYIGCLSDGSNRSALRTLFSHYQPAQILYE-RG-- 442
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
+ + + +++ +A+ +FL + + KL+ + YF W L +++
Sbjct: 443 RVSASTMTVYNSTVSAVPKEALFPKKEFLTSEDTLKLLADDKYFGKLYDKWPVVLLDMID 502
Query: 517 -----------HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVY---------RDCL 555
+D SALG +I +L R +D D++ YK +D +
Sbjct: 503 RDSLIPKCNPAYDACVSALGAIIWYLRRCFVDVDMISMRRFELYKPMNLTGPLSHDKDEI 562
Query: 556 RM-----DGQTLYLDS------------------------------------CVTSSGKR 574
+ G+ L LDS C T +GKR
Sbjct: 563 EVGVHYWRGRRLILDSLTLKHLNIIPPIGSMKKFAPRDPITTKYTLYNVINKCATPAGKR 622
Query: 575 LLRSWICHPLKDVEGINNRLDVVEYL--MKNSEVVMVVAQYLRKLPDLERLLGRV 627
LLR W+C P+ D E +++R D +E+L + + + L K+PDLERL+ ++
Sbjct: 623 LLRQWVCAPVCDQEILSSRQDAIEWLSEARLKGFIDKARERLCKVPDLERLVQKI 677
>gi|323454910|gb|EGB10779.1| hypothetical protein AURANDRAFT_71064 [Aureococcus anophagefferens]
Length = 1140
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/295 (43%), Positives = 175/295 (59%), Gaps = 25/295 (8%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
+ + L F ++ +W+ A++C+ L + A +S RP AV +
Sbjct: 852 DQMRSLFAAFDKERDRWAA---AVACVGTLDALLALAHVS----RRPGF-----ARAVLE 899
Query: 785 DNGGPVLKIKGLWHPFALGE--NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
D P + I HP G+ + G + ND+ +G PR LLL+GPNMGGKSTLL
Sbjct: 900 DGAEPFVAIDDGAHPCLAGDGASAGDVIANDVHVG----GAKPRMLLLSGPNMGGKSTLL 955
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R C++ ILAQ GCFV LS D +FTRLGA+DRI+ G+STF+VE ETA++L++A
Sbjct: 956 RHVCVSAILAQAGCFVKARAMRLSPVDRVFTRLGASDRILMGQSTFMVELLETAAILKQA 1015
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
+ SLVILDELGRGT+T+DG AIA+AV LV CR LFATHYH L +A H V L
Sbjct: 1016 SAKSLVILDELGRGTATWDGAAIAHAVVHHLVANSKCRALFATHYHDLVASWAGHSDVQL 1075
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
HM C S+ +VFLY+LT G P+S+G+ VA +A +P+KV++ A+
Sbjct: 1076 GHMDCLVDPESDT-------VVFLYKLTDGCSPKSFGINVAKLAKLPKKVLDRAA 1123
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 117/266 (43%), Gaps = 40/266 (15%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEAL----KKMSASQKQYWNVKSQYMDVLLFFKVGKFYE 298
RDA RP D +D RTL +P + K +S Q+Q+W VKS + D LLFFK+GKFYE
Sbjct: 293 RDAAGLRPGDAGFDCRTLKVPKDCAVYRGKGLSEVQRQWWAVKSTHFDCLLFFKIGKFYE 352
Query: 299 LYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQ 358
+Y +DA++G ++ + G+ G E VE LVA+G+KV R+EQ ET +
Sbjct: 353 MYHMDADVGVRD---GGLVYMKGEQAHSGFPELAYGKYVEALVAKGHKVARVEQTETPDG 409
Query: 359 AKAR------------HTNSVISRKLVNVVTPSTTV----------DG-----TIGPDAV 391
K R + R++ +VVTP T DG GP
Sbjct: 410 TKLRVERLKKKGRKPSSAEKTMRREVCSVVTPGTRTYSVLDMRLEKDGGGFEPVAGP--T 467
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
L A++E +G YG D + DDA L LL + EV+ E
Sbjct: 468 LLAAVREREV---DGVFTYGVCVCDAPTGTFTLAQFEDDAMRTRLRTLLADKACAEVLVE 524
Query: 452 NRGLCKEAQKALRKFSAGSAALELTP 477
+ +R+ S +A L P
Sbjct: 525 RAAAASDLVDVVRR-STTAAVESLAP 549
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D C T G+RLLR W+ PL D + +R D V L+++ + + L +LPDLERL
Sbjct: 577 VDHCKTPFGRRLLREWLARPLVDARDVADRTDAVAELVEDRALADALRSKLARLPDLERL 636
Query: 624 L 624
L
Sbjct: 637 L 637
>gi|160939142|ref|ZP_02086493.1| hypothetical protein CLOBOL_04036 [Clostridium bolteae ATCC BAA-613]
gi|158438105|gb|EDP15865.1| hypothetical protein CLOBOL_04036 [Clostridium bolteae ATCC BAA-613]
Length = 881
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 250/942 (26%), Positives = 382/942 (40%), Gaps = 200/942 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+ Y K +Y D +LF+++G FYE++ DA KEL+ +T G + G+
Sbjct: 3 QHYMETKKEYPDCVLFYRLGDFYEMFFDDALTVSKELEITLTGKDCGLSERAPMCGVPFH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D + +LV +GYKV EQ+E QAK ++ R+++ VVTP GTI V
Sbjct: 63 ALDSYLYRLVQKGYKVAIAEQMEDPRQAKG-----LVKREVIRVVTP-----GTITSSQV 112
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
G +YG + D + V ++ D L + + SP E+I
Sbjct: 113 LDETKNNYLMGIVYMDGIYGISTADISTGDFMVTEVDSDRE---LFDEINKFSPSEII-- 167
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKAL 511
C A + +G EL V + L+ F G S +
Sbjct: 168 ----CNNA-----FYMSGVDMDELKNRYQVV----------ISALDSRFFGEESCRRILM 208
Query: 512 EN----------VMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY------------- 548
E+ + + G A G ++ ++ + I PY
Sbjct: 209 EHFKVGALVGLGLEDYATGIIAAGAVMQYIYETQKSTLEHITTITPYSTGQYMVIDTSTR 268
Query: 549 ------KVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
+ R+ + LD T+ G RLLR+ I PL + I R + VE L
Sbjct: 269 RNLELVETMREKQKRGTLLWVLDKTKTAMGARLLRACIEQPLIHRDEIIKRQNAVEELNM 328
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVF 654
N + +YL + DLERL+GR+ + SS +LP I + + + ++
Sbjct: 329 NYISREEICEYLNPIYDLERLIGRISYKTANPRDLIAFRSSLEMLPYIKRILGEFNSELL 388
Query: 655 GSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDK---------------- 698
L + L D+ L+ G I + +PPI G+ K
Sbjct: 389 AELGRELDPLQDIFQLI---GDAI-----VEEPPITVREGGIIKDGYNQEADKLRHAKTE 440
Query: 699 ---FLTQFEA---------------------------AIDSDFPDYQNHDVTDLDAET-- 726
+L + EA + PDY T +AE
Sbjct: 441 GKNWLAELEAKEKEKTGIKTLKVKFNKVFGYYFEVTNSFKDQVPDYYIRKQTLTNAERFT 500
Query: 727 ------------------LSILIELFIEKASQW-SEVIHAISCIDVLRSFAVTASMSSGA 767
+S+ +LF E + +EVI + V S+S A
Sbjct: 501 TDELKQLEDIIMGAEEKLVSLEYDLFCEVRDKIGAEVIRIQKTAKSIAGIDVFCSLSVVA 560
Query: 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPR 826
R + P N V++IK HP + V ND L D+ R
Sbjct: 561 TRRNYVKPSI--------NDKGVIQIKNGRHPVVEQMMRDDMFVANDTFL----DNGKNR 608
Query: 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGES 886
++TGPNM GKST +R L V++AQLG FVP + + + D IFTR+GA+D + +G+S
Sbjct: 609 LSVITGPNMAGKSTYMRQVALIVLMAQLGSFVPAQEADIGICDRIFTRVGASDDLASGQS 668
Query: 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFA 944
TF+VE TE A++L+ AT++SL++LDE+GRGTSTFDG +IA+AV + + + + LFA
Sbjct: 669 TFMVEMTEVANILRNATRNSLLVLDEIGRGTSTFDGLSIAWAVIEHISNSKLLGAKTLFA 728
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT+ L+ K+ + ++VFL ++ G +SYG+QVA
Sbjct: 729 THYHELTE---------LEGTIAGVKNYCIAVKEQGDDIVFLRKIVRGGADKSYGIQVAK 779
Query: 1005 MAGVPQKVVEAASHAA--------LAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSR 1056
+AGVP V+ A A A K I E + Q E L+ +S
Sbjct: 780 LAGVPDSVIARAKEIAEELSDADITARAKEIAEISSNITQHKAVPKPDEVDLQ---QLSF 836
Query: 1057 VDCNSDDD----------------DAYDTLFCLWHELKNSYQ 1082
D DDD DA +TL+ L +LKN ++
Sbjct: 837 FDTVKDDDIIRELDSLELSTMTPLDAMNTLYRLQTKLKNRWK 878
>gi|327296443|ref|XP_003232916.1| DNA mismatch repair protein msh6 [Trichophyton rubrum CBS 118892]
gi|326465227|gb|EGD90680.1| DNA mismatch repair protein msh6 [Trichophyton rubrum CBS 118892]
Length = 1217
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 147/442 (33%), Positives = 224/442 (50%), Gaps = 55/442 (12%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
+++ WL + I D ++ P YD RTLYIPP A K S +KQYW +K ++ D ++FF
Sbjct: 281 NRYPWL--ANIMDMDKNPLGHPDYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFF 338
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
K GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++
Sbjct: 339 KKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVD 396
Query: 352 QLETS-------------EQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAI 396
Q E++ + KA+ + VI R+L V+T T V+G++ G + + +AI
Sbjct: 397 QSESALSKEMREREDKGNKMGKAQKEDKVIKRELACVLTTGTLVEGSMIQGDMSTYCVAI 456
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE +G +G +FVD A + ++ DD + Q P+E++ E +
Sbjct: 457 KEAII---DGLPAFGISFVDTATGQFFLSQFVDDVDMTRFETFVAQTRPQELLLEKSVMS 513
Query: 457 KEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKA 510
+A + L+ + G L L P +F +A + + GYF +S W +A
Sbjct: 514 TKALRILKN-NTGPTTLWNYLKPG---KEFWEADVTVRELDAGGYFVSEDKNHASAWPQA 569
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----- 562
L++ ++ SA G L+ +L L + D++ G+ Y + L +DGQTL
Sbjct: 570 LQDSRDKELVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIKKASSLVLDGQTLINLEV 629
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
L+ CVT GKRL + W+CHPL D++ IN RLD VE L +S V
Sbjct: 630 FANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDIKKINARLDAVESLNADSTVR 689
Query: 608 MVVAQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ RV A
Sbjct: 690 EQFSSQLTKMPDLERLISRVHA 711
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 155/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + S W I I+ +D L A ++ RP+ + D+ VL
Sbjct: 889 FDKDYSSWLASIKIIAQLDCLIGLAKASTALGHPSCRPIFV----------DDERSVLDF 938
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + N G +PND+ LG D+ + LLTG N GKST+LR TC AVI+AQ
Sbjct: 939 QELRHP-CMMPNVGDFIPNDVKLGGDTSNIN----LLTGANAAGKSTVLRMTCTAVIMAQ 993
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 994 IGCYVPCEYARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATSRSLVILDEL 1053
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1054 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRI------ 1107
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1108 -HVDDAERRVTFLYKLEDGVAEGSFGMHCASMCGIPSKVVEGAEVAA 1153
>gi|302502899|ref|XP_003013410.1| hypothetical protein ARB_00228 [Arthroderma benhamiae CBS 112371]
gi|291176974|gb|EFE32770.1| hypothetical protein ARB_00228 [Arthroderma benhamiae CBS 112371]
Length = 1217
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 223/442 (50%), Gaps = 55/442 (12%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
+++ WL + I D ++ P YD RTLYIPP A K S +KQYW +K ++ D ++FF
Sbjct: 281 NRYPWL--ANIMDMDKNPLGHPDYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTIVFF 338
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
K GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++
Sbjct: 339 KKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVD 396
Query: 352 QLETS-------------EQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAI 396
Q E++ + KA+ + VI R+L V+T T V+G++ G + + +AI
Sbjct: 397 QSESALSKEMREREDKGNKMGKAQKEDKVIKRELACVLTTGTLVEGSMIQGDMSTYCVAI 456
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE +G +G +FVD A + ++ DD + Q P+E++ E +
Sbjct: 457 KEAII---DGLPAFGISFVDTATGQFFLSQFVDDVDMTRFETFVAQTRPQELLLEKSVMS 513
Query: 457 KEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKA 510
+A + L K + G L L P +F +A + + YF +S W +A
Sbjct: 514 TKALRIL-KNNTGPTTLWNYLKPG---KEFWEADVTVRELDAGDYFVSEDKNHASAWPQA 569
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----- 562
L++ D+ SA G L+ +L L + D++ G+ Y + L +DGQTL
Sbjct: 570 LQDARDKDLVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIKKASSLVLDGQTLINLEI 629
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
L+ CVT GKRL + W+CHPL D++ IN RLD VE L +S V
Sbjct: 630 FANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDIKKINARLDAVESLNADSTVR 689
Query: 608 MVVAQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ RV A
Sbjct: 690 EQFSSQLTKMPDLERLISRVHA 711
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 154/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + S W + I+ +D L A ++ RP+ + D+ VL
Sbjct: 889 FDKDYSSWLAAVKIIAQLDCLIGLAKASTALGHPSCRPIFV----------DDERSVLDF 938
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + G +PND+ LG D+ + LLTG N GKST+LR TC AVI+AQ
Sbjct: 939 QELRHPCMMPNVGDF-IPNDVKLGGDTSNIN----LLTGANAAGKSTVLRMTCTAVIMAQ 993
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 994 IGCYVPCEYARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1053
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1054 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRI------ 1107
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1108 -HVDDAERRVTFLYKLEDGVAEGSFGMHCASMCGIPSKVVEGAEVAA 1153
>gi|380011142|ref|XP_003689671.1| PREDICTED: probable DNA mismatch repair protein Msh6-like [Apis
florea]
Length = 1126
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 124/283 (43%), Positives = 170/283 (60%), Gaps = 18/283 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F EK W+ ++ +S +DVL ++T SG M P I + N + I
Sbjct: 827 FSEKYDMWNMAVYKLSVLDVL--ISLTEYALSGDMCVPEINDGT--------NEKIFIDI 876
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ HP + + +PND LL ++ ++LTGPNMGGKSTL+R L I+AQ
Sbjct: 877 RDGRHPCIISDTF---IPNDTLLATEN---FASFMILTGPNMGGKSTLMRQVALLTIMAQ 930
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G +VP C L+L D IFTRLGA D I+ G+STFLVE +ET+++LQ AT SLV+LDEL
Sbjct: 931 IGSYVPASSCRLTLVDRIFTRLGANDDILAGQSTFLVELSETSAILQHATPYSLVLLDEL 990
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIA AV L ++NCR LF+THYH L +++ + +TL HMAC + N
Sbjct: 991 GRGTSTYDGTAIAAAVVNALT-KLNCRTLFSTHYHSLVEDYKNDKKITLAHMACMVE-NE 1048
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
E + + FLY+L+ GACP+SYG A + GVP + A
Sbjct: 1049 EQDEVSQETVTFLYKLSEGACPKSYGFNAARLGGVPAIITNRA 1091
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/538 (27%), Positives = 235/538 (43%), Gaps = 78/538 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K+++L P+KIRD N++ D YD +TLY+P + L + + + +Q+W +KS++ D +LFFK
Sbjct: 181 KYDFLQPNKIRDINKKPLSDSDYDSKTLYVPLDFLNQQTPAMRQWWELKSKHFDCVLFFK 240
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
+GKFYELY +DA IG EL G+ G E G L+ RGYKV R+EQ
Sbjct: 241 LGKFYELYHMDAVIGVNELHLTYMR---GEFAHSGFPEIGYGRFSASLIERGYKVARVEQ 297
Query: 353 LETSEQAKARHTNSV---------------ISRKLVNVVTPSTTVDGTIGPDAVHLLAIK 397
E + R +N + I+ K V TP T P++ +LL++
Sbjct: 298 TENPDMMAQRVSNMIRPTKFDKVVKREICQITSKGTRVYTPQDIEPST--PNSNYLLSVI 355
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
E C + YG F+D ++G DD + L LL P V+YE L
Sbjct: 356 E-KCSSGSNISHYGVCFLDTTIGDFYLGQFEDDRCNSRLLTLLAHYPPVHVVYERGNL-- 412
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVM 515
+Q+ L+ F+ AA + + F +S K + YF S+S W L++ +
Sbjct: 413 -SQRTLQIFNNNLAACIKESLLRESQFWSSSTTLKNLHEGDYFKKSNSEFQWPTGLQSYL 471
Query: 516 QH------------DIGFSALGGLISHLSRLMLDD-VLRNGDILPY-------KVYR--- 552
++ ALGG L +L+ +L G Y K +
Sbjct: 472 NKSDSLGLTPAEDKELAVHALGGCTYLLKEYLLEQQLLAQGRFKTYIPPDFSNKTFEASK 531
Query: 553 -------DCLRMDGQTLY--------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
D + ++ ++ LD C T+ GKRLLR W+C P + I R +
Sbjct: 532 FANNMVLDAITINNLRIFGEGSLIKTLDRCCTAFGKRLLREWVCRPSCRKDVIIERQKAI 591
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP------LIGKKVLKQQV 651
+ LM +SE + L LPDLERLL ++ A+ + P G+ K+++
Sbjct: 592 QELMDHSETIQTARSILAGLPDLERLLSKIHAQGNPAKQNNHPDGRAIMFEGQTYSKKRI 651
Query: 652 KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-----DGLDKFLTQFE 704
F + + G + ++ L I+ S +P DG + LD F T F+
Sbjct: 652 IDFITTLNGFEDVLKVIALFEDFCSILISKCTKVEP---DGEFPSLRESLDYFKTAFD 706
>gi|448087041|ref|XP_004196240.1| Piso0_005692 [Millerozyma farinosa CBS 7064]
gi|359377662|emb|CCE86045.1| Piso0_005692 [Millerozyma farinosa CBS 7064]
Length = 1244
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 147/436 (33%), Positives = 225/436 (51%), Gaps = 43/436 (9%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL I+DA +R DDP YD RTLYIP A +A +KQYW +KS+ D ++FFK
Sbjct: 308 RYQWL--VNIKDAQKRPIDDPEYDSRTLYIPQSAWSSFTAFEKQYWEIKSKMWDTVVFFK 365
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DAEI + E D K+ G + GI E + ++ + GYKV +++Q
Sbjct: 366 KGKFYELYENDAEIANTEFDLKLAGGGRANMKLAGIPEMSFEYWAKEFIDHGYKVAKVDQ 425
Query: 353 LETSEQAKAR----HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
ET + R +I R+L ++T T D + D +V+ L+I+E +NG
Sbjct: 426 KETLLAKEMRGGSTKEEKIIKRELSGILTGGTLTDLNMINDDMSVYCLSIREEIL--ENG 483
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
++G AFVD A + + DD C L L+ QV PKE+I E LC A K L KF
Sbjct: 484 CKLFGIAFVDTATSELNLIEFTDDQECTKLDTLITQVKPKEIICEKNNLCSIAVKIL-KF 542
Query: 467 SAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSS-SPWSKALENVMQH----DIG 520
+ S+ V++F D + ++KL++ GY+ +S ++Q+
Sbjct: 543 CSHSSNQIWNNLNPVSEFWDYDTTLQKLIK-GGYYEAQDLDDFSHYPSTLVQYKDEKKCA 601
Query: 521 FSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL-------------- 562
F A GGL+ +L L LD +L G+I Y + ++ L +DG +L
Sbjct: 602 FHAFGGLLFYLRFLKLDSSILSLGNIKEYIISKNTATHLILDGVSLSNLEVLNNSFDGTD 661
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVVAQYLR 615
++ +T GKR+L++W+ HPL D++ IN R D +++ M E ++ + L
Sbjct: 662 RGTLFKLINRAITPFGKRMLKTWLLHPLMDIKKINERFDSIDFFMNGGIEFREMLEKTLN 721
Query: 616 KLPDLERLLGRVKARV 631
LPDLERLL R+ +
Sbjct: 722 SLPDLERLLARIHGKT 737
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 156/302 (51%), Gaps = 24/302 (7%)
Query: 725 ETLSI-LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
ETL + E F + S + + ++ ID L + T+ RP +
Sbjct: 904 ETLKFRMYEKFEKDYSTYMRTLQILAKIDCLIALTKTSETIGFPSCRPTFI--------- 954
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
+ N G V + K L HP G +PND++LG C P LLTG N GKST++R
Sbjct: 955 ESNKGQV-EFKELRHPCFTGTKDF--IPNDVVLG----GCKPNIGLLTGANAAGKSTIMR 1007
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T LA+IL+Q+GC+VP L+ D I TRLGA D IM G+STF VE +ET +L + T
Sbjct: 1008 TTALAIILSQIGCYVPASFAALTPVDRIMTRLGANDNIMQGKSTFFVELSETKRILSRTT 1067
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
S VILDELGRG S+ DG++IA AV + I FATH+ L F +HP +
Sbjct: 1068 PKSFVILDELGRGGSSSDGFSIAEAVLHHIATHIQSLGFFATHFGSLGLSFRNHPQIRPM 1127
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
M N+ N + FLY+L G P S+G+ VA M G+ +++V A AA
Sbjct: 1128 RMGILVDENTRN-------ITFLYKLEEGTAPGSFGMNVAAMCGIAEEIVSNAERAAEEY 1180
Query: 1024 KK 1025
+K
Sbjct: 1181 EK 1182
>gi|70953875|ref|XP_746012.1| DNA repair protein [Plasmodium chabaudi chabaudi]
gi|56526506|emb|CAH77895.1| DNA repair protein, putative [Plasmodium chabaudi chabaudi]
Length = 1136
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 202/353 (57%), Gaps = 44/353 (12%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ LF E ++ I+ +D L++FA A +S + RP IL + + +N
Sbjct: 809 IFHLFYEHYEKYVSACRLIAELDCLQAFAYVAVNTSFPLTRP-ILHFMEYGKMGSENASK 867
Query: 790 VLKIKGLWHPFALGENGGLPV---------PNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
K PF + EN PV PN+I +G D + TLLLTGPNMGGKST
Sbjct: 868 EKK------PFLILENNIHPVVATLMPNFIPNNIYMGCDKEK--ETTLLLTGPNMGGKST 919
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
LLR T ++VILAQ+G FVP C L++ D IFTRLG++D + G+STFLVE + +++L+
Sbjct: 920 LLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLK 979
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
++T+ SL ILDELGRGTS+FDG AIA + Q+ + I CR +F+THYH L +E + ++
Sbjct: 980 QSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDTIKCRCIFSTHYHLLVEEVKHNTNI 1039
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ HM+ + + E +++FLY+ G CP+S+G+ +A +AG+P++++E
Sbjct: 1040 SNYHMSLSIDDDQE-------KIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIE------ 1086
Query: 1021 LAMKKSIGESFKSSEQRSEFSSLHEEWLKTI--VNVSRVDCNSDDDDAYDTLF 1071
LA +KS+ F ++ +E+ K I N+ R + DD T+F
Sbjct: 1087 LAHEKSVL-----------FENVTDEFCKIIKYKNIIRSLLKASDDTTLATMF 1128
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 247/501 (49%), Gaps = 69/501 (13%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPE----ALKKMSAS----QKQYWNVKSQYMD 286
+W+ P IRD N PD+P YD T++ PP+ A++ A +Q+W +KS+ D
Sbjct: 183 KWIQPQYIRDINLNTPDNPNYDSSTIWTPPQDHQWAIEYKQAHYTPGMQQFWKIKSKNFD 242
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA I H L+W ++G K +G E + +K++ G
Sbjct: 243 KIIFFKMGRFYEIFYIDACIMHTICGLNW---MNGEQK-PHLGFPEQSLHLYAKKVINSG 298
Query: 345 YKVGRIEQLETSEQAKARHT------NSVISRKLVNVVTPSTTV-DGTIGPDAVHLLAIK 397
+KV IEQ+ET ++ + R+ + I R++ + T T + D + + +++
Sbjct: 299 HKVVVIEQMETPKELEQRNKVSSGPKDKAIKREVNEIYTKGTILHDNMLSAETKYIICFH 358
Query: 398 EGNC---GPDN-GSVV---YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+ G DN GS +GF D A + VG NDD S L LL Q+ P E++Y
Sbjct: 359 FDDIEDIGDDNTGSQTHCNFGFVVSDVATSYIAVGYCNDDESRIELRTLLAQLCPAEILY 418
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
++ + KE L F A ELT + + + + L ++N YF KA
Sbjct: 419 CSKNVNKEV---LSIFKNIPACPELTSVNSFPNIIAS-----LDEVNKYFEN----IPKA 466
Query: 511 LENVMQHDIGFSALGGLISHL-SRLMLDDVLRNGDILPYKVYR--DCLRMDGQTL----- 562
LE + + A GG I +L S L+ +L+ I Y +++ + + +D L
Sbjct: 467 LEAYKEQNSVICAFGGFIVYLRSLLLDKKLLKFCKIEFYDLFKKDNYMVLDATALKHLEI 526
Query: 563 --------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
Y++ T+ G R +R W+C PL + + IN RLDVVE+L KN ++
Sbjct: 527 LETQSGETKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDKINQRLDVVEFLRKNDHILS 586
Query: 609 VVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLL 668
++ L+KLPD+ERLL ++ +QAS + ++ ++K F + + + ++L
Sbjct: 587 LIRLKLKKLPDIERLLNKI--CIQASQSERGAVFFDNIVNTKLKEFVTFLNAFKEIDNML 644
Query: 669 MLMH---KEGHIIPSLSRIFK 686
+ ++ E +IP +R+F+
Sbjct: 645 IEINSIDNEEDVIP--TRLFE 663
>gi|312384757|gb|EFR29409.1| hypothetical protein AND_01583 [Anopheles darlingi]
Length = 1180
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 169/287 (58%), Gaps = 13/287 (4%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F + S W + ++ +DVL S A A S G P +L NG P
Sbjct: 866 IFEKFSLEYSTWKGCVEMVATLDVLTSLAEYAR-SEGVCCVPELLANG-------SNGKP 917
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+++I+ HP E +PN I +G + L +LLTGPNMGGKSTL+R L
Sbjct: 918 LIEIEEGIHPCIASELMESFIPNGISIGGEGKASL---VLLTGPNMGGKSTLMRQVGLLA 974
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+G +P E C ++L D IFTRLGA+D IM G STFLVE ET+++L+ AT DSLV+
Sbjct: 975 VMAQIGSRIPAERCRMTLVDRIFTRLGASDDIMAGHSTFLVELNETSAILKHATSDSLVL 1034
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG A+A AV L +R CR LF+THYH L F + P + L HMAC
Sbjct: 1035 LDELGRGTATYDGTAVAGAVVHFLADR-QCRTLFSTHYHNLVDSFHADPRIALGHMACMV 1093
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ N E + + FLY+ G CP+SYG A +AG+P +++ A
Sbjct: 1094 E-NEEGDDPTQETVTFLYKYADGPCPKSYGFNAAKLAGMPMAIIKRA 1139
Score = 166 bits (420), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 163/605 (26%), Positives = 256/605 (42%), Gaps = 114/605 (18%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P+KI+D RP YD RTL++P L ++ + +Q+W +KSQ+ D +LFFK
Sbjct: 204 KLEFLKPNKIKDIQGNRPGSEKYDGRTLFVPESFLNTLTPAMRQWWEIKSQHYDCVLFFK 263
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DAE+G EL + G+ G E+ D L+ +GYKV RIEQ
Sbjct: 264 VGKFYELYHMDAEVGVSELGFSFM---KGEFAHSGFPETAYDRMSTSLIEKGYKVARIEQ 320
Query: 353 LET----SEQAKARHTNS----VISRKLVNVVTPSTTVDG-----TIGPDAVHLLAIKEG 399
ET E+ K + TNS V+ R++ V T V G T +++ I E
Sbjct: 321 TETPEMMQERCKVQRTNSKYDKVVRREVCQVTVKGTEVFGQQVRITTNHAPRYMMTIVES 380
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+ YG F+D + +G +DD + L LL SP +I R +
Sbjct: 381 SPAGLGAGCRYGVCFIDTSIGLFHLGEFDDDNQQSRLLTLLSHYSPV-IILTERSATAYS 439
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYF-----NGSSSPWSKALEN 513
+ R F L P A+T+ S K L L F G SS W L +
Sbjct: 440 EGTQRIF---KTLLAHVPREALTNESQLWSGEKTLRYLAEKFYGGSSGGESSKWPPVLRS 496
Query: 514 VMQHD------------IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD--- 558
++ + ALGG I +L R +LD ++P + + +D
Sbjct: 497 LVDDSDSLGLTPKQSSLLALKALGGCIWYLQRSLLDQ-----QVIPLATFEQYIPLDAKD 551
Query: 559 ----GQT------------LYLDS---------------------CVTSSGKRLLRSWIC 581
G+T + LDS C T GKRL W+C
Sbjct: 552 DQTAGETSARIGAANANRYMVLDSITLNNLKIIGGEGSLADRMDHCCTKFGKRLFHHWVC 611
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPL 641
P ++E I R V L+ + ++ V L +LPD+ERL+ ++ A A+
Sbjct: 612 VPSCELEVIVQRQQAVTELIDHVTLLQDVRALLGQLPDMERLVTQIHAFGNATCSGRNHP 671
Query: 642 IGKKVL-------KQQVKVFGSLVKGLR--IAM---------DLLMLMHKEGHI-----I 678
G+ +L K+++ F + + G R IA+ +LL+ + + + I
Sbjct: 672 AGRAILYEELTYGKKKLSDFIATLNGFRALIALPDMFDNAKSELLVRITQSASVGGAFPI 731
Query: 679 PSLSR--IFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIE 736
++ + F FD L + E +DS++ D + + ETL +E ++
Sbjct: 732 ETMRKQLAFFDKAFDHEKALKSGVIAPERGVDSEY------DTVEREIETLKTELEEYLA 785
Query: 737 KASQW 741
+ S++
Sbjct: 786 EQSKF 790
>gi|225556818|gb|EEH05106.1| DNA mismatch repair protein msh6 [Ajellomyces capsulatus G186AR]
Length = 1189
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 148/439 (33%), Positives = 222/439 (50%), Gaps = 53/439 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 299 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWTKFSPFEKQYWEIKQKFWDTIVFFK 356
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 357 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 414
Query: 353 LETS-------EQAKARHT----NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ +Q K+ T + +I R+L V+T T VDG++ D + + +AIKE
Sbjct: 415 SESALGKEMREKQGKSNGTPGKQDKIIRRELSCVLTSGTLVDGSMLQDDMSTYCVAIKEA 474
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N +G AFVD A + ++ DDA + Q P+E++ E + +A
Sbjct: 475 LV---NDLPAFGIAFVDTATGQFYLAEFIDDADMTKFETFVAQTRPQELLLEKSVMSTKA 531
Query: 460 QKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALEN 513
+ L K + G L L P +F +A + + + YF + + W +AL
Sbjct: 532 LRIL-KNNTGPTTLWNYLKPC---KEFWEADVTVRELDASNYFVSEEGDNIAAWPEALRQ 587
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
+ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 588 ARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQTLINLEIFAN 647
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C+T GKRL + W+CHPL D IN+RLD V+ L +S V
Sbjct: 648 SFDGGQEGTLFHLLNRCITPFGKRLFKQWVCHPLMDTRKINSRLDAVDALNADSSVQNQF 707
Query: 611 AQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ RV A
Sbjct: 708 SSQLTKMPDLERLISRVHA 726
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+VI+AQ+GC+VPC+ L+ D I +RLGA D I +STF VE +ET +L +AT SL
Sbjct: 960 SVIMAQIGCYVPCQSARLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILSEATPRSL 1019
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDELGRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1020 VILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLASEFEGHPEIAPRRMRI 1079
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1080 -------HVDEEERRVTFLYKLEEGIAEGSFGMHCASMCGIPNKVVERAEIAA 1125
>gi|68072659|ref|XP_678243.1| DNA repair protein [Plasmodium berghei strain ANKA]
gi|56498644|emb|CAH98713.1| DNA repair protein, putative [Plasmodium berghei]
Length = 1090
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 189/323 (58%), Gaps = 25/323 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ LF E ++ IS +D L++FA A +S + RP++ R+
Sbjct: 763 IFHLFYEHYEKYISACRLISELDCLQAFAYVALNTSFPLTRPILHFME----YRKMGSEH 818
Query: 790 VLKIKGLWHPFALGENGGLPV---------PNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
K K PF + EN PV PN+I +G D + TLLLTGPNMGGKST
Sbjct: 819 ASKEKK---PFLILENNIHPVVATLMPNFIPNNIYMGCDKEK--ETTLLLTGPNMGGKST 873
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
LLR T ++VILAQ+G FVP C L++ D IFTRLG++D + G+STFLVE + +++L+
Sbjct: 874 LLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLK 933
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
++T+ SL ILDELGRGTS+FDG AIA + Q+ + I CR +F+THYH L +E + ++
Sbjct: 934 QSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDTIKCRCIFSTHYHLLVEEVKHNTNI 993
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ HM+ + + E +++FLY+ G CP+S+G+ +A +AG+P++++E A +
Sbjct: 994 SNYHMSLSIDDDQE-------KIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELAHEKS 1046
Query: 1021 LAMKKSIGESFKSSEQRSEFSSL 1043
L + E K + ++ SL
Sbjct: 1047 LLFENVTDEFCKIIKYKNIIRSL 1069
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 142/503 (28%), Positives = 245/503 (48%), Gaps = 72/503 (14%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPE----ALKKMSAS----QKQYWNVKSQYMD 286
+W+ P IRD N PD+P YD T++ PP+ A++ A +Q+W +KS+ D
Sbjct: 136 KWIQPQYIRDINLNPPDNPNYDSSTIWTPPQDHQWAIEYKQAHYTPGMQQFWKIKSKNFD 195
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA I H L+W ++G K +G E + +K++ G
Sbjct: 196 KIIFFKMGRFYEIFYIDACIMHTICGLNW---MNGEQK-PHLGFPEQSLHLYAKKVINSG 251
Query: 345 YKVGRIEQLETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPDAVHLLAIK 397
+KV IEQ+ET ++ + R+ S I R++ + T T + D + + +++
Sbjct: 252 HKVVVIEQMETPKELEQRNKTSSGPKDKAIKREINEIYTKGTILHDNMLSAETKYIICFH 311
Query: 398 ---------EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ N G N +GF D A + VG NDD S L LL Q+ P E+
Sbjct: 312 FDDIEDIEDDNNTGSQN-RCNFGFVVSDVATSYISVGYCNDDESRIELRTLLAQLCPAEI 370
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+Y ++ + KE L F ELT + + + + L ++N YF
Sbjct: 371 LYCSKNISKEV---LSIFKNIPTCPELTSVNSFPNIIAS-----LDEVNKYFEN----IP 418
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYR--DCLRMDGQTL--- 562
KALE + + A GG I +L L+LD +L+ I Y +++ + + +D L
Sbjct: 419 KALEAYKEQNSVICAFGGFIVYLRSLLLDKKILKFCKIEFYDLFKKDNYMVLDATALKHL 478
Query: 563 ----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
Y++ T+ G R +R W+C PL + + IN RLDVVE+L KN +
Sbjct: 479 EILETQSGETKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDKINQRLDVVEFLRKNDHI 538
Query: 607 VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMD 666
+ ++ L+KLPD+ERLL ++ +QAS + ++ ++K F + + + +
Sbjct: 539 LSLIRLKLKKLPDIERLLNKI--CIQASQSERGAVFFDNIVNTKLKEFVTFLNAFKEIDN 596
Query: 667 LLMLMH---KEGHIIPSLSRIFK 686
+L+ ++ E +IP +R+F+
Sbjct: 597 MLIEINSIDNEEDLIP--TRLFE 617
>gi|449685383|ref|XP_002165963.2| PREDICTED: DNA mismatch repair protein Msh6-like [Hydra
magnipapillata]
Length = 354
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 160/242 (66%), Gaps = 6/242 (2%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPR----TLLLTGPNMGGKSTLLRA 844
P + HP N +PNDILLG++ + LL+TGPNMGGKSTL+R
Sbjct: 90 PFFEFVNCRHPCM--PNASDLIPNDILLGKNEHSNNNKKASCCLLITGPNMGGKSTLMRQ 147
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+ +I+AQ+G +VP E+C + D +FTRLGA DRI+ GESTF VE +ET+++ + AT+
Sbjct: 148 AGVLLIMAQMGSYVPAEVCRFTPVDRVFTRLGARDRILHGESTFFVELSETSTIFRHATK 207
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLV+LDELGRGT+T+DG AIA AV +L + + CR LF+THYH + EFA+ P+V + H
Sbjct: 208 HSLVLLDELGRGTATYDGTAIASAVLHELSKGLGCRTLFSTHYHGIVDEFANIPNVKVGH 267
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
MAC + ++E+ + + FLY+LTSGACP+SYG A +AG+P ++++ A +
Sbjct: 268 MACMVECDNEDDDPTKENITFLYKLTSGACPKSYGFNAAKLAGIPLCIIKSGHVKAKQFE 327
Query: 1025 KS 1026
+S
Sbjct: 328 ES 329
>gi|195327727|ref|XP_002030569.1| GM24498 [Drosophila sechellia]
gi|194119512|gb|EDW41555.1| GM24498 [Drosophila sechellia]
Length = 1192
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 177/303 (58%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I +S +DVL S A A + P ++ ++ P ++ + G
Sbjct: 874 LFEKFSNHYDQWKQCIDCVSNLDVLSSLAEYAGQQM-VICVPELVSDAEQPFIQLEEG-- 930
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP A N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 931 -------YHPCA---NASTYIPNGLELGTASEAPLS---LLTGPNMGGKSTLMREVGLLV 977
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 978 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1037
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + +TL HMAC
Sbjct: 1038 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMV 1096
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1097 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQ 1155
Query: 1025 KSI 1027
+ I
Sbjct: 1156 RKI 1158
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 161/547 (29%), Positives = 234/547 (42%), Gaps = 85/547 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 226 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 285
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA++G EL + G+ G E D LV RG+KV R+EQ
Sbjct: 286 VGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILVDRGFKVARVEQ 342
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + KA + V++R++ + T V G+ IGP+ ++LAI E
Sbjct: 343 TETPDMMTDRCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEQ- 401
Query: 401 CGPDNGS-VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
D G+ YG F+D + +G DD +C+ L L+ P + E L +
Sbjct: 402 ---DEGTWSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSALSQRT 458
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS---KALENVMQ 516
Q+ LR G E P +K L + NGS W + +++ M
Sbjct: 459 QQILRTV-LGGILKEPVPGNGKNACSAEKTLKLLAERYYAGNGSDDNWPLVLRTMQSDMD 517
Query: 517 H---------DIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY------------- 551
H + ALG I + + L+ +LP Y++Y
Sbjct: 518 HLGLTPDDNYKLALKALGQCIFFIHKCKLE-----PKVLPMARYQLYVPPDQLADAKPAV 572
Query: 552 -----RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
R + +D TL LD C T GKRLL W+C P DV I
Sbjct: 573 ASTLRRSHMVLDATTLSNLRIIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVAVIKE 632
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG--------RVKARVQASSCIVLPLIGK 644
R D + L++ + V L +PD ER L ++K S +L K
Sbjct: 633 RQDAIGELIRIPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQMDHPDSRAIL-FEEK 691
Query: 645 KVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQF 703
KQ++ F +++KG L + H+ + L R+ + P GS L K L F
Sbjct: 692 LYNKQKLLGFMAVLKGFNDLTKLPTMFHQCKTAL--LKRLTQLPESGGSFPDLSKQLQYF 749
Query: 704 EAAIDSD 710
A D D
Sbjct: 750 ATAFDHD 756
>gi|311992451|gb|ADQ26783.1| putative mismatch repair protein [Tetrahymena thermophila]
Length = 1389
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 128/294 (43%), Positives = 176/294 (59%), Gaps = 25/294 (8%)
Query: 727 LSILIELFIEKASQWSEVIH-AISCI---DVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
LS E F Q E+++ A++CI D L S A S++ +P +P+S N V
Sbjct: 1071 LSPFCERFFHLFYQNRELLYQAVNCIGELDCLCSLA-KCSLNLKIRCKPTFIPESLNKNV 1129
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
++ ++HP L EN VPND + ED+ C+ L+TGPNMGGKSTLL
Sbjct: 1130 --------FELIEMYHPQLLKENKKNLVPNDTIF-EDNVTCM----LVTGPNMGGKSTLL 1176
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLAVILAQLGCF+P + + D IF R+GA+DR++ G+STFLVE ET ++++A
Sbjct: 1177 RQNCLAVILAQLGCFLPAKSFKTIIRDRIFCRIGASDRLLEGKSTFLVEMEETGDIVKEA 1236
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLV+LDELGRGTSTFDG +IAY V R LVE + C LF+THYH L EF + +V
Sbjct: 1237 TNQSLVLLDELGRGTSTFDGVSIAYGVLRYLVENVKCLTLFSTHYHMLVDEFKLYKNV-- 1294
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
Q F +Y +++ F Y+ G+ +S+G+ VA MAG+P V++ A
Sbjct: 1295 QSYVMDF-----DYCSQQKKIDFKYKYIKGSSEKSFGVNVAKMAGLPDSVIDKA 1343
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 22/252 (8%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
+L ++DA R DDP YD TL+IP + LKK + +QYW +K ++ D ++FF+ G+
Sbjct: 302 FLTKKYLKDAEGRPVDDPEYDPSTLFIPIQELKKETPLFQQYWKIKVKHFDKVVFFRFGR 361
Query: 296 FYELYELDAEIGHKELDWKITLSGV-GKCRQVGISESGIDDAVEKLVARGYKVGR-IEQL 353
+ + DA + K D I GV GK I ++ V++L+ + K ++Q+
Sbjct: 362 NFVCFYTDAILMKKLFDCYI---GVWGKRPVANIFDNHYRFYVKELLEKADKSCLVVDQV 418
Query: 354 ETSEQAKARHTNSVISRKLVNVVTPST---TVDGTIGPDAVHLLAIKEGNCGPDNGSVVY 410
+ S+ + +I R++ ++T T VD +A +L+ I E +
Sbjct: 419 QFSDD--RSNEQYLIKREVTQIITKGTYTDYVDNVEDYNARYLMCIVESETDHS-----F 471
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV--IYEN-----RGLCKEAQKAL 463
G +DC ++++ I +D + + +L ++ P E+ ++ N + +CK K
Sbjct: 472 GLVLIDCTTHQIYLDDIKNDPAGNQIRTILRKMKPVEIHSVFNNLSEQTKNICKTTCKPQ 531
Query: 464 RKFSAGSAALEL 475
F EL
Sbjct: 532 FTFDKSFEFYEL 543
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRS 578
FS L + + L LD + N DI + ++D T GKR+L+
Sbjct: 731 SFSLLDSTVQKNTFLHLDAHAIENLDIFEVNLQNRVTSEGSLMSFIDYTKTQFGKRMLKR 790
Query: 579 WICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIV 638
W+ +PLK ++ I R + +E LMK +V+ + L KL D+ER + ++ Q S +
Sbjct: 791 WLSYPLKSIQQIEQRQEAIEDLMKIEDVIEQFDKKLSKLGDVERQISKIFNSSQKSR--L 848
Query: 639 LPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
P + ++K SLV+ L+ ++L++
Sbjct: 849 KPTSFENFSNVRLKDAYSLVEDLKNLEEILLIF 881
>gi|341900974|gb|EGT56909.1| CBN-MSH-6 protein [Caenorhabditis brenneri]
Length = 1193
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 165/289 (57%), Gaps = 12/289 (4%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-G 788
+ E F K W E + IS DVL S A+ + S M P +S P + + G
Sbjct: 874 VFEQFGHKNPIWLETVKLISTFDVLTSLAIFSKSSPFEMCMPEFDFKSAKPYLVVEKGLH 933
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P L + H + N +GE +LLTGPNMGGKSTL+R T +
Sbjct: 934 PCLAM----HARNEVTQTSTFIANSTTMGETE----AAVMLLTGPNMGGKSTLMRQTAVL 985
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
ILA LGC VP + L+ D IFTR+GA DRIM GESTF +E ET +L+ AT+ SL+
Sbjct: 986 AILAHLGCMVPADSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHSLL 1045
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGTSTFDG AIA AV +++ + + CR F+THYH + F HP+V L HM C
Sbjct: 1046 LIDELGRGTSTFDGTAIASAVLQKIADDVMCRTFFSTHYHSICNSFTDHPNVRLAHMKCV 1105
Query: 969 F-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
K N+E+ + D + FLY L SG CP+SYG A +AG+ Q+VV A
Sbjct: 1106 VDKENNEDPTMED--VTFLYELESGICPKSYGFYAAKLAGIDQEVVRKA 1152
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 134/529 (25%), Positives = 227/529 (42%), Gaps = 82/529 (15%)
Query: 174 PDTPGMHRV--VPRLKRILEDNLNIG----DKKNSSLLDSSKRMRLLQDSVAGVKNCEE- 226
PDTP + V ++++++ D + ++K +++ + V K +E
Sbjct: 136 PDTPKSIKTSGVGKVRKVIPDGEEVSLAAVEEKMEKIMEGKGERKKTSIKVGSKKEEDEP 195
Query: 227 -EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYM 285
E +WL P KIRDA +R DP YD +TL++PP+ +K + +Q+W +KSQ+
Sbjct: 196 LERFDHESLDWLKPEKIRDACKRPMSDPEYDPKTLWVPPDFHQKQTPGHRQWWTIKSQHF 255
Query: 286 DVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345
D ++ FKVGKFYE Y +DA + L+ G G E ++L+ GY
Sbjct: 256 DTIILFKVGKFYETYHMDAVEVVRALNIAFMR---GSYAHAGFPEHAASKFADQLMNHGY 312
Query: 346 KVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPST----TVDG--------TIGP 388
KV R+EQ ET + + R+ + V+ R++ V + T +DG T+ P
Sbjct: 313 KVARVEQTETPQMLEERNRKTSAKDKVVRREVCRVTSNGTRTYGVLDGVDLGSATSTLDP 372
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ +LLAIKE + + G YG +D + +G DD + L LL V +
Sbjct: 373 TSKNLLAIKEFH-NSETGKSTYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLANVIVVQA 431
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ E + + L L P FL A +V ++V + YF S W
Sbjct: 432 LVERNSMSASTKAILHGILFSVPIENLLPK---KQFLTADDVVRIVSNDDYFGSEVSNWP 488
Query: 509 KALENVMQH-----------DIGFSALGGLISHLSRLMLD-DVLRNGDILPY-------- 548
L+ +++ + SA G + +L ++D D+L +I Y
Sbjct: 489 DVLKTMLEESSVLPKASSEWQLALSAFGAVFWYLRDSLIDVDMLSMKNITFYDSNAKSSE 548
Query: 549 --KVYRDCLRMDGQTLYLD--------------------------SCVTSSGKRLLRSWI 580
+ + +G+ L LD C T G+RLLRSW+
Sbjct: 549 VQTSNEEKVDWNGKNLILDGTALENLNIVPNGRDSHLTSLYFVINKCSTPFGRRLLRSWL 608
Query: 581 CHPLKDVEGINNRLDVVEYLMKN--SEVVMVVAQYLRKLPDLERLLGRV 627
P D + R + ++++ + + V + L+K+PDL+RLL ++
Sbjct: 609 LQPTCDPTKLRLRQEAIKWMTSSDATSFVDIATATLKKIPDLDRLLQKI 657
>gi|341882591|gb|EGT38526.1| hypothetical protein CAEBREN_00497 [Caenorhabditis brenneri]
Length = 1144
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 165/289 (57%), Gaps = 12/289 (4%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-G 788
+ E F K W E + IS DVL S A+ + S M P +S P + + G
Sbjct: 825 VFEQFGHKNPIWLETVKLISTFDVLTSLAIFSKSSPFEMCMPEFDFKSAKPYLVVEKGLH 884
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P L + H + N +GE +LLTGPNMGGKSTL+R T +
Sbjct: 885 PCLAM----HARNEVTQTSTFIANSTTMGETE----AAVMLLTGPNMGGKSTLMRQTAVL 936
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
ILA LGC VP + L+ D IFTR+GA DRIM GESTF +E ET +L+ AT+ SL+
Sbjct: 937 AILAHLGCMVPADSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHSLL 996
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGTSTFDG AIA AV +++ + + CR F+THYH + F HP+V L HM C
Sbjct: 997 LIDELGRGTSTFDGTAIASAVLQKIADDVMCRTFFSTHYHSICNSFTDHPNVRLAHMKCV 1056
Query: 969 F-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
K N+E+ + D + FLY L SG CP+SYG A +AG+ Q+VV A
Sbjct: 1057 VDKENNEDPTMED--VTFLYELESGICPKSYGFYAAKLAGIDQEVVRKA 1103
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 134/529 (25%), Positives = 228/529 (43%), Gaps = 82/529 (15%)
Query: 174 PDTPGMHRV--VPRLKRILEDNLNIG----DKKNSSLLDSSKRMRLLQDSVAGVKNCEE- 226
PDTP + V ++++++ D + ++K +++ + + V K +E
Sbjct: 101 PDTPKSIKTSGVGKVRKVIPDGEEVSLAAVEEKMEKIMEGKGERKKTSNKVGSKKEEDEP 160
Query: 227 -EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYM 285
E +WL P KIRDA +R DP YD +TL++PP+ +K + +Q+W +KSQ+
Sbjct: 161 LERFDHESLDWLKPEKIRDACKRTMSDPEYDPKTLWVPPDFHQKQTPGHRQWWTIKSQHF 220
Query: 286 DVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345
D ++ FKVGKFYE Y +DA + L+ G G E ++L+ GY
Sbjct: 221 DTIILFKVGKFYETYHMDAVEVVRALNIAFMR---GSYAHAGFPEHAASKFADQLMNHGY 277
Query: 346 KVGRIEQLETSEQAKARHTNS-----VISRKLVNVVTPST----TVDG--------TIGP 388
KV R+EQ ET + + R+ + V+ R++ V + T +DG T+ P
Sbjct: 278 KVARVEQTETPQMLEERNKKTSAKDKVVRREVCRVTSNGTRTYGVLDGVDLGSATSTLDP 337
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ +LLAIKE + + G YG +D + +G DD + L LL V +
Sbjct: 338 TSKNLLAIKE-SYNSETGKSTYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLANVIVVQA 396
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ E + + L L P FL A +V ++V + YF S W
Sbjct: 397 LVERSSMSASTKAILNGILFSVPIENLLPK---KQFLTADDVVRIVSNDDYFGSEVSNWP 453
Query: 509 KALENVMQH-----------DIGFSALGGLISHLSRLMLD-DVLRNGDILPY-------- 548
L+ +++ + SA G + +L ++D D+L +I Y
Sbjct: 454 DVLKTMLEESSVLPKASSEWQLALSAFGAVFWYLRDSLIDVDMLSMKNITFYDSNAKSSE 513
Query: 549 --KVYRDCLRMDGQTLYLD--------------------------SCVTSSGKRLLRSWI 580
+ + +G+ L LD C T G+RLLRSW+
Sbjct: 514 VQTSNEEKVDWNGKNLILDGTALENLNIVPNGRDSHLTSLYFVINKCSTPFGRRLLRSWL 573
Query: 581 CHPLKDVEGINNRLDVVEYLMKN--SEVVMVVAQYLRKLPDLERLLGRV 627
P D + R + ++++ + + V + L+K+PDL+RLL ++
Sbjct: 574 LQPTCDPTKLRLRQEAIKWMTSSDATSFVDIATATLKKIPDLDRLLQKI 622
>gi|326477690|gb|EGE01700.1| DNA mismatch repair protein msh6 [Trichophyton equinum CBS 127.97]
Length = 1215
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 223/442 (50%), Gaps = 55/442 (12%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
+++ WL + I D ++ P YD RTLYIPP A K S +KQYW +K ++ D ++FF
Sbjct: 279 NRYPWL--ANIMDMDKNPLGHPDYDPRTLYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFF 336
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
K GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++
Sbjct: 337 KKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVD 394
Query: 352 QLETS-------------EQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAI 396
Q E++ + KA+ + VI R+L V+T T V+G++ G + + +AI
Sbjct: 395 QSESALSKEMREREDKGNKMGKAQKEDKVIKRELACVLTTGTLVEGSMIQGDMSTYCVAI 454
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE +G +G +FVD A + ++ DD + Q P+E++ E +
Sbjct: 455 KEVII---DGLPAFGISFVDTATGQFFLSQFVDDVDMTRFETFVAQTRPQELLLEKSVMS 511
Query: 457 KEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKA 510
+A + L K + G L L P +F +A + + YF +S W +A
Sbjct: 512 TKALRIL-KNNTGPTTLWNYLKPG---KEFWEADVTVRELDAGDYFVSEDKNKASAWPQA 567
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----- 562
L++ D+ SA G L+ +L L + D++ G+ Y + L +DGQTL
Sbjct: 568 LQDARDKDLVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIKKASSLVLDGQTLINLEI 627
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
L+ CVT GKRL + W+CHPL D++ IN RLD VE L +S V
Sbjct: 628 FANTYDGSSEGTLFHLLNRCVTPFGKRLFKQWVCHPLMDIKKINARLDAVESLNADSTVR 687
Query: 608 MVVAQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ RV A
Sbjct: 688 EQFSSQLTKMPDLERLISRVHA 709
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 154/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F S W + I+ +D L A ++ RP+ + ++ VL
Sbjct: 887 FDRDYSSWLAAVKIIAQLDCLIGLAKASTALGHPSCRPIFVNDERS----------VLDF 936
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
K L HP + N G +PND+ LG D+ + LLTG N GKST+LR TC AVI+AQ
Sbjct: 937 KELRHP-CMMPNVGDFIPNDVKLGGDTSNIN----LLTGANAAGKSTVLRMTCTAVIMAQ 991
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 992 IGCYVPCEYARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1051
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1052 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRI------ 1105
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1106 -HVDDAERRVTFLYKLEDGVAEGSFGMHCASMCGIPSKVVEGAEIAA 1151
>gi|326473228|gb|EGD97237.1| DNA mismatch repair protein Msh6 [Trichophyton tonsurans CBS
112818]
Length = 1215
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 223/442 (50%), Gaps = 55/442 (12%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
+++ WL + I D ++ P YD RTLYIPP A K S +KQYW +K ++ D ++FF
Sbjct: 279 NRYPWL--ANIMDIDKNPLGHPDYDPRTLYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFF 336
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
K GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++
Sbjct: 337 KKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVD 394
Query: 352 QLETS-------------EQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAI 396
Q E++ + KA+ + VI R+L V+T T V+G++ G + + +AI
Sbjct: 395 QSESALSKEMREREDKGNKMGKAQKEDKVIKRELACVLTTGTLVEGSMIQGDMSTYCVAI 454
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE +G +G +FVD A + ++ DD + Q P+E++ E +
Sbjct: 455 KEVII---DGLPAFGISFVDTATGQFFLSQFVDDVDMTRFETFVAQTRPQELLLEKSVMS 511
Query: 457 KEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKA 510
+A + L K + G L L P +F +A + + YF +S W +A
Sbjct: 512 TKALRIL-KNNTGPTTLWNYLKPG---KEFWEADVTVRELDAGDYFVSEDKNKASAWPQA 567
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----- 562
L++ D+ SA G L+ +L L + D++ G+ Y + L +DGQTL
Sbjct: 568 LQDARDKDLVMSAFGALLQYLEMLKIGRDLITIGNFTWYDPIKKASSLVLDGQTLINLEI 627
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
L+ CVT GKRL + W+CHPL D++ IN RLD VE L +S V
Sbjct: 628 FANTYDGSSEGTLFHLLNRCVTPFGKRLFKQWVCHPLMDIKKINARLDAVESLNADSTVR 687
Query: 608 MVVAQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ RV A
Sbjct: 688 EQFSSQLTKMPDLERLISRVHA 709
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 153/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F S W + I+ +D L A ++ RP+ + ++ VL
Sbjct: 887 FDRDYSSWLAAVKIIAQLDCLIGLAKASTALGHPSCRPIFVNDERS----------VLDF 936
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
K L HP + G +PND+ LG D+ + LLTG N GKST+LR TC AVI+AQ
Sbjct: 937 KELRHPCMMPNVGDF-IPNDVKLGGDTSNIN----LLTGANAAGKSTVLRMTCTAVIMAQ 991
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 992 IGCYVPCEYARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1051
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1052 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRI------ 1105
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1106 -HVDDAERRVTFLYKLEDGVAEGSFGMHCASMCGIPSKVVEGAEIAA 1151
>gi|325087831|gb|EGC41141.1| DNA mismatch repair protein [Ajellomyces capsulatus H88]
Length = 1178
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 220/438 (50%), Gaps = 51/438 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 288 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWTKFSPFEKQYWEIKQKFWDTIVFFK 345
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 346 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 403
Query: 353 LETS-------EQAKARHT----NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ +Q K+ T + +I R+L V+T T VDG++ D + + +AIKE
Sbjct: 404 SESALGKEMREKQGKSNGTPGKQDKIIRRELSCVLTSGTLVDGSMLQDDMSTYCVAIKEA 463
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N +G AFVD A + ++ DDA + Q P+E++ E + +
Sbjct: 464 LV---NDLPAFGIAFVDTATGQFYLAEFIDDADMTKFETFVAQTRPQELLLEKSVM---S 517
Query: 460 QKALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENV 514
KALR + L + + +F +A + + + YF + + W +AL
Sbjct: 518 TKALRILKNNTGPTTLWNYLKSCKEFWEADVTVRELDASNYFVSEEGDNIAAWPEALRQA 577
Query: 515 MQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL--------- 562
+ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 578 RDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQTLINLEIFANS 637
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ C+T GKRL + W+CHPL D IN RLD V+ L +S V +
Sbjct: 638 FDGGQEGTLFHLLNRCITPFGKRLFKQWVCHPLMDTRKINARLDAVDALNADSSVQNQFS 697
Query: 612 QYLRKLPDLERLLGRVKA 629
L K+PDLERL+ RV A
Sbjct: 698 SQLTKMPDLERLISRVHA 715
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+VI+AQ+GC+VPC+ L+ D I +RLGA D I +STF VE +ET +L +AT SL
Sbjct: 949 SVIMAQIGCYVPCQSARLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILSEATPRSL 1008
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDELGRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1009 VILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLASEFEGHPEIAPRRMRI 1068
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1069 -------HVDEEERRVTFLYKLEEGIAEGSFGMHCASMCGIPNKVVERAEIAA 1114
>gi|315051840|ref|XP_003175294.1| DNA mismatch repair protein msh6 [Arthroderma gypseum CBS 118893]
gi|311340609|gb|EFQ99811.1| DNA mismatch repair protein msh6 [Arthroderma gypseum CBS 118893]
Length = 1211
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 223/441 (50%), Gaps = 54/441 (12%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
+++ WL +KI D ++ P YD RTLYIPP A K S +KQYW +K ++ D ++FF
Sbjct: 280 NRYPWL--AKIMDMDKNPLGHPDYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTIVFF 337
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
K GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++
Sbjct: 338 KKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVD 395
Query: 352 QLETS------------EQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIK 397
Q E++ + KA+ + VI R+L V+T T V+G++ G + + +AIK
Sbjct: 396 QSESALSKEMREREDKGNKGKAQKEDKVIKRELACVLTTGTLVEGSMIQGDMSTYCVAIK 455
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
E +G +G +FVD A + ++ DD + Q P+E++ E +
Sbjct: 456 ESII---DGLPAFGISFVDTATGQFFLSQFVDDVDMTRFETFVAQTRPQELLLEKSVMST 512
Query: 458 EAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSS-SPWSKAL 511
+A + L K + G L L P +F +A + + YF GS S W + L
Sbjct: 513 KALRIL-KNNTGPTTLWNYLKPG---KEFWEADVTVRELDAGDYFVSGEGSYVSGWPQVL 568
Query: 512 ENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL------ 562
++ D+ SALG L+ +L L + D++ G+ Y + L +DGQTL
Sbjct: 569 QDARDKDLVMSALGALLQYLEMLKIGRDLITIGNFTWYDPIKKASSLVLDGQTLINLEIF 628
Query: 563 --------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
L+ CVT GKRL + W+CHPL D IN RLD VE L +S V
Sbjct: 629 ANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLMDTTKINARLDAVESLNADSTVRE 688
Query: 609 VVAQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ RV A
Sbjct: 689 QFSSQLTKMPDLERLISRVHA 709
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 154/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + S W + I+ +D L A ++ RP+ + D+ VL
Sbjct: 887 FDKDYSSWLAAVKIIAQLDCLIGLAKASTALGHPSCRPIFV----------DDERSVLDF 936
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + G +PND+ LG DS + LLTG N GKST+LR TC AVI+AQ
Sbjct: 937 QELRHPCMMPNIGDF-IPNDVKLGGDSSNIN----LLTGANAAGKSTVLRMTCTAVIMAQ 991
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 992 IGCYVPCEYARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1051
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1052 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRI------ 1105
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1106 -HVDDAERRVTFLYKLEDGVAEGSFGMHCASMCGIPSKVVEGAEIAA 1151
>gi|226291537|gb|EEH46965.1| DNA mismatch repair protein msh6 [Paracoccidioides brasiliensis
Pb18]
Length = 1207
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 163/552 (29%), Positives = 257/552 (46%), Gaps = 83/552 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 275 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 332
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 333 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 390
Query: 353 LETSEQAKARHTN-----------SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ + R +I R+L V+T T VDG + D + + +AIKE
Sbjct: 391 SESALGKEMREKQGKTGGSVGKQEKIIRRELACVLTSGTLVDGGMLQDDMSTYCVAIKEA 450
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N V+G AFVD A + ++ DD + Q P+E++ E + +A
Sbjct: 451 LV---NDLPVFGIAFVDTATGQFYLAEFIDDVDMTKFETFVAQTRPQELLLEKSAMSTKA 507
Query: 460 QKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSS----PWSKALENV 514
+ L+ + + L P +F +A + + + YF W + L
Sbjct: 508 LRILKNNTIPTTLWNYLKPG---KEFWEADITVRELDASNYFVSPDGDNLLAWPQVLREA 564
Query: 515 MQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL--------- 562
+ SA G L+ +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 565 RDKEFAMSAFGALVQYLRMLKIERDLITIGNFTWYDPIRKATSLVLDGQTLINLEVFANS 624
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ CVT GKR+ + W+CHPL D + IN RLD V+ L ++ + +
Sbjct: 625 FDGGQEGTLFQLLNRCVTPFGKRMFKQWVCHPLVDTKKINARLDAVDALNADNAIRNQFS 684
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
L K+PDLERL+ +RV A SC + + F +++G +D M +
Sbjct: 685 SQLTKMPDLERLI----SRVHAGSC-------------KAQDFLRVLEGFE-QIDYTMGL 726
Query: 672 HKE--------GHIIPSLSRI-----FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
KE G ++ S+ + + FD S D + EA ++ DF D +
Sbjct: 727 LKETGSGEGVIGQLVSSMPDLSGHLKYWKTAFDRSKAKDSGILVPEAGVEEDF-DVSHDK 785
Query: 719 VTDLDAETLSIL 730
+T+++ E +L
Sbjct: 786 ITEIEYELDQLL 797
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + ++ +D L S A S RP+ + + ++ +L+
Sbjct: 880 FDENYSTWLAAVKVVAQLDCLISLAKATSALGYPSCRPVFVDEERS----------ILEF 929
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L G +PND+ LG ++ P LLTG N GKST+LR TC AVI+AQ
Sbjct: 930 QELRHPCMLPNVGDF-IPNDVKLGGEA----PNINLLTGANAAGKSTILRMTCTAVIMAQ 984
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC VPC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 985 IGCHVPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1044
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1045 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPRRMRI------ 1098
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1099 -HVDEEERRVTFLYKLEEGVAEGSFGMHCASMCGIPNKVVERAEIAA 1144
>gi|384246687|gb|EIE20176.1| hypothetical protein COCSUDRAFT_18682, partial [Coccomyxa
subellipsoidea C-169]
Length = 1204
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 174/292 (59%), Gaps = 20/292 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSS--GAMHRPLILPQSKNPAVRQ 784
L ++ F + + W + A++ +D L S A A + S G M RP ++P ++ RQ
Sbjct: 857 LQGVVRRFAREHAVWEAAVEAMAELDALMSLAAVADVGSAQGPMCRPRLVPADRD---RQ 913
Query: 785 DNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
+ KGL HP A G +PND+ LG D + +LTGPNMGGKSTLL
Sbjct: 914 -----IFTAKGLRHPSAGLHMSAGATFIPNDVELGGDKAPFI----ILTGPNMGGKSTLL 964
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLA ++AQ+G +VP L+ D IF R+GA D IMTG+STFLVE ETA+ L +A
Sbjct: 965 RQVCLAALMAQVGAWVPAVSLELTPVDAIFVRMGARDAIMTGQSTFLVELIETAAALNRA 1024
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLV LDELGRGT+T DG AIA AV +RI CR LFATHYH L A P ++
Sbjct: 1025 TSASLVALDELGRGTATTDGAAIAAAVIHAFTQRIKCRGLFATHYHKLADAHADDPTTSI 1084
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
+HMAC + + + G +++ FLY+L GACP+SYG A +AG+P +++
Sbjct: 1085 RHMAC----HVDRDAAGREQVTFLYQLQDGACPKSYGTACARLAGMPDAILD 1132
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 128/454 (28%), Positives = 204/454 (44%), Gaps = 65/454 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKK--MSASQKQYWNVKSQYMDVLLF 290
+F +L P +IRDA R+RP P Y+ RTLYIP + KK +S Q+Q+W K+Q+ D ++
Sbjct: 225 RFPFLSPQEIRDATRKRPGQPGYNPRTLYIPHDWFKKAKVSEGQRQWWEFKAQHFDSVML 284
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
FK+GKFYE++E+DA +G + L C G E E+LV G +V +
Sbjct: 285 FKMGKFYEMFEMDAHVGAEVLGLTYMKGEQPHC---GFPEVNYLMHAERLVRAGLRVVVV 341
Query: 351 EQLETSEQAKARHTN--------SVISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKE- 398
EQ ET + + R+ N +V+ R++V ++T T D + P+A ++L++ E
Sbjct: 342 EQTETPDMLRIRNDNRPAGQAKCNVVRREVVAILTTGTLADPDMLRTQPEAAYVLSLWER 401
Query: 399 ---GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
+ G + DCA+ + +G +DD + + L A L ++ P E++ GL
Sbjct: 402 PAPPVAPGGPQRTLLGACYADCASNTLTLGQWHDDLTRSQLRAQLAEMRPSELVLPAGGL 461
Query: 456 CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSSSPWSKALENV 514
+ Q+ L+ G L + D + + + G GS W L+
Sbjct: 462 SEATQRVLKAALRGPRTNRLAAPASAADVIHELDTRDYFSCAAGMEAGSRDAWPSLLKEP 521
Query: 515 MQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR---DCLR--------------- 556
+ + ALG HL ++LD G +LP +R C R
Sbjct: 522 AEAEAALLALGLARRHLQEVLLD-----GRVLPLGAFRPLPGCARVAGADAAPDAPRFVA 576
Query: 557 MDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD-- 595
+DG LD C T GKR LR+W+C P+ + I R D
Sbjct: 577 LDGSAFDNLEVLENTEGGSAGSLVACLDMCTTVMGKRQLRAWLCRPMARIADITARQDAG 636
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+V ++ + A+ L +L DLER L R++A
Sbjct: 637 LVPVIVLLAPASPARARELFRLGDLERALARLQA 670
>gi|195590405|ref|XP_002084936.1| GD12570 [Drosophila simulans]
gi|194196945|gb|EDX10521.1| GD12570 [Drosophila simulans]
Length = 1192
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 177/303 (58%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL S A A + P ++ ++ P ++ + G
Sbjct: 874 LFEKFSNHYDQWKQCIDCVANLDVLSSLAEYAGQQM-VICVPELVSDAEQPFIQLEEG-- 930
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP A N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 931 -------YHPCA---NASTYIPNGLELGTASEAPLS---LLTGPNMGGKSTLMREVGLLV 977
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 978 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1037
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + +TL HMAC
Sbjct: 1038 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMV 1096
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1097 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQ 1155
Query: 1025 KSI 1027
+ I
Sbjct: 1156 RKI 1158
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 160/547 (29%), Positives = 234/547 (42%), Gaps = 85/547 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 226 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 285
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA++G EL + G+ G E D LV RG+KV R+EQ
Sbjct: 286 VGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILVDRGFKVARVEQ 342
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + KA + V++R++ + T V G+ IGP+ ++LAI E
Sbjct: 343 TETPDMMTDRCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEQ- 401
Query: 401 CGPDNGS-VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
D G+ YG F+D + +G DD +C+ L L+ P + E L +
Sbjct: 402 ---DEGTWSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSALSQRT 458
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS---KALENVMQ 516
Q+ +R G E P +K L + NGS W + +++ M
Sbjct: 459 QQIVRTV-LGGILKEPVPGNGKNACSAEKTLKLLAERYYAGNGSDDNWPLVLRTMQSDMD 517
Query: 517 H---------DIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY------------- 551
H + ALG I + + L+ +LP Y++Y
Sbjct: 518 HLGLTPDDNYKLALKALGQCIFFIHKCKLE-----PKVLPMARYQLYVPPDQLADAKPAV 572
Query: 552 -----RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
R + +D TL LD C T GKRLL W+C P DV I
Sbjct: 573 ASTLRRSHMVLDATTLSNLRIIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVAVIKE 632
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG--------RVKARVQASSCIVLPLIGK 644
R D + L++ + V L +PD ER L ++K S +L K
Sbjct: 633 RQDAIGELIRMPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQMDHPDSRAIL-FEEK 691
Query: 645 KVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQF 703
KQ++ F +++KG L + H+ + L R+ + P GS L K L F
Sbjct: 692 LYNKQKLLGFMAVLKGFNDLTKLPTMFHQCKTAL--LKRLTQLPESGGSFPDLSKQLQYF 749
Query: 704 EAAIDSD 710
A D D
Sbjct: 750 ATAFDHD 756
>gi|154275572|ref|XP_001538637.1| hypothetical protein HCAG_06242 [Ajellomyces capsulatus NAm1]
gi|150415077|gb|EDN10439.1| hypothetical protein HCAG_06242 [Ajellomyces capsulatus NAm1]
Length = 1188
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 221/439 (50%), Gaps = 53/439 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 299 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWTKFSPFEKQYWEIKQKFWDTIVFFK 356
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 357 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 414
Query: 353 LETS-------EQAKARHT----NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ +Q K+ T + +I R+L V+T T VDG++ D + + +AIKE
Sbjct: 415 SESALGKEMREKQDKSNGTPVKQDKIIRRELSCVLTSGTLVDGSMLQDDMSTYCVAIKEA 474
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N +G AFVD A + ++ DDA + Q P+E++ E + +A
Sbjct: 475 LV---NDLPAFGIAFVDTATGQFYLAEFIDDADMTKFETFVAQTRPQELLLEKSVMSTKA 531
Query: 460 QKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALEN 513
+ L+ + G L L P +F +A + + + YF + + W +AL
Sbjct: 532 LRILKN-NTGPTTLWNYLKPC---KEFCEADVTVRELDASNYFVSEEGDNIAAWPEALRQ 587
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
+ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 588 ARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQTLINLEIFAN 647
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C+T GKRL + W+CHPL D IN RLD V+ L +S V
Sbjct: 648 SFDGGQEGTLFHLLNRCITPFGKRLFKQWVCHPLMDTRKINARLDAVDALNADSSVQNQF 707
Query: 611 AQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ RV A
Sbjct: 708 SSQLTKMPDLERLISRVHA 726
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 159/296 (53%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F E S W + I+ +D L S A +S RP+ +
Sbjct: 895 EVASRFYARFDENYSTWLAAVRTIAQLDCLISLAKASSALGYPSCRPVFV---------- 944
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ VL+ + L HP L G +PND+ LG ++ P LLTG N GKST+LR
Sbjct: 945 DDERSVLEFEELRHPCMLPNVGDF-IPNDVKLGGNT----PNLNLLTGANAAGKSTILRM 999
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC AVI+AQ+GC+VPC+ L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 1000 TCTAVIMAQIGCYVPCQSARLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILFEATP 1059
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I FATHYH L EF HP + +
Sbjct: 1060 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLASEFEGHPEIAPRR 1119
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1120 MRI-------HVDEEERRVTFLYKLEEGIAEGSFGMHCASMCGIPNKVVERAEIAA 1168
>gi|83315667|ref|XP_730891.1| G/T mismatch binding protein [Plasmodium yoelii yoelii 17XNL]
gi|23490759|gb|EAA22456.1| G/T mismatch binding protein-related [Plasmodium yoelii yoelii]
Length = 1261
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 193/340 (56%), Gaps = 35/340 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL---------PQSKNP 780
+ LF E ++ IS +D L++FA A +S + RP++ +S +P
Sbjct: 888 IFHLFYEHYEKYISACRLISELDCLQAFAYVALNTSFPLTRPILHFMECENTMDNKSDDP 947
Query: 781 AVRQDNGGPVLKIKGLW--------HPFALGENGGLPV---------PNDILLGEDSDDC 823
D + K + PF + EN PV PN+I +G D +
Sbjct: 948 NYGDDLNCEIEKDGKMGSENASKEKKPFLILENNIHPVVATLMPNFIPNNIYMGCDKEK- 1006
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
TLLLTGPNMGGKSTLLR T ++VILAQ+G FVP C L++ D IFTRLG++D +
Sbjct: 1007 -ETTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFE 1065
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G+STFLVE + +++L+++T+ SL ILDELGRGTS+FDG AIA + Q+ + I CR +F
Sbjct: 1066 GKSTFLVELEDISNLLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDVIKCRCIF 1125
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
+THYH L +E + +++ HM+ + + E +++FLY+ G CP+S+G+ +A
Sbjct: 1126 STHYHLLVEEVKHNTNISNYHMSLSIDDDQE-------KIIFLYKFIKGICPKSFGIHIA 1178
Query: 1004 VMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSL 1043
+AG+P++++E A +L + E K + ++ SL
Sbjct: 1179 KLAGLPKEIIELAHEKSLLFENVTDEFCKIIKYKNIIRSL 1218
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 141/506 (27%), Positives = 242/506 (47%), Gaps = 74/506 (14%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPE----ALKKMSA----SQKQYWNVKSQYMD 286
+W+ P IRD N PD P YD T++ PP+ A++ A +Q+W +KS+ D
Sbjct: 257 KWIQPEYIRDINLNAPDHPNYDSSTIWTPPQDHQWAIEYKQAHYTPGMQQFWKIKSKNFD 316
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA I H L+W ++G K +G E + +K++ G
Sbjct: 317 KIIFFKMGRFYEIFYIDACIMHTICGLNW---MNGEQK-PHLGFPEQSLHLYAKKVINSG 372
Query: 345 YKVGRIEQLETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPDAVHLLAI- 396
+KV IEQ+ET ++ + R+ S I R++ + T T + D + + +++
Sbjct: 373 HKVVVIEQMETPKELEQRNKTSSGPKDKAIKREINEIYTKGTILHDNMLSAETKYIICFH 432
Query: 397 -----------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
N +GF D A + VG NDD S L LL Q+ P
Sbjct: 433 FDDIEDIGDDDNNNNNAGSQTKCNFGFVVSDVATSYISVGYCNDDESRIELRTLLAQLCP 492
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E++Y ++ + KE L F A ELT + + + + L ++N YF
Sbjct: 493 AEILYCSKNINKEV---LSIFKNIPACPELTSVNSFPNIIAS-----LDEVNKYFEN--- 541
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYR--DCLRMDGQTL 562
KALE + + A GG I +L L+LD +L+ I Y +++ + + +D L
Sbjct: 542 -IPKALEAYKEQNSVICAFGGFIVYLRSLLLDKKILKFCKIEFYDLFKKDNYMVLDATAL 600
Query: 563 -------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
Y++ T+ G R +R W+C PL + + IN RLDVVE+L KN
Sbjct: 601 KHLEILETQSGETKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDKINQRLDVVEFLRKN 660
Query: 604 SEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRI 663
++ ++ L+KLPD+ERLL ++ +QAS + ++ ++K F + + +
Sbjct: 661 DHILSLIRLKLKKLPDIERLLNKI--CIQASQSERGAVFFDNIVNTKLKEFVTFLNAFKE 718
Query: 664 AMDLLMLMH---KEGHIIPSLSRIFK 686
++L+ ++ E +IP +R+F+
Sbjct: 719 IDNMLIEINSIDSEEDLIP--TRLFE 742
>gi|410623640|ref|ZP_11334452.1| DNA mismatch repair protein MutS [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156856|dbj|GAC29826.1| DNA mismatch repair protein MutS [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 904
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 228/851 (26%), Positives = 392/851 (46%), Gaps = 182/851 (21%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI-- 333
QY +K+++ D+LLF+++G FYEL+ DA+ L+ I+L+ GK I +G+
Sbjct: 26 QYLRIKAEHPDILLFYRMGDFYELFFDDAKKASNLLN--ISLTARGKSGGEPIPMAGVPY 83
Query: 334 ---DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---G 387
++ + KLV G V EQ+ +K + R + +VTP T D +
Sbjct: 84 HAAENYLAKLVKMGESVAICEQIGDPATSKG-----PVERAVQRIVTPGTVTDEALLDES 138
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
D+V LLAI + VYG A +D + + + D S A A L ++ P E
Sbjct: 139 KDSV-LLAITKVK-------EVYGLASIDITSGQF---MLFDAQSDEAFQAELQRIQPAE 187
Query: 448 VIYEN-----------RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL 496
++Y +GL + Q +F +A L+L +L
Sbjct: 188 ILYPEQCSFFHLIQKCKGLRRRPQ---WEFDTDTAHLKLNTQFGTK------------EL 232
Query: 497 NGYFNGSSSPWSKALENVMQH--DIGFSALGGLISHLSRLMLDD--VLRNGDILPYKVYR 552
+G+ ++ A V+Q+ + +AL L +S+ D+ ++ ++ R
Sbjct: 233 DGFGINVNAVAMGAAGCVLQYVQETQRTALPHL-RKISQYRADESVLMDAATQQNLELTR 291
Query: 553 DCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
TL+ L++ T+ G RLL+ W+ P+ D + R + + + ++ ++
Sbjct: 292 TLSGSTENTLFSVLNNTSTAMGSRLLQRWLHRPITDKNKLFFRQNSIADVQRHD--YSIL 349
Query: 611 AQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAM----- 665
+L+++ D+ER + AR+ S P + LK+ V + L + LR M
Sbjct: 350 QDFLKQIGDIER----ILARMALRSA--RPRDFSR-LKEAVNILPDLQQWLRDCMPSSQH 402
Query: 666 DLLMLMHKEGHIIPSLSRIFK------PPIF--DG-----------------SDGLDKFL 700
D + ++ P+++ + PP+ DG S G FL
Sbjct: 403 DSFSIFSRDIGEYPNVAELLNRAIIDNPPVVLRDGGVIAEGYSEELDELRALSKGATDFL 462
Query: 701 TQFE----------------------------AAIDSDFPDY-----------------Q 715
+ E A ID PDY +
Sbjct: 463 DRLEQKERERTGIPTLKVNYNRVHGFFIEVSHANIDKIPPDYVRRQTLKNNERYIIPELK 522
Query: 716 NHDVTDLDAETLSILIE------LFIEKASQWSEVIH---AISCIDVLRSFAVTASMSSG 766
H+ L +++ ++ +E LF + A + + ++ A++ +DVL +FA A +
Sbjct: 523 AHEDKVLTSQSKALALEKKLYEALFDDIAPELTSLMQSAVALATLDVLTNFAERADTLN- 581
Query: 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH-PFALGENGGLPVPNDILLGEDSDDCLP 825
+HRP ++ Q+ + + G L ++ + H PF + N + + + +
Sbjct: 582 -LHRPELVEQN----IINYSEGRHLVVEEVMHSPF---------IANPLFMDDKT----- 622
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L V+LA +GC+VP + + D IFTR+GA D + +G
Sbjct: 623 RMLMITGPNMGGKSTYMRQTALIVLLAYVGCYVPAKEAQIGPIDRIFTRIGAADDLASGR 682
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT +SLV++DE+GRGTST+DG ++A++ + L E+++ LFAT
Sbjct: 683 STFMVEMTETANILNNATANSLVLMDEIGRGTSTYDGLSLAWSCAQWLSEKLHAFTLFAT 742
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT S P +T H++ + D E+ F++++ GA +SYGLQVA +
Sbjct: 743 HYFELTSLSDSIPTITNVHLSAV---------EHDDEIRFMHQVQQGAANKSYGLQVAKL 793
Query: 1006 AGVPQKVVEAA 1016
AGVP+ V+++A
Sbjct: 794 AGVPKAVIDSA 804
>gi|255718761|ref|XP_002555661.1| KLTH0G14476p [Lachancea thermotolerans]
gi|238937045|emb|CAR25224.1| KLTH0G14476p [Lachancea thermotolerans CBS 6340]
Length = 1276
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 223/447 (49%), Gaps = 60/447 (13%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
+ +++WL RDA R +DP YD RTL+IP A K + +KQYW +KS+ D +
Sbjct: 308 ENEERYQWL--VHERDAQGRSKEDPDYDSRTLFIPSSAWSKFTPFEKQYWEIKSRMWDCI 365
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKF+ELYE DA +G++ D KI G + GI E D + + GYKV
Sbjct: 366 VFFKKGKFFELYEKDALLGNQLFDLKIAGGGRANMQLAGIPEMSFDYWAMQFIQHGYKVA 425
Query: 349 RIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGNCG--- 402
+++Q E+ + R N ++ R+L +V+T T D G + D A LAIKE G
Sbjct: 426 KVDQRESMLAKEMREGNKGIVKRELQHVLTSGTLTDSGMLQSDQATFCLAIKE-EAGTYH 484
Query: 403 -PDNGSV--------VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
+NG+V ++G AF+D A + + DD+ C+ L L+ QV PKE+I E
Sbjct: 485 DTENGTVEPSKTESKIFGVAFIDTATGEIELLEFEDDSECSKLDTLMSQVKPKEIIMEKN 544
Query: 454 GLCKEAQKALRKFSAGSAAL--ELTPAMAVTDF------LDASEVKKLVQLNGYFNGSSS 505
LC A K + KF+A A+ L P DF L ++E K YF
Sbjct: 545 NLCNLAHKIV-KFNAQPQAIFNYLKPVEEFYDFNKTFDELTSTETK-------YF-ADME 595
Query: 506 PWSKALENVMQ--HDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYR--DCLRMDGQ 560
W L + + +GFSA GGL+S+L L LD+ ++ G+I Y R + L +DG
Sbjct: 596 HWPAVLTHYFEKGKKVGFSAFGGLLSYLKWLKLDEAMITMGNIKEYNPIRSQNSLVLDGV 655
Query: 561 TL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
TL L+ +T GKR+L+ W+ HPL + I RLD V+ L
Sbjct: 656 TLQNLEIFCNSFDNSDRGTLFKLLNRAITPMGKRMLKKWVVHPLLQKKDIEMRLDSVDLL 715
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ E+ V+ L LPDLER L RV
Sbjct: 716 LTKIEIREVLEDKLSLLPDLERFLARV 742
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 151/282 (53%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W + A++ +D + S A + RP + + + NG + K L HP
Sbjct: 931 WMPTLLAVARMDCILSLARASESLGFPCCRPSFVDEVDPVTGNKLNG--FVNFKELRHPC 988
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F +G +PNDI LG DS + LLTG N GKST+LR TC+AVI+AQ+GC+V
Sbjct: 989 FNMGTTSTKDFIPNDISLGRDS----YQIGLLTGANAAGKSTVLRMTCIAVIMAQVGCYV 1044
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
P E LS D I TRLGA D IM G+STF VE +ET +L AT SL++LDELGRG S
Sbjct: 1045 PAEEATLSPIDKIMTRLGANDNIMQGKSTFFVELSETKKILDIATNRSLLVLDELGRGGS 1104
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M S
Sbjct: 1105 SSDGFAIAESVLHHVATHIQSLGFFATHYGGLGLGFKHHPKVKPLKMNIMVDEKS----- 1159
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+E+ FLY+L G S+G+ VA M G+ +++V+ A AA
Sbjct: 1160 --REITFLYKLVEGQSEGSFGMHVASMCGIAKEIVDRAQVAA 1199
>gi|440297793|gb|ELP90434.1| DNA mismatch repair protein msH6, putative [Entamoeba invadens IP1]
Length = 959
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 160/263 (60%), Gaps = 16/263 (6%)
Query: 758 AVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLG 817
A+ + S H + K ++ G KGL HP+ + VP+DI +G
Sbjct: 682 AIETPLQSTTQHTQQMEEDEKYKTIK----GAYFSAKGLRHPYLTVSSKTTAVPSDIEMG 737
Query: 818 EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA 877
++ P++++LTGPNMGGKSTLLR CLAVI+AQ+G E +S+ D IFTR+GA
Sbjct: 738 GENT---PKSIVLTGPNMGGKSTLLRTVCLAVIMAQMGMRCTAEELTMSVIDRIFTRIGA 794
Query: 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI 937
+D I+ G STF+VE ETA +L A+++SLV+LDELGRGTST DG AIA+AV ++ I
Sbjct: 795 SDDILHGMSTFMVELDETAQMLHSASENSLVVLDELGRGTSTHDGLAIAHAVVLYTIKHI 854
Query: 938 NCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPES 997
L+ +THYH L +EF V L HM C N ++VFLY+L G+CP+S
Sbjct: 855 KPLLIVSTHYHQLCEEFGDRGDVKLSHMGCTIVEN---------KIVFLYKLLDGSCPKS 905
Query: 998 YGLQVAVMAGVPQKVVEAASHAA 1020
YG++VA MAG+PQ VV+ A A
Sbjct: 906 YGMKVAEMAGIPQDVVKRAESIA 928
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/454 (29%), Positives = 221/454 (48%), Gaps = 59/454 (12%)
Query: 207 SSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEA 266
++ R R L+ V E + ++++L ++D N +P + YD +L IP
Sbjct: 15 TTTRARELRQEVV-------EKENEERYKFL--QDVKDKNGHKPGESEYDPTSLLIPKLT 65
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L +M+ +KQYWN+K D ++FF GKFYELYE DA+I +KE+D K+ +S V R
Sbjct: 66 LAQMTPFEKQYWNIKKDNFDTVIFFAKGKFYELYENDADIANKEMDLKV-VSRVN-MRMA 123
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTN---------SVISRKLVNVVT 377
G+ ++ KL+ GYK+G ++++ETSE+ K R T +++ R+L + T
Sbjct: 124 GVPKASFSTYASKLLNLGYKIGCVDEMETSEEMKKRGTTVRVNGKKEPNIVRRELRRIYT 183
Query: 378 PSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
ST D + D + + G +N V YG D + R ++G I+D L
Sbjct: 184 VSTLTDPELCLDTSDMFCMSLVFTG-NNVGVCYG----DVSVCRFFLGYIDDTDLHNNLH 238
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
+L +V PKEVI + + ++ Q L+ E++ T+ SEV+KL
Sbjct: 239 TILHRVQPKEVIV-YKTISEDIQNILKNLGFA----EISYVEEKTEKFGKSEVQKLFTER 293
Query: 498 GYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLML-DDVLRNGDILPYKV-YRDCL 555
G + +S+ E VM+ + ++ + L++ D + NG Y D L
Sbjct: 294 GKVPNTLEKYSEN-EGVMK------SFEIMVDYFRTLLIPDKSIVNGSFGEYVTSSNDFL 346
Query: 556 RMDGQTL-------------------YLDSCVTSSGKRLLRS-WICHPLKDVEGINNRLD 595
+D Q++ ++D+C T GKR+LR +I PL DVE I R
Sbjct: 347 IVDAQSIVNLSLYTRKGKEKEGTLLHFVDNCQTPFGKRILREKFILKPLMDVEKILKRQA 406
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
VVE+ ++N +V + +L+ LPDLERLL + A
Sbjct: 407 VVEFFIENPTLVEQLKTFLKPLPDLERLLVQCDA 440
>gi|320581644|gb|EFW95863.1| hypothetical protein HPODL_2146 [Ogataea parapolymorpha DL-1]
Length = 1638
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/434 (33%), Positives = 214/434 (49%), Gaps = 44/434 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL I+DA+ R DP YD RTLYIP A K +A +KQYW +KS+ D ++FFK
Sbjct: 264 RYQWL--VHIKDADGRSESDPDYDPRTLYIPKSAWSKFTAFEKQYWEIKSKMWDSIVFFK 321
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA+IGH++ D K+ +G R GI E D +K + GYKV +++Q
Sbjct: 322 KGKFFELYEKDADIGHQKFDLKLAGTGRANMRLAGIPEMSFDYWAKKFIDEGYKVAKVDQ 381
Query: 353 LETSEQAKARHTNS------VISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNG 406
E+ + R N+ VI R+L V+T T D + D + + ++
Sbjct: 382 KESLLAKEIREKNANTKDDKVIKRELSCVLTCGTLTDEGMLSDEMSRYCLSLKEVTNNDN 441
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
S +G FVD A ++ + DD C L LL Q+ P EV+ E + + + L+
Sbjct: 442 SKTFGVCFVDTATGKIQLTQFEDDVDCNKLETLLAQIQPMEVLIEKSRVSQLVLRMLKFN 501
Query: 467 SAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM------QHDI 519
S A L PA +F + + + YF + N++ ++
Sbjct: 502 SQPHATFNFLKPA---DEFWTSEIAFEQLTRGKYFEANDLDDLSNYPNILVEYYESNKNV 558
Query: 520 GFSALGGLISHLSRLMLDDVLRN-GDILPYKVYR-----DCLRMDGQTL----------- 562
GFSA G L+ +L L LD L + G+I Y Y+ C+R+DG TL
Sbjct: 559 GFSAFGALLWYLKSLKLDTALISMGNIEQYDPYKTSFSDTCMRLDGVTLQNLEIFSNSFD 618
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ V+ GKR +SW+ HPL + I +RLD VE LM + ++ ++
Sbjct: 619 QSDKGTLFKILNRAVSPFGKRTFKSWVTHPLMSRKTIESRLDSVEILMNDGDLKYLLESK 678
Query: 614 LRKLPDLERLLGRV 627
L KLPDLERLL R+
Sbjct: 679 LGKLPDLERLLARI 692
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 158/285 (55%), Gaps = 27/285 (9%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
WS I A++ +D + S A +S ++ P P+ + A Q ++ + L HP
Sbjct: 886 WSSSIKAVAQLDCILSLA----RASESLGMPACRPEFIDSASAQ------IEFQDLRHPC 935
Query: 801 ALGENGGLP-----VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
+ GG+ +PNDI LG D D + LLTG N GKST+LR TC+A I+AQ+G
Sbjct: 936 FIP--GGITGSKDFIPNDISLGVDQKDHIG---LLTGANAAGKSTVLRMTCVATIMAQIG 990
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
CFVP + L+ DTI TRLGA D IM G+STF VE +ET +L+ T SL+ILDELGR
Sbjct: 991 CFVPAKSAKLTPVDTIMTRLGANDNIMQGKSTFYVELSETKKILESCTPRSLIILDELGR 1050
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
G S+ DG+AIA AV + I FATHY L F +HP V M NS N
Sbjct: 1051 GGSSSDGFAIAEAVLHHIATHIQSIGFFATHYATLGNSFINHPRVKPLRMGILVDENSRN 1110
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY+L SG S+G+ VA M GVP+ +V+ A AA
Sbjct: 1111 -------ITFLYKLESGRSSGSFGMHVAAMCGVPKNIVDNAEQAA 1148
>gi|402086030|gb|EJT80928.1| DNA mismatch repair protein msh6, variant [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 1235
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 238/479 (49%), Gaps = 64/479 (13%)
Query: 215 QDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQ 274
+DS K E++ ++ WL + IRD + +P+D ++ T+YIPP A K S +
Sbjct: 285 KDSKPHTKKSEQD----DRYVWL--ASIRDMDGNKPEDAEFNPATIYIPPSAWKNFSPFE 338
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
KQYW +K + D ++FFK GKFYELYE DA IGH+ D K+T R VG+ ES ++
Sbjct: 339 KQYWEIKQKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLE 396
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTN--------------SVISRKLVNVVTPST 380
V + VA+GYKV R++Q+E++ + R + +I R+L ++T T
Sbjct: 397 MWVNQFVAKGYKVARVDQMESALGKEMRERDDPGAKKAKGAAKADKIIRRELACILTGGT 456
Query: 381 TVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
V+G++ D A + +AIKE NG+ +G AFVD A + ++ DD L
Sbjct: 457 LVEGSMLQDDMATYCVAIKESTL---NGNPAFGIAFVDAATGQFFLSQFEDDVDLTRLET 513
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLN 497
+ Q P+E++ E L +A + L+ + + L P +F + + + +
Sbjct: 514 FVAQTCPRELLLEKARLSTKALRILKNNTTPTTIWNYLKPG---AEFPEPDAAVRDLDSS 570
Query: 498 GYFNGSS----------SPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDIL 546
GYF+ ++ W +ALE + SA+G L+ +L L L+ +L G
Sbjct: 571 GYFSKAAEGEAGDADQEEAWPEALEKSRDKSLLISAVGALVHYLRVLKLERSLLSQGSFE 630
Query: 547 PYK-VYRD-CLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPL 584
Y ++R+ L +DGQ+L L+ C+T GKRL R W+CHPL
Sbjct: 631 WYSPIHRNGTLILDGQSLINLEIFSNSVNGGPEGTLFSLLNRCITPFGKRLFRQWVCHPL 690
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIG 643
+ + IN RLD V+ L + + + + K+PDLERL+ R+ A V + V L G
Sbjct: 691 CNTQKINERLDAVDMLNADRSIREQFSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEG 749
Score = 202 bits (515), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 149/280 (53%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I IS +D L A +S RP+ + D+ VL+ L HP
Sbjct: 919 WIQAIRIISQLDCLICLAKASSSLGDPSCRPVFV----------DDERSVLEFGELRHPC 968
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L +PNDI LG D P LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 969 MLNTVDDF-IPNDIKLGGDE----PNINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPA 1023
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1024 RSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1083
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF HP + + M +G
Sbjct: 1084 DGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFEGHPEIRARRMQI-------QVDEGR 1136
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLYRL G S+G+ A M G+ +V+E A AA
Sbjct: 1137 RRVTFLYRLEDGVAEGSFGMHCAAMCGISGRVIERAEVAA 1176
>gi|344302169|gb|EGW32474.1| mismatch repair ATPase MSH6 [Spathaspora passalidarum NRRL Y-27907]
Length = 1223
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/433 (34%), Positives = 222/433 (51%), Gaps = 41/433 (9%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL I+DA +R PDDP YD RTLYIP A K +A +KQYW +KS+ ++FFK
Sbjct: 285 RYQWL--VNIKDAEKRTPDDPEYDSRTLYIPQAAWSKFTAFEKQYWEIKSKMWTTVVFFK 342
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I + E D KI G + GI E + ++ ++ GYKV +++Q
Sbjct: 343 KGKFYELYENDAIIANTEFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYKVAKVDQ 402
Query: 353 LETSEQAKAR----HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
E+ + R +I R+L ++T T D + D + + L+IKE D+G
Sbjct: 403 KESLLAKEMRGGSTKEEKIIKRELTGILTGGTLTDLDMISDDMSTYCLSIKEEE--KDDG 460
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
S ++G AFVD + + + + DD C L L+ QV PKE+I E LC A K L KF
Sbjct: 461 SKIFGVAFVDTSTSELNLIELEDDPECTKLDTLITQVKPKEIICEKGNLCGIANKIL-KF 519
Query: 467 SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS----SPWSKALENVMQ-HDIGF 521
A + +T+F D + + + Y+ S + L + + H + F
Sbjct: 520 CAHNNHQIWNQLNPITEFWDYDVTVENLVTSKYYPAEDLDDFSQYPVVLTSFKEKHQVAF 579
Query: 522 SALGGLISHLSRLMLD-DVLRNGDILPYKVYRD---CLRMDGQTL--------------- 562
+A GGL+ +L L LD ++ G+I Y++ R+ L +DG TL
Sbjct: 580 NAFGGLLYYLKTLKLDSSIMSLGNIHEYRISRNEASHLILDGITLNNLEILNNSTDGGDK 639
Query: 563 -----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVVAQYLRK 616
L+ T GKR L+ WI +PL + IN R D V+YLM + E+ +V L +
Sbjct: 640 GTLFKLLNRATTPFGKRQLKKWILYPLMKINEINQRYDAVDYLMNDGLEIRSIVESCLNE 699
Query: 617 LPDLERLLGRVKA 629
LPDLERLL R+ A
Sbjct: 700 LPDLERLLARIHA 712
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 151/280 (53%), Gaps = 23/280 (8%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W +VI IS ID L + A SG + P P+ V D G + + L HP
Sbjct: 899 WMKVIATISKIDCLLALAKV----SGTIGYPSCRPK----FVDSDRG--YINFQELRHPC 948
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+ +PND++LG D P LLTG N GKSTL+R T LAVIL+Q+GC++P
Sbjct: 949 FISTREF--IPNDVMLGGDQ----PHFGLLTGANAAGKSTLMRTTALAVILSQIGCYIPA 1002
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ L+ D I TRLGA D I+ G+STF VE +ET +L AT SLVILDELGRG S+
Sbjct: 1003 QSAELTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSS 1062
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG+AIA AV L + FATHY L F +HP + M SN+ N
Sbjct: 1063 DGFAIAEAVLYHLATHLQSLGFFATHYGTLGASFKTHPQIKPLRMGIIVDSNTRN----- 1117
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY+L GA S+G+ VA M G+ ++V A AA
Sbjct: 1118 --ITFLYKLEEGAASGSFGMNVASMCGISDEIVVNAEMAA 1155
>gi|402086031|gb|EJT80929.1| DNA mismatch repair protein msh6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1236
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 238/479 (49%), Gaps = 64/479 (13%)
Query: 215 QDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQ 274
+DS K E++ ++ WL + IRD + +P+D ++ T+YIPP A K S +
Sbjct: 286 KDSKPHTKKSEQD----DRYVWL--ASIRDMDGNKPEDAEFNPATIYIPPSAWKNFSPFE 339
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
KQYW +K + D ++FFK GKFYELYE DA IGH+ D K+T R VG+ ES ++
Sbjct: 340 KQYWEIKQKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLE 397
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTN--------------SVISRKLVNVVTPST 380
V + VA+GYKV R++Q+E++ + R + +I R+L ++T T
Sbjct: 398 MWVNQFVAKGYKVARVDQMESALGKEMRERDDPGAKKAKGAAKADKIIRRELACILTGGT 457
Query: 381 TVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
V+G++ D A + +AIKE NG+ +G AFVD A + ++ DD L
Sbjct: 458 LVEGSMLQDDMATYCVAIKESTL---NGNPAFGIAFVDAATGQFFLSQFEDDVDLTRLET 514
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLN 497
+ Q P+E++ E L +A + L+ + + L P +F + + + +
Sbjct: 515 FVAQTCPRELLLEKARLSTKALRILKNNTTPTTIWNYLKPG---AEFPEPDAAVRDLDSS 571
Query: 498 GYFNGSS----------SPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDIL 546
GYF+ ++ W +ALE + SA+G L+ +L L L+ +L G
Sbjct: 572 GYFSKAAEGEAGDADQEEAWPEALEKSRDKSLLISAVGALVHYLRVLKLERSLLSQGSFE 631
Query: 547 PYK-VYRD-CLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPL 584
Y ++R+ L +DGQ+L L+ C+T GKRL R W+CHPL
Sbjct: 632 WYSPIHRNGTLILDGQSLINLEIFSNSVNGGPEGTLFSLLNRCITPFGKRLFRQWVCHPL 691
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIG 643
+ + IN RLD V+ L + + + + K+PDLERL+ R+ A V + V L G
Sbjct: 692 CNTQKINERLDAVDMLNADRSIREQFSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEG 750
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 149/280 (53%), Gaps = 22/280 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + I IS +D L A +S RP+ + D+ VL+ L HP
Sbjct: 920 WIQAIRIISQLDCLICLAKASSSLGDPSCRPVFV----------DDERSVLEFGELRHPC 969
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L +PNDI LG D P LLTG N GKST+LR +C+AVI+AQ+GC+VP
Sbjct: 970 MLNTVDDF-IPNDIKLGGDE----PNINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPA 1024
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS++
Sbjct: 1025 RSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSY 1084
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG A+A AV + I C FATHYH L EF HP + + M +G
Sbjct: 1085 DGVAVAQAVLHHVASHIGCVGFFATHYHSLATEFEGHPEIRARRMQI-------QVDEGR 1137
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + FLYRL G S+G+ A M G+ +V+E A AA
Sbjct: 1138 RRVTFLYRLEDGVAEGSFGMHCAAMCGISGRVIERAEVAA 1177
>gi|337743319|gb|AEI73156.1| MSH6 [Kryptolebias marmoratus]
Length = 222
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
G D + +L+TGPNMGGKSTL+R L +ILAQLGC+VP E + D +FTRLG
Sbjct: 4 GSDEVEGCASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLG 63
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
A+DRIM GESTF VE +ETAS+L AT+ SLV+LDELGRGT+T+DG AIA AV ++L E
Sbjct: 64 ASDRIMAGESTFYVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEE 123
Query: 937 INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
I CR LF+THYH L +++A++P V L HMAC ++ E+ S+ + + FLY+ +GACP+
Sbjct: 124 ICCRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQ--ETITFLYKFITGACPK 181
Query: 997 SYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
SYG A +A +P++V+++ A +KS
Sbjct: 182 SYGFNAARLANLPEEVIQSGHRKAGEFEKS 211
>gi|167384705|ref|XP_001737066.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900342|gb|EDR26686.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 934
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 149/232 (64%), Gaps = 13/232 (5%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P K L HP+ +P++I+LG P+T++LTGPNMGGKSTLLR CLA
Sbjct: 685 PYFNAKQLKHPYLTVSTKTNAIPSNIILGGTD----PQTIILTGPNMGGKSTLLRTVCLA 740
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQ+G E +S+ D IFTR+GA+D I+ G STF+VE ETA +L ATQDSLV
Sbjct: 741 VIMAQMGMRCTGEEITMSVVDHIFTRIGASDDILHGMSTFMVELDETAQMLHDATQDSLV 800
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDELGRGTST DG AIA+AV V +I ++ +THYH L +EF V L HM C
Sbjct: 801 VLDELGRGTSTHDGLAIAHAVVEYTVSKIKPLMIVSTHYHQLCEEFEERGDVKLSHMGCT 860
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++N +++FLY L GACP+SYG++VA MAG+P K+V A + A
Sbjct: 861 IQNN---------QIIFLYTLLDGACPKSYGMKVAEMAGLPTKIVHRAENIA 903
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 132/464 (28%), Positives = 228/464 (49%), Gaps = 61/464 (13%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I+D N++ + YD TL+IP L KM+ +KQYWN+K DV++FF GKFYELYE
Sbjct: 41 IKDKNQKSIGEQGYDPSTLFIPASCLMKMTPFEKQYWNIKKDNYDVVVFFAKGKFYELYE 100
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA+IG+KEL KIT R G+ ++ + KL+ GYKVG +++ ETSE++K
Sbjct: 101 NDADIGNKELGLKIT--NRVNMRMAGVPKASFNTYASKLLELGYKVGCVDEKETSEESKK 158
Query: 362 RHTN---------SVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGF 412
R +++ R+L + T ST + + D + + + G D G V YG
Sbjct: 159 RGATIIVNGKREPNIVRRELTRIYTVSTATEPELCSDTSDMFCMAIVSNGCDVG-VCYG- 216
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
D + RV++G + D +L LL +V PKE++ N S +
Sbjct: 217 ---DASVGRVFLGYLEDTELHNSLHTLLHRVHPKEILLLN-----------------SIS 256
Query: 473 LELTPAMAVTDFLDASEVKKLVQLNG----YFNGSSSPWSKALENVMQHDIGFSALGGLI 528
++ F + + VK+ ++G + N P K +E +D +A L
Sbjct: 257 DDIAHICKNLKFAEITYVKEPEDISGVLPLFANRGRVP--KVIEKYSTNDQVMTAFTILY 314
Query: 529 SHLSRLML-DDVLRNGDILPYKVY-RDCLRMDGQTL-------------------YLDSC 567
++ + L++ ++ NG Y +D L +D Q++ ++D+C
Sbjct: 315 NYFTTLLIPKTIIINGTFGEYTTLSQDYLIVDAQSIVNLALFASKGKEVEGTLLHFVDNC 374
Query: 568 VTSSGKRLLRS-WICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
T+ GKR+LR ++ PL DV I +R +VVE+ ++N++++ + +LR +PDLERLL +
Sbjct: 375 FTAFGKRMLRERFLLKPLMDVNKILHRQEVVEFFLENNDLIDQIGTFLRVIPDLERLLSQ 434
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
+ S + + G + ++ + ++VK + + ++L
Sbjct: 435 CTSLTITESNFIRMVSGFETCQKLINELKAIVKDMPEVLQTIVL 478
>gi|121707076|ref|XP_001271724.1| DNA mismatch repair protein Msh6, putative [Aspergillus clavatus
NRRL 1]
gi|119399872|gb|EAW10298.1| DNA mismatch repair protein Msh6, putative [Aspergillus clavatus
NRRL 1]
Length = 1212
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 217/436 (49%), Gaps = 49/436 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + P+ P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 281 RYPWL--ANIRDMDGHPPNHPDYDPRTIYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFK 338
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 339 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 396
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
E++ + R + +I R+L V+T T V+G++ D + + +AIKE
Sbjct: 397 SESALGKEMRERDGKKAGGKEDKIIKRELSCVLTAGTLVEGSMLQDDMSTYCVAIKEAII 456
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+G AFVD A + + DDA + Q P+E++ E + +A +
Sbjct: 457 ---EDHPAFGIAFVDTATGQFSLSEFGDDADMTKFETFVAQTRPQELLLEKSTISTKALR 513
Query: 462 ALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQ 516
L+ + + L P +F +A K + + YF + + W + L
Sbjct: 514 ILKNNTGPTTIWNHLKPG---KEFWEADITVKELDASDYFVSQDDDNLQAWPETLREARA 570
Query: 517 HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----------- 562
++ SA G L+ +L L LD D++ G+ Y R L +DGQTL
Sbjct: 571 KELAMSAFGALVQYLRMLKLDRDLITIGNFSWYDPIRKTSNLVLDGQTLINMEIFANSFD 630
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S + +
Sbjct: 631 GGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARLDAVDALNADSSIRDQFSSQ 690
Query: 614 LRKLPDLERLLGRVKA 629
L K+PDLERL+ R+ A
Sbjct: 691 LTKMPDLERLISRIHA 706
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 157/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E + W + +S +D L S A +S RP+ + ++G VL+
Sbjct: 885 FDEHYTTWLAAVRIVSQLDCLISLAKASSSLGHPSCRPVFV----------EDGRSVLEF 934
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PND+ LG + P LLTG N GKST+LR +C+AVI+AQ
Sbjct: 935 EELRHPCLLSSVEDF-IPNDVRLGGER----PNINLLTGANAAGKSTVLRMSCVAVIMAQ 989
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 990 IGCYLPCKSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1049
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP +T + M
Sbjct: 1050 GRGTSSYDGVAVAQAVLHHISSHIGAMGFFATHYHSLAAEFEGHPEITPKRMRI------ 1103
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P K++E A AA
Sbjct: 1104 -HVDDQERRITFLYKLEDGVAEGSFGMHCASMCGIPNKIIERAEVAA 1149
>gi|24664545|ref|NP_648755.1| Msh6 [Drosophila melanogaster]
gi|13124364|sp|Q9VUM0.2|MSH6_DROME RecName: Full=Probable DNA mismatch repair protein Msh6
gi|10727920|gb|AAF49656.2| Msh6 [Drosophila melanogaster]
gi|211938707|gb|ACJ13250.1| LD20722p [Drosophila melanogaster]
Length = 1190
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 177/303 (58%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL S A A +++ P + D P
Sbjct: 872 LFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQ-------MVICV---PELVSDADQP 921
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++++ +HP A N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 922 FIQLEEGYHPCA---NASTYIPNGLELGTASEAPLS---LLTGPNMGGKSTLMREVGLLV 975
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 976 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1035
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + +TL HMAC
Sbjct: 1036 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMV 1094
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1095 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQ 1153
Query: 1025 KSI 1027
+ I
Sbjct: 1154 RKI 1156
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 160/549 (29%), Positives = 233/549 (42%), Gaps = 89/549 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 224 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 283
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA++G EL + G+ G E D LV RG+KV R+EQ
Sbjct: 284 VGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILVDRGFKVARVEQ 340
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAI---K 397
ET + + KA + V++R++ + T V G+ IGP+ ++LAI
Sbjct: 341 TETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEKD 400
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
EG C YG F+D + +G DD +C+ L L+ P + E L +
Sbjct: 401 EGTCS------RYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSALSQ 454
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS---KALENV 514
Q+ +R G E P +K L + GS W + +++
Sbjct: 455 RTQQIVRTV-LGGILKEPVPGNGKHACSAEKTLKLLAERYYAGPGSDDNWPLVLRTMQSD 513
Query: 515 MQH---------DIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY----------- 551
M H + ALG I + + L+ +LP Y++Y
Sbjct: 514 MDHLGLTPNDNYKLALKALGQCIFFIHKCKLE-----PKVLPMARYQLYVPPDQLADAKP 568
Query: 552 -------RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
R + +D TL LD C T GKRLL W+C P DV I
Sbjct: 569 AVASTLRRSHMVLDATTLSNLRIIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVI 628
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG--------RVKARVQASSCIVLPLI 642
R D + L++ + V L +PD ER L ++K S +L
Sbjct: 629 KERQDAIGELIRMPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQMDHPDSRAIL-FE 687
Query: 643 GKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLT 701
K KQ+++ F +++KG L + H+ + L RI + P GS L K L
Sbjct: 688 EKLYNKQKLQGFMAVLKGFNDLTKLPTMFHQCKTTL--LKRITQLPESGGSFPDLSKELQ 745
Query: 702 QFEAAIDSD 710
F A D D
Sbjct: 746 YFATAFDHD 754
>gi|195378902|ref|XP_002048220.1| GJ11467 [Drosophila virilis]
gi|194155378|gb|EDW70562.1| GJ11467 [Drosophila virilis]
Length = 1192
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 174/303 (57%), Gaps = 22/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL + A A L+ Q P + + G
Sbjct: 873 LFEKFSNHYQQWKQCIDCVATLDVLAALAEYARQQLVICVPELVSAQQAQPFIELEEG-- 930
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP A N +PN + LG +S+ L LLTGPNMGGKSTL+R L V
Sbjct: 931 -------YHPCA---NPSTYIPNGLQLGTNSEAPLS---LLTGPNMGGKSTLMRQVGLLV 977
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT +SLV+
Sbjct: 978 IMAQIGAHIPAVSCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCNSLVL 1037
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + +TL HMAC
Sbjct: 1038 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHTDKRITLGHMACMV 1096
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+P +++ A A+A++
Sbjct: 1097 E-NEDNTDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPHGIIKRAYELSKKVEAIALQ 1155
Query: 1025 KSI 1027
+ I
Sbjct: 1156 RKI 1158
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 161/552 (29%), Positives = 243/552 (44%), Gaps = 87/552 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K ++L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 223 KLDFLQPDKIKDKAGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWILKSDNFDCVLFFK 282
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY DA++G EL + G+ G E D L+ RGYKV R+EQ
Sbjct: 283 VGKFYELYHGDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSSILIDRGYKVARVEQ 339
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + KA + V++R++ + T V G+ IGP+ ++LAI E +
Sbjct: 340 TETPDMMTERCKRIKATKFDKVVAREICQITDRGTQVFGSQCAIGPNHQPNYMLAIVEQD 399
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G S YG F+D + VG +DD SC+ L L+ P +++E L Q
Sbjct: 400 AG---TSSKYGICFIDTSIGDFHVGEFDDDKSCSRLLTLISHHMPVLLLHEKSALSSRTQ 456
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWSKALENVMQHD- 518
+ LR G +L A A + KL+ Y NG+ W L MQ D
Sbjct: 457 QILRTVLGGILKEQLPSAG--NQVCSAEKTLKLLAERYYAGNGTEDNWPLVL-RTMQSDT 513
Query: 519 ------------IGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY------------ 551
+ ALG I ++++ L+ +LP Y++Y
Sbjct: 514 DHLGLTPADPYKLALKALGQCIHYIAKCKLEP-----KVLPMARYQLYVPPDQEQEANTK 568
Query: 552 --------RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEG 589
R + +D TL LD C T GKRLL W+C P D+
Sbjct: 569 QPLAATLRRSHMVLDATTLSNLRIVGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDLIV 628
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK-------ARVQASSCIVLPLI 642
+ R + + L++ + + + L +PD ER L ++ A+ + +
Sbjct: 629 LRERQEAIGELLRQPDELQQLRALLAPMPDFERHLAQIHLFGSKRIAQTEHPDSRAILFE 688
Query: 643 GKKVLKQQVKVFGSLVKGLRIAMDL-LMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLT 701
K KQ+++ F S++KG M L +M E ++ L+++ PP L K L
Sbjct: 689 EKLYNKQKLRSFMSILKGFETLMKLPVMFQTCETKLMQRLTQL--PPNGGSYPDLSKQLK 746
Query: 702 QFEAAIDSDFPD 713
FE A D + D
Sbjct: 747 FFENAFDHEAAD 758
>gi|156057209|ref|XP_001594528.1| hypothetical protein SS1G_04335 [Sclerotinia sclerotiorum 1980]
gi|154702121|gb|EDO01860.1| hypothetical protein SS1G_04335 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1246
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/471 (31%), Positives = 223/471 (47%), Gaps = 53/471 (11%)
Query: 207 SSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEA 266
SS R S K ++D ++EWL + RD +R P P YD RTLYIPP A
Sbjct: 279 SSSVPRTPNSSGKKFKEKASKSDPDQRYEWL--ANERDIDRNPPGHPDYDPRTLYIPPMA 336
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
K + +KQYW +K + D +LFFK GKFYELYE DA IGH+ D K+T V
Sbjct: 337 FNKFTPFEKQYWEIKQKCWDTILFFKKGKFYELYERDATIGHQIFDLKLT--DRVNMSMV 394
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETS-------------EQAKARHTNSVISRKLV 373
G+ E + + +A+GYKV +Q E++ +K + + +I R+L
Sbjct: 395 GVPEMSLQHWANQFLAKGYKVAVGDQKESALAKEMREREDSAGPSSKGKKPDKIIHRELS 454
Query: 374 NVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDA 431
++T T V+G++ D A + +AIKE D+ +G +FVD + + ++ DD
Sbjct: 455 YILTAGTLVEGSMLQDDSATYCVAIKESIT--DDNLPAFGISFVDTSTGQFFLSEFTDDV 512
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
+ Q+ P+E++ E + + + L+ + + + +FL A + +
Sbjct: 513 DLTKFETFVAQIRPQELLLEKSCVSTKVLRILKNNTGPTTVWNYL--KSEKEFLTAEKSR 570
Query: 492 KLVQLNGYF---NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILP 547
+ + GYF +G W + LE +D+ SA G L +L L L+ +L G+
Sbjct: 571 RELDYGGYFASGDGGKETWPEELEKARDNDLLISAFGALFQYLKVLQLEKALLTQGNFAW 630
Query: 548 YKVYRD--CLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLK 585
Y + L +DGQTL LD C T GKRL R W+ HPL
Sbjct: 631 YNPIQKGTTLVLDGQTLINLEIFSNTFDGNTDGTLYTLLDRCTTPFGKRLFRQWVSHPLS 690
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC 636
D++ IN RLD V+ L K+ + LPDLERL+ +R+ A SC
Sbjct: 691 DIKRINERLDAVDLLNKDDNLSRSFKSSTSTLPDLERLI----SRIHAGSC 737
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 165/301 (54%), Gaps = 24/301 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + + ++ +D L S A +S RP + D+ V++
Sbjct: 912 FDEDYEIWLQAVKTVAQLDCLFSLAAASSALGTPSCRPKFV----------DSERSVVEF 961
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PND+ LG S + LLTG N GKST+LR TC+AVI+AQ
Sbjct: 962 EELRHPCILPNVTDF-IPNDVQLGGKSANIN----LLTGANAAGKSTILRMTCVAVIMAQ 1016
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
LGC+VP + L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 1017 LGCYVPAKSATLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATSRSLVILDEL 1076
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG ++A AV + I C FATHYH L EF SHP V + MA S
Sbjct: 1077 GRGTSSYDGVSVAQAVLHHVASHIGCIGFFATHYHSLALEFDSHPEVINKRMAIEVDDES 1136
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS--IGESF 1031
+ ++FLY+L +G S+G+ A M G+P+KVV+ A AA + + +GES
Sbjct: 1137 -------RSVLFLYKLENGVAEGSFGMHCASMCGIPRKVVDRAEVAAREWEYTSRLGESL 1189
Query: 1032 K 1032
+
Sbjct: 1190 E 1190
>gi|119500868|ref|XP_001267191.1| DNA mismatch repair protein Msh6, putative [Neosartorya fischeri
NRRL 181]
gi|119415356|gb|EAW25294.1| DNA mismatch repair protein Msh6, putative [Neosartorya fischeri
NRRL 181]
Length = 1214
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 220/439 (50%), Gaps = 55/439 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + PD P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 284 RYPWL--ANIRDIDGHAPDHPDYDPRTIYIPPLAWAKFSPFEKQYWEIKQKFWDTVVFFK 341
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 342 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 399
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
E++ + R + +I R+L V+T T V+G++ D + + +AIKE
Sbjct: 400 SESALGKEMRERDGKKSGGKEDKIIKRELSCVLTAGTLVEGSMLQDDMSTYCVAIKEAII 459
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G AFVD A + + DD + Q P+E++ E + +QK
Sbjct: 460 ---DDRPAFGLAFVDTATGQFSLSEFVDDVDMTKFETFVAQTRPQELLLEKSTI---SQK 513
Query: 462 ALR--KFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALEN 513
ALR K + G + L P +F +A K + + YF + + W + L
Sbjct: 514 ALRILKNNTGPTTIWNHLKPG---KEFWEADITVKELDASEYFVSQDDDNLQAWPEPLRE 570
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
++ SA G L+ +L L LD D++ G+ Y R L +DGQTL
Sbjct: 571 ARDKELVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIRKASSLVLDGQTLINMEIFAN 630
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S V
Sbjct: 631 SFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARLDAVDALNADSSVRDQF 690
Query: 611 AQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ R+ A
Sbjct: 691 SSQLTKMPDLERLISRIHA 709
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 157/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E + W + IS +D L S A +S RP+ + ++ VL+
Sbjct: 888 FDENYTTWLAAVRIISQLDCLISLAKASSSLGHPSCRPVFVEDERS----------VLEF 937
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PND+ LG + +P LLTG N GKST+LR TC+AVI+AQ
Sbjct: 938 EELRHPCLLSSVEDF-IPNDVRLGGE----VPNINLLTGANAAGKSTVLRMTCIAVIMAQ 992
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 993 IGCYLPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1052
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP +T + M
Sbjct: 1053 GRGTSSYDGVAVAQAVLHHVATHIGAMGFFATHYHSLAAEFDGHPEITPKRMKI------ 1106
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1107 -HVDDEERRITFLYKLEDGVAEGSFGMHCASMCGIPNKVIERAEVAA 1152
>gi|115397903|ref|XP_001214543.1| DNA mismatch repair protein msh6 [Aspergillus terreus NIH2624]
gi|114192734|gb|EAU34434.1| DNA mismatch repair protein msh6 [Aspergillus terreus NIH2624]
Length = 1206
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 223/451 (49%), Gaps = 48/451 (10%)
Query: 217 SVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQ 276
S VK + ++ WL + IRD + P P YD RT+YIPP A K S +KQ
Sbjct: 264 SSGTVKQKAHVTEPEQRYPWL--ANIRDIDGHPPGHPDYDPRTIYIPPLAWSKFSPFEKQ 321
Query: 277 YWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDA 336
YW +K ++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E +D
Sbjct: 322 YWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHW 379
Query: 337 VEKLVARGYKVGRIEQLETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
+ VA+GYK+ R++Q E++ + K + VI R+L V+T T V+G++
Sbjct: 380 ANQFVAKGYKIARVDQAESALGKEMRERDGKKGGKEDKVIRRELSCVLTAGTLVEGSMLH 439
Query: 389 D--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
D + +AIKE + +G AFVD A + ++ + DDA + Q P+
Sbjct: 440 DDMSTFCVAIKEAII---DDHPAFGLAFVDTATGQFFMSELMDDADMTKFETFVAQTRPQ 496
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----N 501
E++ E + +A + L+ + + L P +F +A K + ++ YF +
Sbjct: 497 ELLLEKSTISPKALRILKNNTGPTTIWNYLKPG---KEFWEADITVKELDVSEYFVSEDD 553
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMD 558
+ W +AL ++ SA G L+ +L L LD D++ G+ Y + L +D
Sbjct: 554 DNLKAWPEALRVARDKELVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIKKASSLVLD 613
Query: 559 GQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
GQTL L+ C+T GKR+ + W+CHPL D + IN RLD V+
Sbjct: 614 GQTLINMEIFANSFDGGSDGTLFQLLNRCITPFGKRMFKQWVCHPLVDAKKINARLDAVD 673
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
L + V + L K+PDLERL+ RV A
Sbjct: 674 ALNADPSVRDQFSSQLTKMPDLERLISRVHA 704
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 154/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E + W + +S +D L S A ++ RP+ + D+ VL+
Sbjct: 882 FDEHYATWLAAVRIVSQLDCLISLAKASASLGQPSCRPVFV----------DDERSVLEF 931
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + +PNDI LG P LLTG N GKST+LR TC+AVI+AQ
Sbjct: 932 EELRHPCLVSSVDDF-IPNDIQLG----GVRPNIDLLTGANAAGKSTVLRMTCVAVIMAQ 986
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 987 IGCYLPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1046
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1047 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLATEFEGHPEIAPKRMKI------ 1100
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1101 -HVDDEERRITFLYKLEDGVAEGSFGMHCAAMCGIPDKVIERAEVAA 1146
>gi|170590105|ref|XP_001899813.1| MutS domain III family protein [Brugia malayi]
gi|158592732|gb|EDP31329.1| MutS domain III family protein [Brugia malayi]
Length = 1182
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/290 (43%), Positives = 169/290 (58%), Gaps = 24/290 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F +++++W+ + ++ DVL S M RP + SK P +L+I
Sbjct: 865 FGDRSTKWTMAVERMATFDVLLSLTRYGQDCGLNMCRPQFVYDSKQP---------ILEI 915
Query: 794 KGLWHP--FALGENGG--LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
K +HP A+ +G +PN +LLG + P +LLTGPNMGGKSTL+R + V
Sbjct: 916 KSGYHPSLAAMAASGSSFTYIPNSVLLGGNE----PPIILLTGPNMGGKSTLMRQVGVLV 971
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LAQ+G FVP LS D IFTR+GA DRI TG+STF VE ET +L+ AT+ SLVI
Sbjct: 972 VLAQIGSFVPANEMKLSPVDRIFTRMGAGDRITTGQSTFYVELYETNLILRNATKHSLVI 1031
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGTST+DG A+AYAV + R+NCR F+THYH L K + + HMAC
Sbjct: 1032 MDELGRGTSTYDGTAVAYAVLLDVATRLNCRTFFSTHYHTLCKAVENVTSIKAAHMACIV 1091
Query: 970 KSNSENYSKGD---QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
EN S D + + FLY L G CP+SYG A ++G+ +V+ AA
Sbjct: 1092 ----ENESAEDPTMENVTFLYTLADGMCPKSYGFFAAKISGLKAEVIRAA 1137
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 163/561 (29%), Positives = 249/561 (44%), Gaps = 103/561 (18%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
F++L P +IRDA++R P Y RTL++P +KK + +Q+W KS Y D +LFFKV
Sbjct: 194 FDFLQPDRIRDADKRLRSHPDYCPRTLFVPDAFMKKQTPGHRQWWAAKSAYFDTVLFFKV 253
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYE+Y +DA IG + L+ C G E ++LV RGYKV R+EQ
Sbjct: 254 GKFYEMYHMDAVIGVENLNLNYMRGSFAHC---GFPEVAYGRFADQLVNRGYKVARVEQT 310
Query: 354 ETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGTI-GPD-----------AVHLLAI 396
ET Q + R+ + V+ R++ N+ T T G + G D A +L AI
Sbjct: 311 ETPTQLENRNKSEKVNDRVVKREVCNITTSGTRXYGVLDGNDDENIIDVMDTTARYLYAI 370
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
E G +N V YG F+D R ++G ++D ++ +AL L P +++YE RG
Sbjct: 371 AER--GTEN--VEYGVCFIDTTVGRFYIGCLSDGSNRSALRTLFSHYQPAQILYE-RG-- 423
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
+ + L ++ A+ ++ +FL + KL+ + YF W L N++
Sbjct: 424 RVSALTLIIYNTTVNAVPKEALVSKKEFLTSESTLKLLSSDKYFGELYDKWPVVLLNMID 483
Query: 517 -----------HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYK------VYRDCLRMD 558
+D SALG +I +L R +D D++ YK V D D
Sbjct: 484 RDSLPLKCBPTYDACVSALGAIIWYLRRCFIDVDMVSMRRFELYKPLNLEGVLEDENESD 543
Query: 559 -----GQTLYLDS------------------------------------CVTSSGKRLLR 577
G+ L LDS C+T +GKRLLR
Sbjct: 544 EKYWSGRRLILDSLALKHLNIIPPISSMQKFTLCDPITAKYALYNVINKCITPAGKRLLR 603
Query: 578 SWICHPLKDVEGINNRLDVVEYLMKN--SEVVMVVAQYLRKLPDLERLLGRV-----KAR 630
WIC P+ D + + +R D +E+L K + + LRK+PDLERL+ ++ K R
Sbjct: 604 QWICAPVCDRKILCSRQDAIEWLSKARLKRFIDKAVELLRKVPDLERLIQKIHTLGLKYR 663
Query: 631 VQA-----SSCIVLPLIGKKVLKQQVKVFGSL--VKGLRIAMDLLMLMHKEGHIIPS-LS 682
+ + K+ ++ ++ V+ LRI + + K IPS L
Sbjct: 664 AEEHPDSRAQMFETMRYNKRKIRDLIRALEGFEHVQDLRI--EFMKHFGKSQETIPSLLE 721
Query: 683 RIFKPPIFDGSDGLDKFLTQF 703
R F D S+ L F + F
Sbjct: 722 RCFGYRFPDISEDLQHFKSAF 742
>gi|225679781|gb|EEH18065.1| DNA mismatch repair protein mutS [Paracoccidioides brasiliensis
Pb03]
Length = 1256
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 163/552 (29%), Positives = 257/552 (46%), Gaps = 83/552 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 324 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 381
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 382 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 439
Query: 353 LETSEQAKARHTN-----------SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ + R +I R+L V+T T VDG + D + + +AIKE
Sbjct: 440 SESALGKEMREKQGKTGGSVGKQEKIIRRELACVLTSGTLVDGGMLQDDMSTYCVAIKEA 499
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N V+G AFVD A + ++ DD + Q P+E++ E + +A
Sbjct: 500 LV---NDLPVFGIAFVDTATGQFYLAEFIDDVDMTKFETFVAQTRPQELLLEKSVMSTKA 556
Query: 460 QKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSS----PWSKALENV 514
+ L+ + + L P +F +A + + + YF W + L
Sbjct: 557 LRILKNNTIPTTLWNYLKPG---KEFWEADITVRELDASNYFVSPDGDNLLAWPQVLREA 613
Query: 515 MQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL--------- 562
+ SA G L+ +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 614 RDKEFAMSAFGALVQYLRMLKIERDLITIGNFTWYDPIRKATSLVLDGQTLINLEVFANS 673
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ CVT GKR+ + W+CHPL D + IN RLD V+ L ++ + +
Sbjct: 674 FDGGQEGTLFQLLNRCVTPFGKRMFKQWVCHPLVDTKKINARLDAVDALNADNAIRNQFS 733
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
L K+PDLERL+ +RV A SC + + F +++G +D M +
Sbjct: 734 SQLTKMPDLERLI----SRVHAGSC-------------KAQDFLRVLEGFE-QIDYTMGL 775
Query: 672 HKE--------GHIIPSLSRI-----FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
KE G ++ S+ + + FD S D + EA ++ DF D +
Sbjct: 776 LKETGSGEGVIGQLVSSMPDLSGHLKYWKTAFDRSKAKDSGILVPEAGVEEDF-DVSHDK 834
Query: 719 VTDLDAETLSIL 730
+T+++ E +L
Sbjct: 835 ITEIEYELDQLL 846
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + ++ +D L S A +S RP+ + + ++ +L+
Sbjct: 929 FDENYSTWLAAVKVVAQLDCLISLAKASSALGYPSCRPVFVDEERS----------ILEF 978
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L G +PND+ LG + P LLTG N GKST+LR TC AVI+AQ
Sbjct: 979 QELRHPCMLPNVGDF-IPNDVKLGGKA----PNINLLTGANAAGKSTILRMTCTAVIMAQ 1033
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC VPC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 1034 IGCHVPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1093
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1094 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPRRMRI------ 1147
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ + ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1148 -HVDEEERRVTFLYKLEEGVAEGSFGMHCASMCGIPNKVVERAEIAA 1193
>gi|347840481|emb|CCD55053.1| similar to DNA mismatch repair protein msh6 [Botryotinia
fuckeliana]
Length = 1213
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 150/487 (30%), Positives = 228/487 (46%), Gaps = 61/487 (12%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
DN+ K+SS+ R S K + D ++EWL + RD +R P
Sbjct: 237 DNIQPRQAKSSSI------SRTPNSSGKKFKEKASKTDPNQRYEWL--ANERDIDRNPPG 288
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
P YD RTL+IPP A + + QYW VK + D +LFFK GKFYELYE DA IGH+
Sbjct: 289 HPDYDPRTLFIPPMAFNNFTPFEAQYWKVKQKCWDTILFFKKGKFYELYERDATIGHQIF 348
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE-------------TSEQ 358
D K+T VG+ E + + +A+GYKV +Q E T
Sbjct: 349 DLKLT--DRVNMSMVGVPEMSLQHWANQFLAKGYKVAVGDQKESALAKEMREREDSTGPS 406
Query: 359 AKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVD 416
+K + ++ +I R+L ++T T V+G++ G A + +AIKE D + +G +FVD
Sbjct: 407 SKGKKSDKIIHRELSYILTAGTLVEGSMLQGDSATYCVAIKESTTNDDLPA--FGISFVD 464
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-L 475
+ + ++ DD + Q P+E++ E + + + L+ + + L
Sbjct: 465 TSTGQFFLTEFTDDVDLTKFETFVAQTRPQELLLEKSCVSTKVLRILKNNTGPTTIWNYL 524
Query: 476 TPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDIGFSALGGLISHLS 532
P +FL A + ++ + GYF +G W + LE D+ SA G L +L
Sbjct: 525 KPE---KEFLSAEKSRRELDYGGYFTSADGGKETWPEELEKARDKDLLISAFGALFQYLK 581
Query: 533 RLMLDD-VLRNGDILPYKVYRD--CLRMDGQTL--------------------YLDSCVT 569
L L+ +L G+ Y + L +DGQTL LD C T
Sbjct: 582 FLQLEKPLLTQGNFSWYNPIQKGTTLVLDGQTLINLEIFSNTFDGNSDGTLYTLLDRCTT 641
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
GKRL R W+ HPL D++ IN RLD V++L +++E+ +PDLERL+ +
Sbjct: 642 PFGKRLFRQWVSHPLSDIKRINERLDAVDFLNRDNELSRSFKSSTSAMPDLERLI----S 697
Query: 630 RVQASSC 636
R+ A SC
Sbjct: 698 RIHAGSC 704
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 166/310 (53%), Gaps = 24/310 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F E W + + ++ +D L S A +S RP +
Sbjct: 870 EVASRFYARFDEDYKTWLQAVKVVAQLDCLVSLAAASSALGTTSCRPKFV---------- 919
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ V++ + L HP L +PND+ LG S P LLTG N GKST+LR
Sbjct: 920 DSERSVVEFEELRHPCVLPNVTDF-IPNDVQLGGQS----PNINLLTGANAAGKSTILRM 974
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AVI+AQLGC+VP + L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 975 TCVAVIMAQLGCYVPAKSATLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 1034
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG ++A AV + I C FATHYH L EF SHP V +
Sbjct: 1035 RSLVILDELGRGTSSYDGVSVAQAVLHHVASHIGCIGFFATHYHSLALEFDSHPEVINKR 1094
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA--LA 1022
MA + S + ++FLY+L +G S+G+ A M G+P+KVV+ A AA
Sbjct: 1095 MAIEVDNES-------RSVLFLYKLENGVAEGSFGMHCASMCGIPRKVVDRAEVAAREWE 1147
Query: 1023 MKKSIGESFK 1032
+GES +
Sbjct: 1148 FTSRLGESLE 1157
>gi|347969433|ref|XP_312887.5| AGAP003190-PA [Anopheles gambiae str. PEST]
gi|333468522|gb|EAA08481.5| AGAP003190-PA [Anopheles gambiae str. PEST]
Length = 1290
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/296 (42%), Positives = 173/296 (58%), Gaps = 11/296 (3%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F W I ++ +DVL S A A + G P++L SK+ + G
Sbjct: 974 IFERFSRDYDMWKGCIELVATLDVLTSLAEYAR-TEGLSCVPVLL--SKDETI---GGKS 1027
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++I+ HP E +PN +G D L +LLTGPNMGGKSTL+R L
Sbjct: 1028 FIEIEEGIHPCLSSEAAENFIPNGTAIGGDGKANL---VLLTGPNMGGKSTLMRQVGLLA 1084
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+L+Q+G +P E C ++L D IFTRLGA+D IM G STFLVE ET+++L+ AT DSLV+
Sbjct: 1085 VLSQIGSRLPAEACRMTLIDRIFTRLGASDDIMAGHSTFLVELNETSAILKHATADSLVL 1144
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG A+A AV L + + CR +F+THYH L F P + L HMAC
Sbjct: 1145 LDELGRGTATYDGTAVAGAVVHFLAD-LKCRTMFSTHYHNLVDSFHEDPRIALGHMACMV 1203
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+ N E + + FLYR T GACP+SYG A +AG+P +++ A + ++K
Sbjct: 1204 E-NEEGDDPTQETVTFLYRYTDGACPKSYGFNAAKLAGMPTAIIKRAYELSKTVEK 1258
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 202/461 (43%), Gaps = 71/461 (15%)
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
T K ++L P+KI+D + RP YD RTL++P L ++ + +Q+W +KS+ D +L
Sbjct: 316 THQKLDFLKPNKIKDIHGNRPGSEKYDNRTLFVPDSYLNTLTPAMRQWWILKSKNFDCVL 375
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
FFKVGKFYELY +DAE+G EL + G+ G E+ D LV +GYKV R
Sbjct: 376 FFKVGKFYELYHMDAEVGVTELGFSFM---KGEFAHSGFPEAAYDRMSTTLVEKGYKVAR 432
Query: 350 IEQLET----SEQAKARHTNS----VISRKLVNVVTPSTTVDG-----TIGPDAVHLLAI 396
+EQ ET E+ K T S V+ R++ + T V G T ++LAI
Sbjct: 433 VEQTETPDMMQERCKVERTTSKYDKVVRREICQITVMGTEVFGQQVTITANHQPRYMLAI 492
Query: 397 KE-GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
E G G YG F+D + +G DD + L L P V++E
Sbjct: 493 TESGRQG--TAGCRYGVCFIDTSIGLFHLGEFEDDNQQSRLLTFLSHYPPVLVLHERATP 550
Query: 456 CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS--SPWSKALEN 513
+ Q+ + A LT A T + K + Y SS S W L
Sbjct: 551 SEGMQRIFKTLLANVKREALT---AGTQLWTGEKTLKYLAETVYGGSSSEGSKWPATLRT 607
Query: 514 VM------------QHDIGFSALGGLISHLSRLMLDDVLRN----GDILPYKVYRDC--- 554
++ + + ALGG + +L R +LD + + + +P +R+
Sbjct: 608 MLDETDSLGLTPKESYQLALKALGGCVWYLQRCLLDQQVLSLATFEEYVPLDEHRETTET 667
Query: 555 --------------LRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKD 586
+ +D TL +D C + GKRLL +W+C P
Sbjct: 668 IAKRIDDAARAKRFMVLDSITLNNLKIVGSEGSLVDRMDHCCSKFGKRLLYNWVCAPSCI 727
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
E I R + V L++N +++ V Q L +LPD+ER L ++
Sbjct: 728 KEEILQRQEAVTELIENVDLLQDVRQILGQLPDMERHLAQI 768
>gi|358366152|dbj|GAA82773.1| DNA mismatch repair protein Msh6 [Aspergillus kawachii IFO 4308]
Length = 1210
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 220/437 (50%), Gaps = 51/437 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + P YD RTLYIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 279 RYAWL--ANIRDIDGHPIGHPEYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 336
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 337 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 394
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
+E++ + R + VI R+L +V+T T V+G++ D + + +AIKE
Sbjct: 395 IESALGKEMRERDGKKGGGKEDKVIRRELSSVLTAGTLVEGSMLQDDMSTYCVAIKEALI 454
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G AFVD A + ++ DD + Q P+E++ E + ++A +
Sbjct: 455 ---DDKPAFGIAFVDTATGQFFLSEFVDDVDMTKFETFVAQTRPQELLLEKSAVSQKAMR 511
Query: 462 ALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVM 515
L K + G L L P V +F +A K + + YF + + W +AL
Sbjct: 512 IL-KNNTGPTTLWNHLKP---VKEFWEADITVKELDASEYFVSQDDDNLQAWPEALREAR 567
Query: 516 QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL---------- 562
++ SA G L+ +L L +D D++ G+ Y + L +DGQTL
Sbjct: 568 DKELVMSAFGALVQYLRLLKIDRDLITIGNFTAYDPIKKATSLVLDGQTLINMEIFSNSF 627
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
L+ C+T GKR+ + W+CHPL D IN RLD V+ L + V +
Sbjct: 628 DGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDANKINARLDAVDALNADPTVRDQFSS 687
Query: 613 YLRKLPDLERLLGRVKA 629
L K+PDLERL+ RV A
Sbjct: 688 QLTKMPDLERLISRVHA 704
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 197/402 (49%), Gaps = 49/402 (12%)
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII 678
DLE LL RV+ + SS I+ GK++ + +V + VK + D + +
Sbjct: 795 DLESLLKRVRKEL-GSSAIIYKDNGKEIYQLEVPI---KVKNIPKNWDQMSATKQ----- 845
Query: 679 PSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKA 738
+ R + P L K + Q + A ++ + + E F E
Sbjct: 846 --VKRYYFPE-------LRKLIRQLQEAQETH---------SQIVKEVAGRFYARFDENY 887
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W + ++ +D L S A +S RP+ + D+ VL+ + L H
Sbjct: 888 TTWLAAVRIVAQLDCLISLAKASSSLGQPSCRPVFV----------DDERSVLEFEELRH 937
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
P + G +PND+ LG + LLTG N GKST+LR TC+AVI+AQ+GC++
Sbjct: 938 PCLISSVGDF-IPNDVQLGGTHANID----LLTGANAAGKSTVLRMTCVAVIMAQIGCYL 992
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS
Sbjct: 993 PCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTS 1052
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
++DG A+A AV + I FATHYH L EF HP + + M +
Sbjct: 1053 SYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPKRMRI-------HVDD 1105
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1106 EERRVTFLYKLEDGVAEGSFGMHCAAMCGIPDKVIERAEVAA 1147
>gi|392866476|gb|EAS27907.2| DNA mismatch repair protein msh6 [Coccidioides immitis RS]
Length = 1221
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 160/541 (29%), Positives = 265/541 (48%), Gaps = 66/541 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D ++ P P YD RTLYIPP A + S +KQYW +K ++ D ++FFK
Sbjct: 298 RYPWL--ANILDMDKNPPGHPDYDPRTLYIPPLAWSRFSPFEKQYWEIKQKFWDTVVFFK 355
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES ++ + VA+G+K+ R++Q
Sbjct: 356 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLEYWANQFVAKGFKIARVDQ 413
Query: 353 LETS------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPD 404
E++ E+ + + VI R+L V+T T VDG + D + + +A+KE
Sbjct: 414 SESALGKEMRERDDKKKGDKVIKRELSCVLTAGTLVDGAMLQDDMSTYCVAVKEALV--- 470
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+ +G +FVD A + ++ DD L+ Q P+E++ E + +A + L+
Sbjct: 471 DDLPAFGVSFVDTATGQFFLTEFTDDVDMTKFETLVAQTRPQELLLEKGFMSPKALRILK 530
Query: 465 KFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQHDI 519
+ + L P +F DAS ++ + + YF + W + L +++
Sbjct: 531 NNTNPTTIWNYLKPER---EFWDASTTRRELDASEYFVSVDQDNIEAWPEVLRQARDNEL 587
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------------- 562
S+ G LI +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 588 VISSFGALIQYLRMLKIERDLITIGNFTWYDPIRKASSLVLDGQTLINLEVFANSYDGGQ 647
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S + + L K
Sbjct: 648 DGTLFQLLNRCITPFGKRMFKQWVCHPLMDSKKINARLDAVDALNADSSIRDQFSSQLTK 707
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVKGLRIAMDLLMLMHKE 674
+PDLERL+ +RV A +C + +VL+ +Q+ SL+K ++
Sbjct: 708 MPDLERLI----SRVHAGTCKCQDFV--RVLEGFEQIDYTMSLLKQTGSGDGVI------ 755
Query: 675 GHIIPSLSRI-----FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSI 729
GH+I S+ + + FD D + +A ++ DF D + +++A+ +
Sbjct: 756 GHLISSMPDMDGLLQYWKTAFDRVKAKDSGIFVPKAGVEEDF-DASTQRIEEIEAKLDQL 814
Query: 730 L 730
L
Sbjct: 815 L 815
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F E W + + +D L A ++ RP+ +
Sbjct: 889 EVTSRFYARFDENYQTWLAAVKITARLDCLIGLAKASTAIGYPSCRPVFV---------- 938
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ VL+ + L HP L G +PND+ LG ++ LLTG N GKST+LR
Sbjct: 939 DSDRSVLEFQELRHPCMLATVGDF-IPNDVKLGGNTASIN----LLTGANAAGKSTVLRM 993
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC AVI+AQ+GC+VPC L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 994 TCTAVIMAQIGCYVPCASARLTPVDRIMSRLGANDNIFGAQSTFFVELSETKKILSEATS 1053
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I FATHYH L EF HP ++ +
Sbjct: 1054 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEISPRR 1113
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + D+ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1114 MRI-------HVDEEDRRVTFLYKLEDGVAEGSFGMHCASMCGIPTKVIETAEVAA 1162
>gi|159125092|gb|EDP50209.1| DNA mismatch repair protein Msh6, putative [Aspergillus fumigatus
A1163]
Length = 1213
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 219/439 (49%), Gaps = 55/439 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD PD P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 283 RYPWL--ANIRDIEGHPPDHPDYDPRTIYIPPLAWAKFSPFEKQYWEIKQKFWDTIVFFK 340
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 341 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 398
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
E++ + R + +I R+L V+T T V+G++ D + + +AIKE
Sbjct: 399 SESALGKEMRERDGKKAGGKEDKIIKRELSCVLTAGTLVEGSMLQDDMSTYCVAIKEAIV 458
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G AFVD A + + DD + Q P+E++ E + +QK
Sbjct: 459 ---DDRPAFGLAFVDTATGQFSLSEFVDDVDMTKFETFVAQTRPQELLLEKSTI---SQK 512
Query: 462 ALR--KFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALEN 513
ALR K + G + L P +F +A K + + YF + + W + L
Sbjct: 513 ALRILKNNTGPTTIWNHLKPG---KEFWEADITVKELDASEYFVSQDDDNLQAWPETLRE 569
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
++ SA G L+ +L L LD D++ G+ Y R L +DGQTL
Sbjct: 570 ARDKELVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIRKASSLVLDGQTLINMEIFAN 629
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S V
Sbjct: 630 SFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARLDAVDALNADSSVRDQF 689
Query: 611 AQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ R+ A
Sbjct: 690 SSQLTKMPDLERLISRIHA 708
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E + W + IS +D L S A +S RP+ + ++ VL+
Sbjct: 887 FDENYTTWLAAVRIISQLDCLISLAKASSSLGHPSCRPVFVEDERS----------VLEF 936
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PND+ LG + +P LLTG N GKST+LR TC+AVI+AQ
Sbjct: 937 EELRHPCLLSSVEDF-IPNDVRLGGE----VPNINLLTGANAAGKSTVLRMTCIAVIMAQ 991
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 992 IGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1051
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP +T + M
Sbjct: 1052 GRGTSSYDGVAVAQAVLHHVATHIGAMGFFATHYHSLAAEFDGHPEITPKRMKI------ 1105
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1106 -HVDDEERRITFLYKLEDGVAEGSFGMHCASMCGIPNKVIERAEVAA 1151
>gi|307206242|gb|EFN84313.1| Probable DNA mismatch repair protein Msh6 [Harpegnathos saltator]
Length = 1135
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 131/310 (42%), Positives = 180/310 (58%), Gaps = 25/310 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W ++ ++ +DVL S A A +G M P I S +G ++I
Sbjct: 827 FSENYDTWHMAVYKLATMDVLISLADYAR--NGDMCVPEIHDGS--------DGEIFVEI 876
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ HP +N +PND LL D ++LTGPNMGGKSTL+R L I+AQ
Sbjct: 877 RDGKHPCITSDNF---IPNDTLLATDDAASF---MILTGPNMGGKSTLMRQVGLITIMAQ 930
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
LG +VP +C ++L D IFTRLGA D I+ G+STFLVE +ETA++LQ T SLV+LDEL
Sbjct: 931 LGSYVPASLCRVTLVDRIFTRLGANDDILAGQSTFLVELSETATILQHVTPYSLVLLDEL 990
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG AIA +V L ++ CR LF+THYH L +++ ++ VTL HMAC
Sbjct: 991 GRGTSTYDGTAIAASVVDALT-KLKCRTLFSTHYHSLVEDYKTNKEVTLAHMAC-MVETE 1048
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
E + + FLY+L+ GACP+SYG A +AGVP + + A A M+ +
Sbjct: 1049 EEEEVSQETVTFLYKLSEGACPKSYGFNAARLAGVPSVITKRAHEIASRME-------QE 1101
Query: 1034 SEQRSEFSSL 1043
+ Q+ FS+L
Sbjct: 1102 TNQKHIFSAL 1111
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 139/454 (30%), Positives = 202/454 (44%), Gaps = 64/454 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K ++L P KI+D RR P D YD +T+Y+P + L + + +Q+W +KS++ D +LFFK
Sbjct: 180 KLDFLQPEKIKDIKRRTPIDCDYDSKTVYVPHDFLLNQTPAMRQWWELKSKHFDCVLFFK 239
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA IG EL G+ G E G L+ RGYKV R+EQ
Sbjct: 240 VGKFYELYHMDAVIGVNELSLTYMR---GEFAHSGFPEIGYGRYSASLIERGYKVARVEQ 296
Query: 353 LETSEQAKAR---------HTNSVISRKLVNVVTPSTTVDGTIG-----PDAVHLLAIKE 398
E E AR + V+ R++ V T T V + P++ +LLA+ E
Sbjct: 297 TENPEMMTARCNKMSGKPTKFDKVVKREICQVSTRGTRVYTPLDVEASTPNSNYLLALVE 356
Query: 399 GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
C D+ S +G F+D +G +DD + L +L P +I+E L
Sbjct: 357 -KCNFDSTS-SFGVCFIDTTIGEFHLGQFDDDRCNSRLLTMLAHHPPVHIIHERGNL--- 411
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVM 515
+ K L+ ++ A P F A+ K + YF N SS W + L+ +
Sbjct: 412 SPKTLQIINSTLPAALKEPLQREAQFWSATTALKKLHEEDYFKKENDSSFAWPEGLKPYL 471
Query: 516 QH------------DIGFSALGGLISHLSRLMLDD-VLRNGDILPY----------KV-- 550
++ ALGG + L +L+ +L G Y +V
Sbjct: 472 NEGDSLGLTPADNKELAVHALGGCVYLLKEYLLEQRLLAQGCFNTYCPPDFSAASNRVGL 531
Query: 551 -YRDCLRMDGQTL-------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
Y + + +D T+ LD C T+ GKRLLR WIC P I R
Sbjct: 532 NYANTMVIDAVTIKNLRIFGEGSLNSVLDRCCTAFGKRLLREWICRPSCRKAIILERQQA 591
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
VE L+ +V L LPDLERLL ++ A+
Sbjct: 592 VEELVDRIDVTQSARAILATLPDLERLLSKIHAQ 625
>gi|303321249|ref|XP_003070619.1| MutS domain III family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110315|gb|EER28474.1| MutS domain III family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 1221
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 140/433 (32%), Positives = 220/433 (50%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D ++ P P YD RTLYIPP A + S +KQYW +K ++ D ++FFK
Sbjct: 298 RYPWL--ANILDMDKNPPGHPDYDPRTLYIPPLAWSRFSPFEKQYWEIKQKFWDTVVFFK 355
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES ++ + VA+G+K+ R++Q
Sbjct: 356 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLEYWANQFVAKGFKIARVDQ 413
Query: 353 LETS------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPD 404
E++ E+ + + VI R+L V+T T VDG + D + + +A+KE
Sbjct: 414 SESALGKEMRERDDKKKGDKVIKRELSCVLTAGTLVDGAMLQDDMSTYCVAVKEALV--- 470
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+ +G +FVD A + ++ DD L+ Q P+E++ E + +A + L+
Sbjct: 471 DDLPAFGVSFVDTATGQFFLTEFTDDVDMTKFETLVAQTRPQELLLEKGFMSPKALRILK 530
Query: 465 KFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQHDI 519
+ + L P +F DAS ++ + + YF + W + L ++
Sbjct: 531 NNTNPTTIWNYLKPER---EFWDASTTRRELDASEYFVSVDQDNIEAWPEVLRQARHKEL 587
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------------- 562
S+ G LI +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 588 VISSFGALIQYLRMLKIERDLITIGNFTWYDPIRKASSLVLDGQTLINLEVFANSYDGGQ 647
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S + + L K
Sbjct: 648 DGTLFQLLNRCITPFGKRMFKQWVCHPLMDSKKINARLDAVDALNADSSIRDQFSSQLTK 707
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ RV A
Sbjct: 708 MPDLERLISRVHA 720
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 154/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F E W + + +D L A ++ RP+ +
Sbjct: 889 EVTSRFYARFDENYQTWLAAVKITAQLDCLIGLAKASTAIGYPSCRPVFV---------- 938
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ VL+ + L HP L G +PND+ LG ++ LLTG N GKST+LR
Sbjct: 939 DSDRSVLEFQELRHPCMLATVGDF-IPNDVKLGGNTASIN----LLTGANAAGKSTVLRM 993
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC A I+AQ+GC+VPC L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 994 TCTAAIMAQIGCYVPCASARLTPVDRIMSRLGANDNIFGAQSTFFVELSETKKILSEATS 1053
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I FATHYH L EF HP ++ +
Sbjct: 1054 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEISPRR 1113
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + D+ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1114 MRI-------HVDEEDRRVTFLYKLEDGVAEGSFGMHCASMCGIPTKVIETAEVAA 1162
>gi|296811026|ref|XP_002845851.1| DNA mismatch repair protein msh6 [Arthroderma otae CBS 113480]
gi|238843239|gb|EEQ32901.1| DNA mismatch repair protein msh6 [Arthroderma otae CBS 113480]
Length = 1216
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 243/488 (49%), Gaps = 64/488 (13%)
Query: 221 VKNCEEEADTT---SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQY 277
V N +++A T +++ WL + I D ++ P YD RTLYIPP A K S +KQY
Sbjct: 266 VSNKKKKAHMTEPENRYPWL--ANIMDMDKNPIGHPDYDPRTLYIPPLAWTKFSPFEKQY 323
Query: 278 WNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAV 337
W +K ++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E +D
Sbjct: 324 WEIKQKFWDTIVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWA 381
Query: 338 EKLVARGYKVGRIEQLET-------------SEQAKARHTNSVISRKLVNVVTPSTTVDG 384
+ VA+G+K+ R++Q E+ S+ KA+ + VI R+L V+T T V+G
Sbjct: 382 NQFVAKGFKIARVDQSESALSKEMREREDKGSKMGKAQKEDKVIKRELACVLTTGTLVEG 441
Query: 385 TI--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
++ G + + +AIKE +G +G +FVD A + ++ DD + Q
Sbjct: 442 SMIQGDMSTYCVAIKEAIV---DGLPAFGISFVDTATGQFFLSEFIDDVDMTRFETFVAQ 498
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFN 501
P+E++ E + +A + L+ ++ + L P V +F +A + + YF
Sbjct: 499 TRPQELLLEKSVMSTKALRILKNNTSPTTLWNYLKP---VKEFWEADMTVRELNAGEYFG 555
Query: 502 -GSSS---PWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC-- 554
G S W L + D+ SA G L+ +L L + D++ G+ Y +
Sbjct: 556 PGDQSNLETWPHVLRDAQDKDLVMSAFGALLQYLQMLKIGRDLVTIGNFTWYDPIKKASS 615
Query: 555 LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
L +DGQTL L+ CVT GKRL + W+CHPL D+ IN RL
Sbjct: 616 LVLDGQTLINLEIFANTYDGSSEGTLFQLLNRCVTPFGKRLFKQWVCHPLVDIAKINARL 675
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVK 652
D VE L ++ V + L K+PDLERL+ +R+ A +C + +VL+ +Q++
Sbjct: 676 DAVESLNADNTVREQFSSQLTKMPDLERLI----SRIHAGTCKAQDFV--RVLEGFEQIE 729
Query: 653 VFGSLVKG 660
L+KG
Sbjct: 730 YTMGLLKG 737
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 155/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + I+ +D L A +S A+ P P + D+ VL
Sbjct: 888 FDENYSSWLAAVKIIAQLDCLIGLA----KASTALGHPSCRP------IFADDERSVLNF 937
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
L HP + N G +PNDI LG DS + LLTG N GKST+LR TC AVI+AQ
Sbjct: 938 HELRHP-CMMPNVGDFIPNDIKLGGDSSNIN----LLTGANAAGKSTVLRMTCTAVIMAQ 992
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPCE L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 993 IGCYVPCEYARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1052
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1053 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAARRMRI------ 1106
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1107 -HVDDAERRVTFLYKLEDGVAEGSFGMHCASMCGIPSKVVEGAEVAA 1152
>gi|195441342|ref|XP_002068471.1| GK20488 [Drosophila willistoni]
gi|194164556|gb|EDW79457.1| GK20488 [Drosophila willistoni]
Length = 1182
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 170/287 (59%), Gaps = 17/287 (5%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F W + I ++ +DVL S A A+ A+ P + P ++ + G
Sbjct: 861 VFEKFSNHYEHWKQCIDCVAMLDVLASLAEYANQQL-AICVPQFVSGGDQPFIQLEEG-- 917
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP N +PN + LG +++ L LLTGPNMGGKSTL+R L V
Sbjct: 918 -------YHPCV---NASTYIPNGLELGTENEAALS---LLTGPNMGGKSTLMRQMGLLV 964
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 965 IMAQIGSHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1024
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V L + + CR LF+THYH L F + +TL HMAC
Sbjct: 1025 LDELGRGTATYDGTAIAASVVNFLAQ-LKCRTLFSTHYHNLIDFFQNDKRITLGHMACMV 1083
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++S+ + + FLY+ T+GACP+SYG A +AG+PQ +++ A
Sbjct: 1084 ENDSDTQDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRA 1130
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 136/455 (29%), Positives = 210/455 (46%), Gaps = 74/455 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 214 KLEFLQPDKIKDKAGRRPDHPDYDKSTLHVPEKFLNSLSPGVRQWWVLKSDNYDCVLFFK 273
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY DA++G EL + G+ G E D L+ RGYKV R+EQ
Sbjct: 274 VGKFYELYHWDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILIDRGYKVARVEQ 330
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPDAV--HLLAIKEGN 400
ET + + KA + V++R++ + T V G+ IGP+ ++LA+ E +
Sbjct: 331 TETPDMMTERCKRIKATKFDKVVAREICQITDRGTQVFGSQCAIGPNHQPNYMLALVEQD 390
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G + +G F+D + +G DD SC+ L LL P +I+E L Q
Sbjct: 391 AGTTSK---FGICFIDTSMGDFHLGEFEDDKSCSRLLTLLSHHMPVLLIHERSSLSARTQ 447
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS-KALENVM---- 515
+ LR +G +L + + +A + KL+ Y G + P + +++++ M
Sbjct: 448 QILRTVLSGILKEQL--PCSGSQVCNAEKTLKLLAEGYYAQGDTWPVTLRSMQSDMDHLG 505
Query: 516 -----QHDIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY---------------- 551
+H + ALG I ++ + L+ ++P Y++Y
Sbjct: 506 LTPSDEHKLTLKALGQCIFYIQKCKLEP-----KVMPMARYQLYRPPDEIAPDVKASQAS 560
Query: 552 -----RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
R + +D TL LD C T GKRLL W+C P +V I
Sbjct: 561 QILKRRSHMVLDATTLSNLRIVGEEHSLLATLDHCCTKMGKRLLHYWLCAPSCEVNVIEE 620
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
R + L + SE+ + A L +PD ER L ++
Sbjct: 621 RQVAIGELRQMSELQEMRA-LLAPMPDFERHLAQI 654
>gi|328718270|ref|XP_001946118.2| PREDICTED: DNA mismatch repair protein Msh6-like [Acyrthosiphon
pisum]
Length = 1185
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 169/289 (58%), Gaps = 18/289 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ--SKNPAVRQDNGGPVL 791
F +K +W+ I ++ +DV S A M P +P K P V G
Sbjct: 873 FCDKFEEWNNAIQCLATLDVFMSLAEYCRCEEEVMCIPTFIPAIIGKKPLVELIEGR--- 929
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLL-TGPNMGGKSTLLRATCLAVI 850
+ G G +PND ++G++ D +L+L TGPNMGGKSTL+R + +
Sbjct: 930 --------YPCGSGGESFIPNDTIIGKEEDGTWNSSLILVTGPNMGGKSTLMRQLGIITV 981
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+A +GC VP + +L+ D IFTR+GA D I+ GESTF VE ET+++L A++ SLV++
Sbjct: 982 MAHMGCRVPAKSLLLNPVDRIFTRIGANDNIIAGESTFFVELCETSAILHHASRFSLVLV 1041
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTST+DG AIA AV +LV++ CR LF+THYH L ++F +P V L HMAC +
Sbjct: 1042 DELGRGTSTYDGTAIASAVVTELVQK-QCRTLFSTHYHSLVEDFKMNPLVALGHMACMVE 1100
Query: 971 SNSENYSKGDQ---ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ N +Q + FLY+ +GACP+SYG A +AG+P +++
Sbjct: 1101 NDETNEIDTEQTQETITFLYKFANGACPKSYGFNAARLAGMPADIIKVG 1149
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 145/554 (26%), Positives = 241/554 (43%), Gaps = 86/554 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+DAN++ P DP Y+ RTLY+P + ++ +Q+W +K+Q+ D +LFFK
Sbjct: 211 KLEFLKPEKIKDANKKSPSDPNYNPRTLYVPEDFKLTLTPGVRQWWELKAQHFDCILFFK 270
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYE+Y +DA KEL+ L G VG E+ L+ +GY V RIEQ
Sbjct: 271 VGKFYEMYHMDAVTTAKELNL---LYMKGDFAHVGFPETAYGRFSAILIEKGYTVARIEQ 327
Query: 353 LETSEQ--------AKARHTNSVISRKLVNVVTPSTTVDGTIGPDA-----VHLLAIKEG 399
ET + K+ + V+ R++ + T T G I + L+AI E
Sbjct: 328 TETPDMMTERCKSLKKSTKFDKVVRREICRITTKGTRTFGIIDGETNDAENSFLIAISEK 387
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+ + +YG F+D + +G DD C+ L L P +V++E L
Sbjct: 388 EIS--SSTSLYGVCFIDTSIGLFHLGQFEDDCHCSRLRTLCAHYPPVQVLFERNKLTVRT 445
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWSKALENVMQHD 518
+K + + + L P + +F +S+ + YF + ++ + + L+ + D
Sbjct: 446 KKVIDTMLSSAVKDALIPDI---EFWPSSKTLITLAEGDYFKHDNNVVYPEKLKTFLGSD 502
Query: 519 ------------IGFSALGGLISHLSRLMLD-DVLRNGDILPYK--------------VY 551
G +LG +I +L R +D +L G YK +
Sbjct: 503 SDLQLNANDECEFGIRSLGAVIWYLQRCKMDFQLLSRGRFDIYKPIDVKSVELTNQDNIN 562
Query: 552 RDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
+ +D TL L+ C T GKRLL W+C+PL + I
Sbjct: 563 SKHMILDAITLKNLHILENSAGSNAGTLLNKLNHCSTPFGKRLLHQWLCNPLTTISSIKA 622
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCI--------VLPLIGK 644
R + + L+ +++ + L LPDLERL R+ + Q+S+ + + K
Sbjct: 623 RQNAISSLIVIPDLMQEIRSELASLPDLERLFSRIYS--QSSNGVESDHAETRAVYFEEK 680
Query: 645 KVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDG--------L 696
K+++ F S++KG R +++++ K I + I + +G L
Sbjct: 681 TYSKRKIIDFISILKGFRTSVNIMEKFQKADIIKENSESNLLAAICNYPNGSVPGVFPHL 740
Query: 697 DKFLTQFEAAIDSD 710
+ L FE + D D
Sbjct: 741 TELLDNFENSFDHD 754
>gi|70994396|ref|XP_751995.1| DNA mismatch repair protein Msh6 [Aspergillus fumigatus Af293]
gi|66849629|gb|EAL89957.1| DNA mismatch repair protein Msh6, putative [Aspergillus fumigatus
Af293]
Length = 1213
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 219/439 (49%), Gaps = 55/439 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD PD P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 283 RYPWL--ASIRDIEGHPPDHPDYDPRTIYIPPLAWAKFSPFEKQYWEIKQKFWDTIVFFK 340
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 341 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 398
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
E++ + R + +I R+L V+T T V+G++ D + + +AIKE
Sbjct: 399 SESALGKEMRERDGKKAGGKEDKIIKRELSCVLTAGTLVEGSMLQDDMSTYCVAIKEAIV 458
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G AFVD A + + DD + Q P+E++ E + +QK
Sbjct: 459 ---DDRPAFGLAFVDTATGQFSLSEFVDDVDMTKFETFVAQTRPQELLLEKSTI---SQK 512
Query: 462 ALR--KFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALEN 513
ALR K + G + L P +F +A K + + YF + + W + L
Sbjct: 513 ALRILKNNTGPTTIWNHLKPG---KEFWEADITVKELDASEYFVSQDDDNLQAWPETLRE 569
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
++ SA G L+ +L L LD D++ G+ Y R L +DGQTL
Sbjct: 570 ARDKEMVMSAFGALVQYLRVLKLDRDLITIGNFSWYDPIRKASSLVLDGQTLINMEIFAN 629
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S V
Sbjct: 630 SFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLMDAKKINARLDAVDALNADSSVRDQF 689
Query: 611 AQYLRKLPDLERLLGRVKA 629
+ L K+PDLERL+ R+ A
Sbjct: 690 SSQLTKMPDLERLISRIHA 708
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E + W + IS +D L S A +S RP+ + ++ VL+
Sbjct: 887 FDENYTTWLAAVRIISQLDCLISLAKASSSLGHPSCRPVFVEDERS----------VLEF 936
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PND+ LG + +P LLTG N GKST+LR TC+AVI+AQ
Sbjct: 937 EELRHPCLLSSVEDF-IPNDVRLGGE----VPNINLLTGANAAGKSTVLRMTCIAVIMAQ 991
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 992 IGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1051
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP +T + M
Sbjct: 1052 GRGTSSYDGVAVAQAVLHHVATHIGAMGFFATHYHSLAAEFDGHPEITPKRMKI------ 1105
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1106 -HVDDEERRITFLYKLEDGVAEGSFGMHCASMCGIPNKVIERAEVAA 1151
>gi|261206036|ref|XP_002627755.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis
SLH14081]
gi|239592814|gb|EEQ75395.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis
SLH14081]
Length = 1170
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 145/440 (32%), Positives = 221/440 (50%), Gaps = 53/440 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 248 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFK 305
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 306 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 363
Query: 353 LETS-------EQAKARHT----NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ +Q K T + +I R+L V+T T VDG++ D + + +AIKE
Sbjct: 364 SESALGKEMREKQGKTNGTPGKQDKIIRRELACVLTSGTLVDGSMLQDDMSTYCVAIKEA 423
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N +G AFVD A + ++ DD + Q P+E++ E + +A
Sbjct: 424 LV---NDLPAFGIAFVDTATGQFYLAEFMDDVDMTKFETFVAQTRPQELLLEKSVMSTKA 480
Query: 460 QKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSS-SPWSKALEN 513
+ L+ + G L L P +F +A + + + YF +G + W +AL +
Sbjct: 481 LRILKN-NTGPTTLWNYLKPC---KEFWEADITVRELDASNYFVSDDGDNIEAWPEALRH 536
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
+ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 537 ARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQTLINLEIFSN 596
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C T GKR+ + W+CHPL D + IN RLD V+ L + +
Sbjct: 597 SFDGGQEGTLFQLLNRCTTPFGKRMFKQWVCHPLMDTKKINARLDAVDALNADRSIQNQF 656
Query: 611 AQYLRKLPDLERLLGRVKAR 630
+ L K+PDLERL+ RV AR
Sbjct: 657 SSQLTKMPDLERLISRVHAR 676
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 147/287 (51%), Gaps = 33/287 (11%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + I+ +D L S A +S RP+ + D+ VL+
Sbjct: 853 FDENYSTWLAAVRVIAQLDCLISLARASSALGYPSCRPVFV----------DDERSVLEF 902
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L G +PND+ LG +S P LLTG N AVI+AQ
Sbjct: 903 EELRHPCMLPNVGDF-IPNDVKLGGNS----PNINLLTGANAA-----------AVIMAQ 946
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC VPC+ L+ D + +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 947 IGCHVPCKSARLTPVDRVMSRLGANDNIFASQSTFFVELSETKKILSEATPRSLVILDEL 1006
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH LT EF HP + + M
Sbjct: 1007 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLTAEFEGHPEIAPRRMRI------ 1060
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1061 -HVDDEEKRVTFLYKLEDGVAEGSFGMHCASMCGIPDKVVERAEVAA 1106
>gi|430813559|emb|CCJ29106.1| unnamed protein product [Pneumocystis jirovecii]
Length = 320
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 190/327 (58%), Gaps = 33/327 (10%)
Query: 744 VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803
+I ++ +D L S ++++ + RP I+ D+ +L+ L HP +
Sbjct: 5 LIKNVAYLDCLTSLSISSMEFAEPSCRPQIV----------DSEYSILEFDELRHPCVVQ 54
Query: 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC 863
VPN I LG ++ P LLTGPNM GKSTLLR TC+AVILAQLGC+VP +
Sbjct: 55 NTSSCFVPNSIKLGGSRNN--PTIALLTGPNMAGKSTLLRQTCIAVILAQLGCWVPAKRI 112
Query: 864 VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGY 923
VL+ D+I +RLGA+D I +STF+VE +ET ++Q++T SLVILDELGRGTST+DG
Sbjct: 113 VLTPMDSIRSRLGASDNIFASQSTFMVELSETKKIIQESTSRSLVILDELGRGTSTYDGL 172
Query: 924 AIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL 983
AIAYA QL + C F+THYH L K+F +HP + + +MA + + +++
Sbjct: 173 AIAYATLHQLSTYVGCLGFFSTHYHSLVKDFENHPKIAMYYMAA-------HVDEDKKKI 225
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE------SFKSS--- 1034
FLY L G SYG+ VA MAG+P+++++ A +A + S S+KSS
Sbjct: 226 TFLYELRPGMSSNSYGMNVAAMAGIPKEIIKNAEISAKKFEISSQHFQLNKASYKSSISL 285
Query: 1035 EQRSEFS-----SLHEEWLKTIVNVSR 1056
+S+FS S+ +E + + +N+ R
Sbjct: 286 ASQSDFSWLVKLSMSKEPIPSTLNLKR 312
>gi|194872672|ref|XP_001973060.1| GG13556 [Drosophila erecta]
gi|190654843|gb|EDV52086.1| GG13556 [Drosophila erecta]
Length = 1190
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 176/303 (58%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL S A A + P ++ ++ P ++ + G
Sbjct: 872 LFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQM-VICVPELVSGAEQPFIQLEEG-- 928
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 929 -------YHPCV---NASTYIPNGLELGTTSEAPLS---LLTGPNMGGKSTLMREVGLLV 975
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 976 IMAQIGAHIPATSCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1035
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + +TL HMAC
Sbjct: 1036 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMV 1094
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1095 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQ 1153
Query: 1025 KSI 1027
+ I
Sbjct: 1154 RKI 1156
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 164/546 (30%), Positives = 240/546 (43%), Gaps = 83/546 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 224 KLEFLQPDKIKDKQGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 283
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA++G EL + G+ G E D L+ RG+KV R+EQ
Sbjct: 284 VGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILIDRGFKVARVEQ 340
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + KA + V++R++ + T V G+ IGP+ ++LAI E +
Sbjct: 341 TETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEQD 400
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G + YG F+D + VG DD +C+ L LL P ++ E L + +Q
Sbjct: 401 EGTWSR---YGVCFIDTSIGDFHVGEFEDDKNCSRLLTLLSHHMPVLLLNEKSALSQRSQ 457
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWS---KALENVMQ 516
+ +R G E P T A + KL+ Y +GS W + +++ M
Sbjct: 458 QIVRTV-LGGILKEQVPGNG-TQACSAEKTLKLLAERYYAGSGSDDNWPLVLRTMQSDMD 515
Query: 517 H---------DIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY------------- 551
H + ALG I + + L+ +LP Y++Y
Sbjct: 516 HLGLTPNDNYKLALKALGQCIFFIHKCKLEP-----KVLPMARYQLYVPPDQLADAKPAV 570
Query: 552 -----RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
R + +D TL LD C T GKRLL W+C P DV I
Sbjct: 571 ASTLRRSHMVLDATTLSNLRIIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVAVIKE 630
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLER------LLGRVKARVQASSCIVLPLIGKKV 646
R D + L++ + + V L LPD ER L G + + L +K+
Sbjct: 631 RQDAIGELIRMASELQEVRALLAPLPDFERNLAQIHLFGNKQIKQMDHPDSRAILFEEKI 690
Query: 647 L-KQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQFE 704
KQ++ F +++KG L L H+ + L RI + P GS L K L F
Sbjct: 691 YNKQKLLGFMAVLKGFNALTKLPTLFHQCETAL--LRRITQLPESGGSFPDLSKELQYFA 748
Query: 705 AAIDSD 710
A D D
Sbjct: 749 TAFDHD 754
>gi|317038145|ref|XP_001401672.2| DNA mismatch repair protein Msh6 [Aspergillus niger CBS 513.88]
Length = 1210
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 219/436 (50%), Gaps = 49/436 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + P YD RTLYIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 279 RYAWL--ANIRDIDGHPIGHPEYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 336
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 337 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 394
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
+E++ + R + VI R+L +V+T T V+G++ D + + +AIKE
Sbjct: 395 IESALGKEMRERDGKKGGGKEDKVIRRELSSVLTAGTLVEGSMLQDDMSTYCVAIKEALI 454
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G AFVD A + ++ DD + Q P+E++ E + +QK
Sbjct: 455 ---DDKPAFGIAFVDTATGQFFLSEFVDDVDMTKFETFVAQTRPQELLLEKSAV---SQK 508
Query: 462 ALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQ 516
ALR + L + V +F +A K + ++ YF + + W +AL
Sbjct: 509 ALRILKNNTGPTTLWNYLKPVKEFWEADITVKELDVSEYFVSQDDDNLQAWPEALREARD 568
Query: 517 HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----------- 562
++ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 569 KELVMSAFGALVQYLRLLKIERDLITIGNFTAYDPIKKATSLVLDGQTLINMEIFSNSFD 628
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ C+T GKR+ + W+CHPL D IN RLD V+ L + V +
Sbjct: 629 GGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDANKINARLDAVDALNADPTVRDQFSSQ 688
Query: 614 LRKLPDLERLLGRVKA 629
L K+PDLERL+ RV A
Sbjct: 689 LTKMPDLERLISRVHA 704
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 197/402 (49%), Gaps = 49/402 (12%)
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII 678
DLE LL RV+ + SS I+ GK++ + +V + VK + D + +
Sbjct: 795 DLESLLKRVRKEL-GSSAIIYKDNGKEIYQLEVPI---KVKNIPKNWDQMSATKQ----- 845
Query: 679 PSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKA 738
+ R + P L K + Q + A ++ + + E F E
Sbjct: 846 --VKRYYFPE-------LRKLIRQLQEAQETH---------SQIVKEVAGRFYARFDENY 887
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W + ++ +D L S A +S RP+ + D+ VL+ + L H
Sbjct: 888 TTWLAAVRIVAQLDCLISLAKASSSLGQPSCRPVFV----------DDERSVLEFEELRH 937
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
P + G +PND+ LG + LLTG N GKST+LR TC+AVI+AQ+GC++
Sbjct: 938 PCLISSVGDF-IPNDVQLGGTHANID----LLTGANAAGKSTVLRMTCVAVIMAQIGCYL 992
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS
Sbjct: 993 PCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTS 1052
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
++DG A+A AV + I FATHYH L EF HP + + M +
Sbjct: 1053 SYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPKRMRI-------HVDD 1105
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1106 EERRVTFLYKLEDGVAEGSFGMHCAAMCGIPDKVIERAEVAA 1147
>gi|258578083|ref|XP_002543223.1| DNA mismatch repair protein msh6 [Uncinocarpus reesii 1704]
gi|237903489|gb|EEP77890.1| DNA mismatch repair protein msh6 [Uncinocarpus reesii 1704]
Length = 1200
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 144/433 (33%), Positives = 220/433 (50%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D + P P YD RTLYIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 277 RYPWL--ANILDIEKNPPGHPDYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 334
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES ++ + VA+G+K+ R++Q
Sbjct: 335 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLEHWANQFVAKGFKIARVDQ 392
Query: 353 LETS------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPD 404
E++ E+ + + +I R+L V+T T VDG + D + + ++IKE
Sbjct: 393 SESALGKEMRERGDKKKGDKIIKRELSCVLTAGTLVDGAMLQDDMSTYCVSIKEALV--- 449
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+ +G +FVD A + ++ DD L+ Q P+E++ E + +A + L+
Sbjct: 450 DDLPAFGVSFVDTATGQFFLTEFVDDIDMTKFETLVAQTRPQELLLEKGFMSPKALRILK 509
Query: 465 KFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQHDI 519
+ + L P +F DAS ++ ++ YF + W + L+ V D+
Sbjct: 510 NNTNPTTIWNHLKPGR---EFWDASTTRRELEAGEYFVSMDQDNIEAWPEVLQQVRDKDL 566
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------------- 562
S+ G LI +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 567 VISSFGALIQYLRMLKIERDLITIGNFTWYDPIRKASSLVLDGQTLINLEIFANSFDGGQ 626
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKRL + W+CHPL D IN RLD VE L +S + + L K
Sbjct: 627 HGTLFQLLNRCITPFGKRLFKQWVCHPLMDSRQINARLDAVEALNADSSIRDQFSSQLTK 686
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ RV A
Sbjct: 687 MPDLERLISRVHA 699
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 154/287 (53%), Gaps = 23/287 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + IS +D L A ++ RP+ + D+ VL+
Sbjct: 877 FDEHYPTWLAAVKIISQLDCLIGLAKASAAIGYPSCRPVFV----------DDERSVLEF 926
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L + G +PND+ LG D+ LLTG N GKST+LR TC AVI+AQ
Sbjct: 927 QELRHPCML--SSGDFIPNDVKLGGDTSSIN----LLTGANAAGKSTVLRMTCTAVIMAQ 980
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC+VPC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 981 IGCYVPCASARLTPVDRIMSRLGANDNIFGAQSTFFVELSETKKILSEATSRSLVILDEL 1040
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP + + M
Sbjct: 1041 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPRRMRI------ 1094
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ D+ + FLY+L +G S+G+ A M G+P KVVE A AA
Sbjct: 1095 -RVDEEDRRVTFLYKLENGVAEGSFGMHCASMCGIPSKVVERAEVAA 1140
>gi|156837100|ref|XP_001642584.1| hypothetical protein Kpol_1075p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156113131|gb|EDO14726.1| hypothetical protein Kpol_1075p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 1251
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/440 (33%), Positives = 221/440 (50%), Gaps = 48/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL IRDA +R DP YD RTLYIP A K +A +KQYW +KS+ D ++FFK
Sbjct: 284 RYQWL--VDIRDAQKRPISDPEYDPRTLYIPSSAWNKFTAFEKQYWEIKSKMWDCVVFFK 341
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA +G+ D KI G + GI E D + + GYKV +++Q
Sbjct: 342 KGKFFELYEKDAMLGNSLFDLKIAGGGRANMQLAGIPEMSFDYWSSQFIQYGYKVAKVDQ 401
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN---CGPD 404
E+ + R + ++ R+L V+T T DG++ A + +AI+E GN C +
Sbjct: 402 RESMLAKEMREGSKGIVKRELECVLTSGTLTDGSMLHSDLATYCMAIREEPGNYYTCNDE 461
Query: 405 N--------GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
N ++G AF+D A + + DD C+ L+ Q+ PKEVI E L
Sbjct: 462 NIVSIEETMSKKIFGVAFIDTATGELQMLEFEDDKECSKFDTLMSQIKPKEVIMEKNNLS 521
Query: 457 KEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV 514
AQK + KF++ A+ + P DF + + L N YF S W L+
Sbjct: 522 NLAQKIV-KFNSSPQAIFNYMKPGTEFYDFHRTYD-ELLKPENAYFE-EQSEWPTILQKY 578
Query: 515 MQH--DIGFSALGGLISHLSRLMLDDVLRN-GDILPYKVYRD--CLRMDGQTL------- 562
+ +GFSA GGL+++L L LD L + G++ Y + + + +DG TL
Sbjct: 579 YNNGKQVGFSAFGGLLNYLKWLKLDSSLISLGNMKEYNLIKSQHSMILDGVTLQNLEIFS 638
Query: 563 -------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
+ +T GKR +R+W+ HPL I+ RLD VE L+ + + +
Sbjct: 639 NTFDGSDKGTLFKLFNRAITPMGKRTMRTWVMHPLLHKADIDKRLDSVEQLLDDPVLRDL 698
Query: 610 VAQYLRKLPDLERLLGRVKA 629
+L K+PDLERLL R+ A
Sbjct: 699 FESHLSKIPDLERLLSRIHA 718
Score = 212 bits (540), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 162/284 (57%), Gaps = 15/284 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W I AIS ID L + A T+ RP ++ + +PA G LK K L H
Sbjct: 903 TSWMPTIEAISKIDCLIALARTSESLGAPSCRPQLVDEI-DPATGAKLNG-YLKFKSLRH 960
Query: 799 P-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
P F LG +PNDI LG+D +P+ LLTG N GKST+LR TC+AVI+AQ+GC
Sbjct: 961 PCFNLGSTSIKEFIPNDIELGKD----VPQLGLLTGANAAGKSTILRMTCVAVIMAQIGC 1016
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VPCE ++ D I TRLGA D IM G+STFLVE +ET +L AT SL++LDELGRG
Sbjct: 1017 YVPCESATMTPVDKIMTRLGANDNIMQGKSTFLVELSETKKILDVATNRSLLVLDELGRG 1076
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA +V + + FATHY L F HP V M+
Sbjct: 1077 GSSNDGFAIAESVLYHVATHMQSLGFFATHYGSLGLSFKGHPQVRPLKMSILV------- 1129
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+G + + FLY+L G S+G+ VA M G+P+K+V+ A AA
Sbjct: 1130 DEGTRNITFLYKLVEGQSEGSFGMHVASMCGIPKKIVDNAQVAA 1173
>gi|67472182|ref|XP_651951.1| mutS family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468745|gb|EAL46564.1| mutS family protein [Entamoeba histolytica HM-1:IMSS]
Length = 934
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 149/232 (64%), Gaps = 13/232 (5%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P K L HP+ +P++I+LG P+T++LTGPNMGGKSTLLR CLA
Sbjct: 685 PYFNAKQLKHPYLTVSTKTSAIPSNIILGGTD----PQTIILTGPNMGGKSTLLRTVCLA 740
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQ+G E +S+ D IFTR+GA+D I+ G STF+VE ETA +L ATQ+SLV
Sbjct: 741 VIMAQMGMRCTGEEITMSVVDHIFTRIGASDDILHGMSTFMVELDETAQMLHDATQNSLV 800
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDELGRGTST DG AIA+AV V +I ++ +THYH L +EF V L HM C
Sbjct: 801 VLDELGRGTSTHDGLAIAHAVVEYTVSKIKPLMIVSTHYHQLCEEFEERGDVKLSHMGCT 860
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++N +++FLY L GACP+SYG++VA MAG+P K+V A + A
Sbjct: 861 IQNN---------QIIFLYTLLDGACPKSYGMKVAEMAGLPTKIVHRAENIA 903
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/464 (28%), Positives = 224/464 (48%), Gaps = 61/464 (13%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I+D N++ + YD TL+IP L KM+ +KQYWN+K DV++FF GKFYELYE
Sbjct: 41 IKDKNQKSIGEQGYDPSTLFIPASCLMKMTPFEKQYWNIKKDNYDVVIFFAKGKFYELYE 100
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA+IG+KEL KIT R G+ ++ + KL+ GYK+G +++ ETSE++K
Sbjct: 101 NDADIGNKELGLKIT--NRVNMRMAGVPKASFNTYASKLLELGYKIGCVDEKETSEESKK 158
Query: 362 RHTN---------SVISRKLVNVVTPSTTVDGTIGPDAVHL--LAIKEGNCGPDNGSVVY 410
R +++ R+L + T ST + + D + +AI C N V Y
Sbjct: 159 RGATVIVNGKREPNIVRRELTRIYTVSTATEPELCSDTSDMFCMAIISNGC---NVGVCY 215
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G D + R+++G + D +L LL +V PKE++ N S
Sbjct: 216 G----DVSVGRIFLGYLEDTELHNSLHTLLHRVHPKEILLLN-----------------S 254
Query: 471 AALELTPAMAVTDFLDASEVKKLVQLNGYFN--GSSSPWSKALENVMQHDIGFSALGGLI 528
+ ++ F + + VK+ +NG K +E +D +A L
Sbjct: 255 ISDDIAHICKNLKFAEITYVKEPEDINGVLPLFADRGRVPKVVEKYSTNDQVMTAFTVLY 314
Query: 529 SHLSRLML-DDVLRNGDILPYKVY-RDCLRMDGQTL-------------------YLDSC 567
++ + L++ + NG Y +D L +D Q++ ++D+C
Sbjct: 315 NYFTTLLVPKTTIINGTFGEYTTLSQDYLIVDAQSIVNLALFASKGKEVEGTLLHFVDNC 374
Query: 568 VTSSGKRLLRS-WICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
T+ GKR+LR ++ PL DV I +R +VVE+ ++N++++ + +LR +PDLERLL +
Sbjct: 375 FTAFGKRMLRERFLLKPLMDVNKILHRQEVVEFFLENNDLIDQIGTFLRVIPDLERLLSQ 434
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
+ S + + G + ++ + ++VK + + ++L
Sbjct: 435 CTSSTITESNFIRMISGFETCQKLMNELKTIVKDMPEVLQTIVL 478
>gi|449705043|gb|EMD45176.1| mutS family protein [Entamoeba histolytica KU27]
Length = 934
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 149/232 (64%), Gaps = 13/232 (5%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P K L HP+ +P++I+LG P+T++LTGPNMGGKSTLLR CLA
Sbjct: 685 PYFNAKQLKHPYLTVSTKTSAIPSNIILGGTD----PQTIILTGPNMGGKSTLLRTVCLA 740
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQ+G E +S+ D IFTR+GA+D I+ G STF+VE ETA +L ATQ+SLV
Sbjct: 741 VIMAQMGMRCTGEEITMSVVDHIFTRIGASDDILHGMSTFMVELDETAQMLHDATQNSLV 800
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDELGRGTST DG AIA+AV V +I ++ +THYH L +EF V L HM C
Sbjct: 801 VLDELGRGTSTHDGLAIAHAVVEYTVSKIKPLMIVSTHYHQLCEEFEERGDVKLSHMGCT 860
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++N +++FLY L GACP+SYG++VA MAG+P K+V A + A
Sbjct: 861 IQNN---------QIIFLYTLLDGACPKSYGMKVAEMAGLPTKIVHRAENIA 903
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/464 (28%), Positives = 224/464 (48%), Gaps = 61/464 (13%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I+D N++ + YD TL+IP L KM+ +KQYWN+K DV++FF GKFYELYE
Sbjct: 41 IKDKNQKSIGEQGYDPSTLFIPASCLMKMTPFEKQYWNIKKDNYDVVIFFAKGKFYELYE 100
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA+IG+KEL KIT R G+ ++ + KL+ GYK+G +++ ETSE++K
Sbjct: 101 NDADIGNKELGLKIT--NRVNMRMAGVPKASFNTYASKLLELGYKIGCVDEKETSEESKK 158
Query: 362 RHTN---------SVISRKLVNVVTPSTTVDGTIGPDAVHL--LAIKEGNCGPDNGSVVY 410
R +++ R+L + T ST + + D + +AI C N V Y
Sbjct: 159 RGATVIVNGKREPNIVRRELTRIYTVSTATEPELCSDTSDMFCMAIISNGC---NVGVCY 215
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G D + R+++G + D +L LL +V PKE++ N S
Sbjct: 216 G----DVSVGRIFLGYLEDTELHNSLHTLLHRVHPKEILLLN-----------------S 254
Query: 471 AALELTPAMAVTDFLDASEVKKLVQLNGYFN--GSSSPWSKALENVMQHDIGFSALGGLI 528
+ ++ F + + VK+ +NG K +E +D +A L
Sbjct: 255 ISDDIAHICKNLKFAEITYVKEPEDINGVLPLFADRGRVPKVVEKYSTNDQVMTAFTVLY 314
Query: 529 SHLSRLML-DDVLRNGDILPYKVY-RDCLRMDGQTL-------------------YLDSC 567
++ + L++ + NG Y +D L +D Q++ ++D+C
Sbjct: 315 NYFTTLLVPKTTIINGTFGEYTTLSQDYLIVDAQSIVNLALFASKGKEVEGTLLHFVDNC 374
Query: 568 VTSSGKRLLRS-WICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
T+ GKR+LR ++ PL DV I +R +VVE+ ++N++++ + +LR +PDLERLL +
Sbjct: 375 FTAFGKRMLRERFLLKPLMDVNKILHRQEVVEFFLENNDLIDQIGTFLRVIPDLERLLSQ 434
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
+ S + + G + ++ + ++VK + + ++L
Sbjct: 435 CTSSTITESNFIRMISGFETCQKLMNELKTIVKDMPEVLQTIVL 478
>gi|134058585|emb|CAK44621.1| unnamed protein product [Aspergillus niger]
Length = 1193
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 219/436 (50%), Gaps = 49/436 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + P YD RTLYIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 262 RYAWL--ANIRDIDGHPIGHPEYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 319
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 320 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 377
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
+E++ + R + VI R+L +V+T T V+G++ D + + +AIKE
Sbjct: 378 IESALGKEMRERDGKKGGGKEDKVIRRELSSVLTAGTLVEGSMLQDDMSTYCVAIKEALI 437
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G AFVD A + ++ DD + Q P+E++ E + +QK
Sbjct: 438 ---DDKPAFGIAFVDTATGQFFLSEFVDDVDMTKFETFVAQTRPQELLLEKSAV---SQK 491
Query: 462 ALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQ 516
ALR + L + V +F +A K + ++ YF + + W +AL
Sbjct: 492 ALRILKNNTGPTTLWNYLKPVKEFWEADITVKELDVSEYFVSQDDDNLQAWPEALREARD 551
Query: 517 HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----------- 562
++ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 552 KELVMSAFGALVQYLRLLKIERDLITIGNFTAYDPIKKATSLVLDGQTLINMEIFSNSFD 611
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ C+T GKR+ + W+CHPL D IN RLD V+ L + V +
Sbjct: 612 GGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDANKINARLDAVDALNADPTVRDQFSSQ 671
Query: 614 LRKLPDLERLLGRVKA 629
L K+PDLERL+ RV A
Sbjct: 672 LTKMPDLERLISRVHA 687
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 197/402 (49%), Gaps = 49/402 (12%)
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII 678
DLE LL RV+ + SS I+ GK++ + +V + VK + D + +
Sbjct: 778 DLESLLKRVRKEL-GSSAIIYKDNGKEIYQLEVPI---KVKNIPKNWDQMSATKQ----- 828
Query: 679 PSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKA 738
+ R + P L K + Q + A ++ + + E F E
Sbjct: 829 --VKRYYFPE-------LRKLIRQLQEAQETH---------SQIVKEVAGRFYARFDENY 870
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W + ++ +D L S A +S RP+ + D+ VL+ + L H
Sbjct: 871 TTWLAAVRIVAQLDCLISLAKASSSLGQPSCRPVFV----------DDERSVLEFEELRH 920
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
P + G +PND+ LG + LLTG N GKST+LR TC+AVI+AQ+GC++
Sbjct: 921 PCLISSVGDF-IPNDVQLGGTHANID----LLTGANAAGKSTVLRMTCVAVIMAQIGCYL 975
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS
Sbjct: 976 PCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTS 1035
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
++DG A+A AV + I FATHYH L EF HP + + M +
Sbjct: 1036 SYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPKRMRI-------HVDD 1088
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1089 EERRVTFLYKLEDGVAEGSFGMHCAAMCGIPDKVIERAEVAA 1130
>gi|239611022|gb|EEQ88009.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis ER-3]
Length = 1170
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 145/440 (32%), Positives = 221/440 (50%), Gaps = 53/440 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 248 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFK 305
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 306 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 363
Query: 353 LETS-------EQAKARHT----NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ +Q K T + +I R+L V+T T VDG++ D + + +AIKE
Sbjct: 364 SESALGKEMREKQGKTNGTPGKQDKIIRRELACVLTSGTLVDGSMLQDDMSTYCVAIKEA 423
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N +G AFVD A + ++ DD + Q P+E++ E + +A
Sbjct: 424 LV---NDLPAFGIAFVDTATGQFYLAEFIDDVDMTKFETFVAQTRPQELLLEKSVMSTKA 480
Query: 460 QKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSS-SPWSKALEN 513
+ L+ + G L L P +F +A + + + YF +G + W +AL +
Sbjct: 481 LRILKN-NTGPTTLWNYLKPC---KEFWEADITVRELDASNYFVSDDGDNIEAWPEALRH 536
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
+ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 537 ARDKEFVMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQTLINLEIFSN 596
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C T GKR+ + W+CHPL D + IN RLD V+ L + +
Sbjct: 597 SFDGGQEGTLFQLLNRCTTPFGKRMFKQWVCHPLMDTKKINARLDAVDALNADRSIQNQF 656
Query: 611 AQYLRKLPDLERLLGRVKAR 630
+ L K+PDLERL+ RV AR
Sbjct: 657 SSQLTKMPDLERLISRVHAR 676
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 147/287 (51%), Gaps = 33/287 (11%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + I+ +D L S A +S RP+ + D+ VL+
Sbjct: 853 FDENYSTWLAAVRVIAQLDCLISLARASSALGYPSCRPVFV----------DDERSVLEF 902
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L G +PND+ LG +S P LLTG N AVI+AQ
Sbjct: 903 EELRHPCMLPNVGDF-IPNDVKLGGNS----PNINLLTGANAA-----------AVIMAQ 946
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC VPC+ L+ D + +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 947 IGCHVPCKSARLTPVDRVMSRLGANDNIFASQSTFFVELSETKKILSEATPRSLVILDEL 1006
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH LT EF HP + + M
Sbjct: 1007 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLTAEFEGHPEIAPRRMRI------ 1060
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1061 -HVDDEEKRVTFLYKLEDGVAEGSFGMHCASMCGIPDKVVERAEVAA 1106
>gi|320035900|gb|EFW17840.1| DNA mismatch repair protein msh6 [Coccidioides posadasii str.
Silveira]
Length = 1204
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 140/433 (32%), Positives = 219/433 (50%), Gaps = 46/433 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D ++ P P YD RTLYIPP A + S +KQYW +K ++ D ++FFK
Sbjct: 281 RYPWL--ANILDMDKNPPGHPDYDPRTLYIPPLAWSRFSPFEKQYWEIKQKFWDTVVFFK 338
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES ++ + VA+G+K+ R++Q
Sbjct: 339 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLEYWANQFVAKGFKIARVDQ 396
Query: 353 LETS------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPD 404
E++ E+ + + VI R+L V+T T VDG + D + + +A+KE
Sbjct: 397 SESALGKEMRERDDKKKGDKVIKRELSCVLTAGTLVDGAMLQDDMSTYCVAVKEALV--- 453
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+ +G +FVD A + ++ DD L+ Q P+E++ E + +A + L+
Sbjct: 454 DDLPAFGVSFVDTATGQFFLTEFTDDVDMTKFETLVAQTRPQELLLEKGFMSPKALRILK 513
Query: 465 KFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQHDI 519
+ + L P +F DAS ++ + YF + W + L ++
Sbjct: 514 NNTNPTTIWNYLKPER---EFWDASTTRRELDAGEYFVSVDQDNIEAWPEVLRQARHKEL 570
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------------- 562
S+ G LI +L L ++ D++ G+ Y R L +DGQTL
Sbjct: 571 VISSFGALIQYLRMLKIERDLITIGNFTWYDPIRKASSLVLDGQTLINLEVFANSYDGGQ 630
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S + + L K
Sbjct: 631 DGTLFQLLNRCITPFGKRMFKQWVCHPLMDSKKINARLDAVDALNADSSIRDQFSSQLTK 690
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ RV A
Sbjct: 691 MPDLERLISRVHA 703
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F E W + + +D L A ++ RP+ +
Sbjct: 872 EVTSRFYARFDENYQTWLAAVKITAQLDCLIGLAKASTAIGYPSCRPVFV---------- 921
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ VL+ + L HP L G +PND+ LG ++ LLTG N GKST+LR
Sbjct: 922 DSDRSVLEFQELRHPCMLATVGDF-IPNDVKLGGNTASIN----LLTGANAAGKSTVLRM 976
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC AVI+AQ+GC+VPC L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 977 TCTAVIMAQIGCYVPCASARLTPVDRIMSRLGANDNIFGAQSTFFVELSETKKILSEATS 1036
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I FATHYH L EF HP ++ +
Sbjct: 1037 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEISPRR 1096
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + D+ + FLY+L G S+G+ A M G+P +V+E A AA
Sbjct: 1097 MRI-------HVDEEDRRVTFLYKLEDGVAEGSFGMHCASMCGIPTQVIETAEVAA 1145
>gi|407038395|gb|EKE39107.1| mutS family protein [Entamoeba nuttalli P19]
Length = 934
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 149/232 (64%), Gaps = 13/232 (5%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P K L HP+ +P++I+LG P+T++LTGPNMGGKSTLLR CLA
Sbjct: 685 PYFNAKQLKHPYLTVSTKTNAIPSNIILGGTD----PQTIILTGPNMGGKSTLLRTVCLA 740
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQ+G E +S+ D IFTR+GA+D I+ G STF+VE ETA +L ATQ+SLV
Sbjct: 741 VIMAQMGMRCTGEEITMSVVDHIFTRIGASDDILHGMSTFMVELDETAQMLHDATQNSLV 800
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDELGRGTST DG AIA+AV V +I ++ +THYH L +EF V L HM C
Sbjct: 801 VLDELGRGTSTHDGLAIAHAVVEYTVSKIKPLMIVSTHYHQLCEEFEERGDVKLSHMGCT 860
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++N +++FLY L GACP+SYG++VA MAG+P K+V A + A
Sbjct: 861 IQNN---------QIIFLYTLLDGACPKSYGMKVAEMAGLPTKIVHRAENIA 903
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/464 (28%), Positives = 224/464 (48%), Gaps = 61/464 (13%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I+D N++ + YD TL+IP L KM+ +KQYWN+K DV++FF GKFYELYE
Sbjct: 41 IKDKNQKSIGEQGYDPSTLFIPASCLMKMTPFEKQYWNIKKDNYDVVIFFAKGKFYELYE 100
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA+IG+KEL KIT R G+ ++ + KL+ GYK+G +++ ETSE++K
Sbjct: 101 NDADIGNKELGLKIT--NRVNMRMAGVPKASFNTYASKLLELGYKIGCVDEKETSEESKK 158
Query: 362 RHTN---------SVISRKLVNVVTPSTTVDGTIGPDAVHL--LAIKEGNCGPDNGSVVY 410
R +++ R+L + T ST + + D + +AI C N V Y
Sbjct: 159 RGATVIVNGKREPNIVRRELTRIYTVSTATEPELCSDTSDMFCMAIISNGC---NVGVCY 215
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G D + R+++G + D +L LL +V PKE++ N S
Sbjct: 216 G----DVSVGRIFLGYLEDTELHNSLHTLLHRVHPKEILLLN-----------------S 254
Query: 471 AALELTPAMAVTDFLDASEVKKLVQLNGYFN--GSSSPWSKALENVMQHDIGFSALGGLI 528
+ ++ F + + VK+ +NG K +E +D +A L
Sbjct: 255 ISDDIAHICKNLKFAEITYVKEPEDINGVLPLFADRGRVPKVVEKYSTNDQVMTAFTVLY 314
Query: 529 SHLSRLML-DDVLRNGDILPYKVY-RDCLRMDGQTL-------------------YLDSC 567
++ + L++ + NG Y +D L +D Q++ ++D+C
Sbjct: 315 NYFTTLLVPKTTIINGTFGEYTTLSQDYLIVDAQSIVNLALFASKGKEVEGTLLHFVDNC 374
Query: 568 VTSSGKRLLRS-WICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
T+ GKR+LR ++ PL DV I +R +VVE+ ++N++++ + +LR +PDLERLL +
Sbjct: 375 FTAFGKRMLRERFLLKPLMDVNKILHRQEVVEFFLENNDLIDQIGTFLRVIPDLERLLSQ 434
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
+ S + + G + ++ + ++VK + + ++L
Sbjct: 435 CTSSTITESNFIRMISGFETCQKLMNELKTIVKDMPEVLQTIVL 478
>gi|327350733|gb|EGE79590.1| DNA mismatch repair protein msh6 [Ajellomyces dermatitidis ATCC
18188]
Length = 1244
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/440 (33%), Positives = 221/440 (50%), Gaps = 53/440 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + I D +R P P YD RT+YIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 311 RYPWL--ANITDIDRNPPGHPDYDPRTIYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFK 368
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 369 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 426
Query: 353 LETS-------EQAKARHT----NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEG 399
E++ +Q K T + +I R+L V+T T VDG++ D + + +AIKE
Sbjct: 427 SESALGKEMREKQGKTNGTPGKQDKIIRRELACVLTSGTLVDGSMLQDDMSTYCVAIKEA 486
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N +G AFVD A + ++ DD + Q P+E++ E + +A
Sbjct: 487 LV---NDLPAFGIAFVDTATGQFYLAEFIDDVDMTKFETFVAQTRPQELLLEKSVMSTKA 543
Query: 460 QKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF---NGSS-SPWSKALEN 513
+ L K + G L L P +F +A + + + YF +G + W +AL +
Sbjct: 544 LRIL-KNNTGPTTLWNYLKPC---KEFWEADITVRELDASNYFVSDDGDNIEAWPEALRH 599
Query: 514 VMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL-------- 562
+ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 600 ARDKEFVMSAFGALVQYLKMLKIERDLITIGNFTWYDPIKKATSLVLDGQTLINLEIFSN 659
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L+ C T GKR+ + W+CHPL D + IN RLD V+ L + +
Sbjct: 660 SFDGGQEGTLFQLLNRCTTPFGKRMFKQWVCHPLMDTKKINARLDAVDALNADRSIQNQF 719
Query: 611 AQYLRKLPDLERLLGRVKAR 630
+ L K+PDLERL+ RV AR
Sbjct: 720 SSQLTKMPDLERLISRVHAR 739
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 156/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + I+ +D L S A +S RP+ + D+ VL+
Sbjct: 916 FDENYSTWLAAVRVIAQLDCLISLARASSALGYPSCRPVFV----------DDERSVLEF 965
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L G +PND+ LG +S P LLTG N GKST+LR TC AVI+AQ
Sbjct: 966 EELRHPCMLPNVGDF-IPNDVKLGGNS----PNINLLTGANAAGKSTILRMTCTAVIMAQ 1020
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC VPC+ L+ D + +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 1021 IGCHVPCKSARLTPVDRVMSRLGANDNIFASQSTFFVELSETKKILSEATPRSLVILDEL 1080
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH LT EF HP + + M
Sbjct: 1081 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLTAEFEGHPEIAPRRMRI------ 1134
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 1135 -HVDDEEKRVTFLYKLEDGVAEGSFGMHCASMCGIPDKVVERAEVAA 1180
>gi|147861780|emb|CAN78918.1| hypothetical protein VITISV_032225 [Vitis vinifera]
Length = 1349
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 165/285 (57%), Gaps = 21/285 (7%)
Query: 757 FAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF----ALGENGGLPVPN 812
A+ G RP+I + N P K L HP +LG+ G VPN
Sbjct: 1025 LAIANDYYEGPTCRPVI------SGLSNSNEVPCFTAKSLGHPVLRSDSLGK--GTFVPN 1076
Query: 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
DI +G C +LLTGPNMGGKSTLLR CLAVILAQ+G VP E LS D IF
Sbjct: 1077 DITIGGSDHACF---ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSPVDRIF 1133
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
R+GA D IM G+STFL E +ETAS+L AT +SLV LDELGRGTST DG AIA +V
Sbjct: 1134 VRMGAKDNIMAGQSTFLTELSETASMLTSATCNSLVALDELGRGTSTSDGQAIAESVLEH 1193
Query: 933 LVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSG 992
V ++ CR +F+THYH L ++ + V+L HMAC G +E+ FLYRL G
Sbjct: 1194 FVHKVRCRGMFSTHYHRLAVDYKKNSKVSLCHMACQVGKG----VGGVEEVTFLYRLRPG 1249
Query: 993 ACPESYGLQVAVMAG--VPQKVVEAASHAALAMKKSIGESFKSSE 1035
ACP+SYG+ VA +AG +P V++ A+ + ++ G K S+
Sbjct: 1250 ACPKSYGVNVARLAGKELPNSVLQKAAAKSREIEGIYGRHRKGSD 1294
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 164/580 (28%), Positives = 272/580 (46%), Gaps = 106/580 (18%)
Query: 173 GPDTPGMHRVVPRLKRIL-EDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEE---- 227
GP +V P+ ++ + E + G ++ SS +++ SV +KN E
Sbjct: 228 GPKKGQSKKVDPKKRKAVGEGTMGSGKRRKSS--GGAEKNTFKVSSVEPMKNAESRKASD 285
Query: 228 -------ADTTSKFEWLDPSKI-------RDANRRRPDDPLYDKRTLYIPPEALKKMSAS 273
D +F + K+ +DA RR P D YD RTLY+PP LK ++
Sbjct: 286 ILDNVLPGDALERFGAREAEKLPFLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGG 345
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI 333
Q+Q+W KS++MD ++FFK+GKFYEL+E+DA IG KELD + S S S +
Sbjct: 346 QRQWWEFKSRHMDKVIFFKMGKFYELFEMDAHIGAKELDLQYMKS---------TSISFM 396
Query: 334 DDAVEKLVA------RGYKVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPSTTV 382
+ +++ +GY+V +EQ ET EQ + R + V+ R++ VVT T
Sbjct: 397 NPFSSRILTGAPWTVQGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLT 456
Query: 383 DGTI---GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+G + PDA +L+A+ E +C + S +G VD A R+ +G DD+ C+ L L
Sbjct: 457 EGEMLSANPDASYLMAVTE-SCQFEERS--FGVCVVDVATSRIILGQFRDDSECSTLCCL 513
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA----SEVKKL-- 493
L ++ P E+I L E ++AL + + EL P +++F D+ SE++ +
Sbjct: 514 LSELRPVEIIKPANLLSPETERALMRHTRSPLVNELVP---ISEFWDSKKTVSEIRSVYR 570
Query: 494 ----VQLNGYFN----------------GSSSPWSKALENVMQHDIGFSALGGLISHLSR 533
+ ++G N G SK + + SALGG + +L +
Sbjct: 571 CFNDLSVSGSLNEANLSVKXSFVEEDPLGLPDILSKLVNAGESGSLALSALGGTLFYLKQ 630
Query: 534 LMLDDVL---RNGDILPY----------------------KVYRDCLRMDGQ-TLY--LD 565
+D+ L ++ PY +++ + + D TLY L+
Sbjct: 631 AFMDETLLRFAKFELFPYSGVSDIFHKPYMVLDAAALENLEIFENSRKGDSSGTLYAQLN 690
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK-NSEVVMVVAQYLRKLPDLERLL 624
CVT+ GKRLL++W+ PL ++ I R D V L N + + L +LPD+ERLL
Sbjct: 691 HCVTAFGKRLLKTWLARPLYHLDSIRERQDAVAGLRGVNLPSALEFRKELSRLPDMERLL 750
Query: 625 GRVKARVQASSCIVLPLI-GKKVLKQQVKVFGSLVKGLRI 663
R+ A +A+ ++ + K+Q++ F S ++G +
Sbjct: 751 ARIFASSEANGRNANKVVFYEDAAKKQLQEFISALRGCEL 790
>gi|350632200|gb|EHA20568.1| hypothetical protein ASPNIDRAFT_50490 [Aspergillus niger ATCC 1015]
Length = 1188
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/436 (32%), Positives = 218/436 (50%), Gaps = 49/436 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + P YD RTLYIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 257 RYAWL--ANIRDIDGHPIGHPEYDPRTLYIPPLAWTKFSPFEKQYWEIKQKFWDTVVFFK 314
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 315 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 372
Query: 353 LETSEQAKARH---------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
+E++ + R + VI R+L +V+T T V+G++ D + + +AIKE
Sbjct: 373 IESALGKEMRERDGKKGGGKEDKVIRRELSSVLTAGTLVEGSMLQDDMSTYCVAIKEALI 432
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G AFVD A + ++ DD + Q P+E++ E + +QK
Sbjct: 433 ---DDKPAFGIAFVDTATGQFFLSEFVDDVDMTKFETFVAQTRPQELLLEKSAV---SQK 486
Query: 462 ALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQ 516
ALR + L + V +F +A K + + YF + + W +AL
Sbjct: 487 ALRILKNNTGPTTLWNYLKPVKEFWEADITVKELDASEYFVSQDDDNLQAWPEALREARD 546
Query: 517 HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----------- 562
++ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 547 KELVMSAFGALVQYLRLLKIERDLITIGNFTAYDPIKKATSLVLDGQTLINMEIFSNSFD 606
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ C+T GKR+ + W+CHPL D IN RLD V+ L + V +
Sbjct: 607 GGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDANKINARLDAVDALNADPTVRDQFSSQ 666
Query: 614 LRKLPDLERLLGRVKA 629
L K+PDLERL+ RV A
Sbjct: 667 LTKMPDLERLISRVHA 682
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 197/402 (49%), Gaps = 49/402 (12%)
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII 678
DLE LL RV+ + SS I+ GK++ + +V + VK + D + +
Sbjct: 773 DLESLLKRVRKEL-GSSAIIYKDNGKEIYQLEVPI---KVKNIPKNWDQMSATKQ----- 823
Query: 679 PSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKA 738
+ R + P L K + Q + A ++ + + E F E
Sbjct: 824 --VKRYYFPE-------LRKLIRQLQEAQETH---------SQIVKEVAGRFYARFDENY 865
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W + ++ +D L S A +S RP+ + D+ VL+ + L H
Sbjct: 866 TTWLAAVRIVAQLDCLISLAKASSSLGQPSCRPVFV----------DDERSVLEFEELRH 915
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
P + G +PND+ LG + LLTG N GKST+LR TC+AVI+AQ+GC++
Sbjct: 916 PCLISSVGDF-IPNDVQLGGTHANID----LLTGANAAGKSTVLRMTCVAVIMAQIGCYL 970
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDELGRGTS
Sbjct: 971 PCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTS 1030
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
++DG A+A AV + I FATHYH L EF HP + + M +
Sbjct: 1031 SYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEIAPKRMRI-------HVDD 1083
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1084 EERRVTFLYKLEDGVAEGSFGMHCAAMCGIPDKVIERAEVAA 1125
>gi|300123248|emb|CBK24521.2| unnamed protein product [Blastocystis hominis]
Length = 1265
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 172/290 (59%), Gaps = 19/290 (6%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASM--SSGAMHRPLILPQSKNPAVRQDNGGPVL 791
F + W ++++ ++ +DVL+S AV +S+ + G RPL + + + VL
Sbjct: 948 FYQHYDHWKQMVNCVATLDVLQSLAVASSVGDNRGDCARPLFVERGRG-------ASAVL 1000
Query: 792 KIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+++ HP + + G + NDI LG + C ++TGPNMGGKSTLLR +++I
Sbjct: 1001 ELQNSRHPCVINTFSHGDFIANDISLGGSAASCK----IITGPNMGGKSTLLRQVAVSII 1056
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
LAQ+GCFVP LS D IFTR+GA DRI++ +STF VE ET+ +L T+DS +I+
Sbjct: 1057 LAQIGCFVPASYMRLSPVDRIFTRIGAQDRILSNQSTFYVELIETSLILSNCTEDSFLII 1116
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTST+DG AI YAV + L CRLLF+THY+ + F + P ++ +M+ +
Sbjct: 1117 DELGRGTSTYDGSAIVYAVLKYLSHIKKCRLLFSTHYNFIITSFVNDPSISTGYMSYLLE 1176
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
G + FLY+L G CPES+GL VA ++ +P+ V+ A A
Sbjct: 1177 Q-----VNGQDRVTFLYKLVEGVCPESFGLNVARLSMIPESVLSRAKEVA 1221
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 204/487 (41%), Gaps = 102/487 (20%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVG 294
EW+ RD + P DP YD +L++P + L+ + KQ+W VK Q D +L KVG
Sbjct: 262 EWM--IHPRDKYKHSPSDPKYDPTSLFVPSDYLRGCTNGMKQWWAVKQQAFDCVLLMKVG 319
Query: 295 KFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
KFYE Y +DA+I K D + G+ G E+ +LV Y+V R+EQ E
Sbjct: 320 KFYETYHMDADIVVKVCDL---VYMKGETAHAGFPEAAYSKFSNQLVNANYRVARVEQTE 376
Query: 355 TSEQAKARHT----NSVISRKLVNVVTPSTTVDGTIG-----PDAVHLLAI--------- 396
T +Q K R+ +++ R++ +++TP GT+ D L +I
Sbjct: 377 TPQQMKERNAVSEKKALVRREVCSIITPGVAGHGTVDKIYNQKDHRILCSIVEERKDESP 436
Query: 397 KEGNCGPD------------NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
+E + G D N +VV G VD ++G DD AL L++
Sbjct: 437 EEEDLGKDEEKGKKMVQGGKNAAVVIGLCIVDTVFGDFYLGQFIDDDQRTALRTQLLRFL 496
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF--NG 502
P E I L + LR+ SA L + + + +LV+ N F +
Sbjct: 497 PTEFILHKNALHSRTIQLLRR-ECPSAMLSFVDPQSS---FEPQHLLRLVKQNNLFDTDD 552
Query: 503 SSSP---WSKALENVMQH----DIGFSALGG-------------------------LISH 530
S P W LE +++ + FS + LI +
Sbjct: 553 DSMPKGEWPDLLEMIVKDREHPEPAFSQVLSALYLSSAYLHRCCVARLLMSQHKFYLIDN 612
Query: 531 LSR---------------------LMLDDV-LRNGDILPYKVYRDCLRMDGQTL--YLDS 566
+ R ++LD + LRN DILP D +L Y+D
Sbjct: 613 IDRERDQLVPFISNQLEEVPTQSNMILDAITLRNLDILP-----DPSNPSTNSLFQYIDH 667
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
VT GKRLL+ W+C PL ++ IN RLD VE L+ + + ++ + + D++RLL R
Sbjct: 668 TVTPFGKRLLKEWLCKPLYQIDAINKRLDAVEELISKTHISQLITTSFKGIVDVDRLLSR 727
Query: 627 VKARVQA 633
+ Q+
Sbjct: 728 LHDYCQS 734
>gi|194751549|ref|XP_001958088.1| GF10737 [Drosophila ananassae]
gi|190625370|gb|EDV40894.1| GF10737 [Drosophila ananassae]
Length = 1187
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 176/303 (58%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL S A A + P ++ ++ P ++ + G
Sbjct: 869 LFEKFSNHYEQWKQCIDCVANLDVLGSLAEYAGQQM-VICVPELVSGAEQPFIQLEEG-- 925
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 926 -------YHPCV---NASTYIPNGLELGTKSEAPLS---LLTGPNMGGKSTLMRELGLLV 972
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 973 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1032
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + +TL HMAC
Sbjct: 1033 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMV 1091
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1092 E-NEDNEDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQ 1150
Query: 1025 KSI 1027
+ I
Sbjct: 1151 RKI 1153
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 161/549 (29%), Positives = 236/549 (42%), Gaps = 89/549 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YD TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 221 KLEFLQPDKIKDKAGRRPDHPDYDSSTLHVPDKFLNSLSPGVRQWWVLKSDNYDCVLFFK 280
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA++G EL + G+ G E D L+ RGYKV R+EQ
Sbjct: 281 VGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSNILIDRGYKVARVEQ 337
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + KA + V++R++ + T V G+ IGP+ ++LA+ E +
Sbjct: 338 TETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLALVEQD 397
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G + YG F+D + +G DD +C+ L LL P ++ E L Q
Sbjct: 398 LG---TTSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLLSHNMPVLLLNEKSALSLRTQ 454
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWSKALENVMQHDI 519
+ +R G E PA + +A + KL+ Y +GS W L MQ D+
Sbjct: 455 QIVRTV-LGGILKEQVPANG-SQACNAEKTLKLLAERYYAGSGSDDNWPLVL-RTMQSDL 511
Query: 520 -------------GFSALGGLISHLSRLMLDDVLRNGDILP---YKVY------------ 551
ALG I + + L+ +LP Y +Y
Sbjct: 512 DHLGLTPNDDYKMALKALGECIFFIHKCKLEP-----KVLPMARYHMYVPPDQIADAKPA 566
Query: 552 ------RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGIN 591
R + +D TL LD C T GKRLL W+C P DV I
Sbjct: 567 VASTLRRSHMVLDATTLSNLRIIGEEHSLLATLDHCCTKFGKRLLHHWLCAPSCDVAVIK 626
Query: 592 NRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV--------KARVQASSCIVLPLIG 643
R + + L++ + + L +PD ER L ++ K S +L
Sbjct: 627 ERQEAIGELIRLPSELQEMRALLAPMPDFERNLAQIHLFGNKQLKEMNHPDSRAIL-FEE 685
Query: 644 KKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIFKPPIFDGS-DGLDKFLT 701
K K ++ F +++KG + M+ H+ E + L RI + P GS L K L
Sbjct: 686 KIYNKHKLLGFMAVLKGFNALTKIPMMFHQCETDL---LKRITQLPESGGSFPDLSKELK 742
Query: 702 QFEAAIDSD 710
F A D D
Sbjct: 743 YFATAFDHD 751
>gi|361129993|gb|EHL01869.1| putative DNA mismatch repair protein msh6 [Glarea lozoyensis 74030]
Length = 963
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 162/553 (29%), Positives = 262/553 (47%), Gaps = 64/553 (11%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
K C+ E + ++ WL +K+ D +R P YD RT+YIPP A S +KQYW +K
Sbjct: 214 KACKSEPE--KRYTWL--AKLEDLDRNPIGHPDYDPRTVYIPPNAFANFSPFEKQYWEIK 269
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E +D + V
Sbjct: 270 QKFFDTIVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFV 327
Query: 342 ARGYKVGRIEQLETS------------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD 389
A+G+K+ R++Q+E++ ++ K + +I R+L V+T T V+G++ D
Sbjct: 328 AKGFKIARVDQMESALGKEMREADDGGKKGKPSKADKIIRRELACVLTGGTLVEGSMLQD 387
Query: 390 --AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
A +AIKE + +G AFVD A + ++ DD ++ Q P+E
Sbjct: 388 DMATFCVAIKESVV---DDLPAFGIAFVDTATGQFFLSYFVDDVDLTKFETIVAQTRPQE 444
Query: 448 VIYENRGLCKEAQKALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFN----G 502
++ E + +A + L+ + + P +F A ++ + +GYF G
Sbjct: 445 LLLEKSCISTKALRILKNNTGPTTIWNHFKPG---KEFWAADVTRRELDCSGYFTTDEPG 501
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDG 559
W + LE +D+ S+ G L +L L L+ ++L G+ Y + L +DG
Sbjct: 502 GKEVWPENLEKARDNDLLMSSFGALTQYLRTLKLERNLLTQGNFTWYNPIQKGTTLVLDG 561
Query: 560 QTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
QTL L+ CVT GKR+ R W+CHPL D IN RLD V+
Sbjct: 562 QTLINLEIFANTFDGSTDGTLFALLNRCVTPFGKRMFRQWVCHPLADASKINERLDAVDM 621
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ + + + ++PDLERL+ R+ A V V L G + ++ + + G+
Sbjct: 622 INADRSLSDQFISSMTRMPDLERLISRIHAGVCKPDDFVRVLDGFEQIEYTMSLLGAFGG 681
Query: 660 GLRIAMDLLMLMHKEGHIIPSLSRIFK--PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
G I L+ M P LS K FD S + L E I+ +F + Q++
Sbjct: 682 GAGIVDRLINAM-------PDLSEPLKWWKTAFDRSKAREYKLLVPERGIEEEFDESQDN 734
Query: 718 DVTDLDAETLSIL 730
+ +++A ++L
Sbjct: 735 -IAEVEAALQTLL 746
>gi|195495129|ref|XP_002095136.1| GE19856 [Drosophila yakuba]
gi|194181237|gb|EDW94848.1| GE19856 [Drosophila yakuba]
Length = 1190
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 175/303 (57%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL S A A + P ++ ++ P ++ + G
Sbjct: 872 LFEKFSNYYDQWKQCIDCVANLDVLCSLAEYAGQQM-VICVPELVSGTEQPFIQLEEG-- 928
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+HP N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 929 -------YHPCV---NASTYIPNGLELGTASEAPLS---LLTGPNMGGKSTLMREVGLLV 975
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 976 IMAQIGAHIPATTCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1035
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F +TL HMAC
Sbjct: 1036 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHDDKRITLGHMACMV 1094
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1095 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQ 1153
Query: 1025 KSI 1027
+ I
Sbjct: 1154 RKI 1156
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 162/547 (29%), Positives = 238/547 (43%), Gaps = 85/547 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI D +RRPD P YDK TL++P L +S +Q+W +KS D +LFFK
Sbjct: 224 KLEFLQPDKIMDKQKRRPDHPDYDKSTLHVPENFLNGLSPGVRQWWVLKSSNYDCVLFFK 283
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA++G EL + G+ G E D L+ RG+KV R+EQ
Sbjct: 284 VGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILIDRGFKVARVEQ 340
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + KA + V++R++ + T V G+ IGP+ ++LAI E
Sbjct: 341 TETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEQ- 399
Query: 401 CGPDNGS-VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
D G+ YG F+D + +G DD +C+ L LL P ++ E L + +
Sbjct: 400 ---DEGTWSRYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLLSHHMPVLLLNEKSALSQRS 456
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS---KALENVMQ 516
Q+ +R G E P +K L + NG+ W + +++ M
Sbjct: 457 QQIVRTV-LGGILKEQVPGNGNQACSAEKTLKLLAERYYAGNGADDNWPLVLRTMQSDMD 515
Query: 517 H---------DIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY------------- 551
H + ALG I + + L+ +LP Y++Y
Sbjct: 516 HLGLTPNDNYKLALKALGQCIFFIHKCKLEP-----KVLPMARYQLYVPPDQLEDAKPAV 570
Query: 552 -----RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
R + +D TL LD C T GKRLL W+C P DV I
Sbjct: 571 ASTLRRSHMVLDATTLSNLRIIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVAVIKE 630
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG--------RVKARVQASSCIVLPLIGK 644
R D + LM+ + + V L +PDLER L R+K S +L K
Sbjct: 631 RQDAIGELMRMTSELQEVRALLAPMPDLERNLAQIHLFGNKRIKQMDHPDSRAIL-FEEK 689
Query: 645 KVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQF 703
KQ++ F +++KG L + H+ + L RI + P +G+ L K L F
Sbjct: 690 IYNKQKLLGFMAVLKGFNALTKLPTMFHQCETAL--LRRITQLPESEGTFPDLSKELQYF 747
Query: 704 EAAIDSD 710
A D D
Sbjct: 748 ATAFDHD 754
>gi|255728741|ref|XP_002549296.1| hypothetical protein CTRG_03593 [Candida tropicalis MYA-3404]
gi|240133612|gb|EER33168.1| hypothetical protein CTRG_03593 [Candida tropicalis MYA-3404]
Length = 1222
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/441 (35%), Positives = 229/441 (51%), Gaps = 41/441 (9%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
E + ++EWL IRDA +R DDP YD RTLYIP A K + +KQYW +KS+ +
Sbjct: 282 EKENEERYEWL--VNIRDAEKRTVDDPEYDPRTLYIPQSAWSKFTNFEKQYWGIKSKMWN 339
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
++FF+ GKFYELYE DA I + + D KI G + GI E + ++ ++ GYK
Sbjct: 340 TVVFFQKGKFYELYENDAIIANTKFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYK 399
Query: 347 VGRIEQLETSEQAKAR----HTNSVISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGN 400
V +++Q E+ + R +I R+L ++T T D I D + + L+IKE
Sbjct: 400 VAKVDQKESLLAKEMRGGTTKEEKIIKRELTGILTGGTLTDLNMITNDMSTYCLSIKEEE 459
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
++G+ V+G AFVD A + + DDA C L L+ QV PKEVI E LC+ A
Sbjct: 460 N--EDGTKVFGVAFVDTATSELNFIELQDDAECTKLDTLITQVKPKEVICEKGNLCQIAN 517
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSSSPWSKALENVM---- 515
K L KF A S +T+F D + +++LV+ Y +SK E ++
Sbjct: 518 KIL-KFCAHSENQIWNILNPITEFWDYDNTIEELVKSKYYEAEDLDDYSKYPEILVTYKD 576
Query: 516 QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL--------- 562
H + FSA GGL+ +L L LD ++ G+I Y++ ++ + +DG TL
Sbjct: 577 NHPLAFSAFGGLLYYLKLLKLDSSIMSLGNIHEYQISKNANNHMILDGITLNNLEILHNT 636
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVV 610
L+ TS GKRLL+ WI HPL ++ IN R D V++ M + E+ +
Sbjct: 637 ADGSDKGTLFKLLNRATTSFGKRLLQQWILHPLYKIDEINARYDSVDFFMNDGLELRSAI 696
Query: 611 AQYLRKLPDLERLLGRVKARV 631
L LPDLERLL RV A+
Sbjct: 697 QDVLFTLPDLERLLARVHAKT 717
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 157/317 (49%), Gaps = 34/317 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F W VI +I ID L + + RP + +K
Sbjct: 889 MFEKFDAHYQTWMGVIRSIGNIDCLLALTKASESMGFPSCRPSFIDAAKG---------- 938
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ K L HP G +PND+ LG + P LLTG N GKSTL+R T LAV
Sbjct: 939 CVDFKELRHPCFEGTKEF--IPNDVQLGGSN----PHFGLLTGANAAGKSTLMRTTALAV 992
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+L+Q+GC +P E L+ D I TRLGA D IM G+STF VE +ET +L AT SLVI
Sbjct: 993 MLSQIGCHIPAESAKLTPVDRIMTRLGANDNIMQGKSTFFVELSETKKILSNATPKSLVI 1052
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRG S+ DG++IA +V L + FATHY L F +HP + M
Sbjct: 1053 LDELGRGGSSSDGFSIAESVLHHLATHLQSLGFFATHYGTLGLSFKTHPQIKQLRMGIVV 1112
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+NS N + FLY+L G P S+G+ VA M G+P+++V+ A AA
Sbjct: 1113 DNNSRN-------ITFLYKLEEGTAPRSFGMNVAAMCGIPEEIVDNAERAA--------- 1156
Query: 1030 SFKSSEQRSEFSSLHEE 1046
EQ S+ L EE
Sbjct: 1157 --NEYEQTSKLKKLAEE 1171
>gi|294892329|ref|XP_002774009.1| DNA mismatch repair protein mutS, putative [Perkinsus marinus ATCC
50983]
gi|239879213|gb|EER05825.1| DNA mismatch repair protein mutS, putative [Perkinsus marinus ATCC
50983]
Length = 943
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 180/304 (59%), Gaps = 21/304 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
++ L + F + + +++ ++ +D L S + + +G+M RP IL ++ A
Sbjct: 633 MAQLFKDFHKHTIRLQDMVQRLATLDCLLSLSEASRPGAGSMCRPQILDPTEFTA----- 687
Query: 787 GGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
PV + HP AL +G VPN + +G + P TLL+TGPNMGGKST+LR
Sbjct: 688 --PVFDLVDGRHPVQEAALARSGREFVPNSVEMGINGS---PTTLLVTGPNMGGKSTVLR 742
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ AVI+AQLGC VP L+ D IFTR+GA D I+ +STFL+E ET +VLQ AT
Sbjct: 743 LSATAVIIAQLGCRVPASSFKLTPVDRIFTRIGARDSILENKSTFLIELEETGAVLQHAT 802
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+ SL ++DELGRGTSTFDG AIA+AV ++ E I CR LFATHYH L ++ H + L
Sbjct: 803 KHSLAVIDELGRGTSTFDGAAIAHAVLERISESIGCRTLFATHYHQLAEDEGLH-NTALY 861
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
H AC + +E+ FLY+ T G CP+S+ + VA +AG+P+ +VEAA +
Sbjct: 862 HQACLVNPAT-------REVTFLYKFTKGRCPQSHAMHVAKIAGLPEVIVEAAREMSTVF 914
Query: 1024 KKSI 1027
++
Sbjct: 915 HSAV 918
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/444 (26%), Positives = 186/444 (41%), Gaps = 57/444 (12%)
Query: 217 SVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQ 276
S+AG C S W+ P + D RRPD P YD+ T+ +P + Q
Sbjct: 18 SIAGSNICR-----YSYPSWMHPDNLADEKGRRPDHPDYDQSTMKVPDLREGHCTPMLLQ 72
Query: 277 YWNVKSQYMDVLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGID 334
YW VK+++ D + FKVGKFYE++ DA L W G K VG E +
Sbjct: 73 YWEVKAKHFDEITLFKVGKFYEIFYYDAVFAQAACNLRWM----GNNKKPHVGFPEVSLY 128
Query: 335 DAVEKLVARGYKVGRIEQLE---TSEQAKARHTNSVISRKLVNVVTPSTTVDGTI----- 386
+ LV G++ +EQ+E + + R +++V+ R+ T T +
Sbjct: 129 EYSSVLVNAGFRTVVVEQVERVGEMNKGQGRKSDAVVKREACQAHTAGTLTHEVMLKNSP 188
Query: 387 ---GPDAVHLLAIKEGNCGPD--NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
P+ + L +G P + +G VDC G D L +L+
Sbjct: 189 SPAQPNYLMALWFSDGCTHPGALGDRLSFGCCVVDCTTSTFKYGWFEDKPDRQLLRTILI 248
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVKKLVQ---- 495
+ P+E++ + + + + L+ + + T+ D S+ VQ
Sbjct: 249 TLQPRELLADKKSIPTAVHRLLQGLAVPPTVTQWHHWDPNTEHGRQDESDEPLPVQKACG 308
Query: 496 -LNGYFN--------GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDIL 546
+ Y S + W K D + GL+ + L +VLRN D
Sbjct: 309 AVLAYLRQTMLYEAVTSFATWEKL-------DTSNAGSSGLVLDANALEQLEVLRNTDG- 360
Query: 547 PYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
+++G L LD VT GKRLLR W+C PL+ + RLDVV++L++ +E
Sbjct: 361 ---------KLEGSLLNQLDHTVTPFGKRLLRQWVCCPLRAKTDTDRRLDVVDWLLERTE 411
Query: 606 VVMVVAQYLRKLPDLERLLGRVKA 629
+V + +RKLPD+ER RV A
Sbjct: 412 LVADLRSRMRKLPDIERRQNRVFA 435
>gi|308198192|ref|XP_001387139.2| Mismatch repair ATPase MSH6 (MutS family) [Scheffersomyces stipitis
CBS 6054]
gi|149389076|gb|EAZ63116.2| Mismatch repair ATPase MSH6 (MutS family) [Scheffersomyces stipitis
CBS 6054]
Length = 1212
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 226/448 (50%), Gaps = 48/448 (10%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
KN +E + +++WL +RDA +R DDP YD RTL++P A K +A +KQYW +K
Sbjct: 271 KNFSKENE--ERYQWL--VDVRDAEKRTTDDPNYDPRTLHVPQSAWSKFTAFEKQYWEIK 326
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
S+ + ++FFK GKFYELYE DA I + E D KI G + GI E + ++ +
Sbjct: 327 SKMYNTVVFFKKGKFYELYENDATIANTEFDLKIAGGGRANMKLAGIPEMSFEYWAKEFI 386
Query: 342 ARGYKVGRIEQLETSEQAKAR----HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLA 395
+ GYKV +++Q+E+ + R +I R+L V+T T D + D AV+ L+
Sbjct: 387 SHGYKVAKVDQVESLLAKEMRGGGTKEEKIIKRELTGVLTGGTLTDMDMISDDMAVYCLS 446
Query: 396 IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
+KE D+GS ++G FVD A V DDA C L L+ Q+ PKE++ L
Sbjct: 447 VKEEIL--DDGSKIFGVVFVDTATSEVNFIEFPDDAECTKLETLITQIKPKEILCMKGNL 504
Query: 456 CKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSSSPWSKALE 512
C A K L KF+A + +L P +++F D + + LV Y +S
Sbjct: 505 CSIAVKIL-KFNAQGHQIWNQLNP---ISEFWDYDTTCENLVSAKYYDAEDLDDYSNYPP 560
Query: 513 NVM----QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL-- 562
++ H + F A GGL+ +L L LD ++ G I Y++ ++ + +DG TL
Sbjct: 561 TLIDYKDNHKVAFGAFGGLLFYLRSLKLDSSIMTLGHISEYQISKNSSTHMLLDGITLNN 620
Query: 563 ------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
++ T GKR ++S + HPL + IN R D +EYLM
Sbjct: 621 LEILSNSFDGGDKGTLFKLINKASTPFGKRAMKSLVLHPLMKINEINERYDAIEYLMNEG 680
Query: 605 -EVVMVVAQYLRKLPDLERLLGRVKARV 631
E+ + Q L LPDLERLL R+ ++
Sbjct: 681 LELRSKLEQTLTSLPDLERLLARIHSKT 708
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 158/318 (49%), Gaps = 34/318 (10%)
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
S + E F W + +H++ ID + + T+ RP + K
Sbjct: 880 SRMYERFDAHYKTWLKAVHSLGKIDCILALTRTSETIGYPSCRPEFVDSEKGQ------- 932
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
++ + L HP L + +PND++LG + LLTG N GKSTL+R T L
Sbjct: 933 ---IEFRELRHPCFLASSDF--IPNDVILGGSEANFG----LLTGANAAGKSTLMRTTAL 983
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVILAQ+GCFVP LS D I TRLGA D IM G+STF VE +ET ++ AT SL
Sbjct: 984 AVILAQIGCFVPASSAKLSTVDKIMTRLGANDNIMQGKSTFFVELSETKKIISNATTRSL 1043
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDELGRG S+ DG+AIA + L I FA HY L F +HP + MA
Sbjct: 1044 VILDELGRGGSSSDGFAIAESTLHHLATHIQPLGFFAIHYGTLGLSFQNHPQIKPLRMAI 1103
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+NS N + FLY+L G P S+G+ VA M G+ +V++A AA
Sbjct: 1104 IIDNNSRN-------ITFLYKLEEGTAPGSFGMNVASMCGIANTIVDSAEVAA------- 1149
Query: 1028 GESFKSSEQRSEFSSLHE 1045
K EQ S+ H+
Sbjct: 1150 ----KEYEQTSKLKKTHK 1163
>gi|195126507|ref|XP_002007712.1| GI12236 [Drosophila mojavensis]
gi|193919321|gb|EDW18188.1| GI12236 [Drosophila mojavensis]
Length = 1189
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 177/303 (58%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL A ++ A + +I P + P
Sbjct: 871 LFEKFSNHYEQWKQCIDCVATLDVL------AGLAEYARQQLVICV----PELVSGQAQP 920
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++++ +HP A N +PN + LG +++ L LLTGPNMGGKSTL+R L V
Sbjct: 921 FIELEEGYHPCA---NPSTYIPNGLQLGTETEAPLS---LLTGPNMGGKSTLMRQLGLLV 974
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT +SLV+
Sbjct: 975 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATPNSLVL 1034
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F +TL HMAC
Sbjct: 1035 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHMDKRITLGHMACMV 1093
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+P +++ A A+A++
Sbjct: 1094 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPHGIIKRAYELSKKVEAIALQ 1152
Query: 1025 KSI 1027
+ I
Sbjct: 1153 RKI 1155
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 154/551 (27%), Positives = 246/551 (44%), Gaps = 90/551 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K ++L P KI+D RRPD P YDK TL++P + L +S + +Q+W +K+ D +LFFK
Sbjct: 220 KLDFLQPDKIKDKAGRRPDHPEYDKSTLHVPEKFLNTLSPAMRQWWVLKADNFDCVLFFK 279
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY DA++G EL + G+ G E D LV RGYKV R+EQ
Sbjct: 280 VGKFYELYHGDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSSILVDRGYKVARVEQ 336
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + K+ + V++R++ + T V G+ IGP+ ++LAI E +
Sbjct: 337 TETPDMMTERCKRIKSTKYDKVVAREICQITDRGTQVFGSQCAIGPNHQPNYMLAIVEQD 396
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G S YG F+D + VG +DD SC+ L L+ P +++E L Q
Sbjct: 397 EG---TSSKYGICFIDTSIGDFHVGEFDDDKSCSRLLTLISHNMPVLLLHEKAALSSRTQ 453
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWS---KALENVMQ 516
+ LR G +L P A + A + KL+ Y G+ W + +++ M
Sbjct: 454 QILRTVLGGIQKEQL-PG-AGSQLCSAEKTLKLLAERYYAGTGNEDNWPLVLRTMQSDMD 511
Query: 517 H---------DIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY------------- 551
H + ALG I ++++ L+ +LP Y++Y
Sbjct: 512 HLGLTPADPYKLALKALGQCIHYIAKCKLEP-----KVLPMARYQLYVPPDEQQEETARP 566
Query: 552 --------RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEG 589
R + +D TL LD C T GKRLL W+C P D+
Sbjct: 567 KLTSTPLQRSHMVLDATTLSNLRIVGEEHSLQSTLDHCCTKFGKRLLHHWLCAPSCDLTV 626
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK-------ARVQASSCIVLPLI 642
+ R + + L++ + + + L +PD ER L ++ + + +
Sbjct: 627 LRERQEAIGELLRQPDELQQLRALLAPMPDFERHLAQIHLFGNKYIGQTEHPDSRAILFE 686
Query: 643 GKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK-EGHIIPSLSRIFKPPIFDGSD--GLDKF 699
K KQ+++ F S++KG M L + + E ++ L+++ +G + L K
Sbjct: 687 EKLYNKQKLRSFMSILKGFETLMQLPEMFQRCESTLLRRLTQLSA----NGGNYPDLSKQ 742
Query: 700 LTQFEAAIDSD 710
L FE A D +
Sbjct: 743 LKFFENAFDHE 753
>gi|254578938|ref|XP_002495455.1| ZYRO0B11792p [Zygosaccharomyces rouxii]
gi|238938345|emb|CAR26522.1| ZYRO0B11792p [Zygosaccharomyces rouxii]
Length = 1210
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/443 (32%), Positives = 220/443 (49%), Gaps = 56/443 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL +RDA RR DDP YD RTLYIP A K + +KQYW +KS D ++FFK
Sbjct: 248 RYQWL--VDVRDAQRRPKDDPEYDPRTLYIPSSAWSKFTPFEKQYWEIKSSMWDCIVFFK 305
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + DW+I G + GI E D + + GYKV +++Q
Sbjct: 306 KGKFFELYEKDAALANNLFDWRIAGGGRANMQLAGIPEMSFDYWASQFIQYGYKVAKVDQ 365
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKE--GNC-----G 402
E+ + R + ++ R+L V+T T DG + A + LA++E GN G
Sbjct: 366 RESMLAKEMREGSKGIVQRELQCVLTSGTLTDGNMLQSDLATYCLAVREESGNYYDLENG 425
Query: 403 PD----NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
D G ++G AF+D + + + +DD C L ++ Q++PKEVI E L
Sbjct: 426 QDLTETAGKRIFGVAFIDTSTGEIELIEFDDDNECTKLDTIMSQLTPKEVIMEKSNLSNL 485
Query: 459 AQKALRKFSAGSAALE-LTPAMAVTDF------LDASEVKKLVQLNGYFNGSSSPWSKAL 511
A K ++ +A +A + P DF L +SE K +N W L
Sbjct: 486 AHKIVKYNAAPNAIFNYVKPLEEFYDFERTFDELTSSEHKYFPDMNH--------WPLVL 537
Query: 512 ENVMQ--HDIGFSALGGLISHLSRLMLDDVLRN-GDILPYKVYR--DCLRMDGQTL---- 562
+ + IGFSA GGL+ +L L LD+ L + G+I Y + + L +DG TL
Sbjct: 538 KTYYEKGKKIGFSAFGGLLHYLKWLKLDESLISIGNIREYNPIKSQNSLVLDGVTLQNLE 597
Query: 563 ----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
+ +T GKR+++ W+ HPL I RLD V+ L+ ++++
Sbjct: 598 IFTNSFDGTDKGTLFKLFNKALTPMGKRMMKRWLMHPLLHRSDIEKRLDTVDCLLSDTDL 657
Query: 607 VMVVAQYLRKLPDLERLLGRVKA 629
++ L KLPDLERL+ RV +
Sbjct: 658 RDLLETALSKLPDLERLVARVHS 680
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 158/284 (55%), Gaps = 15/284 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S W IHAIS ID L + T+ RP ++ + NG +K K L H
Sbjct: 865 SSWLPTIHAISNIDCLLALVRTSESLGFPSCRPEVVDEKDLETGIAQNG--FVKFKSLRH 922
Query: 799 P-FALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
P F LG N +PND+ LG++ P+ LLTG N GKST+LR TC+AVI+AQ+GC
Sbjct: 923 PCFNLGTTNPKEFIPNDVELGKN----FPQIGLLTGANAAGKSTILRMTCIAVIMAQMGC 978
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VPCE V++ D I TRLGA D IM G+STF VE +ET ++ AT SL++LDELGRG
Sbjct: 979 YVPCESAVMTPMDKIMTRLGANDNIMQGKSTFFVELSETKKIMDLATNRSLLVLDELGRG 1038
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA AV FATHY L F +H + M N+
Sbjct: 1039 GSSSDGFAIAEAVLHHAATHTQSLGFFATHYATLGHSFENHSMIRPLRMGILVDENT--- 1095
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+++ FLY+L G S+G+ VA M G+P++VV+ A AA
Sbjct: 1096 ----RKVTFLYKLEEGQSEGSFGMHVASMCGIPKEVVDNAQVAA 1135
>gi|389584278|dbj|GAB67011.1| DNA repair protein [Plasmodium cynomolgi strain B]
Length = 1282
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 206/378 (54%), Gaps = 62/378 (16%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP--------- 780
+ LF ++ ++ +D L++FA A + A+ RP++ P +N
Sbjct: 922 MFHLFYAHYEKYVSACRLVAELDCLQAFAFVALNTPFALTRPVLHPMRRNENAGEISQDT 981
Query: 781 -AVRQDNG-------------GPVLKIKG--LWHPFALGENGGLPV---------PNDIL 815
+ QD G G V + +G + PF + EN PV N+I
Sbjct: 982 GEISQDTGEISHDTGEISQDTGEVSETRGSSVSEPFLILENNIHPVVATLMPNFISNNIY 1041
Query: 816 LGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRL 875
+G ++ TLLLTGPNMGGKSTLLR T ++VILAQ+G FVP C L++ D IFTRL
Sbjct: 1042 MGCKQEN--QSTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRL 1099
Query: 876 GATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE 935
G++D + G+STFLVE + +++L+++T+ SL ILDELGRGTS+FDG AIA + Q+ +
Sbjct: 1100 GSSDNLFEGKSTFLVELEDISNMLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISD 1159
Query: 936 RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACP 995
+ CR +F+THYH L +E + ++ HM+ + + E +++FLY+ G CP
Sbjct: 1160 VLKCRCIFSTHYHLLVEEVKHNKKISNYHMSLSIDDHQE-------KIIFLYKFIKGVCP 1212
Query: 996 ESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTI--VN 1053
+S+G+ +A +AG+P+++++ A E+ + F ++ +E+ K I N
Sbjct: 1213 KSFGIHIAKLAGLPKEIIDLA-----------------HEKSTLFENVTDEFCKIIKYKN 1255
Query: 1054 VSRVDCNSDDDDAYDTLF 1071
+ R ++ DD+ LF
Sbjct: 1256 IVRSLLSAPDDENLGALF 1273
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 139/490 (28%), Positives = 230/490 (46%), Gaps = 73/490 (14%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPE----ALKKMSA----SQKQYWNVKSQYMD 286
+W+ P IRD N R PD+ YD T++ PP A++ A +Q+W +KS+ D
Sbjct: 286 KWVQPQYIRDLNLRTPDNADYDCSTIWTPPPDHPWAVEYKQAHYTPGMQQFWKIKSKNFD 345
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA + H L+W + G K +G E + +K++ G
Sbjct: 346 KIIFFKMGRFYEIFYIDACLMHTICGLNW---MGGEQK-PHLGFPEQSLHMYAKKVINCG 401
Query: 345 YKVGRIEQLETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPDAVHLLA-- 395
+KV IEQ+ET ++ + R+ S I R++ + T T + D + + +L+
Sbjct: 402 HKVVVIEQMETPKELEQRNKESCGPKDKAIKREINEIFTKGTILHDNMLSSETRYLVCFH 461
Query: 396 ------IKEGNCGPDNG--------SVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ +G NG +GF D A + VG DD S L +L
Sbjct: 462 FDDIEDVDDGVVDAGNGVNERPFRSKCNFGFVVSDIATSYIAVGYCKDDESRIELRTILA 521
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
Q+ P E++Y ++ + KE L F A ELT AV+ F + + L ++ YF
Sbjct: 522 QLCPAEILYASKNINKEV---LSIFKNIPAEPELT---AVSSFPNI--IASLDEIRKYF- 572
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYR--DCLRMD 558
P LE + + A GG I +L L+LD + R I Y +++ + + +D
Sbjct: 573 ---EPIPPILEMHKEQNSVICAFGGFIVYLRSLLLDKKIFRFCKIEHYDLFKRENYMVLD 629
Query: 559 GQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
L Y++ T+ G R +R WIC PL D IN RLDVVE+
Sbjct: 630 ATALKHLEILETQSGETKNSLFDYVNKTCTNFGARNMRRWICSPLLDCTKINERLDVVEF 689
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
L KN ++ ++ L+KLPD+ERLL ++ +QAS + ++ ++K F + +
Sbjct: 690 LKKNEHILSMIRLKLKKLPDIERLLNKI--CIQASQSERGAVFFDNIVSTKLKEFMTFLN 747
Query: 660 GLRIAMDLLM 669
+ +L+
Sbjct: 748 AFKEIGSMLI 757
>gi|260943291|ref|XP_002615944.1| hypothetical protein CLUG_04826 [Clavispora lusitaniae ATCC 42720]
gi|238851234|gb|EEQ40698.1| hypothetical protein CLUG_04826 [Clavispora lusitaniae ATCC 42720]
Length = 1320
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 145/441 (32%), Positives = 224/441 (50%), Gaps = 41/441 (9%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
E + +++WL I+DA +R PDDP YD RTLYIP A K +A +KQYW +K + D
Sbjct: 380 EKENEERYQWL--VNIKDAEKRSPDDPNYDPRTLYIPSSAWTKFTAFEKQYWEIKGKMWD 437
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
++FFK GKFYELYE DA I + E D KI G + GI E + ++ ++ GYK
Sbjct: 438 TVVFFKKGKFYELYENDATIANTEFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYK 497
Query: 347 VGRIEQLETSEQAKARHTNS----VISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGN 400
V +++Q+E+ + R S +I R+L V+T T D + D A + LAIKE
Sbjct: 498 VAKVDQVESLLAKEMRGGGSKEEKIIRRELTGVLTGGTLTDLDMISDDMATYCLAIKEST 557
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G V+G FVD A + + DD C L L+ Q+ PKE++ E LC A
Sbjct: 558 T--QEGEKVFGACFVDTATSEMNFIELVDDDECTKLDTLITQIKPKEILCEKNNLCSTAT 615
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSSSPWSKA----LENVM 515
K + KF+A ++ ++F D + V+ LV+ Y ++K L+
Sbjct: 616 KII-KFNAHNSHQIWNNLNPYSEFWDYDTAVENLVKGKYYEAEDLDDYAKYPPVLLKYKD 674
Query: 516 QHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYRDC---LRMDGQTL--------- 562
H + F+A G L+ +L L LD+ ++ G+I Y + ++ + +DG TL
Sbjct: 675 NHPVAFNAFGALLYYLRTLKLDESIMSLGNIKEYHISKNSSKHMLLDGITLTNLEMFNNN 734
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVV 610
++ +T GKR L++W HPL ++ IN R D +++LM + E+ + +
Sbjct: 735 FDGGDRGTLFKLVNRAITPFGKRTLKNWTLHPLMQIDDINARYDAIDFLMNDEPELRVEM 794
Query: 611 AQYLRKLPDLERLLGRVKARV 631
L L DLERL+ RV ++
Sbjct: 795 ESSLSSLSDLERLIARVHSKT 815
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 156/306 (50%), Gaps = 34/306 (11%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W +VI + ID L + T+ RP + + L L HP
Sbjct: 999 WVQVIKTVGNIDCLIALTKTSETIGYPSCRPKFVSGTSG----------ALSFSELRHPC 1048
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+G N +PND+ LG + + LLTG N GKSTL+R T LAVIL+Q+GC++P
Sbjct: 1049 FVGANDF--IPNDVKLGGEYANFG----LLTGANAAGKSTLMRTTALAVILSQIGCYLPA 1102
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
VL+ D I TRLGA D IM G+STF VE +ET +L AT +SLVILDELGRG S+
Sbjct: 1103 SEAVLTPIDKIMTRLGANDNIMQGKSTFFVELSETKKILSNATSNSLVILDELGRGGSSS 1162
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DGYAIA +V L + FATHY L F +HP + M S N
Sbjct: 1163 DGYAIAESVLHHLASHVQPLGFFATHYGSLGLSFINHPQIRPLRMGIVVDQTSRN----- 1217
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEF 1040
+ FLY+L G P S+G+ VA M G+P ++VE A AA K EQ S+
Sbjct: 1218 --ITFLYKLEDGCAPGSFGMNVAAMCGIPTEIVEKAEGAA-----------KEYEQTSKL 1264
Query: 1041 SSLHEE 1046
+HE+
Sbjct: 1265 KDMHEK 1270
>gi|145348063|ref|XP_001418476.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578705|gb|ABO96769.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1113
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 167/288 (57%), Gaps = 17/288 (5%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTAS---MSSGAMHRPLILPQSKNPAVRQDN 786
++ F E AS+W + IDVL S AV + S GA+ P + PQ + D
Sbjct: 777 IVAKFCENASEWQAAASVGAIIDVLASLAVVSEEMYASCGAVCTPKVHPQPR------DG 830
Query: 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
L+ GL HP A VPND LG P L+TGPNMGGKST LR C
Sbjct: 831 EPATLESVGLSHPCASSLARAF-VPNDARLGGKH----PGFCLITGPNMGGKSTYLRQVC 885
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
LA I+A +G VP ++ D +F R+GA D + G+STF+VE +ET ++L++AT +S
Sbjct: 886 LAAIMAHVGADVPAAKFEMTAMDAVFVRMGAKDNLAGGQSTFMVELSETGAMLRRATTNS 945
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
LV LDELGRGT+T DG AIA AV L+++ CR LF+THYH L + A PHV L HMA
Sbjct: 946 LVALDELGRGTATADGTAIACAVASHLIDK-RCRTLFSTHYHRLADDHARDPHVALAHMA 1004
Query: 967 CAFK--SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
C + S + + G + + FLY L SG CP SYG+ VA +AG+P+ V
Sbjct: 1005 CRVETPSGAGVETLGRETVTFLYTLASGNCPRSYGVNVARLAGLPESV 1052
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 136/474 (28%), Positives = 207/474 (43%), Gaps = 75/474 (15%)
Query: 215 QDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSAS- 273
QD +AGV + +A KF ++ P KI+DA+ RRPDDP YD TL +P K AS
Sbjct: 101 QDVLAGVGPEQYDARDRLKFPFMQPEKIKDADGRRPDDPDYDPSTLLLPSTFPKMRDASG 160
Query: 274 --------QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
Q Q+W K+ D +L FK+GKFYE++E+DA IG ++L + G+
Sbjct: 161 VQWTVSPGQAQWWKFKAANFDSVLLFKMGKFYEMFEMDAHIGVRDLG---LMYMRGEQPH 217
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR------HTNSVISRKLVNVVTPS 379
G E E+L G++V IEQ ET Q R ++V+ R++V V+T
Sbjct: 218 AGFPEKNYAMHAEQLARNGHRVVCIEQTETPAQLAERKKKDKTCKDTVVRREMVQVLTKG 277
Query: 380 TTVDGTI---GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
T VD + PDA + +I +G C ++G G DC R VG DD + L
Sbjct: 278 TMVDTGMLNSSPDAAFVCSIIDG-CEEEDGEGWVGLCAADCGTGRFLVGAWRDDEGASCL 336
Query: 437 GALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVKKLV 494
L ++ P E++ GL A+ A+ L++ F A+E +
Sbjct: 337 RTALAELRPVEILVPPTGLSARAKMAV---------LDMCSHAQQRTFKSTSANEALEDA 387
Query: 495 QLNGYFNGSSSPWSKALENVMQ------HDIGFSALGGLISHLSRLMLD-DVLRNGDI-- 545
+ GYF + +A++ + + G A G ++++L ++D D++ G +
Sbjct: 388 EAEGYFKTLKTGLPEAIKEMRDTACHPARECGIGAWGTVVAYLRAALIDADLVPQGRVES 447
Query: 546 -----------LPYKVYRDCLRMDGQTL-------------------YLDSCVTSSGKRL 575
L + + MD L LD CV+ G+RL
Sbjct: 448 LHTTDAGAREHLARWAHSTHVAMDAAALSGLEVLENTAGGSAGTLLASLDRCVSGPGRRL 507
Query: 576 LRSWICHPLKDVEGINNRLDVVEYLMKNS--EVVMVVAQYLRKLPDLERLLGRV 627
LR W+C PL I R V +M+ E + + LR PD ER + RV
Sbjct: 508 LRRWVCRPLTSASAIRAR-QVAVSMMRGCGIEATGIARKLLRAAPDAERAISRV 560
>gi|340502546|gb|EGR29225.1| hypothetical protein IMG5_160240 [Ichthyophthirius multifiliis]
Length = 1077
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 163/275 (59%), Gaps = 22/275 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFA-VTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLK 792
F + W +H ++ +D L S + V+ +++ G M RP I+ ++ P +K
Sbjct: 808 FYQMHKTWDSFLHILAELDCLCSLSLVSFTLADGIMARPQII---------KNQNSPFIK 858
Query: 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPR----TLLLTGPNMGGKSTLLRATCLA 848
+K HP L G + ND+ +G+ + P+ +LLTGPNMGGKST LR TC+A
Sbjct: 859 LKQARHP-CLSSLGIKFISNDVFIGDINQTGEPKDQKNLILLTGPNMGGKSTTLRMTCIA 917
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
IL Q+GC+VP + S+ D IFTRLGA+D++M G+STF +E ET + + K + +SLV
Sbjct: 918 TILGQIGCYVPAQEAQFSVVDRIFTRLGASDKLMEGKSTFYIEMEETFNAVAKGSINSLV 977
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
I+DELGRGTST DGY+IAY++ R +VE + CR +FATHYH L EF + + HMAC
Sbjct: 978 IMDELGRGTSTHDGYSIAYSIIRYIVEHMKCRCIFATHYHSLIDEFRLYYQIDFYHMACF 1037
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
N ++VFLY+L +S+ + VA
Sbjct: 1038 VDQNLG-------KVVFLYKLKKEEFQQSFAMNVA 1065
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/489 (28%), Positives = 232/489 (47%), Gaps = 64/489 (13%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQY 284
E+ DTT W P RD R+ D P YD TLYIPP+ KK++ +QYW +KS+
Sbjct: 181 EQLRDTTPL--WALPENARDKQMRKKDHPNYDPTTLYIPPDDFKKLTICMQQYWTIKSEN 238
Query: 285 MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
D ++ FK+GKFYEL+ DA I +KELD L+ +G G E +D KLV RG
Sbjct: 239 FDKIVLFKLGKFYELFYEDALISNKELD----LNWMGDKMHTGFPEKALDRMASKLVERG 294
Query: 345 YKVGRIEQLETSEQAKARHTNSV----ISRKLVNVVTPSTT-VDGTIGPDAVHLLAIKEG 399
YKV EQ ET+++ + R N + I R+LV V+T T ++ D +L+ +K
Sbjct: 295 YKVAIAEQTETNQEMEKRLKNKIGQKCIQRELVQVMTKGTYDINQEGNYDPRYLVCLK-- 352
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
N + ++ ++ + I DD LL Q+ P+EV+++ + E
Sbjct: 353 -----NFKNYFCLCILEHTTNQITISFIQDDLHYTNFKTLLCQIKPQEVVFDPLLVNNEV 407
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM---- 515
+K L+ +G +L+P + + + + + + L++++
Sbjct: 408 KKILK---SGYLVPQLSPFPNKRNEWNKNAC--FSYFEQVYGQDKQLYPQVLQDLVNIRN 462
Query: 516 -QHDIGFSALGGLISHL-SRLMLDDVLRNG------DILPYK-VYRDCLRMDGQTL---- 562
++DI L GL S+L S L+ D++L DI V + + +D Q L
Sbjct: 463 EKNDIILETLSGLFSYLKSLLIFDEILYTARYQMQEDIHSQNSVLQQFMILDSQALQHLE 522
Query: 563 ---------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
Y++ + G R+L+ W+C PL D++ IN+RL+ +E L
Sbjct: 523 ILEPSAGFFSTKQAFDGSLLSYINKTRSPFGYRMLKKWVCAPLLDIQMINDRLNAIEDLQ 582
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV-KARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG 660
SE+ + L+K+PDLE++ GR+ K +++ + V+ ++ +K F L+
Sbjct: 583 NISEMRDYFQKELQKMPDLEKICGRIYKYQIKQAQKNVVQYEDFSTIR--LKEFRELLSN 640
Query: 661 LRIAMDLLM 669
+ + +L+M
Sbjct: 641 FQSSYNLIM 649
>gi|268564536|ref|XP_002639138.1| C. briggsae CBR-MSH-6 protein [Caenorhabditis briggsae]
Length = 1185
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 170/313 (54%), Gaps = 22/313 (7%)
Query: 711 FPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHR 770
F D + + L + + E F K W E + +S DVL S A + S M
Sbjct: 847 FLDIAEKEKSKLGDDATRRVFEQFGHKNPIWLETVQLVSKFDVLTSLATFSKSSPFDMTM 906
Query: 771 PLILPQSKNPAVRQDNGGPVLKIKGLWHP-FALGENGGLP-----VPNDILLGEDSDDCL 824
P +S P + + G HP AL + + N +G+
Sbjct: 907 PEFDFESAKPYLIVEKG---------LHPCLALQSRNEVTQTTSFIANSTTMGQTE---- 953
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
+LLTGPNMGGKSTL+R T + ILA +GC VP L+ D IFTR+GA DRIM G
Sbjct: 954 AAVMLLTGPNMGGKSTLMRQTAVLAILAHMGCMVPAFSMRLTPIDRIFTRIGANDRIMCG 1013
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
ESTF +E ET +L+ AT+ SL+++DELGRGTSTFDG AIA AV +++ + CR F+
Sbjct: 1014 ESTFFIELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKIANDLVCRTFFS 1073
Query: 945 THYHPLTKEFASHPHVTLQHMACAF-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
THYH + F +HP++ L HM C K N+E+ + D + FLY L SG CP+SYG A
Sbjct: 1074 THYHSICDSFTNHPNIRLAHMKCVVDKENNEDPTMED--VTFLYELESGICPKSYGFYAA 1131
Query: 1004 VMAGVPQKVVEAA 1016
+AG+ QKVV A
Sbjct: 1132 KLAGIDQKVVRVA 1144
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 231/521 (44%), Gaps = 82/521 (15%)
Query: 179 MHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFE--- 235
+ RV+P + + ++ + ++K +++ + D K +EE + T +F+
Sbjct: 153 VRRVIPEGEEV---SMAVVEEKIEKIMEGELERKKNVDKGGSKKKQQEEEEPTERFDHES 209
Query: 236 --WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
WL P KIRDA++R DP YD +TL++PP+ K + +Q+W +KSQ+ D ++ FKV
Sbjct: 210 LDWLKPDKIRDASKRAMSDPEYDPKTLWVPPDFHLKQTPGHRQWWTIKSQHFDTIILFKV 269
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYE Y +DA + L+ G G E ++L+ GYKV R+EQ
Sbjct: 270 GKFYETYHMDAVEVVRALNIAFMR---GSYAHAGFPEHAASKFADQLMNHGYKVARVEQT 326
Query: 354 ETSE-----QAKARHTNSVISRKLVNVVTPST----TVDG--------TIGPDAVHLLAI 396
ET + KA+ + V+ R++ V + T +DG T+ P A HLLAI
Sbjct: 327 ETPQMLEERNQKAKSKDKVVRREVCRVTSNGTRTYGVLDGVDLGSATSTLDPTAKHLLAI 386
Query: 397 KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
KE + + G YG +D + VG DD + L L V + + E +
Sbjct: 387 KEFH-NTETGKSTYGVCMIDTTTAHIRVGQFEDDDYRSQLRTLFANVIVVQTLVERSSMS 445
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM- 515
+ + L P FL A + + + + YF S W L+ ++
Sbjct: 446 VSTKSIINGILFSVPIEHLLPK---KQFLTAEDCVRDLSKDDYFGSEVSGWPDVLKLMLD 502
Query: 516 ----------QHDIGFSALGGLISHLSRLMLD-DVLRNGDIL--------PYKVYRDCLR 556
+ + FSA G ++ +L ++D D++ +I P K+ ++ +
Sbjct: 503 DSSVLPKPSSKWQLAFSAFGAIVWYLRDSLIDVDMISMRNITLYDSNNSKPEKINQEDDK 562
Query: 557 MD--GQTLYLD--------------------------SCVTSSGKRLLRSWICHPLKDVE 588
+D G+ L LD C T G+RLLRSW+ P D
Sbjct: 563 VDWKGKHLILDGTVLENLNIVPNGRDSHLTSLYYVLNKCSTPFGRRLLRSWLLQPTCDPA 622
Query: 589 GINNRLDVVEYLM-KNSEVVMVVA-QYLRKLPDLERLLGRV 627
+ R + +++++ ++E A L+K+PDL+RLL ++
Sbjct: 623 TLRLRQEAIKWMISSDAESFFSTAIATLKKIPDLDRLLQKI 663
>gi|67522503|ref|XP_659312.1| hypothetical protein AN1708.2 [Aspergillus nidulans FGSC A4]
gi|40745672|gb|EAA64828.1| hypothetical protein AN1708.2 [Aspergillus nidulans FGSC A4]
gi|259487049|tpe|CBF85409.1| TPA: protein required for mismatch repair in mitosis and meiosis
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 1186
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 150/468 (32%), Positives = 234/468 (50%), Gaps = 57/468 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + DP YD RTLYIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 256 RYPWL--ANIRDIDGHPIGDPEYDPRTLYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFK 313
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ ES +D + VA+G+K+ R++Q
Sbjct: 314 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPESSLDHWANQFVAKGFKIARVDQ 371
Query: 353 LETSEQAKARHTN---------SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
E++ + R + +I R+L V+T T V+G + D + +AIKE
Sbjct: 372 SESALGKEMRERDGKKGGGKEEKIIRRELACVLTAGTLVEGAMLQDDMSTFCVAIKEAII 431
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+G AFVD A + ++ DD + Q P+E++ E + ++A +
Sbjct: 432 ---ENLPAFGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQELLLEKSTVSQKALR 488
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQ 516
L+ + + L P +F +A + + + YF N + W +AL
Sbjct: 489 ILKNNTGPTTIWNYLKPG---KEFWEADITVRELDASEYFVSQDNDNIHAWPEALRQARD 545
Query: 517 HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL----------- 562
++ SA G L+ +L L L+ D++ G+ Y + L +DGQTL
Sbjct: 546 KELVMSAFGALVQYLRLLKLERDLITIGNFSWYDPIKKASSLVLDGQTLINMEIFANSFD 605
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L +S V A
Sbjct: 606 GGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQ 665
Query: 614 LRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK--QQVKVFGSLVK 659
L K+PDLERL+ +R+ A++C + +VL+ +Q++ SL+K
Sbjct: 666 LTKMPDLERLI----SRIHAANCRAQDFV--RVLEGFEQIEYTMSLLK 707
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 153/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + +S +D L S A +S RP + ++ VL+
Sbjct: 859 FDEHYSTWLSAVRVVSQLDCLISLAKASSSLGEPSCRPTFVEDERS----------VLEF 908
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP + +PNDI LG P LLTG N GKSTLLR TC+AVI+AQ
Sbjct: 909 EELRHPCLISSVDDF-IPNDIQLGGSG----PNIDLLTGANAAGKSTLLRMTCVAVIMAQ 963
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 964 VGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1023
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF +HP + + M N
Sbjct: 1024 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFENHPEIKPKRMKIHVDEN- 1082
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ + FLY+L G S+G+ A M G+P KV+E A AA
Sbjct: 1083 ------ERRVTFLYKLEDGVAEGSFGMHCAAMCGIPNKVIERAEVAA 1123
>gi|444376499|ref|ZP_21175743.1| DNA mismatch repair protein MutS [Enterovibrio sp. AK16]
gi|443679477|gb|ELT86133.1| DNA mismatch repair protein MutS [Enterovibrio sp. AK16]
Length = 846
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 225/876 (25%), Positives = 384/876 (43%), Gaps = 182/876 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+Q+ +K+Q+ + LLF+++G FYEL+ DA+ + LD +T G + G+
Sbjct: 3 QQFLKIKAQHPEELLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
++ + +LV G V EQ+ +K + R++V +VTP T D + + V
Sbjct: 63 SVEGYLARLVQLGESVAICEQIGDPATSKG-----PVERQVVRIVTPGTVSDEALLSERV 117
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
L G +G+A +D + R +++ A+ + A L + P E++Y
Sbjct: 118 DNLIAAIFAHGER-----FGYATLDITSGRFL---LSEPATEEEMQAELQRTRPAELLYP 169
Query: 452 N-------RGLCKEAQK-ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
+CK +++ + +F +A +L D + G+
Sbjct: 170 EDFAFPSLTDMCKGSRRRPIWEFDLETAKQQLNQQFGTRDLV------------GFGVEE 217
Query: 504 SSPWSKALENVMQH--DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQT 561
S A +MQ+ D +AL H+ L+ ++ ++ ++ R L + Q
Sbjct: 218 CSLGLAAAGCLMQYVKDTQRTAL----PHIRALVKEN--KDQSVILDAATRRNLELT-QN 270
Query: 562 L----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L LD T G RLL+ W+ P++D + +N RLD + L K++ + + +A
Sbjct: 271 LSGGLENTVASVLDRTTTPMGSRLLKRWLHQPMRDFKIVNRRLDAITAL-KDTGLYVDLA 329
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
LR + D+E R+ R+ S + + QQ+ SL+ + + + +
Sbjct: 330 NSLRPVGDME----RILGRLAIRSARPRDMARLRGALQQLPEIESLLD--EVQDEAIAPL 383
Query: 672 HKEGHIIPSLSRIFK------PPIF-------------------DGSDGLDKFLTQFEAA 706
+ +P L+ + + PP+ D +DG ++L + EA
Sbjct: 384 KQASAPMPELAELLERAIVEAPPVVIRDGGVIAPGYNAELDEWRDLADGATRYLEELEAR 443
Query: 707 ------IDS---------------------------------------DFPDYQNHDVTD 721
ID+ P+ + H+
Sbjct: 444 ERDRHDIDTLKVGFNQVHGFYIQVSRGQSHLVPPYYVRRQTLKNAERYIIPELKEHEDKV 503
Query: 722 LDAETLSILIE------LF------IEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMH 769
L++++ ++ +E LF +EK + +E A+S +DVL + A A
Sbjct: 504 LNSKSKALALEKKLWEELFDQLLPHLEKLQRAAE---ALSTLDVLANLAERA-------- 552
Query: 770 RPLILPQSKN---PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPR 826
+S N P + + G + I G HP + N L D R
Sbjct: 553 ------ESLNYCRPTLTEQRG---IDIAGGRHPVVEQVMDAPFIANPTSLNPDR-----R 598
Query: 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGES 886
L++TGPNMGGKST +R T L ++A +G +VP E L D IFTR+GA+D + +G S
Sbjct: 599 MLIITGPNMGGKSTYMRQTALITLMAHIGSYVPAESVTLGPVDRIFTRIGASDDLASGRS 658
Query: 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATH 946
TF+VE TETA++L AT++SLV++DE+GRGTST+DG ++A+A L E++ LFATH
Sbjct: 659 TFMVEMTETANILHNATENSLVLMDEIGRGTSTYDGLSLAWASAEWLAEKLKAMTLFATH 718
Query: 947 YHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMA 1006
Y LT+ P + H+ + GD E+ F++ + GA +SYGL VA +A
Sbjct: 719 YFELTELSGQVPGLVNVHL--------DAVEHGD-EIAFMHAVQEGAASKSYGLAVAGLA 769
Query: 1007 GVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSS 1042
GVP+ V++ A ++ S G + EQ + SS
Sbjct: 770 GVPKTVIQRAKTKLRQLEAS-GHEVVTGEQAAPTSS 804
>gi|195162754|ref|XP_002022219.1| GL25757 [Drosophila persimilis]
gi|194104180|gb|EDW26223.1| GL25757 [Drosophila persimilis]
Length = 945
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 182/329 (55%), Gaps = 23/329 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + CID + + V S++ A + +I V Q P
Sbjct: 628 LFEKFSNHYEQWKQ------CIDCVANLDVLGSLAEYARQQMVICVPELVSGVDQ----P 677
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++++ +HP N +PN + LG ++ L LLTGPNMGGKSTL+R L V
Sbjct: 678 FIELQEGYHPCV---NTLTYIPNGLELGTKTEAPLS---LLTGPNMGGKSTLMRELGLLV 731
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 732 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 791
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V L + CR LF+THYH L F + VTL HMAC
Sbjct: 792 LDELGRGTATYDGTAIAASVVNFLA-NLKCRTLFSTHYHNLIDYFHNDQRVTLGHMACMV 850
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N + + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 851 E-NEDTTDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAFELSKKVEAIALQ 909
Query: 1025 KSIGESFKSSEQRSEFSSLHEEWLKTIVN 1053
+ I +S EF LK ++
Sbjct: 910 RKITAKIVASSGEKEFKQQKLHALKDLLQ 938
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 224 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNNLSPGVRQWWVLKSNNFDCVLFFK 283
Query: 293 VGKFYELYELDAEIGHKELDW 313
VGKFYELY DA++G EL +
Sbjct: 284 VGKFYELYHGDADVGVNELGF 304
>gi|238878303|gb|EEQ41941.1| hypothetical protein CAWG_00132 [Candida albicans WO-1]
Length = 1214
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 229/438 (52%), Gaps = 43/438 (9%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
E + +++WL IRDA +R D P YD RTLYIP A K +A +KQYW +KS+ +
Sbjct: 274 EKENEERYQWL--VDIRDAEKRPIDHPDYDPRTLYIPQSAWSKFTAFEKQYWQIKSKMWN 331
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
++FF+ GKFYELYE DA I + + D KI G + GI E + ++ ++ GYK
Sbjct: 332 TVVFFQKGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYK 391
Query: 347 VGRIEQLET----SEQAKARHTNSVISRKLVNVVTPS--TTVDGTIGPDAVHLLAIKEGN 400
V ++EQ E+ + A +I R+L ++T T +D A + L+IKE +
Sbjct: 392 VAKVEQKESMLVKQMRGGATKEEKIIERELKGILTAGTLTNLDMISNDMATYCLSIKEED 451
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
++G+ +G AFVD A + ++DDA C L L+ Q++PKE+I E LC+ A
Sbjct: 452 --KEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQINPKEIICEKGNLCQIAT 509
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSS----SPWSKALENVM 515
K L KF S +T+F D +++LV+ Y++ + S + K L +
Sbjct: 510 KIL-KFCTHSDHQIWNALNPITEFWDYDIALEQLVKAK-YYDAENLDDYSNYPKVLVDFK 567
Query: 516 Q-HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL-------- 562
+ H + F+A GGL+ +L L LD ++ G+I Y + R+ + +DG TL
Sbjct: 568 ENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNSASHMILDGVTLNNLEILNN 627
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMV 609
++ TS GKR L+ W+ HPL V+ IN R D V+YLM + E+ +
Sbjct: 628 TSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYDSVDYLMNDGLELRSI 687
Query: 610 VAQYLRKLPDLERLLGRV 627
+ L +PDLERLL RV
Sbjct: 688 LQDTLANIPDLERLLARV 705
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 171/323 (52%), Gaps = 35/323 (10%)
Query: 725 ETLSI-LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
+TL I + E F + + W +VI I+ ID L +T + +S + P P+ +
Sbjct: 875 DTLKIRMYEKFDKHYNVWMQVIQTIANIDCL----LTLTKASETIGYPSCRPK----LIE 926
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
D G + K L HP + +PND+ LG D P LLTG N GKSTL+R
Sbjct: 927 ADKG--CINFKELRHPCFVSTKEF--IPNDVQLGGDE----PHFGLLTGANAAGKSTLMR 978
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T LA+IL+Q+GC++P E L+ D I TRLGA D I+ G+STF VE +ET +L AT
Sbjct: 979 TTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNAT 1038
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLVILDELGRG S+ DG+AIA +V L + FATHY L F +HP +
Sbjct: 1039 PRSLVILDELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQL 1098
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
M S S N + FLY+L +G P+S+G+ VA M G+P +V+ A AA
Sbjct: 1099 RMGIVVDSGSRN-------ITFLYKLETGTAPKSFGMNVASMCGIPDAIVDNAEIAA--- 1148
Query: 1024 KKSIGESFKSSEQRSEFSSLHEE 1046
K+ EQ S+ L EE
Sbjct: 1149 --------KAYEQTSKLKKLAEE 1163
>gi|68467217|ref|XP_722270.1| hypothetical protein CaO19.12411 [Candida albicans SC5314]
gi|68467446|ref|XP_722156.1| hypothetical protein CaO19.4945 [Candida albicans SC5314]
gi|46444105|gb|EAL03382.1| hypothetical protein CaO19.4945 [Candida albicans SC5314]
gi|46444229|gb|EAL03505.1| hypothetical protein CaO19.12411 [Candida albicans SC5314]
Length = 1214
Score = 219 bits (557), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/438 (34%), Positives = 229/438 (52%), Gaps = 43/438 (9%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
E + +++WL IRDA +R D P YD RTLYIP A K +A +KQYW +KS+ +
Sbjct: 274 EKENEERYQWL--VDIRDAEKRPIDHPDYDPRTLYIPQSAWSKFTAFEKQYWQIKSKMWN 331
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
++FF+ GKFYELYE DA I + + D KI G + GI E + ++ ++ GYK
Sbjct: 332 TVVFFQKGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYK 391
Query: 347 VGRIEQLET----SEQAKARHTNSVISRKLVNVVTPS--TTVDGTIGPDAVHLLAIKEGN 400
V ++EQ E+ + A +I R+L ++T T +D A + L+IKE +
Sbjct: 392 VAKVEQKESMLVKQMRGGATKEEKIIERELKGILTAGTLTNLDMISNDMATYCLSIKEED 451
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
++G+ +G AFVD A + ++DDA C L L+ Q++PKE+I E LC+ A
Sbjct: 452 --KEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQINPKEIICEKGNLCQIAT 509
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSS----SPWSKALENVM 515
K L KF S +T+F D +++LV+ Y++ + S + K L +
Sbjct: 510 KIL-KFCTHSDHQIWNALNPITEFWDYDIALEQLVKAK-YYDAENLDDYSNYPKVLVDFK 567
Query: 516 Q-HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL-------- 562
+ H + F+A GGL+ +L L LD ++ G+I Y + R+ + +DG TL
Sbjct: 568 ENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNSASHMILDGVTLNNLEILNN 627
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMV 609
++ TS GKR L+ W+ HPL V+ IN R D V+YLM + E+ +
Sbjct: 628 TSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYDSVDYLMNDGLELRSI 687
Query: 610 VAQYLRKLPDLERLLGRV 627
+ L +PDLERLL RV
Sbjct: 688 LQDTLANIPDLERLLARV 705
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 169/323 (52%), Gaps = 35/323 (10%)
Query: 725 ETLSI-LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
+TL I + E F + + W +VI I+ ID L + AS + G P + +
Sbjct: 875 DTLKIRMYEKFDKHYNVWMQVIQTIANIDCLLAL-TKASETIG-------YPSCRPKLIE 926
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
D G + K L HP + +PND+ LG D P LLTG N GKSTL+R
Sbjct: 927 ADKG--CINFKELRHPCFVSTKEF--IPNDVQLGGDE----PHFGLLTGANAAGKSTLMR 978
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T LA+IL+Q+GC++P E L+ D I TRLGA D I+ G+STF VE +ET +L AT
Sbjct: 979 TTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNAT 1038
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLVILDELGRG S+ DG+AIA +V L + FATHY L F +HP +
Sbjct: 1039 PRSLVILDELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQL 1098
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
M S S N + FLY+L +G P+S+G+ VA M G+P +V+ A AA
Sbjct: 1099 RMGIVVDSGSRN-------ITFLYKLETGTAPKSFGMNVASMCGIPDAIVDNAEIAA--- 1148
Query: 1024 KKSIGESFKSSEQRSEFSSLHEE 1046
K+ EQ S+ L EE
Sbjct: 1149 --------KAYEQTSKLKKLAEE 1163
>gi|406701259|gb|EKD04409.1| DNA mismatch repair-related protein [Trichosporon asahii var.
asahii CBS 8904]
Length = 1161
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/429 (33%), Positives = 208/429 (48%), Gaps = 48/429 (11%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
FE+L K +D NR P DP YD RT+YIP ++ + ++Q+W +K + D +LFF+
Sbjct: 242 FEFLVDIKDKDGNR--PGDPEYDPRTIYIPKKSWGSFTPFERQFWEIKQNHYDTVLFFQK 299
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELYE DA IGH+E D K+T K + VG+ E + K +A GYKVG++EQ
Sbjct: 300 GKFYELYENDAAIGHQEFDLKLT--DRVKMKMVGVPEQSFEFWAAKFLAAGYKVGKVEQA 357
Query: 354 ETSEQAKARHT-----NSVISRKLVNVVTPSTTVDGT--IGPDAVHLLAIKEGNCGPDNG 406
ET+ + R T ++ R+L V T T VDGT +A H ++IKE + GP N
Sbjct: 358 ETAIGMEMRTTKGGGAKEIVRRELAQVFTNGTIVDGTYLTTDEANHCVSIKESSLGP-NL 416
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
+G +D + + DD C L + Q+ PKE+++ L + LR
Sbjct: 417 PSSFGICVMDASTGSFSLTAFEDDICCTRLETMFRQIRPKELVFAKGNLSVVTMRLLRNI 476
Query: 467 SAGSAALELTPAMAVTDFLDASEV----KKLVQLNGYFNGSSSPWSKALENVMQHDIGFS 522
L P+ F + E + L YF P +A+ + ++ +
Sbjct: 477 --------LPPSTLWQSFKEGKEFLDVDDTIAALKEYFPEGELP--EAITAMTENHLAVE 526
Query: 523 ALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL----------------- 562
A+GGL+ +L L LD D++ + Y RD L +DGQTL
Sbjct: 527 AVGGLLYYLRTLNLDKDLISQKNFSVYDPIRDGKALVLDGQTLGHMEVLMNNEGSEEGTL 586
Query: 563 --YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
L C + GKRL R W+ PL+D IN RLD V+ LM + + + +PDL
Sbjct: 587 LSLLQQCHSPFGKRLFRYWLTAPLRDAAAINARLDAVDDLMHAPSFMSQFKELCKGMPDL 646
Query: 621 ERLLGRVKA 629
ERL+ R+ A
Sbjct: 647 ERLVSRIHA 655
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 163/311 (52%), Gaps = 33/311 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+ F + W +++ I+ +D L S A AS + A P+ + V D
Sbjct: 835 LLSEFDKDRDVWLKMVKVIAELDCLNSLA-RASFNLDA-------PKCRPTFVESDQA-- 884
Query: 790 VLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ + L HP L + + N++ LG + +PRT LLTGPNM GKSTLLR T A
Sbjct: 885 FIDFEDLRHPSMCLKRDF---IANNVQLGGE----VPRTTLLTGPNMAGKSTLLRMTAAA 937
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQ+GC+VP LS D I TR+GA D + STF VE E + +L++A SLV
Sbjct: 938 VIMAQMGCYVPAASARLSPLDKIQTRMGAYDNMFASASTFKVELDECSKILREAGPRSLV 997
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTST+DG AIA AV L FATHY LT +FA HP++ HMA
Sbjct: 998 ILDELGRGTSTYDGMAIAGAVLHHLSTHTLPLGFFATHYGSLTDDFAYHPNIRNMHMAVH 1057
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
+ +VFLY+L G S+G VA +AGVP VV A + G
Sbjct: 1058 VDDTA--------GVVFLYKLIKGHAESSHGTHVAKLAGVPDAVVARADEVS-------G 1102
Query: 1029 ESFKSSEQRSE 1039
E F+ +Q+ E
Sbjct: 1103 EFFEQFQQKLE 1113
>gi|50288573|ref|XP_446716.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526024|emb|CAG59643.1| unnamed protein product [Candida glabrata]
Length = 1216
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 151/451 (33%), Positives = 222/451 (49%), Gaps = 43/451 (9%)
Query: 217 SVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQ 276
+ G KN +++WL RDA +R DDP YD RTLYIP A K + +KQ
Sbjct: 237 ATTGPKNNTFNKQNEERYQWLVDE--RDAQKRPKDDPEYDPRTLYIPSSAWNKFTPFEKQ 294
Query: 277 YWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDA 336
YW +KS+ D ++FFK GKF+ELYE DA + + DWK+ G + GI E +
Sbjct: 295 YWEIKSKMWDCIVFFKKGKFFELYEKDAFLANALFDWKLAGGGRANMQLAGIPEMSFEHW 354
Query: 337 VEKLVARGYKVGRIEQLETSEQAKARH-TNSVISRKLVNVVTPSTTVDG-TIGPD-AVHL 393
+ + GYKV +++Q E+ + R + ++ R+L V+T T VDG I D A +
Sbjct: 355 ASQFIQLGYKVAKVDQRESMLAKEMREGSKGIVKRELQCVLTSGTLVDGDMIHSDLATYC 414
Query: 394 LAIKEGNCG------PDNGSV--VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
LA++E P + + ++G AF+D + V + DD C+ L L+ QV P
Sbjct: 415 LAVREEPSNFYDITQPSSATYTKIFGVAFIDTSTGEVQMTEFLDDEECSRLDTLMSQVRP 474
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
KEVI E LC A K + KF A AL + P DF + + + L YF G+
Sbjct: 475 KEVIIEKHNLCNLANKIV-KFCAAPNALFNYIKPVEEFYDF-EKTHNELLANEEAYF-GT 531
Query: 504 SSPWSKALENVMQHD--IGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCLRMD 558
+ W L+N + +GFSA GGL+ +L L LD+ L +N + ++ + +D
Sbjct: 532 ADGWPSVLKNYYDSNKKVGFSAFGGLLYYLKWLKLDESLISMKNFTEYNFVKSQNTMVLD 591
Query: 559 GQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
G +L ++ +T GKR++R W+ +PL E I R D VE
Sbjct: 592 GISLQNLEIFSNSFDGSDKGTLFKLFNNSITPMGKRMMRKWLMNPLLLKEDIEKRQDSVE 651
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
LM N E+ + LPDLERLL R+ A
Sbjct: 652 LLMNNHELRTKIESVFTGLPDLERLLSRIHA 682
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 150/282 (53%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W + ++ ID L T+ RP+I + +P+ + G + K L HP
Sbjct: 869 WMPTVTCLANIDCLLGLVRTSESLGTPSCRPVICDEV-DPSTKCKKQG-FVDFKSLRHPC 926
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F L +PND+ LG S P LLTG N GKST+LR TC+AVI+AQLGC+V
Sbjct: 927 FNLDSRVNKDFIPNDVTLGNKS----PNIGLLTGANAAGKSTVLRMTCIAVIMAQLGCYV 982
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
P E L+ D I TRLGA D IM G+STF VE +ET +L AT SL++LDELGRG S
Sbjct: 983 PAESASLTPIDRIMTRLGANDNIMQGKSTFFVELSETKRILDLATNRSLLVLDELGRGGS 1042
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG++IA +V + I FATHY L F SHP + M+ + N
Sbjct: 1043 SNDGFSIAESVLHHVATHIQSLGFFATHYGSLGLSFRSHPQIKPMKMSILVDEATRN--- 1099
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY+L G S+G+ VA M G+ + +V+ A AA
Sbjct: 1100 ----VTFLYKLVDGQSEGSFGMHVASMCGIAKSIVDNAQSAA 1137
>gi|125978269|ref|XP_001353167.1| GA20021 [Drosophila pseudoobscura pseudoobscura]
gi|54641920|gb|EAL30669.1| GA20021 [Drosophila pseudoobscura pseudoobscura]
Length = 1189
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 182/329 (55%), Gaps = 23/329 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + CID + + V S++ A + +I V Q P
Sbjct: 872 LFEKFSNHYEQWKQ------CIDCVANLDVLGSLAEYARQQMVICVPELVSGVDQ----P 921
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++++ +HP N +PN + LG ++ L LLTGPNMGGKSTL+R L V
Sbjct: 922 FIELQEGYHPCV---NTLTYIPNGLELGTKTEAPLS---LLTGPNMGGKSTLMRELGLLV 975
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 976 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1035
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + VTL HMAC
Sbjct: 1036 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDYFHNDQRVTLGHMACMV 1094
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N + + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1095 E-NEDTTDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAFELSKKVEAIALQ 1153
Query: 1025 KSIGESFKSSEQRSEFSSLHEEWLKTIVN 1053
+ I +S EF LK ++
Sbjct: 1154 RKITAKIVASSGEKEFKQQKLHALKDLLQ 1182
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 157/548 (28%), Positives = 239/548 (43%), Gaps = 87/548 (15%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 224 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNNLSPGVRQWWVLKSNNFDCVLFFK 283
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY DA++G EL + G+ G E D L+ RGYKV R+EQ
Sbjct: 284 VGKFYELYHGDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILIDRGYKVARVEQ 340
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAIKEGN 400
ET + + K+ + V++R++ + T V G+ IGP+ ++LA+ E
Sbjct: 341 TETPDMVTERCKRIKSTKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLALVEQ- 399
Query: 401 CGPDNGS-VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
D G+ +G F+D + +G DD +C+ L LL P ++ E L
Sbjct: 400 ---DEGTWSRFGICFIDTSIGDFHLGEFEDDKNCSRLLTLLSHHMPVLLLSEKSALSLRT 456
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF-NGSSSPWSKALENVMQHD 518
Q+ +R G +L A +A + KL+ Y NGS W L MQ D
Sbjct: 457 QQVVRTVLGGILREQLPCNGA--HVCNAEKTLKLLAERYYAGNGSEDNWPLVL-RTMQSD 513
Query: 519 -------------IGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY----------- 551
+ ALG + +++ +L+ +LP Y++Y
Sbjct: 514 SDHLGLTPSDNYKLALKALGQCVYFINKCLLEP-----KVLPMARYQMYVPPDQLAEAKP 568
Query: 552 -------RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
R + +D TL LD C T GKR+L W+C P D+E +
Sbjct: 569 AVVSALRRSHMVLDATTLSNLRIIGEEHTLQSTLDHCCTKFGKRMLHHWLCAPSCDIEIL 628
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER------LLGRVKARVQASSCIVLPLIGK 644
R + L++ + + L +PD ER L G + + L +
Sbjct: 629 KERQAAIGELLRLPSELQEMRALLAPMPDFERNLAQIHLFGNKQVKQTGHPDSRAILFEE 688
Query: 645 KVL-KQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQ 702
K+ KQ++ F +++KG A+ L LM ++ P + RI + GS L + L
Sbjct: 689 KIYNKQKLVGFMAVLKGFN-ALTKLPLMFQQCE-TPLIKRITQLTTSGGSFPDLSEELRY 746
Query: 703 FEAAIDSD 710
F A D D
Sbjct: 747 FSTAFDHD 754
>gi|254567730|ref|XP_002490975.1| Protein required for mismatch repair in mitosis and meiosis, forms
a complex with Msh2p to repair bo [Komagataella pastoris
GS115]
gi|238030772|emb|CAY68695.1| Protein required for mismatch repair in mitosis and meiosis, forms
a complex with Msh2p to repair bo [Komagataella pastoris
GS115]
gi|328352492|emb|CCA38891.1| DNA mismatch repair protein mutS [Komagataella pastoris CBS 7435]
Length = 1173
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 214/434 (49%), Gaps = 47/434 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL+ +RDA R DP YD RTL+IP A + +KQYW +KS+ D ++FFK
Sbjct: 232 RYHWLE--DVRDAEGRAQGDPEYDPRTLFIPSSAWSSFTPFEKQYWEIKSKMYDCVVFFK 289
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA+I H E D K+ G R G+ E D + GYKV +++Q
Sbjct: 290 KGKFYELYENDADIAHNEFDLKLAGGGRANMRLAGVPEMSFDYWANAFINAGYKVAKVDQ 349
Query: 353 LETSEQAKARHT-------NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
E+ + R VI R+L V+T T D ++ D A + L++KE + G
Sbjct: 350 KESMLAKEIREKGKTITKEEKVIKRELQCVLTGGTLTDESMLTDEMATYCLSLKEVDNGL 409
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
D + +G FVD A ++ + D C L LL QV PKEV+ + + L
Sbjct: 410 DGRT--FGVCFVDTATGKMRLTEFEDSVECTRLETLLAQVRPKEVLVAKNQISPLTARIL 467
Query: 464 RKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGS-----SSPWSKALENVMQ 516
R F++ S+ + +L P T+FL+ + + YF S S+ +E +
Sbjct: 468 R-FNSPSSCIWNKLKPD---TEFLNHEVTFEELTRGKYFEASDLDDLSNYPPLLVEYHEK 523
Query: 517 HDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYRDC--LRMDGQTL----------- 562
H + FSA G L+ +L L LD+ ++ G+I PY Y+ + MDG TL
Sbjct: 524 HHVAFSAFGALLWYLKSLKLDESIISMGNISPYDPYQHATSMTMDGVTLQNLEIFANTFD 583
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
L+ T GKRL + W+ HPL + I+ RLD VE L+ + E+ +
Sbjct: 584 GSNKGTLFKVLNRATTPFGKRLFKDWVVHPLLLKKSIDERLDSVELLLNDGELKHIFINT 643
Query: 614 LRKLPDLERLLGRV 627
L +LPDLERLL R+
Sbjct: 644 LSRLPDLERLLSRI 657
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 123/294 (41%), Positives = 155/294 (52%), Gaps = 24/294 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S WSE I I ID L S A AS S G+ P + V +D +
Sbjct: 844 FDENYSLWSETIRCIGSIDCLISLA-NASESLGS-------PSCRPEIVDKDEA--FIDF 893
Query: 794 KGLWHP-FALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+ L HP F G G +PND+ LG + LLTG N GKST+LR TC+A I
Sbjct: 894 EELRHPCFIPGGASGSRDFIPNDVKLG----NGFANIALLTGANAAGKSTVLRMTCIATI 949
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+GCFVP L D I TRLGA D IM G+STF VE +ET +LQ AT SL++L
Sbjct: 950 MAQIGCFVPASKATLVPVDKIMTRLGANDNIMQGKSTFYVELSETKRILQNATPRSLLVL 1009
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRG S+ DG+AIA A + I FATHY L F HP V MA
Sbjct: 1010 DELGRGGSSSDGFAIAEACLHHIATHIQSIGFFATHYGTLGASFIGHPQVMPLRMAILVD 1069
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+S+ + FLY+L GA S+G+ VA M G+P+++V+ AA +K
Sbjct: 1070 ESSKT-------ITFLYKLEKGASNGSFGMHVATMCGIPKEIVDNVEIAAKNLK 1116
>gi|403217222|emb|CCK71717.1| hypothetical protein KNAG_0H03020 [Kazachstania naganishii CBS
8797]
Length = 1207
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 160/490 (32%), Positives = 235/490 (47%), Gaps = 62/490 (12%)
Query: 217 SVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQ 276
S G KN ++ + ++ WL K DA R P DP YD RTL IP A K + +KQ
Sbjct: 231 SPPGKKNFNKQNE--ERYHWLVNEK--DAQGRPPSDPEYDPRTLAIPSSAWGKFTPFEKQ 286
Query: 277 YWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDA 336
YW +K Q D ++FFK GKF+ELYE DA + + DWK+ +G + GI E +
Sbjct: 287 YWEIKCQMWDCIVFFKKGKFFELYEKDALLANSLFDWKLAGNGRANMQLAGIPEMSFEYW 346
Query: 337 VEKLVARGYKVGRIEQLETSEQAKARH-TNSVISRKLVNVVTPSTTVDG-TIGPD-AVHL 393
+ + GYKV +++Q E+ + R ++ R+L V+T T DG I D A +
Sbjct: 347 ASQFIQLGYKVAKVDQKESMLAKEMREGAKGIVKRELECVLTAGTLTDGDMIHTDLATYC 406
Query: 394 LAIKE--GNCGPDNGSVV------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
LAIKE GN S + +G AF+D A + DD+ C L ++ QV P
Sbjct: 407 LAIKEESGNYYKAEMSNIPTSDRLFGIAFIDTATGEAKIIEFRDDSECTKLDTIMSQVKP 466
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
EVI E L A K + KF++ S AL + P F E KL + + + S
Sbjct: 467 TEVIIEKGNLSNLANKIV-KFNSASNALFNTIKPESEFYSFDKTYE--KLTENDAEYFAS 523
Query: 504 SSPWSKALENVMQH--DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMD 558
W L++ + IGFSA GGL+ +L L LD +++ G+I Y V + + L +D
Sbjct: 524 EEQWPPVLQSYYKEGKKIGFSAFGGLVYYLKWLKLDRNLVSMGNIEEYNVVKSQNSLVLD 583
Query: 559 GQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
G TL ++ +T GKR+++ W+ HPL I RLD VE
Sbjct: 584 GITLQNLEIFSNTFDGSDKGTLFKLFNNSITPMGKRMMKKWLMHPLLHKTDIEKRLDSVE 643
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLV 658
L+ + E+ ++ L KLPD+ER+L RV SC + +VK F ++
Sbjct: 644 LLLSDGELRQILEDALAKLPDVERMLSRV------HSCSI-----------KVKDFERVI 686
Query: 659 KGLRIAMDLL 668
+G + LL
Sbjct: 687 QGFESIVGLL 696
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 160/290 (55%), Gaps = 15/290 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W +H I+ ID + + A T+ RP + + + NG LK K L H
Sbjct: 859 TSWMPTVHLIANIDCIVALARTSETLGFPSCRPTFVDEHDPVTGNKKNG--FLKFKSLRH 916
Query: 799 P-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
P F LG +PNDI LG+D +P+ LLTG N GKST+LR TC+AVI+AQ+GC
Sbjct: 917 PCFNLGSAIIKDFIPNDIELGDD----VPQVGLLTGANAAGKSTILRITCIAVIMAQMGC 972
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
FVPCE VLS D I TRLGA D IM G+STF VE ET +L T SL+++DELGRG
Sbjct: 973 FVPCESAVLSPVDRIMTRLGANDNIMQGKSTFFVELAETKKILDMGTNRSLLVVDELGRG 1032
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA +V + + FATHY L F HP + M
Sbjct: 1033 GSSGDGFAIAESVLHHVATHMQSLGFFATHYGTLGSHFKGHPQIRPMRMRILV------- 1085
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+G +++ FLY+L GA S+G+ VA M +P+ ++E A A M+++
Sbjct: 1086 DEGTRKVTFLYKLEDGASEGSFGMHVAAMCDIPRSIIETADKVAEKMEQT 1135
>gi|328863363|gb|EGG12463.1| hypothetical protein MELLADRAFT_46541 [Melampsora larici-populina
98AG31]
Length = 915
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 172/287 (59%), Gaps = 27/287 (9%)
Query: 733 LFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMH-RPLIL--PQSKNPAVRQDNGGP 789
LF + W + ++ ID L S A ASM+ G RP IL PQ++
Sbjct: 569 LFDQSYPDWLLTVKTVAEIDCLISLA-QASMAIGEPSCRPEILDLPQAE----------- 616
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
L + L HP A+G + + ND+++G D+C R +LLTGPNM GKSTLLR TC+AV
Sbjct: 617 -LGFESLRHPCAVGRDESDFIANDVIVG--GDEC--RMILLTGPNMAGKSTLLRMTCVAV 671
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQLGC+VP +S D I TR+GA+D I STF VE + +L +AT SL+I
Sbjct: 672 IMAQLGCYVPATSARISPVDRICTRMGASDHIFAHASTFKVEMDDAKKILSEATPKSLMI 731
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTSTFDG+AIA+AV +L +C FATHY L ++FA HP++ ++M
Sbjct: 732 LDELGRGTSTFDGHAIAFAVLHRLATHCSCLGFFATHYSALNEDFAHHPNIASKYMLTKV 791
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ +E++FLY+LT+G P+SYG VA M G+P ++V+ A
Sbjct: 792 DEET-------REVLFLYKLTNGVSPKSYGPHVAKMGGIPDEIVKRA 831
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 218/431 (50%), Gaps = 60/431 (13%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGIS 329
M+ + Q+W +K ++ D +LFF+ GKF ELYE DA IGH+E D KIT K VG+
Sbjct: 1 MTPFETQFWEIKQRHFDTVLFFQKGKFSELYEGDAMIGHREFDLKITKR--VKMSMVGVP 58
Query: 330 ESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-------------------VISR 370
E+ +D + K +A+GYKV +++Q ET+ A+ R+ S ++ R
Sbjct: 59 ETSVDFWIAKFLAKGYKVCKVDQCETALGAEMRNKGSLPSSKSAKSQPKPKPGAKEIVRR 118
Query: 371 KLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN 428
+L +VVT T VDG I D A L+AIKE G ++G ++G +D + + +
Sbjct: 119 ELRSVVTSGTIVDGNILTDDAATCLMAIKE-TIG-ESGLPIFGVVILDASTAEFNLSYFD 176
Query: 429 DDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488
D A+ L ++ + PKE+++E GL + L+ ++ + + +FL
Sbjct: 177 DSANRTHLETIMSRFRPKEIVHEKSGLTTSTIRVLKNIASSDCTWTI---LKSNEFLQID 233
Query: 489 E-VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDIL 546
E ++KL +L G N P +A+ ALGGL+ +L +L LD ++L ++
Sbjct: 234 ECMEKLSELFGEVN---KPIPEAISAFHSKPETMMALGGLLWYLGQLNLDKELLSCDNVK 290
Query: 547 PYKVYR--DCLRMDGQTL------------------YLDSCVTSSGKRLLRSWICHPLKD 586
V+R + +++DG+T+ L+ C+T GKRL R W+C PL+
Sbjct: 291 VLDVFRPTETMQLDGKTISDLELLQGDLGEDSRLLKLLNRCITPFGKRLFRHWLCSPLQS 350
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKV 646
I RLD V YL+++ + V L LPDLERL+ +R+ A SC V + KV
Sbjct: 351 ASAIEMRLDSVTYLIEHPDFVDQFGT-LTGLPDLERLI----SRIHAGSCTVKNFL--KV 403
Query: 647 LKQQVKVFGSL 657
LK K+ +L
Sbjct: 404 LKSFSKIQTTL 414
>gi|241950279|ref|XP_002417862.1| mismatch DNA repair protein, mutS homologue, putative [Candida
dubliniensis CD36]
gi|223641200|emb|CAX45579.1| mismatch DNA repair protein, mutS homologue, putative [Candida
dubliniensis CD36]
Length = 1222
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 151/437 (34%), Positives = 228/437 (52%), Gaps = 41/437 (9%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
E + +++WL IRDA +R D P YD RTLYIP A K +A +KQYW +KS+ +
Sbjct: 282 EKENEERYQWL--VDIRDAEKRPADHPDYDPRTLYIPQSAWSKFTAFEKQYWQIKSKMWN 339
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
++FF+ GKFYELYE DA I + + D KI G + GI E + ++ ++ GYK
Sbjct: 340 TVVFFQKGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYK 399
Query: 347 VGRIEQLET----SEQAKARHTNSVISRKLVNVVTPS--TTVDGTIGPDAVHLLAIKEGN 400
V ++EQ E+ + A +I R+L ++T T +D A + L+IKE
Sbjct: 400 VAKVEQKESMLVKQMRGGATKEEKIIERELKGILTGGTLTNLDMISNDMATYCLSIKEEE 459
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
++G+ +G AFVD A + ++DDA C L L+ Q++PKE+I E R LC+ A
Sbjct: 460 --KEDGTKTFGVAFVDTATSELNFIELDDDAECTKLDTLITQINPKEIICEKRNLCQIAT 517
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSSSPWSKALENVM---- 515
K L KF A S +T+F D +++LV+ Y + +SK + ++
Sbjct: 518 KIL-KFCAHSDHQIWNALNPITEFWDYDIALEQLVKAKYYDAENLDDYSKYPKVLVDFKD 576
Query: 516 QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC---LRMDGQTL--------- 562
H + F+A GGL+ +L L LD ++ G+I Y + R+ + +DG TL
Sbjct: 577 NHQVTFNAFGGLLYYLKLLKLDTSIMSLGNIHEYHISRNSASHMILDGITLNNLEILNNT 636
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVV 610
++ TS GKR L+ W+ HPL V+ IN R D V+YLM + E+ ++
Sbjct: 637 SDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYDAVDYLMNDGLELRSIL 696
Query: 611 AQYLRKLPDLERLLGRV 627
L +PDLERLL RV
Sbjct: 697 QDTLANIPDLERLLARV 713
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 180/343 (52%), Gaps = 31/343 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F + + W +VI I+ ID L + AS + G P + + D G
Sbjct: 889 MYEKFDKHYNVWMQVIQTIANIDCLLAL-TKASETIG-------YPSCRPKLIEADKG-- 938
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ K L HP + +PND+ LG D P LLTG N GKSTL+R T LA+
Sbjct: 939 CIDFKELRHPCFVSTKEF--IPNDVQLGGDQ----PHFGLLTGANAAGKSTLMRTTALAI 992
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
IL+Q+GC++P E L+ D I TRLGA D I+ G+STF VE +ET +L AT SLVI
Sbjct: 993 ILSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTFFVELSETKKILSNATPRSLVI 1052
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRG S+ DG+AIA +V L + FATHY L F +HP + Q M
Sbjct: 1053 LDELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATHYGTLGLSFKTHPQIKQQRMGIIV 1112
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
++S N + FLY+L +G P+S+G+ VA M G+P ++V+ A AA A +++
Sbjct: 1113 DNDSRN-------ITFLYKLETGTAPKSFGMNVASMCGIPDEIVDNAEIAAKAYEQTSKL 1165
Query: 1030 SFKSSEQRSEFSSLHEE----WLKTIVNVSRVDCNSDDDDAYD 1068
+ E + + SL + WL T R+D S D YD
Sbjct: 1166 KKMAEESKGDDISLGLQSDFVWLAT----GRIDDLSKDILKYD 1204
>gi|401882497|gb|EJT46755.1| DNA mismatch repair-related protein [Trichosporon asahii var.
asahii CBS 2479]
Length = 1161
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 206/429 (48%), Gaps = 48/429 (11%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
FE+L I+D RP DP YD RT+YIP ++ + ++Q+W +K + D +LFF+
Sbjct: 242 FEFL--VDIKDKEGNRPGDPEYDPRTIYIPKKSWGSFTPFERQFWEIKQNHYDTVLFFQK 299
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELYE DA IGH+E D K+T K + VG+ E + K +A GYKVG++EQ
Sbjct: 300 GKFYELYENDAAIGHQEFDLKLT--DRVKMKMVGVPEQSFEFWAAKFLAAGYKVGKVEQA 357
Query: 354 ETSEQAKARHT-----NSVISRKLVNVVTPSTTVDGT--IGPDAVHLLAIKEGNCGPDNG 406
ET+ + R T ++ R+L V T T VDGT +A H ++IKE + GP N
Sbjct: 358 ETAIGMEMRTTKGGGAKEIVRRELAQVFTNGTIVDGTYLTTDEANHCVSIKESSLGP-NL 416
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
+G +D + + DD C L + Q+ PKE+++ L + LR
Sbjct: 417 PSSFGICVMDASTGSFSLTAFEDDICCTRLETMFRQIRPKELVFAKGNLSVVTMRLLRNI 476
Query: 467 SAGSAALELTPAMAVTDFLDASEV----KKLVQLNGYFNGSSSPWSKALENVMQHDIGFS 522
L P+ F + E + L YF P A+ + ++ +
Sbjct: 477 --------LPPSTLWQSFKEGKEFLDVDDTIAALKEYFPEGELP--AAITAMTENHLAVE 526
Query: 523 ALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL----------------- 562
A+GGL+ +L L LD D++ + Y RD L +DGQTL
Sbjct: 527 AVGGLLYYLRTLNLDKDLISQKNFSVYDPIRDGKALVLDGQTLGHMEVLMNNEGSEEGTL 586
Query: 563 --YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
L C + GKRL R W+ PL+D IN RLD V+ LM + + + +PDL
Sbjct: 587 LSLLQQCHSPFGKRLFRYWLTAPLRDAAAINARLDAVDDLMHAPSFMSQFKELCKGMPDL 646
Query: 621 ERLLGRVKA 629
ERL+ R+ A
Sbjct: 647 ERLVSRIHA 655
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 163/311 (52%), Gaps = 33/311 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+ F + W +++ I+ +D L S A AS + A P+ + V D
Sbjct: 835 LLSEFDKDRDVWLKMVKVIAELDCLNSLA-RASFNLDA-------PKCRPTFVESDQA-- 884
Query: 790 VLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ + L HP L + + N++ LG + +PRT LLTGPNM GKSTLLR T A
Sbjct: 885 FIDFEDLRHPSMCLKRDF---IANNVQLGGE----VPRTTLLTGPNMAGKSTLLRMTAAA 937
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQ+GC+VP LS D I TR+GA D + STF VE E + +L++A SLV
Sbjct: 938 VIMAQMGCYVPAASARLSPLDKIQTRMGAYDNMFASASTFKVELDECSKILREAGPRSLV 997
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTST+DG AIA AV L FATHY LT +FA HP++ HMA
Sbjct: 998 ILDELGRGTSTYDGMAIAGAVLHHLSTHTLPLGFFATHYGSLTDDFAYHPNIRNMHMAVH 1057
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
+ +VFLY+L G S+G VA +AGVP VV A + G
Sbjct: 1058 VDDTA--------GVVFLYKLIKGHAESSHGTHVAKLAGVPDAVVARADEVS-------G 1102
Query: 1029 ESFKSSEQRSE 1039
E F+ +Q+ E
Sbjct: 1103 EFFEQFQQKLE 1113
>gi|391335569|ref|XP_003742162.1| PREDICTED: DNA mismatch repair protein Msh6-like [Metaseiulus
occidentalis]
Length = 1146
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 175/287 (60%), Gaps = 24/287 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-G 788
+ F EK W +VI +S +D L S A+ + + G++ RP I +S+ +R NG
Sbjct: 855 IFHAFDEKRPLWKKVIECLSNLDCLMSLALYGNNAGGSVCRPKINHESQKAIIRIVNGCH 914
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGE-DSDDCLPRTL-LLTGPNMGGKSTLLRATC 846
P L K LGE+ + ND LG + C ++ LLTGPNMGGKSTL+R
Sbjct: 915 PCLLKK-------LGEDK--LIANDFTLGTVEEGRCDGSSVALLTGPNMGGKSTLMRQVG 965
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L V++AQLG +VP E SL D IFTRLGA+D I GESTFLVE ET++V + AT+ S
Sbjct: 966 LLVVMAQLGAWVPAEEMEFSLVDRIFTRLGASDHITLGESTFLVEMLETSAVFKHATKHS 1025
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
LV+LDELGRGTST DG ++AYAV +L + N R LF+THYH L K+ V L HMA
Sbjct: 1026 LVLLDELGRGTSTNDGASLAYAVLAEL-SKSNRRTLFSTHYHDLAKDIQG---VYLGHMA 1081
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
C ++ D+++VFLY+ G C +S+G VA +AG+PQ++V
Sbjct: 1082 CVVEN--------DEDVVFLYKFVPGNCEKSFGFNVARLAGLPQRIV 1120
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 200/450 (44%), Gaps = 78/450 (17%)
Query: 235 EWLDPS-----KIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
EWL S + +D + ++ D YD TL++P ++ +Q+W +KS++ D +L
Sbjct: 223 EWLHLSYEFLKEPKDLSGKKIGDADYDPSTLHVPNSFKNSLTPGVRQWWELKSRHFDTVL 282
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
FFKVGKFYELY +DA IG + L G G E + +E L+ +GYK R
Sbjct: 283 FFKVGKFYELYHMDAVIGVENLGLTYM---KGDWAHSGFPEVALQRNMEALIQKGYKCAR 339
Query: 350 IEQLETSEQAKARHTNS--------VISRKLVNVVTPSTTVDGTIG-PDAVHLLAI--KE 398
+EQ ET + R S V+ R++ NV + + G P + + LA+ KE
Sbjct: 340 VEQTETPSMMEQRCKTSGKSSKFDKVVRREICNVSSKGLQLCGADAVPGSSYCLALFSKE 399
Query: 399 GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+G VD R +G DD ++L L+ + +P E I E R + +
Sbjct: 400 RR---------FGVCLVDSTVGRFHIGEFEDDHQLSSLRTLISRFAPVEAILE-RSISAD 449
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQH- 517
++ + A + A FL A + L++ YF G+ P +AL+ ++
Sbjct: 450 VKRIVEAIGA------IIDQPAKNKFLSAEKALTLIREGDYFKGNEYP--QALKGLIAEN 501
Query: 518 -----------DIGFSALGGLISHLSR-LMLDDVLR--------------NGDILPYKVY 551
++ +AL ++ L L+L+DVL GD LP +
Sbjct: 502 DPLMSTPRAGCELAVAALASIVGRLQEALILEDVLTMVEFETIEFKFEGGKGDYLPKIMI 561
Query: 552 RDCLRMDGQTLYLDS--------------CVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
D + + ++ +S C T+ G R L+ W+ P E I +R D V
Sbjct: 562 MDSVALTNLEIFENSVGTSEGSLISTINFCSTAFGLRHLKKWLLGPSCVSEEIESRWDAV 621
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
LM+N ++ + + L+KLPD++++L R+
Sbjct: 622 GELMENFSLLKTLQERLKKLPDMDKMLARI 651
>gi|367008344|ref|XP_003678672.1| hypothetical protein TDEL_0A01290 [Torulaspora delbrueckii]
gi|359746329|emb|CCE89461.1| hypothetical protein TDEL_0A01290 [Torulaspora delbrueckii]
Length = 1225
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 161/501 (32%), Positives = 237/501 (47%), Gaps = 64/501 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL RDA+ R DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 261 RYHWLVDE--RDASGRPITDPQYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 318
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA +G+ D KI G + GI E D + + RGYKV +++Q
Sbjct: 319 KGKFFELYEKDAMLGNHLFDLKIAGGGRANMQLAGIPEMSFDYWASQFIQRGYKVAKVDQ 378
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKE--GN---CGPD 404
E+ + R + ++ R+L V+T T +G + A + LA++E GN D
Sbjct: 379 RESMLAKEMREGSKGIVKRELQYVLTSGTLTEGNMLQSDLATYCLAVREESGNFYDLEND 438
Query: 405 NGSV------VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
N S ++G AF+D A + + DD C L ++ QV+PKEVI E L
Sbjct: 439 NQSPGVAPKRLFGVAFIDTATGELNLVEFEDDDECTKLDTIMSQVNPKEVIMEKDNLSSL 498
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQH- 517
A K + KF+A A+ T+F + K + + YF S W L+ +
Sbjct: 499 AHKII-KFNAAPQAI-YNYIKPDTEFYGYDKTSKELDDSKYFPDKSQ-WPAILKQYYEQG 555
Query: 518 -DIGFSALGGLISHLSRLMLDDVLRN-GDILPYK--VYRDCLRMDGQTL----------- 562
IGFSA GGL+ +L L LD+ L + G++ Y +++ L MDG TL
Sbjct: 556 KKIGFSAFGGLLYYLQWLKLDESLISMGNVKEYNPTQFQNSLVMDGVTLQNLEIFTNSFD 615
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ ++ GKR+++ W+ HPL + IN RLD VE LM + + ++
Sbjct: 616 GTDKGTLFKLFNKAISPMGKRMMKKWLMHPLLKQKDINKRLDTVESLMSDGNLRDLLEST 675
Query: 614 LRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
+LPDLER L RV + +VK F ++G +DLL M
Sbjct: 676 FAQLPDLERTLSRVHSG-----------------NLKVKEFDKTIQGFEAVVDLLQKMSS 718
Query: 674 ---EGHIIPSLSRIFKPPIFD 691
EG + +S I K D
Sbjct: 719 HSLEGSLSDYVSSIPKSLFVD 739
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 165/291 (56%), Gaps = 15/291 (5%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
+ W + AI+ ID L + T+ S RP ++ + + + NG LK K L
Sbjct: 875 GTSWMPTVQAIASIDCLLALVRTSESLSFPYCRPTLVDELDHETGAKLNG--FLKFKSLR 932
Query: 798 HP-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
HP F LG +PND+ LG+D C P+ LLTG N GKST+LR TC+AVI+AQ+G
Sbjct: 933 HPCFNLGTTTSKDFIPNDVELGKD---C-PQLGLLTGANAAGKSTVLRMTCVAVIMAQMG 988
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
C+VPCE +L+ D I TRLGA+D IM G+STF VE +ET +L AT SL++LDELGR
Sbjct: 989 CYVPCESAILTPMDRIMTRLGASDNIMQGKSTFFVELSETKKILDLATNRSLLVLDELGR 1048
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
G S+ DG+AIA V + I FATHY L + F HP V M+ +
Sbjct: 1049 GGSSSDGFAIAEGVLHHVATHIQSLGFFATHYASLGQSFKGHPQVRPLKMSIMVDEKT-- 1106
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ + FLY+L G S+G+ VA M G+ +++V+ A AA +M+ +
Sbjct: 1107 -----RTVAFLYKLVDGQSEGSFGMHVASMCGIAEEIVDNAQVAAASMEHT 1152
>gi|339248295|ref|XP_003375781.1| DNA mismatch repair protein Msh6 [Trichinella spiralis]
gi|316970814|gb|EFV54686.1| DNA mismatch repair protein Msh6 [Trichinella spiralis]
Length = 884
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 187/344 (54%), Gaps = 25/344 (7%)
Query: 689 IFDGSDGLDKFLTQFEAAID-SDFPDYQNHDVTDL---------DAET-----LSILIEL 733
I LD +L + ++ S F Y ++ DL D E + L
Sbjct: 524 IVHAEKQLDNYLKTIQKRLNCSGFKRYTTKELDDLVKLLAASEADREVALKDIMRRLFAN 583
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E+ +W + I+ +DVL +FA A + R + P+ + +G L++
Sbjct: 584 FCERKVKWYAAVENIATLDVLLAFAQYAKCCT----REVCCPK----FIDAIDGKTFLRL 635
Query: 794 KGLWHPFALG-ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
HP + G + ND+L+G D + LLLTG NMGGKSTL+R ++LA
Sbjct: 636 DESVHPCCGKIKTQGDYIANDVLIGSSESD-TGQVLLLTGANMGGKSTLMRQVGTLIVLA 694
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+G +VP LS D IFTR+GA D ++TG+ST VE ET+++L+ AT S VI+DE
Sbjct: 695 QIGSYVPARNFTLSPVDCIFTRIGARDSLITGQSTLFVELRETSAILKHATIHSFVIIDE 754
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTST+DG AIA+A + + I CR +F+THYH L A++P + L HMAC ++
Sbjct: 755 LGRGTSTWDGTAIAHATLQYITNHIGCRTIFSTHYHSLMDSLAANPRIRLGHMACMVENE 814
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
SE ++ +VFLY+L GACP+SYG A +AG+ V++ A
Sbjct: 815 SEGADPTEENVVFLYKLAPGACPKSYGFNAAKLAGIHVDVIKKA 858
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 163/403 (40%), Gaps = 104/403 (25%)
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
F VGKFYELY +DA +G K L+ C G E D ++L+ G+KV R+
Sbjct: 43 FPVGKFYELYHMDAVVGVKNLNLSFMKGDYAHC---GFPEVSFDRFSDQLIEHGFKVARV 99
Query: 351 EQLETSEQAKAR-------HTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGP 403
EQ ET E + R VI R++ ++T T
Sbjct: 100 EQTETPEMLQKRAHQELLPSKEKVIRREICRIITRGTKT--------------------- 138
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ F++ V + DD + L +L P ++++ RG +
Sbjct: 139 --------YNFLETEDDNVQISQFEDDCDYSQLRTVLASYPPVQILFP-RGQLSPQMLNM 189
Query: 464 RKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF---NGSSSPWSKALENVM---- 515
K++ + E L P + +F A++ + + L+ YF + + W +AL +
Sbjct: 190 FKYNLNNVDKEALIPKV---EFWTAADTLRNLALDCYFGVDDRGNVDWPEALATCIDQQD 246
Query: 516 --------QHDIGFSALGGLISHLSRLMLDD----------------------------- 538
Q+ +G S+ G ++ +L ++D
Sbjct: 247 LFQQTPKPQYALGISSFGAIVWYLKECLIDHDILRLKNFELYSPPATVEFGKLSSCHQPL 306
Query: 539 ----------VLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKD 586
LRN DI+ ++ + T+Y ++ C T+ GKRLL W+C+PL D
Sbjct: 307 KNRYMVLNDITLRNLDIVNFERKKS----TKVTVYDEINLCKTAMGKRLLHFWLCNPLCD 362
Query: 587 VEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
++ I R V L++ +E+ + + LR++PDLERLL ++ +
Sbjct: 363 LQEIEQRQVAVRNLIEQTELFESLIKQLREIPDLERLLQKMSS 405
>gi|34481396|emb|CAC79990.1| sperm protein [Homo sapiens]
Length = 328
Score = 216 bits (551), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 172/297 (57%), Gaps = 16/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL-PQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP+IL P+ +P LK
Sbjct: 8 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTHP---------FLK 58
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+KG HP G +PNDIL+G E+ ++ LL G +R L
Sbjct: 59 LKGSPHPCITKTFFGDDFIPNDILIGCEEEEQENGKAIVCLLLDQIWGASLRXMRQAGLL 118
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV
Sbjct: 119 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLV 178
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH +++ S L HMAC
Sbjct: 179 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHYISRRLFSKCCCGLGHMACM 238
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 239 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 293
>gi|440795533|gb|ELR16653.1| MutS domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 1266
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 148/244 (60%), Gaps = 10/244 (4%)
Query: 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
A L+ + F + + WS + ++ +D L S A T++ M RP +
Sbjct: 933 AGVLTQYLATFGQHFAVWSAAVTCVAELDCLLSLAKTSAFGGDPMCRPTFVVDVP----- 987
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
+ PVL+++ L HP +PNDI +G + LLTGPNMGGKSTLLR
Sbjct: 988 -EGTTPVLEVEELRHPCITPRVADTFIPNDIRIGGPHAPVV----LLTGPNMGGKSTLLR 1042
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
C++VI+AQ+GC+VP +C L+ D IFTR+GA D IM G+STF+VE ETA++L+ AT
Sbjct: 1043 QACISVIMAQMGCYVPASICRLTPVDRIFTRIGANDNIMAGQSTFMVELQETANILKNAT 1102
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLVI+DELGRGTSTFDGY IAY V L R+ CR LF+THYH LTKEF + + L
Sbjct: 1103 AHSLVIMDELGRGTSTFDGYGIAYGVLDDLSRRLKCRSLFSTHYHLLTKEFEGNREIALF 1162
Query: 964 HMAC 967
HM C
Sbjct: 1163 HMGC 1166
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 209/450 (46%), Gaps = 80/450 (17%)
Query: 244 DANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELD 303
DA RR P YD TL+IP +++ +Q+QYW +KS+ D L+FF+VGKF+ELY D
Sbjct: 324 DAERRPRTHPNYDPSTLFIPKSEFARLTPAQQQYWLIKSKNWDSLVFFRVGKFFELYNKD 383
Query: 304 AEIGHKELDWKITLS---GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAK 360
A++G+K D K+ + G RQ G+ + + KLVA G+KV +++ ETS AK
Sbjct: 384 ADLGNKLFDLKLVIKPTRGGSNMRQCGVPVPNLQIWLAKLVALGHKVVIVDETETSVGAK 443
Query: 361 ARH---------------TNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
R T+ ++ R++ V+T T VD + D A ++L+IKE + P
Sbjct: 444 VRQRQGDGNWKKAVAKSRTDGLVDRQVKQVLTAGTIVDEGLMNDHRANYILSIKE-DIIP 502
Query: 404 DNGS----VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
D S V YG FVDC +G DD+ L LL++V P E++YE K
Sbjct: 503 DPESRTEEVTYGICFVDCTTSEFNLGQFVDDSERNQLETLLLRVKPSEILYE-----KTL 557
Query: 460 QKALRKFSAGSAALELTPAMAVTD-FLDASEVKKLVQLNGYFNGSS-----------SPW 507
Q R + P M+ + FL A + VQ + F G + S W
Sbjct: 558 QLIKRSV--------VCPLMSAREPFLGADATVEYVQQHNVFVGQNDADEHPAADDLSAW 609
Query: 508 SKALENVMQHDIGFSALGGLIS----HLSRLMLDDVLRNGDILPYKVYR----DCLRMDG 559
L + H+ G S +S + L LD + Y D L +DG
Sbjct: 610 PPVL--LEHHEAGASLALSALSGLLVYFHELKLDHLALARKFNHYTPAGSNELDHLVLDG 667
Query: 560 QTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+TL +D CVT GKRL + WI PL+ VE I +RL+ VE
Sbjct: 668 KTLTNLEIFENNFDKGVAGTLLNVMDHCVTPFGKRLFKRWIAKPLRRVEDIEDRLNAVED 727
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
L + E+ + + L+ LPDLER + R+ A
Sbjct: 728 LNERPELRDALWEQLKSLPDLERAISRIHA 757
>gi|111226571|ref|XP_001134558.1| hypothetical protein DDB_G0281683 [Dictyostelium discoideum AX4]
gi|121962480|sp|Q1ZXH0.1|MSH3_DICDI RecName: Full=DNA mismatch repair protein Msh3; AltName: Full=MutS
protein homolog 3
gi|90970653|gb|EAS66875.1| hypothetical protein DDB_G0281683 [Dictyostelium discoideum AX4]
Length = 1428
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 191/336 (56%), Gaps = 31/336 (9%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S +S ++ IS +D L S A +S+ RP + + K+ ++ +NG H
Sbjct: 1098 SLFSNFVNKISNLDCLFSLAKVSSLE--GYIRPQFVKEKKDGGIQIENG---------RH 1146
Query: 799 PFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
P L + G VPN I L E + C +++++TGPNMGGKS+LLR T L VI+AQ+G
Sbjct: 1147 PVVEAILSGSDGSYVPNTIELRESA--C--KSMIITGPNMGGKSSLLRQTALIVIMAQVG 1202
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
CFVP C LS+ D I+TR+GA D I TG+STF +E ET+ +L+ +TQ++LVILDELGR
Sbjct: 1203 CFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEETSDILKNSTQNTLVILDELGR 1262
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMACAFKSNSE 974
GTST DG AIAY+ + +VE + C LF THY L + +P V HM + +
Sbjct: 1263 GTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLELQYPTQVGNFHMGYLEEKQDQ 1322
Query: 975 NYSKG-DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
K +++FLY+L GA SYGL +A +AG+P +V+ A + MK+SI
Sbjct: 1323 QLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVIADALKKSNEMKESITRRANL 1382
Query: 1034 SEQR------SEFSSLHEEWLKTIVNVSRVDCNSDD 1063
S+ + +E S+ + W N +R NS+D
Sbjct: 1383 SDGKDQQQIENEIKSIIKNW-----NSNRTTLNSND 1413
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-----KNSEVVMVVAQYLRKLP 618
++ T SG R+ +WIC PL +E I R D VE L+ + +V +++ + +P
Sbjct: 814 MNRTSTFSGSRMFINWICKPLNQLELIKERQDAVEELVNGIKTNSPPIVSIISLFKSHIP 873
Query: 619 DLERLLGRVKARVQAS 634
DL+R L R+ +VQ +
Sbjct: 874 DLQRNLSRIYYKVQCT 889
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELD-WKITLSGVGKCRQVGISESG 332
++QY +K + D +L + G Y+ + DAE+ +K L+ + C I
Sbjct: 457 EQQYIAIKKENPDTVLMVECGYKYKFFGEDAEVANKVLNIYSYVAKNFLNC---SIPTQR 513
Query: 333 IDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTI----- 386
+ + +LV GYKVG +EQ ET+ +A + + RKL V T ST +D I
Sbjct: 514 LFFHLRRLVMAGYKVGIVEQTETAALKAISSSKSQPFERKLTRVYTSSTFIDDDIDDQLT 573
Query: 387 GPDAVHLLAIKEGNCGPDNGSVV---------------------YGFAFVDCAALRVWVG 425
L++ E N V+ F V +
Sbjct: 574 SSSPQFLVSFYESTPKNKNDDVIKKQRDNEEEGIDSSNESSTSTISFVAVSVKTGEIIYD 633
Query: 426 TINDDASCAALGALLMQVSPKEVI 449
T D+ + L +L + P E++
Sbjct: 634 TFKDNVMRSQLETILTHIKPSEIL 657
>gi|429328637|gb|AFZ80397.1| DNA mismatch repair protein, putative [Babesia equi]
Length = 1173
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 171/291 (58%), Gaps = 23/291 (7%)
Query: 737 KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
K+ ++ +++ S D L S A A S M RP++ P+S L IKG
Sbjct: 875 KSFKFCKLVLVASQFDCLSSLATVAKNSPVPMCRPVVHPKS---------TSTFLDIKGC 925
Query: 797 WHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
+P N L VPNDI + + +++TGPNMGGKSTLLR LAVI+AQ+G
Sbjct: 926 TYPL-FQVNPHLFVPNDISMVDSKG-----IIVITGPNMGGKSTLLRQVALAVIMAQIGS 979
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+V C ++ D IFTRLGA+D +M G+STFLVE + +++L KAT++SL ++DELGRG
Sbjct: 980 YVTATSCEFTVVDCIFTRLGASDNLMQGKSTFLVELQDISALLSKATKNSLALVDELGRG 1039
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
TSTFDG AIA A ++ E INCR +F TH+ + K +V + HMA S+N
Sbjct: 1040 TSTFDGTAIAVASLEKISE-INCRCIFTTHFQDVCKAAKEMYNVVMYHMAAKIDEESQN- 1097
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ FLY+L G CPES GL VA +AG+P+ V++ A A+L K++
Sbjct: 1098 ------VEFLYKLIEGICPESQGLHVAKLAGIPKNVIDIARTASLNFYKTM 1142
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 154/648 (23%), Positives = 268/648 (41%), Gaps = 107/648 (16%)
Query: 33 NFTTKQRNPVGDSSGQPTVSATEDSSLEIRGTDTPPEKVPRQI------LPSGFKANEGT 86
N K+ + ++ QPT + D + D P R + LP K E T
Sbjct: 78 NLYIKEETTIPEADAQPTGNGITDLFFD----DESPGPRKRVLVFDEADLPKTLKI-ELT 132
Query: 87 SGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSSTVCSVFGKTGDLEASSQQGTASLYSE 146
G + + HK + D+ N +++ + T+ +F T SS + SL ++
Sbjct: 133 DDGKNASAEKTHKDILEDSLDNPKFTHKKDPDDETIDDLFKST--FGRSSVEEYYSLNTD 190
Query: 147 KDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSL-- 204
D++ + ++ E +E+ +++ +NL +G++K
Sbjct: 191 DDHL---TPEEEEDSINTFEYDEN----------------RKVDNENLTVGNQKYEPAED 231
Query: 205 -LDSSKRMRLLQ-DSVAGVKNCEEEADTTSKFE-------WLDPSKIRDANRRRPDDPLY 255
+D +R + + + + +E + ++ W+DPS I+D + RP D Y
Sbjct: 232 HIDDREREKYMTCKASTDSRGFKEYVENYYRYRISFLFPPWIDPSNIKDIDGNRPTDENY 291
Query: 256 DKRTLYIPPEALK--------KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIG 307
+ TL+IPP+ K + +Q+W +K + D LLFFK+GKFYEL+ DA I
Sbjct: 292 NPSTLWIPPKGHKWATEFKSCHYTECMQQWWKLKQSHFDSLLFFKMGKFYELFYHDACII 351
Query: 308 HK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH-- 363
L W G VG E + V GYKV IEQ ET +Q + R+
Sbjct: 352 QSLCSLRWM----GSETKPHVGFPEKSLHTYASTCVDAGYKVVVIEQTETPQQLEQRNKT 407
Query: 364 ---TNSVISRKLVNVVTPST-TVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
++ + R + ++TP T T +G + L+ I E D+ +D +
Sbjct: 408 EGTSDKAVKRDICEIITPGTITRPEMLGKQSRPLVFISEDE---DSTGEYLALLSIDVSM 464
Query: 420 LRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAM 479
++ G I + L L+ + P EV+ + + L +A L E+T M
Sbjct: 465 SKIRYGVIRKTRDWSGLKTTLIHLCPAEVVVQ-KALMADAS-LLHSIRTLPYPPEITTHM 522
Query: 480 AVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV 539
TD ++ + +L Q + + + P E S+L ++LD +
Sbjct: 523 N-TDVQESLLLSRLPQTD--YVSTCKPVIFLSE----------------SYLRCILLDKL 563
Query: 540 LRNGDILPYKVYR-DCLRMDGQTL-------------------YLDSCVTSSGKRLLRSW 579
+ I P + D + +D L YL+ T+ G+RLLR+W
Sbjct: 564 IEYCSIEPIEFSEVDAMNLDASALTHLELFLSQEGTVQNSLFKYLNKTATAFGERLLRTW 623
Query: 580 ICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ PL ++E IN R + V +LM+++ + Q L+ PDLER LG++
Sbjct: 624 LLSPLVNIESINQRSECVTFLMEHNSFSASLQQQLKAFPDLERALGKI 671
>gi|333370923|ref|ZP_08462893.1| DNA mismatch repair protein MutS [Desmospora sp. 8437]
gi|332976873|gb|EGK13695.1| DNA mismatch repair protein MutS [Desmospora sp. 8437]
Length = 890
Score = 216 bits (549), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 230/836 (27%), Positives = 359/836 (42%), Gaps = 145/836 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR--QVGISESG 332
+QY ++K+ + D LFF++G FYE++ DA +EL+ +T G R G+
Sbjct: 29 QQYLSIKADHPDAFLFFRLGDFYEMFFEDARKAAEELEITLTSRDGGGERIPMCGVPFHS 88
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+D + +L+ +GYKV EQ+E AK V V V+TP T ++
Sbjct: 89 VDVYISRLIGKGYKVAICEQVEDPATAKGVVRREV-----VRVITPGTVMEEK------- 136
Query: 393 LLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+L +E N Y A D + +V + D A + L PKEV+
Sbjct: 137 MLTERENNFLAALTRQREHYALAAADLSTGEFYVTDVAGDG--ARVIDELAAYQPKEVLL 194
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSP 506
L KE A + +T D L + E + + L +F ++P
Sbjct: 195 AP-CLGKETSLLEELRLRLGAVITVTG----EDELQSPEERSRM-LGEHFPEDREQLTTP 248
Query: 507 WSKALENVMQHDIGFSALGGLISHLSRL--------MLDDVLRNGDILPYKVYRDCLRMD 558
+ + ++ + + GL SH++R+ M+ DV + + R+ R +
Sbjct: 249 IQEEVACLLLSYLQRTQKRGL-SHMNRIRRYDAEQFMVLDVSARQTLELTRSLREG-RKE 306
Query: 559 GQTLY--LDSCVTSSGKRLLRSWICHPLKD----------VEGINNRLDVVE-------- 598
G TLY LD T+ G RLL+ W+ PL D ++ + + L ++E
Sbjct: 307 G-TLYGLLDRTATAMGSRLLKKWLDKPLLDLNEIRRRQEEIQALTDHLILLEEIREQLKG 365
Query: 599 ------------YLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCI-------VL 639
Y N ++ + + L K+PDL+R L A S V+
Sbjct: 366 VYDLERLCARIAYGSANGRDLISLRRSLEKIPDLKRCLSETNASALVSVAEGLDPLQEVV 425
Query: 640 PLIGKKVLKQQ-VKVF-GSLVK-GLRIAMDLLMLMHKEGH-IIPSLSRIFKPP--IFDGS 693
L K + + V V G+L+K G +D L + ++G I L + + I
Sbjct: 426 ELTAKSIADEAPVSVREGNLIKDGYDEELDRLREVQRDGRGWITRLEQREREATGIRSLK 485
Query: 694 DGLDKFLTQFEAAIDSDF----------------------PDYQNHDVTDLDAETLSILI 731
G +K + ++ P+ + + L+AE S+ +
Sbjct: 486 VGFNKVFGYYIEVTKANLRHLPEGRYQRKQTLANAERFVTPELKERERLILEAEEKSVEL 545
Query: 732 E--LFIEKASQWSEVIHAISCI-------DVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
E LF + +E I I + D L S A + K V
Sbjct: 546 EYQLFTRVRERVAEEIPRIQMLADRVARLDALHSLAAVSG---------------KYGYV 590
Query: 783 RQD-NGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
R D N ++I G HP G VPND + ++ L L+TGPNM GKST
Sbjct: 591 RPDVNREGRIRITGGRHPVVEAATREGEFVPNDTRMDQEEHQLL----LITGPNMAGKST 646
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R L ++AQ+GCFVP + + + D IFTR+GA D ++ G STF+VE ET L
Sbjct: 647 YMRQVALITLMAQIGCFVPAQRAEIGIVDRIFTRIGAADDLVGGRSTFMVEMDETRLALA 706
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
+AT SL++LDE+GRGTST+DG A+A+A+ + + + + LF+THYH LT A P V
Sbjct: 707 QATSRSLILLDEVGRGTSTYDGMALAHAIVEYIHDHVGAKTLFSTHYHELTHLEADLPRV 766
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H C K E+VFL+R+ G SYG+ VA +AG+P +V+ A
Sbjct: 767 VNLHARCVEKEG---------EVVFLHRMEPGGADRSYGIHVAQLAGMPAEVIRRA 813
>gi|444321562|ref|XP_004181437.1| hypothetical protein TBLA_0F03840 [Tetrapisispora blattae CBS 6284]
gi|387514481|emb|CCH61918.1| hypothetical protein TBLA_0F03840 [Tetrapisispora blattae CBS 6284]
Length = 1256
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 158/542 (29%), Positives = 252/542 (46%), Gaps = 80/542 (14%)
Query: 217 SVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQ 276
+V K+ + + +++WL I+DA DP YD RTLYIP A K + +KQ
Sbjct: 279 NVPAPKHSKFVKENEQRYQWL--VNIKDAQGHEESDPDYDPRTLYIPSSAWGKFTPFEKQ 336
Query: 277 YWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDA 336
YW +KS+ D ++FFK GKF+ELYE DA + + DWKI G + GI E D
Sbjct: 337 YWEIKSKMWDCIVFFKKGKFFELYEKDAILANNLFDWKIAGGGRANMQLAGIPEMSFDHW 396
Query: 337 VEKLVARGYKVGRIEQLETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTIGPD--AVHL 393
+ + GYKV +++Q E+ + R T ++ R+L V+T T DG + A +
Sbjct: 397 SSQFIQLGYKVAKVDQRESMLAKEMREGTKGIVKRELEYVLTSGTLTDGDMLQSDLATYC 456
Query: 394 LAIKE--GNCGPDNGSV----------VYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
LA++E GN D+ + ++G AF+D A + + DD+ C+ L L+
Sbjct: 457 LAVREEPGNYYGDDDTFKTPGLSLSKKIFGVAFIDTATGLLEMLEFEDDSECSQLETLMS 516
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGY 499
Q+ PKEV+ E L A K + KF+A A+ L P F + +LV +
Sbjct: 517 QIKPKEVLIEKNNLSNLANKIV-KFNASPNAIFNYLKPEEEFFGFDKTYD--ELVSNDPP 573
Query: 500 FNGSSSPWSKALENVM--QHDIGFSALGGLISHLSRLMLDDVLRN-GDILPYKVYR--DC 554
+ ++ W K L+ + +GFSA GGL+ +L L LD L + G+I Y + +
Sbjct: 574 YFATNDDWPKVLKEYYDSKKKVGFSAFGGLLYYLRWLKLDKSLISMGNINEYNPIKSQNS 633
Query: 555 LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
L +DG TL L+ VT GKR+LR W+ HPL + I R
Sbjct: 634 LILDGVTLQNLEIFANSFDGSDKGTLFKLLNQGVTPMGKRMLRKWVIHPLFNKSAIEQRQ 693
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVF 654
D +E L+ + E+ + L LPDLER+L R+ + ++K+F
Sbjct: 694 DSIELLLSDMELRELFESKLSVLPDLERMLARIHSG-----------------NLKMKLF 736
Query: 655 GSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDY 714
+++G + ++L+ + F+ L FL+Q ++ +D ++
Sbjct: 737 EKVIQGFEVIVELIEQLKS----------------FELKGALKTFLSQVPESLFNDVKNW 780
Query: 715 QN 716
N
Sbjct: 781 SN 782
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 160/287 (55%), Gaps = 21/287 (7%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV---LKIKG 795
+ W I+ IS ID L + T+ +P + + + GG + LK K
Sbjct: 913 TSWMPTINMISNIDCLLALTRTSESIGFPACKPKFIDN-----IDEKTGGNLNGYLKFKS 967
Query: 796 LWHP-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
L HP F LG + +PND+ LG+D +P+ LLTG N GKST+LR TC+AVI+AQ
Sbjct: 968 LRHPCFNLGSSTYRDFIPNDVELGKD----VPQLGLLTGANAAGKSTVLRMTCIAVIMAQ 1023
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
LGC+VPCE L+ D I TRLGA D IM G+STF VE +ET +L AT SL+++DEL
Sbjct: 1024 LGCWVPCEEAELTSIDRIMTRLGANDNIMQGKSTFFVELSETKKILDTATNRSLLVVDEL 1083
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRG S+ DG+AIA +V + I FATHY L F SHP + M +
Sbjct: 1084 GRGGSSSDGFAIAESVLHHVATHIQSLGFFATHYGNLGLSFKSHPQIRELKMQILVDDKT 1143
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
N + FLY+L +G S+G+ VA M G+P+++V+ A AA
Sbjct: 1144 RN-------VTFLYKLINGQSEGSFGMHVASMCGIPKEIVDRAQDAA 1183
>gi|255084495|ref|XP_002508822.1| predicted protein [Micromonas sp. RCC299]
gi|226524099|gb|ACO70080.1| predicted protein [Micromonas sp. RCC299]
Length = 1419
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 161/257 (62%), Gaps = 12/257 (4%)
Query: 774 LPQSKNPAV--RQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLL 830
P+S P+V + +G P L L HP A G VPND LG D LLL
Sbjct: 1120 FPESCTPSVIAPEPSGTPSLDAVRLRHPCAPALAAGESFVPNDTKLGGGGDAPF---LLL 1176
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNMGGKSTL+R CLA I+A +G VP ++ AD IF R+GA D I+ G+STF+
Sbjct: 1177 TGPNMGGKSTLIRQVCLAAIMAHVGADVPAASFSMTAADAIFVRMGAKDNIIAGQSTFMT 1236
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E ET+++L++AT SLV +DELGRGTST DG AIA AV LV+ + R +F+THYH L
Sbjct: 1237 ELAETSAMLRRATSHSLVAMDELGRGTSTSDGAAIASAVSDHLVD-LGARTMFSTHYHRL 1295
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
+ A+ V L HM C + + G +E+ FLY+LT G+CP SYG+ VA +AG+P+
Sbjct: 1296 ADDRANDARVRLGHMGCDVRGET-----GAEEVTFLYKLTQGSCPRSYGVNVARLAGLPE 1350
Query: 1011 KVVEAASHAALAMKKSI 1027
VV+AA+ A+ M++++
Sbjct: 1351 DVVQAAAKASKEMEEAM 1367
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 197/481 (40%), Gaps = 79/481 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK---------KMSASQKQYWNVKSQY 284
F WL P K RDA+ RRP DP YD TL +P K +S Q Q+W K+ +
Sbjct: 399 FPWLQPDKRRDASGRRPSDPEYDPTTLQLPGAFPKCKDATGKPFTVSPGQAQWWRFKAAH 458
Query: 285 MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
D ++ FK+GKFYEL+E+DA +G +L + G+ G E E+L G
Sbjct: 459 FDSVIMFKMGKFYELFEMDAHVGAADLGLQYMK---GEQPHCGFPEKNYAANAERLARAG 515
Query: 345 YKVGRIEQLETSEQAKARHT------NSVISRKLVNVVTPSTTVDGTI---GPDAVHLLA 395
++V +EQ ET Q AR ++V+ R+ V V+T T VD + PDA + +A
Sbjct: 516 HRVVVVEQTETPAQLAARKAADKSVKDNVVMREKVAVLTRGTLVDAGMTDASPDATYCVA 575
Query: 396 IKE------GNCGPDNGSVV--------------YGFAFVDCAALRVWVGTINDDASCAA 435
I E N P G DCA R +G +DA
Sbjct: 576 ILEVEDKPVENRAPKTDGADDGDDDGDDDEPARWMGVCAADCATGRFLLGAWREDAFAGG 635
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ 495
L L + P E++ G ALR + ++ L+ A A + D V++L
Sbjct: 636 LRGALAALKPVEIVCAPGGATPRVMPALRDATPDASIRSLSAASASSLHPD-DVVERLTG 694
Query: 496 LNGYFNGSSSPWSKALENVM----QHDIGFSALGGLISHLSRLMLD---------DVLRN 542
+GYF + P + A + A G + +L+ M+D + +
Sbjct: 695 ADGYFQSGALPEALATFGASTTRGERAAALGAFGVMTGYLADAMIDRDLIPLGRVEAIPG 754
Query: 543 GDILPYKVYRDC-LRMDGQTLY-------------------LDSCVTSSGKRLLRSWICH 582
D + R + +D L LD C + G+RLLR W+C
Sbjct: 755 PDAAGIEAARGGFVALDAAALVGLEVLEGSDGGCVGSLLNALDRCAGAMGRRLLRRWVCR 814
Query: 583 PLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLE----RLLGRVKARVQASSCIV 638
PL+ + R V + + V + LR PDLE RL+G+ R + ++ +V
Sbjct: 815 PLRSAAAVAARQAAVREMRSEKDAVAEARRALRAAPDLERAASRLVGQSGGRGRDAANVV 874
Query: 639 L 639
L
Sbjct: 875 L 875
>gi|169773547|ref|XP_001821242.1| DNA mismatch repair protein Msh6 [Aspergillus oryzae RIB40]
gi|238491536|ref|XP_002377005.1| DNA mismatch repair protein Msh6, putative [Aspergillus flavus
NRRL3357]
gi|83769103|dbj|BAE59240.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697418|gb|EED53759.1| DNA mismatch repair protein Msh6, putative [Aspergillus flavus
NRRL3357]
gi|391869161|gb|EIT78363.1| mismatch repair ATPase MSH6 [Aspergillus oryzae 3.042]
Length = 1201
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/438 (32%), Positives = 220/438 (50%), Gaps = 54/438 (12%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + IRD + P P YD RTLYIPP A K S +KQYW +K ++ D ++FFK
Sbjct: 275 RYAWL--ANIRDIDGHSPGHPDYDPRTLYIPPLAWAKFSPFEKQYWEIKQKFWDTVVFFK 332
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 333 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 390
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
+E++ + K + VI R+L +V+T T V+G++ D + + +AIKE
Sbjct: 391 IESALGKEMRERDGKKGGKEDKVIRRELSSVLTAGTLVEGSMLQDDMSTYCVAIKEAII- 449
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+G AFVD A + ++ DDA + Q P+E++ E + +QKA
Sbjct: 450 --EDFPAFGLAFVDTATGQFFLSEFVDDADMTKFETFVAQTRPQELLLEKSTV---SQKA 504
Query: 463 LR--KFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENV 514
LR K + G + L P +F +A K + ++ YF + + W +AL
Sbjct: 505 LRILKNNTGPTTIWNHLKPG---KEFWEADITVKEMDVSEYFVSEDDDNLKAWPEALRAA 561
Query: 515 MQHDIGFSALGGLISH-LSRLMLDDVLRNGDILPYKVYRDC--LRMDGQTL--------- 562
++ SA G L+ + + D++ G+ Y + L +DGQTL
Sbjct: 562 RDKELVMSAFGALVQYLRLLKLDRDLITIGNFSSYDPIKKASSLVLDGQTLINMEIFANS 621
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L + + +
Sbjct: 622 FDGGSDGTLFQLLNRCITPFGKRMFKQWVCHPLIDAKKINARLDAVDALNADPNIRDQFS 681
Query: 612 QYLRKLPDLERLLGRVKA 629
L K+PDLERL+ R+ A
Sbjct: 682 SQLTKMPDLERLISRIHA 699
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 154/287 (53%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + IS +D L S A +S RP+ + ++ VL+
Sbjct: 877 FDEHYITWLAAVKIISQLDCLISLAKASSSLGQPSCRPVFVEDERS----------VLEF 926
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PNDI LG D + LLTG N GKST+LR TC+AVI+AQ
Sbjct: 927 EELRHPCLLSSVEDF-IPNDIKLGGDRANID----LLTGANAAGKSTVLRMTCVAVIMAQ 981
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 982 IGCYLPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1041
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF HP +T + M
Sbjct: 1042 GRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLAAEFEGHPEITPKRMKI------ 1095
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+ KV+E A AA
Sbjct: 1096 -HVDDEERRVTFLYKLEDGVAEGSFGMHCAAMCGISSKVIERAEVAA 1141
>gi|195021403|ref|XP_001985388.1| GH17031 [Drosophila grimshawi]
gi|193898870|gb|EDV97736.1| GH17031 [Drosophila grimshawi]
Length = 1201
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 173/303 (57%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL + A A L+ Q++ P
Sbjct: 883 LFEKFSNHYEQWKQCIDCVAMLDVLAALAEYARQQLVICVPELVSAQTQ----------P 932
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++++ +HP N +PN + LG +S+ L LLTGPNMGGKSTL+R L
Sbjct: 933 FIELEEGYHPCV---NPSTYIPNGLQLGTESEAPLS---LLTGPNMGGKSTLMRQLGLLT 986
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C +SL D IFTRLGA D I+ G STFLVE ET+ +L+ AT +SLV+
Sbjct: 987 IMAQIGAHIPAAACRMSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATSNSLVL 1046
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V L + CR LF+THYH L F VTL HMAC
Sbjct: 1047 LDELGRGTATYDGTAIAASVVNFLAS-LKCRTLFSTHYHNLIDFFHMDKRVTLGHMACMV 1105
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+ +++ A A+A++
Sbjct: 1106 E-NEDNTDPTQETVTFLYKYTAGACPKSYGFNAAKLAGMSHGIIKRAYELSKKVEAIALQ 1164
Query: 1025 KSI 1027
+ I
Sbjct: 1165 RKI 1167
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 167/548 (30%), Positives = 246/548 (44%), Gaps = 78/548 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 232 KLEFLQPDKIKDKAGRRPDHPEYDKSTLHVPEKFLNSLSPGVRQWWILKSDNYDCVLFFK 291
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY DA++G KEL + G+ G E D L+ RGYKV R+EQ
Sbjct: 292 VGKFYELYHSDADVGVKELGFTYMR---GEFAHSGFPEISFDKMSTILIDRGYKVARVEQ 348
Query: 353 LETSEQAKAR-------HTNSVISRKLVNVVTPSTTVDGT---IGPDAV--HLLAIKEGN 400
ET + R + V++R++ + T V G+ IGP+ ++LAI E +
Sbjct: 349 TETPDMMTERCKLIKPTKFDKVVAREICQITDRGTQVFGSQCAIGPNHQPNYMLAIVEQD 408
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G + YG F+D + VG +DD SC+ L LL P +++E L Q
Sbjct: 409 EGTWSK---YGICFIDTSIGDFHVGEFDDDKSCSRLLTLLSHHMPVLLLHEKSALSARTQ 465
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG--SSSPWSKALENVMQHD 518
+ LR G E PA T A + KL+ Y G + + W L + MQ D
Sbjct: 466 QILRTVLGGILK-EQMPATG-TQLCSAEKTLKLLAERYYAGGGPAENNWPLVLRS-MQSD 522
Query: 519 -------------IGFSALGGLISHLSRLMLD---------------DVLRNGDI---LP 547
+ ALG I ++++ L+ D L+ +I L
Sbjct: 523 TDHLGLTPADHYKLALKALGQCIHYIAKCKLEPKVLPMARYQLYVPPDQLQLENIPAALA 582
Query: 548 YKVYRDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
+ R + +D TL LD+C T GKRLL W+C P D+ + R
Sbjct: 583 STLRRSHMVLDATTLSNLRIVGEEHSLLSTLDNCCTKFGKRLLHHWLCAPSCDLTVLRER 642
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV-----KARVQASSCIVLPLIGKKVL- 647
+ L+ + + + L +PD ER L ++ K QA + ++ L
Sbjct: 643 QQAIGELLSKPDELQQLRALLAPMPDFERHLAQIHLFGNKRVAQADHPDSRAIFFEEKLY 702
Query: 648 -KQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLTQFEA 705
KQ+++ F S++KG A+ L LM K+ L R+ + P GS L K L F+
Sbjct: 703 NKQKLRSFMSILKGFG-ALTQLPLMFKDCE-TSLLQRLTQLPTDGGSFPDLSKQLKFFQH 760
Query: 706 AIDSDFPD 713
A D + D
Sbjct: 761 AFDHEAAD 768
>gi|268560892|ref|XP_002646315.1| C. briggsae CBR-MSH-2 protein [Caenorhabditis briggsae]
Length = 790
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 158/534 (29%), Positives = 255/534 (47%), Gaps = 85/534 (15%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKL 617
TLY L+ C T G++LLR W+ PL +V+ IN RLDVVE L +N + + +L ++
Sbjct: 298 TLYNVLNKCKTLPGEKLLRDWLSRPLCNVDHINERLDVVEALSENQTIRQKLHDSFLARM 357
Query: 618 PDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHI 677
PD +L R L+ K L+ + + + + + L+ L E
Sbjct: 358 PDCSQLARR--------------LMRKCTLQDLNRFYQAATLLESVELQLIHLSEDE-RF 402
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEK 737
S+ R+ K + +++FL + D D+ +D F+ +
Sbjct: 403 SASIDRLLKSEVTSILKKVERFLVLCDEFFDFDYEKEHKEIRVRVD----------FVPE 452
Query: 738 ASQWSEVIHAISCI-DVLRS----------------------FAVTASMSSGAMHRPL-I 773
+ SE + + I + LR F VT + + I
Sbjct: 453 IQEISEKLEQVEKIAEKLRKKYSSKFECENMKLDKNSLYGYYFRVTLKDEKAIRKKDVQI 512
Query: 774 LPQSKNPAVR---------QDN------GGPVLKIKGLWHPFALGENGGLP-VPNDILLG 817
L +K V+ D G L++K HP + N P +PND++L
Sbjct: 513 LETTKGSGVKFTVSDLTEINDEPQLLPLGSKCLELKQCRHP-VIERNSEKPFIPNDVILK 571
Query: 818 EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA 877
E+ R ++LTG NMGGKST LR+ L+++LAQ+G FVPC ++S+ D IFTR+GA
Sbjct: 572 EN------RLIVLTGANMGGKSTYLRSAALSILLAQIGSFVPCSSAMISVVDGIFTRVGA 625
Query: 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI 937
+D+ G STF+ E + +++LQ+AT++S V++DELGRGTSTFDG+ IA A+ + ++ RI
Sbjct: 626 SDKQSQGISTFMAEMLDCSAILQRATENSFVVIDELGRGTSTFDGFGIASAIAQDILNRI 685
Query: 938 NCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPES 997
C +FATH+H + K A P M ++N ++ LY++ G S
Sbjct: 686 KCLCIFATHFHEMGK-LAEQPGAIALQMGIQIENN---------QIHMLYKVFEGIAQRS 735
Query: 998 YGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTI 1051
+GLQVA M G+ + V+ AS ++K + + ++ E S + + L+ I
Sbjct: 736 FGLQVAKMVGLDEDVINKASQLLENLQKKVIIDSEKKKELLESSDIRQSILRLI 789
>gi|302416361|ref|XP_003006012.1| DNA mismatch repair protein msh6 [Verticillium albo-atrum VaMs.102]
gi|261355428|gb|EEY17856.1| DNA mismatch repair protein msh6 [Verticillium albo-atrum VaMs.102]
Length = 1193
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/486 (30%), Positives = 238/486 (48%), Gaps = 73/486 (15%)
Query: 217 SVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQ 276
+V+ +K + + ++ WL + I D +R+ P DP Y+ ++YIPP A K S +KQ
Sbjct: 276 AVSKLKVKAHTQEPSDRYPWL--ANITDIDRKSPGDPEYNPSSIYIPPGAWNKFSPFEKQ 333
Query: 277 YWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDA 336
YW +K D ++FFK GKF+ELYE DA IGH+ D+K+T R VG+ ES +D
Sbjct: 334 YWAIKQNLWDTIVFFKKGKFFELYENDATIGHQLFDFKMT--DRVNMRMVGVPESSLDMW 391
Query: 337 VEKLVARGYKVGRIEQLETS----------EQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
V + VA+G+KV R++Q+E++ + AK++ + +I R+L ++T T V+G++
Sbjct: 392 VNQFVAKGFKVARVDQMESALGKEMRERDDQAAKSKKVDKIIRRELACILTGGTLVEGSM 451
Query: 387 GPD--AVHLLAIKEGNCGPDNGSVVYGF---AFVDCAALRVWVGTINDDASCAALGALLM 441
D A + AIKE S+ G D +V
Sbjct: 452 LQDDLATYCAAIKE--------SITDGIPSRTMFDLTKFETFVA---------------- 487
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALEL-TPAMAVTDFLDASEVKKLVQLNGYF 500
Q SP+E++ E L +A + L+ ++ + P + +FLDA ++ ++ GYF
Sbjct: 488 QTSPRELLLEKSLLSSKALRILKNNTSPTTIWNYRKPGL---EFLDADVTRRELETGGYF 544
Query: 501 NGSSSP---WSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYR--DC 554
+G W L + D+ S+LG L+ +L L ++ +L G+ Y R
Sbjct: 545 DGDGEREGGWPTVLAEAKEKDLAMSSLGALVKYLQLLKIEQSLLSQGNFEWYNPIRRNGT 604
Query: 555 LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
L +DGQTL L+ CVT GKRL R W+CHPL D++ IN RL
Sbjct: 605 LILDGQTLINLEVFANSANGSTEGTLFTLLNKCVTPFGKRLFRQWVCHPLCDIDRINERL 664
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVF 654
D V+ L + V + + K+PDLERL+ R+ A V V L G + ++ + +
Sbjct: 665 DAVDMLNSDRSVREQFSAQMTKMPDLERLISRIHAGVCRPDDFVKVLEGFEQIEYTMSLL 724
Query: 655 GSLVKG 660
G+ G
Sbjct: 725 GAWGGG 730
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F + W + I IS +D L S A +S RP + + ++
Sbjct: 867 EVASRFFRRFDTDYTTWLQAIRIISQLDCLVSLAKASSSLGEPSCRPQFVDEERS----- 921
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
+++ L HP L +PN I LG +S + LLTG N GKST+LR
Sbjct: 922 -----LVEFDELRHPCMLNTVSDF-IPNAIELGGNS----AKINLLTGANAAGKSTVLRM 971
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC AVI+AQ+GC+VP L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 972 TCTAVIMAQIGCYVPATSARLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILAEATP 1031
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + + C FATHYH L EF +HP V +
Sbjct: 1032 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHVGCIGFFATHYHSLATEFENHPEVRARR 1091
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + ++ + FLY+L G S+G+ A M G+ +++E A AA
Sbjct: 1092 MQI-------HVDEAERRVTFLYKLEDGVAEGSFGMHCAAMCGINNRIIERAEVAA 1140
>gi|294940586|ref|XP_002782821.1| DNA mismatch repair protein MSH6-1, putative [Perkinsus marinus ATCC
50983]
gi|239894872|gb|EER14617.1| DNA mismatch repair protein MSH6-1, putative [Perkinsus marinus ATCC
50983]
Length = 616
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 177/301 (58%), Gaps = 19/301 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
++ L + F + + +++ ++ +D L S + + +G+M RP IL ++ A
Sbjct: 310 MAQLFKDFHKHTIRLQDMVQRLATLDCLLSLSEASRPGAGSMCRPQILDPTEFTA----- 364
Query: 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
PV + HP + VPN + +G + P TLL+TGPNMGGKST+LR
Sbjct: 365 --PVFDLVEGRHPVIIVTIMEF-VPNSVEMGINGS---PTTLLVTGPNMGGKSTVLRLGA 418
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
AVI+AQLGC VP L+ D IFTR+GA D I+ +STFL+E ET +VLQ AT+ S
Sbjct: 419 TAVIIAQLGCRVPASSFKLTPVDRIFTRIGARDSILENKSTFLIELEETGAVLQHATKHS 478
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
L ++DELGRGTSTFDG AIA+AV ++ E I CR LFATHYH L ++ + H + L H A
Sbjct: 479 LAVIDELGRGTSTFDGAAIAHAVLERISESIGCRTLFATHYHQLAEDESLH-NTALYHQA 537
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
C + +E+ FLY+ T G CP+S+ + VA +AG+P+ +VEAA + +
Sbjct: 538 CLVNPAT-------REVTFLYKFTKGRCPQSHAMHVAKIAGLPEVIVEAAREMSTVFHSA 590
Query: 1027 I 1027
+
Sbjct: 591 V 591
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 23/162 (14%)
Query: 526 GLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPL 584
GL+ + L +VLRN D +++G L LD VT GKRLLR W+C PL
Sbjct: 24 GLVLDANALEQLEVLRNTDG----------KLEGSLLNQLDHTVTPFGKRLLRQWVCCPL 73
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGK 644
+ I+ RLDVV++L++ +E+V + +RKLPD+ER RV A + L L K
Sbjct: 74 RAKTDIDRRLDVVDWLLEKTELVADLRSRMRKLPDIERRQNRVFA-------LGLQLERK 126
Query: 645 KVLKQQVKV-----FGSLVKGLRIAMDLLMLMHKEGHIIPSL 681
VL +V+ F L+ L+ A L ++ + +P+L
Sbjct: 127 AVLYGEVESSRIAQFMELLAALKEADRCLAMVREGDGALPAL 168
>gi|118376906|ref|XP_001021635.1| MutS domain III family protein [Tetrahymena thermophila]
gi|89303401|gb|EAS01389.1| MutS domain III family protein [Tetrahymena thermophila SB210]
Length = 1368
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/294 (42%), Positives = 172/294 (58%), Gaps = 29/294 (9%)
Query: 727 LSILIELFIEKASQWSEVIH-AISCI---DVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
LS E F Q E+++ A++CI D L S A S++ +P +P+S N V
Sbjct: 1054 LSPFCERFFHLFYQNRELLYQAVNCIGELDCLCSLA-KCSLNLKIRCKPTFIPESLNKNV 1112
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
++ ++HP L EN VPND + ED+ C+ L+TGPNMGGKSTLL
Sbjct: 1113 --------FELIEMYHPQLLKENKKNLVPNDTIF-EDNVTCM----LVTGPNMGGKSTLL 1159
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R CLAVILAQLGCF+P + + D IF R+G ++ G+STFLVE ET ++++A
Sbjct: 1160 RQNCLAVILAQLGCFLPAKSFKTIIRDRIFCRIG----LLEGKSTFLVEMEETGDIVKEA 1215
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLV+LDELGRGTSTFDG +IAY V R LVE + C LF+THYH L EF + +V
Sbjct: 1216 TNQSLVLLDELGRGTSTFDGVSIAYGVLRYLVENVKCLTLFSTHYHMLVDEFKLYKNV-- 1273
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
Q F +Y +++ F Y+ G+ +S+G+ VA MAG+P V++ A
Sbjct: 1274 QSYVMDF-----DYCSQQKKIDFKYKYIKGSSEKSFGVNVAKMAGLPDSVIDKA 1322
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 520 GFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRS 578
FS L + + L LD + N DI + ++D T GKR+L+
Sbjct: 714 SFSLLDSTVQKNTFLHLDAHAIENLDIFEVNLQNRVTSEGSLMSFIDYTKTQFGKRMLKR 773
Query: 579 WICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIV 638
W+ +PLK ++ I R + +E LMK +V+ + L KL D+ER + ++ Q S +
Sbjct: 774 WLSYPLKSIQQIEQRQEAIEDLMKIEDVIEQFDKKLSKLGDVERQISKIFNSSQKSR--L 831
Query: 639 LPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
P + ++K SLV+ L+ ++L++
Sbjct: 832 KPTSFENFSNVRLKDAYSLVEDLKNLEEILLIF 864
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 39/252 (15%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
+L ++DA R DDP YD TL+IP + LKK + F+ G+
Sbjct: 302 FLTKKYLKDAEGRPVDDPEYDPSTLFIPIQELKKETP-----------------LFQFGR 344
Query: 296 FYELYELDAEIGHKELDWKITLSGV-GKCRQVGISESGIDDAVEKLVARGYKVGR-IEQL 353
+ + DA + K D I GV GK I ++ V++L+ + K ++Q+
Sbjct: 345 NFVCFYTDAILMKKLFDCYI---GVWGKRPVANIFDNHYRFYVKELLEKADKSCLVVDQV 401
Query: 354 ETSEQAKARHTNSVISRKLVNVVTPST---TVDGTIGPDAVHLLAIKEGNCGPDNGSVVY 410
+ S+ + +I R++ ++T T VD +A +L+ I E +
Sbjct: 402 QFSDD--RSNEQYLIKREVTQIITKGTYTDYVDNVEDYNARYLMCIVESETDHS-----F 454
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV--IYEN-----RGLCKEAQKAL 463
G +DC ++++ I +D + + +L ++ P E+ ++ N + +CK K
Sbjct: 455 GLVLIDCTTHQIYLDDIKNDPAGNQIRTILRKMKPVEIHSVFNNLSEQTKNICKTTCKPQ 514
Query: 464 RKFSAGSAALEL 475
F EL
Sbjct: 515 FTFDKSFEFYEL 526
>gi|403220570|dbj|BAM38703.1| uncharacterized protein TOT_010001218 [Theileria orientalis strain
Shintoku]
Length = 1014
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 172/302 (56%), Gaps = 20/302 (6%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E ++ F + + ++ ++I + +D L S A A S M RP + + KN
Sbjct: 685 EEEFYQHIVSEFHKNSYKFCKLIETAAALDCLSSLATVARNSPFQMVRPRVHSKDKN--- 741
Query: 783 RQDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
VLK+K +P FA VPND+ +G D ++C +++TGPNMGGKSTL
Sbjct: 742 -------VLKLKDSVYPLFAANSTSTGFVPNDVCIG-DFEECATPIIVITGPNMGGKSTL 793
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
LR L VI+ Q+G FV C S+ D++FTRLGA+D ++ G+STFLVE + +++L K
Sbjct: 794 LRQIALTVIMGQMGSFVSASSCEFSVVDSVFTRLGASDNLVEGKSTFLVELQDISNILSK 853
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT SL ++DELGRGTSTFDG AIA A + + +I CR +F TH+ + + +VT
Sbjct: 854 ATSSSLALIDELGRGTSTFDGTAIAAATLEK-ISKIGCRCVFTTHFQDVCRSAKEFKNVT 912
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
+ HMA +N + FLY+L G CP+S+GL VA +A +P V+ A A L
Sbjct: 913 MYHMAARVDEQEQN-------VEFLYKLVPGVCPDSHGLHVAKLAKIPDHVLRTARSARL 965
Query: 1022 AM 1023
+
Sbjct: 966 RL 967
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 120/444 (27%), Positives = 193/444 (43%), Gaps = 86/444 (19%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK--------KMSASQKQYWNVKSQYMDV 287
WL+ IRDA+ R+P + Y T++IPP+ + + +Q+WN+K + D
Sbjct: 74 WLEVKNIRDADGRKPTEEDYKVNTMWIPPKNHRWAYEFRSGHYTECMQQWWNIKQNHFDS 133
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ--VGISESGIDDAVEKLVARGY 345
L+FFK+G+FYEL+ DA I L + L +G + VG E I + V GY
Sbjct: 134 LVFFKMGRFYELFYHDACI----LQSLVNLRWMGSETKPHVGFPEKSIHTYAKACVNSGY 189
Query: 346 KVGRIEQLETSEQAKARHT-----NSVISRKLVNVVTPSTT-----VDGTIGPDAVHLLA 395
KV +EQ ET +Q + R+ N + R + ++T T +D P +L
Sbjct: 190 KVVVVEQTETPQQLEKRNKESGSYNKAVKRDVCEIITAGTVTRPEMLDRQSRP---LVLV 246
Query: 396 IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
KEG R+ V I+ S G+L Q K+ + G
Sbjct: 247 SKEGEN-------------------RMAVIAIDVSMSKMRFGSLKEQNQRKQ---QQFGQ 284
Query: 456 CKEAQKALRKFSAGSAALELTPAMAVTD--FLDASEVKKLVQLNGYF------NGSSSPW 507
E LR + + L PA V D + E+ K++++ Y NG S
Sbjct: 285 WNEQFSQLR-----TILMHLCPAEVVLDRELVKNQELAKMIKVLPYAPEVTSNNGESQHK 339
Query: 508 SKALENVMQHDIG----FSALGGLISHLSRLMLDDVLRNGDILPYKVYR-DCLRMDGQTL 562
S + ++++ + AL S+L +++D + + P +V + + MD L
Sbjct: 340 SLYEKVLLEYPVEGRECKEALKLAESYLKVILMDKLAEYCYVEPLQVSEMEVMNMDYSAL 399
Query: 563 -------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
Y+++ TS G+R+LR+W+ +PL + E I R + V +L N
Sbjct: 400 THLELFYTQEGTTKNSLFDYMNNTATSFGERMLRTWLLNPLTNAEAIERRSECVAFLFDN 459
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+V + Q L K PDLER LG+V
Sbjct: 460 YALVTTIKQDLDKFPDLERSLGKV 483
>gi|399216563|emb|CCF73250.1| unnamed protein product [Babesia microti strain RI]
Length = 1197
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 182/315 (57%), Gaps = 25/315 (7%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
+LIE F A +S+ I ++ ID L +FA ++ M +P + P
Sbjct: 884 FKLLIEEFTTFAPHFSKAIQIVAEIDCLSTFAYHVLCNNYLMCKPRLYPME--------- 934
Query: 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLG--EDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G P L ++ HP +G +PN + + ++S+ CL LLTGPNMGGKSTLLR
Sbjct: 935 GKPFLHLEDSKHPI-IGFIEPEFIPNSVCMNCHDESNICL----LLTGPNMGGKSTLLRQ 989
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
CL I+AQ+G FVP ++C ++L D IFTRLGA+D IM G+STF VE ET+ ++++A+
Sbjct: 990 ICLITIMAQIGSFVPAKICEMTLVDKIFTRLGASDSIMDGKSTFYVELEETSLMMEQASP 1049
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SL ++DELGRGTSTFDG AIA + + ++ CR +F+THYH + E ++L H
Sbjct: 1050 YSLAMIDELGRGTSTFDGMAIASSSLIYIANKLACRCIFSTHYHLICNEAKLVDSISLYH 1109
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
MA + S GD + FL++ T G C +S GL +A +AG+P+ V+ A + A +M+
Sbjct: 1110 MASSIMS-------GD--VKFLFKFTKGQCLKSQGLHIAKLAGIPECVLSVAQNIAESME 1160
Query: 1025 KSIGESFKSSEQRSE 1039
+ ++ SE
Sbjct: 1161 IKVNRECSGNQLLSE 1175
Score = 149 bits (377), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 119/434 (27%), Positives = 206/434 (47%), Gaps = 54/434 (12%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK--------KMSASQKQYWNVKSQYMDV 287
W+ P I+D++ RRPD Y+ T+ IPP K + + KQYW++K+ + D
Sbjct: 278 WIQPQFIKDSSGRRPDCTSYNPSTMLIPPPTHKWINEYRNVHYTPTMKQYWSIKATHFDK 337
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ--VGISESGIDDAVEKLVARGY 345
L+ FK+G+FYE++ +DA I HK D L +GK + +G E + K+VA GY
Sbjct: 338 LVLFKMGRFYEIFYIDACIAHKLCD----LRWMGKESKPHIGFPEQSLQFYASKMVASGY 393
Query: 346 KVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGTIGP-DAVHLLAIKEG 399
KV +EQ+ET ++ + + VISR + +++ T + + P ++ LL+I
Sbjct: 394 KVVVVEQMETPKEMLEKKKGMKWSEKVISRDVCQILSKGTLLHSAMLPSESQPLLSIAFK 453
Query: 400 NCGP----DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
+ P D +G VD + + + DD S L L +P E++Y +
Sbjct: 454 SSKPMFLGDQEYCNFGLCLVDVSTNSINLSFCMDDESRLNLRTTLAHANPAEILYIPSNV 513
Query: 456 CKEAQKALRKFSAGSAALELTPAMAVTDFL-DASEVKKLVQLN-----GYFNGSSSPWSK 509
+ + ++ L L P +++ + D ++++ +++ N N + S+
Sbjct: 514 NRNVVEIFKR-------LPLKPQLSLYEITEDDTDMEGIIEDNISSALNSINSDGTGISE 566
Query: 510 ALENVMQHDIGFSA-------LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL 562
A ++++ I ++ LG +I + + M D N L VY D L M TL
Sbjct: 567 ADKSLILRSIILASKYLADMQLGNVIKYSNVSMPDQYATNRLKLNTCVY-DHLEMFTTTL 625
Query: 563 ---------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
++D T+ G RLLR W+ P D+ IN+RLD VE+LM+N ++ +
Sbjct: 626 GEKKNSFFQFIDKTSTAFGSRLLRRWVSSPSTDLAVINSRLDSVEWLMENPQINNEIRTL 685
Query: 614 LRKLPDLERLLGRV 627
L D+ER +G +
Sbjct: 686 LCSCIDVERQMGAI 699
>gi|156094380|ref|XP_001613227.1| DNA repair protein [Plasmodium vivax Sal-1]
gi|148802101|gb|EDL43500.1| DNA repair protein, putative [Plasmodium vivax]
Length = 1289
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 189/334 (56%), Gaps = 42/334 (12%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN---------- 779
+ LF ++ +S +D L++FA A + A+ RP++ P +N
Sbjct: 928 MFHLFYAHYEKYVSACRLVSELDCLQAFAFVALNTPFALTRPVLHPMRRNGSGEGESGEE 987
Query: 780 --------PAVRQDNGGPVLKI--KGLWH---PFALGENGGLPV---------PNDILLG 817
+ Q + V + G H PF + EN PV N+I +G
Sbjct: 988 SSGQEVTAEQINQSSRSAVSAVCRGGTAHGKEPFLILENNIHPVVATLMPNFISNNIYMG 1047
Query: 818 EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA 877
+ + TLLLTGPNMGGKSTLLR T ++VILAQ+G FVP C L++ D IFTRLG+
Sbjct: 1048 CEQEK--QSTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCELTVVDKIFTRLGS 1105
Query: 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI 937
+D + G+STFLVE + +++L+++T+ SL ILDELGRGTS+FDG AIA + Q+ + +
Sbjct: 1106 SDNLFEGKSTFLVELEDISNMLKQSTKYSLAILDELGRGTSSFDGTAIALSTLEQISDVV 1165
Query: 938 NCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPES 997
CR +F+THYH L +E + ++ HM+ + + E +++FLY+ G CP+S
Sbjct: 1166 KCRCIFSTHYHLLVEEVKHNKKISNYHMSLSIDDHQE-------KIIFLYKFIKGVCPKS 1218
Query: 998 YGLQVAVMAGVPQKVVEAASHAALAMKKSIGESF 1031
+G+ +A +AG+P+++++ A H + +++ + F
Sbjct: 1219 FGIHIAKLAGLPKEIIDLA-HEKSTLFENVTDEF 1251
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/500 (27%), Positives = 233/500 (46%), Gaps = 83/500 (16%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPE----ALKKMSA----SQKQYWNVKSQYMD 286
+W+ P +RD N R PD+ YD T++ PP A++ A +Q+W +KS+ D
Sbjct: 282 KWVQPQYVRDLNLRTPDNADYDCSTIWTPPPDHPWAVEYKQAHYTPGMQQFWKIKSKNFD 341
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA + H L+W + G K +G E + +K++ G
Sbjct: 342 KIIFFKMGRFYEIFYIDACLMHTICGLNW---MGGEQK-PHLGFPEQSLHLYAKKVINSG 397
Query: 345 YKVGRIEQLETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPDAVHLLAIK 397
+KV IEQ+ET ++ + R+ + I R++ + T T + D + + +L+
Sbjct: 398 HKVVVIEQMETPKELEQRNKETCGPKDKAIKREINEIFTKGTILHDNMLSSETKYLVCFH 457
Query: 398 ----------------------EGNCGPDNGSVV----YGFAFVDCAALRVWVGTINDDA 431
G+ + SV +GF D A + VG NDD
Sbjct: 458 FDDIEDLDGGVVDVGVGGVGSLPGSSSQSDRSVKSKCNFGFVVSDIATSYIAVGYCNDDE 517
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
S L +L Q+ P E++Y ++ + KE L F A ELT AV+ F + +
Sbjct: 518 SRIELRTILAQLCPAEILYASKNINKEV---LSIFKNIPAEPELT---AVSSFPNI--IA 569
Query: 492 KLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKV 550
L ++ YF + P S LE + + A GG I +L L+LD + R I Y +
Sbjct: 570 SLDEIRKYF--ETIPPS--LEMHREQNSVICAFGGFIVYLRSLLLDKKIFRFCKIEHYDL 625
Query: 551 YR--DCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEG 589
++ + + +D L Y++ T+ G R +R WIC PL D
Sbjct: 626 FKRENYMVLDATALKHLEILETQSGETKNSLFDYVNKTCTNFGARNMRRWICSPLLDCTR 685
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQ 649
IN RLDVVE+L KN ++ ++ L+KLPD+ERLL ++ +QAS + ++
Sbjct: 686 INERLDVVEFLKKNEHILSLIRLKLKKLPDIERLLNKI--CIQASQSERGAVFFDNIVST 743
Query: 650 QVKVFGSLVKGLRIAMDLLM 669
++K F + + + +L+
Sbjct: 744 KLKEFMTFLNAFKEIGSMLI 763
>gi|328872398|gb|EGG20765.1| mutS like protein [Dictyostelium fasciculatum]
Length = 1237
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 195/326 (59%), Gaps = 23/326 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ-SKNPAVRQDNG-GPVLKIKGLWH 798
+S +I ++ +D L S A MS+G +LP+ S P + G P++++
Sbjct: 915 YSSMITKLALLDCLMSLA-KLGMSAG-----YVLPELSSEPGINVVEGRHPIVEM----- 963
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
LG+ GG VPN I L + R +++TGPNMGGKS+ +R T L VI+AQ+G +V
Sbjct: 964 --TLGQKGGSYVPNSIKLSSAEE----RAMIITGPNMGGKSSFIRQTSLIVIMAQMGSYV 1017
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
P E C + + D I+TR+GA D I G STF VE ET+ +L +AT +LVILDELGRGTS
Sbjct: 1018 PAESCTMGVFDAIYTRMGARDNIEHGSSTFFVELQETSQILAEATPRTLVILDELGRGTS 1077
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMAC--AFKSNSEN 975
T DG AIAY+ +VE++ C LF THY L++ +P +V+ HM+ ++N +N
Sbjct: 1078 THDGVAIAYSSLLYIVEQLKCFCLFVTHYPLLSQIENMYPQNVSNYHMSFLEEQQNNPDN 1137
Query: 976 YSKGDQ-ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
Q +++FLY++ GA SYG+ VA +A +PQ V+++A+ + +K+SI + ++
Sbjct: 1138 GQYQQQPKVIFLYKVVRGAAKNSYGINVATLANLPQPVIQSATLKSNELKQSITKKIFNN 1197
Query: 1035 EQRSEFSSLHEEWLKTIVNVSRVDCN 1060
+ ++F + ++ + VN S++D N
Sbjct: 1198 DSNNQFKQIIQQIKELSVNDSKIDQN 1223
Score = 69.7 bits (169), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 99/435 (22%), Positives = 177/435 (40%), Gaps = 92/435 (21%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K + ++QY ++K QY D +L + G Y+ + DAE+ +K L+ I V I
Sbjct: 306 KYTPLEQQYVDIKKQYPDTVLMVECGYKYKFFGNDAEVANKVLN--IYSYVVKNFLNASI 363
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVD---- 383
+ + +LV GYKVG +EQ+ET+ +A + RKL + T ST +D
Sbjct: 364 PTVRLYHHLRRLVQAGYKVGVVEQIETAALKAVSDSKGGPFERKLTRLYTTSTFIDDQVD 423
Query: 384 --------GTIGPDAVHLLAIKEGNC--GPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
I P+ +L+A E D+ + F + + + + +DD
Sbjct: 424 ESNNTLDFSNISPN--YLVAFYEDTQIKKIDSPTTRISFVAISVSTGEIIYDSFDDDLLR 481
Query: 434 AALGALLMQVSPKEVI----YENR-----------GLCKEAQKALRKFSAGSAAL----- 473
+ L L + P E++ Y+ + + K ++++ +
Sbjct: 482 SHLETRLTHLKPTEILLPPEYKQKQDDGTDHFIYSKFTRLTSKTIKQYCKTNNVRVQLMK 541
Query: 474 ------------------------ELTPAMAVTDFLDASEVKKLVQLNGY---FNGSSSP 506
E A++ LD+S++ L L Y FN +S
Sbjct: 542 ESLYDKDLSVSNITDLYDQFENNQETQTALSAALTLDSSQIVCLSVLTTYLKDFNQFNS- 600
Query: 507 WSKALENVMQHDIGFSALGGLISHLSRLMLD--DVLRNGDILPYKVYRDCLRMDGQTLY- 563
+ V + F LI L R +D ++L+N D + + +LY
Sbjct: 601 ----ILKVASNFKAFKISNHLI--LPRSTIDNLEILQNEDT----------KSEKGSLYW 644
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM----KNSEVVMVVAQYLR-KL 617
++ T +GKRL +WIC PL D+E I R + V+ L+ + + + ++ +L+ +
Sbjct: 645 VMNRTQTIAGKRLFLNWICKPLIDLELIKLRQESVKELLNCIVERVKSIELIGSFLKSSI 704
Query: 618 PDLERLLGRVKARVQ 632
PDL+R L +V + Q
Sbjct: 705 PDLQRNLSKVFYKSQ 719
>gi|15625578|gb|AAL04169.1|AF412833_1 mismatch repair protein Msh2 [Danio rerio]
Length = 936
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 203/756 (26%), Positives = 315/756 (41%), Gaps = 152/756 (20%)
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
AV ++ ++ G G D G V G +VD ++ V D+ + L ALL+Q+ PKE +
Sbjct: 143 AVGVVGVRLGT-GTD-GQRVVGVGYVDSTLRKLGVCEFPDNDQFSNLEALLVQIGPKECV 200
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
+ K + G L ++F V+ L +L G + S
Sbjct: 201 LPAGDSGGDLGKLKQVVQRGGI---LLTDRKKSEFTTKDIVQDLNRLLKARKGET--VSS 255
Query: 510 ALENVMQHDIGFSALGGLISHLSRLM--------------LDDVLR--NGDILPYKVYR- 552
A M+ I S L +I +L L L+ +R N + +++
Sbjct: 256 AALPEMEKKIAMSCLEAVIRYLELLADEANFGSFKMTTFDLNQYMRLDNAAVQALNLFQG 315
Query: 553 ---DCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
D L+ C T G+RL+ WI PL D I RLD+VE +++SE+
Sbjct: 316 SCDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERLDLVETFVEDSELRKS 375
Query: 610 VAQ-YLRKLPDLERLLG-------------RVKARVQASSCIVLPL---IGKKV------ 646
+ LR+ PDL R+ RV V +VL L GK
Sbjct: 376 CQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQLPNVVLALERYSGKHQVLLHAA 435
Query: 647 ----LKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQ 702
L + F + + +D+ + H E + PS F P + D + +D+
Sbjct: 436 FISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPS----FDPTLSDLRENMDRLEKA 491
Query: 703 FEAAIDS-------------------------------DFPDYQNHDVTDLDAET----- 726
+AA+ S + N T LD +
Sbjct: 492 MQAALSSAARGLGLEATKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFTTLDVQKNGVRF 551
Query: 727 ----LSILIELFIEKASQWSEVIHAI----------------------SCIDVLRSFAVT 760
LS L E + + ++ E +AI + +D + SFAV
Sbjct: 552 TNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIAQLDAVVSFAVV 611
Query: 761 ASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL--GE 818
+ + RP IL + G L +K HP ++ +PND+ GE
Sbjct: 612 SHTAPVPFIRPKIL----------EKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFISGE 661
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
++TGPNMGGKST +R + V++AQ+GCFVPC+ LS+ D + R+GA
Sbjct: 662 KMFH------IITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAG 715
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D + G STF+ E ETA++L+ A++DSL+I+DELGRGTST+DG+ +A+A+ + R+
Sbjct: 716 DSQIKGVSTFMAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLK 775
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
LFATH+H LT P V H+ D L LY++ G C +S+
Sbjct: 776 SFCLFATHFHELTALAQQVPTVRNLHVTAL---------TTDSTLTMLYKVKKGVCDQSF 826
Query: 999 GLQVAVMAGVPQKVVEAASHAALAMKK-----SIGE 1029
G+ VA +A P+ V+ A AL +++ S+GE
Sbjct: 827 GIHVAELASFPKHVIANAREKALELEEFQDISSVGE 862
>gi|51892895|ref|YP_075586.1| DNA mismatch repair protein MutS [Symbiobacterium thermophilum IAM
14863]
gi|81692094|sp|Q67NK1.1|MUTS_SYMTH RecName: Full=DNA mismatch repair protein MutS
gi|51856584|dbj|BAD40742.1| DNA mismatch repair protein [Symbiobacterium thermophilum IAM 14863]
Length = 875
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 179/313 (57%), Gaps = 30/313 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V DL+ E + + + ++ A++ +D L SFA AS+ RPL+
Sbjct: 529 VMDLEYELFVEIRQRVAAEVTRIQRSARAVAELDALASFAEVASLYGYC--RPLV----- 581
Query: 779 NPAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
+G VL++KG HP + E G VPND+L+ D R LL+TGPNMG
Sbjct: 582 -------DGSTVLELKGSRHPVLERVMEEGAF-VPNDLLV----DTGENRVLLITGPNMG 629
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKST++R LAVILAQ G FVP E + L D +FTR+GA+D + TG STF+VE TE A
Sbjct: 630 GKSTVMRQAALAVILAQAGSFVPAESAHIGLVDRVFTRVGASDDLATGRSTFMVEMTEVA 689
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
++L AT+ SLV+LDE+GRGT+TFDG +IA+A+ + + I CR LFATHYH L +
Sbjct: 690 NILHSATERSLVVLDEVGRGTATFDGLSIAWAITEHIHQAIGCRTLFATHYHELCE---- 745
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
L+ + K+ S + ++++FL +L G SYG+QV +AG+P VVE A
Sbjct: 746 -----LEGILPGVKNYSVAVMEKGEDIIFLRKLVRGGADRSYGIQVGRLAGLPASVVERA 800
Query: 1017 SHAALAMKKSIGE 1029
+++ GE
Sbjct: 801 REILATLEEQEGE 813
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 165/373 (44%), Gaps = 41/373 (10%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG------VGKCRQVGIS 329
QY +K QY D +LF+++G FYE + DAE+ +EL+ + L+G +G+ GI
Sbjct: 12 QYLQIKEQYPDCILFYRLGDFYETFMDDAELVARELE--LVLTGRDAGKDMGRVPMAGIP 69
Query: 330 ESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD 389
+ + +L+ +GYKV +QLE ++AK ++ R + VVTP T V+ + P+
Sbjct: 70 YHAAEAYIARLIEKGYKVAICDQLEDPKKAKG-----LVKRDVTRVVTPGTLVEPRLLPE 124
Query: 390 AVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
+ L AI G +G A VD + +N S L + ++ P+E
Sbjct: 125 KANNFLAAIAWSRTG-------FGLAVVDLSTGEFAAAQMNGADSLRLLLEEIGRLEPRE 177
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS--- 504
VI E GL E ++G A F A+ +KL + G N S
Sbjct: 178 VILEP-GLAAEPSVTGPLKASGIA----VSVFEGRHFNHANAYRKLTEHFGTANLSGFGC 232
Query: 505 ----------SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
LE + + +G + G + + M+ D ++ + RD
Sbjct: 233 EDLELATSAAGAALAYLEEMHKASLGHVS-GLAVYYPGDYMVLDPATRRNLELTRSLRDG 291
Query: 555 LRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
R +D VT+ G RLL+SW+ PL D+ I+ R + V L+ + + L
Sbjct: 292 GRRGTLLWVMDRTVTAMGARLLKSWLERPLLDLRQIHARHEAVGELVHRPVLRADLRALL 351
Query: 615 RKLPDLERLLGRV 627
+++ DLERL GRV
Sbjct: 352 QEVHDLERLAGRV 364
>gi|405123347|gb|AFR98112.1| DNA mismatch repair protein msh6 [Cryptococcus neoformans var.
grubii H99]
Length = 1213
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/511 (30%), Positives = 246/511 (48%), Gaps = 71/511 (13%)
Query: 195 NIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPL 254
N G + NS L +++R + ++ E++ ++ F++L IRD + RPDDP
Sbjct: 242 NKGSESNS-FLTAAERKK--------IQAKEDKRESEQCFDFL--VNIRDKDGNRPDDPD 290
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YDKR++ IP ++ + + +KQ+W +K + D +LFF+ GKFYELYE DA IGH+E D K
Sbjct: 291 YDKRSILIPKKSWTEFTPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIGHQEFDLK 350
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHT-------NSV 367
+T K + VG+ E ++ + K + G+KVG ++Q ET+ + R +
Sbjct: 351 LT--DRVKMKMVGVPEQSLEFWIAKFLGAGHKVGIVDQAETAIGMEMRTKAGQKSGGREI 408
Query: 368 ISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVG 425
+ R+L V T T VDG D HL++IKE + GP+ G+ +G D + +
Sbjct: 409 VRRELARVFTNGTIVDGGYLNSDDPNHLVSIKESSSGPE-GTSSFGICIADASTGEFSIS 467
Query: 426 TINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL 485
DD L + Q+ PKE+I+ L + LR S A + F
Sbjct: 468 FFEDDVCRTRLETMFRQIRPKELIHAKGNLSVMTTRLLRNILPSSTAWQ--------SFK 519
Query: 486 DASEV----KKLVQLNGYFNGSSSPWS--KALENVMQHDIGFSALGGLISHLSRLMLDDV 539
D E L L F+ + +A+ ++ +D+ +LGG++ +L L LD
Sbjct: 520 DGKEFYTAEDTLNLLPSIFSSEEGEGAIPEAIISLQDNDLAMESLGGMLFYLKSLNLDKD 579
Query: 540 L---RNGDIL-PYKVYRDCLRMDGQTL-------------------YLDSCVTSSGKRLL 576
L RN +I P K ++ + +DG+TL L CV+ SGKRL
Sbjct: 580 LFSQRNFNIYDPIKEGKNLI-LDGKTLGHMEVLVNNEGGTEGTLAELLQRCVSPSGKRLF 638
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC 636
+ W+ PL+D + IN RLD VE LM + Q + LPDLERL+ R+ A S
Sbjct: 639 KVWLRSPLRDADAINARLDAVEDLMNHPRFSGDFTQLCKGLPDLERLISRIHAGSVKQSD 698
Query: 637 IVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL 667
++ Q V+ F L KG+ +D+
Sbjct: 699 LL----------QVVESFSKLQKGIDNLIDM 719
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 147/284 (51%), Gaps = 23/284 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E F + W + ++ +D L S A +S RP + S
Sbjct: 869 LMEEFSKDRETWLTTVRVVAELDCLVSLAKASSDMDEPKCRPTFVSSS----------SA 918
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L HP + + ND+ LG + PR +LLTGPNM GKSTLLR T V
Sbjct: 919 FIDFRDLRHPSMCLRSDF--ISNDVQLGGEQ----PRQVLLTGPNMAGKSTLLRMTAAGV 972
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQLGC+VP LS D I TR+GA D + STF VE E + +L++A SLVI
Sbjct: 973 IMAQLGCYVPASEAKLSPVDKIQTRMGAYDNMFASASTFKVELDECSRILREAGPKSLVI 1032
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST+DG AIA AV + FATHY LT +FA HP++ HM
Sbjct: 1033 LDELGRGTSTYDGMAIAGAVLHHIATHSLPLGFFATHYGSLTDDFAYHPNIRRMHMQT-- 1090
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+ +++VFLY+L G S+G VA MAGVP VV
Sbjct: 1091 -----HVDDEQKQVVFLYKLIPGVAESSHGTHVARMAGVPLDVV 1129
>gi|17508447|ref|NP_491163.1| Protein MSH-6 [Caenorhabditis elegans]
gi|373220156|emb|CCD72556.1| Protein MSH-6 [Caenorhabditis elegans]
Length = 1186
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/294 (41%), Positives = 163/294 (55%), Gaps = 22/294 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F K W E + +S DVL S A+ A S M P + +P + D G
Sbjct: 867 VFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFNATDPYLIVDKG-- 924
Query: 790 VLKIKGLWHP-FALGENGGLP-----VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
HP AL + + N +G +LLTGPNMGGKSTL+R
Sbjct: 925 -------VHPCLALQSRNEVTQTTSFIANSTTMGASE----AAVMLLTGPNMGGKSTLMR 973
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T + ILA +G VP L+ D IFTR+GA DRIM GESTF +E ET +L+ AT
Sbjct: 974 QTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNAT 1033
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+ SL+++DELGRGTSTFDG AIA AV +++ + + CR F+THYH + F +HP+V L
Sbjct: 1034 KHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSICDSFTNHPNVRLA 1093
Query: 964 HMACAF-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
HM C K N+E+ + D + FLY L SG CP+SYG A +AG+ +VV A
Sbjct: 1094 HMKCVVDKENNEDPTMED--VTFLYELESGICPKSYGFYAAKLAGIDHQVVRNA 1145
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 142/528 (26%), Positives = 237/528 (44%), Gaps = 84/528 (15%)
Query: 175 DTPGMHRVVPRLKRILEDNLNIG-----DKKNSSLLDSSKRMRLLQDSVAGVKNCEEEAD 229
+TP ++ + K+++ D + DK + + +R R+++ + G KN E +
Sbjct: 146 NTPKSVKMAGKSKKVIPDGEAVSMAGVLDKMDKIMDGEGERKRIVEKTT-GAKNKAVELE 204
Query: 230 TTSKFE-----WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQY 284
+F+ +L P KIRD +R DP YD +TL++PP+ +K + +Q+W +KSQ+
Sbjct: 205 PAERFDHESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPPDFHQKQTPGHRQWWTMKSQH 264
Query: 285 MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
D +L FKVGKFYE Y +DA + L+ G G E ++L+ G
Sbjct: 265 FDTILLFKVGKFYETYHMDAVEVVRALNIAFMR---GSYAHAGFPEHAASKFADQLMNHG 321
Query: 345 YKVGRIEQLETSEQAKARHTNS-----VISRKLVNVVTPST----TVDG--------TIG 387
YKV RIEQ ET + + R+ + V+ R++ V + T +DG T+
Sbjct: 322 YKVARIEQTETPQMLEERNQKTKTKEKVVRREVCRVTSNGTRTYGVLDGVDLGSASSTLD 381
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
P A HLLAIKE + P+ G YG +D + +G DD + L LL V +
Sbjct: 382 PTAKHLLAIKEFH-NPETGKSSYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLANVIVVQ 440
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
I E RG K++ S +E L P F+ A +V ++V Y+ +S
Sbjct: 441 AIVE-RGSISSTTKSIINGILFSVPVEHLLPK---KQFMTAEDVVRIVSNEDYYGSDASE 496
Query: 507 WSKALENVMQH-----------DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKV---- 550
W + L+ +++ + SA G + +L ++D D+L ++ Y
Sbjct: 497 WPEVLKGMLEDSSILPKPSTDWQLALSAFGAIFWYLRDSLIDVDMLSMRNVTIYNSNSME 556
Query: 551 ---YRDCLRMDGQTLYLD--------------------------SCVTSSGKRLLRSWIC 581
++ + +G+ L LD C T G+RLLRSW+
Sbjct: 557 NDQKKEKIDWNGKNLILDGTALENLNIVPNGRDSHLTSLYYVINKCSTPFGRRLLRSWLL 616
Query: 582 HPLKDVEGINNRLDVVEYLMK--NSEVVMVVAQYLRKLPDLERLLGRV 627
P D + + R +++L+ S + L+K+PDL+RLL ++
Sbjct: 617 QPTCDPKKLEQRQKAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKI 664
>gi|47087243|ref|NP_998689.1| DNA mismatch repair protein Msh2 [Danio rerio]
gi|28278396|gb|AAH44370.1| MutS homolog 2 (E. coli) [Danio rerio]
Length = 936
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 204/756 (26%), Positives = 318/756 (42%), Gaps = 152/756 (20%)
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
AV ++ ++ G G D G V G +VD ++ V D+ + L ALL+Q+ PKE +
Sbjct: 143 AVGVVGVRLGT-GTD-GQRVVGVGYVDSTLRKLGVCEFPDNDQFSNLEALLVQIGPKECV 200
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
G Q L++ L LT ++F V+ L +L G + +
Sbjct: 201 LPA-GDSGGDQGKLKQVVQRGGIL-LTDRKK-SEFTTKDIVQDLNRLLKARKGETVSSAA 257
Query: 510 ALENVMQHDIGFSALGGLISHLSRLM--------------LDDVLR--NGDILPYKVYR- 552
E M+ I S L +I +L L L+ +R N + +++
Sbjct: 258 LPE--MEKKIAMSCLEAVIKYLELLADEANFGSFKMTTFDLNQYMRLDNAAVQALNLFQG 315
Query: 553 ---DCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
D L+ C T G+RL+ WI PL D I RLD+VE +++SE+
Sbjct: 316 SSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERLDLVETFVEDSELRKS 375
Query: 610 VAQ-YLRKLPDLERLLG-------------RVKARVQASSCIVLPL---IGKKV------ 646
+ LR+ PDL R+ RV V +VL L GK
Sbjct: 376 CQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQLPNVVLALERYSGKHQVLLHAA 435
Query: 647 ----LKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQ 702
L + F + + +D+ + H E + PS F P + D + +D+
Sbjct: 436 FISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPS----FDPTLSDLRENMDRLEKA 491
Query: 703 FEAAIDSDFPDY-------------------------------QNHDVTDLDAET----- 726
+AA+ S + N T LD +
Sbjct: 492 MQAALSSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFTTLDVQKNGVRF 551
Query: 727 ----LSILIELFIEKASQWSEVIHAI----------------------SCIDVLRSFAVT 760
LS L E + + ++ E +AI + +D + SFAV
Sbjct: 552 TNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIAQLDAVLSFAVV 611
Query: 761 ASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI--LLGE 818
+ + RP IL + G L +K HP ++ +PND+ + GE
Sbjct: 612 SHAAPVPFIRPKIL----------EKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFIRGE 661
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
++TGP+MGGKST +R + V++AQ+GCFVPC+ LS+ D + R+GA
Sbjct: 662 KMFH------IITGPSMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAG 715
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D + G STF+ E ETA++L+ AT+DSL+ +DELGRGTST+DG+ +A+A+ + R+
Sbjct: 716 DSQIKGVSTFMAEMLETAAILRSATEDSLITIDELGRGTSTYDGFGLAWAISEYIATRLK 775
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
LFATH+H LT P V H+ D L LY++ G C +S+
Sbjct: 776 SFCLFATHFHELTALAQQVPTVRNLHVTAL---------TTDSTLTMLYKVKKGVCDQSF 826
Query: 999 GLQVAVMAGVPQKVVEAASHAALAMKK-----SIGE 1029
G+ VA +A P+ V+ A AL +++ S+GE
Sbjct: 827 GIHVAELASFPKHVIANAREKALELEEFQDISSVGE 862
>gi|321263883|ref|XP_003196659.1| DNA mismatch repair-related protein [Cryptococcus gattii WM276]
gi|317463136|gb|ADV24872.1| DNA mismatch repair-related protein, putative [Cryptococcus gattii
WM276]
Length = 1210
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/511 (30%), Positives = 242/511 (47%), Gaps = 71/511 (13%)
Query: 195 NIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPL 254
N G + NS L + ++ ++ E++ ++ F++L IRD RPDDP
Sbjct: 239 NKGSESNSFLTAAERKK---------IQAKEDKRESEQCFDFL--VNIRDKEGNRPDDPD 287
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD+R++ IP ++ + + +KQ+W +K + D +LFF+ GKFYELYE DA IGH+E D K
Sbjct: 288 YDRRSILIPKKSWAEFTPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIGHQEFDLK 347
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHT-------NSV 367
+T K + VG+ E ++ + K + G+KVG ++Q ET+ + R +
Sbjct: 348 LT--DRVKMKMVGVPEQSLEFWIAKFLGAGHKVGIVDQAETAIGMEMRTKAGQKTGGREI 405
Query: 368 ISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVG 425
+ R+L V T T VDG D HL++IKE + GP+ G+ +G D + +
Sbjct: 406 VRRELARVFTNGTIVDGGYLNSDDPNHLVSIKESSGGPE-GTSSFGICIADASTGEFSIS 464
Query: 426 TINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL 485
DD L + Q+ PKE+I+ L + LR S A + F
Sbjct: 465 YFEDDVCRTRLETMFRQIRPKELIHAKGNLSVTTTRLLRNILPSSTAWQ--------SFK 516
Query: 486 DASEV----KKLVQLNGYFNGS--SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV 539
D E L L F+ S +A+ ++ + + +LGG++ +L L LD
Sbjct: 517 DGKEFYTAEDTLNLLPSIFSAEEDESTIPEAITSLQDNALAMESLGGMLFYLKSLNLDKD 576
Query: 540 L---RNGDIL-PYKVYRDCLRMDGQTL-------------------YLDSCVTSSGKRLL 576
L RN +I P K ++ + +DG+TL L CV+ SGKRL
Sbjct: 577 LFSQRNFNIYDPIKEGKNLI-LDGKTLGHMEVLVNNEGGIEGTLAELLQRCVSPSGKRLF 635
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC 636
+ W+ PL+D +GIN RLD VE LM + Q + LPDLERL+ R+ A S
Sbjct: 636 KIWLRSPLRDADGINARLDAVEDLMNHPRFSGDFTQLCKGLPDLERLISRIHAGSVKQSD 695
Query: 637 IVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL 667
+ Q V+ F L KG+ +D+
Sbjct: 696 FL----------QVVESFSKLQKGIDNLVDM 716
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 147/284 (51%), Gaps = 23/284 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E F + W + I+ +D L S A +S RP + S
Sbjct: 866 LMEEFSKDRETWLTTVRVIAELDCLVSLAKASSDLDEPKCRPTFVSSS----------SA 915
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L HP + + ND+ LG D PR +LLTGPNM GKSTLLR T V
Sbjct: 916 FIDFRDLRHPSMCLRSDF--ISNDVQLGGDQ----PRQVLLTGPNMAGKSTLLRMTAAGV 969
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQLGC+VP LS D I TR+GA D + STF VE E + +L++A SLVI
Sbjct: 970 IMAQLGCYVPASEARLSPVDKIQTRMGAYDNMFASASTFKVELDECSRILREAGPKSLVI 1029
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST+DG AIA AV L FATHY LT +FA HP++ HM
Sbjct: 1030 LDELGRGTSTYDGMAIAGAVLHHLATHSLPLGFFATHYGSLTDDFAYHPNIRRMHMQT-- 1087
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+ +++VFLY+L G S+G VA MAGVP VV
Sbjct: 1088 -----HVDDEQKQVVFLYKLIPGVAESSHGTHVARMAGVPLDVV 1126
>gi|221057249|ref|XP_002259762.1| DNA repair protein [Plasmodium knowlesi strain H]
gi|193809834|emb|CAQ40538.1| DNA repair protein, putative [Plasmodium knowlesi strain H]
Length = 1303
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 202/388 (52%), Gaps = 72/388 (18%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR------ 783
+ LF ++ +S +D L++FA A +S + RP++ P N V
Sbjct: 933 IFHLFYAHYEKYVSACRLVSELDCLQAFAFVALNTSFVLTRPILHPMRPNVNVEDGSIED 992
Query: 784 ----------------QDNGGPV-------LKIKGLW------HPFALGENGGLPV---- 810
D+ G + + + G PF + EN PV
Sbjct: 993 GNDEDGNVENGNDENGNDDTGEINQRNKSTVSVMGRSADSHGNEPFLILENNIHPVVATL 1052
Query: 811 -----PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
N+I +G ++ TLLLTGPNMGGKSTLLR T ++VILAQ+G FVP C L
Sbjct: 1053 MPNFISNNIYMGCKQEN--QSTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVPSTYCEL 1110
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
++ D IFTRLG++D + G+STFLVE + +++L+++T+ SL ILDELGRGTS+FDG AI
Sbjct: 1111 TVVDKIFTRLGSSDNLFEGKSTFLVELEDISNMLKQSTKYSLAILDELGRGTSSFDGTAI 1170
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A + Q+ + + CR +F+THYH L +E + +++ HM+ + E +++F
Sbjct: 1171 ALSTLEQISDVVKCRCIFSTHYHLLVEEVKHNNNISNYHMSLSIDDQQE-------KIIF 1223
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
LY+ G CP+S+G+ +A +AG+P+++++ A E+ + F ++ +
Sbjct: 1224 LYKFIKGVCPKSFGIHIAKLAGLPKEIIDLA-----------------HEKSTLFENVTD 1266
Query: 1046 EWLKTI--VNVSRVDCNSDDDDAYDTLF 1071
E+ K I N+ R ++ DD LF
Sbjct: 1267 EFCKIIKYKNIVRSLLSAPDDQKLGALF 1294
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 235/500 (47%), Gaps = 83/500 (16%)
Query: 235 EWLDPSKIRDANRRRPDDPLYDKRTLYIPPE----ALKKMSA----SQKQYWNVKSQYMD 286
+W+ P IRD N R PD+ YD T++ PP+ A++ A +Q+W +KS+ D
Sbjct: 287 KWVQPQYIRDLNLRTPDNADYDSSTIWTPPQDHPWAVEYKQAHYTPGMQQFWKIKSKNFD 346
Query: 287 VLLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
++FFK+G+FYE++ +DA + H L+W + G K +G E + +K++ G
Sbjct: 347 KIIFFKMGRFYEIFYIDACLMHTICGLNW---MGGEQK-PHLGFPEQSLHLYAKKVINSG 402
Query: 345 YKVGRIEQLETSEQAKARHTNS------VISRKLVNVVTPSTTV-DGTIGPDAVHLLA-- 395
+KV IEQ+ET ++ + R+ + I R++ + T T + D + + +L+
Sbjct: 403 HKVVVIEQMETPKELEQRNKETCGPKDKAIKREINEIYTKGTILHDNMLSSETRYLICFH 462
Query: 396 ------IKEGNCGPDNGSV------------------VYGFAFVDCAALRVWVGTINDDA 431
+ +G G NG V +GF D A + VG NDD
Sbjct: 463 FDDVEDLDDGVVGICNGGVGSLPGSSSQSERSIRSKCNFGFVVSDIATSYIAVGYCNDDE 522
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
S L +L Q+ P E++Y ++ + KE L F A ELT V+ F + +
Sbjct: 523 SRIELRTILAQLCPAEILYASKNINKEV---LSIFKNIPAEPELT---GVSSFPNI--IA 574
Query: 492 KLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKV 550
L ++ YF + P S LE + + A GG I +L L+LD + R I Y +
Sbjct: 575 SLDEIRKYF--ETIPPS--LEMHKEQNSVICAFGGFIVYLRSLLLDKKIFRFCKIEHYDL 630
Query: 551 YR--DCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEG 589
++ + + +D L Y++ T+ G R +R WIC PL D
Sbjct: 631 FKRENYMVLDATALKHLEILETQSGETKNSLFDYVNKTCTNFGARNMRRWICSPLLDCTK 690
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQ 649
IN RLDVV++L KN ++ ++ L+KLPD+ERLL ++ +QAS + ++
Sbjct: 691 INERLDVVDFLKKNEHILSLIRLKLKKLPDIERLLNKI--CIQASQSERGAVFFDNIVNT 748
Query: 650 QVKVFGSLVKGLRIAMDLLM 669
++K F + + + +L+
Sbjct: 749 KLKEFMTFLNAFKEIGSMLI 768
>gi|449446175|ref|XP_004140847.1| PREDICTED: DNA mismatch repair protein MSH3-like [Cucumis sativus]
Length = 1094
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 247/968 (25%), Positives = 402/968 (41%), Gaps = 203/968 (20%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIG------HKELDWKITLSGVGK 322
K + ++Q ++K +Y DVLL +VG Y + DA I + LD + +
Sbjct: 114 KYTPLEQQVVDLKKRYPDVLLMVEVGYRYRFFGQDAVIAARVLGIYAHLDHNFMTASIPT 173
Query: 323 CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSV--ISRKLVNVVTPST 380
R ++ V +LV+ GYKVG ++Q ET+ KA +N + R L + T +T
Sbjct: 174 FR--------LNVHVRRLVSAGYKVGVVKQTETAA-IKAHGSNKLGPFCRGLSALYTKAT 224
Query: 381 ---------TVDGTIGPDAVHLLAIKEG-------NCGPDNG-SVVYGFAFVDCAALRVW 423
+G G ++ +L + E +C +NG V G ++ + V
Sbjct: 225 LEAAQDLGGAEEGCAG-ESNYLFCLVENSMSVQNVDCRIENGVDVKIGMVAMEISTGDVI 283
Query: 424 VGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSA--------------- 468
G +D+ L A+L+ +SP E++ + + K +K L ++
Sbjct: 284 YGEYDDNFMRNGLEAMLLSLSPAELLLGD-PISKPTEKLLLGYAGPALNVRVERVSGDCF 342
Query: 469 --GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGG 526
GSA E+ M++ + +D + + G S S E V ++ AL
Sbjct: 343 KDGSALAEV---MSLYENIDQNNFTEDNNPEKVLVGQKSNRSAIKEIVNMPNLALQALAL 399
Query: 527 LISHLSRLMLDDVLR-NGDILPYKVYRDCLRMDGQTLY--------------------LD 565
I HL + L+ ++ P+ + + + G TL ++
Sbjct: 400 TIRHLKQFGLERIVSLASSFRPFSCKME-MTLSGNTLTQLEVLKNNDDGSETGSLLHCMN 458
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN-----------------SEVVM 608
+T G RLLR WI HPL D I R + V + + S+V++
Sbjct: 459 HTLTIFGSRLLRQWITHPLCDRNMIIARQEAVSEIAASMVSSKVSPNNRALDEEYSDVIV 518
Query: 609 V----------VAQYLRKLPDLERLLGRVKARVQASS----------------------- 635
+ V L + PD++R + R+ R A S
Sbjct: 519 IEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFHIDE 578
Query: 636 ----CIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH---IIPSLSRIFK-- 686
C +IG K+L++ + + S + IA LL + KE P+L I+
Sbjct: 579 EDDNCSSESIIGSKLLRKLI-LSASSSGLINIAAKLLSTISKEAADQGDFPNLMIIYSDQ 637
Query: 687 -PPIF-------DGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKA 738
P + + LD +T + + + + T + T I + + ++
Sbjct: 638 FPKVARARKEAQSAREKLDALITFYRKQL-----GMRKLEFTSVSGTTHLIELAIDVKVP 692
Query: 739 SQW--------------SEVIHAISCI----------------DVLRSF---------AV 759
SQW EV+ A+ + D LR F AV
Sbjct: 693 SQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAV 752
Query: 760 TASMSSGAMHRPLILPQSKN---PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL 816
A S ++ IL ++KN P D+ + + HP G G VPND L
Sbjct: 753 QALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIHLCSGRHPVLEGTLQGNFVPNDTNL 812
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
+ + C ++TGPNMGGKS +R L +++Q+G FVP L + D I+TR+G
Sbjct: 813 DANGEHC----QIVTGPNMGGKSCYIRQVALIALMSQVGSFVPAFSAKLHVLDGIYTRMG 868
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
A+D I G STFL E TET+ +L+ ++ SLVI+DELGRGTST DG AIAYA L+++
Sbjct: 869 ASDSIQQGRSTFLEEMTETSHILRHSSSRSLVIIDELGRGTSTHDGVAIAYAALHSLLQQ 928
Query: 937 INCRLLFATHY---HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
C +LF THY + KEF + V + KS S + K +++ +LY+L SG
Sbjct: 929 KKCLVLFVTHYPKVAEIAKEFPASAGVYHVSYLTSHKSPSLSGPKSTEDVTYLYKLISGV 988
Query: 994 CPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE--SFKSSEQR-SEFSSLHEEWLKT 1050
S+G +VA +A +P + A+ + +++ + KS+EQ +E S EW
Sbjct: 989 AESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEWQSF 1048
Query: 1051 IVNVSRVD 1058
+ R+D
Sbjct: 1049 QSFLERID 1056
>gi|270014976|gb|EFA11424.1| hypothetical protein TcasGA2_TC013601 [Tribolium castaneum]
Length = 1085
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 160/284 (56%), Gaps = 18/284 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ + F EK QW + I I+ +DVL S A A + P I P + + +NG
Sbjct: 779 IFQKFSEKREQWEQAIDCITVLDVLCSLAQYACNFGQDICIPEIEPMGNSDKIVIENG-- 836
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
HP + VPND +G LL+TGPNMGGKSTL+R +
Sbjct: 837 -------RHPCITNIDNF--VPNDTKMGVAD---FANILLITGPNMGGKSTLMRQIAIIC 884
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+A +G +VP C LSL D IFTRLGA D I+ G+STFLVE +E A +L AT SLV+
Sbjct: 885 IMAHMGGYVPASGCTLSLIDRIFTRLGAHDDIVQGQSTFLVELSEAAVMLHHATPHSLVL 944
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST DG AIA A +L INCR LF+THYH L F + V L HMAC
Sbjct: 945 LDELGRGTSTHDGNAIATAYVEKLTT-INCRTLFSTHYHSLVDHFEARRDVQLGHMACMV 1003
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+++ + ++ + FLY++ G CP+SYG VA ++G+ +V
Sbjct: 1004 ENDDD---PTEESVTFLYKMARGRCPKSYGFNVARLSGLKHCIV 1044
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 149/447 (33%), Positives = 218/447 (48%), Gaps = 58/447 (12%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
++ ++L P KIRD N+RRPDDP YD RTLYIP L+K + + +Q+W +KS +MD +LFF
Sbjct: 135 NRLDFLQPDKIRDVNKRRPDDPDYDPRTLYIPQSFLEKQTPAMRQWWVLKSTHMDSVLFF 194
Query: 292 KVGKFYELYELDAEIGHKELDW---KITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
KVGKFYELY +DA +G +L + K S G+ G ES L+ +G+KV
Sbjct: 195 KVGKFYELYHMDAVVGVTQLGFSYMKAFPSHTGEFAHSGFPESAYHKMANALIEKGFKVA 254
Query: 349 RIEQLETSE--------QAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH-----LLA 395
R EQ ET E Q +A + V++R++ + T +T V PDA+H + A
Sbjct: 255 RTEQTETPEMMAERCKKQGRATKFDKVVNREICQISTKATCVYTAQLPDAMHSQSCYMYA 314
Query: 396 IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455
I E + +G F+D + + +DD C+ L L + P ++ E + L
Sbjct: 315 IAEKDVT--GSQRRFGICFIDTSIGVFKLAEFDDDKHCSKLLVCLSEYPPGLILTERKKL 372
Query: 456 CKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNG-YFNGSSSP--WSKAL 511
+ + L L P + F AS ++KL LNG YF S+ + L
Sbjct: 373 SSKLKLILNTNYRDVRRESLAPE---SQFYGASTTIEKL--LNGNYFRNESNDLCLPEVL 427
Query: 512 ENVM-------QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPY---------KVYRDC 554
+NV + ++ ALGG + +L LD V+ G Y K R C
Sbjct: 428 KNVTDGYNAKPEFELMVKALGGCLWYLHDSKLDIQVVSLGKFEIYQPLEMNVREKSPRSC 487
Query: 555 LRMDGQTLY--------------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ +D T+ LD C T+ GKRLL WIC PL VE I R + V+ L
Sbjct: 488 MILDSVTIVNLNLLGEENSLQKTLDYCQTAFGKRLLTQWICRPLCVVEKIKERQEAVQEL 547
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+KN+ ++ L+KLPDLER L ++
Sbjct: 548 VKNTSLLKDAQDVLKKLPDLERQLAKI 574
>gi|182889828|gb|AAI65693.1| Msh2 protein [Danio rerio]
Length = 936
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 204/756 (26%), Positives = 318/756 (42%), Gaps = 152/756 (20%)
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
AV ++ ++ G G D G V G +VD ++ V D+ + L ALL+Q+ PKE +
Sbjct: 143 AVGVVGVRLGT-GTD-GQRVVGVGYVDSTLRKLGVCEFPDNDQFSNLEALLVQIGPKECV 200
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
G Q L++ L LT ++F V+ L +L G + +
Sbjct: 201 LPA-GDSGGDQGKLKQVVQRGGIL-LTDRKK-SEFTTKDIVQDLNRLLKARKGETVSSAA 257
Query: 510 ALENVMQHDIGFSALGGLISHLSRLM--------------LDDVLR--NGDILPYKVYR- 552
E M+ I S L +I +L L L+ +R N + +++
Sbjct: 258 LPE--MEKKIAMSCLEAVIKYLELLADEANFGSFKMTTFDLNQYMRLDNAAVQALNLFQG 315
Query: 553 ---DCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
D L+ C T G+RL+ WI PL D I RLD+VE +++SE+
Sbjct: 316 SSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERLDLVETFVEDSELRKS 375
Query: 610 VAQ-YLRKLPDLERLLG-------------RVKARVQASSCIVLPL---IGKKV------ 646
+ LR+ PDL R+ RV V +VL L GK
Sbjct: 376 CQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQLPNVVLALERYSGKHQVLLHAA 435
Query: 647 ----LKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQ 702
L + F + + +D+ + H E + PS F P + D + +D+
Sbjct: 436 FISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPS----FDPTLSDLRENMDRSEKA 491
Query: 703 FEAAIDSDFPDY-------------------------------QNHDVTDLDAET----- 726
+AA+ S + N T LD +
Sbjct: 492 MQAALSSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFTTLDVQKNGVRF 551
Query: 727 ----LSILIELFIEKASQWSEVIHAI----------------------SCIDVLRSFAVT 760
LS L E + + ++ E +AI + +D + SFAV
Sbjct: 552 TNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIAQLDAVLSFAVV 611
Query: 761 ASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI--LLGE 818
+ + RP IL + G L +K HP ++ +PND+ + GE
Sbjct: 612 SHAAPVPFIRPKIL----------EKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFIRGE 661
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
++TGP+MGGKST +R + V++AQ+GCFVPC+ LS+ D + R+GA
Sbjct: 662 KMFH------IITGPSMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAG 715
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D + G STF+ E ETA++L+ AT+DSL+ +DELGRGTST+DG+ +A+A+ + R+
Sbjct: 716 DSQIKGVSTFMAEMLETAAILRSATEDSLITIDELGRGTSTYDGFGLAWAISEYIATRLK 775
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
LFATH+H LT P V H+ D L LY++ G C +S+
Sbjct: 776 SFCLFATHFHELTALAQQVPTVRNLHVTAL---------TTDSTLTMLYKVKKGVCDQSF 826
Query: 999 GLQVAVMAGVPQKVVEAASHAALAMKK-----SIGE 1029
G+ VA +A P+ V+ A AL +++ S+GE
Sbjct: 827 GIHVAELASFPKHVIANAREKALELEEFQDISSVGE 862
>gi|91082687|ref|XP_971522.1| PREDICTED: similar to DNA mismatch repair protein muts [Tribolium
castaneum]
Length = 1079
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 160/284 (56%), Gaps = 18/284 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ + F EK QW + I I+ +DVL S A A + P I P + + +NG
Sbjct: 773 IFQKFSEKREQWEQAIDCITVLDVLCSLAQYACNFGQDICIPEIEPMGNSDKIVIENG-- 830
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
HP + VPND +G LL+TGPNMGGKSTL+R +
Sbjct: 831 -------RHPCITNIDNF--VPNDTKMGVAD---FANILLITGPNMGGKSTLMRQIAIIC 878
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+A +G +VP C LSL D IFTRLGA D I+ G+STFLVE +E A +L AT SLV+
Sbjct: 879 IMAHMGGYVPASGCTLSLIDRIFTRLGAHDDIVQGQSTFLVELSEAAVMLHHATPHSLVL 938
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST DG AIA A +L INCR LF+THYH L F + V L HMAC
Sbjct: 939 LDELGRGTSTHDGNAIATAYVEKLTT-INCRTLFSTHYHSLVDHFEARRDVQLGHMACMV 997
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+++ + ++ + FLY++ G CP+SYG VA ++G+ +V
Sbjct: 998 ENDDD---PTEESVTFLYKMARGRCPKSYGFNVARLSGLKHCIV 1038
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 147/444 (33%), Positives = 216/444 (48%), Gaps = 58/444 (13%)
Query: 232 SKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFF 291
++ ++L P KIRD N+RRPDDP YD RTLYIP L+K + + +Q+W +KS +MD +LFF
Sbjct: 135 NRLDFLQPDKIRDVNKRRPDDPDYDPRTLYIPQSFLEKQTPAMRQWWVLKSTHMDSVLFF 194
Query: 292 KVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIE 351
KVGKFYELY +DA +G +L + G+ G ES L+ +G+KV R E
Sbjct: 195 KVGKFYELYHMDAVVGVTQLGFSYM---KGEFAHSGFPESAYHKMANALIEKGFKVARTE 251
Query: 352 QLETSE--------QAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH-----LLAIKE 398
Q ET E Q +A + V++R++ + T +T V PDA+H + AI E
Sbjct: 252 QTETPEMMAERCKKQGRATKFDKVVNREICQISTKATCVYTAQLPDAMHSQSCYMYAIAE 311
Query: 399 GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+ +G F+D + + +DD C+ L L + P ++ E + L +
Sbjct: 312 KDVT--GSQRRFGICFIDTSIGVFKLAEFDDDKHCSKLLVCLSEYPPGLILTERKKLSSK 369
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNG-YFNGSSSP--WSKALENV 514
+ L L P + F AS ++KL LNG YF S+ + L+NV
Sbjct: 370 LKLILNTNYRDVRRESLAPE---SQFYGASTTIEKL--LNGNYFRNESNDLCLPEVLKNV 424
Query: 515 M-------QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPY---------KVYRDCLRM 557
+ ++ ALGG + +L LD V+ G Y K R C+ +
Sbjct: 425 TDGYNAKPEFELMVKALGGCLWYLHDSKLDIQVVSLGKFEIYQPLEMNVREKSPRSCMIL 484
Query: 558 DGQTLY--------------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
D T+ LD C T+ GKRLL WIC PL VE I R + V+ L+KN
Sbjct: 485 DSVTIVNLNLLGEENSLQKTLDYCQTAFGKRLLTQWICRPLCVVEKIKERQEAVQELVKN 544
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+ ++ L+KLPDLER L ++
Sbjct: 545 TSLLKDAQDVLKKLPDLERQLAKI 568
>gi|170054869|ref|XP_001863325.1| DNA mismatch repair protein MSH6 [Culex quinquefasciatus]
gi|167875012|gb|EDS38395.1| DNA mismatch repair protein MSH6 [Culex quinquefasciatus]
Length = 1130
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 170/289 (58%), Gaps = 20/289 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F W + + +DVL + A SSG+ P IL + G
Sbjct: 819 IFEKFSSAYDMWKTCVDLVGTLDVLTALA-EFGRSSGSTCFPEILDTD-------EEKGQ 870
Query: 790 VLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ ++ HP + EN +PN + LG+D R +LLTGPNMGGKSTL+R +
Sbjct: 871 IFELSEGIHPCVSDPENY---IPNGVSLGQDGT----RLILLTGPNMGGKSTLMRQVGVL 923
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+G +P E C L+L D IFTRLGA D IM G STFLVE ET+++L+ AT+ SLV
Sbjct: 924 AIMAQIGAPIPAESCRLTLIDRIFTRLGANDDIMAGHSTFLVELNETSTILKHATEKSLV 983
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDELGRGT+T+DG +IA AV + L E + CR +F+THYH L F + L HMAC
Sbjct: 984 LLDELGRGTATYDGTSIAGAVVQFLAE-LKCRSMFSTHYHNLVDNFERDERILLGHMACM 1042
Query: 969 F-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
K + E+ ++ + + FLY+ G+CP+SYG A +AG+P ++++ A
Sbjct: 1043 VEKEDDEDPTQ--ETVTFLYKYAPGSCPKSYGFNAAKLAGMPPQIIKRA 1089
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 161/562 (28%), Positives = 257/562 (45%), Gaps = 92/562 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K ++L P KI+D + + YD RTL++P L ++ + +Q+W +KS++ D +LFFK
Sbjct: 167 KLDFLKPDKIKDIQGNKANSEKYDPRTLFVPESYLATLTPAMRQWWELKSRHYDCVLFFK 226
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA +G KEL + G+ G E + LV RGYKV R+EQ
Sbjct: 227 VGKFYELYHMDASVGVKELGFSYM---KGEFAHSGFPEQAYERMATSLVERGYKVARVEQ 283
Query: 353 LET----SEQAKARHTNS----VISRKLVNVVTPSTTVDG-----TIGPDAVHLLAIKEG 399
ET SE+ K TNS V+ R++ V T V G T D ++LAI E
Sbjct: 284 TETPDMMSERCKKNKTNSKYDKVVKREICQVSLKGTEVYGQQVQMTQSADPNYMLAIAER 343
Query: 400 NCGP-DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+ G +G V YG F+D + +G +DD + L LL +P V++E R L
Sbjct: 344 SAGKGKSGGVRYGVCFIDTSLGIFHLGEFDDDGQASRLLTLLSHYAPALVLHE-RSLVSP 402
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS---SSPWSKALENVM 515
+ F A + P + F A + K + N Y + S S+ W +A+ ++
Sbjct: 403 GIHQI--FKTVLAGVRKEPLTNESQFWSAEKTLKYLAENHYGSSSDEKSAKWPEAVRCLL 460
Query: 516 QH------------DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY--------RDCL 555
++ ALGG I +L R +LD + + +++Y R L
Sbjct: 461 DKNDHLGLTPNEDSELSLKALGGCIWYLKRCLLDQQIVA--LAKFELYIPPDDNVTRKQL 518
Query: 556 R---------MDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
+ +D TL LD C T GKRLL W+C P + E I
Sbjct: 519 KISNSNRFMVLDAITLSNLRLTDGELSLLNRLDHCCTKFGKRLLHHWVCSPSCEREIIIQ 578
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVL----- 647
R D ++ L+++ ++ V Q L +LPDLER+L ++ + A P G+ +L
Sbjct: 579 RQDAIKELVEDINLLQDVRQILGELPDLERMLAQIHSFGNAERMKNHP-DGRAILYEEQT 637
Query: 648 --KQQVKVFGSLVKGLR-----------IAMDLLMLMHK---EGHIIPSL-SRI-FKPPI 689
K++++ F ++G + + DLL+ + + +G + P + S+I F
Sbjct: 638 YSKKKIQDFICTLRGFKALTRLPELFAGVKSDLLIRLTQLTLKGGVFPDMASKISFFEES 697
Query: 690 FDGSDGLDKFLTQFEAAIDSDF 711
FD L + E +D+++
Sbjct: 698 FDHEAALKTGVIAPEKGLDTEY 719
>gi|428185652|gb|EKX54504.1| Msh6 mismatch repair muts-like protein, meiosis and mitosis
[Guillardia theta CCMP2712]
Length = 1322
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 141/224 (62%), Gaps = 24/224 (10%)
Query: 810 VPNDILLGEDS-DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ--------------- 853
VPND++LG + D R ++TGPNMGGKSTLLR TC+AVI+AQ
Sbjct: 1054 VPNDVVLGAVACSDGFQRACVVTGPNMGGKSTLLRQTCIAVIMAQVLPPLALPPPPDRRA 1113
Query: 854 -LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
+G +VP C + D IFTR+GA+DRIM G+STF+VE +ET+ +LQ AT SLVILDE
Sbjct: 1114 KMGAYVPAACCRMRPVDRIFTRIGASDRIMAGQSTFMVELSETSIILQNATSRSLVILDE 1173
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTSTFDGYAIAY+V LV++ LLF+THY +T EF + V+L HM C
Sbjct: 1174 LGRGTSTFDGYAIAYSVLCHLVKQNRPLLLFSTHYKSITDEFRASKDVSLCHMDCLV--- 1230
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+G Q + FLY+ G +SYGL A AG+PQ V+ A
Sbjct: 1231 ----DEGSQTVTFLYKFKRGVASDSYGLHCAKAAGLPQAVIARA 1270
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 218/447 (48%), Gaps = 58/447 (12%)
Query: 227 EADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMD 286
EA +++WL+ ++D++ +RP + YD RTLYIP A + ++Q+W++K + D
Sbjct: 347 EAINQERYKWLE--DVKDSSGKRPGEDGYDPRTLYIPSSAYSSFTQFERQFWDIKRENFD 404
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
V+LFFK GKFYE++E DA+IGHK L K+T K R GI E +LVARG+K
Sbjct: 405 VVLFFKKGKFYEMFEGDADIGHKHLHLKLT--DRVKMRMCGIPEGQFSTYATRLVARGFK 462
Query: 347 VGRIEQLETSEQAKARHTNS-------VISRKLVNVVTPSTTVDGTI--GPDAVHLLAIK 397
VGR+EQ+ET + R ++ V R+L ++T T VD ++ P A ++L +
Sbjct: 463 VGRVEQMETLNAMQKRAKSNGVKQGSLVCERELCQILTQGTLVDESMLSSPQANYMLTVS 522
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
+ S G ++ + ++G + DD +L++ PKEV+Y L K
Sbjct: 523 VES----QSSTHMGICLLEASTGYFYLGEVEDDEMRTQFETVLLKAKPKEVVYPKGCLNK 578
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF----------NGSSSPW 507
+R+ L P F D ++ YF +G+SS
Sbjct: 579 ICLNMIRRHLDNPILNALQPG---EQFWDHQRTVTELENGSYFSSPTEDVDSSHGNSSKG 635
Query: 508 SKALENVM---QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVY----RDCLRMDG 559
N M + + SALGG + +L L LD +++ + P + + + L +DG
Sbjct: 636 LPEQLNQMVSERKESALSALGGAVCYLRSLKLDMELVSMKNFRPLQEFDGSSKSSLIIDG 695
Query: 560 QTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
QTL +LD C T+ GKR R+W+C PL+DV IN RLD E+
Sbjct: 696 QTLCNLEVIENCSGGTEGTLLKFLDRCSTAFGKRKFRNWVCSPLQDVSAINLRLDAAEFF 755
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+S V + L+KLPD+ER L RV
Sbjct: 756 -SSSSVRKEIQAKLKKLPDVERHLSRV 781
>gi|374110031|gb|AEY98936.1| FAGR116Wp [Ashbya gossypii FDAG1]
Length = 1167
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 146/449 (32%), Positives = 212/449 (47%), Gaps = 53/449 (11%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
KN EE +++WL RDA R P DP YD RTL+IP +A + + +KQYW +K
Sbjct: 200 KNNEE------RYQWLVDE--RDAAGRSPSDPEYDPRTLHIPAQAWARFTPFEKQYWQIK 251
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
S+ D ++FFK GKF+ELYE DA + ++ D KI G + GI E D + +
Sbjct: 252 SKMWDCIVFFKKGKFFELYEKDAHLANQLFDLKIAGGGRANMQLAGIPEMSFDYWASQFI 311
Query: 342 ARGYKVGRIEQLETSEQAKARHTN-SVISRKLVNVVTPSTTVD------------GTIGP 388
GYKV +++Q E+ + R N ++ R+L V++ T D +I
Sbjct: 312 QHGYKVAKVDQKESMLAKEMREGNKGIVERELQCVLSGGTLTDLKMLHSDQSTYCLSIHE 371
Query: 389 DAVHLLAIKEGNCGPDNGSV---VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+ L A++ G P ++G AF+D A R+ + DD+ C L L+ QV P
Sbjct: 372 APLALYAMERGEAVPPEAQQQGRLFGTAFIDTATGRICLLEFEDDSECTQLDTLMAQVRP 431
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
KEV+ E R L A K ++ S + +F D + V GYF G S
Sbjct: 432 KEVVMEKRNLSVIAHKIVKFNSQPDCIFNYRTS---AEFYDYARTFDEVSNGGYFAGMDS 488
Query: 506 PWSKALENVMQH--DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQ 560
W L+ +GFSA GGL+S+L L LD +L G + Y + L +DG
Sbjct: 489 -WPAILKQYYDQGKKVGFSAFGGLLSYLQWLKLDKSLLSMGMVEEYNPLKAQTSLVLDGI 547
Query: 561 TL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
TL ++ +T GKR +R+W+ HPL E I RLD V+ L
Sbjct: 548 TLQNLEIFANSFDGTDKGTLFKLVNRAITPMGKRQMRTWVMHPLLRKEHIEERLDSVDQL 607
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ + ++ L LPDLERLL RV +
Sbjct: 608 LNEMPIRDLLESSLTGLPDLERLLARVHS 636
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 157/285 (55%), Gaps = 15/285 (5%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
++ W I AIS ID + S A T+ RP + + NG L K L
Sbjct: 820 STTWFPTIKAISNIDCILSLARTSESLGFPACRPNFKDEIDPTTGHKLNG--YLSFKELR 877
Query: 798 HP-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
HP + G NG +PND+ LG+ + + LLTG N GKST+LR TC+AVI+AQLG
Sbjct: 878 HPCYNAGVNGATEFIPNDVHLGKST----AQIALLTGANAAGKSTILRMTCIAVIMAQLG 933
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
C+VPCE LS D I TRLGA D IM G+STF VE +ET +L AT +L++LDELGR
Sbjct: 934 CYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELSETRKILDMATNRTLIVLDELGR 993
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
G S+ DG+AIA V + + FATHY L + F HP V MA
Sbjct: 994 GGSSSDGFAIAEGVLHHISTHVQSLGFFATHYGTLGQSFTHHPMVKPLQMAILV------ 1047
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+G +++ FLY+L G S+G+ VA M G+P+ VVE A AA
Sbjct: 1048 -DEGSKKVTFLYKLIEGQSEGSFGMHVAAMCGIPRSVVENAERAA 1091
>gi|344229566|gb|EGV61451.1| DNA mismatch repair protein Msh6 [Candida tenuis ATCC 10573]
Length = 1167
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 143/431 (33%), Positives = 217/431 (50%), Gaps = 43/431 (9%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL IRDA +R +DP YD R+LYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 242 RYQWL--VNIRDAEKRSSEDPNYDPRSLYIPQAAWSKFTPFEKQYWEIKSKMWDTVVFFK 299
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I + + D K+ G + GI E D ++ ++ GYKV R++Q
Sbjct: 300 KGKFYELYENDAVIANSKFDLKLAGGGRANMKLAGIPEMSFDYWAKEFISNGYKVARVDQ 359
Query: 353 LETSEQAKARHTNS----VISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
E+ + R S VI R+L V+T T D + D A + L+IKE ++
Sbjct: 360 KESLLAKEMRGGGSKEEKVIKRELTAVLTGGTLTDLNMITDDMATYCLSIKEEKV--NDN 417
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
+G FVD A + I DD C L L+ QV PKEVI E L A K L+
Sbjct: 418 DYKFGVVFVDTATSELNFIEIEDDKYCNKLETLITQVRPKEVICEKHNLSSLASKVLKYN 477
Query: 467 SAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYFNGSSSPWSKALENVMQ----HDIGF 521
++ L ++T+F D ++KLV+ Y +S E +++ H + F
Sbjct: 478 NSNQIWNALD---SLTEFWDYDLTLEKLVKSQYYPGEDLDDFSNFPELLVEFKDNHQLAF 534
Query: 522 SALGGLISHLSRLMLDD-VLRNGDILPYKVYRDC---LRMDGQTL--------------- 562
+A GGL+ +L L LD+ ++ + Y + + L +DG TL
Sbjct: 535 NAFGGLLFYLKTLKLDESIMTLKNFKKYDINKSSSSHLILDGITLNNLEILNNSHDGSDK 594
Query: 563 -----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN-SEVVMVVAQYLRK 616
++ +T GKR+L++W+ +PL + E IN R +E+LM + ++ + L
Sbjct: 595 GTLFKMINKAITPFGKRMLKTWVLNPLLNAEDINERFKSIEFLMGDGADFRQTLESGLTG 654
Query: 617 LPDLERLLGRV 627
LPDLERLL R+
Sbjct: 655 LPDLERLLARI 665
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 156/293 (53%), Gaps = 23/293 (7%)
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
S + + F + W + I ++S +D L S + + + P K V NG
Sbjct: 840 SNMFKKFDTHYNTWCKAIGSLSKLDCLISLTRASEL--------IGYPSCKPNFVNSSNG 891
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
+ K L +P G +PND+ LG + P+ LLTG N GKST++R T L
Sbjct: 892 --FIDFKELRNPVYQGTKEF--IPNDVRLGGEE----PKFCLLTGANAAGKSTIMRTTAL 943
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVIL+Q+GCF+P L+ D I TRLGA D I+ G+STF VE +ET +L AT SL
Sbjct: 944 AVILSQIGCFLPALEATLTPVDKIMTRLGANDNILQGKSTFFVELSETKKILNNATPKSL 1003
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDELGRG S+ DGYAIA AV QL IN FATH+ L F +HP + M
Sbjct: 1004 VILDELGRGGSSADGYAIAEAVLYQLCTHINTLGFFATHFGSLGLSFENHPQIKPMRMGI 1063
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ +S N + FLY+L GA S+G+ VA M G+ ++VE A AA
Sbjct: 1064 IAEQDSRN-------ITFLYKLEHGAASGSFGMNVASMCGIANEIVENAEMAA 1109
>gi|340506212|gb|EGR32403.1| hypothetical protein IMG5_084640 [Ichthyophthirius multifiliis]
Length = 1002
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 164/283 (57%), Gaps = 25/283 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + + ++++++S +D L S A A LP P+ + N +
Sbjct: 700 FFSQRDFFYKILNSLSDLDALFSLAFNAQK----------LPVKCLPSFHKKN---TFIL 746
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ + HP + VPND + ++ +L+TGPNMGGKSTLLR TCLAVILAQ
Sbjct: 747 QNMHHPQLIKYKSKSIVPNDTIFPKNV-----TAILITGPNMGGKSTLLRQTCLAVILAQ 801
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G FVP E +S+ D IF R+GATD +M G+STF +E ET +++ +AT+DSLV+LDEL
Sbjct: 802 IGAFVPAEKFEMSIKDRIFCRIGATDNLMEGKSTFQIEMEETRNIVNEATEDSLVLLDEL 861
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG IAYAV + LVE+ C LF+THYH L EF + + M +F +
Sbjct: 862 GRGTSTYDGVCIAYAVLKYLVEKTKCLCLFSTHYHLLVDEFLLYDSIQSYFMNFSFDNQQ 921
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
Q++ F Y+ G +S+ + VA +AG+P ++VE A
Sbjct: 922 -------QKIHFEYKFVRGFSAKSFAVNVAQIAGLPYQIVERA 957
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 14/248 (5%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
+L I+D R P DP YD TL+IP + L +QYW VKS+ D L+FF++G+
Sbjct: 61 FLQKEYIKDKEGRSPSDPNYDSSTLHIPVKILSNERPLYQQYWQVKSENYDKLVFFRLGR 120
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISES--GIDDAVEKLVARGYKVGRIEQL 353
+ Y DA + + D ++ + G + S+ I + +EK V ++ +
Sbjct: 121 NFMCYYEDAFLMKRMFDLQVKMWGNKPFVMIWDSQYPLYIKETLEKANKTCIVVDQVSKK 180
Query: 354 ETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFA 413
+ K + ++++ T + ++ + ++ + E G A
Sbjct: 181 TIQKYIKIKINKKREITQIISKGTYTDFMNTNEDYNERFMMVLVESQIDSS-----LGIA 235
Query: 414 FVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI-------YENRGLCKEAQKALRKF 466
+DC +V + I D + L +L + P EV + + LCK K F
Sbjct: 236 LIDCTTHKVLLDDIKGDKNGNYLRTILRKYKPVEVYSKKNNLSLQTKNLCKIISKPQFNF 295
Query: 467 SAGSAALE 474
+ + E
Sbjct: 296 EYENKSFE 303
Score = 47.0 bits (110), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 483 DFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLR 541
DF+D S ++ + Y + + K ENV Q F L L+LD +
Sbjct: 360 DFMDQSFDYYMLLQSVYLLLNYLKFLKLNENVFQQS-TFEFLDEKTQSNDYLVLDSHAIE 418
Query: 542 NGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
N DI ++ +G L +LD T GKR L+ W+ +PLK+++ I R V+ +
Sbjct: 419 NLDIFEVNQITK-IQEEGSLLDFLDYTKTKFGKRKLKKWLMYPLKNIKQIQERQTTVQEI 477
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
++N + ++ L DLER L +V Q S
Sbjct: 478 LENINYFEDFLKKIQLLGDLERNLSKVFNSSQFS 511
>gi|425779081|gb|EKV17171.1| DNA mismatch repair protein Msh6, putative [Penicillium digitatum
PHI26]
Length = 1222
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 221/449 (49%), Gaps = 48/449 (10%)
Query: 219 AGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYW 278
+ +K + ++ WL + ++D + P YD RT+YIPP A K S +KQYW
Sbjct: 277 SAIKEKAHTKEPEQRYPWL--ANLKDIDGNPKGHPDYDPRTVYIPPLAWSKFSPFEKQYW 334
Query: 279 NVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVE 338
+K ++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E +D
Sbjct: 335 EIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWAN 392
Query: 339 KLVARGYKVGRIEQLETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD- 389
+ VA+G+K+ R++Q E++ E K + +I R+L V+T T V+G++ D
Sbjct: 393 QFVAKGFKIARVDQSESALGKEMREREGKKPTKEDKIIKRELACVLTAGTLVEGSMLQDD 452
Query: 390 -AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ + +AIKE + +G AFVD A + ++ DD + Q P+E+
Sbjct: 453 MSTYCVAIKEAIVDEHHA---FGIAFVDTATGQFFLSEFVDDVDMTKFETFVAQTRPREL 509
Query: 449 IYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGS 503
+ E + ++A + L+ + + + P +F ++ + ++ + YF + +
Sbjct: 510 LLEKSCVSQKAMRILKNNTGPTTIWNFMKPG---KEFWESEITIRELEASEYFVSADDDN 566
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQ 560
+ W + L + + SA G L+ +L L ++ D++ G+ Y + L +DGQ
Sbjct: 567 LTAWPETLRQAREKEFLMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQ 626
Query: 561 TL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
TL L+ C+T GKR+ + W+CHPL D + IN RLD V+ L
Sbjct: 627 TLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDSKKINARLDAVDSL 686
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ + L K+PDLERL+ R+ A
Sbjct: 687 NADPSARDQFSSRLTKMPDLERLISRIHA 715
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 175/337 (51%), Gaps = 27/337 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + +S +D L S A +SGA+ P P V ++ VL+
Sbjct: 895 FDEHYDTWLAAVRIVSQLDCLISLA----KASGAIGHPSCRP------VFVEDERSVLEF 944
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PNDI LG + LLTG N GKST+LR TC+AVI+AQ
Sbjct: 945 EKLRHPCLLSSVEDF-IPNDIQLGGNH----ASIDLLTGANAAGKSTVLRMTCVAVIMAQ 999
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 1000 IGCYLPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1059
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF +HP + + MA
Sbjct: 1060 GRGTSSYDGVAVAQAVLHHIATHIGALGFFATHYHSLAAEFENHPEIAPKRMAI------ 1113
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS--IGESF 1031
+ ++ + FLY+L +G S+G+ A M G+P KV+E A +AA + + + ES
Sbjct: 1114 -HVDDVERRVTFLYKLENGVAEGSFGMHCASMCGIPSKVIECAENAAKQWEHTSRLKESL 1172
Query: 1032 KSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYD 1068
E R + W + R DD +A D
Sbjct: 1173 ---EHRKGGGYVGLGWWSDVAWALRESVTEDDSNAGD 1206
>gi|253577912|ref|ZP_04855184.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850230|gb|EES78188.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 874
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 171/528 (32%), Positives = 254/528 (48%), Gaps = 97/528 (18%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G R LRS++ PL D + I RL+ +E L KN + + +YL + DLERL
Sbjct: 293 LDKTKTAMGARTLRSYVEQPLIDRDEIEQRLEALEELNKNGMLRDEIREYLGPVYDLERL 352
Query: 624 LGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVFGS-LVKGLRIAMDLLM----- 669
+ R+ + ASS +LP I KQ +K F + L++ + MD L
Sbjct: 353 ISRISYKSANPRDLIAFASSLEMLPYI-----KQVLKEFKTPLLQKIYEDMDSLEDVTDL 407
Query: 670 ----------LMHKEGHIIPSLSR----IFKPPIFDGSDGLDKFLTQFEAA--------- 706
L K+G II F+ DG K+L++ EA
Sbjct: 408 IKRAIVEDPPLAQKDGGIIKEGYNEDVDKFRRSRTDGK----KWLSELEAKERERTGIKT 463
Query: 707 --------------IDSDFPD-----------------YQNHDVTDLDAETLSILIELFI 735
I + F D Y ++ +L+ L +L+
Sbjct: 464 MKIKYNRVFGYSLEITNTFKDLVPDNYIRKQTLTNAERYITQELKELEDLILGAEDKLYA 523
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR-QDNGGPVLKIK 794
+ + +V A+ +V+R ++++ + L L +N VR + N V+ IK
Sbjct: 524 LEYELFCDVRDAVGK-EVMRIQKTAKAVAALDVFASLALVAERNHFVRPKTNTTGVIDIK 582
Query: 795 GLWHPFALGENGGLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
HP + ND+ + D+ D+ R ++TGPNM GKST +R T L V++A
Sbjct: 583 NGRHPVV-----EQMIENDMFIANDTYLDNHKKRVSIITGPNMAGKSTYMRQTALIVLMA 637
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+G FVP E + + D IFTR+GA+D + +G+STF+VE TE A++L+ AT SL+ILDE
Sbjct: 638 QIGSFVPAEKANIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATARSLLILDE 697
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINC--RLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
+GRGTSTFDG AIA+AV + C + LFATHYH LT+ P V +A
Sbjct: 698 IGRGTSTFDGLAIAWAVIEHISNTKLCGAKTLFATHYHELTELEGKIPGVNNYCIAVK-- 755
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
KGD ++VFL ++ G +SYG+QVA +AGVP V++ A
Sbjct: 756 ------EKGD-DIVFLRKIVQGGADKSYGIQVAKLAGVPDSVIQRAKE 796
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
MS ++Y K QY D +LF+++G FYE++ DA + +EL+ +T G +
Sbjct: 1 MSPMMQEYCKTKEQYKDCILFYRLGDFYEMFFDDALLVTRELEITLTGKDCGLEERAPMC 60
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ + + +L+ RG+KV EQ+E ++AK ++ R++V +VTP TT+D
Sbjct: 61 GVPYHAAETYINRLIERGHKVAICEQVEDPKKAKG-----LVKREVVRIVTPGTTLDA 113
>gi|302309404|ref|NP_986782.2| AGR116Wp [Ashbya gossypii ATCC 10895]
gi|299788343|gb|AAS54606.2| AGR116Wp [Ashbya gossypii ATCC 10895]
Length = 1167
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 146/449 (32%), Positives = 212/449 (47%), Gaps = 53/449 (11%)
Query: 222 KNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVK 281
KN EE +++WL RDA R P DP YD RTL+IP +A + + +KQYW +K
Sbjct: 200 KNNEE------RYQWLVDE--RDAAGRPPSDPEYDPRTLHIPAQAWARFTPFEKQYWQIK 251
Query: 282 SQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLV 341
S+ D ++FFK GKF+ELYE DA + ++ D KI G + GI E D + +
Sbjct: 252 SKMWDCIVFFKKGKFFELYEKDAHLANQLFDLKIAGGGRANMQLAGIPEMSFDYWASQFI 311
Query: 342 ARGYKVGRIEQLETSEQAKARHTN-SVISRKLVNVVTPSTTVD------------GTIGP 388
GYKV +++Q E+ + R N ++ R+L V++ T D +I
Sbjct: 312 QHGYKVAKVDQKESMLAKEMREGNKGIVERELQCVLSGGTLTDLKMLHSDQSTYCLSIHE 371
Query: 389 DAVHLLAIKEGNCGPDNGSV---VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+ L A++ G P ++G AF+D A R+ + DD+ C L L+ QV P
Sbjct: 372 APLALYAMERGEAVPPEAQQQGRLFGTAFIDTATGRICLLEFEDDSECTQLDTLMAQVRP 431
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
KEV+ E R L A K ++ S + +F D + V GYF G S
Sbjct: 432 KEVVMEKRNLSVIAHKIVKFNSQPDCIFNYRTS---AEFYDYARTFDEVSNGGYFAGMDS 488
Query: 506 PWSKALENVMQH--DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQ 560
W L+ +GFSA GGL+S+L L LD +L G + Y + L +DG
Sbjct: 489 -WPAILKQYYDQGKKVGFSAFGGLLSYLQWLKLDKSLLSMGMVEEYNPLKAQTSLVLDGI 547
Query: 561 TL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
TL ++ +T GKR +R+W+ HPL E I RLD V+ L
Sbjct: 548 TLQNLEIFANSFDGTDKGTLFKLVNRAITPMGKRQMRTWVMHPLLRKEHIEERLDSVDQL 607
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ + ++ L LPDLERLL RV +
Sbjct: 608 LNEMPIRDLLESSLTGLPDLERLLARVHS 636
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/285 (42%), Positives = 157/285 (55%), Gaps = 15/285 (5%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
++ W I AIS ID + S A T+ RP + + NG L K L
Sbjct: 820 STTWFPTIKAISNIDCILSLARTSESLGFPACRPNFKDEIDPTTGHKLNG--YLSFKELR 877
Query: 798 HP-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
HP + G NG +PND+ LG+ + + LLTG N GKST+LR TC+AVI+AQLG
Sbjct: 878 HPCYNAGVNGATEFIPNDVHLGKST----AQIALLTGANAAGKSTILRMTCIAVIMAQLG 933
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
C+VPCE LS D I TRLGA D IM G+STF VE +ET +L AT +L++LDELGR
Sbjct: 934 CYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELSETRKILDMATNRTLIVLDELGR 993
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
G S+ DG+AIA V + + FATHY L + F HP V MA
Sbjct: 994 GGSSSDGFAIAEGVLHHISTHVQSLGFFATHYGTLGQSFTHHPMVKPLQMAILV------ 1047
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+G +++ FLY+L G S+G+ VA M G+P+ VVE A AA
Sbjct: 1048 -DEGSKKVTFLYKLIEGQSEGSFGMHVAAMCGIPRSVVENAERAA 1091
>gi|1588283|prf||2208298A MSH6 gene
Length = 1242
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 213/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 276 RYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GK +ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 334 KGKEFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 393
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN----CGP 403
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 394 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNFYNETQL 453
Query: 404 DNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
D+ ++V +G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 454 DSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 513
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ A +F D + + YF+ + W + L++
Sbjct: 514 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISEEYFS-TEEDWPEVLKSYYD 570
Query: 517 --HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--------- 562
+GFSA GGL+ +L L LD +++ +I Y + + +DG TL
Sbjct: 571 TGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIFSNS 630
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 631 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLE 690
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L R+ +R
Sbjct: 691 ITFSKLPDLERMLARIHSRT 710
>gi|392300210|gb|EIW11301.1| Msh6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1242
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 214/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 276 RYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 334 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 393
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN----CGP 403
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 394 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNFYNETQL 453
Query: 404 DNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
D+ ++V +G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 454 DSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 513
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ A +F D + + + YF+ + W + L++
Sbjct: 514 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISSEYFS-TEEDWPEVLKSYYD 570
Query: 517 --HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--------- 562
+GFSA GGL+ +L L LD +++ +I Y + + +DG TL
Sbjct: 571 TGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIFSNS 630
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 631 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLE 690
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L + +R
Sbjct: 691 ITFSKLPDLERMLAGIHSRT 710
>gi|398365559|ref|NP_010382.3| mismatch repair ATPase MSH6 [Saccharomyces cerevisiae S288c]
gi|3024187|sp|Q03834.1|MSH6_YEAST RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS
protein homolog 6; AltName: Full=Postmeiotic segregation
protein 3
gi|633631|emb|CAA87671.1| probable DNA repair protein [Saccharomyces cerevisiae]
gi|285811118|tpg|DAA11942.1| TPA: mismatch repair ATPase MSH6 [Saccharomyces cerevisiae S288c]
Length = 1242
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 215/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 276 RYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 334 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 393
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN----CGP 403
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 394 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNFYNETQL 453
Query: 404 DNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
D+ ++V +G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 454 DSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 513
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ A +F D + + + YF+ + W + L++
Sbjct: 514 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISSEYFS-TEEDWPEVLKSYYD 570
Query: 517 --HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--------- 562
+GFSA GGL+ +L L LD +++ +I Y + + +DG TL
Sbjct: 571 TGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIFSNS 630
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 631 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLE 690
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L R+ +R
Sbjct: 691 ITFSKLPDLERMLARIHSRT 710
>gi|349577164|dbj|GAA22333.1| K7_Msh6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1242
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 214/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 276 RYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 334 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 393
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN----CGP 403
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 394 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNFYNETQL 453
Query: 404 DNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
D+ ++V +G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 454 DSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 513
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ A +F D + + + YF+ + W + L++
Sbjct: 514 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISSEYFS-TEEDWPEVLKSYYD 570
Query: 517 --HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--------- 562
+GFSA GGL+ +L L LD +++ +I Y + + +DG TL
Sbjct: 571 TGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIFSNS 630
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 631 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLE 690
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L + +R
Sbjct: 691 ITFSKLPDLERMLAGIHSRT 710
>gi|151942085|gb|EDN60441.1| MutS-like protein [Saccharomyces cerevisiae YJM789]
Length = 1242
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 215/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 276 RYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 334 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 393
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN----CGP 403
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 394 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNFYNETQL 453
Query: 404 DNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
D+ ++V +G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 454 DSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 513
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ A +F D + + + YF+ + W + L++
Sbjct: 514 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISSEYFS-TEEDWPEVLKSYYD 570
Query: 517 --HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--------- 562
+GFSA GGL+ +L L LD +++ +I Y + + +DG TL
Sbjct: 571 TGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIFSNS 630
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 631 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLE 690
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L R+ +R
Sbjct: 691 ITFSKLPDLERMLARIHSRT 710
>gi|365990916|ref|XP_003672287.1| hypothetical protein NDAI_0J01520 [Naumovozyma dairenensis CBS 421]
gi|343771062|emb|CCD27044.1| hypothetical protein NDAI_0J01520 [Naumovozyma dairenensis CBS 421]
Length = 1260
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 158/284 (55%), Gaps = 15/284 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W I +S ID L S T+ RP+ + + + NG LK K L H
Sbjct: 911 TSWMATIQVLSNIDCLLSLTRTSESLGMPFCRPIFKDEVDSTMGTKLNG--YLKFKSLRH 968
Query: 799 P-FALG-ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
P F LG N +PND+ LG+D P+ LLTG N GKST+LR TC+AVI+AQ+GC
Sbjct: 969 PCFNLGTSNDKDFIPNDVELGKDE----PQLGLLTGANAAGKSTVLRMTCVAVIMAQMGC 1024
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VPCE L+ D I TRLGA D IM G+STF VE +ET +L AT SL++LDELGRG
Sbjct: 1025 YVPCEYAELTPVDRIMTRLGANDNIMQGKSTFFVELSETKKILDLATNRSLLVLDELGRG 1084
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA +V + I FATHY L F HP V M+ ++ N
Sbjct: 1085 GSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLGLGFKGHPQVRPMKMSILVDDDTRN- 1143
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY+L G S+G+ VA M G+P+++V+ A AA
Sbjct: 1144 ------VTFLYKLVDGQSEGSFGMHVASMCGIPKEIVDNAQDAA 1181
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 204/442 (46%), Gaps = 50/442 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR P DP YD R+LYIP A K + +KQYW +KS D ++FFK
Sbjct: 290 RYQWLVDE--RDAQRRPPTDPEYDPRSLYIPSAAWNKFTPFEKQYWEIKSTMWDCIVFFK 347
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + DWKI G + GI E + + GYKV +++Q
Sbjct: 348 KGKFFELYEKDALLANSLFDWKIAGGGRANMQLAGIPEMSFGYWASQFIQLGYKVAKVDQ 407
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNCG------- 402
E+ + R + ++ R+L V+T T DG + A AI+E
Sbjct: 408 RESMLAKEMREGSKGIVKRELECVLTSGTLTDGDMLHSDLATFCFAIREEPKTFYKSNEV 467
Query: 403 ----PDNGSV------VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
DN ++ ++G AF+D A + + DD C L ++ QV PKE+I E
Sbjct: 468 RIEEEDNDTIQGLPKRLFGVAFIDTATGELQMLEFEDDDECTKLDTIMSQVKPKEIIMEK 527
Query: 453 RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALE 512
L A K + KF+A A+ T+F D + YF S W L
Sbjct: 528 NNLSSLANKIV-KFNAAPHAI-FNNIKPTTEFYDFERTYDELNAGNYFEDESK-WPSILR 584
Query: 513 NVMQ--HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVY--RDCLRMDGQTL----- 562
IGFSA GGL+ +L L LD ++L G+I Y + L +DG TL
Sbjct: 585 EYYDSGKKIGFSAFGGLLYYLKWLKLDQNLLTIGNIKEYNPIESQHSLILDGITLQNLEI 644
Query: 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
D +T GKR+++ W+ HPL I RLD V+ LM +S +
Sbjct: 645 FSNSFDGTDKGTLFKLFDRAITPMGKRMIKKWLMHPLLHRCDIEKRLDSVDSLMNDSSLR 704
Query: 608 MVVAQYLRKLPDLERLLGRVKA 629
+ K PDLER+L R+ +
Sbjct: 705 NFLESTFSKFPDLERMLARIHS 726
>gi|117556981|gb|ABK35676.1| putative mismatch repair protein [Tetrahymena thermophila]
Length = 1134
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 167/308 (54%), Gaps = 41/308 (13%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFA-VTASMSSGAMHRPLI------------LPQSKNP 780
F +K W + + ++ +D L S + +M+ G M RP+I L Q +NP
Sbjct: 824 FYKKKHVWDKFVSIVAELDCLISISHACFTMADGVMCRPVIKFAKNQKETFFYLKQGRNP 883
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSD-DCLPRTLLLTGPNMGGKS 839
+ Q L +K VPNDI+LG + + P ++LTGPNMGGKS
Sbjct: 884 NLIQ------LDLK--------------QVPNDIILGNIAGMNAQPNIMILTGPNMGGKS 923
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T LR CL+ ILAQ+GC+VP E C SL D IFTR+GA D+++ G+STF +E E + +
Sbjct: 924 TTLRLFCLSAILAQIGCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSI 983
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
T +S+ I DELGRGTSTFDG AIA+ + + +E+I R +FATH+ L E +
Sbjct: 984 MYGTYNSIAIFDELGRGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLINELRFYKE 1043
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019
++ HM + + S ++L+F Y+L G S+G+ +A + G+ Q V+ A
Sbjct: 1044 ISFYHMEYYYDNKS-------KKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQKK 1096
Query: 1020 ALAMKKSI 1027
L + S+
Sbjct: 1097 QLEFENSL 1104
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 71/449 (15%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRP-DDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQ 283
EE+ + KF + R +R+ P +P YD TLYIPP+ K++++ KQYW +K++
Sbjct: 182 EEQLNQIPKFA---QQRYRKDSRQIPFGNPQYDPTTLYIPPQEFSKLTSAMKQYWQIKAK 238
Query: 284 YMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVAR 343
+ D ++ FK+GKFYEL+ DA I + LD T K G E ++ KLV
Sbjct: 239 HFDKIILFKMGKFYELFYEDAIIATRLLDITFT----NKELHCGFPEKALEKFASKLVQF 294
Query: 344 GYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKEGN 400
GYKV + EQ + T ++ R + ++T T++ T D +LL I++
Sbjct: 295 GYKVVVV------EQTSKKTTTGIVDRDITQIITKG-TINFTFEEQNHDPKYLLVIRQ-K 346
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ G +VY + ++ VG + DD + L + L P+E++Y+ + +
Sbjct: 347 TNQEFGIIVY-----ESFTSKIQVGLLQDDKTQTRLKSFLCVTKPQEIVYDPGNITSDIL 401
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD-- 518
K L+ S ++P D S + F + + L ++ +D
Sbjct: 402 KILKSQYFQSV---MSPMRDNKD--QWSTQLATFYIEKQFGSEVQKYPQELRDIRTNDEI 456
Query: 519 ------IGFSALGGLISHL-SRLMLDDVLRNGDILP----YKVYRDCLRMDGQTL----- 562
+ ++AL G S++ S L L+ +L + + + K + + +D Q L
Sbjct: 457 RGQVINLKYAALAGFFSYMDSTLQLESILNSSEYVECDFDNKQFSQRMILDSQALQHLEI 516
Query: 563 ------------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
YLD T GKR+L+ W+C PL D+ IN+R D +E
Sbjct: 517 FENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCSPLIDISAINDRYDAIE 576
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ N + + + D+ERL +
Sbjct: 577 DIQNNLAMKDKFQYGIARYADIERLCSSI 605
>gi|190346907|gb|EDK39095.2| hypothetical protein PGUG_03193 [Meyerozyma guilliermondii ATCC
6260]
Length = 1198
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 148/435 (34%), Positives = 222/435 (51%), Gaps = 48/435 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL +RDA +R DDP YD RTLYIP A K +A +KQYW +K D ++FFK
Sbjct: 270 RYQWL--VNVRDAEKRTMDDPNYDPRTLYIPQSAWSKFTAFEKQYWEIKGVMWDTVVFFK 327
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I + E D KI G + GI E + ++ ++ GYKV +++Q
Sbjct: 328 KGKFYELYENDATIANSEFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYKVAKVDQ 387
Query: 353 LETSEQAKAR----HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
E+ + R +I R+L V+T T D + D + + L+IK+ DN
Sbjct: 388 KESLLAKEMRGGGTKEEKIIKRELTGVLTGGTLTDLNMLSDDMSTYCLSIKQF----DNW 443
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
+G FVD A + DD C L L+ V PKEVI E L A K L K+
Sbjct: 444 ---FGVVFVDTATSELNFYQFEDDNECTKLETLVTHVRPKEVICEKHNLSSTATKIL-KY 499
Query: 467 SAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSS----SPWSKALENVM-QHDIG 520
+A + T+F D + ++KLV + Y++ + S + AL ++
Sbjct: 500 TAQPSNQIWNTLNPNTEFWDYDTTLEKLVS-SKYYDATDLDDFSNYPDALIAFKDKNQYA 558
Query: 521 FSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLR---MDGQTLYLDSCVTSS----- 571
FSA GGL+S+L L LD +++ G+I Y++ + +DG TL +T+S
Sbjct: 559 FSAFGGLLSYLKFLKLDHNIMTMGNIREYQITTRSAKNMILDGITLNNLEILTNSFDGSD 618
Query: 572 ---------------GKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLR 615
GKR+L++W+ +PL IN+RLD VEYLM + +E+ ++ + L
Sbjct: 619 KGTLFKLLNRAQSPFGKRMLKNWVLNPLMVSSDINDRLDSVEYLMGEGAEIKDILEKSLS 678
Query: 616 KLPDLERLLGRVKAR 630
LPDLERL+ R ++
Sbjct: 679 GLPDLERLIARTHSK 693
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 161/303 (53%), Gaps = 24/303 (7%)
Query: 725 ETLSI-LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
ETL + E F + W IH ++ ID + + + +S + +P PQ V
Sbjct: 861 ETLRFRMYERFCKHYKVWKSTIHVLANIDCI----IALTKTSETLGQPSCRPQ----FVE 912
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
D G ++ K L +P + G +PND+ LG D LLTG N GKSTL+R
Sbjct: 913 ADTG--LIDFKDLRNPCFV--TSGEFIPNDVSLGGDE----AHFGLLTGANAAGKSTLMR 964
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T +AV+++Q+GCFVP L+ D I TRLGA D I+ G+STF VE +ET +L AT
Sbjct: 965 TTAMAVVMSQIGCFVPASHARLTPVDKIMTRLGANDNILQGKSTFFVELSETKKILANAT 1024
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLVILDELGRG S+ DG+AIA AV L + FATHY L F HP +
Sbjct: 1025 AKSLVILDELGRGGSSSDGFAIAEAVLHHLATHVQPLGFFATHYGSLVLSFEGHPQIRPL 1084
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
MA NS N + FLY+L G P S+G+ VA M G+ ++V+ A AA+
Sbjct: 1085 RMAIVIDQNSRN-------ITFLYKLEDGTAPGSFGMNVAAMCGISSEIVDQAEVAAIKY 1137
Query: 1024 KKS 1026
+++
Sbjct: 1138 EQT 1140
>gi|256269843|gb|EEU05102.1| Msh6p [Saccharomyces cerevisiae JAY291]
Length = 1242
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WIPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 215/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 276 RYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 334 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 393
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN----CGP 403
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 394 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNFYNETQL 453
Query: 404 DNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
D+ ++V +G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 454 DSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 513
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ A +F D + + + YF+ + W + L++
Sbjct: 514 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISSEYFS-TEEDWPEVLKSYYD 570
Query: 517 --HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--------- 562
+GFSA GGL+ +L L LD +++ +I Y + + +DG TL
Sbjct: 571 TGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIFSNS 630
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 631 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLE 690
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L R+ +R
Sbjct: 691 ITFSKLPDLERMLARIHSRT 710
>gi|363751194|ref|XP_003645814.1| hypothetical protein Ecym_3519 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889448|gb|AET38997.1| Hypothetical protein Ecym_3519 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1233
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 163/543 (30%), Positives = 260/543 (47%), Gaps = 66/543 (12%)
Query: 169 EDVSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEA 228
E VS P TP + V +L+ N ++KN SL +SK ++ + + K+
Sbjct: 216 EFVSKPRTPA--KSVQSRAGVLKINR---EQKNRSLKSTSK----MEITASSDKHTNFNK 266
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVL 288
+ +++WL RDA +P D YD R+LY+PPEA K + +KQYW +KS+ D +
Sbjct: 267 NNEQRYQWL--VNERDAAGHQPSDSDYDPRSLYVPPEAWAKFTPFEKQYWQIKSKMWDCI 324
Query: 289 LFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVG 348
+FFK GKF+ELYE DA + ++ D KI G + GI E + + + GYKV
Sbjct: 325 VFFKKGKFFELYEKDAHLANQLFDLKIAGGGRANMQLAGIPEMSFEYWASQFIQNGYKVA 384
Query: 349 RIEQLETSEQAKARHTNS-VISRKLVNVVTPST-TVDGTIGPD-AVHLLAIKE------- 398
+++Q E+ + R N ++ R+L V+T T T G + D A + +AI+E
Sbjct: 385 KVDQKESMLAKEMREGNKGIVERELQCVLTSGTLTESGMLQTDLATYCMAIREEPIDYYN 444
Query: 399 ------GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+ ++ +G + +D A + + DD C+ L L+ QV PKEVI E
Sbjct: 445 LDCHNHSSTEKNSTGKYFGVSIIDTATGHIKMLEFEDDNECSQLDTLVAQVKPKEVIIER 504
Query: 453 RGLCKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
+ L A K + KF+ A+ TP +F D + + +GYF S W +
Sbjct: 505 KNLSTLAHKIV-KFNVQPDAIFNYRTPE----EFYDFNRTYDEIVTHGYFPNMES-WPQV 558
Query: 511 LENVMQ--HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--- 562
L+ +GF A GGL+S+L L LD ++ G I Y + L +DG TL
Sbjct: 559 LQEYYNKGKKVGFHAFGGLLSYLQWLKLDLSLVTMGQIEQYDHTKSQGFLCLDGITLQNL 618
Query: 563 -----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
L+ +T GKR +R+W+ HPL + + I+ RLD V+ L+ + +
Sbjct: 619 EIFANSFDGSDKGTLFKLLNHAITPMGKRAIRNWVMHPLLNKQHIDERLDSVDQLLSDMD 678
Query: 606 VVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVK------VFGSLVK 659
+ ++ LPDLERLL R+ + S + G + + + V+ + GSL+K
Sbjct: 679 IRGIIESAFIGLPDLERLLSRIHSNTLKISEFDKVITGFETVSKLVQDLNKYELKGSLLK 738
Query: 660 GLR 662
L+
Sbjct: 739 FLK 741
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 159/289 (55%), Gaps = 15/289 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I +IS ID + S + + RP+ + + NG L K L HP
Sbjct: 889 WLPTIRSISNIDCILSLSRASEGLGFPACRPVFHDSTDTKTGHKSNG--FLSFKQLRHPC 946
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F +G +PND+ LG D+ + LLTG N GKST+LR TC+AVI+AQLGC+V
Sbjct: 947 FNMGATAATDFIPNDVTLGRDT----AQLALLTGANAAGKSTVLRMTCVAVIMAQLGCYV 1002
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE+ L+ D I TR+GA D IM G+STF VE +ET +L AT SL++LDELGRG S
Sbjct: 1003 PCEVAELTPVDRIMTRIGANDNIMQGKSTFFVELSETKKILDMATNRSLLVLDELGRGGS 1062
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA VF + + FATHY L + F+ HP + M+ S N
Sbjct: 1063 SNDGFAIAEGVFHHIATHVQSLGFFATHYGTLGQSFSHHPMIKPLKMSILVDEASRN--- 1119
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ FLY+L G S+G+ VA M G+P+++V+ A A ++ ++
Sbjct: 1120 ----VTFLYKLIEGQSEGSFGMHVASMCGIPRQIVDRAEKTADTLEHTL 1164
>gi|255936397|ref|XP_002559225.1| Pc13g07990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583845|emb|CAP91868.1| Pc13g07990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1207
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 218/435 (50%), Gaps = 48/435 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL + ++D + P YD RT+YIPP A + S +KQYW +K ++ D ++FFK
Sbjct: 276 RYSWL--ANLKDIDGNPQGHPDYDPRTIYIPPLAWSRFSPFEKQYWEIKQKFWDTVVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH+ D K+T R VG+ E +D + VA+G+K+ R++Q
Sbjct: 334 KGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWANQFVAKGFKIARVDQ 391
Query: 353 LETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
E++ E K + +I R+L V+T T V+G++ D + + +AIKEG
Sbjct: 392 SESALGKEMREREGKKPTKDDKIIKRELACVLTAGTLVEGSMLQDDMSTYCVAIKEGIV- 450
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+ +G AFVD A + ++ DD + Q P+E++ E + ++A +
Sbjct: 451 --DERPAFGIAFVDTATGQFFMSEFVDDVDLTKFETFVAQTRPRELLLEKSCVSQKAMRI 508
Query: 463 LRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGSSSPWSKALENVMQH 517
L+ + + + P +F ++ + + + YF + + + W + L +
Sbjct: 509 LKNNTDPTTIWNFMKPG---REFWESDITLRELDASEYFVSVDDDNLAAWPETLRQAREK 565
Query: 518 DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQTL------------ 562
++ SA G L+ +L L ++ D++ G+ Y + L +DGQTL
Sbjct: 566 ELLMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQTLINMEIFANSFDG 625
Query: 563 --------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
L+ C+T GKR+ + W+CHPL D + IN RLD V+ L + + L
Sbjct: 626 GSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDSKKINARLDAVDSLNADPSTRDQFSSQL 685
Query: 615 RKLPDLERLLGRVKA 629
K+PDLERL+ R+ A
Sbjct: 686 TKMPDLERLISRIHA 700
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 157/287 (54%), Gaps = 22/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + +S +D L S A +S A+ P P V D+ VL+
Sbjct: 880 FDEHYSTWLAAVRIVSQLDCLISLA----KASAAIGHPSCRP------VFVDDERSVLEF 929
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PNDI LG LLTG N GKST+LR TC+AVI+AQ
Sbjct: 930 EELRHPCLLSSVEDF-IPNDIQLGGKH----ASIDLLTGANAAGKSTVLRMTCVAVIMAQ 984
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 985 IGCYLPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1044
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF +HP + + MA
Sbjct: 1045 GRGTSSYDGVAVAQAVLHHIATHIGALGFFATHYHSLAAEFENHPEIAPKRMAI------ 1098
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ ++ + FLY+L G S+G+ A M G+P KV+E A +AA
Sbjct: 1099 -HVDDVERRVAFLYKLEDGVAEGSFGMHCASMCGIPSKVIECAENAA 1144
>gi|146418998|ref|XP_001485464.1| hypothetical protein PGUG_03193 [Meyerozyma guilliermondii ATCC
6260]
Length = 1198
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 148/435 (34%), Positives = 222/435 (51%), Gaps = 48/435 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL +RDA +R DDP YD RTLYIP A K +A +KQYW +K D ++FFK
Sbjct: 270 RYQWL--VNVRDAEKRTMDDPNYDPRTLYIPQSAWSKFTAFEKQYWEIKGVMWDTVVFFK 327
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA I + E D KI G + GI E + ++ ++ GYKV +++Q
Sbjct: 328 KGKFYELYENDATIANSEFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYKVAKVDQ 387
Query: 353 LETSEQAKAR----HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
E+ + R +I R+L V+T T D + D + + L+IK+ DN
Sbjct: 388 KESLLAKEMRGGGTKEEKIIKRELTGVLTGGTLTDLNMLSDDMSTYCLSIKQF----DNW 443
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
+G FVD A + DD C L L+ V PKEVI E L A K L K+
Sbjct: 444 ---FGVVFVDTATSELNFYQFEDDNECTKLETLVTHVRPKEVICEKHNLSSTATKIL-KY 499
Query: 467 SAGSAALELTPAMAVTDFLDA-SEVKKLVQLNGYFNGSS----SPWSKALENVM-QHDIG 520
+A + T+F D + ++KLV + Y++ + S + AL ++
Sbjct: 500 TAQPSNQIWNTLNPNTEFWDYDTTLEKLVS-SKYYDATDLDDFSNYPDALIAFKDKNQYA 558
Query: 521 FSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLR---MDGQTLYLDSCVTSS----- 571
FSA GGL+S+L L LD +++ G+I Y++ + +DG TL +T+S
Sbjct: 559 FSAFGGLLSYLKFLKLDHNIMTMGNIREYQITTRLAKNMILDGITLNNLEILTNSFDGSD 618
Query: 572 ---------------GKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLR 615
GKR+L++W+ +PL IN+RLD VEYLM + +E+ ++ + L
Sbjct: 619 KGTLFKLLNRAQSPFGKRMLKNWVLNPLMVSSDINDRLDSVEYLMGEGAEIKDILEKSLL 678
Query: 616 KLPDLERLLGRVKAR 630
LPDLERL+ R ++
Sbjct: 679 GLPDLERLIARTHSK 693
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 161/303 (53%), Gaps = 24/303 (7%)
Query: 725 ETLSI-LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
ETL + E F + W IH ++ ID + + + +S + +P PQ V
Sbjct: 861 ETLRFRMYERFCKHYKVWKSTIHVLANIDCI----IALTKTSETLGQPSCRPQ----FVE 912
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
D G ++ K L +P + G +PND+ LG D LLTG N GKSTL+R
Sbjct: 913 ADTG--LIDFKDLRNPCFV--TSGEFIPNDVSLGGDE----AHFGLLTGANAAGKSTLMR 964
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T +AV+++Q+GCFVP L+ D I TRLGA D I+ G+STF VE +ET +L AT
Sbjct: 965 TTAMAVVMSQIGCFVPASHARLTPVDKIMTRLGANDNILQGKSTFFVELSETKKILANAT 1024
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLVILDELGRG S+ DG+AIA AV L + FATHY L F HP +
Sbjct: 1025 AKSLVILDELGRGGSSSDGFAIAEAVLHHLATHVQPLGFFATHYGSLVLSFEGHPQIRPL 1084
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
MA NS N + FLY+L G P S+G+ VA M G+ ++V+ A AA+
Sbjct: 1085 RMAIVIDQNSRN-------ITFLYKLEDGTAPGSFGMNVAAMCGISSEIVDQAEVAAIKY 1137
Query: 1024 KKS 1026
+++
Sbjct: 1138 EQT 1140
>gi|425765631|gb|EKV04301.1| DNA mismatch repair protein Msh6, putative [Penicillium digitatum
Pd1]
Length = 1222
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 220/449 (48%), Gaps = 48/449 (10%)
Query: 219 AGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYW 278
+ +K + ++ WL + ++D + P YD RT+YIPP A K S +KQYW
Sbjct: 277 SAIKEKAHTKEPEQRYPWL--ANLKDIDGNPKGHPDYDPRTVYIPPLAWSKFSPFEKQYW 334
Query: 279 NVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVE 338
+K ++ D ++FFK GKFYELYE DA IGH+ D K+T R VG+ E +D
Sbjct: 335 EIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLT--DRVNMRMVGVPEMSLDHWAN 392
Query: 339 KLVARGYKVGRIEQLETS--------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD- 389
+ VA+G+K+ R+ Q E++ E K + +I R+L V+T T V+G++ D
Sbjct: 393 QFVAKGFKIARVVQSESALGKEMREREGKKPTKEDKIIKRELACVLTAGTLVEGSMLQDD 452
Query: 390 -AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+ + +AIKE + +G AFVD A + ++ DD + Q P+E+
Sbjct: 453 MSTYCVAIKEAIVDEHHA---FGIAFVDTATGQFFLSEFVDDVDMTKFETFVAQTRPREL 509
Query: 449 IYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYF----NGS 503
+ E + ++A + L+ + + + P +F ++ + ++ + YF + +
Sbjct: 510 LLEKSCVSQKAMRILKNNTGPTTIWNFMKPG---KEFWESEITIRELEASEYFVSADDDN 566
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC--LRMDGQ 560
+ W + L + + SA G L+ +L L ++ D++ G+ Y + L +DGQ
Sbjct: 567 LTAWPETLRQAREKEFLMSAFGALVQYLRMLKIERDLITIGNFTWYDPIKKATSLVLDGQ 626
Query: 561 TL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
TL L+ C+T GKR+ + W+CHPL D + IN RLD V+ L
Sbjct: 627 TLINMEIFANSFDGGSEGTLFQLLNRCITPFGKRMFKQWVCHPLVDSKKINARLDAVDSL 686
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ + L K+PDLERL+ R+ A
Sbjct: 687 NADPSARDQFSSRLTKMPDLERLISRIHA 715
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 175/337 (51%), Gaps = 27/337 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E W + +S +D L S A +SGA+ P P V ++ VL+
Sbjct: 895 FDEHYDTWLAAVRIVSQLDCLISLA----KASGAIGHPSCRP------VFVEDERSVLEF 944
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP L +PNDI LG + LLTG N GKST+LR TC+AVI+AQ
Sbjct: 945 EKLRHPCLLSSVEDF-IPNDIQLGGNHASID----LLTGANAAGKSTVLRMTCVAVIMAQ 999
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC++PC+ L+ D I +RLGA D I +STF VE +ET +L +AT SLVILDEL
Sbjct: 1000 IGCYLPCQSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATPRSLVILDEL 1059
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS++DG A+A AV + I FATHYH L EF +HP + + MA
Sbjct: 1060 GRGTSSYDGVAVAQAVLHHIATHIGALGFFATHYHSLAAEFENHPEIAPKRMAI------ 1113
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS--IGESF 1031
+ ++ + FLY+L +G S+G+ A M G+P KV+E A +AA + + + ES
Sbjct: 1114 -HVDDVERRVTFLYKLENGVAEGSFGMHCASMCGIPSKVIECAENAAKQWEHTSRLKESL 1172
Query: 1032 KSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYD 1068
E R + W + R DD +A D
Sbjct: 1173 ---EHRKGGGYVGLGWWSDVAWALRESVTEDDSNAGD 1206
>gi|225872379|ref|YP_002753834.1| DNA mismatch repair protein MutS [Acidobacterium capsulatum ATCC
51196]
gi|225791956|gb|ACO32046.1| DNA mismatch repair protein MutS [Acidobacterium capsulatum ATCC
51196]
Length = 893
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 208/392 (53%), Gaps = 56/392 (14%)
Query: 712 PDYQNHDVTDLDAETLSILIE---------LFIEKASQWSEVIHAISCIDVLRSFAVTAS 762
P+ +++++ L A+ S+ IE L + A++ V I+ ID+L SFA AS
Sbjct: 523 PELKDYEIKVLTAQDRSVEIEKRIFAELRRLVLSHAARIRRVSVMIAEIDLLASFAHLAS 582
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA--LGENGGLP--VPNDILLGE 818
+ RPL+ PVL++ G HP L E G VPND+ +
Sbjct: 583 LR--GYTRPLL------------ESEPVLELIGARHPVIECLMERAGTTRFVPNDLYV-- 626
Query: 819 DSDDCLPRT------LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
D+ + P LL+TGPNMGGKST LR L VILAQ+GCFVP E L D ++
Sbjct: 627 DATEATPEAASAPHLLLITGPNMGGKSTYLRQAALLVILAQMGCFVPAERMRFGLVDRVY 686
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
TR+GA+D + G STF+VE TETA++L AT SL++LDE+GRGT+TFDG A+A+A
Sbjct: 687 TRIGASDNVARGRSTFMVEMTETATILNTATVRSLILLDEMGRGTATFDGLALAWATLEF 746
Query: 933 LVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSG 992
L + R LFATHYH LT P L ++ A K + + +VFL+R+ G
Sbjct: 747 LHAEVGARTLFATHYHELTMLAEQLPR--LGNLRVAVKESPKG-------IVFLHRMEPG 797
Query: 993 ACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS----IGESFKSSEQRSEFSSLHEEWL 1048
A +SYG++VA +AG+P +V++ A ++S + + Q + F+ L ++ L
Sbjct: 798 AASKSYGIEVARLAGLPPRVIQRARQVLKQHERSERGNVEAETAPALQMTMFTPLSQQIL 857
Query: 1049 KTIVNVSRVDCNS-DDDDAYDTLFCLWHELKN 1079
++ D N+ DA + L HELK
Sbjct: 858 D---RLTETDVNTLTPLDALN----LLHELKT 882
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR---QVGISES 331
+QY K ++ D LLFF++G FYEL+ DA+I +EL +ITL+ + R G+
Sbjct: 18 RQYQAAKREHPDALLFFRMGDFYELFYEDAKIAAREL--QITLTARDRERTQPMCGVPYH 75
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D + +L+ +GY++ +Q+E + T ++ R++ V+TP T +D
Sbjct: 76 AVDGYLSRLLRKGYRIAICDQME-----DPKLTKKIVRREVTRVLTPGTAIDTAFSAGQN 130
Query: 392 HLLAI--KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ LA + G+ G A++D + + A L +++P E+I
Sbjct: 131 NYLAALHRVGDA--------VGLAYLDLSTADFRATEFRGPEALAMALDELGKIAPSELI 182
Query: 450 Y 450
+
Sbjct: 183 F 183
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 534 LMLDDV-LRNGDILPYKVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEG 589
L LD V +RN +++ ++RD +G TL+ LD CVT GKRLLR+ I PL D
Sbjct: 281 LHLDQVSVRNLELVE-PLFRDT---EGDPTLFGALDECVTPMGKRLLRASILRPLMDAAR 336
Query: 590 INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ R V+ ++ V + + + DLERLL ++
Sbjct: 337 LEARYAAVDAARQSLLGREAVRRAMDGILDLERLLAKI 374
>gi|388579806|gb|EIM20126.1| DNA mismatch repair protein Msh6 [Wallemia sebi CBS 633.66]
Length = 1017
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 237/473 (50%), Gaps = 60/473 (12%)
Query: 201 NSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTL 260
N SLL +K R +Q + A K+ E S F +L P D + P YD TL
Sbjct: 60 NKSLL--TKAERQVQQTKAAKKDAE------SPFMFLHPP--YDKYQNPIGHPDYDPHTL 109
Query: 261 YIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGV 320
+IPP+ K+ S +KQ+W +K+ + D +LFF+ GKFYELYE DA IGH+E D K+T V
Sbjct: 110 HIPPKYWKEFSPFEKQFWEIKADHFDTILFFQKGKFYELYENDAIIGHREFDLKLT-ERV 168
Query: 321 GKCRQVGISESGIDDAVEKLVARGYKVGRIEQLET--------------SEQAKA-RHTN 365
C VG+ E D K +A GYKVG++EQ ET + AKA + +
Sbjct: 169 RMC-MVGVPEMSFDFFAAKFLALGYKVGKVEQRETAIGMDMRQRADKKPAGGAKAGKSDD 227
Query: 366 SVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW 423
++ R+L +V+T T VD + D A H ++IKE + + +G +D +
Sbjct: 228 KLVRRELRSVLTNGTLVDPKMLADEAASHCVSIKETSSSINGNKPTFGLCILDASTGEFN 287
Query: 424 VGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTD 483
+ T DD S + L L+ Q+ PKE+++E L + + LR ++ S T + +
Sbjct: 288 LATFEDDKSRSKLETLIRQLRPKEIVHEKGNLDQLTLRVLRNITSISCL--WTSLNSGKE 345
Query: 484 FLDASEVKKLVQLNGYFNGSSSPWSK-----ALENVMQHDIGFSALGGLISHLSRLMLD- 537
+DA ++ + +L FN + K A+E+++++ +LG L+ +L L LD
Sbjct: 346 GMDA--IETITELKNLFNKDNEDADKVKLPDAIESLIENTEAIESLGNLMWYLRSLNLDR 403
Query: 538 DVLRNGDILPYKVYRD--CLRMDGQTL-------------------YLDSCVTSSGKRLL 576
D+L G+ Y R+ + +DG+TL L+ C T GKRL
Sbjct: 404 DLLSLGNFNIYDATREGQAMILDGRTLAHIEVLVNSEGGEDDTLLKLLNRCTTPFGKRLF 463
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
R W+C PL+ + IN RL+ V+ ++ N+ ++ LPDLERLL R+ A
Sbjct: 464 RIWLCTPLRSSKAINERLNAVDDVISNTGFTQEFDSNVKGLPDLERLLSRIHA 516
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 158/292 (54%), Gaps = 26/292 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L F E W + A + ID + S A ++ RP I+ +
Sbjct: 689 LYAAFDEDYKTWIAAVKACAEIDCINSLAKSSINMEEPRCRPTIIEADE----------A 738
Query: 790 VLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
++ L HP AL + V ND+ LG + + T+LLTGPNM GKSTLLR T A
Sbjct: 739 IIDFDQLRHPSMALRRDF---VANDVKLGGNDEG----TMLLTGPNMAGKSTLLRMTAAA 791
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQ+GC+VP + ++ D I +RLGA D + + STF+VE ET+ ++ + T SL+
Sbjct: 792 VIMAQIGCYVPAQSATIAPVDRIASRLGAYDNMFSNSSTFMVELAETSKIVNETTPKSLL 851
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTST G AIA AV + + + C LF+THY L ++HP++ HMA
Sbjct: 852 ILDELGRGTSTTQGIAIASAVLQHIASFLGC-CLFSTHYSSLGDFGSTHPNIKACHMAS- 909
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ NSE +E+ FLY+L G +SYG VA +AGVP VV A A
Sbjct: 910 -EVNSEK-----REIRFLYKLVEGVALDSYGHHVAKLAGVPLPVVVRAEQVA 955
>gi|71018553|ref|XP_759507.1| hypothetical protein UM03360.1 [Ustilago maydis 521]
gi|46098995|gb|EAK84228.1| hypothetical protein UM03360.1 [Ustilago maydis 521]
Length = 1716
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 221/455 (48%), Gaps = 56/455 (12%)
Query: 221 VKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNV 280
++ ++AD + +L + RD NR P D YD RT+YIP A K + ++Q+W +
Sbjct: 337 IEEKRKKADNEEAYSFLLDLRDRDGNR--PGDAEYDSRTVYIPKSAWKDFTPFERQFWEI 394
Query: 281 KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKL 340
K + D +LFF+ GKFYELYE DA IGH+E D K+T K + VG+ E+ D K
Sbjct: 395 KQNHWDTVLFFQKGKFYELYEEDALIGHREFDLKLT--DRVKMKMVGVPEASFDIFAAKF 452
Query: 341 VARGYKVGRIEQLETSEQAKAR-------HTNSVISRKLVNVVTPSTTVDGTIGPDAV-- 391
+A GYKVGR++Q ET+ R + +++R+L +V+T T VD PD +
Sbjct: 453 LALGYKVGRVDQTETAVAKGMRVGERSRGGGSEIVNRELRHVLTSGTIVDAASLPDDLNN 512
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+ ++IKE NG ++G +D A + DD S L LL + KEV++E
Sbjct: 513 YCVSIKESATTGRNGP-IFGVCTLDAATAEFNLTEFEDDESRTRLETLLRSLRLKEVLHE 571
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNG-------- 502
GL + LR +A + L P + +FL+ L +LN FN
Sbjct: 572 KGGLTAPTLRVLRSTVPSTAQITMLKPGL---EFLEPETT--LRKLNALFNPDVDAEARL 626
Query: 503 ------SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRD 553
S + + +++ SALGG++ +L++L LD L RN +I
Sbjct: 627 DSLDAVDPSLLPEGIASMVHRPCAMSALGGMLCYLAQLNLDRDLCSSRNFNIFDPLHQDK 686
Query: 554 CLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
CL +D Q+L L+ CVT GKRL + W+ PL + IN R
Sbjct: 687 CLVLDAQSLTHLNVLQNDEGTDEGTLHRLLNRCVTPFGKRLFKIWLVAPLATADAINARQ 746
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
D VE L+KN + + LPD+ER++ RV+A
Sbjct: 747 DAVEDLLKNPCFGDQFETFGKALPDIERIVPRVRA 781
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 172/325 (52%), Gaps = 26/325 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L F E++ + + I+ ID L S A +S A+ P P+ + N
Sbjct: 956 LFASFSEQSDVFLRAVKTIAEIDCLLSLA----KASYAIGEPSCRPELVH------NETA 1005
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+++ + L HP G+N +PNDI LG +D+ + +LTG NM GKST R AV
Sbjct: 1006 LIEFEELRHPCIAGDNVDF-IPNDIRLGGKNDEVV----ILTGGNMAGKSTTARTCATAV 1060
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
ILAQLGC VP LS D I +R+GA D+I STF+VE E + ++ + T SLVI
Sbjct: 1061 ILAQLGCRVPALSARLSPVDRIASRMGANDQIFGNNSTFMVEMLEASRIINECTPRSLVI 1120
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGTSTFDG AIA+AV LV R C F THY L +F S+ V+ +HM
Sbjct: 1121 MDELGRGTSTFDGQAIAFAVLHHLVSRTRCLAFFLTHYTNLAYDFDSYSRVSNKHMQVLV 1180
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +E++F YRL G SYG QVA +AGVP ++ + A+ + K +
Sbjct: 1181 DDDK-------REVIFTYRLIDGIAESSYGTQVAALAGVPHEICDRAA----VVSKQFAD 1229
Query: 1030 SFKSSEQRSEFSSLHEEWLKTIVNV 1054
+ K+S+ S++ L V++
Sbjct: 1230 ATKASQSEKNKSAIPLTLLSDFVHL 1254
>gi|154293501|ref|XP_001547279.1| hypothetical protein BC1G_13901 [Botryotinia fuckeliana B05.10]
Length = 737
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 168/312 (53%), Gaps = 24/312 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F E W + + ++ +D L S A +S RP +
Sbjct: 394 EVASRFYARFDEDYKTWLQAVKVVAQLDCLVSLAAASSALGTTSCRPKFV---------- 443
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ V++ + L HP L N +PND+ LG S P LLTG N GKST+LR
Sbjct: 444 DSERSVVEFEELRHPCVL-PNVTDFIPNDVQLGGQS----PNINLLTGANAAGKSTILRM 498
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC+AVI+AQLGC+VP + L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 499 TCVAVIMAQLGCYVPAKSATLTPVDRIMSRLGANDNIFAAQSTFFVELSETKKILSEATP 558
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG ++A AV + I C FATHYH L EF SHP V +
Sbjct: 559 RSLVILDELGRGTSSYDGVSVAQAVLHHVASHIGCIGFFATHYHSLALEFDSHPEVINKR 618
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA--LA 1022
MA + S + ++FLY+L +G S+G+ A M G+P+KVV+ A AA
Sbjct: 619 MAIEVDNES-------RSVLFLYKLENGVAEGSFGMHCASMCGIPRKVVDRAEVAAREWE 671
Query: 1023 MKKSIGESFKSS 1034
+GES + +
Sbjct: 672 FTSRLGESLERA 683
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 30/180 (16%)
Query: 483 DFLDASEVKKLVQLNGYF---NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD- 538
+FL A + ++ + GYF +G W + LE D+ SA G L +L L L+
Sbjct: 53 EFLSAEKSRRELDYGGYFTSADGGKETWPEELEKARDKDLLISAFGALFQYLKFLQLEKP 112
Query: 539 VLRNGDILPYKVYRD--CLRMDGQTL--------------------YLDSCVTSSGKRLL 576
+L G+ Y + L +DGQTL LD C T GKRL
Sbjct: 113 LLTQGNFSWYNPIQKGTTLVLDGQTLINLEIFSNTFDGNSDGTLYTLLDRCTTPFGKRLF 172
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC 636
R W+ HPL D++ IN RLD V++L +++E+ +PDLERL+ +R+ A SC
Sbjct: 173 RQWVSHPLSDIKRINERLDAVDFLNRDNELSRSFKSSTSAMPDLERLI----SRIHAGSC 228
>gi|30249667|ref|NP_841737.1| DNA mismatch repair protein MutS [Nitrosomonas europaea ATCC 19718]
gi|44888191|sp|Q82U08.1|MUTS_NITEU RecName: Full=DNA mismatch repair protein MutS
gi|30180704|emb|CAD85616.1| mutS; DNA mismatch repair protein [Nitrosomonas europaea ATCC 19718]
Length = 873
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 167/557 (29%), Positives = 256/557 (45%), Gaps = 103/557 (18%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLPDLE 621
LD+C T G RLLR W+ HPL++ + RLD V L+ + + Q + + D+E
Sbjct: 301 LDTCSTGMGSRLLRHWLHHPLRNRITLQQRLDTVSDLIGAQPETLYAGIRQQFKHIADIE 360
Query: 622 RLLGRVKARVQA--------SSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
R+ R+ R S + LP I + + + ++ L L+ +
Sbjct: 361 RITSRIALRTARPRDLSGLRDSLMRLPGIIELIATSAAAAVHRFIPPMQPDPLLTQLLVR 420
Query: 674 EGHIIPSLSRIFKPPIFDGSD-------GL----DKFLTQFEAA---------IDSDF-- 711
+P I DG D GL D+FL Q EA + ++
Sbjct: 421 ALQPVPGAVIREGGVIADGFDAELDELRGLQGNCDEFLLQLEARERERTGIPNLKVEYNR 480
Query: 712 -----------------PDY---------QNHDVTDLDA---ETLS----------ILIE 732
PDY + + + +L A +TLS +L E
Sbjct: 481 VHGFYIEVTRAQGEKIPPDYRRRQTLKNAERYIIPELQAFEHKTLSAREQALAREKMLYE 540
Query: 733 LFIEKASQW----SEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGG 788
+E+ + + E+ +++ +DVL +FA A++S P D
Sbjct: 541 RLLEQLADFIIPLQEIARSVAELDVLCAFAERAALSG-----------YTKPVFTDD--- 586
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
PVL I+ HP + + ND+ LG + + + L++TGPNMGGKST +R T L
Sbjct: 587 PVLIIEAGRHPVVENQVEHY-IANDVQLGAITRENR-QMLVITGPNMGGKSTYMRQTALT 644
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LA G FVP ++ + D IFTR+GA D + G STF+VE TE A +L+ AT SLV
Sbjct: 645 VLLAHCGSFVPAQIARIGPIDQIFTRIGAADDLAGGRSTFMVEMTEAAGILRNATAQSLV 704
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DE+GRGTSTFDG A+A+A+ R L+ + LFATHY LT+ P H+
Sbjct: 705 LVDEIGRGTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRLAEEFPQAVNIHVTAV 764
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
+ + +VFL+R+ G SYGL VA +AGVP +V+ +AA + +
Sbjct: 765 ---------EHKRRIVFLHRIEEGPASRSYGLHVAALAGVPDRVIR---NAAKILARLEQ 812
Query: 1029 ESFKSSEQRSEFSSLHE 1045
E+ S Q++ F ++ E
Sbjct: 813 ETLSRSPQQTLFETVEE 829
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---CRQVGISES 331
+QY +K+Q+ D LLF+++G FYEL+ DAE K LD +T G + G+
Sbjct: 14 QQYLRIKAQHTDKLLFYRMGDFYELFYEDAEKAAKLLDITLTQRGSSAGEPIKMAGVPFH 73
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD-- 389
D + +LV G + EQ T + A ++ + R+++ ++TP T D + +
Sbjct: 74 AADQYLARLVRLGESIAICEQ--TGDPATSK---GPVERQVIRILTPGTLTDAGLLEERS 128
Query: 390 --AVHLLAIKEGNCG 402
V LA+ G+ G
Sbjct: 129 NSIVLALALHRGSIG 143
>gi|392562069|gb|EIW55250.1| DNA mismatch repair protein Msh6 [Trametes versicolor FP-101664
SS1]
Length = 1247
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 164/540 (30%), Positives = 248/540 (45%), Gaps = 80/540 (14%)
Query: 220 GVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWN 279
+K +E+ T F +L +RD + RP P YD RTLYIPP A + +KQ+W
Sbjct: 277 ALKQKDEKKSTEDPFSFL--VDVRDKDEVRPGQPGYDPRTLYIPPRAWTSFTPFEKQFWE 334
Query: 280 VKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEK 339
+K + D +LFF+ GKF ELYE DA +GH+E D K+T K VG+ E + K
Sbjct: 335 IKQNHFDTILFFQKGKFLELYEEDARVGHREFDLKLTQR--VKMSMVGVPEMSFNFWAAK 392
Query: 340 LVARGYKVGRIEQLETS---------------EQAKARHTNSVISRKLVNVVTPSTTVDG 384
+A+GYKVGR++Q ET+ E AK + + ++ R+L V T T VD
Sbjct: 393 FLAKGYKVGRVDQAETALGAEMRLAADKKNKKEPAKDKGKDKIVRRELNKVYTNGTLVDE 452
Query: 385 TIGPD--AVHLLAIKEGNC--GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
+ D A H ++I+E +G +G +D A + DD L ++
Sbjct: 453 ELLTDEQAGHCVSIREEEAVETDKDGKQTFGICVLDSATSEFNLSAFEDDICRTKLETMM 512
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGS---AALELTPAMAVTDFLDASEVKKLVQLN 497
Q+ PKE+I+ L + L+ G+ +L + + + E+KKL +
Sbjct: 513 RQLRPKEIIFTKGNLSVSTTRLLKSILPGNCLWTSLRESEGFKYNEAI--KELKKLYPAD 570
Query: 498 GYF-------NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVL--RNGDILP 547
+G + + + ++ H ALG +I +L L +D D+L +N ++
Sbjct: 571 EDDDEMADNPHGLTKAVPEPIRRMLPHQGAIQALGSMIWYLHTLNIDKDILSMKNFNVYD 630
Query: 548 YKVYRDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVE 588
L +DGQTL L C+T SGKRL R W+C PL++V+
Sbjct: 631 PMKRGQGLVLDGQTLAHVEVLQNNEGTEEGTLLKLLGRCITPSGKRLFRIWLCMPLREVK 690
Query: 589 GINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLK 648
IN RLD V+ L+++ + LPDLER++ +R+ A +C V I KVL
Sbjct: 691 DINARLDAVQDLLEHPTFEKDFTAIAKGLPDLERIV----SRIHAKNCKVKDFI--KVL- 743
Query: 649 QQVKVFGSLVKGLRI---------AMDLLMLMHKEGHIIPSLSRI---FKPPIFDGSDGL 696
F SL KGL + + L+ + P+L I FKPP GSD L
Sbjct: 744 ---GAFRSLSKGLSALAETADSFDSKSIPGLLRTAPDLTPNLKHIQAMFKPPE-SGSDEL 799
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 153/303 (50%), Gaps = 28/303 (9%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S W I ++ +D L S A +S A+ P P+ V D ++ + L H
Sbjct: 918 SVWLRAIRVLAELDCLFSLA----KASSALGEPACRPE----LVEGDEA--FIEFEDLRH 967
Query: 799 PFALGENGGLP---VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
P AL +G L +PN++ LG + + + LLTG GKST +R T +I+AQLG
Sbjct: 968 P-ALCASGSLKGDFIPNNVKLGGE----VGKIALLTG---TGKSTAMRMTAAGIIMAQLG 1019
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
VP L D+I TR+GA D + + STF VE E +L+ AT S VILDELGR
Sbjct: 1020 MLVPAAKARLCPVDSILTRMGAYDNMFSNASTFKVELDECCKILRDATPKSFVILDELGR 1079
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTST+DG AIA AV +L FATHY LT +FA HP++ HM
Sbjct: 1080 GTSTYDGMAIAAAVLHELATHTLSLSFFATHYGSLTDDFAYHPNIRNMHMQTLVDDEK-- 1137
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 1035
+ELVFLY+L G S+G VA +AGVP VVE A + K E + +
Sbjct: 1138 -----RELVFLYKLVEGVASSSFGTHVANLAGVPLAVVERAEVVSRDFAKHFQEKVEGKK 1192
Query: 1036 QRS 1038
++
Sbjct: 1193 NKA 1195
>gi|71032141|ref|XP_765712.1| DNA repair protein [Theileria parva strain Muguga]
gi|68352669|gb|EAN33429.1| DNA repair protein, putative [Theileria parva]
Length = 1160
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 195/354 (55%), Gaps = 40/354 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
++ F + ++ ++I + D L S A A S M RP + P+S+N +D+ P
Sbjct: 840 IVSKFHSNSYKFCKLIEIAAQFDCLTSLATVAKNSPFPMCRPKLHPKSQNILRVKDSVYP 899
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ I G + F VPN + +GE D + L++TGPNMGGKSTLLR L V
Sbjct: 900 IFSISG--NKF---------VPNSVNIGEGFDGPI---LIITGPNMGGKSTLLRQIALTV 945
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+ Q+G FV C S+ D+IFTRLGA+D I+ G+STFLVE + +S+L KAT SL +
Sbjct: 946 IMGQIGSFVSCVESEFSVVDSIFTRLGASDNILQGKSTFLVELQDISSILSKATSSSLAL 1005
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGTSTFDG AIA A + + +I CR +F TH+ + S +V++ HMA
Sbjct: 1006 IDELGRGTSTFDGTAIAVATLEK-ISKIGCRCVFTTHFQDVCMFAESLSNVSMFHMA--- 1061
Query: 970 KSNSENYSKGDQE---LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+K D+E + FLY+L G CP+S+G+ VA +A VP+ +++ A A + + S
Sbjct: 1062 -------AKVDEETRSVEFLYKLVPGVCPDSHGMHVAKLARVPEHIIQNAMEARMRLYNS 1114
Query: 1027 --IGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELK 1078
GE +S + E L EE L+ N +D+D ++ + LK
Sbjct: 1115 EVFGEGESASNKLLEI--LTEEILEAHYN--------NDNDKLKEIYNKYSHLK 1158
Score = 136 bits (342), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 198/465 (42%), Gaps = 91/465 (19%)
Query: 221 VKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK--------KMSA 272
V+N + T S WL+P +RD+ R+P YD TL+IPP+ + +
Sbjct: 181 VENYYKYKGTFSFPPWLEPKNLRDSEGRKPLGDGYDSSTLWIPPKGHRWAHEFRSGHYTE 240
Query: 273 SQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEI--GHKELDWKITLSGVGKCRQVGISE 330
+Q+W+VK + D L+FFK+GKFYEL+ DA I G L W G VG E
Sbjct: 241 CMQQWWDVKRTHFDSLVFFKMGKFYELFYQDACILQGLTGLRWM----GAETKPHVGFPE 296
Query: 331 SGIDDAVEKLVARGYKVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPSTTVDGT 385
I V GY+V +EQ ET +Q R+ T + R + +++TP T
Sbjct: 297 KSIHSYASACVNAGYRVVVVEQTETPQQLDKRNKASGTTARAVKRDVCDIITPGTVAAPE 356
Query: 386 IGPDAVHLLAIKEGN---------------CGPDNGSVVYGFAFVDCAALRVWVGTINDD 430
+ L I G + S V +D + ++ GT+
Sbjct: 357 MLTSQSRPLLIMSGTKSETQPQPAPSESEETKSETPSAV-EIVCLDVSMSKIRFGTVKYT 415
Query: 431 ASCAALGALLMQVSPKEVI-----YENRGLCKEAQKALRKFSAG---------------- 469
+ +L+ P EV+ Y+N+ L K A KAL +SA
Sbjct: 416 DDLLQVKTVLIHFCPAEVVLDSVLYDNKELVK-AIKAL-PYSADVTLHVPQNKSKNLLNK 473
Query: 470 ------SAALELTPAMAVTD-FLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS 522
S A E + ++ +T+ +L + KLV YF P++ + VM D +S
Sbjct: 474 VKDKWESEASECSTSLTLTESYLSLVLLNKLVDY-CYF----EPFNFSQLEVMGMD--YS 526
Query: 523 ALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICH 582
AL HL + + + YL+ T+ G+RLLR W+ +
Sbjct: 527 AL----VHLELFVTQEGTEKNSLFH---------------YLNHTKTAFGERLLRYWLLN 567
Query: 583 PLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
PL DV+ IN R + VE+L+ N +V + Q L + PDLER LG++
Sbjct: 568 PLTDVDAINLRSEAVEFLVHNYPLVTTLNQELERFPDLERSLGKI 612
>gi|403351687|gb|EJY75340.1| hypothetical protein OXYTRI_03275 [Oxytricha trifallax]
Length = 445
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 153/241 (63%), Gaps = 16/241 (6%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L + + F + + W+ +H ++ +D L + A+ ++ M RP++ Q + P ++
Sbjct: 11 LQDMFQRFYQFRNVWNNAVHCMAELDALCALAMISN--EKGMVRPIVHSQIEKPFIQ--- 65
Query: 787 GGPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
I+G+ HP L + G V ND+ + D R LL+TGPNMGGKSTLLR+T
Sbjct: 66 ------IEGMRHPCIILQQKGKEFVANDVDIDYDKQ----RALLITGPNMGGKSTLLRST 115
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
CL +ILAQ+GCFVP + C ++ D I+TR+GA+DRI+ STF +E +ET S++ A ++
Sbjct: 116 CLIIILAQVGCFVPAQTCEFTIVDQIYTRIGASDRILENLSTFKLELSETKSIVDNANKN 175
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SLVI+DELGRGTSTFDGYAIA++V L++ CRLLF THYH L +F P V L HM
Sbjct: 176 SLVIMDELGRGTSTFDGYAIAHSVLNYLLKEKKCRLLFTTHYHWLVDDFKEVPGVALYHM 235
Query: 966 A 966
+
Sbjct: 236 S 236
>gi|157130502|ref|XP_001661901.1| DNA mismatch repair protein muts [Aedes aegypti]
gi|108871885|gb|EAT36110.1| AAEL011780-PA [Aedes aegypti]
Length = 1130
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 167/288 (57%), Gaps = 20/288 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F W I +DVL S A A S G M P IL D+ G
Sbjct: 821 IFEKFSSSYEMWRTCIDLTGTLDVLTSLAEYAR-SEGNMCVPEIL---------DDSAGQ 870
Query: 790 VLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
V +++ HP + EN +PN + +G + +LLTGPN+GGKST++R +
Sbjct: 871 VFELEEGIHPCVSDSENY---IPNGVNIGGEG----APLVLLTGPNIGGKSTMMRQVGIL 923
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQ+G +P E C ++L D IFTRLGA D IM G STFLVE ET+++L+ AT+ SLV
Sbjct: 924 AVMAQIGSRIPAESCRMTLIDRIFTRLGANDDIMAGHSTFLVELNETSTILKHATRKSLV 983
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDELGRGT+T+DG +IA AV L + + CR +F+THYH L F++ V L HMAC
Sbjct: 984 LLDELGRGTATYDGTSIAGAVVNFLAD-LKCRSMFSTHYHNLVDNFSTDSRVRLGHMACM 1042
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ N ++ + + FLY+ GACP+SYG A +AG+P +++ A
Sbjct: 1043 VE-NEDDEDPTQETVTFLYKYADGACPKSYGFNAAKLAGMPACIIKRA 1089
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 136/453 (30%), Positives = 207/453 (45%), Gaps = 67/453 (14%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K ++L P KI+D RP YD RTLY+P L ++ + +Q+W +K ++MD +LFFK
Sbjct: 172 KLDFLKPEKIKDIQGNRPSSEKYDSRTLYVPESFLGTLTPAMRQWWELKCRHMDCVLFFK 231
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA +G +EL + G+ G E + LV +G+KV R+EQ
Sbjct: 232 VGKFYELYHMDATVGVEELGFSYM---KGEFAHSGFPEQAYERMATLLVDKGFKVARVEQ 288
Query: 353 LET----SEQAKARHTNS----VISRKLVNVVTPSTTVDG-----TIGPDAVHLLAIKEG 399
ET E+ + TNS V+ R++ V T V G T+ ++LAI E
Sbjct: 289 TETPDMMQERCRKNKTNSKYDKVVKREICQVSLKGTEVFGQQVHLTLNHQPKYMLAITER 348
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
G + GS YG F+D + VG DD+ + L LL +P V+ E +
Sbjct: 349 IKG-EVGS-RYGVCFIDTSLGVFHVGEFEDDSQGSRLLTLLSHYAPALVLQERNVVSAAT 406
Query: 460 QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS----SPWSKALENVM 515
Q+ + AG LT + F A K + N ++ GS+ S W + + +++
Sbjct: 407 QQIFKTVLAGIRKEALTNE---SQFWSAERTLKYLAEN-FYGGSTDDQNSKWPEVIRSLL 462
Query: 516 ------------QHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDC-------- 554
+ ALGG I +L R +LD ++ + Y D
Sbjct: 463 DKSDHLGLTPDGNFKLALKALGGCIWYLKRCLLDQQIISLASFVMYIPPDDVETCKNLRI 522
Query: 555 ------LRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
+ +D TL +D C T GKRLL WIC P + + I R
Sbjct: 523 VNSNRFMVLDSVTLNNLRITEGEQSLVNRMDHCCTKFGKRLLHHWICSPSCERDVIVQRQ 582
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ V L+++ ++ V Q L +LPDLER+L ++
Sbjct: 583 EAVTELIEDVSLLQDVRQILGELPDLERMLAQI 615
>gi|299742330|ref|XP_001832397.2| DNA mismatch repair protein msh6 [Coprinopsis cinerea okayama7#130]
gi|298405134|gb|EAU89431.2| DNA mismatch repair protein msh6 [Coprinopsis cinerea okayama7#130]
Length = 1269
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 223/469 (47%), Gaps = 62/469 (13%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
IRD + RRP +P YD RT+YIP +A + + +KQ+W +K + D +LFF+ GKF+ELYE
Sbjct: 323 IRDKDGRRPGEPDYDPRTIYIPKKAWAEFTPFEKQFWEIKQNHYDTVLFFQKGKFFELYE 382
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T S V K VG+ ES + K + +GYKVGR+EQ ET+ A+
Sbjct: 383 DDARIGHQEFDLKLT-SRV-KMSMVGVPESSFNFWAAKFLGKGYKVGRVEQAETALGAEM 440
Query: 362 RHT--------------NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC--GP 403
R + ++ R+L V T T VD + D A H +AI E C G
Sbjct: 441 RMAAAKGKGKVSEDKAKDKIVRRELNKVYTNGTLVDDALLTDENAGHCIAICEQPCEDGS 500
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
D+ + +G +DC+ + + DD L LL Q+ PKE+++ + Q+ L
Sbjct: 501 DSAN-KFGICVLDCSTSQFNLTGFVDDICRTKLETLLRQICPKELLFYKGSFSVDTQRVL 559
Query: 464 RKFSAGS---AALELTPAMAVTDFLDA------SEVKKLVQLNGYFNGSSSPWSKALENV 514
+ L D L A SE + + G +++ +
Sbjct: 560 KAVLPSDCLWTGLREVEGFKYDDALKALKDLFPSEEDAMEEDEGEAQLLPPSVPESIRKM 619
Query: 515 MQHDIGFSALGGLISHLSRLMLDD---VLRNGDILPYKVYRDCLRMDGQTL--------- 562
ALG +I +L +L +D +RN +I L +DGQTL
Sbjct: 620 ATDKCAIEALGSMIWYLRQLNIDKDIVTMRNFNIYDPMERNQGLVLDGQTLAHLEILLNN 679
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
L C+T GKRL R W+C PL++V IN RLD VE +MK+ ++
Sbjct: 680 EGSEDGSLFHLLRRCITPFGKRLFRIWLCMPLREVSAINARLDAVEDIMKHPTFESSFSE 739
Query: 613 YLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL 661
+ +PDLER++ +R+ A +C V + KVL F SL +GL
Sbjct: 740 LAKGIPDLERIV----SRIHAKNCKVKDFL--KVL----STFKSLSRGL 778
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 157/306 (51%), Gaps = 22/306 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + SQW I + +D L S A ++ RP + + ++
Sbjct: 932 FDKDRSQWLRAIRVFAELDCLFSLAKASAAIGSPSCRPEFI----------EGDSAFIEF 981
Query: 794 KGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
+ L HP L + V ND+ +G + P+ +LLTGPNM GKSTL+R T + VI+A
Sbjct: 982 EDLRHPTICLNRHIESFVENDVKMGGED----PKIILLTGPNMAGKSTLMRMTSIGVIMA 1037
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
QLG VP L D+I TR+GA D + T STF +E E +L+ AT SLVILDE
Sbjct: 1038 QLGMLVPASRARLCPVDSIITRMGAYDNMFTNSSTFKIELDECCKILRNATPKSLVILDE 1097
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTSTFDG AIA +V +L FATHY LT ++A HP++ HM+
Sbjct: 1098 LGRGTSTFDGMAIAGSVLHKLATHTLPLAFFATHYGSLTDDYAYHPNIRRMHMSTMVDEE 1157
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
Q+L FLY+L GA S+G VA +AGVP VVE A + K E +
Sbjct: 1158 R-------QQLTFLYKLVDGAATSSFGSHVARLAGVPDTVVERADDVSAEFAKQFKERLQ 1210
Query: 1033 SSEQRS 1038
+++S
Sbjct: 1211 LKKKQS 1216
>gi|331091141|ref|ZP_08339983.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405363|gb|EGG84899.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_46FAA]
Length = 883
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 190/646 (29%), Positives = 293/646 (45%), Gaps = 99/646 (15%)
Query: 521 FSALGGLISHLS-RLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSW 579
S L G+IS+ + + ML D ++ + R+ + LD T+ G R LRS+
Sbjct: 252 LSHLTGIISYTTGKYMLLDSSTRRNLELCETLREKQKRGSLLWVLDKTKTAMGARTLRSY 311
Query: 580 ICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ------- 632
+ PL + E I RLD V L N+ + +YL + DLERL+ ++ +
Sbjct: 312 VEQPLINKEDILARLDAVGELKDNAIAREEIREYLTPVYDLERLISKITYQSANPRDLTA 371
Query: 633 -ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFD 691
SS +LP I + + SL + L DL L+ P L+ I D
Sbjct: 372 FQSSLAMLPHIKYILSDMTSPLLMSLYRELDTLEDLCELVQSAIKEEPPLAMKEGGIIKD 431
Query: 692 GSDG-LDK-------------------------------------FLTQFEAAIDSDFPD 713
G D +DK + + + PD
Sbjct: 432 GYDAEVDKLRNAKTEGKTWLAELEAEEREKTGIKNLKIKYNKVFGYYLEVTNSYKELVPD 491
Query: 714 YQNHDVTDLDAETLSI-----LIELFIEKASQWSEVIHAISCI-------DVLRSFAVTA 761
Y T +AE I L + + + + + I C +V+R
Sbjct: 492 YYTRKQTLANAERYIIPRLKELEDTILGAEDKLYALEYEIYCKIRDKIADEVVRIQKTAK 551
Query: 762 SMSSGAMHRPLILPQSKNPAVR-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS 820
+++ + L L +N VR + N V+ IK HP +PND+ + D+
Sbjct: 552 AIAKIDVFASLALVAERNNYVRPKINEKGVIDIKNGRHPVVEK-----MIPNDMFIANDT 606
Query: 821 --DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
DD R ++TGPNM GKST +R T L V++AQ+G FVP E + + D IFTR+GA+
Sbjct: 607 LLDDKKNRVSIITGPNMAGKSTYMRQTALIVLMAQIGTFVPAESANVGIVDRIFTRVGAS 666
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VER 936
D + +G+STF+VE TE A++L+ AT SL+ILDE+GRGTSTFDG +IA+AV + +
Sbjct: 667 DDLASGQSTFMVEMTEVANILRNATNRSLLILDEIGRGTSTFDGLSIAWAVVEHISNAKL 726
Query: 937 INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
+ + LFATHYH LT+ V + A K KGD ++VFL ++ G +
Sbjct: 727 LGAKTLFATHYHELTELEGKIDSV--NNYCIAVK------EKGD-DIVFLRKIVKGGADK 777
Query: 997 SYGLQVAVMAGVPQKVV----EAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKT-I 1051
SYG+QVA +AGVP+ V+ E S + A + + K Q S+ + +++ + +
Sbjct: 778 SYGIQVAKLAGVPESVILRAKEIVSELSEADITTRVKDIKIQGQESKARTKQKKYDEVDL 837
Query: 1052 VNVSRVDCNSDDD----------------DAYDTLFCLWHELKNSY 1081
+S D DDD DA +T++ L ++LKN +
Sbjct: 838 AQMSLFDTVKDDDVLKELEELDVSRMTPMDALNTIYRLQNKLKNRW 883
Score = 69.3 bits (168), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ +++ +QY +K QY D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 1 MSELTPMMQQYVEMKKQYQDCILFYRLGDFYEMFFDDAVTASQELELTLTGKNCGMEERA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ + +LV++GYKV EQ+E + AK ++ R++V +VTP T ++
Sbjct: 61 PMCGVPYHAVEGYLTRLVSKGYKVAICEQVEDPKVAKG-----IVKREVVRIVTPGTNLN 115
>gi|164656521|ref|XP_001729388.1| hypothetical protein MGL_3423 [Malassezia globosa CBS 7966]
gi|159103279|gb|EDP42174.1| hypothetical protein MGL_3423 [Malassezia globosa CBS 7966]
Length = 799
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 164/284 (57%), Gaps = 19/284 (6%)
Query: 745 IHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
+HA++ IDVL S A AS P P V + G +++++ HP
Sbjct: 501 VHALATIDVLTSLARVASR-----------PGYVRPHV--HDQGNLIQLRQCRHPVTEAR 547
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
G +PNDI LG PR +LLTG NMGGKS+++RA L +I+AQ+G FVPC+
Sbjct: 548 TNGY-IPNDIALGSLKQTEAPRGMLLTGSNMGGKSSMMRAIALTIIMAQIGSFVPCQSAE 606
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
++ D I +R+GA D I+ GESTFLVE ETA +L+ +T +LV+LDE GRGTSTFDG A
Sbjct: 607 ITCRDAIASRMGARDDILRGESTFLVEARETAFILRTSTPRTLVLLDEFGRGTSTFDGMA 666
Query: 925 IAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
+AYAV R +ER LLF THY PLT+ P Q M + + + E
Sbjct: 667 LAYAVLRSFLERGPAMPTLLFITHYVPLTRLAHLFPQ---QLMNVHMQVQIMRHQGKEDE 723
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+VFL+R+ GA S+G+ A ++G+P ++E A AL ++++
Sbjct: 724 VVFLHRVLPGAASRSFGIHAAALSGIPTTIIERAKSKALELEEA 767
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 124/322 (38%), Gaps = 54/322 (16%)
Query: 337 VEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTI---GPDAVH 392
V++L+A GYKVG Q ET +A + N RKL V T ST +D D
Sbjct: 11 VKRLIAHGYKVGVCRQTETRALKAVTENANRPFERKLSGVYTASTWIDHVSCCEKSDEQV 70
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+ AI + F +D A + DD++ L +M + P+EV+ +
Sbjct: 71 ICAIVDRPTS--RTCTALAFVSIDMATSSITYDEWLDDSTREGLYTRIMHLVPREVVLLS 128
Query: 453 RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSSSPWSKAL 511
L ++A+ ++A SA + E ++ + L + G W+ A
Sbjct: 129 -SLSDGTRRAVSMYAAASATYNVR-----------METREAFEPLASFLQGDVLAWALAA 176
Query: 512 ENV------------------------MQHDIGFSALGGLISHLSRLMLDDVLRNGDILP 547
V + H F++ ++ S L ++LRN
Sbjct: 177 CPVEVQRALALLLTYLATYDLTSAFHYVDHYATFTSRSSMVLSGSTLSHLELLRNATDHG 236
Query: 548 YKVYRDCLRMDGQTLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSE 605
DG +L D C TS G+RLLR WI PL D I R D V L +
Sbjct: 237 ---------GDGSLFWLLDECATSMGRRLLRQWIRRPLVDPVAIQARADAVSLLRERRDR 287
Query: 606 VVMVVAQYLRKLPDLERLLGRV 627
++ V L LPDL R L R+
Sbjct: 288 ILHRVVSLLTHLPDLTRGLTRI 309
>gi|308505948|ref|XP_003115157.1| CRE-MSH-6 protein [Caenorhabditis remanei]
gi|308259339|gb|EFP03292.1| CRE-MSH-6 protein [Caenorhabditis remanei]
Length = 1181
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 123/299 (41%), Positives = 164/299 (54%), Gaps = 27/299 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+ E F K W E + +S DVL S A ++ M P D+ P
Sbjct: 857 VFEQFGHKNPVWLETVRLVSNFDVLTSLATFSNSCPFDMCMP---------EFDFDSTKP 907
Query: 790 VLKIKGLWHP-FALGENGGLP-----VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
L ++ HP AL + + N ++GE +LLTGPNMGGKSTL+R
Sbjct: 908 YLVVEKGVHPCLALQSRNEVTQTTSFIANSTMMGEKE----AAVMLLTGPNMGGKSTLMR 963
Query: 844 ATCLAVILAQL-----GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
T + ILA + GC VP L+ D IFTR+GA DRIM GESTF +E ET +
Sbjct: 964 QTAVLAILAHIVIVFQGCKVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIM 1023
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ AT+ SL+++DELGRGTSTFDG AIA AV +++ + I CR F+THYH + F +H
Sbjct: 1024 LKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKIADDIICRTFFSTHYHSICDSFTNHE 1083
Query: 959 HVTLQHMACAF-KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+V L HM C K N+E+ + D + FLY L SG CP+SYG A +AG+ +VV A
Sbjct: 1084 NVRLAHMKCVVDKENNEDPTMED--VTFLYELESGICPKSYGFYAAKLAGIDHQVVRNA 1140
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/519 (26%), Positives = 233/519 (44%), Gaps = 78/519 (15%)
Query: 178 GMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADT--TSKFE 235
+ +V+P + + + + +K N + ++ + ++ + K EE A+ +
Sbjct: 145 NVRKVIPDIDEV--SMVAVKEKMNKIMEGGGEKRKNVEKGGSKKKQEEEPAERFDHESLD 202
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
WL P KIRD +R DP YD +TL++PPE +K + +Q+W +KSQ+ D ++ FKVGK
Sbjct: 203 WLKPDKIRDGCKRPMSDPEYDPKTLWVPPEFHQKQTPGHRQWWTIKSQHFDTIILFKVGK 262
Query: 296 FYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLET 355
FYE Y +DA + L+ G G E ++L+ GYKV R+EQ ET
Sbjct: 263 FYETYHMDAVEVVRALNIAFMR---GSYAHAGFPEHAASKFADQLMNHGYKVARVEQTET 319
Query: 356 SEQAKARHTNS-----VISRKLVNVVTPST----TVDG--------TIGPDAVHLLAIKE 398
+ + R+ + V+ R++ V + T +DG T+ P A HLLAIKE
Sbjct: 320 PQMLEERNQKTKAKDKVVRREVCRVTSNGTRTYGVLDGVDLGSAASTLDPTAKHLLAIKE 379
Query: 399 GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKE 458
+ + G YG +D + +G +DD + L LL V + + E R
Sbjct: 380 FH-NAETGKSSYGICMIDTTTAHIRIGQFDDDDYRSKLRTLLANVIVVQTLVE-RNTISA 437
Query: 459 AQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQH- 517
+ K++ S +E +A F+ + +V +LV + YF S W L++++
Sbjct: 438 STKSIINGILFSVPIE--HLLAKKQFMTSDDVVRLVSNDDYFGSDVSGWPDVLKSMLDES 495
Query: 518 ----------DIGFSALGGLISHLSRLMLD-DVL--RNGDILPYKVYR------------ 552
++ SA G ++ +L ++D D+L RN K +
Sbjct: 496 SVLPKPSSDWNLALSAFGAIVWYLRDSLIDVDMLSMRNVTFYDSKTSKTEKQSSKDKKID 555
Query: 553 ---DCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
L +DG L ++ C T G+RLLRSW+ P D + +
Sbjct: 556 WTGKNLILDGTALENLNIVPNGRDSHLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKL 615
Query: 591 NNRLDVVEYLMKN--SEVVMVVAQYLRKLPDLERLLGRV 627
R + V+++ + + V V L+K+PDL+RLL ++
Sbjct: 616 RLRQEAVKWMTSSDATSFVNVATATLKKIPDLDRLLQKI 654
>gi|366990175|ref|XP_003674855.1| hypothetical protein NCAS_0B03980 [Naumovozyma castellii CBS 4309]
gi|342300719|emb|CCC68482.1| hypothetical protein NCAS_0B03980 [Naumovozyma castellii CBS 4309]
Length = 1184
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 157/284 (55%), Gaps = 15/284 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W +H IS ID L + T+ RP++ + + NG LK L H
Sbjct: 837 TTWMPTVHVISNIDCLLALTRTSESLGYPACRPVLRDEVNLETGTKLNG--YLKFTSLRH 894
Query: 799 P-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
P F LG + +PND+ LG+DS P+ LLTG N GKST+LR TC+AVI+AQ+GC
Sbjct: 895 PCFNLGSSSTKDFIPNDVELGKDS----PQLGLLTGANAAGKSTVLRMTCIAVIMAQMGC 950
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VPCE L+ D I TRLGA D IM G+STF VE +ET +L AT SL++LDELGRG
Sbjct: 951 YVPCESAELTSFDRIMTRLGANDNIMQGKSTFFVELSETKKILDLATNRSLLVLDELGRG 1010
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1011 GSSNDGFAIAESVLHHVATHIQSLGFFATHYASLGLSFKGHPQVKPMKMSILVDDETRN- 1069
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY+L G S+G+ VA M G+P ++V+ A AA
Sbjct: 1070 ------VTFLYKLVPGQSEGSFGMHVASMCGIPSEIVDNAQVAA 1107
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/443 (32%), Positives = 218/443 (49%), Gaps = 53/443 (11%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
++ WL K DA R P DP YD RTL+IP A K +A +KQYW +KS+ D ++FFK
Sbjct: 217 RYHWLVNEK--DAQGRAPTDPEYDPRTLHIPSSAWGKFTAFEKQYWEIKSKMWDCVVFFK 274
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA + + DWK+ G + G+ E + + + GYKV +++Q
Sbjct: 275 KGKFYELYEKDAFLANSLFDWKLAGGGRANMQLAGVPEMSFEYWASQFIQYGYKVAKVDQ 334
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE----------- 398
E+ + R + ++ R+L V+T T DG + A LA++E
Sbjct: 335 KESMLAKEMREGSKGIVKRELECVLTSGTLTDGDMLHSDLATFCLAVREEPRDFYIDEQT 394
Query: 399 ----GNCGPDN-GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
+ GP + G ++G AF+D + + + DD+ C L ++ QV PKE+I E
Sbjct: 395 TFTTDSTGPSSIGKKLFGIAFIDTSTGELQLLEFEDDSECTKLDTIMSQVKPKEIIMEKN 454
Query: 454 GLCKEAQKALRKFSAGSAAL--ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKAL 511
L A K + KF+A A+ + P +F + +L+ N YF S W + L
Sbjct: 455 NLSSLANKIV-KFNAAPNAIFNNIKPDQEFYNFEKTYD--ELITGN-YFEDESK-WPETL 509
Query: 512 ENVMQH--DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVY--RDCLRMDGQTL---- 562
+N + IGFS GGL+ +L L LD +++ G+I Y ++ L +DG TL
Sbjct: 510 KNYYKEGKKIGFSTFGGLLYYLKWLKLDQNLISLGNIKEYNPIESQNSLILDGVTLQNLE 569
Query: 563 ----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
+ +T GKR+++ W+ HPL + I RLD +E LM N E+
Sbjct: 570 IFSNSFDGTDKGTLFKLFNRAITPMGKRMMKKWLMHPLLHKKDIEKRLDSIETLMNNVEL 629
Query: 607 VMVVAQYLRKLPDLERLLGRVKA 629
+ KLPD+ER+L R+ +
Sbjct: 630 RDTIESTFTKLPDVERMLARIHS 652
>gi|395324921|gb|EJF57352.1| DNA mismatch repair protein Msh6 [Dichomitus squalens LYAD-421 SS1]
Length = 1291
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 224/471 (47%), Gaps = 65/471 (13%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD + RP +P YD RTLYIP A + + +KQ+W +K + D +LFF+ GKF ELYE
Sbjct: 336 VRDKDGVRPGEPGYDPRTLYIPKSAWNEFTPFEKQFWEIKQNHFDTILFFQKGKFLELYE 395
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T K VG+ E + K + +GYKVGR++Q ET+ A+
Sbjct: 396 EDARIGHQEFDLKLTQR--VKMSMVGVPEMSFNFWAAKFLGKGYKVGRVDQAETALGAEM 453
Query: 362 R---------------HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIK-EGNCGP 403
R + ++ R+L V T T VD + D A H ++I+ E +
Sbjct: 454 RLAADKKSKKPPAADKGKDKIVRRELNKVFTNGTLVDAELLTDDQAGHCVSIREEEDAES 513
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+G +G +D A + DD L ++ Q+ PKE+I+ L + L
Sbjct: 514 KDGKQTFGICVLDSATSEFNLSAFEDDICRTKLETMMRQLRPKEIIFTKGNLSVSTTRLL 573
Query: 464 RKFSAGS---AALELTPAMAVTDFLDASEVKKLVQLNG--------YFNGSSSPWSKALE 512
+ G+ +L + D + E+KKL +G +G SS + +
Sbjct: 574 KSILPGNCLWTSLRDVEGLKFQDTI--KELKKLYPASGDDDDEMADNPHGLSSAVPEPIR 631
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQTL------- 562
++ H ALG +I +L+ L +D D+L + Y R L +DGQTL
Sbjct: 632 RMLPHRAAIEALGSMIWYLNTLNIDKDILSMKNFNIYDPMRRGQGLVLDGQTLAHIEVLQ 691
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L C+T SGKRL R W+C PL++V+ IN RLD V+ L+ +
Sbjct: 692 NSEGTEEGTLLKLLSRCITPSGKRLFRIWLCMPLREVKDINARLDAVQDLLDHPTFEAQF 751
Query: 611 AQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL 661
A + LPDLER++ +R+ A +C V + KVL F +L KGL
Sbjct: 752 ASIAKGLPDLERIV----SRIHAKNCKVKDFL--KVL----TAFKNLSKGL 792
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 163/327 (49%), Gaps = 35/327 (10%)
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPL 772
D++N + DA+ S W I +S +D L S A +S A+ P
Sbjct: 943 DFKNRLFAEFDADR------------SVWLRAIRVLSELDCLFSLA----KASSALGEPA 986
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG--GLPVPNDILLGEDSDDCLPRTLLL 830
P+ V D + L HP + + G +PND+ LG D + R LL
Sbjct: 987 CRPE----LVEGDEA--FIDFTELRHPALVAGSSLRGDFIPNDVKLGGD----VGRIALL 1036
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNMGGKST +R T +I+AQLG VP + L D+I TR+GA D + + STF V
Sbjct: 1037 TGPNMGGKSTAMRMTATGIIMAQLGMLVPAKRARLCPVDSILTRMGAYDNMFSNASTFKV 1096
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E E +L+ AT S VILDELGRGTST+DG AIA AV QL FATHY L
Sbjct: 1097 ELDECCKILRDATPKSFVILDELGRGTSTYDGMAIAGAVLHQLATHTLSLSFFATHYGSL 1156
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
T ++A HP+V HM +ELVFLY+L GA S+G VA +AGVP
Sbjct: 1157 TDDYAYHPNVRNMHMETLVDDEK-------RELVFLYKLVDGAAGSSFGTHVANLAGVPL 1209
Query: 1011 KVVEAASHAALAMKKSIGESFKSSEQR 1037
+VVE A + K E + + +
Sbjct: 1210 EVVERAEVVSKDFAKHFKEKLEGKKTK 1236
>gi|402222110|gb|EJU02177.1| hypothetical protein DACRYDRAFT_21918 [Dacryopinax sp. DJM-731 SS1]
Length = 975
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 148/442 (33%), Positives = 213/442 (48%), Gaps = 56/442 (12%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
FE+L + D +RP + YD RT++IP A + +KQ+W +K + D +L F+
Sbjct: 46 FEFL--KDVHDKTGKRPGEDGYDPRTIFIPKNAWASFTPFEKQFWEIKQNHYDTVLMFQK 103
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELYE DAEIGH+E D K+T K + VG+ ES + K +A+GYKVGR++Q+
Sbjct: 104 GKFYELYEQDAEIGHREFDLKLT--DRVKMKMVGVPESSFNFWAAKFLAKGYKVGRVDQV 161
Query: 354 ET---SEQAKARHTNS-------VISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNC 401
ET +E A+H NS ++ R+L V+T T VD + D A H ++IKEG
Sbjct: 162 ETQLGAEMRVAKHGNSSGGSGKEIVRRELNKVLTNGTLVDPELMVDDEAGHCVSIKEGK- 220
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
+ +G +D A + DDA L ++ Q+ PKEV++ L +
Sbjct: 221 -----NNTFGICTLDAATGEFNLCCFEDDACKTRLETVMRQLRPKEVVHCTDNLSISTIR 275
Query: 462 ALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP---------WSKAL 511
LR GS L P++ + + +LV L SS A+
Sbjct: 276 LLRTVVPGSCLWTALKPSLESWSY--ERTLDELVNLYPATQNDSSSVIQGRDLSGLPPAI 333
Query: 512 ENVMQHDIGFSALGGLISHLSRLMLDD---VLRNGDILPYKVYRDCLRMDGQTL------ 562
V+ ALGG+I +L +L + +RN +I L +DGQTL
Sbjct: 334 RTVVTEVTAVEALGGMIWYLGQLNVGKDLLTMRNFNIYDPMRRGMGLVLDGQTLAHIEVL 393
Query: 563 -------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
L+ CVT GKRL R W+C PL++V+ IN RLD V+ LM
Sbjct: 394 VNSESTDEGTLLNLLNRCVTPFGKRLFRIWLCMPLREVKAINARLDAVDDLMSRPSFEAT 453
Query: 610 VAQYLRKLPDLERLLGRVKARV 631
+ R LPDLER++ RV AR
Sbjct: 454 FGKLSRGLPDLERMVSRVHART 475
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 162/314 (51%), Gaps = 29/314 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L F + W + ++ +D L S A SS A+ P PQ V DN
Sbjct: 648 LFNEFDQDRDIWLRAVRVVAELDCLFSLA----KSSQALGEPSCRPQ----FVESDNA-- 697
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
L + L HP L + +PND+ LG D + + +LLTGPNMGGKSTL+R T V
Sbjct: 698 FLDFQQLRHPAFLTDRPF--IPNDVKLGGDKE----KIMLLTGPNMGGKSTLMRMTAAGV 751
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQLG +VP L+ D I TR+GA D + T STF VE E +L+ AT SLVI
Sbjct: 752 IMAQLGMYVPAAFAKLAPVDAILTRMGAYDNMFTNASTFKVELDECCKILRDATPRSLVI 811
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTSTFDG AIA AV L FATHY LT++ HP++ HM
Sbjct: 812 LDELGRGTSTFDGMAIAGAVLHHLATHTLALSCFATHYSTLTEK--KHPNIRNMHMGTTV 869
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +++LVFLY+L G S+G VA +AGVP VVE A + +
Sbjct: 870 DEH-------ERQLVFLYKLIDGVATSSFGTHVASLAGVPTAVVERAEE----ISRDFAH 918
Query: 1030 SFKSSEQRSEFSSL 1043
F++ R SS+
Sbjct: 919 EFETKMARRRISSV 932
>gi|319411719|emb|CBQ73763.1| related to MSH6-DNA mismatch repair protein (N-terminal fragment)
[Sporisorium reilianum SRZ2]
Length = 1279
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 221/455 (48%), Gaps = 56/455 (12%)
Query: 221 VKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNV 280
++ ++AD + +L +RD + RP D YD RT+YIP A K + +KQ+W +
Sbjct: 332 IEEKRKKADNEEAYSFL--LDLRDKDGNRPGDVEYDSRTVYIPKSAWKDFTPFEKQFWEI 389
Query: 281 KSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKL 340
K + D +LFF+ GKFYELYE DA IGH+E D K+T K + VG+ E+ D K
Sbjct: 390 KQNHWDTVLFFQKGKFYELYEEDALIGHREFDLKLT--DRVKMKMVGVPEASFDIFAAKF 447
Query: 341 VARGYKVGRIEQLETSEQAKAR-------HTNSVISRKLVNVVTPSTTVDGTIGPDAV-- 391
+A GYKVGR++Q ET+ R + +++R+L +V+T T VD PD +
Sbjct: 448 LALGYKVGRVDQTETAVAKGMRVGERSRGGGSEIVNRELRHVLTSGTIVDAASLPDDLNS 507
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+ ++IKE NG ++G +D A + DD S L LL + KEV++E
Sbjct: 508 YCVSIKEAATPGRNGP-IFGVCTLDAATAEFNLTEFEDDESRTRLETLLRSLRLKEVLHE 566
Query: 452 NRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGS------- 503
GL + LR +A L P + +FL+ L +LN FN +
Sbjct: 567 KGGLSAPTLRVLRSTVPSTAQTTMLKPGV---EFLEPETT--LRKLNALFNPNVDAEARL 621
Query: 504 -------SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRD 553
S + + +++ SALGG++ +L++L LD L RN +I
Sbjct: 622 ESLDPVDPSLLPEGIASMVDRPGAMSALGGMLCYLAQLNLDRDLCSSRNFNIFDPLRQDK 681
Query: 554 CLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
CL +D Q+L L+ CVT SGKRL + W+ PL + I R
Sbjct: 682 CLVLDAQSLTHLNVLQNDEGTDEGTLHRLLNRCVTPSGKRLFKIWLVAPLATADAIRARQ 741
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
D VE L+KN + + LPD+ER++ RV+A
Sbjct: 742 DAVEDLLKNPCFGDEFETFGKALPDIERIVPRVRA 776
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 177/328 (53%), Gaps = 26/328 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L F E++ + + + ++ ID L S A +S A+ P P+ D+
Sbjct: 951 LFASFSEQSDVFLQAVKTVAEIDCLLSLA----KASYAIGEPSCRPE------LVDHETA 1000
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+L+ + L HP G+N +PNDI LG ++D+ + +LTG NM GKST R + AV
Sbjct: 1001 LLEFEELRHPCIAGDNVDF-IPNDIRLGGENDEVV----ILTGGNMAGKSTTARTSATAV 1055
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
ILAQLGC VP LS D + +R+GA D+I STF+VE ET+ ++ + T SLVI
Sbjct: 1056 ILAQLGCRVPASRARLSPVDRVASRMGANDQIFRNNSTFMVEMLETSRIINECTPRSLVI 1115
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGTSTFDG AIA+AV LV R C F THY L +F S+ V+ +HM
Sbjct: 1116 MDELGRGTSTFDGQAIAFAVLHHLVSRTRCLTFFLTHYTNLAYDFDSYSRVSNKHMQVLV 1175
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+E++F YRL G SYG QVA +AGVP ++ + A+ + K E
Sbjct: 1176 -------DDAKREVIFTYRLVDGIAESSYGTQVAALAGVPLEICDRAA----VVSKQFAE 1224
Query: 1030 SFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ K+S+ S++ L V++ ++
Sbjct: 1225 ATKASQAEKNKSAIPLALLSDFVHLFKL 1252
>gi|145539700|ref|XP_001455540.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423348|emb|CAK88143.1| unnamed protein product [Paramecium tetraurelia]
Length = 1106
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 171/320 (53%), Gaps = 29/320 (9%)
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
+ + + F S W +I ++ +D L S +V S G M P +
Sbjct: 813 NFIFKHFQSNQSVWDTLIKILNELDALCSLSVFGDTSEGKMTMPTF-----------NTE 861
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L IK HP N V N I +GE L + LLTGPNMGGKST LR C+
Sbjct: 862 KTKLVIKEGKHPCLSNINF---VSNSIDMGEK----LCKFQLLTGPNMGGKSTTLRMVCV 914
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
ILAQLGC VPCE LS D IFTR+GA D +M G+STF VE ET L+ T++SL
Sbjct: 915 LAILAQLGCSVPCEEMELSPIDRIFTRIGAKDYLMEGKSTFYVELEETLIPLKYGTKNSL 974
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
I DELGRGTST+DG AIA AV L++ I CR+LFATH+ L +E VT HMAC
Sbjct: 975 FITDELGRGTSTYDGVAIASAVMHYLIKTIQCRVLFATHFRILVEEAKLISEVTNVHMAC 1034
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ D +++FLYRL GAC S+G+ VA + G+ ++ A A + +
Sbjct: 1035 YIQ---------DGKVIFLYRLKEGACEASFGINVAKVVGIENSIITRAEDMANFFENKV 1085
Query: 1028 GESFKSSEQRSEFSSLHEEW 1047
++ + + Q+ F+ + +E+
Sbjct: 1086 QKNTEQTLQK--FNQIMKEY 1103
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 145/536 (27%), Positives = 234/536 (43%), Gaps = 79/536 (14%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQY 284
EE D T K W RD + + D TL IP K++ +QYW KS+
Sbjct: 185 EEFDDVTPK--WASIGLSRDKSGKLHGTSDADPTTLLIPQSDFNKLTKCMQQYWKYKSEN 242
Query: 285 MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
D ++FFK+GKFYEL+ DA IG+K LD L+ +G+ G E + L+ G
Sbjct: 243 FDKIIFFKLGKFYELFYEDAYIGNKYLD----LNWMGRKMHTGFPEKAVHKYKALLLEYG 298
Query: 345 YKVGRIEQLETSEQAKAR----------HTNSVISRKLVNVVTPSTTV----DGTIGPDA 390
YKV ++Q ET EQ R +T+ ++ R++ ++T T + + + D
Sbjct: 299 YKVVIVDQTETPEQMNQRVTQNKKTGQGNTDKIVQRQISEILTKGTYLYEEGESQMNLDE 358
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTI-NDDASCAALGALLMQVSPKEVI 449
LL I++ N YG A ++ + + I N D + +L LL+ + P E +
Sbjct: 359 KVLLVIRKKIIS--NAIEEYGIAILERQTNTISLAFIENRDKNYESLKTLLLHMRPVETV 416
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLVQLNGYFNGSS 504
+ L + + K GS +V L AS E K L +L Y+
Sbjct: 417 IDQHNL--PSHDPITKMIGGSV------IQSVISHLTASQDNWDEKKALFRLEQYYQNEF 468
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSR-LMLDDVLRNGDILPYKVYRD------CLRM 557
P K +N + + AL GL ++L+ L+LD VL +K+Y + C+ +
Sbjct: 469 PPAIKFYKN---NQVVLQALNGLFTYLNYILILDKVL---GCARFKIYNEVFSLQQCMIL 522
Query: 558 DGQTLY---------------------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
D Q +Y L+ VT G RLLR W+C PL V+ I R +
Sbjct: 523 DSQAIYHLEILQTTNSVDKKDYSLFGVLNKTVTPGGHRLLRRWVCAPLYQVDQIRERQAM 582
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV-KARVQASSCIVLPLIGKKVLKQQVKVFG 655
V + + + Q +++ PD ER R+ + +++ S V + + +Q++K F
Sbjct: 583 VCDISNFRKERDLFRQSIKQFPDFERRCSRIYEYSIKSESKAVF---YENLSEQRLKEFK 639
Query: 656 SLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGL----DKFLTQFEAAI 707
SL L++A + + L + I R+ K F+ + GL + L +FE I
Sbjct: 640 SLTSTLKLAQEEITLFG-QLQINFKSERLRKMMTFEANGGLLPNVQEQLNEFEQYI 694
>gi|308485160|ref|XP_003104779.1| CRE-MSH-2 protein [Caenorhabditis remanei]
gi|308257477|gb|EFP01430.1| CRE-MSH-2 protein [Caenorhabditis remanei]
Length = 856
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 175/302 (57%), Gaps = 30/302 (9%)
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
+I + KA ++ +I A I+ +DV S A +SMSSG RP +LP
Sbjct: 556 VITMLCNKAEEFIPLIPAMAQLIATLDVFVSLATFSSMSSGIYSRPELLPL--------- 606
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G +L++K HP + +PND++L ++ R ++LTG NMGGKST LR+
Sbjct: 607 -GSKLLELKQCRHPVIESISEKPFIPNDVILEKN------RLIILTGANMGGKSTYLRSA 659
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L+++LAQ+GCFVPC +S+ D IFTR+GA+D+ G STF+ E + +++LQ+AT++
Sbjct: 660 ALSILLAQIGCFVPCSSAKISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATEN 719
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
S V++DELGRGTSTFDG+ IA A+ + ++ RI C +FATH+H + K A P M
Sbjct: 720 SFVVIDELGRGTSTFDGFGIASAIAQDILNRIRCLSVFATHFHEMGK-LAEQPGAVALQM 778
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+ N ++ LY+++ G S+GL+VA M G+ + V+ AS ++K
Sbjct: 779 GVQIEKN---------QIHMLYKVSEGVAQCSFGLKVAKMVGLDESVINKASELLEGLEK 829
Query: 1026 SI 1027
+
Sbjct: 830 KV 831
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKL 617
TLY L+ C T G++LLR W+ PL ++ IN RLDVVE L+ N V + +L ++
Sbjct: 305 TLYNVLNKCKTLPGEKLLRDWLSRPLCSIDHINERLDVVESLLGNQNVRQKLRDSFLARM 364
Query: 618 PDLERLLGRV 627
PD +L R+
Sbjct: 365 PDCSQLARRL 374
>gi|358054512|dbj|GAA99438.1| hypothetical protein E5Q_06137 [Mixia osmundae IAM 14324]
Length = 1242
Score = 206 bits (523), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 214/433 (49%), Gaps = 52/433 (12%)
Query: 234 FEWL-DPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
FE+L DP RDAN+ RP YD TLY+P +A++ ++ ++Q+W +K + D +LFF+
Sbjct: 318 FEFLVDP---RDANKNRPGHADYDPSTLYVPTKAMENLTQFEQQFWEIKKNHFDTVLFFQ 374
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKFYELYE DA IGH E K+T V C VG+ E+ D K +A+GYKVGR++Q
Sbjct: 375 KGKFYELYENDARIGHSEFGLKLT-DRVKMC-MVGVPEATFDFWAAKFLAQGYKVGRVDQ 432
Query: 353 LETSEQAKARHTNS-----------VISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEG 399
ET+ + RH ++ ++ R+L V+T T VD + D + H +AI+E
Sbjct: 433 AETAIGMEMRHKDAKSAGEKASSKKIVQRELNCVLTSGTIVDERMLSDDLSQHCIAIREY 492
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+ +G +D + + DD L L + P+E+++E L +
Sbjct: 493 TPS-SSARPQFGLCVLDASTAEFRIIAFADDICRTKLETTLRLLRPRELVHERVNLSQAT 551
Query: 460 QKALRKFSAGSAALELT-PAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD 518
+ LR L+ T A+ DF D ++ F + + + ++
Sbjct: 552 TRILRNV----LPLQCTWNALKAADFADGKG-----DIHRIFAAVNRAVPAPITQIYDNE 602
Query: 519 IGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLRM--DGQTL------------- 562
SALGGLI++L L LD D++ G+ + R RM DGQTL
Sbjct: 603 QAMSALGGLIAYLRSLNLDKDLVTTGNFQLFDPVRSGERMVLDGQTLAHLEVLQNSQGGS 662
Query: 563 ------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
L CVT G R+L+ W+C PL+ IN RL++V L+++++ + +
Sbjct: 663 EGTLISLLSRCVTPFGTRMLKGWVCQPLRAASAINARLEIVACLIEHADFANTFEKATKT 722
Query: 617 LPDLERLLGRVKA 629
+PDLERL+ R+ A
Sbjct: 723 MPDLERLISRIHA 735
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/276 (40%), Positives = 149/276 (53%), Gaps = 22/276 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + + I+ ID L S A +++ RP+I+ D+ + + L HP
Sbjct: 918 WLQAVKLIAEIDCLLSLAKSSAALGEPSCRPVIV----------DSDRASVDFENLRHPC 967
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+PND+ LG + T+L+TG N GKSTLLR+ +A I+AQ+GCFVP
Sbjct: 968 IFASTPDF-IPNDVQLGASAKS----TMLVTGANASGKSTLLRSVAIATIMAQIGCFVPA 1022
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
LS DTI TR+GA D+I STF VE +T +L A+ SLVILDELGRGT +
Sbjct: 1023 SAAKLSPVDTILTRMGAQDQIYANASTFKVEMDDTKKILSDASMSSLVILDELGRGTESG 1082
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DGYAIA+A L R NC FATH+ L +FA H + MA N+
Sbjct: 1083 DGYAIAFATLHALATRNNCIGFFATHFTSLVSDFAYHTQIRPCCMATEMNDNT------- 1135
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+E+ FLYRL GA +SYG VA MAG+P +VE A
Sbjct: 1136 REVTFLYRLVDGATTKSYGPNVAKMAGIPSDLVERA 1171
>gi|339261468|ref|XP_003367889.1| DNA mismatch repair protein Msh6 [Trichinella spiralis]
gi|316964160|gb|EFV49402.1| DNA mismatch repair protein Msh6 [Trichinella spiralis]
Length = 352
Score = 206 bits (523), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 165/285 (57%), Gaps = 17/285 (5%)
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
+W + I+ +DVL +FA A + R + P+ + +G L++ HP
Sbjct: 49 KWYAAVENIATLDVLLAFAQYAKCCT----REVCCPK----FIDAIDGKTFLRLDESVHP 100
Query: 800 FALG-ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
+ G + ND+L+G D + LLLTG NMGGKSTL+R ++LAQ+G +V
Sbjct: 101 CCGKIKTQGDYIANDVLIGSSESD-TGQVLLLTGANMGGKSTLMRQVGTLIVLAQIGSYV 159
Query: 859 PCEMCVLSLADTIFTRLGATDRIMT-------GESTFLVECTETASVLQKATQDSLVILD 911
P LS D IFTR+GA D ++T G+ST VE ET+++L+ AT S VI+D
Sbjct: 160 PARNFTLSPVDCIFTRIGARDSLITVVHLLFTGQSTLFVELRETSAILKHATIHSFVIID 219
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
ELGRGTST+DG AIA+A + + I CR +F+THYH L A++P + L HMAC ++
Sbjct: 220 ELGRGTSTWDGTAIAHATLQYITNHIGCRTIFSTHYHSLMDSLAANPRIRLGHMACMVEN 279
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
SE ++ +VFLY+L GACP+SYG A +AG+ V++ A
Sbjct: 280 ESEGADPTEENVVFLYKLAPGACPKSYGFNAAKLAGIHVDVIKKA 324
>gi|358331875|dbj|GAA50639.1| DNA mismatch repair protein MSH6 [Clonorchis sinensis]
Length = 503
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 175/308 (56%), Gaps = 30/308 (9%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L + F + + W + ++ D L + A +S +S RP + + N
Sbjct: 163 LQTIFASFSDHFTLWHSAMRCLAEFDCLLALANYSSNASDVTCRPEFIDLT--------N 214
Query: 787 GG--PVLKIKGLWHPFALGE-NGGLPVPNDILLG-EDSDDC--LPRTLLLTGPNMGGKST 840
G P L+I HP + +GG +PND LG DS+D +P TLL+TGPNMGGKST
Sbjct: 215 GSQQPFLEIVDGLHPCLINTFSGGDLIPNDTRLGITDSNDPGNIPLTLLVTGPNMGGKST 274
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
L+R T L VILA LGC +P C L+ D +F+RLGA+DR++ GESTF+VE ETA++L+
Sbjct: 275 LMRQTALLVILAHLGCRIPASFCRLTPVDRVFSRLGASDRLLAGESTFMVELAETAAILR 334
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFR--------QLVERINCRLLFATHYHPLTK 952
T SLV++DELGRGTST DG A+A AV QL+ + R LF+THYH L
Sbjct: 335 HCTPHSLVLMDELGRGTSTHDGAALASAVLHYLANPGADQLIGQ-GPRTLFSTHYHSLVD 393
Query: 953 EFA------SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMA 1006
E A + + L HMAC + SE G + + FLY+ GACP+SYG A +A
Sbjct: 394 EVALGGQQSAVARIGLGHMACMVEEQSEA-EAGLENITFLYKFIPGACPKSYGFNAARLA 452
Query: 1007 GVPQKVVE 1014
+P +V++
Sbjct: 453 HLPDEVIQ 460
>gi|207346749|gb|EDZ73153.1| YDR097Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 393
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 46 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 103
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 104 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 159
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 160 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 219
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 220 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 276
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 277 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 314
>gi|84999622|ref|XP_954532.1| DNA mismatch repair protein, MutS family [Theileria annulata]
gi|65305530|emb|CAI73855.1| DNA mismatch repair protein, MutS family, putative [Theileria
annulata]
Length = 1279
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 172/297 (57%), Gaps = 28/297 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
++ F + ++ ++I + D L S A A S M RP ILP+S N +D+ P
Sbjct: 911 IVSKFHSNSFKFCKLIEIAAQFDCLTSLATVAKNSPFPMSRPKILPKSYNTLRVKDSVYP 970
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ I + F +PN + +GE D + L++TGPNMGGKSTLLR L +
Sbjct: 971 IFNISN--NKF---------IPNSVNIGEGLDGPI---LIITGPNMGGKSTLLRQIALTI 1016
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+ Q+G FV C S+AD+IFTRLGA+D I+ G+STFLVE + +S+L KAT SL +
Sbjct: 1017 IMGQIGSFVSSVECEFSIADSIFTRLGASDNILQGKSTFLVELQDISSILSKATSSSLAL 1076
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGTSTFDG AIA A + + +I CR +F TH+ + + +V++ HMA
Sbjct: 1077 IDELGRGTSTFDGTAIAVATLEK-ISKIGCRCVFTTHFQDVCVFAETLSNVSMFHMA--- 1132
Query: 970 KSNSENYSKGDQE---LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
+K D+E + FLY+L G CP+S+G+ VA +A +P +++ A A + +
Sbjct: 1133 -------AKVDEETRSVEFLYKLVPGVCPDSHGMHVAKLARIPDHIIQNAKKARVRL 1182
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/447 (26%), Positives = 196/447 (43%), Gaps = 80/447 (17%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK--------KMSASQKQYWNVKSQYMDV 287
WL+P ++DA RRP YD TL+IPP + + +Q+W VK + D
Sbjct: 263 WLEPRNLKDAEGRRPLAEGYDTTTLWIPPRGHRWAYEFRSGHYTECMQQWWEVKKTHFDS 322
Query: 288 LLFFKVGKFYELYELDAEI--GHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345
L+FFK+GKFYEL+ DA + G L W G VG E I V G+
Sbjct: 323 LVFFKMGKFYELFYQDACVVQGLTGLRWM----GAETKPHVGFPEKSIHFYASACVNAGH 378
Query: 346 KVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPST-TVDGTIGPDAVHLLAIKEG 399
+V +EQ ET +Q R+ + + R + +++TP T + + + LL +
Sbjct: 379 RVVVVEQTETPQQLDKRNKALGTSARAVKRDVCDIITPGTVSAPEMLTTQSRPLLIMSLT 438
Query: 400 NCGPD------------------NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
P+ +G+ + +D + ++ GT+ + +L+
Sbjct: 439 QSQPESQTQSQVSTAPESEPSISDGNAIVSIVCLDVSMSKIRFGTVKYTDDLLQVKTVLI 498
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA-VTDFLDASEVKKLVQLNGYF 500
P EV+ ++ K K L K A++ P A +T + ++ + L+
Sbjct: 499 HFCPAEVVLDSVLFNK---KDLIK------AIKALPYSAEITSHISQNKSRNLL------ 543
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR-DCLRMDG 559
N W +A+ N +AL S+L+ ++LD ++ P+ + + + MD
Sbjct: 544 NRVKDRW-EAVANECS-----TALLLTESYLTVVLLDKIVEYCYFEPFNFAQLEVMSMDY 597
Query: 560 QTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L YL+ T+ G+RLLR W+ +PL DV+ IN R + VE+L
Sbjct: 598 SALVHLELFVTQEGTEKNSLFHYLNHTKTAFGERLLRYWLLNPLTDVDSINLRSEAVEFL 657
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
++N +V + Q L + PDLER LG++
Sbjct: 658 VQNYPLVTTLNQELERFPDLERALGKI 684
>gi|401626342|gb|EJS44294.1| msh6p [Saccharomyces arboricola H-6]
Length = 1247
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 153/284 (53%), Gaps = 15/284 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S W I AIS ID L S T+ RP I+ + + NG L K L H
Sbjct: 898 SIWMPTIQAISNIDCLLSITRTSESLGAPSCRPTIIDEVDPKTNAKLNG--YLNFKSLRH 955
Query: 799 P-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
P F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQLGC
Sbjct: 956 PCFNLGATTARDFIPNDIELGKEQ----PRLGLLTGANAAGKSTVLRMACIAVIMAQLGC 1011
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VPCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG
Sbjct: 1012 YVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRG 1071
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1072 GSSSDGFAIAESVLHHVATHIQSLGFFATHYGTLALSFKHHPQVRSLKMSILVDEVTRN- 1130
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ + +++ A AA
Sbjct: 1131 ------VTFLYKMLEGQSEGSFGMHVASMCGISKDIIDNAQIAA 1168
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 217/440 (49%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR +DP YD+RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 281 RYQWLVDE--RDAQRRPKNDPEYDQRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 338
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 339 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWASQFIQMGYKVAKVDQ 398
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN------- 400
E+ + R + ++ R+L ++T T DG + A + LAI+E GN
Sbjct: 399 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATYCLAIREEPGNYYNQTEL 458
Query: 401 ----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
+ ++G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 459 DSVTMAKKLNTKIFGAAFIDTATGELRMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 518
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ +F D+ + + + YF + + W L+N +
Sbjct: 519 TLANKIV-KFNSAPNAI-FNEVKGGGEFYDSDKTYSEIISSEYF-PTEADWPDVLKNYHE 575
Query: 517 --HDIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCLRMDGQTL--------- 562
+GFSA GGL+ +L L LD+ L +N + + ++ + +DG TL
Sbjct: 576 TGKKVGFSAFGGLLYYLKWLKLDESLISMKNIEEYNFVKSQNSMILDGITLQNLEIFSNS 635
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL + I NRLD V+ L+++ + +
Sbjct: 636 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLHKDDIENRLDSVDSLLQDIALREELE 695
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L R+ +R
Sbjct: 696 MTFSKLPDLERMLARIHSRT 715
>gi|17508445|ref|NP_491202.1| Protein MSH-2 [Caenorhabditis elegans]
gi|351060640|emb|CCD68358.1| Protein MSH-2 [Caenorhabditis elegans]
Length = 849
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 174/302 (57%), Gaps = 30/302 (9%)
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
+I + +KA ++ +I A I+ +DV S + A+ SSG RP +LP
Sbjct: 549 VISMLCKKAEEFIPLIPAMAQLIATLDVFVSLSTFAATSSGIYTRPNLLPL--------- 599
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G L++K HP G + +PND++L D C R ++LTG NMGGKST LR+
Sbjct: 600 -GSKRLELKQCRHPVIEGNSEKPFIPNDVVL----DKC--RLIILTGANMGGKSTYLRSA 652
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L+++LAQ+G FVPC +S+ D IFTR+GA+D+ G STF+ E + +++LQ+AT++
Sbjct: 653 ALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATKN 712
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
S V++DELGRGTSTFDG+ IA A+ + ++ RI C +FATH+H + K A P M
Sbjct: 713 SFVVIDELGRGTSTFDGFGIASAIAQDILNRIQCLSIFATHFHEMGK-LAEQPGAVALQM 771
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++N E+ LY++ G S+GLQVA M G+ + V+ A+ ++K
Sbjct: 772 GVQIENN---------EIHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQLLEGLEK 822
Query: 1026 SI 1027
+
Sbjct: 823 KL 824
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
TLY L+ C T G++LLR W+ PL ++ IN RLD+VE L +N Q +R
Sbjct: 298 TLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFEN--------QTIR--- 346
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHII 678
++L + AR+ S + L+ K L+ + + + + M L+ L E
Sbjct: 347 --QKLRDSILARMPDCSQLARRLMRKCTLQDLNRFYQAATLLETVEMQLIQLSEAE-QFA 403
Query: 679 PSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
PS++R+ K I + +++F + D D+
Sbjct: 404 PSINRLLKSEITEILKKVERFQVLCDEFFDFDY 436
>gi|410074455|ref|XP_003954810.1| hypothetical protein KAFR_0A02370 [Kazachstania africana CBS 2517]
gi|372461392|emb|CCF55675.1| hypothetical protein KAFR_0A02370 [Kazachstania africana CBS 2517]
Length = 1206
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/284 (40%), Positives = 156/284 (54%), Gaps = 15/284 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+ W IHAI+ +D L + T+ RP + + + NG LK K L H
Sbjct: 858 TSWMPTIHAIASVDCLIALTRTSECLGSPSCRPEFVDELDAKTGDKLNG--FLKFKSLRH 915
Query: 799 PF-ALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
PF +G +PNDI LG+D + + LLTG N GKST+LR TC+AVI+AQ+GC
Sbjct: 916 PFFNMGSTTVKEFIPNDIELGKD----VAQFGLLTGANAAGKSTVLRMTCVAVIMAQMGC 971
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
++PCE +L+ D I TRLGA D IM G+STF VE ET +L AT SL++LDELGRG
Sbjct: 972 YLPCESAILTPVDRIMTRLGANDNIMQGKSTFYVELAETKKILDMATNRSLLVLDELGRG 1031
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA +V + + FATHY L F HP V M+ + N
Sbjct: 1032 GSSSDGFAIAESVLHHVATHVQSLGFFATHYGTLGSSFKEHPQVRPLRMSIIVDEETRN- 1090
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY+L G S+G+ VA M G+P+ +V+ A AA
Sbjct: 1091 ------VTFLYKLEDGESEGSFGMHVASMCGIPKSIVDNAQVAA 1128
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 162/551 (29%), Positives = 262/551 (47%), Gaps = 74/551 (13%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL DA R P DP YD RTL+IP A K + ++QYW +KS+ D ++FFK
Sbjct: 243 RYQWL--VNETDAQGRPPTDPEYDPRTLHIPSSAWNKFTPFERQYWEIKSKMWDCVVFFK 300
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA +G+ D K+ +G + GI E + + + GYKV +++Q
Sbjct: 301 KGKFFELYEKDALLGNSLFDLKLAGNGRANMQLAGIPEMSFEYWASQFIQHGYKVAKVDQ 360
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNC----GPDN 405
E+ + R + ++ R+L V+T T DG + A + LA++E + D+
Sbjct: 361 RESMLAKEMREGSKGIVKRELECVLTSGTLTDGDMLHSDLATYCLAVREESGDFYNSFDD 420
Query: 406 GSV-----VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+V ++G +F+D A + + DD C+ L ++ Q+ PKE+I E L A
Sbjct: 421 STVNHPDKIFGISFIDTATGELQMLEFEDDNECSKLDTIMSQIRPKEIIIEKNNLSNLAN 480
Query: 461 KALRKFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ--H 517
K ++ SA +A + P +F +L+ N + S W K L+ +
Sbjct: 481 KIVKFNSAANAIFNNVKPDTEFYNF--DRTYDELISDNAKYFEDYSKWPKILKEYYEAKR 538
Query: 518 DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR--DCLRMDGQTL------------ 562
GFSA GGL+ +L L LD ++ G+I Y + + L +DG TL
Sbjct: 539 RAGFSAFGGLLYYLKWLKLDGSLISMGNIKEYNPIKSQNSLILDGVTLQNLEIFGNSCDG 598
Query: 563 --------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
L+ +T GKR++R+W+ HPL I RLD V+ LM ++E+ +
Sbjct: 599 TEKGTLFKLLNRAITPMGKRMMRTWLMHPLLQKNDIEKRLDSVDILMSDAELRDKLEVAF 658
Query: 615 RKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK- 673
KLPDLER+L R+ SS I +VK F +++G DLL + K
Sbjct: 659 SKLPDLERMLARIH-----SSTI------------KVKDFVKVIQGFEDICDLLKTISKT 701
Query: 674 --EGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAA----------IDSDFPDYQNHDVTD 721
EG + +S++ ++D + +++A+ I++DF D D+ +
Sbjct: 702 ELEGALKQYISQV-PSSLYDDVENWTNVFDRYKASEEGIIIPHRGIEADF-DKSLDDIKE 759
Query: 722 LDAETLSILIE 732
L+ E IL E
Sbjct: 760 LENELDIILNE 770
>gi|240281683|gb|EER45186.1| DNA mismatch repair protein [Ajellomyces capsulatus H143]
Length = 519
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 159/296 (53%), Gaps = 22/296 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E S F E S W + I+ +D L S A +S RP+ +
Sbjct: 182 EVASRFYARFDENYSTWLAAVRTIAQLDCLISLAKASSALGYPSCRPVFV---------- 231
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
D+ VL+ + L HP L N +PND+ LG ++ P LLTG N GKST+LR
Sbjct: 232 DDERSVLEFEELRHPCML-PNVDDFIPNDVKLGGNT----PNLNLLTGANAAGKSTILRM 286
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
TC AVI+AQ+GC+VPC+ L+ D I +RLGA D I +STF VE +ET +L +AT
Sbjct: 287 TCTAVIMAQIGCYVPCQSARLTPVDRIMSRLGANDNIFASQSTFFVELSETKKILSEATP 346
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDELGRGTS++DG A+A AV + I FATHYH L EF HP + +
Sbjct: 347 RSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYHSLASEFEGHPEIAPRR 406
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
M + + ++ + FLY+L G S+G+ A M G+P KVVE A AA
Sbjct: 407 MRI-------HVDEEERRVTFLYKLEEGIAEGSFGMHCASMCGIPNKVVERAEIAA 455
>gi|225567942|ref|ZP_03776967.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM 15053]
gi|225163230|gb|EEG75849.1| hypothetical protein CLOHYLEM_04015 [Clostridium hylemonae DSM 15053]
Length = 875
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 278/610 (45%), Gaps = 116/610 (19%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G R LR +I PL D E I RLD VE + + + +YL + DLERL
Sbjct: 290 LDKTKTAMGARTLRKYIEQPLIDKEEIERRLDAVEEFKEGAIAREEIREYLSPVYDLERL 349
Query: 624 LGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM---- 671
+ ++ + SS +LP I + + + L L DL L+
Sbjct: 350 VCKITYKSANPRDLTAFKSSLAMLPHIRCILGDMKSPLLRGLFDSLDTLEDLCSLITDAI 409
Query: 672 -------HKEGHII-----PSLSRIFKPPIFDGSDGLDKFLTQ----------------- 702
KEG II + R+ + DG + L K Q
Sbjct: 410 LEEPPIAMKEGGIIREGYNEEVDRL-RAAKSDGKEWLAKLEEQEREKTGIKNLRIRFNKV 468
Query: 703 --FEAAIDSDF----PDYQNHDVTDLDAETLSI--LIEL-----------FIEKASQWSE 743
+ + + F PDY T +AE I L EL + + + +
Sbjct: 469 FGYYLEVTNSFKNLVPDYYTRKQTLANAERYIIPELKELEDTILGAEDKLYALEYELYCQ 528
Query: 744 VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR-QDNGGPVLKIKGLWHPFAL 802
V AI+ +++R +++ + L L +N VR + N ++ IK HP
Sbjct: 529 VRDAIAA-EIVRIQTTAKAVAQIDVFTSLALVAERNNYVRPKINERGIIDIKDGRHPVVE 587
Query: 803 GENGGLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+PND+ + D+ +D R ++TGPNM GKST +R T L V+++Q+G FVP
Sbjct: 588 K-----MIPNDMFIANDTFLNDRKNRISVITGPNMAGKSTYMRQTALIVLMSQIGSFVPA 642
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ L D IFTR+GA+D + +G+STF+VE TE A++L+ AT SL+ILDE+GRGTSTF
Sbjct: 643 SSADVGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATGRSLLILDEIGRGTSTF 702
Query: 921 DGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
DG +IA+AV + + + LFATHYH LT+ +V +A K
Sbjct: 703 DGLSIAWAVIEHISNSRLLGAKTLFATHYHELTELEGKIDNVNNYCIAVK--------EK 754
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRS 1038
GD ++VFL ++ G +SYG+QVA +AGVP V+E A K I E ++ +
Sbjct: 755 GD-DIVFLRKIVKGGADKSYGIQVAKLAGVPDTVIERA--------KEIVEELSHADITA 805
Query: 1039 EFSSL----HEEWLKT-------IVNVSRVDCNSDDD----------------DAYDTLF 1071
+ HE +KT + +S D DDD DA +TL+
Sbjct: 806 RVKDIAVNGHEAKIKTKKYDEVDLAQMSLFDTVKDDDVIAEIKNLDVSNLTPIDALNTLY 865
Query: 1072 CLWHELKNSY 1081
L ++LKN +
Sbjct: 866 QLQNKLKNRW 875
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY + K +Y D +LF+++G FYE++ DA +EL+ +T G + GI
Sbjct: 3 QQYVDTKKEYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKNCGLEERAPMCGIPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
+D + +LV++GYKV EQ+E AK ++ R++V +VTP T +D
Sbjct: 63 AVDGYLNRLVSKGYKVAICEQMEDPAAAKG-----LVRREVVRIVTPGTNLD 109
>gi|326800459|ref|YP_004318278.1| DNA mismatch repair protein mutS [Sphingobacterium sp. 21]
gi|326551223|gb|ADZ79608.1| DNA mismatch repair protein mutS [Sphingobacterium sp. 21]
Length = 871
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 177/561 (31%), Positives = 268/561 (47%), Gaps = 122/561 (21%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL--------- 614
LDS + G RLL+ W+ PLKD I RL+VVEYL+K +++ + Q +
Sbjct: 295 LDSTSSPMGARLLKRWMVMPLKDKRPITERLEVVEYLLKRADLREQLTQEIKQIGDLERL 354
Query: 615 -----------RKLPDLERLL---GRVKARVQASSCIVLPLIGKKV-------------L 647
R+L L+R L GR+K + L +I +++ L
Sbjct: 355 ISKIGLQKANPRELVQLKRALQAIGRLKELTATADAQALNVIAEQLNPCKIICDRIEKEL 414
Query: 648 KQQVKVFGSLVKGLRIA------MD------------LLMLMHKEGHI--IPSL----SR 683
K + V L+KG IA +D LL + +E I IPSL +
Sbjct: 415 KSEPPVL--LIKGNVIADGVDAELDRLRKVAFGGKDYLLEIQKRESEITGIPSLKISFNN 472
Query: 684 IFKPPIFDGSDGLDKF---------LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIE-- 732
+F + + DK L E I ++ +Y+ L AE +IE
Sbjct: 473 VFGYYLEVTNAHKDKVPADWVRKQTLVNAERYITNELKEYEEQI---LGAEDKIQVIENR 529
Query: 733 LFIEKASQWSEVI-------HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L+ E + + I + IS +DVL +FA A + +P+I
Sbjct: 530 LYNELLASLLDYIKPVQLNANLISQLDVLLNFATIAHKNHYV--KPII------------ 575
Query: 786 NGGPVLKIKGLWHP-----FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
N G ++ IKG HP +GE + ND+ L DS + +++TGPNM GKS
Sbjct: 576 NDGKLIDIKGGRHPVIEKNLPIGEEY---ITNDVFLDSDSQ----QIIIITGPNMAGKSA 628
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
LLR T L V++AQ+GCFVP + + L D IFTR+GA+D + +GESTF+VE ETAS+L
Sbjct: 629 LLRQTGLIVLMAQMGCFVPAKHAEIGLVDKIFTRVGASDNLSSGESTFMVEMNETASILN 688
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHP 958
+ SL++LDE+GRGTST+DG +IA+A+ L + LFATHYH L +
Sbjct: 689 NLSDRSLILLDEIGRGTSTYDGISIAWAIAEYLHNHPSAKAKTLFATHYHELNE------ 742
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
L + K+ + + + + +++FL +L G S+G+ VA MAG+P K+V A+
Sbjct: 743 ---LTNTFNRIKNFNVSVKEVNNKIIFLRKLVPGGSEHSFGIHVAKMAGMPAKLVVRANE 799
Query: 1019 --AALAMKKSIGESFKSSEQR 1037
L +++ GE K S ++
Sbjct: 800 ILKRLEQERTGGEHIKDSMKK 820
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 19/190 (10%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
KK + +QY ++K++Y LL F+VG FYE + DA + L +T G G +
Sbjct: 8 KKETPLMQQYNSIKAKYPGALLLFRVGDFYETFGSDAVKAAEILGIVLTKRGNGSASETE 67
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-D 383
G ++ + KLV G +V +QLE + K +++ R + +VTP + D
Sbjct: 68 LAGFPHHSLETYLPKLVRAGQRVAICDQLEDPKSVK-----TIVKRGVTELVTPGVSYND 122
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
I A + LA + D ++ G +F+D + V S + LL
Sbjct: 123 NIIQQKANNYLA----SLYLDKNAI--GVSFLDISTGEFLVA----QGSGDYIDKLLQGF 172
Query: 444 SPKEVIYENR 453
P E+I R
Sbjct: 173 KPSEIILPKR 182
>gi|365761545|gb|EHN03191.1| Msh6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1247
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 119/284 (41%), Positives = 153/284 (53%), Gaps = 15/284 (5%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S W I AIS ID L S T+ RP I+ + + NG LK + L H
Sbjct: 898 SIWMPTIQAISNIDCLLSITRTSESLGTPSCRPTIVDEVDAKTNAKLNG--YLKFESLRH 955
Query: 799 P-FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
P F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC
Sbjct: 956 PCFNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGC 1011
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VPCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG
Sbjct: 1012 YVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDLATNRSLLVVDELGRG 1071
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
S+ DG+AIA V + I FATHY L F HP V M+ + N
Sbjct: 1072 GSSSDGFAIAEGVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN- 1130
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ + +++ A AA
Sbjct: 1131 ------VTFLYKMLEGQSEGSFGMHVASMCGISKDIIDNAQIAA 1168
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 214/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR +DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 281 RYQWLVDE--RDAQRRSKNDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 338
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 339 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 398
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN------- 400
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 399 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNYYNQAQL 458
Query: 401 ----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
+ ++G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 459 DSSTMAKKLNTKIFGAAFIDTATGEIQMLEFEDDSECTKLDTLMSQVKPMEVVMERNNLS 518
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV-- 514
A K + KF++ A+ A +F D+ + + + YF + W L+N
Sbjct: 519 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDSDKTYSEIISSAYF-PTEEDWPDVLKNYHD 575
Query: 515 MQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYRD--CLRMDGQTL--------- 562
M ++GFSA GGL+ +L L LD+ ++ +I Y + + +DG TL
Sbjct: 576 MGKNVGFSAFGGLLYYLKWLKLDENLISMKNIKEYNFVKSQHSMVLDGITLQNLEIFSNS 635
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I NRLD ++ L+++ + +
Sbjct: 636 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLHKNDIENRLDSIDSLLQDITLREDLE 695
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L R+ +R
Sbjct: 696 STFSKLPDLERMLARIHSRT 715
>gi|134116991|ref|XP_772722.1| hypothetical protein CNBK0960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255340|gb|EAL18075.1| hypothetical protein CNBK0960 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1205
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 152/506 (30%), Positives = 239/506 (47%), Gaps = 70/506 (13%)
Query: 200 KNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRT 259
++SS L +++R + ++ E++ ++ F++L IRD RPDDP YDKR+
Sbjct: 238 ESSSFLTAAERKK--------IQAKEDKRESEQCFDFL--VNIRDKEGNRPDDPDYDKRS 287
Query: 260 LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG 319
+ IP ++ + + +KQ+W +K + D +LFF+ GKFYELYE DA IGH+E D K+T
Sbjct: 288 ILIPKKSWAEFTPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIGHQEFDLKLT--D 345
Query: 320 VGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHT-------NSVISRKL 372
K + VG+ E ++ + K + G+KVG ++Q ET+ + R ++ R+L
Sbjct: 346 RVKMKMVGVPEQSLEFWIAKFLGAGHKVGIVDQAETAIGMEMRTKAGQKTGGREIVRREL 405
Query: 373 VNVVTPSTTVDGTI--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDD 430
V T T VD D HL++IKE + P+ G +G D + + DD
Sbjct: 406 ARVFTNGTIVDSGYLNSDDPNHLVSIKESSGSPE-GISSFGICIADASTGEFSISFFEDD 464
Query: 431 ASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
L + Q+ PKE+I+ L + LR S A + F D E
Sbjct: 465 VCRTRLETMFRQIRPKELIHAKGNLSVTTTRLLRNILPSSTAWQ--------SFRDGKEF 516
Query: 491 ----KKLVQLNGYFNGSSSPWS--KALENVMQHDIGFSALGGLISHLSRLMLDDVL---R 541
L L F+ + +A+ ++ + + +LGG++ +L L LD L R
Sbjct: 517 YTAEDTLSLLPSIFSNEQGQITIPEAITSLQDNALAMESLGGMLFYLKSLNLDKDLFSQR 576
Query: 542 NGDIL-PYKVYRDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWIC 581
N +I P K ++ + +DG+TL L CV+ SGKRL + W+
Sbjct: 577 NFNIYDPIKEGKNLI-LDGKTLGHMEVLVNNEGGIEGTLAELLQRCVSPSGKRLFKVWLR 635
Query: 582 HPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPL 641
PL+D + IN RLD VE LM + Q + LPDLERL+ R+ A S +
Sbjct: 636 SPLRDADAINARLDAVEDLMNHPRFSGDFTQLCKGLPDLERLISRIHAGSVKQSDFL--- 692
Query: 642 IGKKVLKQQVKVFGSLVKGLRIAMDL 667
Q V+ F L KG+ +D+
Sbjct: 693 -------QVVESFSKLQKGIDNLIDM 711
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 147/284 (51%), Gaps = 23/284 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ F + W + I+ +D L S A +S RP + S
Sbjct: 861 LMDEFSKDRETWLITVRVIAELDCLVSLAKASSDMDEPKCRPTFVSSS----------SA 910
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L HP + + ND+ LG D PR +LLTGPNM GKSTLLR T V
Sbjct: 911 FIDFRDLRHPSMCLRSDF--ISNDVQLGGDQ----PRQVLLTGPNMAGKSTLLRMTAAGV 964
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQLGC+VP LS D I TR+GA D + STF VE E + +L++A SLVI
Sbjct: 965 IMAQLGCYVPASEARLSPVDKIQTRMGAYDNMFASASTFKVELDECSRILREAGPKSLVI 1024
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST+DG AIA AV + FATHY LT +FA HP++ HM
Sbjct: 1025 LDELGRGTSTYDGMAIAGAVLHHIATHSLPLGFFATHYGSLTDDFAYHPNIRRMHMQT-- 1082
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+ +++VFLY+L G S+G VA MAGVP VV
Sbjct: 1083 -----HVDDEQKQVVFLYKLIPGVAESSHGTHVARMAGVPLDVV 1121
>gi|330790177|ref|XP_003283174.1| hypothetical protein DICPUDRAFT_52102 [Dictyostelium purpureum]
gi|325086855|gb|EGC40238.1| hypothetical protein DICPUDRAFT_52102 [Dictyostelium purpureum]
Length = 1030
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 169/293 (57%), Gaps = 25/293 (8%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S +S +H IS +D L S A + M P + G V++ + H
Sbjct: 704 SLFSNFVHKISNLDCLFSLAKISCMDGYV-----------KPEFTSEPGIQVVEGR---H 749
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
P G VPN + L + + R +++TGPNMGGKS+ +R T L VI+AQ+GCFV
Sbjct: 750 PVVEVLLNGTYVPNSVKLSSNKE----RAMIITGPNMGGKSSFIRQTSLIVIMAQMGCFV 805
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
P + C L + D I+TR+GA D I G STF +E ET+ +L+ AT +SLVILDELGRGTS
Sbjct: 806 PAKECKLGVFDAIYTRMGAHDNIEKGSSTFFIELQETSEILKHATPNSLVILDELGRGTS 865
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ-HMACAFK---SNSE 974
T DG A+AY+ + +V+ C LF THY L + + +P++ HM K S+SE
Sbjct: 866 THDGVALAYSTLKFIVDEKKCFCLFVTHYPLLAQLESMYPNIIGNYHMGFIEKKVESDSE 925
Query: 975 NYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
N+ +++FLY+L GA SYGL VA MAG+P ++++ AS + MK++I
Sbjct: 926 NFIP---KVIFLYQLVQGAAQNSYGLNVANMAGLPNEILKIASIKSNEMKETI 975
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/461 (21%), Positives = 192/461 (41%), Gaps = 77/461 (16%)
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDW-----KITLSGVGKCRQVGI 328
++Q+ +K D +L + G Y+ + DAEI +K L+ K L+ C+++
Sbjct: 99 EQQFLAIKKDNPDTVLMVECGYKYKFFGDDAEIANKVLNIYSYVAKNFLNASIPCQRLYF 158
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTI- 386
+ +LV GYKVG +EQ ET+ +A + + RKL + T ST +D +
Sbjct: 159 H-------LRRLVLAGYKVGVVEQTETAALKAISSSKSQPFERKLTRIYTSSTFIDDEVD 211
Query: 387 ----GPDAVHLLAIKE------GNCGPDNGSV---VYGFAFVDCAALRVWVGTINDDASC 433
+L++ E G DN + F V + T D
Sbjct: 212 DSLQNSSPQYLVSFYEASTSASGTNSSDNTTPSVETISFVAVSIRTGEIIYDTFKDSIMR 271
Query: 434 AALGALLMQVSPKEVIYENRGLCKE-------------AQKALRKFSAGSAALELTPAMA 480
+ L L + P E++ L KE K L+ +S ++A
Sbjct: 272 SQLETALTHLKPSEILMPPSVLKKEKSNTSSGYKFSDLTYKCLKSYSKCNSARTQNMDNQ 331
Query: 481 VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENV--MQHDIGFSALGGLISHLSRLM-LD 537
+ D+ A L++L +++ ++ S+ L+++ + + LG L+S+L + +
Sbjct: 332 IFDYDVA-----LMKLQEFYDNNNC--SQVLDHIKSIMNKYQIICLGVLLSYLDQFIHFG 384
Query: 538 DVLR-----------NGDILPYKVYRDCLRMDGQT---------LYLDSCVTSSGKRLLR 577
+L+ N +LP+ + + ++ ++ T SG+R+
Sbjct: 385 SILKVPSNFKAFRTANHLVLPHSTITNLELLTNESDNSEKGSLIWLMNRTSTFSGRRMFT 444
Query: 578 SWICHPLKDVEGINNRLDVVEYLMK-----NSEVVMVVAQYLRKLPDLERLLGRVKARVQ 632
+W+C PL ++ I R VE L++ +++V + A + +PDL+R L RV + Q
Sbjct: 445 NWLCKPLNQLDSIKERQSAVEELVEGIKVNSNQVASITALFKSHIPDLQRNLSRVYYKNQ 504
Query: 633 ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
+ L + LK+ +++F + KG +LL + K
Sbjct: 505 CTPKEFLNTMSS--LKRILELFKEISKGYTFKSNLLNQIFK 543
>gi|366999412|ref|XP_003684442.1| hypothetical protein TPHA_0B03370 [Tetrapisispora phaffii CBS 4417]
gi|357522738|emb|CCE62008.1| hypothetical protein TPHA_0B03370 [Tetrapisispora phaffii CBS 4417]
Length = 1144
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 219/437 (50%), Gaps = 46/437 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL IRDA +R DP YD +TLYIP A K +A +KQYW +KS+ D ++FFK
Sbjct: 178 RYQWL--IDIRDAEKRPMTDPEYDPKTLYIPTSAWNKFTAFEKQYWEIKSKMWDCVVFFK 235
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA +G+ D KI G GI E D + + GYKV +++Q
Sbjct: 236 KGKFFELYEKDAILGNTLFDLKIAGGGRANMNLAGIPEMSFDHWASQFIEYGYKVAKVDQ 295
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GNC-GPDNG 406
E+ + R + ++ R+L V+T T + + A + LA++E GN D
Sbjct: 296 RESMLAKEMREGSKGIVKRELECVLTSGTLTESNMLHSDLATYCLAVREEPGNFYEADTQ 355
Query: 407 SVV----------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
++V +G +F+D A + + + DD C L L+ QV PKE+I E L
Sbjct: 356 NIVSVDSTLKNKLFGVSFIDTATGEIQLIELEDDNECTKLETLMSQVRPKEIIMEKDNLS 415
Query: 457 KEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM 515
A K ++ SA A + L DF + + L + N YF SS W L+
Sbjct: 416 NLAHKIIKFNSAPQAIMNYLKAGEEFYDFYKTHD-ELLSEENNYFKDSSE-WPAILQTYY 473
Query: 516 QH--DIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVY--RDCLRMDGQTL-------- 562
++ +GFSALGGL+ +L L LD +++ G++ Y + + L +DG TL
Sbjct: 474 KNKKQVGFSALGGLLYYLKWLKLDGNLISLGNMKEYDLVGSQKSLILDGVTLQNLEIFSN 533
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
+ +T GKR++++W+ HPL I RLD V+ L+ + E+ V
Sbjct: 534 SFDGSDKGTLFKLFNLSITPMGKRMMKNWVMHPLLQKSDIEKRLDSVDLLLSDVELRDVF 593
Query: 611 AQYLRKLPDLERLLGRV 627
+ +LPDLER+L R+
Sbjct: 594 ESHFIRLPDLERMLARI 610
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/282 (41%), Positives = 150/282 (53%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W + IS ID + + T+ RP + + + NG +K K L HP
Sbjct: 799 WKPTVTMISNIDCILALTRTSESLGYPSCRPKFVDEVDENTGNKLNG--FMKFKSLRHPC 856
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG D + R LLTG N GKST+LR +C+AVI+AQ+GC+V
Sbjct: 857 FNLGSTTVKEFIPNDIELGND----VSRVTLLTGANAAGKSTVLRMSCIAVIMAQIGCYV 912
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PC LS D I TRLGA D IM G+STF VE +ET +L AT SL++LDELGRG S
Sbjct: 913 PCGSAELSPVDRIMTRLGANDNIMQGKSTFFVELSETKKMLDLATNRSLLVLDELGRGGS 972
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA V L I FATHY L F HP V M + N
Sbjct: 973 SNDGFAIAECVLYHLATHIQSMSFFATHYAALGLNFKGHPDVRPMKMNILVDEQTRN--- 1029
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY+L +G +S+G+ VA M G+ + +V+ A AA
Sbjct: 1030 ----ITFLYQLVNGESGKSFGMHVASMCGISKTIVDEAQIAA 1067
>gi|58260898|ref|XP_567859.1| mismatch repair-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57229940|gb|AAW46342.1| mismatch repair-related protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 1205
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 153/511 (29%), Positives = 238/511 (46%), Gaps = 71/511 (13%)
Query: 195 NIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPL 254
N G + NS L + ++ ++ E++ ++ F++L IRD RPDDP
Sbjct: 234 NKGSESNSFLTAAERKK---------IQAKEDKRESEQCFDFL--VNIRDKEGNRPDDPD 282
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YDKR++ IP ++ + + +KQ+W +K + D +LFF+ GKFYELYE DA IGH+E D K
Sbjct: 283 YDKRSILIPKKSWAEFTPFEKQFWEIKQNHYDTVLFFQKGKFYELYEDDALIGHQEFDLK 342
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHT-------NSV 367
+T K + VG+ E ++ + K + G+KVG ++Q ET+ + R +
Sbjct: 343 LT--DRVKMKMVGVPEQSLEFWIAKFLGAGHKVGIVDQAETAIGMEMRTKAGQKTGGREI 400
Query: 368 ISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVG 425
+ R+L V T T VD D HL++IKE + P+ G +G D + +
Sbjct: 401 VRRELARVFTNGTIVDSGYLNSDDPNHLVSIKESSGSPE-GISSFGICIADASTGEFSIS 459
Query: 426 TINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL 485
DD L + Q+ PKE+I+ L + LR S A + F
Sbjct: 460 FFEDDVCRTRLETMFRQIRPKELIHAKGNLSVTTTRLLRNILPSSTAWQ--------SFR 511
Query: 486 DASEV----KKLVQLNGYFNGSSSPWS--KALENVMQHDIGFSALGGLISHLSRLMLDDV 539
D E L L F+ + +A+ ++ + + +LGG++ +L L LD
Sbjct: 512 DGKEFYTAEDTLNLLPSIFSNEQGQTTIPEAITSLQDNALAMESLGGMLFYLKSLNLDKD 571
Query: 540 L---RNGDIL-PYKVYRDCLRMDGQTL-------------------YLDSCVTSSGKRLL 576
L RN +I P K ++ + +DG+TL L CV+ SGKRL
Sbjct: 572 LFSQRNFNIYDPIKEGKNLI-LDGKTLGHMEVLVNNEGGIEGTLAELLQRCVSPSGKRLF 630
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC 636
+ W+ PL+D + IN RLD VE LM + Q + LPDLERL+ R+ A S
Sbjct: 631 KVWLRSPLRDADAINARLDAVEDLMNHPRFSGDFTQLCKGLPDLERLISRIHAGSVKQSD 690
Query: 637 IVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL 667
+ Q V+ F L KG+ +D+
Sbjct: 691 FL----------QVVESFSKLQKGIDNLIDM 711
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 147/284 (51%), Gaps = 23/284 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ F + W + I+ +D L S A +S RP + S
Sbjct: 861 LMDEFSKDRETWLITVRVIAELDCLVSLAKASSDMDEPKCRPTFVSSS----------SA 910
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L HP + + ND+ LG D PR +LLTGPNM GKSTLLR T V
Sbjct: 911 FIDFRDLRHPSMCLRSDF--ISNDVQLGGDQ----PRQVLLTGPNMAGKSTLLRMTAAGV 964
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQLGC+VP LS D I TR+GA D + STF VE E + +L++A SLVI
Sbjct: 965 IMAQLGCYVPASEARLSPVDKIQTRMGAYDNMFASASTFKVELDECSRILREAGPKSLVI 1024
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST+DG AIA AV + FATHY LT +FA HP++ HM
Sbjct: 1025 LDELGRGTSTYDGMAIAGAVLHHIATHSLPLGFFATHYGSLTDDFAYHPNIRRMHMQT-- 1082
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
+ +++VFLY+L G S+G VA MAGVP VV
Sbjct: 1083 -----HVDDEQKQVVFLYKLIPGVAESSHGTHVARMAGVPLDVV 1121
>gi|145479585|ref|XP_001425815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392887|emb|CAK58417.1| unnamed protein product [Paramecium tetraurelia]
Length = 1108
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 169/307 (55%), Gaps = 29/307 (9%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W +I ++ +D L S +V S G M +P+ ++ L IK HP
Sbjct: 825 WDSLIKILNELDALCSLSVYGDTSEGKM----TVPKFTTDKIK-------LVIKEGKHPC 873
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
N V N I +GE L + LLTGPNMGGKST LR C+ +LAQ+GC VPC
Sbjct: 874 LTNINF---VSNSIDMGEK----LTKFQLLTGPNMGGKSTTLRMVCILAVLAQIGCSVPC 926
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
E LS D IFTR+GA D +M G+STF VE ET L+ T++SL I DELGRGTST+
Sbjct: 927 EEMELSPIDRIFTRIGAKDYLMEGKSTFYVELEETLIPLKYGTKNSLFITDELGRGTSTY 986
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG AIA AV L++ I CR+LFATH+ L +E VT HMAC + SN
Sbjct: 987 DGVAIASAVMHYLIKTIQCRVLFATHFRILIEEAKLISEVTNVHMAC-YISNG------- 1038
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEF 1040
+++FLYRL GAC S+G+ VA + G+ ++ A A + + ++ + + Q+ F
Sbjct: 1039 -KVIFLYRLKEGACEASFGINVAKVVGIEDSIIMKAEEMANFFENKVQKNTEQTLQK--F 1095
Query: 1041 SSLHEEW 1047
+ + E+
Sbjct: 1096 NQIINEY 1102
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 131/494 (26%), Positives = 220/494 (44%), Gaps = 65/494 (13%)
Query: 223 NCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKS 282
N EE D + +W RD + + D TL+IP K++ +Q+W KS
Sbjct: 181 NVHEEFDDVTP-QWATIGSSRDKSGKLHGTSDADPTTLFIPQNEFNKLTKCMQQFWKYKS 239
Query: 283 QYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVA 342
+ D ++FFK+GKFYEL+ DA IG+K LD L+ +G+ G E + L+
Sbjct: 240 ENFDKIIFFKLGKFYELFYEDAYIGNKYLD----LNWMGRKMHTGFPEKAVHKYKALLLE 295
Query: 343 RGYKVGRIEQLETSEQAKAR----------HTNSVISRKLVNVVTPSTTV----DGTIGP 388
GYKV ++Q ET EQ R +T+ ++ R + ++T T + + +
Sbjct: 296 YGYKVVIVDQTETPEQMNQRVAQNKKAGVGNTDKIVQRSVSEILTKGTYLYEEGESQMNL 355
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTI-NDDASCAALGALLMQVSPKE 447
D LL I++ N YG A ++ + + I N D + +L LL+ + P E
Sbjct: 356 DEKVLLVIRKKILS--NTIEEYGMAILERQTNTISLAFIENRDKNYESLKTLLLHMRPVE 413
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAM-AVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ ++ L + + K +GS + + A D D E K L +L Y+
Sbjct: 414 TVIDSNNL--PSFDPITKMISGSVIKSVISHITASKDNWD--EKKALFRLEQYYQNGLPA 469
Query: 507 WSKALENVMQHDIGFSALGGLISHLSR-LMLDDVLRNGDILPYKVY------RDCLRMDG 559
K +N + + AL GL ++L++ L+LD VL +K+Y + C+ +D
Sbjct: 470 AIKFYKN---NQVVLQALNGLFTYLNQILILDRVL---GCAQFKLYDEEFSLQQCMILDS 523
Query: 560 QTLY---------------------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
Q +Y L+ VT G RLLR W+C PL ++ I R +V
Sbjct: 524 QAIYHLEILQTTNQVDKKDFSLFGVLNKTVTPGGHRLLRRWVCAPLYQIDQIRERQTMVC 583
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRV-KARVQASSCIVLPLIGKKVLKQQVKVFGSL 657
+ + + Q +++ PD ER R+ + ++ S V + + +Q++K F +L
Sbjct: 584 DISNFRKERDLFRQSIKQFPDFERRCSRIYEYSIKTESKAVF---YENLSEQRLKEFKNL 640
Query: 658 VKGLRIAMDLLMLM 671
K LR+A + L
Sbjct: 641 TKSLRLAQQEIALF 654
>gi|336065263|ref|YP_004560121.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334295209|dbj|BAK31080.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 835
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 164/287 (57%), Gaps = 37/287 (12%)
Query: 739 SQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIK 794
SQ++ IH AI+ +D L S + ++ LP + P Q G VL IK
Sbjct: 514 SQYTSQIHNIGSAIALMDALLSLSEISA-----------LPGYQRP---QFVSGNVLDIK 559
Query: 795 GLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
HP L ++ + +D+L+ D TL+LTGPNMGGKST +R L VIL
Sbjct: 560 NGKHPVLESTLKDHQ--YIASDVLM-----DTSRNTLILTGPNMGGKSTYMRMVALNVIL 612
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+GC+VPCE LSL D IFTR+GA+D I+ G+STF+VE E + L +AT+ SLV+ D
Sbjct: 613 AQIGCYVPCETMTLSLVDQIFTRMGASDDILMGQSTFMVEMMEAQAALSRATKHSLVLFD 672
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
E+GRGTST+DG A+A A+ + I R +F+THYH L VTL+ M K+
Sbjct: 673 EIGRGTSTYDGMALAQAIIEYINNSIQSRTIFSTHYHEL---------VTLESMYDGIKN 723
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ + ++ FLY++ G +SYG+ VA +A +PQ ++E A H
Sbjct: 724 IHVEVHEENDDVTFLYKVIDGRADKSYGINVARLAHLPQSIIERAKH 770
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K D L+F+++G FYEL+ DA K LD +T GK ++ G+
Sbjct: 11 QQYMDIKKNTNDALVFYRLGDFYELFFEDAITASKVLDLVLTARSAGKDQKAPMCGVPHH 70
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
++KLVA GYKV +EQ+E ++AK ++ R +V +VTP T
Sbjct: 71 AAQGYIQKLVAAGYKVAIVEQVEDPKEAKG-----IVKRDVVEIVTPGT 114
>gi|391347199|ref|XP_003747852.1| PREDICTED: DNA mismatch repair protein Msh2-like [Metaseiulus
occidentalis]
Length = 908
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 161/531 (30%), Positives = 247/531 (46%), Gaps = 109/531 (20%)
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLE------ 621
T G+RLL WI PL D I RLD+VE+ + ++EV + + +LR+ PDL
Sbjct: 320 TPGGQRLLSEWIKQPLIDPAKIEERLDIVEFFVNSNEVRHSLHEDFLRRFPDLHIMAKKL 379
Query: 622 -----------------RLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA 664
R L V + + C L + K L+ K F V+ +
Sbjct: 380 HQKKVRLSDLYKLYTIVRSLSPVLSTLPQGECASLDDLIVKSLQGMTKDFEKYVEMIEQV 439
Query: 665 MDLLMLMHK-EGHIIPSLSRIFKP---PIFDGSDGLDKFLTQ--------------FEAA 706
+D+ K E ++PS K I D +K LT+ + A
Sbjct: 440 IDIERAESKMEFLVMPSFDEALKEINDRIVDCEKQAEKLLTKAAQTLSVEKGKVIKLDYA 499
Query: 707 IDS--------------------DFPDYQNHDVT-------DLDAETLS----------I 729
D D D +N+ V+ DL++E ++
Sbjct: 500 TDGGFVFRVSKKEYNRIKTQRAFDIADVKNNGVSFSNGELRDLNSEYVAAKSDYKTMQET 559
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L+ ++ AS +S+ ++ IS +D L AV A G RP IL Q
Sbjct: 560 LVSDIVDVASGYSDPLYQLADNISQLDALVGLAVAAV--DGNYVRPKIL---------QM 608
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
+GG + K++ + HP + + VP+D +D R +LTGPNMGGKST +RA
Sbjct: 609 SGGEI-KLENVRHPI-VAKKQSQYVPSDAHFTKDER----RFQILTGPNMGGKSTFMRAV 662
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+V++AQ+G FVPC+ +S+ D I TR+GA D I+ G STF+ E ETA +++ AT++
Sbjct: 663 ATSVVMAQIGSFVPCDEATISVRDAILTRVGAGDEIVRGVSTFMAEMLETAFIMKSATEN 722
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+++DELGRGTST+DG +A+A+ ++ +FATHYH L A P V H+
Sbjct: 723 SLIVIDELGRGTSTYDGLGLAWAISNEISTEQRSFCIFATHYHELAALEAQIPGVVNVHV 782
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ + D +V LY++ G C +S+G+Q A +A +P+ VV A
Sbjct: 783 SALAE---------DSRIVLLYKVVPGPCSQSFGVQAAELAELPKSVVSEA 824
>gi|323342238|ref|ZP_08082470.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322463350|gb|EFY08544.1| DNA mismatch repair protein MutS [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 835
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 164/287 (57%), Gaps = 37/287 (12%)
Query: 739 SQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIK 794
SQ++ IH AI+ +D L S + ++ LP + P Q G VL IK
Sbjct: 514 SQYTSQIHKIGSAIALMDALLSLSEISA-----------LPGYQRP---QFVSGNVLDIK 559
Query: 795 GLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
HP L ++ + +D+L+ D TL+LTGPNMGGKST +R L VIL
Sbjct: 560 NGKHPVLESTLKDHQ--YIASDVLM-----DTSRNTLILTGPNMGGKSTYMRMVALNVIL 612
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+GC+VPCE LSL D IFTR+GA+D I+ G+STF+VE E + L +AT+ SLV+ D
Sbjct: 613 AQIGCYVPCETMTLSLVDQIFTRMGASDDILMGQSTFMVEMMEAQAALSRATKHSLVLFD 672
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
E+GRGTST+DG A+A A+ + I R +F+THYH L VTL+ M K+
Sbjct: 673 EIGRGTSTYDGMALAQAIIEYINNSIQSRTIFSTHYHEL---------VTLESMYDGIKN 723
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ + ++ FLY++ G +SYG+ VA +A +PQ ++E A H
Sbjct: 724 IHVEVHEENDDVTFLYKVIDGRADKSYGINVARLAHLPQSIIERAKH 770
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K D L+F+++G FYEL+ DA K LD +T GK ++ G+
Sbjct: 11 QQYMDIKKNTNDALVFYRLGDFYELFFEDAITASKVLDLVLTARSAGKDQKAPMCGVPHH 70
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
++KLVA GYKV +EQ+E ++AK ++ R +V +VTP T
Sbjct: 71 AAQGYIQKLVAAGYKVAIVEQVEDPKEAKG-----IVKRDVVEIVTPGT 114
>gi|341876712|gb|EGT32647.1| hypothetical protein CAEBREN_29612 [Caenorhabditis brenneri]
Length = 867
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 174/302 (57%), Gaps = 30/302 (9%)
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
+I + +KA ++ +I A I+ +DV S + A+ SSG RP +LP
Sbjct: 567 VISMLCKKAEEFIPLIPAMSQLIATLDVFVSLSTFAASSSGIYCRPNLLPL--------- 617
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G L +K HP G + +PND++L E+ R ++LTG NMGGKST LR+
Sbjct: 618 -GSKQLNLKQCRHPVIEGNSDKPFIPNDVVLDEN------RLIVLTGANMGGKSTYLRSA 670
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L+++L+Q+G FVPC +S+ D IFTR+GA+D+ G STF+ E + +++LQ+AT++
Sbjct: 671 ALSILLSQIGSFVPCTSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATEN 730
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
S V++DELGRGTSTFDG+ IA A+ + ++ RI C +FATH+H + K V LQ M
Sbjct: 731 SFVVIDELGRGTSTFDGFGIASAIAQDILNRIKCLSIFATHFHEMGKLAEQEGAVALQ-M 789
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++N E+ LY++ G S+GLQVA M G+ + V+ AS ++K
Sbjct: 790 GVQVENN---------EINMLYKVFDGVAQCSFGLQVAKMVGIDESVINKASKLLEGLEK 840
Query: 1026 SI 1027
+
Sbjct: 841 KV 842
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKL 617
TLY ++ C T G++LLR W+ PL +++ IN RLD+VE L++N V + +L ++
Sbjct: 316 TLYNVINKCKTLPGEKLLRDWLSRPLCNIDHINERLDIVEALIENQTVRQKLRDSFLARM 375
Query: 618 PDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHI 677
PD +L R LI K L+ + + + + M L+ L E
Sbjct: 376 PDCSQLARR--------------LIRKSTLQDLNRFYQAATLLESVEMQLIQLCENE-KF 420
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
S+ R+ K + +++F + D D+
Sbjct: 421 SASIERLLKSEVTAILKKVERFQILCDEFFDFDY 454
>gi|119620613|gb|EAX00208.1| mutS homolog 6 (E. coli), isoform CRA_a [Homo sapiens]
Length = 1068
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 213/462 (46%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELG---LVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|2662381|dbj|BAA23675.1| GTBP-ALT [Homo sapiens]
gi|2696085|dbj|BAA23673.1| GTBP-ALT [Homo sapiens]
Length = 1068
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 213/462 (46%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELG---LVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>gi|449016696|dbj|BAM80098.1| mutS family DNA mismatch repair protein MSH6 [Cyanidioschyzon merolae
strain 10D]
Length = 1108
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 162/328 (49%), Gaps = 35/328 (10%)
Query: 718 DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
D+ +A+ + E F S W V + D L S A + GA P+ P
Sbjct: 789 DIETAEAQFARTVFEQFDASYSLWLSVARMLGEFDALTSLANVSF--EGAAGLPMTRPVF 846
Query: 778 KNP---AVRQDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGP 833
P A ++ L K LWHP AL VPND L D +++LTGP
Sbjct: 847 AEPLDRAASHEDVAAALCFKELWHPILALRRGPSQFVPNDFEL----DAAKHPSMVLTGP 902
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL-ADTIFTRLGATDRIMTGESTFLVEC 892
NM GKS LLR +AVILAQ+GC+VP + + D +FTR+GA DR+M +STF+VE
Sbjct: 903 NMSGKSALLRQVSIAVILAQMGCYVPASSAYIRVPVDRLFTRIGARDRVMRAQSTFMVEM 962
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952
E A VL AT SLV+LDELGRGTSTFDGYAIAY+ L R C LFATHYH L
Sbjct: 963 LEAAEVLSHATNRSLVVLDELGRGTSTFDGYAIAYSALWYLTFRTRCLTLFATHYHMLAT 1022
Query: 953 EFASHP-----------------HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACP 995
E P V HM +N+ E+ FLYRL G
Sbjct: 1023 EPLLRPAHHHHHHRSGDDDDDAVSVVFAHMGARVDTNA-------HEIAFLYRLRPGVAA 1075
Query: 996 ESYGLQVAVMAGVPQKVVEAASHAALAM 1023
S G++ A +AG+P+ V++ A A A
Sbjct: 1076 HSRGIECARLAGIPEDVIQRAEFHARAF 1103
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 147/472 (31%), Positives = 221/472 (46%), Gaps = 72/472 (15%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD+ R P DP YD T+++PPEA +KM+ Q Q+W +K Y D +L FK GKFYE Y+
Sbjct: 192 VRDSAGRSPTDPHYDPSTVFVPPEAERKMTPFQLQFWKIKRNYYDTVLLFKKGKFYECYD 251
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
+DA+IGH+ L T G R VG+ ES +LV GY+VGR+EQ+E+ AKA
Sbjct: 252 IDADIGHRVLQLNYTSIGRADMRCVGVPESAFYRHAIRLVDAGYRVGRVEQVESVLAAKA 311
Query: 362 RHTNSVISRKLVNVVTPSTTVDGT---IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
++N V R+LV ++T T VD + + +L+ + EG+ P ++ G ++ A
Sbjct: 312 -NSNKVCDRRLVKILTKGTVVDEAGDDVFEEPRYLMIVVEGDRVPGTETIPLGICYLCVA 370
Query: 419 ALRVWVGTINDDAS-CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LT 476
V +G ++ L ALL++V P+EVI + FS S LE L
Sbjct: 371 TAAVHLGVLHTSRERFTELEALLVRVRPREVILD--------------FS--SERLEFLV 414
Query: 477 PAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLML 536
+ A D + V N L + + A G S L L++
Sbjct: 415 RSCAAPDVQVHRRTLRDVPPNASLVAK-------LSAICSDVLALRACQGAASFLDELLI 467
Query: 537 -DDVLRNG------DILPYKVYR----DCLRMDGQTL---------------YLDSCVTS 570
D V G D+ P ++Y D M+G L +LD C T+
Sbjct: 468 ADQVFPLGNFYSLHDMAPTELYERLELDAAAMEGLELFRTSADFNKDGSVFGFLDRCATN 527
Query: 571 SGKRLLRSWICHPLKDVEGINNRLDVVE-------YLMKNSEVVMVVAQY-------LRK 616
G+R LR W+CHP +DV I +RLD +E L +E+ Q+ LR
Sbjct: 528 MGRRYLRRWLCHPFRDVARICDRLDAIEDIHQMLTSLSGANEMESAEEQHQQHLFSCLRS 587
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLL 668
LPD+ER L R+ A V+ +++V+ F ++ GL A++L+
Sbjct: 588 LPDIERSLVRIHALAVDRHGAVM---FDDTNQRKVRDFLRILDGLATAVELV 636
>gi|372488883|ref|YP_005028448.1| DNA mismatch repair protein MutS [Dechlorosoma suillum PS]
gi|359355436|gb|AEV26607.1| DNA mismatch repair protein MutS [Dechlorosoma suillum PS]
Length = 867
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 164/280 (58%), Gaps = 27/280 (9%)
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
Q V A++ +D+L SFA TA ++N + P L ++ HP
Sbjct: 544 QLQAVARALAQLDMLASFADTAV--------------ARNWCRPEFTDRPGLWLEAGRHP 589
Query: 800 FALGE---NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
E G +PND+ LGE S+D R LL+TGPNMGGKST +R T L +LA +GC
Sbjct: 590 VVENELQAQGDTFIPNDLDLGE-SEDAERRLLLITGPNMGGKSTYMRQTALIALLAHVGC 648
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VP + L D IFTR+GA+D + +G STF+VE TE+A++L AT+ SLV++DE+GRG
Sbjct: 649 YVPAKAARLGPMDQIFTRIGASDDLASGRSTFMVEMTESAAILHNATEQSLVLMDEVGRG 708
Query: 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENY 976
TSTFDG A+A A+ R L+E+ LFATHY LT+ +P + H+ +
Sbjct: 709 TSTFDGMALAMAILRHLLEKNRSLTLFATHYFELTRLAHEYPALVNVHL--------DAV 760
Query: 977 SKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
GD+ +VFL+ + G +SYG+QVA +AG+P VV AA
Sbjct: 761 EHGDR-IVFLHAVEEGPANQSYGIQVAALAGIPSAVVRAA 799
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 170/391 (43%), Gaps = 81/391 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +KSQ+ LLF+++G FYEL+ DAE + LD ITL+ G+ + I +G+
Sbjct: 17 QQYLALKSQHPGTLLFYRMGDFYELFFEDAEKAARLLD--ITLTTRGQSAGLPIKMAGVP 74
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAVH 392
AVE+ +A+ K+G E + EQ T+ + R + +VTP T D + +
Sbjct: 75 YHAVEQYLAKLVKMG--ESVVICEQVGDPATSKGPVERAVSRIVTPGTLTDAALLDEKRD 132
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
L + G V+G A+++ A+ V + + L A L ++ P EV+ +
Sbjct: 133 TLLM-----ALTGGRGVWGLAWLNLASGEFRVSEV----ATEKLAATLERIRPAEVLLPD 183
Query: 453 RGLCK-----------------EAQKA--LRKFSAGS----AALELTPAM----AVTDFL 485
+ + EA K L F S AA +L PA+ A+ +
Sbjct: 184 SLVPEVNISAATTRRPDWHFDAEAAKRLLLEHFKVQSLTAFAAEDLRPALGAAGALLQYA 243
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDI 545
A++ + L + G S + +G A + L L + LR G+
Sbjct: 244 QATQTQALPHVQGLMVERESAY-----------LGLDA-----ATRRNLELTETLR-GEA 286
Query: 546 LPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
P TL+ LDSC+T+ G R LR + HP +D R+D + LM +
Sbjct: 287 SP-------------TLFSLLDSCITAMGARYLRHALHHPRRDRAVPAARIDAIGALMAD 333
Query: 604 SEVVMVVAQYLRK----LPDLERLLGRVKAR 630
+ +AQYLR D+ER+ GR+ R
Sbjct: 334 H---LALAQYLRSGLKGFADVERIAGRIALR 361
>gi|227529690|ref|ZP_03959739.1| DNA mismatch repair protein MutS [Lactobacillus vaginalis ATCC 49540]
gi|227350480|gb|EEJ40771.1| DNA mismatch repair protein MutS [Lactobacillus vaginalis ATCC 49540]
Length = 877
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 178/319 (55%), Gaps = 32/319 (10%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
A+S +DVL+SFAV S H + PQ N G VLKIK HP
Sbjct: 537 QALSELDVLQSFAVV----SEDYH--FVRPQM--------NTGHVLKIKDGRHPVVEKFM 582
Query: 806 GGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
G VPND+++ E +D LL+TGPNM GKST +R L ++AQ+GCFVP E
Sbjct: 583 GHQEYVPNDVMMDESTD-----ILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPAERAE 637
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
L + D IFTR+GA D +++GESTF+VE E + L AT SL++ DE+GRGT+T+DG A
Sbjct: 638 LPIFDQIFTRIGAADDLISGESTFMVEMMEANNALMHATDRSLILFDEIGRGTATYDGMA 697
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+A A+ + E + + LF+THYH LT L+ K+ ++ + ELV
Sbjct: 698 LAQAIIEYIHEHLRAKTLFSTHYHELT---------ALETTLSRLKNVHVGATEKNGELV 748
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK---SIGESFKSSEQRSEFS 1041
FL+++++G +SYG+ VA +AG+P+ +++ A +++K + S EQ+SE S
Sbjct: 749 FLHKVSAGPADKSYGIHVAKLAGMPEDLLKRADQILSSLEKKDVKLPTIPASIEQQSEAS 808
Query: 1042 SLHEEWLKTIVNVSRVDCN 1060
+ E+ + VD N
Sbjct: 809 KVKEKTVHPATQPPLVDPN 827
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 121/477 (25%), Positives = 203/477 (42%), Gaps = 62/477 (12%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAIKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ ++ ++ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVNSYIDVLIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G + +L I N Y A+ D + + D AS + L+
Sbjct: 118 NGDQAKNNNYLAGIIRQNGH-------YYLAYTDLSTGEL---KTTDFASEDEVINELIN 167
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT----DFLDASEVKKLVQLNG 498
+ +EV+ ++ Q+ ++ S E+ V+ D D + + L
Sbjct: 168 LQSREVVLDDSVEDDFKQQLTKRNILQSHQPEIVNEAEVSYLTQDLTDEGQQAVVSLLVS 227
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDVLRNGDILPYKVYRDCLRM 557
Y + ++L + +Q I + + I H S+ L +++ N R R
Sbjct: 228 YL---LTTQKRSLAH-LQKAISYRPSSFMKIDHYSKTNL-ELMTN--------MRSGKRQ 274
Query: 558 DGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
LD T+ G RLL+ W+ PL D + I+ R D V+ L+++ + Q L K+
Sbjct: 275 GTLAWLLDETKTAMGSRLLKRWLDRPLIDPKQISARQDKVQELLEHYFERNNIQQELIKV 334
Query: 618 PDLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLM 669
DLERL GRV + +Q +S + +P I + F L K L D+
Sbjct: 335 YDLERLAGRVAYGSVNGRDLIQLKTSLLQVPKIKYTLETLDAPAFADLEKQLDPLSDVAS 394
Query: 670 LMHKEGHIIPSLSRIFKPPI--FDG---SDGLDKFLTQFEAAIDSD---FPDYQNHD 718
L+ E I+ PPI DG DG D+ L ++ A+++ D Q H+
Sbjct: 395 LI--ENSIVED------PPISVTDGGVIKDGYDQQLDEYRDAMNNGKQWIADLQKHE 443
>gi|304440469|ref|ZP_07400358.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371221|gb|EFM24838.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 864
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 169/299 (56%), Gaps = 30/299 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ--SKNPAVRQDNG 787
LIE F + S EV +S IDVL+ A A+ I P+ N + +D
Sbjct: 536 LIENFKKYTSLLLEVSEIVSRIDVLQGLA------KSAIENRFIRPELNEDNTIIIKDGR 589
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
P+++ K F +PND +L D D L ++TGPNM GKST +R L
Sbjct: 590 HPIVEFKNRDDSF---------IPNDTIL--DMDKNLIH--IITGPNMAGKSTYMRQIAL 636
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
VI+AQ+G FVP + C + + D IFTR+GA+D + GESTF+VE E A++L+ AT SL
Sbjct: 637 IVIMAQIGSFVPAKSCNIGIVDRIFTRIGASDNLSKGESTFMVEMKEVANILKNATDKSL 696
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
+ILDE+GRGTSTFDG +IA+++ + E I + +FATHYH L+K ++ +V+ ++
Sbjct: 697 IILDEVGRGTSTFDGMSIAWSIVEYISENIGAKTVFATHYHELSKIEETYKNVSNLNIKV 756
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
K +E++FL ++ G SYG+ VA +AG+ +KV + A +++K+
Sbjct: 757 ---------KKDGEEIIFLRKIVEGWTDNSYGIDVAKLAGIDEKVTKRAEEILKSLEKT 806
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 58/387 (14%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
L+K++ +QY K Y D +LF+++G FYE++ DA KELD +T G G K
Sbjct: 6 LEKVTPMMRQYLETKKNYEDAILFYRLGDFYEMFFDDAITASKELDLALTGRGGGLDDKI 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI + + KL+ +GYKV +Q+E + AK ++ R++ VVTP T D
Sbjct: 66 PMCGIPHHVFKNYLSKLIDKGYKVAICDQVEDPKLAKG-----IVKREVTKVVTPGTFTD 120
Query: 384 GTI----GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAA---LRVWVGTINDDASCAAL 436
+ + L +++ + +VD + L +N+ + +
Sbjct: 121 TDYIEAGSNNFMTSLYVRDNSV---------SITYVDYSTGMLLSTSKVFLNEGSRDEYI 171
Query: 437 GALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL 496
++ ++SPKEV+ + +A++ K + ++++ ++++
Sbjct: 172 DLIVSKISPKEVV-----INSDAERYFDK-------------SVLKNYINEKNIEEIKNK 213
Query: 497 NGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDI-LPYKVYRD-- 553
+ SS + L + + +I L +S++S+ L+ +++ DI L K+ D
Sbjct: 214 EYLKHLSSELKDELLNSKYRENISLEILLNYLSNVSKTKLNHIVKIADINLEQKMILDEN 273
Query: 554 ------------CLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
R G L LD TS G+RLLR WI PL +V+ I R D VE
Sbjct: 274 SMRNLEILKGLNSNRKSGSLLEVLDYTKTSMGQRLLRRWIEEPLLNVDEIKKRQDYVEEF 333
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ ++ V L + D+ER + ++
Sbjct: 334 KSDFILLDDVRSILSSIIDMERQMVKI 360
>gi|281210061|gb|EFA84229.1| DNA mismatch repair protein [Polysphondylium pallidum PN500]
Length = 1354
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 167/296 (56%), Gaps = 21/296 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S +S VI ++ +D L S +V + RP ++N + NG
Sbjct: 1003 FSEDYSLFSNVISKLANLDCLYSLSVVGKQAGYV--RPEF---TENSGIEIVNGR----- 1052
Query: 794 KGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
HP G VPN + L D++ R +++TGPNMGGKS+ +R T L VI+A
Sbjct: 1053 ----HPIVEHLLQGEQYVPNSVRLSPDAE----RAMIITGPNMGGKSSFIRQTSLIVIMA 1104
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+G VP C L + D I+TR+GA D I G STF VE ET+++LQ+AT SLVILDE
Sbjct: 1105 QIGSNVPAASCRLGVVDAIYTRMGAHDNIEKGSSTFFVELQETSAILQQATPRSLVILDE 1164
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF-KS 971
LGRGTST DG AIAY+ R ++E+ C LF THY PL E + T+ + F +
Sbjct: 1165 LGRGTSTHDGVAIAYSSLRYIIEKKQCFCLFVTHY-PLLAELENQYPTTVANYHMGFIEQ 1223
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
E+Y+ +++FLY++T GA SYGL VA +A +P+ V+ +S + +K SI
Sbjct: 1224 KQEDYTPAIPKVIFLYQVTKGAAKNSYGLNVARIADLPKSVLMISSAKSDELKHSI 1279
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/415 (23%), Positives = 170/415 (40%), Gaps = 58/415 (13%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-CRQVG 327
K + ++Q +K QY D +L + G ++ + DAEI + L+ S V K
Sbjct: 412 KYTPLEQQVIEIKKQYPDTVLMVECGYKFKFFGNDAEIATRVLN---IYSYVAKNFLNAS 468
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDG-- 384
+ + + +LV GYKVG +EQ+ET+ +A + + RKL + T ST +D
Sbjct: 469 VPVQRLYFHLRRLVYAGYKVGVVEQIETAALKAVSSSKSQPFERKLTRLYTASTFIDDID 528
Query: 385 -------TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
I P+ +L++ E D + F V + + T DD L
Sbjct: 529 INENDPVNISPN--YLVSFTEQYKTEDLTEI--SFVAVSISTGEIICDTFKDDVLRTHLE 584
Query: 438 ALLMQVSPKEVIY-ENRGLCKEAQKALRKFSAGSAALELT--PAMAVTDF--LDASEVKK 492
L + P EV+ R + K+ Q L L+ + + L+ V+
Sbjct: 585 TRLTHLKPTEVLLPPERTIEKQQQDTTTTTVVSPPYLYLSNLTKKCIKTYCKLNNVRVQT 644
Query: 493 LV-QLNGY---------FNGSSSPWSKALENVMQ--------HDIGFSALGGLISHLSRL 534
+ +L Y F + + L +VM +I S L I S L
Sbjct: 645 MTEELYDYDRALSSLVEFYEADKSTANTLSSVMMLPKAQVICLNIQLSYLKEFIQFTSLL 704
Query: 535 MLDD-----VLRNGDILPYKVYRDCLRMDGQ-------TLY--LDSCVTSSGKRLLRSWI 580
+ L+N ILP+ + + + +L+ L+ T +G+RL+ W+
Sbjct: 705 KVSTNFKTFTLQNHLILPHSTIENLEILKNEWDKSEKGSLFWVLNQTQTIAGRRLIVEWL 764
Query: 581 CHPLKDVEGINNRLDVVEYLMKNSEVVM--VVAQYLR-KLPDLERLLGRVKARVQ 632
C PL +E I R D V L+ +++ +++ +L+ +PDL+R L ++ + Q
Sbjct: 765 CKPLMKLELIKERQDAVNELITSTKTTSHNLISTFLKGSIPDLQRNLSKIYYQSQ 819
>gi|443897710|dbj|GAC75049.1| mismatch repair ATPase MSH6 [Pseudozyma antarctica T-34]
Length = 2956
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 142/434 (32%), Positives = 213/434 (49%), Gaps = 54/434 (12%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD + RP D YD RT++IP A K + ++Q+W +K + D +LFF+ GKFYELYE
Sbjct: 1620 LRDKDGNRPGDAEYDSRTVFIPKSAWKDFTPFEEQFWRIKQNHWDTVLFFQKGKFYELYE 1679
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T K + VG+ E+ D K +A GYKVGR++Q ET+
Sbjct: 1680 EDALIGHREFDLKLT--DRVKMKMVGVPEASFDIFAAKFLALGYKVGRVDQTETAVAKGM 1737
Query: 362 R-------HTNSVISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYGF 412
R + +++R+L +V+T T VD PD + + ++IKE NG ++G
Sbjct: 1738 RVGERSRGGGSEIVNRELRHVLTSGTIVDAASLPDDLNSYCVSIKEDASAGRNGP-LFGV 1796
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
+D + + DD S L LL + KEV++E GL + + LR +A
Sbjct: 1797 CTLDASTAEFNLTEFEDDESRTRLETLLRSLRLKEVLHEKAGLSPQTLRVLRSTVPSTAQ 1856
Query: 473 LE-LTPAMAVTDFLDASEVKKLVQLNGYFNG---------SSSPWSKAL-----ENVMQH 517
+ L P + +FL+ L +LN FN + P AL E+++
Sbjct: 1857 ITMLKPGV---EFLEPETT--LRKLNALFNPDVDAEARVETLEPVDPALLPEGIESMVDR 1911
Query: 518 DIGFSALGGLISHLSRLMLDDVL---RNGDILPYKVYRDCLRMDGQTL------------ 562
SALGG++ +L++L LD L RN +I CL +D Q+L
Sbjct: 1912 ACAMSALGGMLCYLAQLNLDRDLCSSRNFNIFDPLKQDKCLVLDAQSLTHLNVLQNDEGT 1971
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
L+ CVT GKRL + W+ PL + I R D VE L+K + +
Sbjct: 1972 EEGTLHRLLNRCVTPFGKRLFKIWLVAPLATADAIRARQDAVEDLLKYPGFGDEFETFGK 2031
Query: 616 KLPDLERLLGRVKA 629
LPD+ER++ RV+A
Sbjct: 2032 TLPDIERIVPRVRA 2045
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 26/306 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L F E++ + + + ++ +D L S A SS A+ P P+ V +
Sbjct: 2220 LFASFSEQSDVFLQAVKTVAEVDCLLSLA----KSSYAIGEPSCRPE----LVEHETA-- 2269
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+L+ + L HP GEN +PNDI LG +D+ + +LTG NM GKST R + AV
Sbjct: 2270 LLEFEELRHPCIAGENVDF-IPNDIRLGGKNDEVV----ILTGGNMAGKSTTARTSATAV 2324
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
ILAQLGC VP LS D I +R+GA D+I STF+VE E + ++ + T SLVI
Sbjct: 2325 ILAQLGCRVPAASARLSPVDRIASRMGANDQIFRNNSTFMVEMLEASRIINECTPRSLVI 2384
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGTSTFDG AIA+AV LV R C F THY L +F S+ V+ +HM
Sbjct: 2385 MDELGRGTSTFDGQAIAFAVLHHLVSRTRCLTFFLTHYTNLAYDFDSYSRVSNKHMQVLV 2444
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+E++F YRL G SYG QVA +AGVP ++ + A+ A+ K +
Sbjct: 2445 -------DDAKREVIFTYRLVDGIAESSYGTQVAALAGVPHEICDRAA----AVSKQFAD 2493
Query: 1030 SFKSSE 1035
+ K+S+
Sbjct: 2494 ATKASQ 2499
>gi|324506957|gb|ADY42957.1| DNA mismatch repair protein MSH2 [Ascaris suum]
Length = 414
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 182/319 (57%), Gaps = 18/319 (5%)
Query: 698 KFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSF 757
+F ++ A+++++ + Q + +E + ++IE A ++ ++ IDVL +F
Sbjct: 72 RFTSKALEALNNEYKELQKQYDSS-QSELIKMVIETCAGYAPALQQLSECLAVIDVLVAF 130
Query: 758 AVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLG 817
A A++S RP ++ + V + PVL+ PF +PND+L+G
Sbjct: 131 ATLATLSPFPYSRPQLIDKESRVLVLKSCRHPVLEALPEAPPF---------IPNDVLMG 181
Query: 818 EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA 877
E+ +D R LLLTG NMGGKST LR+ L V++ Q+GCFVPCE SL D I TR+G+
Sbjct: 182 ENPEDS-TRFLLLTGANMGGKSTYLRSCALCVLMGQMGCFVPCEYAKFSLIDGIHTRIGS 240
Query: 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI 937
D G STF+ E ++AS+L+ AT SLV++DELGRGTST+DG+ +A+A+ ++ RI
Sbjct: 241 CDYQCKGVSTFMAEMIDSASILEAATSKSLVVVDELGRGTSTYDGFGLAWAIADDILARI 300
Query: 938 NCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPES 997
C +FATH+H ++ +P+ L+++ E + EL+ LY++ G S
Sbjct: 301 KCLCIFATHFHEMSALHERYPN-ALRNI------RVETQIDENGELILLYKVMPGIAERS 353
Query: 998 YGLQVAVMAGVPQKVVEAA 1016
+G+ +A + G+ ++E A
Sbjct: 354 FGINIAKLVGISDDIIEEA 372
>gi|345568137|gb|EGX51038.1| hypothetical protein AOL_s00054g774 [Arthrobotrys oligospora ATCC
24927]
Length = 1161
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 163/290 (56%), Gaps = 28/290 (9%)
Query: 732 ELFIEKASQWSE---VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGG 788
+ ++ A Q+ E V+ +++ +D L S A A LP P + D
Sbjct: 853 DFMLQIAGQYQEYRDVVQSLATLDCLVSLANVAQ-----------LPGYCKPTITDDIE- 900
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+K+K HP VPNDI LG D RTLL+TGPNMGGKS+ +R L
Sbjct: 901 --IKVKQGRHPMVEQLLIETYVPNDIDLGADQR----RTLLVTGPNMGGKSSYVRQIALI 954
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+G +VP + + L D +FTR+GA D +MTGESTF+VE +ET+ +L++AT SLV
Sbjct: 955 AIMAQIGSYVPADSAKIGLLDAVFTRMGAFDNMMTGESTFMVELSETSDILKQATPRSLV 1014
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMAC 967
ILDELGRGTST DG AIAY+V +V I LF THY L + ++P V HM
Sbjct: 1015 ILDELGRGTSTHDGVAIAYSVLDYMVSSIKAMTLFVTHYPILAQMEKAYPREVVNAHMRF 1074
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
E + G +++ FLY++ G SYGL VA +A VPQ V++ A+
Sbjct: 1075 ------EEATDGSEDITFLYQIAEGTAHRSYGLNVAKLANVPQAVLDTAA 1118
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 162/401 (40%), Gaps = 74/401 (18%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEI-----------GHKELDWKIT 316
KK++ ++Q ++K +Y D +L +VG Y + DA I G + + +
Sbjct: 257 KKLTPLEQQVVDIKEKYADTVLVVEVGYKYRFFGEDARIAASVLSIVCIPGRMKFTYDPS 316
Query: 317 LSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNV 375
+ + K I + V++L+ GYKVG + QLET+ +A + N+ RKL N+
Sbjct: 317 EAHLDKFASASIPVHRLHVHVKRLITAGYKVGVVRQLETAALKAAGDNRNAPFVRKLTNL 376
Query: 376 VTPSTTVDGTIGPD--------------AVHLLAIKE---GNCGPDNGSVVYGFAFVDCA 418
T T +D G D +LL I E G G D V G V +
Sbjct: 377 YTKGTYIDDIDGVDEHDAVGAGSGGAASTGYLLCITEKLGGGAGADE-KVKVGILAVQPS 435
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA------- 471
+ +D + L+ ++P E++ G +A L AGS
Sbjct: 436 TGDIIYDEFDDGFMRTEIETRLLHIAPCELLI--LGELSKATDKLVTHLAGSTNNVFGDG 493
Query: 472 ----ALELTPAMAVTDFLDASE--VKKLVQLNGYFNGSSSPWSKALENVMQH--DIGFSA 523
+E M T + SE +KL ++ + L +++ D+
Sbjct: 494 VRVEKVERPKKMQTTSPIHVSEFYAEKL-------KSEAAALPQDLLDIVTQLPDLVTIC 546
Query: 524 LGGLISHLSRLMLDDV----------------LRNGDIL-PYKVYRDCLRMDGQ-TLY-- 563
L +I+HL+ L+ V L NG+ L ++YR+ + +L+
Sbjct: 547 LSAMITHLTAYGLEHVFDLTKYFKSFSARSHMLLNGNTLSSLEIYRNQTDFSEKGSLFWT 606
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
LD T G+RLLR W+ PL D + R++ VE ++ ++
Sbjct: 607 LDHTSTRFGRRLLRKWVGRPLLDRSQLEARINAVEEMLSST 647
>gi|452837457|gb|EME39399.1| hypothetical protein DOTSEDRAFT_83160 [Dothistroma septosporum NZE10]
Length = 1249
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 146/237 (61%), Gaps = 4/237 (1%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P + I HP G VPND+ L D+ RTLL+TGPNMGGKS+ +R+ L
Sbjct: 981 PGISIDQGRHPMVEQLLLGAFVPNDVNLKADAT----RTLLITGPNMGGKSSYVRSVALI 1036
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+G +VP E L L D +FTR+GA D +M GESTF+VE ET+ +L++AT SLV
Sbjct: 1037 AIMAQIGSYVPAESAELGLLDAVFTRMGAFDNMMKGESTFMVELGETSDILKQATPRSLV 1096
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTST DG AIA AV + +V ++ LF THY L + +P L+++
Sbjct: 1097 ILDELGRGTSTHDGVAIAQAVLQYVVSQLKSFTLFITHYQSLARVAEQYPDGELKNVHMR 1156
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
F ++ +Q++ FLY + G SYGL VA +AG+PQ ++E AS + AM++
Sbjct: 1157 FTEKESGRTESEQDVTFLYEVGEGVAHRSYGLNVARLAGLPQSLLEEASKRSKAMEE 1213
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 130/531 (24%), Positives = 216/531 (40%), Gaps = 99/531 (18%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------D 312
P KK++ ++Q ++K ++ D LL + G Y L+ DA + K L D
Sbjct: 336 PARGKKLTPMEQQIVDLKRKHPDALLVVEAGYKYRLFGEDARMAAKVLAIMCIPGKYRFD 395
Query: 313 WKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRK 371
+ + + + + V +LV+ G+KVG + QLET+ +A + + + R
Sbjct: 396 EHPSEAHMKRFASASFPTHRLHIHVRRLVSAGHKVGIVRQLETAALKAIGTNKSKIFERG 455
Query: 372 LVNVVTPSTTVDGTIG----------PDAVHLLAIKEG---NCGPDNGSVVYGFAFVDCA 418
L N+ T T +D G P HLL I E G D V G V +
Sbjct: 456 LTNLYTKGTYIDDQDGLELSGANGGAPATGHLLCITESYPKGLGSDE-KVQIGMVAVQPS 514
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA----LE 474
+ D L L+ +SP E + L K +K ++ S G A ++
Sbjct: 515 TGDIIYDDFEDGWMRCELETRLLHISPCEFLLVGE-LSKATEKLVQHLSGGDDARLERVD 573
Query: 475 LTPAMAVTDF----------LDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSA- 523
MA T + L +E + G+ L+ V H + +A
Sbjct: 574 KPKTMAATSYSHITQFYADKLKENEPSSSQVESSQETGT------LLDKV--HKLSENAT 625
Query: 524 --LGGLISHLSRLMLDDV----------------LRNGDIL-PYKVYRDCL-RMDGQTLY 563
L +I+HL L+ V L NG+ L ++YR+ + + +L+
Sbjct: 626 ICLSAMITHLKDYGLEHVFDLTRYFQSFSARSHMLLNGNTLTSLEIYRNQTDQTERGSLF 685
Query: 564 --LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE--VVMVVAQYLRKLP- 618
L+ T G+RLLR W+ PL D ++ R+ VE L S V +++ L K+
Sbjct: 686 WTLNRTQTKFGQRLLRKWVGRPLLDKLRLDQRVAAVEELQAGSANPAVDKISRLLGKVRV 745
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQ-VKVFGSLVKGLRIAMDLLMLMHKEGHI 677
DLE+ L R+ + A ++L + +++ Q+ V+V + G + +M G
Sbjct: 746 DLEKTLIRIYYKRAARPELLLFMQSLQLISQEYVQVTSAAEAGFKSSM--------VGEA 797
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQF--EAAIDSD----FPD-YQNHDVTD 721
I SL RI SD + +L + +AA D+D F D Y+ +TD
Sbjct: 798 IASLPRI--------SDEVISYLNRISAQAAKDNDKYNFFRDEYETEPMTD 840
>gi|409076365|gb|EKM76737.1| hypothetical protein AGABI1DRAFT_78171 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1262
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 163/312 (52%), Gaps = 20/312 (6%)
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
S L F + S W I + +D L S A ++++ RP V +G
Sbjct: 913 SRLFAEFDQDRSVWLRSIRVFAELDCLFSLAKSSTVIGSPSCRPEF--------VENAHG 964
Query: 788 GPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
+ + L HP L N + ND+ LG D + + LLTGPNM GKSTL+R T
Sbjct: 965 STFVDFEELRHPILCLNTNLKNFIANDVKLGGD----VGKVALLTGPNMAGKSTLMRMTA 1020
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
+ VI+AQLG FVP LS D+I TR+GA D + STF VE E + +L++AT S
Sbjct: 1021 IGVIMAQLGMFVPASKARLSPVDSIITRMGAYDNMFAHASTFKVELDECSKILREATPRS 1080
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
LVILDELGRGTSTFDG AIA AV QL FATHY LT +FA HP++ HM+
Sbjct: 1081 LVILDELGRGTSTFDGMAIAGAVLHQLATHTLPLTFFATHYGSLTDDFAQHPNIRNMHMS 1140
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ELVFLY+L G S+G VA +AGVP +VVE A + K
Sbjct: 1141 TLVDDEK-------KELVFLYKLIDGVAESSFGTHVANLAGVPFEVVERADIVSKQFAKQ 1193
Query: 1027 IGESFKSSEQRS 1038
E + ++++
Sbjct: 1194 FKEKLELKQKQN 1205
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/502 (29%), Positives = 236/502 (47%), Gaps = 77/502 (15%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
++D + +RP +P YD RTL+IP K+ + +KQ+W +K + D +LFF+ GKF+ELYE
Sbjct: 307 VKDKDGKRPGEPGYDPRTLHIPSSVWKEFTPFEKQFWEIKQNHYDTVLFFQKGKFFELYE 366
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T S V K VG+ E +D K + +GYKVGR++Q ET+ A+
Sbjct: 367 DDARIGHQEFDLKLT-SRV-KMSMVGVPEMSLDFWTAKFLGKGYKVGRVDQSETALGAEM 424
Query: 362 RHTNS------------VISRKLVNVVTPSTTVDGT--IGPDAVHLLAIKE--GNCGPDN 405
R+ + V R+L V T T VD I +A H +AI E G D
Sbjct: 425 RNKSKGKASEDKAKDKIVRRRELNKVYTNGTLVDPELLIDDNAGHCVAITEEPSEDGKDL 484
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
+ +G +DC+ + + DD L L+ Q+ PKE++++ L + L+
Sbjct: 485 QN-KFGICVLDCSTSQFNLSAFEDDVCRTKLETLMRQIRPKELLFKKGSLSVSTTRMLKM 543
Query: 466 FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF----------NGSSSPWS--KALEN 513
+ L ++ + D + + QL F + P S +++
Sbjct: 544 ILPTNV---LWTSLRTVEGFDYDQT--MEQLKTLFPPGDEDMEDDGDDALPASVPESIRE 598
Query: 514 VMQHDIGFSALGGLISHLSRLMLDD---VLRNGDILPYKVYRDCLRMDGQTL-------- 562
+ + +LG +I +L +L +D ++N ++ L ++GQ+L
Sbjct: 599 MASYPKAIESLGCMIWYLRQLNIDKEIISMKNFNVYDPMKRGQGLTLEGQSLAHLEILIN 658
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ C+TS GKRL R W+C PL++V IN RLD VE +M +
Sbjct: 659 NEGTEDGSLLKLLNRCITSFGKRLFRIWLCMPLRNVVDINARLDAVEDIMNHPTFEADFV 718
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMD----- 666
+ + LPDLER++ +R+ A++C + + KVL F L +GL D
Sbjct: 719 EIAKGLPDLERIV----SRIHANNCKIKDFL--KVLAS----FRKLSRGLNKLADESEDF 768
Query: 667 ----LLMLMHKEGHIIPSLSRI 684
+L L+ +IP + I
Sbjct: 769 KSKTILGLLRGAPDLIPHVKHI 790
>gi|426195177|gb|EKV45107.1| hypothetical protein AGABI2DRAFT_207943 [Agaricus bisporus var.
bisporus H97]
Length = 1263
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 163/312 (52%), Gaps = 20/312 (6%)
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
S L F + S W I + +D L S A ++++ RP V +G
Sbjct: 914 SRLFAEFDQDRSVWLRSIRVFAELDCLFSLAKSSTVIGSPSCRPEF--------VENAHG 965
Query: 788 GPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
+ + L HP L N + ND+ LG D + + LLTGPNM GKSTL+R T
Sbjct: 966 STFVDFEELRHPILCLNTNLKNFIANDVKLGGD----VGKVALLTGPNMAGKSTLMRMTA 1021
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
+ VI+AQLG FVP LS D+I TR+GA D + STF VE E + +L++AT S
Sbjct: 1022 IGVIMAQLGMFVPASKARLSPVDSIITRMGAYDNMFAHASTFKVELDECSKILREATPRS 1081
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
LVILDELGRGTSTFDG AIA AV QL FATHY LT +FA HP++ HM+
Sbjct: 1082 LVILDELGRGTSTFDGMAIAGAVLHQLATHTLPLTFFATHYGSLTDDFAQHPNIRNMHMS 1141
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ELVFLY+L G S+G VA +AGVP +VVE A + K
Sbjct: 1142 TLVDDEK-------KELVFLYKLIDGVAESSFGTHVANLAGVPFEVVERADIVSKQFAKQ 1194
Query: 1027 IGESFKSSEQRS 1038
E + ++++
Sbjct: 1195 FKEKLELKQKQN 1206
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 148/502 (29%), Positives = 240/502 (47%), Gaps = 77/502 (15%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
++D + +RP +P YD RTL+IP A K+ + +KQ+W +K + D +LFF+ GKF+ELYE
Sbjct: 308 VKDKDGKRPGEPGYDPRTLHIPSSAWKEFTPFEKQFWEIKQNHYDTVLFFQKGKFFELYE 367
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T S V K VG+ E +D K + +GYKVGR++Q ET+ A+
Sbjct: 368 DDARIGHQEFDLKLT-SRV-KMSMVGVPEMSLDFWTAKFLGKGYKVGRVDQSETALGAEM 425
Query: 362 RHTNS------------VISRKLVNVVTPSTTVDGT--IGPDAVHLLAIKE--GNCGPDN 405
R+ + V R+L V T T VD I +A H +AI E G D
Sbjct: 426 RNKSKGKASEDKAKDKIVRRRELNKVYTNGTLVDPELLIDDNAGHCVAITEEPSEDGKDL 485
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
+ +G +DC+ + + DD L L+ Q+ PKE++++ L + L+
Sbjct: 486 QN-KFGICVLDCSTSQFNLSAFEDDVCRTKLETLMRQIRPKELLFKKGSLSVSTTRMLKM 544
Query: 466 FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF---------NGSSS-PWS--KALEN 513
+ L ++ + D + + QL F +G + P S +++
Sbjct: 545 ILPTNV---LWTSLRTVEGFDYDQT--MEQLKTLFPPGDEDMEADGDDALPASVPESIRE 599
Query: 514 VMQHDIGFSALGGLISHLSRLMLDD---VLRNGDILPYKVYRDCLRMDGQTL-------- 562
+ + +LG +I +L +L +D ++N ++ L ++GQ+L
Sbjct: 600 MASYPKAIESLGCMIWYLRQLNIDKEIISMKNFNVYDPMKRGQGLTLEGQSLAHLEILIN 659
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
L+ C+TS GKRL R W+C PL++V IN RLD VE +M +
Sbjct: 660 NEGTEDGSLLKLLNRCITSFGKRLFRIWLCMPLRNVVDINARLDAVEDIMNHPTFEADFV 719
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMD----- 666
+ + LPDLER++ +R+ A++C + + KVL F L +GL D
Sbjct: 720 EIAKGLPDLERIV----SRIHANNCKIKDFL--KVLAS----FRKLSRGLNKLADESEGF 769
Query: 667 ----LLMLMHKEGHIIPSLSRI 684
+L L+ ++IP + I
Sbjct: 770 KSKTILGLLRGAPNLIPHVKHI 791
>gi|156083216|ref|XP_001609092.1| DNA repair protein [Babesia bovis T2Bo]
gi|154796342|gb|EDO05524.1| DNA repair protein, putative [Babesia bovis]
Length = 1313
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 183/333 (54%), Gaps = 40/333 (12%)
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV 810
+D L S A A S +LP ++ + + P + I+ HP + V
Sbjct: 1021 LDCLCSLAAVAKNS--------VLPLTRAEVIDRGTAEPFVLIRDAVHPIVSQIDPEGFV 1072
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PND+ LG D P +LLTGPNMGGKSTLLR L VI+AQ+G FVP C +++ D
Sbjct: 1073 PNDVQLGHG--DYQP-LILLTGPNMGGKSTLLRQVALCVIMAQMGSFVPGSECKMTVVDR 1129
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
+FTRLGA D I+ G+STFL+E E +++L AT+DSLV++DELGRGTSTF+ AIA A
Sbjct: 1130 VFTRLGAYDNIIQGKSTFLIEMEEASTILHSATRDSLVLVDELGRGTSTFEATAIAAACL 1189
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+L I CR +F TH+H + +V+L HMA + ++ + FLY+L+
Sbjct: 1190 EKL-SAIGCRGVFTTHFHEVWSYAKKLDNVSLCHMAASLDDK-------EKSITFLYKLS 1241
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKT 1050
G CPES+G+ VA +AG+P+ V + M + + S+++S++ +K+
Sbjct: 1242 LGLCPESHGIHVARLAGIPKHVTD--------MAEVVSRSYRASKRP----------IKS 1283
Query: 1051 IVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQL 1083
I+ DD+ + L+ EL+NS +
Sbjct: 1284 ILQALLEAHKQDDEPLFRRLY---DELRNSLHI 1313
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 118/477 (24%), Positives = 186/477 (38%), Gaps = 99/477 (20%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALK--------KMSASQKQYWNVKSQYMDV 287
W+ I+D + R+P D YD T++IPP+ + + +Q+WN+K D
Sbjct: 345 WVCVETIKDRDGRKPTDDNYDPSTIWIPPKGHRWATEYRSGHYTDCMQQWWNIKQDRFDQ 404
Query: 288 LLFFKVGKFYELYELDAEIGHK--ELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345
LLFFK+G+FYEL+ DA I + L W G VG E + V GY
Sbjct: 405 LLFFKMGRFYELFYHDACIVQQICGLRWM----GSEAKPHVGFPEKSLHIYASSCVDHGY 460
Query: 346 KVGRIEQLETSEQAKARHTNS-----VISRKLVNVVTPST-TVDGTIGPDAVHLLAI--- 396
KV +EQ ET +Q + R+ S +SR + ++TP T T + + LL I
Sbjct: 461 KVVVVEQTETPQQLEQRNRESGQRQNAVSRAICEIITPGTITRPEMLTKQSRPLLLITDV 520
Query: 397 --------KEGNCGPDNGSV--------------------------------VYGFAFVD 416
+ CG D G ++ D
Sbjct: 521 HREDMGTATDAKCGNDEGFTSPSHNESKTKLPSSLGRRTFELPRCLESGTGRMFCVCSFD 580
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELT 476
+ + +GT++ L A++ +SP EV+ ++ + + LR+ A ELT
Sbjct: 581 ASVGSLCLGTLDISLGMGQLRAIIAALSPAEVVVDS--TLSDHLEDLREM-ATYLGFELT 637
Query: 477 PAMAVTDFLDASEVKK-----LVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS-H 530
D A+ K V + N K + + + L+ +
Sbjct: 638 SFDCFEDVTHATVGDKDATVAEVDYTDFMN-------KVNATLGHQTFMYQRVILLVQRY 690
Query: 531 LSRLMLDDVLRNGDI-LPYKVYRDCLRMDGQTL-------------------YLDSCVTS 570
L +ML+++L I + YRDC+ +D L L+ +
Sbjct: 691 LKSVMLNNLLNYCTISILSSNYRDCMTLDCAVLTQLELFKSQEGDVSSSLFGVLNKTSCA 750
Query: 571 SGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
G+R+LR W+ PL IN R VVE+ +N V L +LPDLER G++
Sbjct: 751 FGERMLRQWLLKPLTCANRINERSAVVEFFHQNFSVCRAYQDQLCQLPDLERSFGKL 807
>gi|393212242|gb|EJC97743.1| DNA mismatch repair protein Msh6 [Fomitiporia mediterranea MF3/22]
Length = 1254
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 212/431 (49%), Gaps = 50/431 (11%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+ D + RP +P YD RTLYIP A K + ++Q+W +K+ + D +LFF+ GKF ELYE
Sbjct: 321 VHDKDGNRPGEPGYDPRTLYIPKSAWKTFTPFERQFWEIKANHYDTVLFFQKGKFLELYE 380
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS----- 356
DA IGH+E D K+T V C VG+ E + K +A+GYKVGR++Q ET+
Sbjct: 381 DDARIGHREFDLKLT-DRVKMC-MVGVPEGHFNTWAAKFLAKGYKVGRVDQAETALGAEM 438
Query: 357 --------EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNG 406
++ K + ++ R+L V T T VD + D A H ++I+E + D G
Sbjct: 439 RLAADKKLDKPKKEAGDKIVRRELNKVYTNGTLVDAELIVDDQAGHCVSIRELDPDSDRG 498
Query: 407 SVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKF 466
S +G +D + + DDA L +L Q+ PKE+++ L + L+
Sbjct: 499 S--FGVCVLDSSTSEFNLSAFGDDACRTKLETMLRQLRPKELLFTKGNLSVSTTRLLKAV 556
Query: 467 SAGS---AALELTPAMAVTDFLDASEVKKLVQ--LNGYFNGSSSPWSKALENVMQHDIGF 521
GS L + +D E+K L + G++ P A++ ++ +
Sbjct: 557 LPGSCIWTGLREVEGFGFKETMD--ELKNLYPDGEDDMEEGANIP--DAIKEMLTSETAV 612
Query: 522 SALGGLISHLSRLMLD-DVL--RNGDILPYKVYRDCLRMDGQTL---------------- 562
ALG +I +L +L +D D+L +N +I L +DGQTL
Sbjct: 613 IALGAMIWYLRQLNIDKDILSMKNFNIYDPMKRGQGLVLDGQTLAHVEVLQNSEGTDEGS 672
Query: 563 ---YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L C+T GKRL R W+C PL++V IN RLD V+ L+ + Q + +PD
Sbjct: 673 LLRILQRCITPFGKRLFRIWLCVPLREVSAINARLDAVQDLIDHPTFEHDFTQLAKGIPD 732
Query: 620 LERLLGRVKAR 630
LER++ R+ A+
Sbjct: 733 LERIVSRIHAK 743
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/276 (42%), Positives = 147/276 (53%), Gaps = 20/276 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W I ++ +D L S A SS A+ P P+ V D G +L + L HP
Sbjct: 929 WLRAIRTLAELDCLFSLA----KSSLAIGEPACRPE----FVEGDGAGALLDFEELRHPT 980
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+ +PND+ LG + R LLTGPNMGGKST +R T VI+AQLG VP
Sbjct: 981 MCLKADNF-IPNDVKLG----GGVGRVALLTGPNMGGKSTAMRMTAAGVIMAQLGMLVPA 1035
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+S D I TR+GA D + + STF VE E +L++AT SLVILDELGRGTST+
Sbjct: 1036 RRARISPVDAILTRMGAYDNMFSNASTFKVELDECCKILREATPRSLVILDELGRGTSTY 1095
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG AIA AV QL FATHY LT +FA HP++ HM+
Sbjct: 1096 DGMAIAGAVLHQLATHTLPLCFFATHYGSLTDDFAYHPNIRNMHMSTIIDDEK------- 1148
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
ELVFLY+L G S+G VA +AGVP VV+ A
Sbjct: 1149 CELVFLYKLVEGVAASSFGTHVANLAGVPMDVVKRA 1184
>gi|345568246|gb|EGX51143.1| hypothetical protein AOL_s00054g519 [Arthrobotrys oligospora ATCC
24927]
Length = 926
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 185/344 (53%), Gaps = 30/344 (8%)
Query: 699 FLTQFEAAIDSDFPDY-QNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCI----DV 753
F T +++ DF Y QN++ T + L++ + AS + V ++ + DV
Sbjct: 537 FTTDKLSSLRRDFDQYTQNYN------RTQTGLVQEVVNVASSYCPVFENLAAVLAHLDV 590
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPND 813
+ SFA + + RP + P+ + + +K HP ++ + ND
Sbjct: 591 IVSFAHVSVHAPSPYVRPTMHPRGEGNTI----------LKEARHPCMEMQDDIQFITND 640
Query: 814 ILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFT 873
+ L DS + L ++TGPNMGGKST +R + ++AQ GCFVPC L++ D I
Sbjct: 641 VELIRDSSEFL----IITGPNMGGKSTYIRQIGVIALMAQAGCFVPCSEAELTIFDCILA 696
Query: 874 RLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL 933
R+GA+D + G STF+ E ETA++L+ AT++SL+I+DELGRGTST+DG+ +A+A+ +
Sbjct: 697 RVGASDSQLKGVSTFMAEMLETATILKSATRESLIIIDELGRGTSTYDGFGLAWAISEYI 756
Query: 934 VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
V++I C +FATH+H LT +P V H+ + N + +E+ LY+++ G
Sbjct: 757 VKQIKCFAMFATHFHELTALVEEYPVVKNLHVVAHVGDKNGNDGERKREVTLLYKVSEGV 816
Query: 994 CPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQR 1037
C +S+G+ VA + PQKVV A A + E FK R
Sbjct: 817 CDQSFGIHVAELVRFPQKVVNMAKRKADEL-----EDFKGKHDR 855
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 41/242 (16%)
Query: 409 VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSA 468
V G AF D + + V D+ + +LL+Q+ KE I + K+ + +
Sbjct: 148 VVGVAFADASVRELGVSEFVDNDLYSNFESLLIQLGVKECIIQTNDSKKDVENTKLRSII 207
Query: 469 GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD--IGFSALGG 526
+ +T + +DF + L +L A+ ++ Q D + A
Sbjct: 208 DRCGVVITDKKS-SDFAGKDVEQDLTRL--------LKDDVAVGSLPQADLKVAMCAASA 258
Query: 527 LISHLSRLMLDDVLRNGDILPYKVYR----DCLRMDGQTL-------------------- 562
LI +L ++ D L G Y++Y+ + +++D L
Sbjct: 259 LIRYLG--LMSDQLNFGQ---YRLYQHDLAEYMKLDASALKALNLMPGPRDGSKNMSVYG 313
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLE 621
L+ C T+ G RLL W+ PL +E I R +VE ++++E+ + ++LR +PDL
Sbjct: 314 LLNKCKTAVGTRLLAQWLKQPLMSLEEIEKRHLLVEAFVEDTELRQTMQEEHLRSVPDLY 373
Query: 622 RL 623
RL
Sbjct: 374 RL 375
>gi|409048502|gb|EKM57980.1| hypothetical protein PHACADRAFT_116507 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1277
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/286 (43%), Positives = 161/286 (56%), Gaps = 25/286 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + S W + +S +D L S A +S A+ P P+ V D +
Sbjct: 937 FDKDRSVWLRAVRVLSELDCLFSLA----KASVALGEPACRPE----LVAGDEA--FVDF 986
Query: 794 KGLWHPFALGENGGLP---VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+ L HP AL + G +PND+ LGE+ + R +LLTGPNMGGKST +R T VI
Sbjct: 987 EELRHP-ALSVSAGFKGDFIPNDVKLGEN----VGRIVLLTGPNMGGKSTAMRMTAAGVI 1041
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQLG FVP + L D I TR+GA D + + STF VE E +L++AT SLVIL
Sbjct: 1042 MAQLGMFVPAKRAKLCPVDAILTRMGAYDNMFSNASTFKVELDECCKILREATPRSLVIL 1101
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTST+DG AIA AV QL FATHY LT ++A HP++ HMA
Sbjct: 1102 DELGRGTSTYDGMAIAGAVLHQLATHTLSLSFFATHYGSLTDDYAYHPNIRNMHMATHV- 1160
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ EN +EL+FLY+L G S+G VA +AGVPQ+V++ A
Sbjct: 1161 -DDEN-----RELIFLYKLVEGVASSSFGTHVANLAGVPQEVIQRA 1200
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 151/483 (31%), Positives = 225/483 (46%), Gaps = 80/483 (16%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD + RP +P YD RTLYIPP+A K + +KQ+W +K + D +LFF+ GKF ELYE
Sbjct: 325 VRDKDGVRPSEPGYDPRTLYIPPKAWKAFTPFEKQFWEIKQNHFDTVLFFQKGKFLELYE 384
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T S V K VG+ E + K +A+GYKVGR++Q ET+ A+
Sbjct: 385 EDARIGHQEFDLKLT-SRV-KMSMVGVPEQNFNFWAAKFLAKGYKVGRVDQAETALGAEM 442
Query: 362 R--------------HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIK-EGNCGPD 404
R + ++ R+L V T T VD + D A H ++I+ EG P
Sbjct: 443 RLAADKGKTKAKAAAGADKIVRRELNKVYTNGTLVDEALLTDDQAGHCVSIREEGEEDPK 502
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
G +G +D + + DD L ++ Q+ PKE+++ + + L+
Sbjct: 503 TGKQKFGLCVLDSSTSEFNLSAFEDDICRTKLETMVRQLRPKEIVFTKGNISVPTMRLLK 562
Query: 465 ------------------KFSAGSAAL-ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
F A AL EL P+ D L S
Sbjct: 563 AILPSNCLWTSLRDCEGLSFDATIKALKELYPSSLDDDDDLEPRPHSL----------SK 612
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLML-DDVL--RNGDILPYKVYRDCLRMDGQTL 562
+A+ N+++++ ALG +I +L L + +D+L +N ++ L +DGQTL
Sbjct: 613 SVPEAILNMVRYEGAVEALGSMIWYLRTLNIGNDILSMKNFNVYDPMKRGQGLVLDGQTL 672
Query: 563 -------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
L C+T SGKRL R W+C PL+D+ IN RLD V+ L+ +
Sbjct: 673 AHIEVLVNSEGTEDGSLLKLLSQCITPSGKRLFRIWLCMPLRDIADINARLDAVQDLIDH 732
Query: 604 SEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRI 663
+ + L DLER++ +RV A +C V + KVL F +L KGL
Sbjct: 733 PTFEAEFNEVAKGLGDLERIV----SRVHAKNCKVKDFL--KVLDS----FKTLSKGLSA 782
Query: 664 AMD 666
D
Sbjct: 783 LAD 785
>gi|50557004|ref|XP_505910.1| YALI0F26499p [Yarrowia lipolytica]
gi|49651780|emb|CAG78722.1| YALI0F26499p [Yarrowia lipolytica CLIB122]
Length = 1149
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/466 (31%), Positives = 225/466 (48%), Gaps = 51/466 (10%)
Query: 200 KNSSLLDSSKRMRLLQDSV-AGVKNCEEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKR 258
K+S D S R + +V G K+ E + T +++WL I+DA P YD R
Sbjct: 202 KSSYTSDKSARPAAKKAAVNGGGKHSEFAKNNTERYKWL--IDIKDAQGNPEGSPDYDPR 259
Query: 259 TLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS 318
TLYIP A K +A +KQYW VKS+ + ++FFK GKFYELYE DA+I H E D K+
Sbjct: 260 TLYIPSSAWSKFTAFEKQYWEVKSKMWNTVVFFKKGKFYELYERDADIAHSEFDLKLAGG 319
Query: 319 GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS------EQAKARHTNSVISRKL 372
G R G+ E + G+KV R++Q E++ E A + + VI R+L
Sbjct: 320 GRANMRLCGVPEMSFFSWSNAFIKNGHKVARVDQKESALAKEMRETATLKKEDKVIKREL 379
Query: 373 VNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDD 430
V+T T D + A + +A+K+ GS + AFVD A+ + DD
Sbjct: 380 SLVLTSGTLTDEKMLTTDLATYCMAVKQ------EGSRI-AVAFVDTASGAFHTSSFEDD 432
Query: 431 ASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASE 489
A + L+ Q+ P EV+ E + K K L++ + + L P +F DA+
Sbjct: 433 ADFSKFETLVAQIRPGEVLLEKGIIDKAVVKILKRNTTINTLWNYLIPK---AEFWDATT 489
Query: 490 VKKLVQLNGYFNGSS----SPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGD 544
+ + YF S + + L++ ++ D+ SA G L+ ++ L LD +++ G+
Sbjct: 490 AMEQLTRGKYFEAEDLDDMSNYPEHLKSFIEDDVCMSAFGALLWYMQYLKLDKELVSLGN 549
Query: 545 ILPYK-VYRDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHP 583
Y+ + + + +DG +L L+ CV+ GKRLL+ W+ P
Sbjct: 550 FSDYEPIQSEYMVLDGHSLQNLEVFANSYDSTDAGTLFKLLNKCVSPFGKRLLQQWVALP 609
Query: 584 LKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
L D I RLD VE M++ + + L KLPDLERLL R+ A
Sbjct: 610 LLDQVKIEARLDAVEAFMEDD---FGIERRLAKLPDLERLLARIHA 652
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 148/287 (51%), Gaps = 21/287 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F E S W + + +D L S A + RP +P LK
Sbjct: 831 FDEHYSSWLRCVEVCAQLDCLLSLAKCSQTLGSPSCRPEFVPYV-------SGTDATLKF 883
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+GL HP ++ +PND+ LG D + LLTG N GKST+LR TC A ++AQ
Sbjct: 884 EGLRHP--CFDSTKQFIPNDVSLGGDEANIT----LLTGANAAGKSTVLRMTCTAAVMAQ 937
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GC VP L+ D I TRLGA D I G+STF VE +ET V AT SL++LDEL
Sbjct: 938 MGCHVPAASARLTPIDRIITRLGAQDNIFAGKSTFYVELSETKKVFD-ATPQSLIVLDEL 996
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRG S+ DG+AIA AV + ++ C FATHY L F HP V MA
Sbjct: 997 GRGGSSADGFAIAEAVLHHVATQVGCLGFFATHYGTLHTSFTHHPQVRPMRMAILV---- 1052
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
S+ +E+ FLY+L G+ P S+G+ VA M G+ + +V+ A AA
Sbjct: 1053 ---SEASKEITFLYKLEPGSSPGSFGMHVAAMCGIDKSIVDNAEEAA 1096
>gi|225174620|ref|ZP_03728618.1| DNA mismatch repair protein MutS [Dethiobacter alkaliphilus AHT 1]
gi|225169747|gb|EEG78543.1| DNA mismatch repair protein MutS [Dethiobacter alkaliphilus AHT 1]
Length = 867
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 146/231 (63%), Gaps = 14/231 (6%)
Query: 784 QDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
Q + G V+ I+ HP + VPND L D+ R L++TGPNM GKST +
Sbjct: 574 QVDDGDVVDIREGRHPVVERVMQDSMFVPNDTRLDRDNQ----RLLMITGPNMAGKSTYM 629
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R T L V+LAQ+G FVP + L D IFTR+GA D ++ G+STF+VE +E A++L +A
Sbjct: 630 RQTALIVLLAQVGSFVPAASANIGLVDRIFTRIGAADDLVGGQSTFMVEMSEVANILSRA 689
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLV+LDE+GRGTSTFDG +IA AV L ++ R LFATHYH LT + P V
Sbjct: 690 TDKSLVLLDEVGRGTSTFDGISIARAVVEHLYGKVGARTLFATHYHELTDLASDLPAV-- 747
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
Q+MA A K E+ +VFL+++ +G+ SYG+QVA +AG+PQ+V+
Sbjct: 748 QNMATAVKEKGED-------IVFLHKVIAGSVDHSYGIQVARLAGLPQRVI 791
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 177/397 (44%), Gaps = 42/397 (10%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-CRQVGISESGI 333
+QY +K D +L F+VG FYEL+ DA+IG +EL+ ITL+ K G +
Sbjct: 9 RQYREIKEHNQDKILLFRVGDFYELFFDDAKIGARELE--ITLTARDKDVPLAGFPYHAL 66
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV-- 391
+ + +L+ RGYKV EQ+E +QAK ++ R++V V+TP T + ++ +
Sbjct: 67 NTYLSRLIERGYKVAICEQVEDPKQAKG-----IVKREIVQVITPGTVTETSLLDEKSNN 121
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+++ G G +G A VD + + + + L L +++P E+I
Sbjct: 122 YLVSVYVGRGG-------FGLAAVDVSTGQFVMSQERGSQAARFLADELCRLNPAEIIV- 173
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL---NGYFNGSSSPWS 508
N G K+ Q + + + P L ++ L Q N G + +
Sbjct: 174 NEG-AKDNQVLTEAMARLGTQVAINPCRDKNYALKQAQETLLSQFAVQNLDSLGCADLFF 232
Query: 509 KALENVMQHDIGFSALGGLISHLSR---------LMLDDVLRNGDILPYKVYRDCLRMDG 559
G +SHL + ++LD R L + + R G
Sbjct: 233 AVSAAGAALAYLHDNRQGNLSHLQQPEVYNAEGYMVLDAATRRNLELTRTIREE--RKYG 290
Query: 560 QTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
L+ LD ++ G RLL+ W+ PL D I RLD VE L + ++ +++ L ++
Sbjct: 291 SLLWVLDKTRSALGGRLLKRWLEQPLLDKAAICERLDAVEELAGDFLMLDELSELLDEVY 350
Query: 619 DLERLLGRV-----KAR---VQASSCIVLPLIGKKVL 647
DLERLL +V AR S+ VLP + +K+L
Sbjct: 351 DLERLLSKVHYESANARDLVALRSTLAVLPAVREKLL 387
>gi|328713533|ref|XP_001949991.2| PREDICTED: DNA mismatch repair protein Msh2 [Acyrthosiphon pisum]
Length = 697
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 201/373 (53%), Gaps = 38/373 (10%)
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVI----HAISCIDVLRSFAVTASMSSGAM 768
DYQ+ L+ + SI++E+ I+ AS +S I ++ +DVL SF++ A+ S
Sbjct: 354 DYQSIHKNYLEHQK-SIVVEV-IQTASSYSATILNLSRTLAQLDVLTSFSMLAASSLRPY 411
Query: 769 HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTL 828
RP + PQ G +L +K + HP ++ +PND + C
Sbjct: 412 VRPNLHPQ----------GTGLLDLKQVRHPCVEVQDSVSYIPNDAYFNQGK--CTFN-- 457
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
++TGPNMGGKST +R+ +AV +A +G FVPC+ +S+ D I R+GA D + G STF
Sbjct: 458 VITGPNMGGKSTYIRSVAVAVFMAHMGSFVPCDAAEISVVDAILARVGANDSQIKGLSTF 517
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+VE ET S+L++AT +SLVI+DELGRGTST++G IA A+ +L LFATH+H
Sbjct: 518 MVEMIETVSILKRATSESLVIIDELGRGTSTYEGCGIACAIAERLAVETKAFTLFATHFH 577
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LTK + P +T +H++ D L LY++ G+C +S+G+ VA MA
Sbjct: 578 ELTKLHETIPTITNKHVSAV---------TTDDSLTLLYQVQPGSCDKSFGIHVAAMAKF 628
Query: 1009 PQKVVEAASHAALAMKKSIGESFKSSE----QRSEFSSLHEEWLKTIVNVSRVDCNSDDD 1064
P+ V++ A A K ++ ESF++++ + E + +E +C S +D
Sbjct: 629 PKNVIQNA-----AKKLALLESFQNNQILEDNQKEINEADKEKFLNECKRCAQECTSSED 683
Query: 1065 DAYDTLFCLWHEL 1077
+ ++ + L E
Sbjct: 684 ELFNRIKKLRTEF 696
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
+ C + G+RLL WI PL+D+ IN RLD+VE L+ ++++ + Q+LR +PDL+
Sbjct: 128 FNKCRSPHGQRLLTQWIRQPLRDLNKINERLDIVETLVTDTDIRQQLHDQHLRTIPDLQA 187
Query: 623 LLGRVKAR 630
L+ +++ +
Sbjct: 188 LMRKIQRK 195
>gi|187734854|ref|YP_001876966.1| DNA mismatch repair protein MutS [Akkermansia muciniphila ATCC
BAA-835]
gi|187424906|gb|ACD04185.1| DNA mismatch repair protein MutS [Akkermansia muciniphila ATCC
BAA-835]
Length = 823
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 223/829 (26%), Positives = 355/829 (42%), Gaps = 144/829 (17%)
Query: 276 QYWNVKSQY-MDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQVGISESGI 333
QY +K DVLLFF++G FYE++ DA+ L +T G+ C G+
Sbjct: 4 QYLRMKKGLPEDVLLFFRLGDFYEMFFEDAKEASAILGLTLTKRHGIPMC---GVPHHSA 60
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH- 392
+ + +LV G +V EQ + K ++ R+L V++ T D + + H
Sbjct: 61 EGYIGRLVKGGKRVAIAEQTTIPQPGK------LVERELTRVISAGTLADMNLLDSSRHN 114
Query: 393 -LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
++A+ + +G A VD V L L +++P E++
Sbjct: 115 YIVALYKDKKR-------FGLACVDHTTGEFSVAQFE---HMDLLLDELSRINPSELLVS 164
Query: 452 NRGL-CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
+ C + + P+ A+ + L+ V L +G+ G + A
Sbjct: 165 DEQTDCFPGTHPTLYYDGYT----FLPSTAIPNLLNHFRVHSL---DGFGCGEMTAALGA 217
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---GQTL----Y 563
V+ H +G+ L HL R+ + N ++ R+ +D G L
Sbjct: 218 SGAVL-HYLGYQ-LRRPTDHLRRISVR-ATENAVLIDQASQRNLDLVDSRGGVKLSLLGT 274
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE------YLMK--------------- 602
LD T G R LR W+ HPL D+E + R +V+ YLM
Sbjct: 275 LDRTSTPMGARKLRDWLLHPLCDLEKLLARQEVIAVLLQEPYLMSKLRESLKNVRDMERL 334
Query: 603 ---------NSEVVMVVAQYLRKLP----DLERLLG------RVKARVQASSCIVLPLIG 643
N+ + +A L ++P DLE L G +++R+ +V L+
Sbjct: 335 TGRISQGAGNARDLQALASSLARIPALRDDLESLPGGGDMLESIRSRMGCFDELV-DLLQ 393
Query: 644 KKVLKQ---QVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFL 700
+ ++ + +K G + +G +D L L ++G L+R+ + G+D
Sbjct: 394 RALVDEPPVTIKEGGIIREGYHAGLDELRLASRDGK--EWLARLQEKE--RKRTGIDSLK 449
Query: 701 TQF-----------EAAIDSDFPDYQN-------------------HDVTDLDAETLSIL 730
+F ++ D PDYQ + + D + +
Sbjct: 450 IRFNNVFGYYIEVTKSHYDKVPPDYQRKQTLVNAERFITPELKQMENTILGADERSRQVE 509
Query: 731 IELFIEKASQWSEVIHAISCI-DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
E F+ + I I D + V ++ GA P N
Sbjct: 510 YEQFLLLREEVGRHIDDIQITADAMADLDVLLGLAEGAQQYRYCRPVLDNSMT------- 562
Query: 790 VLKIKGLWHPFALGEN--GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L+I HP + +N G + VPND L + + R +LLTGPNM GKST +R L
Sbjct: 563 -LRIVNGRHP-VIEQNVSGDVFVPNDAFLEPEEN----RLILLTGPNMAGKSTYIRQVAL 616
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
++AQ+G +VP E + L D IF R+GA+D + G+STF+VE +ET+ +L AT+ SL
Sbjct: 617 ITLMAQIGAYVPAESAHIGLVDRIFCRVGASDDLARGQSTFMVEMSETSLILNNATERSL 676
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
+ILDE+GRGT+TFDG +IA+AV L + + R LFATHYH LT S V Q+
Sbjct: 677 IILDEIGRGTATFDGLSIAWAVAEYLHDELKSRTLFATHYHELTDLANSRQGV--QNYNV 734
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
A + E E+VFL ++ GA +SYG+QVA +AG+P +V+ A
Sbjct: 735 AVREWKE-------EIVFLRKIVPGAADKSYGIQVARLAGMPAVIVDRA 776
>gi|442804336|ref|YP_007372485.1| DNA mismatch repair protein MutS [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740186|gb|AGC67875.1| DNA mismatch repair protein MutS [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 870
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 163/291 (56%), Gaps = 25/291 (8%)
Query: 732 ELFIEKASQWSEVIHAIS-CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
ELF E + + +H I D L V S++ A + P V + G
Sbjct: 529 ELFCEIREKIAAEVHRIQRTADRLAQLDVLCSLAEVADRENYV-----KPVVHE---GSE 580
Query: 791 LKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ IK HP G P VPND L +D+D R +++TGPNM GKST LR L V
Sbjct: 581 IDIKDGRHPVVEKVLGSSPFVPNDAYLNDDTD----RVIIITGPNMAGKSTYLRQVALIV 636
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+G FVP + + D IFTR+GA+D + +G+STF+VE TE A++L AT SL+I
Sbjct: 637 LMAQMGSFVPASKATIGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILNNATPRSLLI 696
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
LDE+GRGTST DG AIA++V + + R+ CR LFATHYH LT+ L+
Sbjct: 697 LDEIGRGTSTHDGLAIAWSVIEYINDKSRLGCRTLFATHYHELTE---------LEDKLT 747
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
K+ K E++FL ++ G +SYG++VA +AGVP+ V+E A H
Sbjct: 748 GIKNCCIEVKKRGDEIIFLRKIIPGGADQSYGIEVAGLAGVPELVIERAKH 798
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 162/395 (41%), Gaps = 63/395 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQ 325
K++ +QY K QY D LLFF++G FYEL+ DAEI +EL+ +T G +
Sbjct: 2 KLTPMMQQYIETKKQYQDCLLFFRLGDFYELFFEDAEIASRELEIALTGRDCGLDERAPM 61
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + KL+ +GYKV EQ+E AK ++ R++ V+TP T D
Sbjct: 62 CGVPWHSAHHYIAKLINKGYKVAICEQMEDPALAKG-----IVKREVTRVITPGTVTD-- 114
Query: 386 IGPDAVHLLAIKEGN------CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
P+ +L K+ N C + +G A D + + + L
Sbjct: 115 --PE---MLDEKKNNFLMSVYCSRN----YFGIAVADVTTGEFYTTQLIYGNTVNKLFDE 165
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
+ + P E++ N+ K + +TP LD + L+G
Sbjct: 166 IYRYQPSELLV-NQQFLKNVPGETLDILKERMGIYITP-------LDDEYFDRNKALSGI 217
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV--------- 550
N K ++ Q + A G LI +L D+ +I YK+
Sbjct: 218 KN------YKGCNSIEQDEFALCASGALIGYLKVTQKVDLNHIKEIQKYKIENYMIIDSS 271
Query: 551 ----------YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
RD + LD +T+ G RLLR WI PL DV+ IN RLD VE L
Sbjct: 272 SRRNLELTETLRDRKKRGTLLWVLDRTMTAMGGRLLRKWIEQPLLDVDEINRRLDAVEEL 331
Query: 601 MKNSEVVMVVAQYLRKLPDLERL-----LGRVKAR 630
+ + + L+K+ D+ERL +G V AR
Sbjct: 332 KDKFMIRSELRELLKKVYDMERLASKLVVGNVNAR 366
>gi|365758493|gb|EHN00331.1| Msh2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 964
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 172/315 (54%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P N HP ++
Sbjct: 616 VLAHLDVISSFAHTSSYAPIPYIRPKLHPMDSERKTHLVNSR---------HPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + ++I C LFATH+H LT+ P+V H+ + NS D+++ L
Sbjct: 783 WAIAEHIADKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNSNEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E+ K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTTNENLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 143/361 (39%), Gaps = 77/361 (21%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ V G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCVIGIAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNPNSNTEIQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + T+F + L++L G S P +SK
Sbjct: 212 KVINVLDRCECVITL---LRNTEFSEKDVELDLIKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ I R D+V+YL
Sbjct: 319 NTLAVSGFTNAGNTGKITSLFHLLNHCRTNAGVRLLNEWLKQPLTNIDEITKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ +L +PD+ RL ++ R + + KK+ + V +F S +
Sbjct: 379 IDQIELRQMLTTDFLPMIPDIRRLTKKLNKRGSLEDVLKIYQFSKKI-PEIVNLFNSFL- 436
Query: 660 GLRIAMDLLMLMHKEGHIIPSLSRI----FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQ 715
+EG + SL + + P+ + L KF E +D D +
Sbjct: 437 -------------EEGSLAESLKELVCSTWLAPLSHHVEPLSKFEEMVETTVDLDAYEEN 483
Query: 716 N 716
N
Sbjct: 484 N 484
>gi|145547527|ref|XP_001459445.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427270|emb|CAK92048.1| unnamed protein product [Paramecium tetraurelia]
Length = 1084
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 170/329 (51%), Gaps = 26/329 (7%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCI---DVLRSFAVTASMSSGAMHRPLILPQS 777
+L + L + E F + S E + IS + D L S A+ + A S
Sbjct: 777 ELSQKLLPFINEYFTKFYSYRKEFLQLISFLSEADCLISLAIVSKEQKMA---------S 827
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGG 837
P + +D+ K+ +HP L + VPN I + D TLLLTGPNM G
Sbjct: 828 CFPKINKDSDEREFKLVEAYHPCLLKDTSIEWVPNTIKFSDSID-----TLLLTGPNMSG 882
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KSTLLR +++ILAQ+GC VP L+ D IF RLGATDR++ G+STF +E ET +
Sbjct: 883 KSTLLRLIGVSIILAQIGCAVPANSFSLTPFDRIFCRLGATDRLLEGKSTFFIELEETKT 942
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957
+L +T S VI+DELGRGTST+DG A+A AV R L E+I +FATHYH L EF
Sbjct: 943 ILDHSTSKSFVIIDELGRGTSTYDGIALASAVLRYLQEKIKPLTIFATHYHILLDEFELF 1002
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
++ C Y + +L+F Y+L G S+ VA+ AG+PQ+V++ A
Sbjct: 1003 KNIN----QCVML-----YYQNKDQLIFRYKLVEGVAERSFSTNVALKAGIPQEVIQTAK 1053
Query: 1018 HAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
+ K K+ E +F+ + E
Sbjct: 1054 QMETRITKEESNIKKNREILQKFNQILTE 1082
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 105/220 (47%), Gaps = 10/220 (4%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
+L P IRD+ RRP++P Y+ TLYI +K+S KQYWNVK + + FF+ G
Sbjct: 119 FLQPENIRDSKGRRPNEPNYNPSTLYISNYEYEKLSPIFKQYWNVKKNNFEFIAFFRCGS 178
Query: 296 FYELYELDAEIGHKELDWKITLSGVGK-CRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
+ + DA + + + + G C + I ++ + L+ +GYK+ I+Q E
Sbjct: 179 WIAVLYNDAIVIAQMFNRYLGFWGKDTPC--LTIYDNQLPIYQRALLEKGYKIMMIDQQE 236
Query: 355 TSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPDAVHLLAIKEGNCGPDNG---SVV 409
S++ + +I R++ ++T T + T + +LL + N P N S +
Sbjct: 237 FSDKTN-KEDGEIIRREITQMITRGTLQELGDTDSYEQRNLLVLVFSN-APANSKGHSYI 294
Query: 410 YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
YG + VDC + DDA L +++ P EVI
Sbjct: 295 YGVSIVDCTTNQFSFDQFYDDAQSNHLKSVIYNTKPVEVI 334
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 28/185 (15%)
Query: 493 LVQLNGYFN--GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNG--DILP 547
L++L FN SS N + + L+S+L +L++ + V R G + L
Sbjct: 435 LIELETQFNHEKKSSNQEDNESNFYSYYYVLQSFYILLSYLRQLLISNSVYRRGKFNFLD 494
Query: 548 YKVYRDC-LRMDGQTL----------------------YLDSCVTSSGKRLLRSWICHPL 584
+ R L +D QTL YLD C T GKRLL W+ PL
Sbjct: 495 SNMIRSAHLYLDAQTLESLEIFDVNLKTKVTNSDSLFSYLDRCSTYPGKRLLTKWVQSPL 554
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGK 644
++ I R V+ L + + LPDLER + R + + +P GK
Sbjct: 555 QNYNSIIERQQCVKELCNFLPQCYEFQKKISSLPDLERAIIRCFNTIHSHKLKAVPSCGK 614
Query: 645 KVLKQ 649
LK+
Sbjct: 615 TKLKE 619
>gi|332224846|ref|XP_003261579.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Msh3
[Nomascus leucogenys]
Length = 1125
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 123/332 (37%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 788 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 842
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN L EDS+ R +++TGPNMGGK
Sbjct: 843 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNSTDLSEDSE----RVMIITGPNMGGK 890
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 891 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 950
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 951 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1010
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G +E V FLY++T G SYGL VA +A VP ++
Sbjct: 1011 HQVGNYHMGFLVSEDESKLDPGAEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1070
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + +E ++H
Sbjct: 1071 LKKAAHKSKELEGLINTKRKRLKYFAELWTMH 1102
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 188/443 (42%), Gaps = 75/443 (16%)
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
+ + E L + + AN+R +++Y P E QY +K Q+ D +L
Sbjct: 194 SNTSHENLQKTASKPANKR--------SKSIYTPLEL---------QYIEMKQQHRDAVL 236
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
+ G Y + DAEI +EL+ L I + V +LVA+GYKVG
Sbjct: 237 CVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGV 294
Query: 350 IEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------ 391
++Q ET+ +A + +S+ SRKL + T ST + + P DAV
Sbjct: 295 VKQTETAALKAIGDNRSSLFSRKLTAIYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTS 354
Query: 392 HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+LL I KE G++ G V A V + D AS + L + + P E+
Sbjct: 355 YLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVEL 414
Query: 449 IYENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKK 492
+ + L ++ + + + ++ S E + A AVT+F D ++K
Sbjct: 415 LLPS-ALSEQTEALVHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKG 473
Query: 493 LVQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
++G N + + K LE ++ F L + ++ + LR
Sbjct: 474 SQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLR 531
Query: 542 NGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EY 599
N +IL + ++ G L+ LD TS G+R L+ W+ PL + IN RLD V E
Sbjct: 532 NLEILQNQT---DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 588
Query: 600 LMKNSEVVMVVAQYLRKLPDLER 622
L S V + +LRKLPD+ER
Sbjct: 589 LHSESSVFGQIENHLRKLPDIER 611
>gi|449544351|gb|EMD35324.1| hypothetical protein CERSUDRAFT_124668 [Ceriporiopsis subvermispora
B]
Length = 1305
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 213/440 (48%), Gaps = 57/440 (12%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
++D + RP +P YD RTLYIPP+A + +KQ+W +K + D +LFF+ GKF ELYE
Sbjct: 353 VKDKDGVRPGEPGYDPRTLYIPPKAWNGFTPFEKQFWEIKQNHYDTVLFFQKGKFLELYE 412
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T S V K VG+ E + K + +GYKVGR++Q ET+ A+
Sbjct: 413 EDARIGHREFDLKLT-SRV-KMSMVGVPEMSFNFWAAKFLGKGYKVGRVDQAETALGAEM 470
Query: 362 R-----------------HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCG 402
R + ++ R+L V T T VD + D A H ++I+E + G
Sbjct: 471 RLAADKKGGKGKVAAGDKAKDKIVRRELNKVYTNGTLVDAELLTDEQAGHCVSIREEDDG 530
Query: 403 PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKA 462
+G +G +D A + DD L ++ Q+ PKE+I+ L +
Sbjct: 531 --SGKQTFGICVLDSATSEFNLSAFEDDVCRTRLETMMRQLRPKEMIFTKGNLSVSTTRL 588
Query: 463 LRKFSAGS---AALELTPAMAVTDFLDASEVKKL-------VQLNGYFNGSSSPWSKALE 512
L+ GS +L + + L+ ++ +L +++N ++ A+
Sbjct: 589 LKAILPGSCLWTSLRESEGLTYDKTLE--KLNELYPAGEDDIEMNDSPRHLNNAVPDAIR 646
Query: 513 NVMQHDIGFSALGGLISHLSRLMLD-DVL--RNGDILPYKVYRDCLRMDGQTL------- 562
+ H ALG +I +L+ L +D D+L +N ++ L +DGQTL
Sbjct: 647 EMAGHKASVEALGSMIWYLNTLNIDKDILSMKNFNVYDPMQRGQGLVLDGQTLAHVEVLM 706
Query: 563 ------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
L C+T SGKRL R W+C PL++V IN RLD V+ L+ +
Sbjct: 707 NNEGTEEGSLLKLLGRCITPSGKRLFRIWLCMPLRNVSDINARLDAVQDLLNHPSFEQEF 766
Query: 611 AQYLRKLPDLERLLGRVKAR 630
+ LPDLER++ R+ A+
Sbjct: 767 TSVAKGLPDLERIVSRIHAK 786
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 156/297 (52%), Gaps = 29/297 (9%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S W I ++ +D L S A +S A+ P P+ + D + + L H
Sbjct: 970 SVWLRAIRVLAELDCLFSLA----KASAALGEPACRPE----LIEGD--AAFIDFEELRH 1019
Query: 799 PFALGENGGLP---VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
P AL + GL +PND+ LG D+ R LLTGPNMGGKST +R T +I+AQ+G
Sbjct: 1020 P-ALCTSTGLKGDFIPNDVKLGGDAG----RIALLTGPNMGGKSTAMRMTATGIIMAQMG 1074
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
VP + L D+I TR+GA D + + STF VE E +L+ AT S VILDELGR
Sbjct: 1075 MLVPAKSARLCPVDSILTRMGAYDNMFSNASTFKVELDECCKILRDATPKSFVILDELGR 1134
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTST+DG AIA AV QL FATHY LT ++A HP++ HM
Sbjct: 1135 GTSTYDGMAIAGAVLHQLATHTLALSFFATHYGSLTDDYAYHPNIKNMHMETLVDDEK-- 1192
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
+ELVFLY+L G S+G VA +AGVP +VVE A + K + FK
Sbjct: 1193 -----RELVFLYKLVEGVASSSFGTHVANLAGVPIEVVERAE----VVSKDFAQQFK 1240
>gi|417885084|ref|ZP_12529243.1| DNA mismatch repair protein MutS [Lactobacillus oris F0423]
gi|341596380|gb|EGS38983.1| DNA mismatch repair protein MutS [Lactobacillus oris F0423]
Length = 884
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 175/317 (55%), Gaps = 38/317 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTAS 762
P+ + + L A+ S+ +E LF++ Q E I A+S +DVL+SFAV +
Sbjct: 494 PELKEKEALILGAQEKSVALEYDLFVKIREQVKEQIQRLQKLAQALSELDVLQSFAVVSE 553
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
RP++ N G L+IK HP G VPND+ +G+D+D
Sbjct: 554 --DYHFVRPIM------------NSGHQLQIKDGRHPVVEKFMGHQEYVPNDVQMGDDTD 599
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP L + D IFTR+GA D +
Sbjct: 600 -----ILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPASRAELPIFDQIFTRIGAADDL 654
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++GESTF+VE E + L AT SL++ DE+GRGT+T+DG A+A A+ + + + +
Sbjct: 655 ISGESTFMVEMMEANNALSHATDRSLILFDEIGRGTATYDGMALAQAIIEYVHQHVRAKT 714
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT + P + H+ K+ ELVFL+++++G +SYG+
Sbjct: 715 LFSTHYHELTSLEETLPRLKNVHVGATEKNG---------ELVFLHKVSAGPADKSYGIH 765
Query: 1002 VAVMAGVPQKVVEAASH 1018
VA +AG+P +++ A
Sbjct: 766 VAKLAGMPAPLLKRADQ 782
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 161/377 (42%), Gaps = 52/377 (13%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKQTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNEDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ ++ V+ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVESYVDVLIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G +L AI + DN + A+ D + + ++ S + L+
Sbjct: 118 NGDQARQNNYLAAISQA----DNQ---FNLAYTDLSTGELKTTSL---GSVEGVINELIN 167
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ------- 495
+ KEV+ E EA A K + S + L+ T+ L SE+ L Q
Sbjct: 168 LQSKEVVGE------EALPARLKAALDSRHILLSQQ---TEILKRSEISYLTQDLTAAGQ 218
Query: 496 --LNGYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDV--LRNGDILPYKV 550
+ G K MQ I + + I H S+ L+ + LR+G
Sbjct: 219 RHVVGLLVSYLLTTQKRSLAHMQRAIAYQPSSFMKIDHYSKTNLELMTNLRSGK------ 272
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
R + LD T+ G RLL+ W+ PL D I R D V L+ + +
Sbjct: 273 -----RQGTLSWLLDETKTAMGSRLLKRWLDRPLIDPTAIKERQDKVAELLDHYFERSNL 327
Query: 611 AQYLRKLPDLERLLGRV 627
+ L K+ DLERL GRV
Sbjct: 328 QEELIKVYDLERLAGRV 344
>gi|401840373|gb|EJT43216.1| MSH2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 964
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 171/315 (54%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P N HP ++
Sbjct: 616 VLAHLDVISSFAHTSSYAPIPYIRPKLHPMDSERKTHLVNSR---------HPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + ++I C LFATH+H LT+ P+V H+ + NS D+++ L
Sbjct: 783 WAIAEHIADKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNSNEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTTNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/361 (21%), Positives = 143/361 (39%), Gaps = 77/361 (21%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ V G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCVIGIAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNPNSNTEIQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + T+F + L++L G S P +SK
Sbjct: 212 KVINVLDRCECVVTL---LRNTEFSEKDVELDLIKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +++ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHRL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ I R D+V+YL
Sbjct: 319 NTLAVSGFTNAGNTGKITSLFHLLNHCRTNAGVRLLNEWLKQPLTNIDEITKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ +L +PD+ RL ++ R + + KK+ + V +F S +
Sbjct: 379 IDQIELRQMLTTDFLPMIPDIRRLTKKLNKRGSLEDVLKIYQFSKKI-PEIVNLFNSFL- 436
Query: 660 GLRIAMDLLMLMHKEGHIIPSLSRI----FKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQ 715
+EG + SL + + P+ + L KF E +D D +
Sbjct: 437 -------------EEGSLAESLKELVCSTWLAPLSHHVEPLSKFEEMVETTVDLDAYEEN 483
Query: 716 N 716
N
Sbjct: 484 N 484
>gi|261414600|ref|YP_003248283.1| DNA mismatch repair protein MutS [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371056|gb|ACX73801.1| DNA mismatch repair protein MutS [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 879
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 167/297 (56%), Gaps = 34/297 (11%)
Query: 736 EKASQWSE----VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
E+ + W + AI+ +D L SFA A + P V + G +
Sbjct: 547 ERVNSWRAELQGIADAIARVDSLYSFARAARKYNYVC-----------PEVFEGTG---I 592
Query: 792 KIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
+I+G +HP + N L VPND+ L D R +L+TGPNM GKST LR T L V+
Sbjct: 593 EIRGGFHPVIVAVNPDLNFVPNDVTLSPDGT----RLMLITGPNMAGKSTYLRQTGLIVL 648
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+AQ+GCFVP E + + D IFTR+GA+DR+ G STF+VE ETA++L+ AT SLV+L
Sbjct: 649 MAQIGCFVPAESARIGVVDRIFTRVGASDRLSRGLSTFMVEMIETANILRNATPHSLVLL 708
Query: 911 DELGRGTSTFDGYAIAYAVFRQL-VERINCRL-LFATHYHPLTKEFASHPHVTLQHMACA 968
DE+GRGTSTFDG +IA+A+ L E L LFATHYH LT S H +A
Sbjct: 709 DEIGRGTSTFDGLSIAWAIVETLHSEPARMALTLFATHYHELTGLVESLEHAGNFQVAVQ 768
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
KGD+ L FL+++ GAC SYG+ VA MAG+P VV A L ++K
Sbjct: 769 --------EKGDK-LTFLHKILEGACDSSYGIHVAEMAGLPPNVVRRARKILLRLEK 816
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY+ +K + +LFF++G F+EL+E DA I K L +T G G
Sbjct: 8 QQYYEIKKENPGCILFFRMGDFFELFEDDAVIASKILGLTLTSRNNGASGATPLCGFPHH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
+ V K+VA GY++ EQ+E + AK ++ R +V +++ T ++
Sbjct: 68 AAERYVPKMVAAGYRIAICEQVEDPKLAKG-----IVKRDIVEIISAGTAMN 114
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT+ G R L+ W+ HPL V+ I R + V L++N + + + L + D+ERL
Sbjct: 302 LDFTVTAMGGRTLKDWVSHPLIAVDRIREREEAVGELVQNPVALDELKESLTSILDMERL 361
Query: 624 LGRV 627
+GRV
Sbjct: 362 MGRV 365
>gi|347534571|ref|YP_004841241.1| DNA mismatch repair protein mutS [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504627|gb|AEN99309.1| DNA mismatch repair protein mutS [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 873
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 175/318 (55%), Gaps = 37/318 (11%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+ E + + E ++ + ++ IS IDVL+SFA + Q P
Sbjct: 514 LEYEIFAKIREQIKQQIPRVQKLASGISSIDVLQSFATISERE-----------QFVKPK 562
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
D +LK+ HP G VPND+L+ D + LL+TGPNM GKST
Sbjct: 563 FNHDK---LLKLINARHPVVEQVMGSQKYVPNDVLM-----DAKTKILLITGPNMSGKST 614
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R L VILAQ+GCFVP E V+ + D IFTR+GA D +++G+STF+VE E +Q
Sbjct: 615 YMRQLALIVILAQMGCFVPAESAVMPIFDQIFTRIGAADDLISGKSTFMVEMKEANQAIQ 674
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT++SL++ DELGRGTST+DG A+A A+ + ++++ + +F+THYH LT +
Sbjct: 675 NATENSLILFDELGRGTSTYDGVALAQAIIEYIHDKVHAKTMFSTHYHELTGLSDELKQL 734
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ S+ D LVFL+++ GA +SYG+ VA +AG+P +
Sbjct: 735 KNVHVGA---------SEKDGHLVFLHKVLDGAADKSYGINVAQLAGLPTDL-------- 777
Query: 1021 LAMKKSIGESFKSSEQRS 1038
LA +S+ + F+++++ +
Sbjct: 778 LARAQSVLDHFENNDEET 795
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 55/379 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
KK +A +QY +K QY D LF+++G FYEL+ DA G + L+ +T +
Sbjct: 3 KKNTAMMEQYQKIKDQYPDAFLFYRIGDFYELFNEDAVKGAQLLELTLTARNHKAENPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ ++ LV +GYKV EQ+E + A+ ++ R+++ +VTP T D
Sbjct: 63 MCGVPHKAAQGYIDTLVDQGYKVAICEQVEDPKLAQG-----MVKREVIQLVTPGTQTDN 117
Query: 385 TIGPDAVHLLAIKEGNCGPDN---GSVV-------YGFAFVDCAALRVWVGTINDDASCA 434
DN SVV YGF++++ + + V + D++ A
Sbjct: 118 N-------------SETAKDNNYLASVVYSATLDQYGFSYIELSTGELKVTLL--DSADA 162
Query: 435 ALGALLMQVSPKEVIYENR---GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
L ++ +S KE++ ++ L +K S ++ E + +T+ +
Sbjct: 163 VLNEVI-NLSSKEIVVDDSISTNLIDNFKKLGILISPQNSVDEENGSEIITNIDNELLRL 221
Query: 492 KLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYK 549
L L Y + ++ Q+ S L I H S+ L+ + +R G
Sbjct: 222 SLNVLLSYVAETQKRSLSHIQPARQYQPN-SYLK--IDHNSQYNLELLKNIRTG------ 272
Query: 550 VYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+ G L+ +D T+ G R L+ W+ PL + I R +VE L+ N
Sbjct: 273 ------KKSGTLLWVVDDTKTAMGGRKLKQWVERPLIKQKEIEARQSLVETLLDNYYERN 326
Query: 609 VVAQYLRKLPDLERLLGRV 627
+ + L K+ DLERL GR+
Sbjct: 327 ELREALIKVYDLERLAGRI 345
>gi|300794684|ref|NP_001178886.1| DNA mismatch repair protein Msh3 [Rattus norvegicus]
Length = 1105
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D +AE L L E F E + + ++ +D + S A A G+ RP + + K
Sbjct: 758 VLDCNAEWLDFL-ENFGEHYHTLCKAVDHLATVDCIFSLAKVAK--QGSYCRPTLQEEKK 814
Query: 779 NPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
+ IK HP LGE VPN L +DS+ R +++TGPNM
Sbjct: 815 ------------IIIKNGRHPMIDVLLGEQDQF-VPNSTNLSQDSE----RVMIITGPNM 857
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKS+ ++ L VI+AQ+G +VP E + + D IFTR GA D I G STF+ E T+T
Sbjct: 858 GGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTDT 917
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A ++QKATQ SLVILDELGRGTST DG AIAYA + + LF THY P+ +
Sbjct: 918 AEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 977
Query: 956 SHP-HVTLQHMACAFKSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVP 1009
+P V HM + GD E + FLY++T G SYGL VA +A VP
Sbjct: 978 RYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVP 1037
Query: 1010 QKVVEAASHAA 1020
+++++ A+H +
Sbjct: 1038 REILQKAAHKS 1048
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 172/411 (41%), Gaps = 59/411 (14%)
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
+++Y P E QY +VK + D +L + G Y + DAEI +EL+ L
Sbjct: 184 KSIYTPLEL---------QYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHL 234
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
I + V +LVA+GYKVG ++Q ET+ +A + +SV SRKL +
Sbjct: 235 DH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALY 292
Query: 377 TPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVYGFAFVD 416
T ST + + P D+V +LL I KE G++ +G V
Sbjct: 293 TKSTLIGEDVNPLIRLDDSVNIDEAVTDTSTNYLLCIYEEKENIKDKKKGNISFGIVGVQ 352
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-- 474
A V D AS L + P E++ ++ L + + +R+ +A S +
Sbjct: 353 PATGEVVFDCFQDSASRLELETRTASLQPVELLLPSQ-LSEPTEMLIRRATAVSVGDDRI 411
Query: 475 LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIG-FSALGGLISHLSR 533
M T F + + +++ + S++L V+ + AL +I +L
Sbjct: 412 RVERMNNTHFEYSHAFQTVMEFYAR-ETVDTQGSQSLSGVIHLEKPVICALAAIIRYLKE 470
Query: 534 LMLDDVL-RNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSSG 572
LD VL + + + +R++G TL LD TS G
Sbjct: 471 FNLDKVLSKPENFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTRGSLLWVLDHTKTSFG 530
Query: 573 KRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
+R L+ W+ PL + IN RLD + + L S V + LRKLPD+ER
Sbjct: 531 RRKLKKWVTQPLLKLRDINARLDAISDVLHSESSVFEQIENLLRKLPDVER 581
>gi|15639319|ref|NP_218768.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025561|ref|YP_001933333.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
SS14]
gi|378972827|ref|YP_005221431.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973894|ref|YP_005222500.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378974956|ref|YP_005223564.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981803|ref|YP_005230108.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421853|ref|YP_005631212.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
str. Chicago]
gi|408502210|ref|YP_006869654.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|6093453|sp|O83348.1|MUTS_TREPA RecName: Full=DNA mismatch repair protein MutS
gi|238689318|sp|B2S2S5.1|MUTS_TREPS RecName: Full=DNA mismatch repair protein MutS
gi|3322604|gb|AAC65315.1| DNA mismatch repair protein (mutS) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018136|gb|ACD70754.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
SS14]
gi|291059719|gb|ADD72454.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
str. Chicago]
gi|374677150|gb|AEZ57443.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678220|gb|AEZ58512.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679289|gb|AEZ59580.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680354|gb|AEZ60644.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
DAL-1]
gi|408475573|gb|AFU66338.1| DNA mismatch repair protein MutS [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 900
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 167/288 (57%), Gaps = 26/288 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA-LGENG 806
++ +DVL+SFA A++ G P +D L+I G HP L
Sbjct: 555 VAQLDVLQSFA-HAALQHGW----------SQPVFIKDGA---LRITGGRHPVVELHLPS 600
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
G VPND+ L LPR L+TGPNM GKST LR T L ++AQ+G FVP E L+
Sbjct: 601 GEFVPNDLTLSSSEHAVLPRFALITGPNMAGKSTFLRQTALICLIAQVGSFVPAEKAELT 660
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IF R+GA D + GESTFLVE +ETA +L+ AT+DSLVI+DE+GRGT+T DG +IA
Sbjct: 661 PVDRIFCRVGAADNLARGESTFLVEMSETAHILRAATRDSLVIMDEVGRGTATEDGLSIA 720
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
AV L+ + + LFATHYH L++ +HP L+H+ + + D +VFL
Sbjct: 721 QAVSEYLLHHVRAKTLFATHYHELSR--LAHPQ--LEHLKL-------DVLETDNTIVFL 769
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
++T G+C SYG+ VA +AG+P+ V+ A +++ G + ++S
Sbjct: 770 KKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQRAGSAPRAS 817
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 155/380 (40%), Gaps = 58/380 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +++Q+ D +LFF++G FYE+++ DA H +TL+ G+
Sbjct: 12 RQYHAIRAQHPDAVLFFRLGDFYEMFDSDAL--HVSTLLGLTLTKRNGTPMCGVPVHTAR 69
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G KV EQ+ + + RK++ +++P T V D +
Sbjct: 70 THIARLLKHGKKVALCEQVSHPVPGE------LTQRKVIEIISPGTAVEDDFLSQGFSQY 123
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
LA C D F++++ + ++ + + AL +V P EV+
Sbjct: 124 LATV---CASD---ATVAFSYLEVSTGAFFITSFPRAEAADALQKEFGRVQPSEVLL--- 174
Query: 454 GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA----SEVKKLVQLNGYFNGSSSPWSK 509
+ LR +A L L P + T DA K +L+ F ++
Sbjct: 175 -----SASVLRSLPELAAILSLYPRLVRTTGADALFNPEHTKN--RLHHCFR------TR 221
Query: 510 ALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD--------- 558
L+ ++ H +A G LI++L + I Y ++ D + +D
Sbjct: 222 NLDCLTLLPHSPDLAAAGALIAYLEETTRHPLSHVSAITRYHIH-DFVEIDDATRKNLEI 280
Query: 559 ---------GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+L+ L+ T+ G RLLR W+ HPL+ E I RL V + ++
Sbjct: 281 LQNLHDSTHAHSLFETLNYTHTAMGTRLLRYWLHHPLRSQEEIQKRLSAVVFFHHRPHIL 340
Query: 608 MVVAQYLRKLPDLERLLGRV 627
+ L + D+ERL+ RV
Sbjct: 341 KTLRATLSCVRDVERLVARV 360
>gi|312870460|ref|ZP_07730580.1| DNA mismatch repair protein MutS [Lactobacillus oris PB013-T2-3]
gi|311094017|gb|EFQ52341.1| DNA mismatch repair protein MutS [Lactobacillus oris PB013-T2-3]
Length = 884
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 175/317 (55%), Gaps = 38/317 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTAS 762
P+ + + L A+ S+ +E LF++ Q E I A+S +DVL+SFAV +
Sbjct: 494 PELKEKEALILGAQEKSVALEYDLFVKIREQVKEQIQRLQKLAQALSELDVLQSFAVVSE 553
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
RP++ N G L+IK HP G VPND+ +G+D+D
Sbjct: 554 --DYHFVRPIM------------NSGHQLQIKDGRHPVVEKFMGHQEYVPNDVQMGDDTD 599
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP L + D IFTR+GA D +
Sbjct: 600 -----ILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPASRAELPIFDQIFTRIGAADDL 654
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++GESTF+VE E + L AT SL++ DE+GRGT+T+DG A+A A+ + + + +
Sbjct: 655 ISGESTFMVEMMEANNALSHATDRSLILFDEIGRGTATYDGMALAQAIIEYVHQHVRAKT 714
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT + P + H+ K+ ELVFL+++++G +SYG+
Sbjct: 715 LFSTHYHELTSLEETLPRLKNVHVGAMEKNG---------ELVFLHKVSAGPADKSYGIH 765
Query: 1002 VAVMAGVPQKVVEAASH 1018
VA +AG+P +++ A
Sbjct: 766 VAKLAGMPVPLLKRADQ 782
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 163/372 (43%), Gaps = 42/372 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKQTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNEDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ ++ V+ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVESYVDVLIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G +L AI + DN + A+ D + + ++ S + L+
Sbjct: 118 NGDQARQNNYLAAISQA----DNQ---FNLAYTDLSTGELKTTSL---GSVEGVINELIN 167
Query: 443 VSPKEVIYENRGLCKEAQKALRK----FSAGSAALELTPAMAVTDFLDASEVKKLVQLNG 498
+ KEV+ E L + AL S L+ + +T L A+ + +V L
Sbjct: 168 LQSKEVVGEG-DLPARLKTALDSRHILLSQQPEILKRSEISYLTQDLTAAGQRHVVGLLV 226
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDV--LRNGDILPYKVYRDCL 555
+ ++ S A MQ I + + I H S+ L+ + LR+G
Sbjct: 227 SYLLTTQKRSLAH---MQRAIAYQPSSFMKIDHYSKTNLELMTNLRSGK----------- 272
Query: 556 RMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
R + LD T+ G RLL+ W+ PL D I R D V L+ + + + L
Sbjct: 273 RQGTLSWLLDETKTAMGSRLLKRWLDRPLIDPAAIKERQDKVAELLDHYFERSNLQEELI 332
Query: 616 KLPDLERLLGRV 627
K+ DLERL GRV
Sbjct: 333 KVYDLERLAGRV 344
>gi|423335913|ref|ZP_17313664.1| DNA mismatch repair protein MutS [Lactobacillus reuteri ATCC 53608]
gi|337729116|emb|CCC04239.1| DNA mismatch repair protein MutS [Lactobacillus reuteri ATCC 53608]
Length = 881
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 164/279 (58%), Gaps = 29/279 (10%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
++ ++ ++ +DVL+SFAV S H + P+ N G VLKIK H
Sbjct: 530 TRLQKLAQQLAELDVLQSFAVV----SEDYH--FVRPEM--------NTGHVLKIKDGRH 575
Query: 799 PFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
P G VPND+L+GED+D LL+TGPNM GKST +R L ++AQ+GCF
Sbjct: 576 PVVEKFMGHQEYVPNDVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQIGCF 630
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L + D +FTR+GA D +++GESTF+VE E + L AT SL++ DE+GRGT
Sbjct: 631 VPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEIGRGT 690
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
+T+DG A+A A+ + + + + LF+THYH LT L++ K+ +
Sbjct: 691 ATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELT---------ALENSLARLKNVHVGAT 741
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ D ELVFL+++++G +SYG+ VA +AG+P +++ A
Sbjct: 742 EKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSSLLKRA 780
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 165/378 (43%), Gaps = 54/378 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ +++ ++ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G D +L AI N ++ A+ D + + ++N+ L+
Sbjct: 118 NGEQARDNNYLAAISAQNG-------LFSIAYTDLSTGELKTTSLNNANDAV---NELVN 167
Query: 443 VSPKEVI------------YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
+ KEV+ ++ R + + Q + K + S + D D ++
Sbjct: 168 LQSKEVVVDGELPVEITTQFKQRNILQSHQPTVLKNAEISYLTQ--------DLEDKAQQ 219
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDVLRNGDILPYK 549
+ L Y + ++L + +Q I + + I H S+ L +++RN
Sbjct: 220 HVVALLVSYL---LTTQKRSLAH-LQKAIAYQPSSFMKIDHYSKTNL-ELMRN------- 267
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R R LD T+ G RLL+ WI PL + I+ R D V+ L+ +
Sbjct: 268 -MRSGKRQGTLAWLLDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSN 326
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL GRV
Sbjct: 327 LQQELIKVYDLERLAGRV 344
>gi|197097574|ref|NP_001125043.1| DNA mismatch repair protein Msh3 [Pongo abelii]
gi|55726784|emb|CAH90153.1| hypothetical protein [Pongo abelii]
Length = 1023
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 178/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 686 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 740
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 741 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 788
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 789 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 848
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 849 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 908
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM ++ G +E V FLY++T G SYGL VA +A VP ++
Sbjct: 909 HQVGNYHMGFLVSEDASKLDPGTEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 968
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 969 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1000
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 188/443 (42%), Gaps = 75/443 (16%)
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
+ + E L + + AN+R +++Y P E QY +K Q+ D +L
Sbjct: 92 SNTSHENLQKTASKPANKR--------SKSIYTPLEL---------QYIEMKQQHKDAVL 134
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
+ G Y + DAEI +EL+ L I + V +LVA+GYKVG
Sbjct: 135 CVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGV 192
Query: 350 IEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------ 391
++Q ET+ +A + +S+ SRKL + T ST + + P DAV
Sbjct: 193 VKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTS 252
Query: 392 HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+LL I KE G++ G V A V + D AS + L + + P E+
Sbjct: 253 YLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVEL 312
Query: 449 IYENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKK 492
+ + L ++ + + + ++ S E + A AVT+F D ++K
Sbjct: 313 LLPS-ALSEQTEALIHRTTSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKG 371
Query: 493 LVQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
++G N + + K LE ++ F L + ++ + LR
Sbjct: 372 SQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLR 429
Query: 542 NGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EY 599
N +IL + ++ G L+ LD TS G+R L+ W+ PL + IN RLD V E
Sbjct: 430 NLEILQNQT---DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 486
Query: 600 LMKNSEVVMVVAQYLRKLPDLER 622
L S V + +LRKLPD+ER
Sbjct: 487 LHSESSVFGQIENHLRKLPDIER 509
>gi|429204954|ref|ZP_19196235.1| DNA mismatch repair protein MutS [Lactobacillus saerimneri 30a]
gi|428146816|gb|EKW99051.1| DNA mismatch repair protein MutS [Lactobacillus saerimneri 30a]
Length = 871
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 33/301 (10%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
T+L + L E ++ + + H ++ +DVL+SFAV + + RP
Sbjct: 512 TELQYQLFVALREQIKDQIKRLQRLAHGLAQLDVLQSFAVISE--EAHLTRP-------- 561
Query: 780 PAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
Q G L++ G WHP +G+ VPNDI + D LL+TGPNM
Sbjct: 562 ----QFTDGHDLQVTGGWHPVVEKVIGKQSY--VPNDINMPASLD-----ILLITGPNMS 610
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKST +R L V++AQ+GCFVP L L D IFTR+GA D +++GESTF+VE E
Sbjct: 611 GKSTYMRQLALTVVMAQIGCFVPATKATLPLFDQIFTRIGAADDLISGESTFMVEMMEAN 670
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
L++AT +SL++ DE+GRGT+T+DG A+A A+ + + I+ + LF+THYH LT S
Sbjct: 671 DALRQATPNSLILFDEIGRGTATYDGMALAQAIIEYVHDHIHAKTLFSTHYHELTALEES 730
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P + H+ A + N GD LVFL+++ G +SYG+ VA +AG+P ++E A
Sbjct: 731 LPALKNIHVG-AMEQN------GD--LVFLHKMQDGPADKSYGIHVAKLAGMPTSLLERA 781
Query: 1017 S 1017
+
Sbjct: 782 N 782
Score = 90.9 bits (224), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 161/387 (41%), Gaps = 68/387 (17%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGK 322
A K ++ KQY +K Y D LF+++G FYE++ DA G + L+ +T +G
Sbjct: 2 AKKSVTPMMKQYLEIKQDYPDAFLFYRIGDFYEMFYDDAIKGAQILELTLTQRNKNGQEH 61
Query: 323 CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
G+ + ++ LV +GYKV EQLE AK ++ R ++ ++TP T +
Sbjct: 62 IPMCGVPHHAASNYIDILVEKGYKVAICEQLEDPSTAKG-----MVKRGVIQLITPGTLM 116
Query: 383 DGTIGPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
+ G + +L AI + + YGFA+VD + + + D A+ L
Sbjct: 117 EQKAGENKSNNYLTAIHQTDDQ-------YGFAYVDLSTGEMRSTVLKD---LTAVENEL 166
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
+ KE++ + P AV D L K++Q
Sbjct: 167 VATRTKEIVIDESVTA--------------------PTRAVIDKL------KILQSQQNT 200
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD-- 558
S +S +N + D A+ L+ +L+ + + Y+ D LR+D
Sbjct: 201 VEQRSEFSYVSQN-LTADAEIQAVKHLLMYLTVTQKRSLAHLQQSVHYQP-ADFLRLDRY 258
Query: 559 -----------------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
G L+ LD+ T+ G RLL+ WI PL + + I R +V+ L
Sbjct: 259 AKRNLELISNSRTGKKSGTLLWLLDATKTAMGGRLLKQWIERPLLERQQIEQRQALVQLL 318
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ N + + L + DLERL GRV
Sbjct: 319 LDNFLERNTIQEELTHVYDLERLAGRV 345
>gi|121998436|ref|YP_001003223.1| DNA mismatch repair protein MutS [Halorhodospira halophila SL1]
gi|189083205|sp|A1WXK9.1|MUTS_HALHL RecName: Full=DNA mismatch repair protein MutS
gi|121589841|gb|ABM62421.1| DNA mismatch repair protein MutS [Halorhodospira halophila SL1]
Length = 868
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 140/228 (61%), Gaps = 14/228 (6%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P ++I+G HP VPND+ L D R LL+TGPNMGGKST +R T L
Sbjct: 583 PGVRIEGGRHPVVEQALDAPFVPNDVRL-----DNRRRMLLITGPNMGGKSTYMRQTALI 637
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
+LA G FVP + VL D IFTR+GA D + +G STF+VE TETA++L AT +SLV
Sbjct: 638 ALLAYAGAFVPAQRAVLGPIDRIFTRIGAADDLASGRSTFMVEMTETANILHNATAESLV 697
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DE+GRGTSTFDG A+A+A +L RI LFATHY +T HP V H+ A
Sbjct: 698 LMDEIGRGTSTFDGLALAWATAERLATRIRAFTLFATHYFEMTALEQIHPGVVNVHLEAA 757
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ + +VFL+ + G +SYGLQVA +AGVPQ+V++AA
Sbjct: 758 ---------EHGERIVFLHAVRDGPANQSYGLQVAALAGVPQEVLKAA 796
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 158/378 (41%), Gaps = 61/378 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+Q+ +K++Y + LLF+++G FYEL+ DAE K LD ITL+ G+ I +G+
Sbjct: 21 RQFLRIKAEYPETLLFYRMGDFYELFYEDAERAAKLLD--ITLTTRGESAGAPIPMAGVP 78
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQ-AKARHTNSVISRKLVNVVTPST-TVDGTIGPDAV 391
+VE +AR ++G E + EQ T + R++V VVTP T T D + +
Sbjct: 79 VQSVESYLARLVRLG--ESVAICEQIGDPNTTKGPVERQVVRVVTPGTLTEDALLEERSA 136
Query: 392 HLL-AIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+LL A+ G G +G A ++ ++ R V D AL A L ++ P E+I
Sbjct: 137 NLLTAVAPGPKG------RFGVASLELSSGRFSVLEAPDQ---EALTAELERLRPAELIL 187
Query: 451 EN-------RGLCKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVKKLVQLNG--- 498
+ G C ++ F SA L + D A E+ V G
Sbjct: 188 PDDDQTPAPEGGCVAQRRPSWHFEYDSARRLLLRQLGTHDLSGFGAEELHAPVTAAGALL 247
Query: 499 -YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR---LMLDDVLRNGDILPYKVYRDC 554
Y N + AL +V G ++ SR + +D R + +
Sbjct: 248 QYLNETQ---RAALPHV-----------GALTVESRDEAITIDAASRRNLEIEHN----- 288
Query: 555 LRMDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
+ G T + +D+ VT+ G RLLR W+ PL+ E I
Sbjct: 289 --LSGGTEHTLASVIDTSVTAMGGRLLRRWLQRPLRRRETIAA--RHAAVAALADGAFAD 344
Query: 610 VAQYLRKLPDLERLLGRV 627
V L D+ER+L RV
Sbjct: 345 VRSTLEGCADVERILARV 362
>gi|148543760|ref|YP_001271130.1| DNA mismatch repair protein MutS [Lactobacillus reuteri DSM 20016]
gi|184153166|ref|YP_001841507.1| DNA mismatch repair protein MutS [Lactobacillus reuteri JCM 1112]
gi|227363260|ref|ZP_03847392.1| DNA mismatch repair protein MutS [Lactobacillus reuteri MM2-3]
gi|325682132|ref|ZP_08161650.1| DNA mismatch repair protein HexA [Lactobacillus reuteri MM4-1A]
gi|189083181|sp|A5VIW9.1|MUTS_LACRD RecName: Full=DNA mismatch repair protein MutS
gi|229620050|sp|B2G6E5.1|MUTS_LACRJ RecName: Full=DNA mismatch repair protein MutS
gi|148530794|gb|ABQ82793.1| DNA mismatch repair protein MutS [Lactobacillus reuteri DSM 20016]
gi|183224510|dbj|BAG25027.1| DNA mismatch repair protein MutS [Lactobacillus reuteri JCM 1112]
gi|227071716|gb|EEI10007.1| DNA mismatch repair protein MutS [Lactobacillus reuteri MM2-3]
gi|324978776|gb|EGC15725.1| DNA mismatch repair protein HexA [Lactobacillus reuteri MM4-1A]
Length = 881
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 164/279 (58%), Gaps = 29/279 (10%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
++ ++ ++ +DVL+SFAV S H + P+ N G VLKIK H
Sbjct: 530 TRLQKLAQQLAELDVLQSFAVV----SEDYH--FVRPEM--------NTGHVLKIKDGRH 575
Query: 799 PFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
P G VPND+L+GED+D LL+TGPNM GKST +R L ++AQ+GCF
Sbjct: 576 PVVEKFMGHQEYVPNDVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQIGCF 630
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L + D +FTR+GA D +++GESTF+VE E + L AT SL++ DE+GRGT
Sbjct: 631 VPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEIGRGT 690
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
+T+DG A+A A+ + + + + LF+THYH LT L++ K+ +
Sbjct: 691 ATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELT---------ALENSLARLKNVHVGAT 741
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ D ELVFL+++++G +SYG+ VA +AG+P +++ A
Sbjct: 742 EKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSSLLKRA 780
Score = 99.4 bits (246), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 166/378 (43%), Gaps = 54/378 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ +++ ++ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G D +L AI G G V+ A+ D + + ++N+ L+
Sbjct: 118 NGEQARDNNYLAAIS-GQNG------VFSIAYTDLSTGELKTTSLNNANDAV---NELVN 167
Query: 443 VSPKEVI------------YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
+ KEV+ ++ R + + Q + K + S +T LD
Sbjct: 168 LQSKEVVVDGELPVEITTQFKQRNILQSHQPTVLKNAEIS---------YLTQDLDDQAQ 218
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDVLRNGDILPYK 549
+ +V L + ++ S A MQ I + + I H S+ L +++RN
Sbjct: 219 QHVVALLVSYLLTTQKRSLAH---MQKAIAYQPSSFMKIDHYSKTNL-ELMRN------- 267
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R R LD T+ G RLL+ WI PL + I+ R D V+ L+ +
Sbjct: 268 -MRSGKRQGTLAWLLDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSN 326
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL GRV
Sbjct: 327 LQQELIKVYDLERLAGRV 344
>gi|317485559|ref|ZP_07944436.1| DNA mismatch repair protein MutS [Bilophila wadsworthia 3_1_6]
gi|316923239|gb|EFV44448.1| DNA mismatch repair protein MutS [Bilophila wadsworthia 3_1_6]
Length = 903
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 154/259 (59%), Gaps = 23/259 (8%)
Query: 781 AVRQDNGGPVLK------IKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGP 833
AVR + PVL I+ HP G G VPND+ + ED R LL+TGP
Sbjct: 590 AVRHNWSRPVLHTGQSITIREGRHPVVEGIIGEAAFVPNDLHMDEDR-----RLLLITGP 644
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NM GKST+LR T L +LAQ+G FVP L L D IF+R+GA+D + G+STF+VE
Sbjct: 645 NMAGKSTVLRQTALICLLAQMGSFVPAREAQLGLCDRIFSRVGASDNLAQGQSTFMVEMM 704
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI--NCRLLFATHYHPLT 951
ETA +L++AT+ SLVILDE+GRGTSTFDG A+A+AV +L R + R LFATHYH LT
Sbjct: 705 ETARILRQATKRSLVILDEIGRGTSTFDGLALAWAVAEELARRAGGSIRTLFATHYHELT 764
Query: 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
P V ++A + + E+VFL RL G SYG++VA +AGVPQ
Sbjct: 765 ALEGKIPGVHTMNIAI---------REWNGEIVFLRRLIPGPSDRSYGIEVARLAGVPQP 815
Query: 1012 VVEAASHAALAMKKSIGES 1030
VV+ A ++++ G S
Sbjct: 816 VVQRAREILAQLEQNKGSS 834
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 168/388 (43%), Gaps = 62/388 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
+++ +QY +K Y D LLF+++G FYEL+ DAE+ +EL +I L+ + I
Sbjct: 26 RLTPMFEQYLRIKEGYPDALLFYRMGDFYELFFEDAEVASREL--QIALTSRNPNAEAPI 83
Query: 329 SESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV- 382
G+ + V +L+ +GYK+ +Q+E AK ++ R + V TP T V
Sbjct: 84 PMCGVPWHAAEGYVSQLLNKGYKIAFCDQVEDPRAAKG-----LVERAVTRVYTPGTAVE 138
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D ++ P L + D G GFA+VD + W G L +
Sbjct: 139 DVSLEPKGHTYLGALFWSADTDRG----GFAWVDVST-GYWAGL--HVKKSQELWQWAQK 191
Query: 443 VSPKEVIYENRG-----LCKEAQKALR-----KFSAGSAALELTPAMAVTDF--LDASEV 490
++P+E++ L +A+R F +A + A +V + L
Sbjct: 192 IAPRELLLPEDADVPASLHLTDIQAVRVPLRSHFDYKRSAERVLAAQSVAELGALGLEGR 251
Query: 491 KKLVQ----LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL-RNGDI 545
K+LVQ L Y + +K L D+G L++DDV RN
Sbjct: 252 KELVQACGALLAYLEQTQMQDTKHLAPFEPLDLG-----------QHLLIDDVTERN--- 297
Query: 546 LPYKVYRDCLRMDGQ----TL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+++R R+DG+ TL +DS T G RLL + +P +++ I D + +
Sbjct: 298 --LELFR---RLDGRKGVGTLRHVIDSTQTPMGGRLLEERLRNPWRELAPIQETQDAIAW 352
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L+ + E + + L + DLERL R+
Sbjct: 353 LIAHPENRKKLRETLSGVYDLERLSTRI 380
>gi|317051765|ref|YP_004112881.1| DNA mismatch repair protein MutS [Desulfurispirillum indicum S5]
gi|316946849|gb|ADU66325.1| DNA mismatch repair protein MutS [Desulfurispirillum indicum S5]
Length = 838
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 169/288 (58%), Gaps = 35/288 (12%)
Query: 736 EKASQWSEVI----HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
++ QW + I +I+CIDVL +FA A + + P + D PVL
Sbjct: 505 QQVLQWFDPIINAARSIACIDVLSTFAEVA-----------VAYDYRKPRISPD---PVL 550
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
++GL HP + V ND++L D + +++TGPNM GKST +R LAVI+
Sbjct: 551 HVQGLRHPVIEKLSVEPFVANDLVLNTDDQ----QLMIITGPNMAGKSTYMRQAALAVIM 606
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+GCFVP ++ L D IFTR+GA+D ++ G+STF+VE +ETA++L AT++SL+++D
Sbjct: 607 AQMGCFVPATEALIGLCDRIFTRVGASDNLVEGKSTFMVEMSETANILHHATRNSLIVID 666
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTK-EFASHPHVTLQHMACA 968
E+GRGTSTFDG +IA++V L + I R LFATH+H LT E H V +
Sbjct: 667 EVGRGTSTFDGISIAWSVAEHLSSQGPIGARTLFATHFHELTDLERELHGVVNFHILI-- 724
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
EN+ L FL ++ GA P+SYG++VA +A +P V+E A
Sbjct: 725 ----RENHGT----LHFLRKVAPGAAPKSYGIEVARLAQIPLSVIERA 764
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 162/370 (43%), Gaps = 60/370 (16%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS----GVGKCRQ 325
++ +Q+ +K QY D +LFF++G FYEL+ DA + + L KITL+ G K
Sbjct: 5 LTPMMRQFMEIKDQYPDAMLFFRMGDFYELFGEDAVLASEIL--KITLTSRDKGEKKTPM 62
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV--D 383
G+ ++ + KLV G+K +QLE QAK ++ R + +VTPST + D
Sbjct: 63 AGVPHHALEGYLYKLVKAGHKAVICDQLEDPRQAKG-----IVKRGVTRIVTPSTIIHHD 117
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + P + LA G+ D ++ + LR + DD L +
Sbjct: 118 G-VDPSQHNFLAALHGD-DDDICIALWDLSTASVKLLRSNREQLADD---------LRRY 166
Query: 444 SPKEVIYENRGLCKEAQ--KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
E + GL ++ Q +A ++ +A A E AMA+T + Y
Sbjct: 167 PVSEYLVCRDGLLEQGQLVQAPQQSAADFARFEHGHAMALT------------MASAYLE 214
Query: 502 GSS--SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG 559
G+ + +++E++ ++ L++D+ + ++ R+
Sbjct: 215 GTQLRTVRPRSIEDLSAREL--------------LLMDE----NTCVNLELLRNMGGGRE 256
Query: 560 QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
TL LD T+ G RLLR W+ HPL I RLD VE L + + L ++
Sbjct: 257 HTLLWVLDRTRTAMGGRLLRDWMRHPLYQQHAIEQRLDAVELLAGQYTLTGSIRDTLGRI 316
Query: 618 PDLERLLGRV 627
DLERL+ R+
Sbjct: 317 HDLERLINRI 326
>gi|381180540|ref|ZP_09889379.1| DNA mismatch repair protein MutS [Treponema saccharophilum DSM 2985]
gi|380767528|gb|EIC01528.1| DNA mismatch repair protein MutS [Treponema saccharophilum DSM 2985]
Length = 881
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 165/286 (57%), Gaps = 27/286 (9%)
Query: 744 VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803
V H I+ +DV+ + A +A ++ RP++ + G V ++ G HP
Sbjct: 557 VAHKIAYVDVVSALASSAVLNRWV--RPVV------------DDGDVFRVVGGRHPVVEA 602
Query: 804 E-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
G VPNDI++ D L+ TGPNM GKST LR L ++AQ+G +VP E
Sbjct: 603 HLPSGEFVPNDIVVSSAGDGSASFGLI-TGPNMAGKSTYLRQNALLALMAQIGSYVPAEE 661
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
+ + D IF R+GA+D + GESTFLVE TETA +L+ AT+ SLVI+DE+GRGTST DG
Sbjct: 662 AHVGVVDRIFCRVGASDNLARGESTFLVEMTETAYILRGATRKSLVIMDEVGRGTSTEDG 721
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
+IA+AV L+ I C+ LFATHYH LT+ HP + L M + GD+
Sbjct: 722 LSIAWAVSEYLLNTIQCKTLFATHYHELTR--MVHPSLKLMCM--------DVLEDGDK- 770
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
+VFL ++ GA SYG+ VA +AG+PQ V++ AS +++ S G
Sbjct: 771 VVFLRKMKEGASENSYGIHVASLAGIPQTVIKRASEILSSLQDSAG 816
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 157/378 (41%), Gaps = 55/378 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +K Y D +LFF+VG FYE++ DA + L+ +TL+ G GI
Sbjct: 25 RQYQEMKETYKDEVLFFRVGDFYEMFNDDAVEISRLLN--LTLTHRGSQPMCGIPY---- 78
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLL 394
A ++ +AR + G+ ++ EQ + RK+V V+TP T VDG D + +
Sbjct: 79 HASKRYIARLLRCGK--RVAVCEQVSEPTGKGLTERKVVEVITPGTAVDG----DYIEGV 132
Query: 395 AIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRG 454
A C G GFAFVD + + + + L + P+E+I
Sbjct: 133 ANNFLACLFVRGQSA-GFAFVDVTTADFFATSWSVSDMEESFSKELGRAHPRELIL---- 187
Query: 455 LCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS--EVKKLVQLNGYFNGSSSPWSKALE 512
++LR+ + L +A + + D + K +L F G+ + S +L
Sbjct: 188 -----PESLRRNDTVQRLISLDGGIACSYYPDWNFDAEKSFGRLCAQF-GTKNLKSFSLS 241
Query: 513 NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC------------------ 554
+ G L+ ++ ++ + I KVY+D
Sbjct: 242 ELSPE---VPPAGFLLDYVQKMTITATPHINSI---KVYKDSQFVMMDDSSRRNLEIVAN 295
Query: 555 LRMDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
LR DG + + T+ G+RLLRSW+ +PL+ V I R D V + N +
Sbjct: 296 LR-DGSAQFSLLEVIARTRTAMGRRLLRSWLLYPLRSVGDIKMRQDDVSFFFGNGGMRDD 354
Query: 610 VAQYLRKLPDLERLLGRV 627
L + D+ERL GR+
Sbjct: 355 AESLLSSILDVERLAGRI 372
>gi|194468323|ref|ZP_03074309.1| DNA mismatch repair protein MutS [Lactobacillus reuteri 100-23]
gi|194453176|gb|EDX42074.1| DNA mismatch repair protein MutS [Lactobacillus reuteri 100-23]
Length = 881
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 163/279 (58%), Gaps = 29/279 (10%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
++ ++ ++ +DVL+SFAV S H + P+ N G VLKIK H
Sbjct: 530 TRLQKLAQQLAELDVLQSFAVV----SEDYH--FVRPEM--------NTGHVLKIKDGRH 575
Query: 799 PFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
P G VPND+L+GED+D LL+TGPNM GKST +R L ++AQ+GCF
Sbjct: 576 PVVEKFMGHQEYVPNDVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQIGCF 630
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L + D +FTR+GA D +++GESTF+VE E + L AT SL++ DE+GRGT
Sbjct: 631 VPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEIGRGT 690
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
+T+DG A+A A+ + + + + LF+THYH LT L+ K+ +
Sbjct: 691 ATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELT---------ALESSLARLKNVHVGAT 741
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ D ELVFL+++++G +SYG+ VA +AG+P +++ A
Sbjct: 742 EKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSSLLKRA 780
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 165/378 (43%), Gaps = 54/378 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ +++ ++ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G D +L AI N ++ A+ D + + ++N+ L+
Sbjct: 118 NGEQARDNNYLAAISAQNG-------LFSIAYTDLSTGELKTTSLNNANDAV---NELVN 167
Query: 443 VSPKEVI------------YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
+ KEV+ ++ R + + Q + K + S ++ D D ++
Sbjct: 168 LQSKEVVVDGELPVEITTQFKQRNILQSHQPTVLKNAEISYLIQ--------DLDDQAQQ 219
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDVLRNGDILPYK 549
+ L Y + ++L + +Q I + + I H S+ L +++ N
Sbjct: 220 HVVALLVSYL---LTTQKRSLAH-LQKAIAYQPSSFMKIDHYSKTNL-ELMHN------- 267
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R R LD T+ G RLL+ WI PL + I+ R D V+ L+ +
Sbjct: 268 -MRSGKRQGTLAWLLDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSN 326
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL GRV
Sbjct: 327 LQQELIKVYDLERLAGRV 344
>gi|294102017|ref|YP_003553875.1| DNA mismatch repair protein MutS [Aminobacterium colombiense DSM
12261]
gi|293616997|gb|ADE57151.1| DNA mismatch repair protein MutS [Aminobacterium colombiense DSM
12261]
Length = 858
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 169/305 (55%), Gaps = 30/305 (9%)
Query: 717 HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
++ L+++ + L++ +E + + +SCIDVL AS++ A R I PQ
Sbjct: 509 QEIASLESKIYADLVQHTLEHVQKIQDGAAMLSCIDVL------ASLAQVAWERNYIRPQ 562
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNM 835
N G LKI+G HP LP VPNDI+L D + R L+TGPNM
Sbjct: 563 INN--------GLNLKIEGGRHPVIEATFLDLPFVPNDIVLDGDEE----RIALITGPNM 610
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GKST LR L VI+AQ+G F+P + L D +FTR+GA D + G STF+VE ET
Sbjct: 611 AGKSTYLRMAALLVIMAQMGAFIPAAEASMGLMDRVFTRIGARDELSRGNSTFMVEMIET 670
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC--RLLFATHYHPLTKE 953
A++L T S+V+LDE+GRGTST+DG +IA+AV L ++LFATHYH L
Sbjct: 671 ANILHNVTDRSIVVLDEIGRGTSTYDGMSIAWAVLEYLDHGCGSKPKVLFATHYHEL--- 727
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
V L+ K+ S +G++ + FLY++ G SYG++VA +AG+P V+
Sbjct: 728 ------VALEDHLNGLKNLSMAVHEGERGISFLYKVVDGPADRSYGIEVARLAGIPPAVL 781
Query: 1014 EAASH 1018
+ A H
Sbjct: 782 KRAFH 786
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 160/376 (42%), Gaps = 35/376 (9%)
Query: 260 LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG 319
+ +PP KM+ QY K +Y D LLFF++G FYE++ DA+ + LD +T
Sbjct: 1 MILPPNV--KMTPMLSQYVEWKKKYPDCLLFFRMGDFYEMFFEDAQKASEILDIALTSRD 58
Query: 320 VGK-CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTP 378
K G+ +D+ + KLV GYKV EQ+ + S++ R+++ +VTP
Sbjct: 59 PSKSIPMAGVPFHAVDNYLGKLVKAGYKVAICEQVSVPD------GKSLVDRRVIRIVTP 112
Query: 379 STTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
T V G + L +I N + ++ V+ L G + + + +
Sbjct: 113 GTYVPEEAGEEG-RLASINLLN----DDTIALAMLSVNTGCLE--AGVLKKEEAL----S 161
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDFLDASEVKKLVQLN 497
L+ +P EV+ + ++ L+ F E TP A V L
Sbjct: 162 LITGFNPGEVLIPDTIKREDLPVELQNFFILQRTKEQFTPDGAARWLCKIFNVPAL---- 217
Query: 498 GYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR----D 553
F + + H + + G I H++R+ LR L V +
Sbjct: 218 SVFGLEEGAFDTGCAGAVLHYLEETQFGA-IQHVTRIY---PLREKHFLHLDVASQQNLE 273
Query: 554 CLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ DG TLY L+ C G+RLLR WI PL D + IN R + VE+L+++ V +
Sbjct: 274 LVSGDGPTLYSVLNKCKNPMGRRLLREWILRPLLDQDAINKRQNGVEFLVQDPVVRQKLQ 333
Query: 612 QYLRKLPDLERLLGRV 627
L + D+ER R+
Sbjct: 334 NLLGECRDIERASSRL 349
>gi|284813531|ref|NP_002430.3| DNA mismatch repair protein Msh3 [Homo sapiens]
gi|317373576|sp|P20585.4|MSH3_HUMAN RecName: Full=DNA mismatch repair protein Msh3; Short=hMSH3; AltName:
Full=Divergent upstream protein; Short=DUP; AltName:
Full=Mismatch repair protein 1; Short=MRP1
Length = 1137
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 177/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 800 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 854
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 855 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 902
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G+STF+ E T+TA +
Sbjct: 903 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEI 962
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 963 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1022
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1023 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1082
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1083 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1114
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 207/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 170 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 224
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 225 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 270
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 271 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 328
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 329 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 388
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 389 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 447
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 448 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 507
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 508 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 562
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+E
Sbjct: 563 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIE 622
Query: 622 RLL 624
R L
Sbjct: 623 RGL 625
>gi|320587388|gb|EFW99868.1| DNA mismatch repair protein msh3 [Grosmannia clavigera kw1407]
Length = 1180
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 171/320 (53%), Gaps = 43/320 (13%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA- 801
+ + A++ +D L S A A++ RP++L + + P L I+G HP A
Sbjct: 820 DAVTALATLDCLVSLARVAALPGYV--RPVVLGEDDRD--NEKETAPRLVIRGGRHPVAE 875
Query: 802 -LGENGGLPVPNDILLGEDSDD------CLPRTLLLTGPNMGGKSTLLRATCLAVILAQL 854
L G +P + + G+D D+ P +L+TGPNMGGKS+ +RA L +LAQ+
Sbjct: 876 HLLPGGYIPFSTE-MGGKDEDEDENATASKPPAILITGPNMGGKSSFVRAVALLTLLAQI 934
Query: 855 GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELG 914
G FVP + L+LAD I TR+GA D + GESTF+VE +ETA++L+ AT SLV+LDELG
Sbjct: 935 GSFVPADAMALTLADAIHTRMGARDNLFAGESTFMVEVSETAAILRAATARSLVVLDELG 994
Query: 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK------EFASHPHVTLQHMACA 968
RGTST DG AIA+AV + + CR LF THY L + + A P V HM A
Sbjct: 995 RGTSTHDGAAIAHAVLEHIARDVRCRTLFITHYQSLARVADGLVDHAGLPLVQNVHMRFA 1054
Query: 969 FKS-------------------NSENYSKGD-----QELVFLYRLTSGACPESYGLQVAV 1004
++ NSEN D E+ FLY + G SYGL VA
Sbjct: 1055 ARNRGLVGDAGKAEMKNTENTENSENPESPDTDTDNTEITFLYEVAPGMAHRSYGLNVAR 1114
Query: 1005 MAGVPQKVVEAASHAALAMK 1024
+A +PQ+V+ A+ + M+
Sbjct: 1115 LARLPQRVIAVANRMSREME 1134
Score = 57.0 bits (136), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 142/377 (37%), Gaps = 55/377 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLSGVGKCR 324
Q+ +K Q+ D LL +VG + + DA ++L D + + + +
Sbjct: 216 QFLEIKRQHPDTLLVVEVGYKFRFFGEDARTAGRQLGIVCVPGKMRYDEDASEAHLERFA 275
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVTPSTTVD 383
I + V +LVA G+KVG + Q+ET+ KA + N+ R+L +V T T VD
Sbjct: 276 SASIPVPRLAVHVRRLVAAGHKVGVVRQMETAALKKAGDNRNAPFVRRLTSVYTKGTYVD 335
Query: 384 GTIGP----------DAVHLLAIKE-----GNCGPDNGSVVYGFAFVDCAALRVWVGTIN 428
+ + ++L + E G G D V G V +
Sbjct: 336 EEMEATTSETSEAKQNGGYILCLTETSVRGGGSGADE-RVEIGVLAVQPTTGDILYDQFE 394
Query: 429 DDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488
D + L L+ ++P E++ L + +K ++ S GSAA V +
Sbjct: 395 DGFLRSELETRLLHIAPCELVIVG-TLSRTTEKLVQHLS-GSAANVFGDRTRVERVAGSP 452
Query: 489 EVKK----LVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV----- 539
K +VQ G G + + L +I HL LD V
Sbjct: 453 TAAKAHSEVVQFYGRVGGGDGDLDLDRVLALPEAVTI-CLAAMIQHLVEYGLDHVFSLTK 511
Query: 540 -----------LRNGDIL-PYKVYRDCLR--MDGQTLY-LDSCVTSSGKRLLRSWICHPL 584
L G L +VYR+ + G L+ +D T G RLLR WI PL
Sbjct: 512 NFASFATRQHVLLGGTTLESLEVYRNATDHGLRGSLLWAVDKTQTRFGHRLLRKWIGRPL 571
Query: 585 KDVEGINNRLDVVEYLM 601
D + R D VE L+
Sbjct: 572 LDGRVLAARADAVEELL 588
>gi|145480193|ref|XP_001426119.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393192|emb|CAK58721.1| unnamed protein product [Paramecium tetraurelia]
Length = 1103
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 185/358 (51%), Gaps = 33/358 (9%)
Query: 695 GLDKFLTQFEAAIDSDFPDYQNHDVTD-LDAETLSILIELFIEKASQWSEVIHAISCI-- 751
G +F T F I+ Y+ V D L + L + E F + S E IS +
Sbjct: 775 GFQRFQTTF---IEEQL--YKLRKVEDELSQKLLPFINEYFTKFYSHRKEFFQLISYLSE 829
Query: 752 -DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV 810
D L S A+ ++ + P + QD ++ +HP L V
Sbjct: 830 ADCLISLALVSNEQKVSCF----------PQIIQDESAKRCELIEAYHPCLLQNKDVEWV 879
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PN I D TLLLTGPNM GKSTLLR +++ILAQ+GC VP + L+ D
Sbjct: 880 PNTIKFTGSID-----TLLLTGPNMSGKSTLLRLIGVSIILAQIGCAVPAQSFTLTPFDR 934
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
IF RLGATDR++ G+STF +E ET ++L T SLVI+DELGRGTST+DG A+A AV
Sbjct: 935 IFCRLGATDRLLEGKSTFFIELEETKTILDNCTSRSLVIIDELGRGTSTYDGVALASAVL 994
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
R L ++ LFATHYH L EFA +++ C K +Y + DQ +VF Y+L
Sbjct: 995 RFLSDKTKPMTLFATHYHILLDEFALFKNIS----QCVMK----HYQEKDQ-VVFKYKLI 1045
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWL 1048
G +S+ VA +AGVP++V++ A + K + K+ E +F+ + ++ L
Sbjct: 1046 EGVAEKSFATNVAQIAGVPKEVIKKAKQMEAKITKEESKINKNREILKKFNQIIKQLL 1103
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 236 WLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGK 295
++ P IRD+ RRPD+P Y+ T+ IP + +K+ +QYWN K ++D ++FF+ G+
Sbjct: 128 FMQPEHIRDSEGRRPDEPDYNPSTIDIPNDQYQKLPPMFRQYWNAKKNHLDSMIFFRCGR 187
Query: 296 FYELYELDAEIGHKELDWKITLSGVGK-CRQVGISESGIDDAVEKLVARGYKVGRIEQLE 354
+ + DA I K + + G + C V + ++ + L+ +G+K+ IEQLE
Sbjct: 188 WIAVMYNDAIIVAKMFNRYLGFWGKDRPC--VTVYDNQLPIYQRALLEKGHKIIMIEQLE 245
Query: 355 TSEQAKARHTNSVISRKLVNVVTPSTTVD----GTIGPDAVHLLAIKEGNCGPDNGSVVY 410
++ A + V+ R++ +++ T D T + +L + + +Y
Sbjct: 246 KADVAN-KEDGEVVRREITQMISRGTLQDLGDAETYEQRNLLVLVCSKAPVNLKGHTYIY 304
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
G + VDC DDA L +++ P EVI LCK
Sbjct: 305 GVSIVDCTTNLFTFDQFFDDAQSNHLRSIIYNTKPVEVI-----LCK 346
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK---LPD 619
YL+ C T+ KRLL W+ PL++ + I R + V+ L + ++ A++ R+ LPD
Sbjct: 548 YLNRCATAPAKRLLTKWVQSPLQNYKLIIERQECVQEL---TNLIPKCAEFQRRIKSLPD 604
Query: 620 LERLLGRVKARVQASSCIVLPLI-GKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKE 674
+ER + + + + +P+ G+ + K ++K +++ +R A + + ++
Sbjct: 605 IERAIIKCFNTIHSHKLKAVPITGGESIGKTKLKEIKNVLSHIRQAAEAFKIFDQD 660
>gi|345886093|ref|ZP_08837367.1| hypothetical protein HMPREF0178_00141, partial [Bilophila sp. 4_1_30]
gi|345040838|gb|EGW45062.1| hypothetical protein HMPREF0178_00141 [Bilophila sp. 4_1_30]
Length = 504
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 148/245 (60%), Gaps = 23/245 (9%)
Query: 781 AVRQDNGGPVLK------IKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGP 833
AVR + PVL I+ HP G G VPND+ + ED R LL+TGP
Sbjct: 191 AVRHNWSRPVLHTGQSITIREGRHPIVEGIIGEAAFVPNDLHMDEDR-----RLLLITGP 245
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NM GKST+LR T L +LAQ+G FVP L L D IF+R+GA+D + G+STF+VE
Sbjct: 246 NMAGKSTVLRQTALICLLAQMGSFVPAREAQLGLCDRIFSRVGASDNLAQGQSTFMVEMM 305
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI--NCRLLFATHYHPLT 951
ETA +L++AT+ SLVILDE+GRGTSTFDG A+A+AV +L R + R LFATHYH LT
Sbjct: 306 ETARILRQATKRSLVILDEIGRGTSTFDGLALAWAVAEELARRAGGSIRTLFATHYHELT 365
Query: 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
P V ++A + + E+VFL RL G SYG++VA +AGVPQ
Sbjct: 366 ALEGKIPGVHTMNIAI---------REWNGEIVFLRRLIPGPSDRSYGIEVARLAGVPQP 416
Query: 1012 VVEAA 1016
VV+ A
Sbjct: 417 VVQRA 421
>gi|403413091|emb|CCL99791.1| predicted protein [Fibroporia radiculosa]
Length = 973
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 186/329 (56%), Gaps = 27/329 (8%)
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAM 768
DYQ + T++ A+T S L++ + AS ++ V+ + ++ +DV+ SF+ A + +
Sbjct: 590 DYQ--ETTEMYAKTQSGLVKEVVNIASTYTPVLESWNTVLAHLDVIVSFSHVAVNAPESY 647
Query: 769 HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTL 828
+P +L Q + +D P L++ ++ +PNDI + +D +
Sbjct: 648 VKPQVLEQGSGSLILKDARHPCLEV----------QDDMSFIPNDIQMIKDESEFQ---- 693
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
++TGPNMGGKST +R T + ++AQ G FVPC L + D+I R+GA D + G STF
Sbjct: 694 IITGPNMGGKSTYIRQTGVIALMAQTGSFVPCSEASLPVFDSILCRVGAGDSQLKGISTF 753
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+ E ETA++L+ A++DSL+I+DELGRGTST+DG+ +A+A+ + +I LFATH+H
Sbjct: 754 MAEMLETATILRSASKDSLIIIDELGRGTSTYDGFGLAWAISEHIASKIRAFCLFATHFH 813
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT HV H+ + EN D+++ LY++ G C +S+G+ VA +A
Sbjct: 814 ELTALDQEITHVKNLHVVAHVSKSDENTR--DRDITLLYKVEPGVCDQSFGIHVAELANF 871
Query: 1009 PQKVVEAASHAALAMKKSIGESFKSSEQR 1037
P+ VV+ A A + E F ++E+R
Sbjct: 872 PENVVKLAKRKADEL-----EDFNTAEER 895
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T+ G RLL SW+ PL ++ I+ R ++VE L++++ ++ YL+ +PD+ R
Sbjct: 354 LNKCKTAQGSRLLGSWLKQPLVNLHEIHKRQNLVEILVEDANARRILQDDYLKMMPDMHR 413
Query: 623 LLGRVKARVQASSCIV 638
+ R + V + +V
Sbjct: 414 ICKRFQKSVASLEDVV 429
>gi|390334498|ref|XP_001193092.2| PREDICTED: DNA mismatch repair protein Msh3-like [Strongylocentrotus
purpuratus]
Length = 1242
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 161/301 (53%), Gaps = 22/301 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
+E F E + + ++ D L S A T S G RP I + GP
Sbjct: 926 FLESFGENYFSYRRAVQHLASFDCLLSLA-TVSKQDGYC-RPTI------------HDGP 971
Query: 790 V-LKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
+ IKG HP L +G VPND + D +C+ ++TGPNMGGKS+ ++
Sbjct: 972 CKIDIKGGRHPVVSTLKADGDQYVPNDTSINVDGLNCM----IITGPNMGGKSSYIKQVA 1027
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L I+AQLGC+VP E + D IFTR+GA+D I STF+ E E + ++ KAT S
Sbjct: 1028 LITIMAQLGCYVPAESASIGAVDAIFTRMGASDDIFRNRSTFMSELLEASDIMAKATCRS 1087
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
LVI+DELGRGTST DG AIA+A R L+E + C LF THY PL E + H + +
Sbjct: 1088 LVIMDELGRGTSTHDGVAIAFATARHLIEEVKCLTLFVTHYPPLA-ELSDHYPTQVGNFH 1146
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+F + ++L FLY+L G SYGL VA +A +P ++E AS + ++KS
Sbjct: 1147 MSFLLHDAEDEDPVEKLTFLYQLVDGVAGRSYGLNVARLADIPDAILEKASSKSHDLEKS 1206
Query: 1027 I 1027
+
Sbjct: 1207 V 1207
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/453 (22%), Positives = 177/453 (39%), Gaps = 91/453 (20%)
Query: 257 KRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT 316
K++ Y P E +Q+ +K Y D +L + G Y + DAEI ++L+
Sbjct: 394 KKSQYTPLE---------QQFMKIKESYTDTVLLVECGYRYRFFGEDAEIASRDLNIFCH 444
Query: 317 LSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNV 375
L I + V +LVA+G+KVG ++Q+ET+ +A + RKL +
Sbjct: 445 LDH--NFMTASIPTHRLFVHVRRLVAKGHKVGVVKQMETAALKAAGDNKGQPFERKLTAL 502
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAA 435
T ST + P G V+Y + +D+ +
Sbjct: 503 YTKSTLI------------------VQPATGDVIYD--------------SFHDNGHLSE 530
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA-----LELTPAMAVTDFLDASEV 490
L L + P E++ L + +K L+ F S +E PA D +
Sbjct: 531 LDTRLHHIQPVELLLPE-TLSDKTEKLLKDFRMSSQTEDRIRIERLPA-------DVFQY 582
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFS-----ALGGLISHLSRLMLDDVLR-NGD 544
V+ F G+ + A V+Q + L L+ +L L +L+ +
Sbjct: 583 TSAVEEVSSFYGNQTETQSAKTGVLQSVLSLPKPVICCLAALLKYLKEFNLHRILQATSN 642
Query: 545 ILPYKVYRDCLRMD-------------------GQTLY-LDSCVTSSGKRLLRSWICHPL 584
+ + +D LR+D G L+ L+ T GKR L W+ PL
Sbjct: 643 MRAFNSSQDTLRLDACAFRNLEIFQNQVDGSEKGTLLWVLNHTKTRYGKRQLMKWLSQPL 702
Query: 585 KDVEGINNRLD-VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR-------VQASSC 636
DV+ I++RL+ V E L +S + + Q + P++ER L + + V +
Sbjct: 703 TDVQDIDSRLEAVTELLDSDSSSLDKLCQVFSRSPNVERGLCSIYHKKCSPAEFVTVTRA 762
Query: 637 IVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLM 669
+ + K L++ V + L+K + I M L+
Sbjct: 763 LSRLSLTVKTLRESVDIKSVLLKDILIQMPSLL 795
>gi|158260735|dbj|BAF82545.1| unnamed protein product [Homo sapiens]
Length = 1128
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 791 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 845
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 846 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 893
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 894 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 953
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 954 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1013
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1014 HQVGNYHMGFLVSEDESKLDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1073
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1074 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1105
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 207/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 161 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 215
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 216 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 261
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 262 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 319
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 320 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 379
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 380 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 438
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 439 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 498
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 499 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 553
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+E
Sbjct: 554 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIE 613
Query: 622 RLL 624
R L
Sbjct: 614 RGL 616
>gi|406967699|gb|EKD92716.1| hypothetical protein ACD_28C00354G0004, partial [uncultured
bacterium]
Length = 776
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 175/588 (29%), Positives = 267/588 (45%), Gaps = 113/588 (19%)
Query: 526 GLISHLSR---------LMLDD-VLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRL 575
GLI HL R ++LD+ LRN ++L + D + LD T+ G RL
Sbjct: 155 GLI-HLKRPKPYLPGEFMLLDEATLRNLELL--STFHDHKKEGSLLGVLDRTQTAMGGRL 211
Query: 576 LRSWICHPLKDVEGINNRLDVVEYLMKNSEV----------------------------- 606
L+ W PL + I RLD VE +K +
Sbjct: 212 LKQWTVRPLTEKNRIQVRLDAVENFIKEGSIFETLWEEMGHILDLERSVARLSLERGTPR 271
Query: 607 -VMVVAQYLRKLPDLERLLGRVKARVQAS---SCIVLP----LIGKKVLKQ---QVKVFG 655
M + L++LP ++ LL + A + A LP LI ++++ +K G
Sbjct: 272 DAMALKSSLQRLPLVKSLLSALNAPLLAELQKKLQPLPDLVSLIDASIVEEPPLNLKEGG 331
Query: 656 SLVKGLRIAMDLLMLMHKEGH-IIPSL-----------------SRIFKPPIFDGSDGL- 696
+ +G +D L + +EG I +L +R+F I L
Sbjct: 332 FIREGFHEELDELRSLSREGKGFIKNLQQQEIQRTGISSLKVKYNRVFGYYIEISKSNLG 391
Query: 697 --------DKFLTQFEAAIDSDFPDYQNHDVTD------LDAETLSILIELFIEKASQWS 742
+ L E I + Y+ +T L+AE L E +E
Sbjct: 392 NVPENYTRKQTLVNAERYITPELKTYEEKVLTAEDKSKALEAELFRELRETIMESIGLIQ 451
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ AI+ +DVL SF +S A+ + PQ +R D L I+G HP
Sbjct: 452 QNAEAIAELDVLLSF------TSVALKNRYVKPQ-----LRDDF---TLTIQGGRHPVVE 497
Query: 803 GEN-GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
N G +PND ++ L L+TGPNM GKST LR L ++AQ+G +VP +
Sbjct: 498 TMNPSGDFIPNDTHFNAENQQIL----LITGPNMSGKSTFLRQVALISLMAQIGSYVPAQ 553
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+++ D IFTR+GA+D + G+STF+VE E A++L AT SL+ILDE+GRGTST+D
Sbjct: 554 SAEIAVVDRIFTRVGASDNLSKGQSTFMVEMQEAANILNNATARSLIILDEIGRGTSTYD 613
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G +IA+A+ L ++I + LFATHYH L A + C E+ G
Sbjct: 614 GLSIAWAILEYLHQQIGAKTLFATHYHEL---IAVTERLERAQNYCVLV--HEDTQNG-- 666
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+VFL+++ +G +SYG++VA +AG+P+ V+E A H +++ + E
Sbjct: 667 -VVFLHKIQAGGIDKSYGIEVAKLAGLPRAVIEKAQHILKDLEEGVVE 713
>gi|181842|gb|AAB47281.1| MSH3 [Homo sapiens]
gi|49615092|dbj|BAD27111.1| hMSH3 protein [Homo sapiens]
Length = 1137
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 800 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 854
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 855 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 902
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 903 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 962
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 963 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1022
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1023 HQVGNYHMGFLVSEDESKLDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1082
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1083 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1114
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 206/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 170 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 224
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 225 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 270
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 271 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 328
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 329 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 388
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 389 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 447
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 448 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 507
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 508 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 562
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+
Sbjct: 563 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIG 622
Query: 622 RLL 624
R L
Sbjct: 623 RGL 625
>gi|262373025|ref|ZP_06066304.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205]
gi|262313050|gb|EEY94135.1| DNA mismatch repair protein MutS [Acinetobacter junii SH205]
Length = 885
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 180/337 (53%), Gaps = 38/337 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ + +Q + AI+ IDVL +FA A +++ A RP P++
Sbjct: 544 LLDELRQNIAQLQMMSAAIAHIDVLANFAYQARLNNWA--RPEYTPET------------ 589
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+ HP N PND L D R ++TGPNMGGKST +R T L
Sbjct: 590 CIKIQAGRHPVVESLNKAPFTPNDTFL-----DHQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA GCFVP + L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGCFVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +RI C LFATHY LT E S
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVLDLTKRIKCLCLFATHYFELT-ELGS------------- 750
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ +NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 751 EAGIDNYHVTAQELNGNLILLHKVQHGPASQSHGLQVAKLAGIPANVIKDAQKRLKILEK 810
Query: 1026 SIGESFKSSEQRSEFSSL-HEEWLKTIVNVSRVDCNS 1061
+ ++S Q FS++ HE K I V V S
Sbjct: 811 QQHQHLQNSVQNDLFSTVEHEIETKVIEKVIEVKMQS 847
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 70/385 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK +Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKMEYPHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKTNGEPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V V+TP T D + +
Sbjct: 76 YHSAEGYLARLVKSGRT--VAICEQVGEVTGKGPVERKVVRVLTPGTLTDDALLSSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKEVI 449
+L+A+ C N GFA +D +A +V T + L L+ P E++
Sbjct: 134 NLVAL----CIQQNQ---IGFALLDLSAGIFKVQQQTYKPEQLPIELARLM----PSEIL 182
Query: 450 YE----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF---------LDA 487
+ ++ + + +K L F+ +A L AV+ L
Sbjct: 183 IDEDLVDQNIIEHIKKNLDCPITKRPNVDFNQNNAQKTLCDQFAVSTLSGFGLDPIPLAK 242
Query: 488 SEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILP 547
+ L+ ++ P ++++ ++ F AL + RN +I+
Sbjct: 243 AAAAALIHYAKETQKTALPHIRSIQ--IEQSTDFIALDPITR-----------RNLEII- 288
Query: 548 YKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK--- 602
+ L G +L+ ++ C T+ G RLL + P++D ++ RLD +E L+K
Sbjct: 289 -----EPLFEHGTSLFQLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDAIEQLLKGYH 343
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
S V +V L+++ D+ER+L RV
Sbjct: 344 ESPVRLV----LKEIGDIERVLSRV 364
>gi|120660370|gb|AAI30435.1| MutS homolog 3 (E. coli) [Homo sapiens]
Length = 1137
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 800 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 854
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 855 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 902
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 903 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 962
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 963 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1022
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1023 HQVGNYHMGFLVSEDESKLDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1082
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1083 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1114
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 207/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 170 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 224
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 225 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 270
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 271 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 328
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 329 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 388
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 389 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 447
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 448 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 507
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 508 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 562
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+E
Sbjct: 563 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIE 622
Query: 622 RLL 624
R L
Sbjct: 623 RGL 625
>gi|338706293|ref|YP_004673061.1| DNA mismatch repair protein MutS [Treponema paraluiscuniculi Cuniculi
A]
gi|335344354|gb|AEH40270.1| DNA mismatch repair protein MutS [Treponema paraluiscuniculi Cuniculi
A]
Length = 900
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/270 (42%), Positives = 159/270 (58%), Gaps = 26/270 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA-LGENG 806
++ +DVL+SFA A++ G P +D L+I G HP L
Sbjct: 555 VAQLDVLQSFA-HAALQHGW----------SQPVFIKDGA---LRITGGRHPVVELHLPS 600
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
G VPND+ L LPR L+TGPNM GKST LR T L ++AQ+G FVP E L+
Sbjct: 601 GEFVPNDLTLSSSEHAVLPRFALITGPNMAGKSTFLRQTALICLIAQVGSFVPAEKAELT 660
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IF R+GA D + GESTFLVE +ETA +L+ AT+DSLVI+DE+GRGT+T DG +IA
Sbjct: 661 PVDRIFCRVGAADNLARGESTFLVEMSETAHILRAATRDSLVIMDEVGRGTATEDGLSIA 720
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
AV L+ + + LFATHYH L++ +HP L+H+ + + D +VFL
Sbjct: 721 QAVSEYLLHHVRAKTLFATHYHELSR--LAHPR--LEHLKL-------DVLETDNTIVFL 769
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++T G+C SYG+ VA +AG+P+ V+ A
Sbjct: 770 KKVTPGSCGSSYGIYVARLAGLPESVLARA 799
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 155/380 (40%), Gaps = 58/380 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +++Q+ D +LFF++G FYE+++ DA H +TL+ G+
Sbjct: 12 RQYHAIRAQHPDAVLFFRLGDFYEMFDSDAL--HVSTLLGLTLTKRNGTPMCGVPVHTAR 69
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G KV EQ+ + + RK++ +++P T V D +
Sbjct: 70 THIARLLKHGKKVALCEQVSHPVPGE------LTQRKVIEIISPGTAVEDDFLSQGFSQY 123
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
LA C D F++++ + ++ + + AL +V P EV+
Sbjct: 124 LATV---CASD---ATVAFSYLEVSTGAFFITSFPRAEAADALQKEFGRVQPSEVLL--- 174
Query: 454 GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA----SEVKKLVQLNGYFNGSSSPWSK 509
+ LR +A L L P + T DA K +L+ F ++
Sbjct: 175 -----SASVLRSLPELAAILSLYPRLVRTTGADALFNPEHTKN--RLHHCFR------TR 221
Query: 510 ALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD--------- 558
L+ ++ H +A G LI++L + I Y ++ D + +D
Sbjct: 222 NLDCLTLLPHSPDLAAAGALIAYLEETTRHPLSHVSAITRYHIH-DFVEIDDATRKNLEI 280
Query: 559 ---------GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+L+ L+ T+ G RLLR W+ HPL+ E I RL V + ++
Sbjct: 281 LQNLHDSTHAHSLFETLNYTHTAMGTRLLRYWLHHPLRSQEEIQKRLSAVVFFHHRPHIL 340
Query: 608 MVVAQYLRKLPDLERLLGRV 627
+ L + D+ERL+ RV
Sbjct: 341 KALRATLSCVRDVERLVARV 360
>gi|30089006|gb|AAP13535.1| mutS homolog 3 (E. coli) [Homo sapiens]
Length = 1140
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 803 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 857
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 858 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 905
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 906 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 965
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 966 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1025
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1026 HQVGNYHMGFLVSEDESKLDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1085
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1086 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1117
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 207/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 173 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 227
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 228 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 273
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 274 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 331
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 332 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 391
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 392 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 450
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 451 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 510
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 511 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 565
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+E
Sbjct: 566 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIE 625
Query: 622 RLL 624
R L
Sbjct: 626 RGL 628
>gi|390459821|ref|XP_002744847.2| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Msh3
[Callithrix jacchus]
Length = 1126
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 177/331 (53%), Gaps = 22/331 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ ID + S A A G RP + Q +
Sbjct: 790 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATIDCIFSLAKVAK--QGEYCRPTV--QEE 844
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L EDS+ R +++TGPNMGGK
Sbjct: 845 RKILIKNGRHPVIDV-------LLGEQDQY-VPNSTDLSEDSE----RVMIITGPNMGGK 892
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 893 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 952
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 953 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1012
Query: 959 H-VTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H V HM + G+++ + FLY++T G SYGL VA +A VP +++
Sbjct: 1013 HQVGNYHMGFLVSEDESRLPPGEEQVPDFVTFLYQITRGIAERSYGLNVAKLADVPGEIL 1072
Query: 1014 EAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
+ A+H + ++ I K + ++ ++H
Sbjct: 1073 KKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1103
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 183/433 (42%), Gaps = 69/433 (15%)
Query: 244 DANRRRPDDPLYDKRT--LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
D N ++ D +KR+ +Y P E QY +K Q+ D +L + G Y +
Sbjct: 198 DENLQKTDSKPANKRSKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFG 248
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAK 360
DAEI +EL+ L I + V +LVA+GYKVG ++Q ET+ +A
Sbjct: 249 EDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAV 306
Query: 361 ARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------HLLAIKEGNCG- 402
+ +S+ SRKL + T ST + + P DAV +LL I E N
Sbjct: 307 GDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDAIMTDTSTSYLLCISENNENV 366
Query: 403 --PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
G+V G V A V + D AS + L + + P E++ L K+ +
Sbjct: 367 RDKKKGNVFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLP-LALSKQTE 425
Query: 461 KALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN--- 501
+ + ++ S E + A AVT+F D + K ++G N
Sbjct: 426 MLIHRATSVSVRDDRIRVERMDDTYFEYSHAFQAVTEFYAKDTVDFKGSKIISGIINLEK 485
Query: 502 ------GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
+ + K LE ++ F L + ++ + LRN +IL +
Sbjct: 486 PVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT--- 540
Query: 554 CLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVA 611
++ G L+ LD TS G+R L+ W+ PL + IN RLD V E L S V +
Sbjct: 541 DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIE 600
Query: 612 QYLRKLPDLERLL 624
+L KLPD+ER L
Sbjct: 601 NHLHKLPDVERGL 613
>gi|1490521|gb|AAB06045.1| hMSH3 [Homo sapiens]
gi|119616268|gb|EAW95862.1| mutS homolog 3 (E. coli), isoform CRA_b [Homo sapiens]
Length = 1128
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 791 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 845
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 846 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 893
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 894 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 953
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 954 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1013
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1014 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1073
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1074 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1105
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 207/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 161 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 215
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 216 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 261
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 262 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 319
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 320 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 379
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 380 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 438
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 439 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 498
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 499 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 553
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+E
Sbjct: 554 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIE 613
Query: 622 RLL 624
R L
Sbjct: 614 RGL 616
>gi|120660058|gb|AAI30437.1| MutS homolog 3 (E. coli) [Homo sapiens]
Length = 1137
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 800 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 854
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 855 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 902
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 903 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 962
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 963 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1022
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1023 HQVGNYHMGFLVSEDESKLDPGTAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1082
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1083 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1114
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 207/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 170 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 224
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 225 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 270
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 271 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 328
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 329 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 388
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 389 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 447
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 448 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 507
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 508 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 562
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+E
Sbjct: 563 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIE 622
Query: 622 RLL 624
R L
Sbjct: 623 RGL 625
>gi|374724184|gb|EHR76264.1| DNA mismatch repair protein MutS [uncultured marine group II
euryarchaeote]
Length = 877
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 168/298 (56%), Gaps = 31/298 (10%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
A +++ ++ IDVL+ F A S A RP + + +K +G
Sbjct: 535 AQTLAQIAGKVAAIDVLQCFGTIAR--SRAWTRPEMAVSDQ------------MKAQGAR 580
Query: 798 HPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
HP L + G VPND+ L + + LL+TGPNMGGKST LR T L ILAQ G F
Sbjct: 581 HPV-LEQQSGF-VPNDLDLTKKR-----KFLLITGPNMGGKSTYLRTTALMSILAQSGSF 633
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP E + L D IFTR+GA+D + G STF++E E A +L++AT +SLV+LDE+GRGT
Sbjct: 634 VPAEKAKIGLVDRIFTRVGASDDLRRGRSTFMMEMIEVAHILRRATSNSLVLLDEIGRGT 693
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
STFDG +IA++V + +RI R LFATHYH L + L+ + +
Sbjct: 694 STFDGLSIAWSVTEDICKRIQARTLFATHYHQL---------IGLEGEVDGLVNVHVQVA 744
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 1035
+ + EL F++ + G C +SYG+QVA +AG+P+ VVE A+ LA + E K+ E
Sbjct: 745 EANGELRFMHTVADGPCDDSYGVQVAALAGLPRPVVERATD-LLAFLERQAEGAKAGE 801
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT---LSGVGKCRQVGISESG 332
Q+ ++K+++ D +LFF++G FYEL+ DA G + L +T + G
Sbjct: 3 QFTDIKTEHPDSVLFFRMGDFYELFHEDAVTGSEVLGLALTSRDKKADKPIKMAGFPWHA 62
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDAV 391
++D + ++ G+KV EQ + + R ++ R + V TP + + + +G +
Sbjct: 63 LEDNIRTMLKAGHKVTVAEQ-----EQELREGAKLLERVVTRVYTPGSLYEESLLGTEER 117
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN-DDASCAALGALLMQVSPKEVI 449
LL C G G +D + + W ++ DD AL +L + P E++
Sbjct: 118 SLLL---SIC---LGKSSIGIGIIDASTGQAWASNLDGDDRFSRALDEVL-RWRPTEIV 169
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+++C ++ G+RLL++WI PL D+ I R D V L +++ + + + LR L D+ERL
Sbjct: 288 MNACRSAMGRRLLKTWILRPLADLNAIAARHDAVATLSRSARRLDGLREALRGLRDMERL 347
>gi|327312778|ref|YP_004328215.1| DNA mismatch repair protein MutS [Prevotella denticola F0289]
gi|326945312|gb|AEA21197.1| DNA mismatch repair protein MutS [Prevotella denticola F0289]
Length = 887
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 180/332 (54%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D + L++ +LF+E E I + I+ +D
Sbjct: 510 LAQAERYITPELKEYE-EKILGADEKILAMEGQLFMELIQDMQEFIPQIQINANLIAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF + RP++ +G VL IK HP +GE
Sbjct: 569 CLLSFMKVSQQQRYV--RPVV------------DGSEVLDIKQGRHPVIETQLPIGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL + + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + +
Sbjct: 613 -YVPNDVLLDTEHQ----QIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARIGM 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R+ R LFATHYH L + S P + ++ + + + D +++F
Sbjct: 728 AIVEYLHEHPRVQARTLFATHYHELNEMEKSFPRI---------RNFNVSVKEVDGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 779 LRKLEPGGSEHSFGIHVAEIAGMPRSIVKRAN 810
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 166/385 (43%), Gaps = 45/385 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL-SGVGKCRQV 326
K ++ KQ++++K+Q+ L+ F+ G FYE Y DA K L +T + G C +
Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESAKILGITLTRRNNGGNCDSI 65
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA--------RHTNSVISRKLVNV 375
G +D + KL+ G +V +QLE ++ + + ++ R + +
Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
VTP + + L KE N G G +F+D + G + +
Sbjct: 126 VTPGVALSDNV-------LNYKENNFLAAVHFGKGACGVSFLDISTGEFLTG----EGTF 174
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
+ LL PKEV+++ + Q R F E+ + F D + +KL
Sbjct: 175 DYVEKLLGNFQPKEVLFDR----AKKQDFERYFGTRLCTFEMDDWV----FTDQTARQKL 226
Query: 494 VQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGDIL 546
++ L G+ A ++Q+ +I I+ L+R+ D +R D
Sbjct: 227 LKHFGTKNLKGFGVDHLHNGVVAAGAILQYLEITQHTHINHITSLARIEEDKYVRM-DRF 285
Query: 547 PYKVYRDCLRM--DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
+ M DG +L +D+ VT G R+LR W+ PLKD + IN RLDVV+YL +
Sbjct: 286 TIRSLELIAPMNEDGASLLDVIDNTVTPMGGRMLRRWMVFPLKDAKPINERLDVVDYLFR 345
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + ++ DLER++ +V
Sbjct: 346 EPDFRECIDEQFHRIGDLERIISKV 370
>gi|325859897|ref|ZP_08173027.1| DNA mismatch repair protein MutS [Prevotella denticola CRIS 18C-A]
gi|325482823|gb|EGC85826.1| DNA mismatch repair protein MutS [Prevotella denticola CRIS 18C-A]
Length = 887
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 180/332 (54%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D + L++ +LF+E E I + I+ +D
Sbjct: 510 LAQAERYITPELKEYEEK-ILGADEKILAMEGQLFMELIQDMQEFIPQIQINANLIAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF + RP++ +G VL IK HP +GE
Sbjct: 569 CLLSFMKVSQQQRYV--RPVV------------DGSEVLDIKQGRHPVIETQLPIGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL + + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + +
Sbjct: 613 -YVPNDVLLDTEHQ----QIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARIGM 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R+ R LFATHYH L + S P + ++ + + + D +++F
Sbjct: 728 AIVEYLHEHPRVQARTLFATHYHELNEMEKSFPRI---------RNFNVSVKEVDGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 779 LRKLEPGGSEHSFGIHVAEIAGMPRSIVKRAN 810
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 166/385 (43%), Gaps = 45/385 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL-SGVGKCRQV 326
K ++ KQ++++K+Q+ L+ F+ G FYE Y DA K L +T + G C +
Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESAKILGITLTRRNNGGNCDSI 65
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA--------RHTNSVISRKLVNV 375
G +D + KL+ G +V +QLE ++ + + ++ R + +
Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
VTP + + L KE N G G +F+D + G + +
Sbjct: 126 VTPGVALSDNV-------LNYKENNFLAAVHFGKGACGVSFLDISTGEFLTG----EGTF 174
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
+ LL PKEV+++ + Q R F E+ + F D + +KL
Sbjct: 175 DYVEKLLGNFQPKEVLFDR----AKKQDFERYFGTRLCTFEMDDWV----FTDQTARQKL 226
Query: 494 VQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGDIL 546
++ L G+ A ++Q+ +I I+ L+R+ D +R D
Sbjct: 227 LKHFGTKNLKGFGVDHLHNGVVAAGAILQYLEITQHTHINHITSLARIEEDKYVRM-DRF 285
Query: 547 PYKVYRDCLRM--DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
+ M DG +L +D+ VT G R+LR W+ PLKD + IN RLDVV+YL +
Sbjct: 286 TIRSLELIAPMNEDGASLLDVIDNTVTPMGGRMLRRWMVFPLKDAKPINERLDVVDYLFR 345
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + ++ DLER++ +V
Sbjct: 346 EPDFRECIDEQFHRIGDLERIISKV 370
>gi|384109603|ref|ZP_10010474.1| DNA mismatch repair protein MutS [Treponema sp. JC4]
gi|383868827|gb|EID84455.1| DNA mismatch repair protein MutS [Treponema sp. JC4]
Length = 880
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 162/289 (56%), Gaps = 26/289 (8%)
Query: 732 ELFIEKASQWSEVI-HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
+LFIE ++ I + + D + + VTAS + A+ I P+ +
Sbjct: 529 DLFIEVRRSLAQYIEYLLQIADEIANTDVTASFAQAAISHRWIRPEMDESCM-------- 580
Query: 791 LKIKGLWHPFALGEN---GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
+IK HP EN G VPND L+ D DD +P L+TGPNM GKST LR L
Sbjct: 581 FEIKSGRHPVV--ENHLPSGEFVPNDSLISSD-DDAVPSFDLITGPNMAGKSTYLRQNAL 637
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+LAQ G ++P E L + D IF R+GA+D + GESTFLVE TETA++L AT+ SL
Sbjct: 638 IALLAQTGSYIPAEKAHLGIVDRIFCRVGASDNLAKGESTFLVEMTETANILHAATKRSL 697
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VI+DE+GRGTST DG AIA AV L++ I C+ FATHYH L++ ++H
Sbjct: 698 VIMDEVGRGTSTEDGLAIARAVSEYLLDTIKCKTFFATHYHELSR---------MEHSNL 748
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
F + +G +VFL ++ G SYG+ VA +AG+P+ V++ A
Sbjct: 749 KFLCMDVSEQQGS--VVFLRKIKEGVTENSYGIHVAALAGIPKTVIDRA 795
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 157/395 (39%), Gaps = 89/395 (22%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +KS+Y + ++FF++G FYE+++ DA + L+ +TL+ GI
Sbjct: 15 QYREIKSKYQNEVVFFRLGDFYEMFDADAVEVSRLLN--LTLTHRASQPMCGIPYHAAKI 72
Query: 336 AVEKLVARGYKVGRIEQL-ETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAVH 392
+ +L+ G K+ EQ+ E + K + RK+V ++TP T V+ G A +
Sbjct: 73 YIARLLRLGKKIVICEQVGEIPKGGKG-----IAERKVVEIITPGTAVEAEYLDGFKASY 127
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI--- 449
L A+ GFAF+D + + L + P+E++
Sbjct: 128 LAALSISKARA-------GFAFIDVTTSSFRATSWPANKMAENFSKELNRAGPRELLLPL 180
Query: 450 -------------------------------YENRGLCKEAQKA-LRKFSAGSAALELTP 477
+ L + + A L+ F A E+ P
Sbjct: 181 SLKTNSDIQAVLNANTNIAVSYYPDWDFNYDLSYKKLTSQFKTANLKAFGLEEGACEIVP 240
Query: 478 AMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD 537
A + D+L+ + +S P ++ + D F LM+D
Sbjct: 241 AGFLLDYLEKT------------TNASIPHVNSIR--LYQDSEF------------LMMD 274
Query: 538 D-VLRNGDILPYKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINN 592
D RN +I + +R L CV T+ G RLLR+W+ PL ++ I +
Sbjct: 275 DSSRRNLEI------TENMRDGTSQFSLLECVDYTKTAMGSRLLRNWLLFPLTNLRQIED 328
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
R + V ++N +++ V L ++ D+ERL GR+
Sbjct: 329 RQNRVSNFVENRQLLEKVKADLSQILDVERLSGRI 363
>gi|298242708|ref|ZP_06966515.1| DNA mismatch repair protein MutS [Ktedonobacter racemifer DSM 44963]
gi|297555762|gb|EFH89626.1| DNA mismatch repair protein MutS [Ktedonobacter racemifer DSM 44963]
Length = 893
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 162/281 (57%), Gaps = 29/281 (10%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
+Q + ++ +DVL SFAV A +H+ PQ + Q +G + I+ H
Sbjct: 540 AQLAHTARLVARVDVLLSFAVVA------VHQGYTRPQ-----LEQGHG---IDIRDGRH 585
Query: 799 P---FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
P +AL +G + +PND + D R +LLTGPNM GKST LR L ++AQ+G
Sbjct: 586 PVVEYAL--DGDVFIPNDTQMEADEGR---RIMLLTGPNMAGKSTYLRQVALITLMAQIG 640
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP + + D IFTR+GA D I G+STF+VE ET ++L AT SL+ILDE+GR
Sbjct: 641 SFVPARQARIGVVDRIFTRVGAEDDIAAGKSTFMVEMEETGTILHHATPHSLLILDEIGR 700
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTST+DG AIA AV L R+ R LFATHYH L PH+ + MA S+ +
Sbjct: 701 GTSTYDGLAIARAVVEHLHSRLKARTLFATHYHELAALAEELPHLCVHAMAI---SDEDE 757
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ +VFL+++ G+ +SYG+ VA +AG+P +VE A
Sbjct: 758 HAS----IVFLHKVVEGSAGKSYGVHVARLAGMPMSIVERA 794
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 160/374 (42%), Gaps = 38/374 (10%)
Query: 271 SASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT--LSGVGKCRQVGI 328
+ ++KQY +KSQY D LL ++VG F+E ++ DA I +EL +T + G GI
Sbjct: 3 TPARKQYLRIKSQYPDTLLMYQVGDFFETFDEDARIAARELQIVLTSRMYGNEAVPLAGI 62
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP 388
+++ + KL+ GYKV EQ+ V+ R + ++T T + + P
Sbjct: 63 PLHALNNYIGKLITAGYKVSVCEQV-------GEVGRGVVDRAVTRILTAGTLSEPNLLP 115
Query: 389 --DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
+L+AI G V A VD + V + AL A L +++P
Sbjct: 116 ARQNNYLVAIA-------MGRVQTALAAVDVSTGEFLVTWFRSEELPVALDAELQRLNPV 168
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL--VQLNGYFNGSS 504
E + L + + + +F + + P + + KL VQ + +
Sbjct: 169 ECL-----LAEGSNREAYRFPTQTVTVTACPGHFFNSEMAQDRLCKLFGVQSLEAYGCAH 223
Query: 505 SPWSKALENVM-----QHDIGFSA-LGGLISHL--SRLMLD-DVLRNGDILPYKVYRDCL 555
P + A + + + G A L GL S+ S ++LD RN ++L
Sbjct: 224 IPQAVAAAGAIVTYLEKMNNGLLALLTGLKSYRTSSYMVLDAHTQRNLELLQGT---RSG 280
Query: 556 RMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
+ G L LD +T G R +R I PL D+ ++ RL VE L ++ + L
Sbjct: 281 SVQGSLLGVLDRTITPMGAREMRKTITQPLLDLNELDARLGSVEELFESPALRSRFTMSL 340
Query: 615 RKLPDLERLLGRVK 628
+ D+ER+ GR++
Sbjct: 341 QVFSDMERIAGRIR 354
>gi|410297266|gb|JAA27233.1| mutS homolog 3 [Pan troglodytes]
Length = 1131
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 794 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 848
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 849 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 896
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 897 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 956
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 957 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1016
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1017 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1076
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1077 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1108
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 118/445 (26%), Positives = 189/445 (42%), Gaps = 75/445 (16%)
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
+ + E L + + AN+R +++Y P E QY +K Q+ D +L
Sbjct: 200 SNTSHENLQKTASKSANKR--------SKSIYTPLEL---------QYIEMKQQHKDAVL 242
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
+ G Y + DAEI +EL+ L I + V +LVA+GYKVG
Sbjct: 243 CVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGV 300
Query: 350 IEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------ 391
++Q ET+ +A + +S+ SRKL + T ST + + P DAV
Sbjct: 301 VKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTS 360
Query: 392 HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+LL I KE G++ G V A V + D AS + L + + P E+
Sbjct: 361 YLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVEL 420
Query: 449 IYENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKK 492
+ + L ++ + + + ++ S E + A AVT+F D ++K
Sbjct: 421 LLPS-ALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKG 479
Query: 493 LVQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
++G N + + K LE ++ F L + ++ + LR
Sbjct: 480 SQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLR 537
Query: 542 NGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EY 599
N +IL + ++ G L+ LD TS G+R L+ W+ PL + IN RLD V E
Sbjct: 538 NLEILQNQT---DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 594
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLL 624
L S V + +LRKLPD+ER L
Sbjct: 595 LHSESSVFGQIENHLRKLPDIERGL 619
>gi|364506056|pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And
Adp
gi|364506059|pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3) And
Adp
gi|364506063|pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2) And
Adp
gi|364506067|pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6) And
Adp
Length = 918
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 584 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 638
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 639 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 686
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 687 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 746
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 747 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 806
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 807 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 866
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 867 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 898
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 183/430 (42%), Gaps = 75/430 (17%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYEL 302
+ AN+R +++Y P E QY +K Q+ D +L + G Y +
Sbjct: 3 KSANKR--------SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGE 45
Query: 303 DAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKA 361
DAEI +EL+ L I + V +LVA+GYKVG ++Q ET+ +A
Sbjct: 46 DAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIG 103
Query: 362 RHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNC 401
+ +S+ SRKL + T ST + + P DAV +LL I KE
Sbjct: 104 DNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVR 163
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
G++ G V A V + D AS + L + + P E++ + L ++ +
Sbjct: 164 DKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEA 222
Query: 462 ALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---- 501
+ + ++ S E + A AVT+F D ++K ++G N
Sbjct: 223 LIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKP 282
Query: 502 -----GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
+ + K LE ++ F L + ++ + LRN +IL +
Sbjct: 283 VICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---D 337
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQ 612
++ G L+ LD TS G+R L+ W+ PL + IN RLD V E L S V +
Sbjct: 338 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 397
Query: 613 YLRKLPDLER 622
+LRKLPD+ER
Sbjct: 398 HLRKLPDIER 407
>gi|291530258|emb|CBK95843.1| DNA mismatch repair protein MutS [Eubacterium siraeum 70/3]
Length = 870
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 180/313 (57%), Gaps = 29/313 (9%)
Query: 716 NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
N + L+A + + E ++ + +++ +DVL S+AV + ++ RP++
Sbjct: 528 NDKILALEAAIFAEVREFIAQRLDLIQQTAESVAALDVLCSYAVVSIENNYC--RPMMAN 585
Query: 776 QSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPN 834
S V++IK HP N L PND+ L S+ R +++TGPN
Sbjct: 586 DS------------VIEIKDGRHPVVEKMVNEILFTPNDVYLDVKSN----RLMIITGPN 629
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
M GKST +R + V++AQ+GCFVP L + D IFTR+GA+D + G+STF+VE TE
Sbjct: 630 MSGKSTFMRQVAVIVLMAQIGCFVPASYARLGVVDRIFTRVGASDDLSAGQSTFMVEMTE 689
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHPLTKE 953
A++L +AT++SLVILDE+GRGTST+DG +IA AV + + I C+ LFATHYH L
Sbjct: 690 VATILNEATRNSLVILDEIGRGTSTYDGVSIAKAVAEYISSKAIGCKTLFATHYHEL--- 746
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
++L++ ++ S + +++ FL+++ G +SYG++VA +AG+P+KV
Sbjct: 747 ------ISLENELDGVRNYSVKVKRSGEDIKFLHKIVEGGTDDSYGIEVARLAGLPKKVT 800
Query: 1014 EAASHAALAMKKS 1026
+ A ++K+
Sbjct: 801 DRAKQLLAELEKA 813
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 179/411 (43%), Gaps = 72/411 (17%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQV 326
+K++ +QY +K+ Y D +LF+++G FYE++ DA + KEL+ +T +G C
Sbjct: 11 EKLTPMMQQYVEIKANYKDYILFYRLGDFYEMFNEDAMVASKELELTLTSRAGTPMC--- 67
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G+ + ++KL+ +G+KV EQ T++ A ++ ++ R +V +V+ T ++ ++
Sbjct: 68 GVPHHSAEGYIKKLIDKGFKVAICEQ--TTDPALSK---GLVERDIVRLVSAGTVIEASM 122
Query: 387 GPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW-VGTINDDASCAALGALLMQV 443
D ++ I G +NG+ G F D + V V N + + A Q
Sbjct: 123 LEDGSNNYISCIYVG----ENGT---GMVFADISTGEVHAVEKANSKKTDEDIIAQFSQY 175
Query: 444 SPKEVIY--------------ENR-GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488
+P E+++ NR G C Q + FS + E+T T A
Sbjct: 176 TPVELLFNAEFLNRKQAYTFIRNRYGKCSAEQLSDEDFSIDDVS-EITAQFGGT----AD 230
Query: 489 EV---------KKLVQLNGYFNGSSSPWSKALENVMQHDIG-FSALGGLISHLSRLMLDD 538
E+ + L L Y + +K + H G F LG ++ L L
Sbjct: 231 EIGLAGKDNALRALCALLRYLYKAQRSGAKRFVKLNVHSSGEFMQLG--LATRRNLELTS 288
Query: 539 VLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
+R+G+ G L+ LD TS G+R LR I PL D I R D V
Sbjct: 289 TMRSGE------------KKGSLLWVLDKTDTSMGRRKLRQCIEQPLTDTAAIIRRHDAV 336
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRV--------KARVQASSCIVLP 640
E L+ NS + + L K+ DLERL+ R+ + ++C +LP
Sbjct: 337 EALINNSAALYDIKTDLAKVYDLERLMTRIIYKAANAKDVKALGATCRILP 387
>gi|291557073|emb|CBL34190.1| DNA mismatch repair protein MutS [Eubacterium siraeum V10Sc8a]
Length = 870
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 180/313 (57%), Gaps = 29/313 (9%)
Query: 716 NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
N + L+A + + E ++ + +++ +DVL S+AV + ++ RP++
Sbjct: 528 NDKILALEAAIFAEVREFIAQRLDLIQQTAESVAALDVLCSYAVVSIENNYC--RPMMAN 585
Query: 776 QSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPN 834
S V++IK HP N L PND+ L S+ R +++TGPN
Sbjct: 586 DS------------VIEIKDGRHPVVEKMVNEILFTPNDVYLDVKSN----RLMIITGPN 629
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
M GKST +R + V++AQ+GCFVP L + D IFTR+GA+D + G+STF+VE TE
Sbjct: 630 MSGKSTFMRQVAVIVLMAQIGCFVPASYARLGVVDRIFTRVGASDDLSAGQSTFMVEMTE 689
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHPLTKE 953
A++L +AT++SLVILDE+GRGTST+DG +IA AV + + I C+ LFATHYH L
Sbjct: 690 VATILNEATRNSLVILDEIGRGTSTYDGVSIAKAVAEYISSKAIGCKTLFATHYHEL--- 746
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
++L++ ++ S + +++ FL+++ G +SYG++VA +AG+P+KV
Sbjct: 747 ------ISLENELDGVRNYSVKVKRSGEDIKFLHKIVEGGTDDSYGIEVARLAGLPKKVT 800
Query: 1014 EAASHAALAMKKS 1026
+ A ++K+
Sbjct: 801 DRAKQLLAELEKA 813
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 176/411 (42%), Gaps = 72/411 (17%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQV 326
+K++ +QY +K+ Y D +LF+++G FYE++ DA + KEL+ +T +G C
Sbjct: 11 EKLTPMMQQYVEIKANYKDYILFYRLGDFYEMFNEDAMVASKELELTLTSRAGTPMC--- 67
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G+ + ++KL+ +G+KV EQ T++ A ++ ++ R +V +V+ T ++ ++
Sbjct: 68 GVPHHSAEGYIKKLIDKGFKVAICEQ--TTDPALSK---GLVERDIVRLVSAGTVIEASM 122
Query: 387 GPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW-VGTINDDASCAALGALLMQV 443
D ++ I G G G F D + V V N + + A Q
Sbjct: 123 LEDGSNNYISCIYVGEIGT-------GMVFADISTGEVHAVEKANSKKTDEDIIAQFSQY 175
Query: 444 SPKEVIY--------------ENR-GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488
+P E+++ NR G C Q + FS + E+T T A
Sbjct: 176 TPVELLFNAEFLNRKQAYTFIRNRYGKCSAEQLSDEDFSIDDVS-EITAQFGGT----AD 230
Query: 489 EV---------KKLVQLNGYFNGSSSPWSKALENVMQHDIG-FSALGGLISHLSRLMLDD 538
E+ + L L Y + +K + H G F LG ++ L L
Sbjct: 231 EIGLAGKDNALRALCALLRYLYKAQRSGAKRFVKLNVHSSGEFMQLG--LATRRNLELTS 288
Query: 539 VLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
+R+G+ G L+ LD TS G+R LR I PL D I R D V
Sbjct: 289 TMRSGE------------KKGSLLWVLDKTDTSMGRRKLRQCIEQPLTDTAAIIRRHDAV 336
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRV--------KARVQASSCIVLP 640
E L+ NS + + L K+ DLERL+ R+ + ++C +LP
Sbjct: 337 EALINNSAALYDIKTDLAKVYDLERLMTRIIYKAANAKDVKALGATCRILP 387
>gi|227891125|ref|ZP_04008930.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741]
gi|227866999|gb|EEJ74420.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741]
Length = 876
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 28/305 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E+ A++ +DVL+SFA + P + DN L IK WHP
Sbjct: 537 ELAGAVAALDVLQSFATVSEQGHFV-----------KPELTTDNHS--LDIKDGWHPVVE 583
Query: 803 GENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
G +PNDI + +D D LL+TGPNM GKST +R L V++AQ+GCFVP +
Sbjct: 584 KVMGKQSYIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVIAQIGCFVPAK 638
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+ + D IFTR+GA D +++GESTF+VE ET L AT++SL++ DE+GRGT+T+D
Sbjct: 639 SAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFDEIGRGTATYD 698
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + I+ + LF+THYH LT S + H+ K+
Sbjct: 699 GMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKNG--------- 749
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
EL+FL+++ G +SYG+ VA +AG+P K+++ A ++ + +S+E +E
Sbjct: 750 ELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVESTESYTEEK 809
Query: 1042 SLHEE 1046
+ E+
Sbjct: 810 HIEEK 814
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 168/370 (45%), Gaps = 40/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T V
Sbjct: 6 KQTPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E +QAK ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVDKGYKVAICEQVEDPKQAKG-----MVKREVIQLVTPGTIIDES 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + +L A+ N YGFA+VD + + V +N + + L+ +
Sbjct: 121 AGEAKENNYLTALHFENNQ-------YGFAYVDLSTGELKVSVLN---TIDTILNELISL 170
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTP-----AMAVTDFLDASEVKKLVQLNG 498
KE++ ++ + E ++ + T + A D ++ EV+ + L
Sbjct: 171 RTKEIVVDS-SVNDEVLNQIKNLKILISEQNDTEDSSEVSFASQDVENSVEVEVIKHLIT 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ + ++ S + H R + ++LRN +
Sbjct: 230 YLKITQKRALSHLQRAVHYEP--SQYLKMDYHAKRNL--ELLRN---------LRTQKKS 276
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+ LDS T+ G RLL+ WI PL +++ I R +VE L+ + + + L +
Sbjct: 277 GTLLWLLDSTKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNV 336
Query: 618 PDLERLLGRV 627
DLERL G+V
Sbjct: 337 YDLERLAGKV 346
>gi|393243806|gb|EJD51320.1| DNA mismatch repair protein Msh6 [Auricularia delicata TFB-10046 SS5]
Length = 1110
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/276 (43%), Positives = 151/276 (54%), Gaps = 23/276 (8%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + ++ +D L S A AS + GA RP I V D ++ K L HP
Sbjct: 791 WLRAVRMLAELDCLFSLA-KASEAIGATCRPEI--------VESDVAS--VEFKNLKHP- 838
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
AL +PND+ LG PR +LLTGPNMGGKSTL+R T VI+AQLG +P
Sbjct: 839 ALCLKRDEFIPNDVALGGSK----PRVMLLTGPNMGGKSTLMRMTAAGVIMAQLGMLLPA 894
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ +S D I TR+GA D + + STF VE E +L++A+ SLVILDELGRGTST+
Sbjct: 895 DSARISPVDAIMTRMGAYDNMFSNSSTFKVELDECCKILKEASPKSLVILDELGRGTSTY 954
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG AIA AV ++ FATHY LT ++A HP + HMA
Sbjct: 955 DGMAIAGAVLHEIATHTLALSCFATHYSSLTDDYAYHPQIRNMHMATRVDDER------- 1007
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ELVFLY+L G S+G VA +AGVP VVE A
Sbjct: 1008 RELVFLYKLVDGVATGSFGTHVASLAGVPSDVVERA 1043
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 222/482 (46%), Gaps = 61/482 (12%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD + R P DP YD RT+YIP A K + ++Q+W +K D +LFF+ GKF+ELYE
Sbjct: 190 VRDKDGRAPSDPDYDPRTIYIPKSAWKSFTPFERQFWEIKQNQYDTVLFFQKGKFFELYE 249
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
DA IGH+E D K+T V C VG+ E D K + RG+KVG++ Q ET+ A+
Sbjct: 250 NDARIGHQEFDLKLT-ERVKMC-MVGVPEQSFDFWAVKFLMRGHKVGKVMQDETALGAEM 307
Query: 362 R---------HTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGF 412
R + ++ R L V T T VD + +A H +++ E +G +G
Sbjct: 308 RLAKTAGAKSKEDKIVRRVLNQVFTLGTLVD-PLDEEAGHCVSVVE------SGDGRFGV 360
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
+DC+ + + DD L +L + KE++ L E + L+ G+
Sbjct: 361 CVLDCSTSEFNMASFEDDPCRTKLETVLRRTRVKEMLGIKGNLTSETTRLLKTVLPGNCL 420
Query: 473 LELTPAMAVTDFLDASEVKKLVQL-----NGYFNGSSSPWSKALENVMQHDIGFSALGGL 527
+ V + ++ L +L + + +++ ++ ALG
Sbjct: 421 WTWQRSADVLSY--EQTLQALKELYPQPEDAMEEDEYAGVPQSIRTMLHERAPIEALGAT 478
Query: 528 ISHLSRLMLDD---VLRNGDILPYKVYRDCLRMDGQTL-------------------YLD 565
I++L +L LD +RN ++L L +DGQTL L
Sbjct: 479 IAYLRQLNLDKNILSMRNFNVLDPMRKGVGLLLDGQTLAHLEVLSNSDGTAEGSLLDLLG 538
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
CVT GKRL R W+C PL++ IN+RLD VE LM + A+ + +PDLERLL
Sbjct: 539 RCVTPFGKRLFRMWLCAPLREAATINDRLDAVEDLMDHPSSAEQFAKLAKGVPDLERLLT 598
Query: 626 RVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHI-IPSLSRI 684
R+ A GK +K +KV + ++ + D L + + PSL R+
Sbjct: 599 RIHA-------------GKCKVKDFLKVLLTFLQTFKGLNDKLADLENAAKLKAPSLLRL 645
Query: 685 FK 686
FK
Sbjct: 646 FK 647
>gi|449275266|gb|EMC84169.1| DNA mismatch repair protein Msh2, partial [Columba livia]
Length = 863
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/354 (33%), Positives = 189/354 (53%), Gaps = 38/354 (10%)
Query: 725 ETLSILIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
E +++ I AS ++E I I+ +D + SFA ++ + RP+IL
Sbjct: 502 EAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVIL------ 555
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
D G + +KG HP ++ +PND+ + ++TGPNMGGKST
Sbjct: 556 ----DKGQGRIVLKGARHPCVEVQDEVAFIPNDVTFEKGKQ----MFHIITGPNMGGKST 607
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T + V++AQ+GCFVPCE +++ D I R+GA D + G STF+ E ETAS+L+
Sbjct: 608 YIRQTGVIVLMAQIGCFVPCESAEVTIVDCILARVGAGDSQLKGVSTFMAEMLETASILR 667
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
A+++SL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V
Sbjct: 668 TASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTV 727
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ D L LYR+ G C +S+G+ VA +A P+ V+E+A A
Sbjct: 728 NNLHVTAL---------TSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKA 778
Query: 1021 LAMK--KSIGESFKSS---------EQRSEFSSLHEEWLKTIVNVSRVDCNSDD 1063
L ++ ++IG+S +S +R E + +E+L + + D + +D
Sbjct: 779 LELEEFQNIGKSKESDGEPPAKKFYREREEGEKIIQEFLCQVKALPLTDMSEED 832
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 138/342 (40%), Gaps = 58/342 (16%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V G +VD ++ V D+ + L ALL+Q+ PKE + E K +
Sbjct: 86 DGQRVVGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQ 145
Query: 465 KFSAGSAAL------ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD 518
G + + T V D + KK Q+N S AL M+
Sbjct: 146 VIQRGGILITDRKKADFTTKDIVQDLNRLLKSKKEEQIN----------SAALPE-MEKQ 194
Query: 519 IGFSALGGLISHLSRLMLDD-----------------VLRNGDILPYKVYRDCLRM--DG 559
+ S+L +I L L+ D+ VL N + +++ +
Sbjct: 195 VAVSSLSAIIKFL-ELLSDESNFGQFELTTFDLSQYMVLDNAAVQALNLFQSSVENANTA 253
Query: 560 QTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRK 616
Q+L L+ C T G+RL+ WI PL D I RL++VE + + E+ + + LR+
Sbjct: 254 QSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDPELRQCLQEDLLRR 313
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
PDL RL + + QA++ L + Q + ++V+ L H+ H
Sbjct: 314 FPDLNRLAKKFQR--QAAT-----LQDCYRMYQAINQLPNVVQALE--------KHEGAH 358
Query: 677 IIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+ L+ +F P+ D KFL E +D D +NH+
Sbjct: 359 QMLLLA-VFITPLNDIFSDFSKFLEMIETTLDMD--KVENHE 397
>gi|366090361|ref|ZP_09456727.1| DNA mismatch repair protein MutS [Lactobacillus acidipiscis KCTC
13900]
Length = 878
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 165/295 (55%), Gaps = 36/295 (12%)
Query: 732 ELFIEKASQWSEVIH-------AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
+LFI+ Q + I A++ +DVL+SFAV + G RP +
Sbjct: 518 QLFIDIREQIKDRIQRLQKLAAAVAKLDVLQSFAVVSE--DGHFVRPEFV---------- 565
Query: 785 DNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
G + IK WHP G VPN+I + +D LL+TGPNM GKST +R
Sbjct: 566 --SGHQIDIKQGWHPVVQKVMGKQSYVPNNISMAQDL-----TILLITGPNMSGKSTYMR 618
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
L VI+AQLGC+VP + + L D IFTR+GA D +++GESTF+VE E L+ AT
Sbjct: 619 QLALTVIMAQLGCYVPAQSAKMPLFDQIFTRIGAADDLISGESTFMVEMMEANEALKNAT 678
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+SL++ DE+GRGT+T+DG A+A A+ + +++ + LF+THYH LT + P +
Sbjct: 679 PNSLLLFDEIGRGTATYDGMALAQAIIEYVHDKVQAKTLFSTHYHELTALESELPQLKNI 738
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
H+ K+ ELVFL+++ +G SYG+ VA +AG+P+ +++ A+
Sbjct: 739 HVGAVEKNG---------ELVFLHQMQAGPADRSYGVHVAKLAGLPESLLKNAAQ 784
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 165/378 (43%), Gaps = 56/378 (14%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY VK QY D LF+++G FYE++ DA G + L+ +T +
Sbjct: 6 KRTPMMEQYMKVKEQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTSRNKNASEPIPM 65
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP T +D
Sbjct: 66 CGVPHHAAQNYIDILVDQGYKVAICEQMEDPKLAK-----DMVKREVIQLVTPGTLIDDK 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + +L A+ E S +GFA+ D + + +++ AL ++ +
Sbjct: 121 AGEAKENNYLTAVHE-------SSGKFGFAYTDLSTGELKTAELDN---VDALINEMLSL 170
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
KEV+ + K S + D E K V S
Sbjct: 171 RTKEVV-------------IDKSVTNSTITAFNSLKILLSHQDEIEEKSEVAY------S 211
Query: 504 SSPWSKALE-NVMQHDIGFSALGG--LISHLSR---------LMLDD-VLRNGDILPYKV 550
+ + LE NV+ H + + + ++H+ + L LD V RN ++L
Sbjct: 212 TQELTNKLEINVVSHLVSYLEVTQKRALAHIQKAIHYEPAQYLKLDHRVKRNLELLENS- 270
Query: 551 YRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
+ G L+ LD T+ G RLL+ WI PL + E I R ++V+ L+ N
Sbjct: 271 --RTHKKSGTLLWLLDKTKTAMGGRLLKQWIDRPLLNKEDILERQNIVQVLLDNYFERSG 328
Query: 610 VAQYLRKLPDLERLLGRV 627
+ + L ++ DLERL GRV
Sbjct: 329 LQEELSQVYDLERLAGRV 346
>gi|417788661|ref|ZP_12436344.1| DNA mismatch repair protein MutS [Lactobacillus salivarius NIAS840]
gi|418961625|ref|ZP_13513510.1| DNA mismatch repair protein MutS [Lactobacillus salivarius SMXD51]
gi|334308838|gb|EGL99824.1| DNA mismatch repair protein MutS [Lactobacillus salivarius NIAS840]
gi|380343720|gb|EIA32068.1| DNA mismatch repair protein MutS [Lactobacillus salivarius SMXD51]
Length = 876
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 168/305 (55%), Gaps = 28/305 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E+ A++ +DVL+SFA + P + DN L IK WHP
Sbjct: 537 ELAGAVAALDVLQSFATVSEQGHFV-----------KPELTTDNHS--LDIKDGWHPVVE 583
Query: 803 GENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
G +PNDI + +D D LL+TGPNM GKST +R L V++AQ+GCFVP +
Sbjct: 584 KVMGKQSYIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVIAQIGCFVPAK 638
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+ + D IFTR+GA D +++GESTF+VE ET L AT++SL++ DE+GRGT+T+D
Sbjct: 639 SAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFDEIGRGTATYD 698
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + I+ + LF+THYH LT S + H+ K+
Sbjct: 699 GMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKNG--------- 749
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
EL+FL+++ G +SYG+ VA +AG+P K+++ A ++ + +S+E +E
Sbjct: 750 ELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVESTESYTEEK 809
Query: 1042 SLHEE 1046
+ E+
Sbjct: 810 HIEEK 814
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 169/370 (45%), Gaps = 40/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T V
Sbjct: 6 KQTPMMEQYIQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E +QAK ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVDKGYKVAICEQVEDPKQAKG-----MVKREVIQLVTPGTIIDES 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+G + +L A+ N YGFA+VD + + V +N + + L+ +
Sbjct: 121 VGEAKENNYLTALHFENNQ-------YGFAYVDLSTGELKVSVLN---TIDTILNELISL 170
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTP-----AMAVTDFLDASEVKKLVQLNG 498
KE++ ++ + E ++ + T + A D ++ EV+ + L
Sbjct: 171 RTKEIVVDS-SVNDEVLNQIKNLKILISEQNDTEDSSEVSFASQDVENSVEVEVIKHLIT 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ + ++ S + H R + ++LRN +
Sbjct: 230 YLKITQKRALSHLQRAVHYEP--SQYLKMDYHAKRNL--ELLRN---------LRTQKKS 276
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+ LDS T+ G RLL+ WI PL +++ I R +VE L+ + + + L +
Sbjct: 277 GTLLWLLDSTKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNV 336
Query: 618 PDLERLLGRV 627
DLERL G+V
Sbjct: 337 YDLERLAGKV 346
>gi|330507603|ref|YP_004384031.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP6]
gi|328928411|gb|AEB68213.1| DNA mismatch repair protein MutS [Methanosaeta concilii GP6]
Length = 877
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 136/395 (34%), Positives = 203/395 (51%), Gaps = 42/395 (10%)
Query: 658 VKGLRIAMDLLMLMHKEG-----HIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFP 712
+K L+IA + + + E H++P + I K + +G ++F+T ++S
Sbjct: 459 IKSLKIAFNNVFGYYIEVSRANLHLVPQ-NYIRKQTLANG----ERFVTPELKDMESRVL 513
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPL 772
Q V+ L+ E + +L KA E A++ +DVL S A +A ++ M RP
Sbjct: 514 SAQERSVS-LEQELFYKVRDLVASKAGVIQERATALAELDVLISLATSAKENN--MIRP- 569
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTG 832
+ N + I+ HP G VPND+LL D + R ++LTG
Sbjct: 570 -----------EFNQEGRISIRSSRHPVLDKAMRGAFVPNDVLLDTDRN----RLIILTG 614
Query: 833 PNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVEC 892
PNM GKST +R L I+AQ G FVP LSL D +FTR+GA D + G+STF+VE
Sbjct: 615 PNMAGKSTFMRQIALTAIMAQTGSFVPAAYASLSLVDQVFTRVGAYDDLSAGQSTFMVEM 674
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952
TE A +L AT+ SLV+LDE+GRGTSTFDG ++A+A+ L E I C+ +FATHYH LT
Sbjct: 675 TEIAHILTSATRKSLVLLDEVGRGTSTFDGLSLAWAISEYLHESIKCKSVFATHYHQLTD 734
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
L+ + ++ S + + FL + GA +SYG+ VA +AGVP+ V
Sbjct: 735 ---------LESILSGVRNYSIAVKEDKGTITFLRTVVPGATDKSYGVHVARLAGVPRTV 785
Query: 1013 VEAASHAALAMKKSI----GESFKSSEQRSEFSSL 1043
+ A ++K G +S + S ++ L
Sbjct: 786 TKRADQILREIEKEALMQPGSGGRSQRRSSRYTQL 820
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 182/437 (41%), Gaps = 82/437 (18%)
Query: 262 IPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG 321
+PP K+S +QY+ K Y D LL F+VG FYE + DA I ++L+ ITL+
Sbjct: 1 MPP---VKLSPLMEQYYQNKKLYPDALLLFRVGDFYETFADDAVIVARDLN--ITLTSRQ 55
Query: 322 KCRQ------VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNV 375
K Q G+ +D + +L+ G+KV +Q+E + A+ ++ R + V
Sbjct: 56 KDDQGEKIPLAGVPYHSLDAYLARLIRAGHKVAICDQVEDPKLARG-----LVKRAITRV 110
Query: 376 VTPSTTVDGTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDD--- 430
VTP T ++ ++ ++ + L AI +G+ G AFVD + + +
Sbjct: 111 VTPGTIIEPSMLDESSNNFLAAIVKGDEN-------VGLAFVDVSTGEFLTTEVPHNRLY 163
Query: 431 --------ASCAALGALLMQVSPKEVIYENRGLCKEAQKAL---------RKFSAGSAAL 473
A C + +L + + +++ E + A+ AL + L
Sbjct: 164 SELARFRPAECLSAFSLHWEGTSLQILEEPCFSAERAEAALADRYGPDWKERLRLEGRGL 223
Query: 474 ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR 533
AV +L+AS L L S S +
Sbjct: 224 SQRACGAVLSYLNASRFDLLGHLKDVQIYSGSDY-------------------------- 257
Query: 534 LMLDDV-LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
++LD+V +RN +I + RD R +LD T+ G R L W+ PL+ + I
Sbjct: 258 MVLDEVTVRNLEIT--RNIRDRSRRGTLLEFLDQTRTAMGARTLARWLQMPLQSEQAIAR 315
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR--------VQASSCIVLPLIGK 644
RLD VE L S + +A+ L+ DLERLL R+ + V S+ +LP + +
Sbjct: 316 RLDGVEELASKSLLHRSLAEELKGTSDLERLLSRISCKSASPKELSVLKSTLEMLPRLQE 375
Query: 645 KVLKQQVKVFGSLVKGL 661
++ Q S ++ L
Sbjct: 376 ILMDDQSSAQSSYLQDL 392
>gi|109077790|ref|XP_001110439.1| PREDICTED: DNA mismatch repair protein Msh3 [Macaca mulatta]
Length = 1124
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 177/331 (53%), Gaps = 22/331 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 788 VLDCSAEWLDFL-EKFSEHYHYLCKAVHHLATVDCIFSLAKVAK--QGNYCRPTV--QEE 842
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L EDS+ R +++TGPNMGGK
Sbjct: 843 RKIIIKNGRHPVIDV-------LLGEQDQY-VPNSTDLSEDSE----RVMIITGPNMGGK 890
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 891 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 950
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 951 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1010
Query: 959 H-VTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H V HM + G+++ + FLY++T G SYGL VA +A +P +++
Sbjct: 1011 HQVGNYHMGFLVSEDESKLDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADIPGEIL 1070
Query: 1014 EAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
+ A+H + ++ I K + ++ ++H
Sbjct: 1071 KKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1101
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 118/443 (26%), Positives = 187/443 (42%), Gaps = 75/443 (16%)
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
+ + E L + + AN+R +++Y P E QY +K Q+ D +L
Sbjct: 194 SNTSHENLQKTASKPANKR--------SKSIYTPLEL---------QYIEMKQQHKDAVL 236
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
+ G Y + DAEI +EL+ L I + V +LVA+GYKVG
Sbjct: 237 CVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGV 294
Query: 350 IEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------ 391
++Q ET+ +A + +S+ SRKL + T ST + + P DAV
Sbjct: 295 VKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTS 354
Query: 392 HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+LL I KE G V G V A V + D AS + L + + P E+
Sbjct: 355 YLLCISENKENVRDKKKGIVFIGIVGVQPATGEVVFDSFQDSASRSELETRMSNLQPVEL 414
Query: 449 IYENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKK 492
+ + L ++ + + + ++ S E + A AVT+F D ++K
Sbjct: 415 LLPS-ALSEQTEMLIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKG 473
Query: 493 LVQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
++G N + + K LE ++ F L + ++ + LR
Sbjct: 474 SQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLR 531
Query: 542 NGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EY 599
N +IL + ++ G L+ LD TS G+R L+ W+ PL + IN RLD V E
Sbjct: 532 NLEILQNQT---DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 588
Query: 600 LMKNSEVVMVVAQYLRKLPDLER 622
L S V + +LRKLPD+ER
Sbjct: 589 LHSESSVFGQIENHLRKLPDIER 611
>gi|255036742|ref|YP_003087363.1| DNA mismatch repair protein MutS [Dyadobacter fermentans DSM 18053]
gi|254949498|gb|ACT94198.1| DNA mismatch repair protein MutS [Dyadobacter fermentans DSM 18053]
Length = 864
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 197/375 (52%), Gaps = 55/375 (14%)
Query: 712 PDYQNHDVTDLDAETLSILIEL-----FIEKASQWSEVIH----AISCIDVLRSFAVTAS 762
P+ + ++ ++AE IE ++KA+++ I IS +DVL SFA+ A
Sbjct: 501 PELKEYEEKIMNAEDRISAIEFRIFSELVQKAAEFVGAIQQNALVISALDVLSSFALAAR 560
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGGLPVPNDILLG 817
+ A +P+I + G L IK HP +GE+ VPND+ L
Sbjct: 561 KNKYA--KPVI------------SEGNELDIKEGRHPVIEQQLPVGES---YVPNDVYL- 602
Query: 818 EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGA 877
DD + +++TGPNM GKS LLR T L V++AQ+G FVP + + D +FTR+GA
Sbjct: 603 ---DDSSQQIIIITGPNMAGKSALLRQTALIVLMAQMGSFVPARSATVGIVDKVFTRVGA 659
Query: 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI 937
+D + GESTF+VE TETAS+L + SLV++DE+GRGTST+DG +IA+A+ L +
Sbjct: 660 SDNLSRGESTFMVEMTETASILNNLSSKSLVLMDEIGRGTSTYDGVSIAWAITEYLHNQS 719
Query: 938 NCR--LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACP 995
+CR LFATHYH L + P + ++A + D ++VFL +L G
Sbjct: 720 DCRPKTLFATHYHELNQLAEDFPRIKNFNVAV---------KEVDNKVVFLRKLKPGGSA 770
Query: 996 ESYGLQVAVMAGVPQKVVEAAS---------HAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
S+G+ VA +AG+PQ +V AS H A KK + + K++ Q S F
Sbjct: 771 HSFGIHVAQIAGMPQPIVLRASEIMQHLEKDHVAHEHKKRVKDIPKNNFQLSIFEPADPR 830
Query: 1047 WLKTIVNVSRVDCNS 1061
+ + VD N+
Sbjct: 831 LDELKEKLLLVDVNT 845
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 110/421 (26%), Positives = 172/421 (40%), Gaps = 68/421 (16%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ--V 326
K + KQY +K++Y LL F+VG FYE + DA K L +T G +
Sbjct: 6 KETPLNKQYNQIKAKYPGALLLFRVGDFYETFGEDAVRASKILGIVLTRRNNGGAHEELA 65
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G +D+ + KLV G +V +QLE AK ++ R + +VTP + + +
Sbjct: 66 GFPHHSLDNYLPKLVRAGERVAICDQLEDPAAAKG-----IVKRGVTELVTPGVSFNDNV 120
Query: 387 GPDAVHLLAIKEGN------CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
L I++ N G D +YG AF+D + N A + +L
Sbjct: 121 -------LDIRKNNYLAAVHVGSDG---LYGIAFLDISTGEFMASQGN----AAYIDKML 166
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGSA-ALELTPAMAVTDFLDASEVKKLVQLNGY 499
P EV+Y CK+ ++ + G L D+ QL G+
Sbjct: 167 QGFGPAEVLY-----CKKHKQEFNELFGGKYHTFHLEDWCFGYDY-------GYEQLTGH 214
Query: 500 FNGS--------SSPWSKALENVMQHDIGFSALGGLISHLSRLM---------LDD-VLR 541
F + S P V+ H + + ++H+SR+ LD +R
Sbjct: 215 FQTTTLKGYGVESLPLGIIAAGVVLHYLRETE-HKEVAHISRITRLEEEKYVWLDRFTVR 273
Query: 542 NGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
N +++ + +D LD VT G R LR W+ PLKD I RL VE+ +
Sbjct: 274 NLELVYAQQEGGVPLID----ILDHTVTPMGARQLRKWMVLPLKDKAPIEERLSAVEHFL 329
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRVKA-RVQASSCIVLPLIGKKVLKQQVKVFGSLVKG 660
+ E+ + Y +++ DLERL+ +V R+ + L KK LKQ V L G
Sbjct: 330 ASEELHESLVGYFKQIGDLERLISKVAVRRINPRELVQL----KKSLKQVAPVKQLLAGG 385
Query: 661 L 661
+
Sbjct: 386 I 386
>gi|118361141|ref|XP_001013801.1| MutS domain III family protein [Tetrahymena thermophila]
gi|89295568|gb|EAR93556.1| MutS domain III family protein [Tetrahymena thermophila SB210]
Length = 1139
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 166/336 (49%), Gaps = 69/336 (20%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTA-----------SMSSGAMHRPLI--------- 773
FIE+ + + I + C+ V R +M+ G M RP+I
Sbjct: 801 FIEELEEQLKEILSNFCVTVFRDIVAELDCLISISHACFTMADGVMCRPVIKFAKNQKET 860
Query: 774 ---LPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSD-DCLPRTLL 829
L Q +NP + Q L +K VPNDI+LG + + P ++
Sbjct: 861 FFYLKQGRNPNLIQ------LDLK--------------QVPNDIILGNIAGMNAQPNIMI 900
Query: 830 LTGPNMGGKSTLLRATCLAVILAQLG------------------CFVPCEMCVLSLADTI 871
LTGPNMGGKST LR CL+ ILAQ+G C+VP E C SL D I
Sbjct: 901 LTGPNMGGKSTTLRLFCLSAILAQIGIYFRNYQNFKLILQLKQGCYVPAEQCEFSLVDRI 960
Query: 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931
FTR+GA D+++ G+STF +E E + + T +S+ I DELGRGTSTFDG AIA+ + +
Sbjct: 961 FTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNSIAIFDELGRGTSTFDGVAIAFGILK 1020
Query: 932 QLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTS 991
+E+I R +FATH+ L E + ++ HM + + S ++L+F Y+L
Sbjct: 1021 YFIEKIQSRCIFATHFFLLINELRFYKEISFYHMEYYYDNKS-------KKLIFKYKLKQ 1073
Query: 992 GACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G S+G+ +A + G+ Q V+ A L + S+
Sbjct: 1074 GNAESSFGIDLAKIVGIEQSVLNLAQKKQLEFENSL 1109
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 71/449 (15%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRP-DDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQ 283
EE+ + KF + R +R+ P +P YD TLYIPP+ K++++ KQYW +K++
Sbjct: 182 EEQLNQIPKFA---QQRYRKDSRQIPFGNPQYDPTTLYIPPQEFSKLTSAMKQYWQIKAK 238
Query: 284 YMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVAR 343
+ D ++ FK+GKFYEL+ DA I + LD T K G E ++ KLV
Sbjct: 239 HFDKIILFKMGKFYELFYEDAIIATRLLDITFT----NKELHCGFPEKALEKFASKLVQF 294
Query: 344 GYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GPDAVHLLAIKEGN 400
GYKV + EQ + T ++ R + ++T T++ T D +LL I++
Sbjct: 295 GYKVVVV------EQTSKKTTTGIVDRDITQIITKG-TINFTFEEQNHDPKYLLVIRQ-K 346
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ G +VY + ++ VG + DD + L + L P+E++Y+ + +
Sbjct: 347 TNQEFGIIVY-----ESFTSKIQVGLLQDDKTQTRLKSFLCVTKPQEIVYDPGNITSDIL 401
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD-- 518
K L+ S ++P D S + F + + L ++ +D
Sbjct: 402 KILKSQYFQSV---MSPMRDNKD--QWSTQLATFYIEKQFGSEVQKYPQELRDIRTNDEI 456
Query: 519 ------IGFSALGGLISHL-SRLMLDDVLRNGDILP----YKVYRDCLRMDGQTL----- 562
+ ++AL G S++ S L L+ +L + + + K + + +D Q L
Sbjct: 457 RGQVINLKYAALAGFFSYMDSTLQLESILNSSEYVECDFDNKQFSQRMILDSQALQHLEI 516
Query: 563 ------------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
YLD T GKR+L+ W+C PL D+ IN+R D +E
Sbjct: 517 FENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCSPLIDISAINDRYDAIE 576
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ N + + + D+ERL +
Sbjct: 577 DIQNNLAMKDKFQYGIARYADIERLCSSI 605
>gi|255954341|ref|XP_002567923.1| Pc21g08840 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589634|emb|CAP95781.1| Pc21g08840 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1130
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 159/298 (53%), Gaps = 21/298 (7%)
Query: 733 LFIEKASQWS---EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L + A+Q+ + I +++ +D L S A A P P ++ G
Sbjct: 808 LLADIAAQYQSFRDCIQSLATLDCLLSLAEIAQQ-----------PGYVKPEYTEEAG-- 854
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
L I+ HP VPND L D R LL+TGPNMGGKS+ +R L
Sbjct: 855 -LHIEQGRHPMVEQLLTDTYVPNDTNLQHDGT----RALLVTGPNMGGKSSYVRQVALIA 909
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +VP L L D +FTR+GA D ++ GESTF+VE +ETA +L++AT SLVI
Sbjct: 910 IMAQIGSYVPASSARLGLLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVI 969
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTST DG AIA AV +V I LF THY L++ S P L+++ F
Sbjct: 970 LDELGRGTSTHDGVAIAQAVLDHMVRSIQSLTLFITHYQHLSRMVHSFPDKALRNVHMRF 1029
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
GD+E+ FLY + G SYGL VA +A +P V++ A + +++SI
Sbjct: 1030 TETGNKDKDGDEEITFLYEVAEGVAHRSYGLNVARLANLPPAVIDIARQKSAELEESI 1087
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 177/426 (41%), Gaps = 76/426 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ +KQ +K Q MD +L +VG + + DA KEL D +
Sbjct: 208 KLTPMEKQVIEIKRQNMDTVLVIEVGYKFRFFGEDARTAAKELGIVCIPGKFRFDEHPSE 267
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ +G+ I + V++LV G+KVG + Q+ET+ +A + N+ RKL N+
Sbjct: 268 AHIGRFASASIPVHRLHVHVKRLVTAGHKVGVVRQIETAALKAAGDNRNAPFVRKLTNLY 327
Query: 377 TPSTTVDGTIGPDAV------------HLLAIKEGNC-GPDNGSVVY-GFAFVDCAALRV 422
T T +D G ++L + E N GP N V+ G V A V
Sbjct: 328 TKGTYIDDAEGLQGPAPAAGGASPATGYMLCMTETNAKGPGNDERVHVGIVAVQPATGDV 387
Query: 423 WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT 482
D + + L+ ++P E++ G A + L + +GS A+
Sbjct: 388 IYDDFEDGFMRSEIETRLLHIAPCEILIV--GEMSRASEKLVQHLSGSKMNVFGDAVR-- 443
Query: 483 DFLDASEVKKLV------QLNGYFNGSSSPWS--------KALENVM----QHDIGFSAL 524
L+ ++ KK ++G++ G S K L+NV+ Q I SA+
Sbjct: 444 --LERAQRKKTSAAEAHSHVSGFYAGKMKATSTEEDTQAVKLLQNVLGLPEQVTICLSAM 501
Query: 525 GGLISHLSRLMLDDV----------------LRNGDIL-PYKVYRDC--LRMDGQTLY-L 564
I H++ L V L NG+ L ++Y++ L G + L
Sbjct: 502 ---IEHMTEYGLQHVFDLTKYFQPFSARSHMLLNGNTLVNLEIYQNQTDLSTRGSLFWTL 558
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLE 621
D T G+R+LR W+ PL D + R + VE L+ + + V V LRK+ DLE
Sbjct: 559 DRTHTRFGQRMLRQWVGRPLLDKVCLQERTNAVEELIDPARAIPVERVRGLLRKVKSDLE 618
Query: 622 RLLGRV 627
R L R+
Sbjct: 619 RSLIRI 624
>gi|426384231|ref|XP_004058675.1| PREDICTED: DNA mismatch repair protein Msh3 [Gorilla gorilla gorilla]
Length = 1128
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 166/308 (53%), Gaps = 23/308 (7%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 791 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 845
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 846 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 893
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 894 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 953
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 954 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1013
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1014 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1073
Query: 1013 VEAASHAA 1020
++ A+H +
Sbjct: 1074 LKKAAHKS 1081
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 118/445 (26%), Positives = 189/445 (42%), Gaps = 75/445 (16%)
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
+ + E L + + AN+R +++Y P E QY +K Q+ D +L
Sbjct: 197 SNTSHENLQKTSSKSANKR--------SKSIYTPLEL---------QYIEMKQQHKDAVL 239
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
+ G Y + DAEI +EL+ L I + V +LVA+GYKVG
Sbjct: 240 CVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGV 297
Query: 350 IEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------ 391
++Q ET+ +A + +S+ SRKL + T ST + + P DAV
Sbjct: 298 VKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTS 357
Query: 392 HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+LL I KE G++ G V A V + D AS + L + + P E+
Sbjct: 358 YLLCISENKENIRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVEL 417
Query: 449 IYENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKK 492
+ + L ++ + + + ++ S E + A AVT+F D ++K
Sbjct: 418 LLPS-ALSEQTETLIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKG 476
Query: 493 LVQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
++G N + + K LE ++ F L + ++ + LR
Sbjct: 477 SQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLR 534
Query: 542 NGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EY 599
N +IL + ++ G L+ LD TS G+R L+ W+ PL + IN RLD V E
Sbjct: 535 NLEILQNQT---DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 591
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLL 624
L S V + +LRKLPD+ER L
Sbjct: 592 LHSESSVFGQIENHLRKLPDIERGL 616
>gi|256078665|ref|XP_002575615.1| hypothetical protein [Schistosoma mansoni]
gi|360043417|emb|CCD78830.1| hypothetical protein Smp_042670.2 [Schistosoma mansoni]
Length = 1116
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 182/340 (53%), Gaps = 44/340 (12%)
Query: 723 DAETLSILIELFI---EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
DA SI+ +F E + W + ++ +D + + + ++ +S M P + + +
Sbjct: 754 DASLRSIMQHIFSSFSESFTHWHMAMSCLAELDCIIALYLYSTNASDVMCLPEFIDLNSS 813
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRT----------- 827
P+L+I HP + +GG + NDI LG S T
Sbjct: 814 TE-------PLLEIVDGIHPCLINTFSGGDIISNDIKLGTTSSMINSPTQHHTLHDMFNN 866
Query: 828 ---LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
+L+TGPNMGGKSTL+R L VILA LGC +P + C L+ D IF+RLGA+DR+++G
Sbjct: 867 ASVILVTGPNMGGKSTLMRQAALLVILAHLGCRIPAKSCKLTPVDRIFSRLGASDRMLSG 926
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE---RI---- 937
ESTFLVE +ETAS+L T SLV++DELGRGTST DG A+A AV L + R
Sbjct: 927 ESTFLVELSETASILHHITPHSLVLMDELGRGTSTHDGSALAGAVVSYLAKPNGRFFNGS 986
Query: 938 NCRLLFATHYHPLTKEFA-----------SHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
R LF+THYH L + A +H + L HMAC ++ SE+ + G + + FL
Sbjct: 987 GPRTLFSTHYHSLVDQVANKDRSTSDEDINHLCIGLGHMACMVEAESES-TNGLENITFL 1045
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
Y+ GACP+SYG A +A +P KV+ A +K+
Sbjct: 1046 YKFIPGACPKSYGFNAARLAMLPDKVIRLGLAKAKEFEKT 1085
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 151/514 (29%), Positives = 227/514 (44%), Gaps = 91/514 (17%)
Query: 199 KKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTS----KFEWLDPSKIRDANRRRPDDPL 254
++N ++ + LL+ SV N E ++ S +L+PSKI+D N RRPD P
Sbjct: 53 RQNGKKINEATDESLLETSVVAQVNEAFEDESVSWTHLSLPFLEPSKIKDINGRRPDHPE 112
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD TLY+P E K + +Q+W +KS+Y DV+LFFKVGKFYE+Y +DA IG KEL
Sbjct: 113 YDSHTLYVPEEFKTKQTPGMRQWWELKSRYTDVILFFKVGKFYEMYHMDAMIGVKELGLV 172
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR-----HTNSVIS 369
C G E ++LV +GYKV RIEQ E+ + R + V+
Sbjct: 173 FMKGSFAHC---GFPEVAFPRMADQLVRKGYKVARIEQTESIDAMNERCKRKSSSEKVVR 229
Query: 370 RKLVNVVTPSTTVDGT------IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW 423
R++ ++TP T T PD+ LLA+ E + G + +G ++ + ++
Sbjct: 230 REVCQIITPGTCTASTRDLINLAHPDSF-LLAVVESH-GDKSYPFAFGIGLLNASTGKIN 287
Query: 424 VGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPA---- 478
+G DD C+ L L P +++ E RG A K+L K S E LTP
Sbjct: 288 IGQFLDDRHCSRLRTFLSHYPPNQLLIE-RGTAGSAIKSLIKTSLSCVPTEFLTPTKQFW 346
Query: 479 --------MAVTDFLDASEVKKLVQLNGYFNGSSSP----WSKALENVMQHD-------- 518
+ D+ V N SS P W L N++ D
Sbjct: 347 SAKNTVQELETADYFPKQTSNTTVDSNHVSKVSSFPDKENWPDVLLNMLSEDDPLGRTVK 406
Query: 519 ----IGFSALGGLISHLSRLMLD-DVLRNGDILPY-----------------KVYRDC-- 554
+ F LG LI +L ++D +VL G I Y +++ D
Sbjct: 407 SEWELAFRCLGALIYYLRYCLIDREVLSLGFIDVYVPIDMKNANSQRSPGSIELFYDTQS 466
Query: 555 -LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
+ +D TL L++C T G+RLLR WI P + I R
Sbjct: 467 QMVLDNITLSNLDIIRNNVDGSQEGSLLQRLNTCCTFFGRRLLRQWITAPPCNPNVIRQR 526
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+E L+ S+++ + + L +LPDLERL+ ++
Sbjct: 527 QLAIENLISISDIIPKLREKLAQLPDLERLITKI 560
>gi|325110084|ref|YP_004271152.1| DNA mismatch repair protein MutS [Planctomyces brasiliensis DSM 5305]
gi|324970352|gb|ADY61130.1| DNA mismatch repair protein MutS [Planctomyces brasiliensis DSM 5305]
Length = 925
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 182/324 (56%), Gaps = 42/324 (12%)
Query: 712 PDYQNHD--VTDLDAETLSILIELF-------IEKASQWSEVIHAISCIDVLRSFAVTAS 762
P + H+ V D ++L++ E+F ++ + + ++ +DVL SFA TA+
Sbjct: 554 PQLKEHEEKVLSADQQSLALETEIFQQLRERVADQLQRLQQSAETLAELDVLGSFAHTAA 613
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNG-GPVLKIKGLWHPFALGENGGLPVPNDILLGE--- 818
+ RP++ +++P +R +G PVL H G+ VPNDI LG+
Sbjct: 614 --NNDFCRPVL---TESPVLRVVDGRHPVLD-----HILPRGQF----VPNDIHLGQPEK 659
Query: 819 ---DSDDCLP---RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
D + LP R ++TGPNM GKST +R L +LAQ G FVP + L D IF
Sbjct: 660 AEADEESTLPDAGRVQIITGPNMAGKSTYIRQAALVTLLAQAGSFVPAREATVGLVDRIF 719
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
R+GA+D + G+STF+VE TETA +L AT SLVILDE+GRGTST+DG ++A+AV
Sbjct: 720 ARVGASDELSKGQSTFMVEMTETARILNTATNRSLVILDEIGRGTSTYDGLSLAWAVTEY 779
Query: 933 LVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSG 992
L + I R LFATHYH LT+ L+ A ++ + + + D +++FL+++ G
Sbjct: 780 LHDTIGARTLFATHYHELTE---------LEQTLSAVRNWNVSVYEKDGDVIFLHKIVPG 830
Query: 993 ACPESYGLQVAVMAGVPQKVVEAA 1016
A SYG+ VA +AGVP V+ A
Sbjct: 831 AADRSYGIHVARLAGVPTDVLRRA 854
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 174/383 (45%), Gaps = 51/383 (13%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K++ ++++ VK Q+ D LL F++G FYEL+ DA I K L +T G +
Sbjct: 50 KLTPMMERFFEVKRQHPDSLLLFRMGDFYELFYDDAVIAAKILGLTLTSRDKGSANPISM 109
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDG 384
G +D+ ++KL+ G++ +Q+E +QAK ++ R++ +VTP T T D
Sbjct: 110 AGFPYHSLDNYLQKLIRNGHRAAICDQVEDPKQAKG-----LVKREVTRIVTPGTLTEDA 164
Query: 385 TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
+ P + LA C + G A+++ + R + ++ D L L ++
Sbjct: 165 LLDPRQNNYLA---AVCLYKKTA---GLAWLELSTGRFQLAEVDPD----NLSDELSRLH 214
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTD-----FLDASEVKKLVQ---- 495
P E+ L + Q+ + ++ S AL P M +T+ F ++L +
Sbjct: 215 PAEL------LINQEQRDDERLASASLAL---PHMLMTERPPWSFAGEQPYEQLCKHFRV 265
Query: 496 --LNGY-FNGSSSPWSKA---LENVMQHDIGFSALGGL-----ISHLSRLMLDDVLRNGD 544
L G+ G S+ + A LE V + +A+ + S RL++D+ R
Sbjct: 266 RSLEGFDIEGPSTAVTAAGVLLEYV--QETQRTAIDHIRRIEPYSPEERLLIDEATRRSL 323
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
L + + R+ R +D VT+ G RL+ WI +PL + + I R D VE L+ N
Sbjct: 324 ELTHTL-REGKRQGTLLDVIDETVTAMGARLIGEWISNPLTNRQHITRRADAVEELVGNP 382
Query: 605 EVVMVVAQYLRKLPDLERLLGRV 627
++ + L DL+RL RV
Sbjct: 383 LLLNEFREQLDNTYDLQRLATRV 405
>gi|90086235|dbj|BAE91670.1| unnamed protein product [Macaca fascicularis]
Length = 583
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 177/331 (53%), Gaps = 22/331 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 247 VLDCSAEWLDFL-EKFSEHYHYLCKAVHHLATVDCIFSLAKVAK--QGNYCRPTV--QEE 301
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L EDS+ R +++TGPNMGGK
Sbjct: 302 RKIIIKNGRHPVIDV-------LLGEQDQY-VPNSTDLSEDSE----RVMIITGPNMGGK 349
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 350 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 409
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 410 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 469
Query: 959 H-VTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H V HM + G+++ + FLY++T G SYGL VA +A +P +++
Sbjct: 470 HQVGNYHMGFLVSEDESKLDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADIPGEIL 529
Query: 1014 EAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
+ A+H + ++ I K + ++ ++H
Sbjct: 530 KKAAHKSKELEGLINTKRKRLKYFAKLWTMH 560
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQ 612
++ G L+ LD TS G+R L+ W+ PL + IN RLD V E L S V +
Sbjct: 1 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 60
Query: 613 YLRKLPDLER 622
+LRKLPD+ER
Sbjct: 61 HLRKLPDIER 70
>gi|320101926|ref|YP_004177517.1| DNA mismatch repair protein MutS [Isosphaera pallida ATCC 43644]
gi|319749208|gb|ADV60968.1| DNA mismatch repair protein MutS [Isosphaera pallida ATCC 43644]
Length = 896
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 155/258 (60%), Gaps = 17/258 (6%)
Query: 789 PVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
P+LKI HP + G +PND+ LG DS L LLTGPNM GKST +R +
Sbjct: 581 PILKIVAGRHPVLDILMPEGRFIPNDLDLGGDSGTIL----LLTGPNMAGKSTYIRQAAV 636
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
ILAQ+G F+P + + L D IF R+GA+D + G+STF+VE TETA++L AT SL
Sbjct: 637 LCILAQMGSFLPVKSATIGLVDRIFARVGASDELGRGQSTFMVEMTETANILHNATARSL 696
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDE+GRGTSTFDG ++A+A+ L + I CR LFATHYH L V L+ +
Sbjct: 697 VILDEIGRGTSTFDGVSLAWAIAEYLHDVIGCRALFATHYHEL---------VDLETVKP 747
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH--AAL-AMK 1024
++ + + + + E+VFL+R+ G +SYG+ VA +AGVP V+E A A L A
Sbjct: 748 GLRNANVSVLEQNGEIVFLHRIVPGGADQSYGIHVARLAGVPNPVLERAKAILAQLEAQH 807
Query: 1025 KSIGESFKSSEQRSEFSS 1042
+ +GES S + SS
Sbjct: 808 RRMGESAAHSHSDASRSS 825
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 175/400 (43%), Gaps = 78/400 (19%)
Query: 265 EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL--SGVGK 322
+A+ + +QY +K++ + LL F++G FYE++ DAE + L +T G
Sbjct: 2 DAIADATPMMRQYRELKARDPEALLLFRMGDFYEMFGDDAERAGELLGLTVTSRDKGPNA 61
Query: 323 CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
G ++ + KLVA G + EQ+E + AK ++ R++V +VTP T
Sbjct: 62 VPMAGFPHPALESYLAKLVAAGVRAAVCEQVEDPKTAK-----GLVKREIVRIVTPGTLT 116
Query: 383 D-GTIGPDAV-HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGT-----INDDASCAA 435
D + P A HL A+ E G A+V+ + R + + I D+
Sbjct: 117 DEALLDPRASNHLAAVVEVKGK-------LGLAWVELSTARFTLTSTHRLEIQDE----- 164
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLV- 494
+ +++P E++ + +ALR A + + +TP + DFL A + ++L+
Sbjct: 165 ----IARLAPAELLIAETAVDAPWVRALR---AAAPGMTITPRPS-WDFL-ADQARQLLC 215
Query: 495 ------QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS-----------HLSRLM-- 535
L+G+ V I A G L++ HL RL
Sbjct: 216 EQFRVSTLSGF-------------GVNDDAIEIQAAGALLAYLRETQKSALLHLRRLHVH 262
Query: 536 -------LDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDV 587
LD+ R G L + R+ R DG L+ +D VT G RLL W+ PL ++
Sbjct: 263 RREEVLGLDETTRRGLEL-TRTLREGKR-DGSLLHAIDLTVTPMGARLLAEWLNAPLTNL 320
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + R D V L++++ + + + L + DLERL GR+
Sbjct: 321 DALRRRHDAVGDLVEDAALREELRRGLATIQDLERLAGRM 360
>gi|257066441|ref|YP_003152697.1| DNA mismatch repair protein MutS [Anaerococcus prevotii DSM 20548]
gi|256798321|gb|ACV28976.1| DNA mismatch repair protein MutS [Anaerococcus prevotii DSM 20548]
Length = 868
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 187/334 (55%), Gaps = 41/334 (12%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
+ DL+ + + E ++ + + ++ +D L +FA + +S
Sbjct: 530 INDLEYKIFQEIREKVLKNTIKLQALAKILATVDTLNTFAKISLENSYV----------- 578
Query: 779 NPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
P +R+DN ++KIK HP L EN +PND +GE+++ ++TGPNM
Sbjct: 579 RPVIREDN---IIKIKDGRHPVIERKLKENEF--IPNDTDIGEENN----LIQIITGPNM 629
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GKST +R + +ILAQ+GCFVP + +S+ D +FTR+GA+D I GESTF++E E
Sbjct: 630 AGKSTYMRQMAIIIILAQMGCFVPASLAEISICDQVFTRIGASDNISKGESTFMLEMNEV 689
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT---K 952
+S+L+ +T+ S VILDE+GRGTS+ DG +IA A+ L +R + +FATH+H LT K
Sbjct: 690 SSILKNSTEHSFVILDEVGRGTSSDDGLSIAMAIVEYLSKRKKVKTVFATHFHELTILEK 749
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
E + ++ ++ + + + LVFL +++ G SYG++VA ++G+P ++
Sbjct: 750 ELDNVKNLKIEIL------------EENNNLVFLRKISEGKSDRSYGIEVAKLSGLPNEI 797
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
++ +A + M K + F +++ E S+ EE
Sbjct: 798 ID---NAKIIMDKLSTDDFYDLDKKKEISTSLEE 828
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 160/390 (41%), Gaps = 64/390 (16%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQ 325
K++ K Y +VK+ + D +L ++VG FYE + DA I K L +T G K
Sbjct: 9 KLTPMLKHYVDVKNDFKDAILLYRVGDFYEAFFDDAIITSKALSLTLTGKECGHEKKAPM 68
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-- 383
G+ ID+ KLV +GYKV +Q+E ++AK ++ R + V+TP T D
Sbjct: 69 CGVPHHVIDNYAFKLVKQGYKVALCDQVEDPKEAKG-----LVKRAITRVITPGTITDME 123
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL--LM 441
+LL+I + + G ++ D + ++ I +S A+ +
Sbjct: 124 SLDNRKNNYLLSIFQNDYG-------LSISYCDISTGKLVSFEIKGLSSSIGKKAIDQIE 176
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL-NGYF 500
+++P E++ + + LR++ FLD +Q Y
Sbjct: 177 KINPSEILINSDF----NDQNLRRY-----------------FLDEEIFVNYIQNPKDYM 215
Query: 501 NGSS----SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDC 554
N +S L+ + + +L L+ ++ + D++ + N DIL Y +
Sbjct: 216 NRASLIRDHLGDDNLKKIENMRLSILSLANLLDYIYKYHKDNLVHINNIDILEINDYMEL 275
Query: 555 LRMDGQTLYL-----------------DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
+ L L D T G R++ ++ PL D I RLD+V
Sbjct: 276 EASTRKNLELSKNLNNNTKENSLLSIIDKADTVMGSRMISEYLERPLIDKRKIERRLDIV 335
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
E L + + ++ L + DLERL+ ++
Sbjct: 336 EVLFNDRILASNISNLLSDVYDLERLIAKI 365
>gi|167750508|ref|ZP_02422635.1| hypothetical protein EUBSIR_01484 [Eubacterium siraeum DSM 15702]
gi|167656434|gb|EDS00564.1| DNA mismatch repair protein MutS [Eubacterium siraeum DSM 15702]
Length = 870
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 179/313 (57%), Gaps = 29/313 (9%)
Query: 716 NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
N + L+A + + E + + +++ +DVL S+AV + ++ RP++
Sbjct: 528 NDKILALEAAIFAEVREFIARRLDLIQQTAESVAALDVLCSYAVVSIENNYC--RPMMAN 585
Query: 776 QSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPN 834
S V++IK HP N L PND+ L S+ R +++TGPN
Sbjct: 586 DS------------VIEIKDGRHPVVEKMVNEILFTPNDVYLDVKSN----RLMIITGPN 629
Query: 835 MGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTE 894
M GKST +R + V++AQ+GCFVP L + D IFTR+GA+D + G+STF+VE TE
Sbjct: 630 MSGKSTFMRQVAVIVLMAQIGCFVPASYARLGVVDRIFTRVGASDDLSAGQSTFMVEMTE 689
Query: 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHPLTKE 953
A++L +AT++SLVILDE+GRGTST+DG +IA AV + + I C+ LFATHYH L
Sbjct: 690 VATILNEATKNSLVILDEIGRGTSTYDGVSIAKAVAEYISSKAIGCKTLFATHYHEL--- 746
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
++L++ ++ S + +++ FL+++ G +SYG++VA +AG+P+KV
Sbjct: 747 ------ISLENELDGVRNYSVKVKRSGEDIKFLHKIVEGGTDDSYGIEVARLAGLPKKVT 800
Query: 1014 EAASHAALAMKKS 1026
+ A ++K+
Sbjct: 801 DRAKQLLAELEKA 813
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 179/411 (43%), Gaps = 72/411 (17%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQV 326
+K++ +QY +K+ Y D +LF+++G FYE++ DA + KEL+ +T +G C
Sbjct: 11 EKLTPMMQQYVEIKANYKDYILFYRLGDFYEMFNEDAMVASKELELTLTSRAGTPMC--- 67
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G+ + ++KL+ +G+KV EQ T++ A ++ ++ R +V +V+ T ++ ++
Sbjct: 68 GVPHHSAEGYIKKLIDKGFKVAICEQ--TTDPALSK---GLVERDIVRLVSAGTVIEASM 122
Query: 387 GPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW-VGTINDDASCAALGALLMQV 443
D ++ I G +NG+ G F D + V V N + + A Q
Sbjct: 123 LEDGSNNYISCIYVG----ENGT---GMVFADISTGEVHAVEKANSKKTDEDIIAQFSQY 175
Query: 444 SPKEVIY--------------ENR-GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488
+P E+++ NR G C Q + FS + E+T T A
Sbjct: 176 TPVELLFNAEFLNRKQAYTFIRNRYGKCSAEQLSDEDFSIDDVS-EITAQFGGT----AD 230
Query: 489 EV---------KKLVQLNGYFNGSSSPWSKALENVMQHDIG-FSALGGLISHLSRLMLDD 538
E+ + L L Y + +K + H G F LG ++ L L
Sbjct: 231 EIGLAGKDNALRALCALLRYLYKAQRSGAKRFVKLNVHSSGEFMQLG--LATRRNLELTS 288
Query: 539 VLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
+R+G+ G L+ LD TS G+R LR I PL D I R D V
Sbjct: 289 TMRSGE------------KKGSLLWVLDKTDTSMGRRKLRQCIEQPLTDTAAIIRRHDAV 336
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRV--------KARVQASSCIVLP 640
E L+ NS + + L K+ DLERL+ R+ + ++C +LP
Sbjct: 337 EALINNSAALYDIKTDLAKVYDLERLMTRIIYKAANAKDVKALGATCRILP 387
>gi|307192503|gb|EFN75691.1| DNA mismatch repair protein Msh2 [Harpegnathos saltator]
Length = 857
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/336 (34%), Positives = 182/336 (54%), Gaps = 28/336 (8%)
Query: 738 ASQWSEVIHAI----SCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
A+ +SE + AI +C+DVL +FA A ++ RP ++P + L +
Sbjct: 518 AAGYSETVRAIGSVLACLDVLTAFASAAVSANKVYVRPDMVPSEEGE----------LNL 567
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ HP + G + ND+ D C R ++TGPNMGGKST +R+ + ++A
Sbjct: 568 VQIRHPCLEMQQGIDYIANDVNFKRDQ--CHFR--IITGPNMGGKSTYIRSVGVTALMAH 623
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G FVPC+ +SL D I R+GA D + G STF++E ETA++L+ AT +SLVI+DEL
Sbjct: 624 IGSFVPCDKATISLLDCILARVGADDSQLKGLSTFMMEMIETAAILKTATCNSLVIIDEL 683
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST++G IA+++ L + I LFATH+H +TK V +H+ ++N
Sbjct: 684 GRGTSTYEGCGIAWSIAEHLAKDIKSYCLFATHFHEITKLAEEISTVKNEHVTALVENN- 742
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
+L LY++ SG C +S+GL VA MA PQ V+E A ++ G F+
Sbjct: 743 --------KLTLLYKVKSGICDQSFGLHVAKMANFPQDVIEFAKRKQAELEDYEGVVFEG 794
Query: 1034 SEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDT 1069
S+ + + +E +T+++ C+S D DT
Sbjct: 795 SDNPQKKRKIIQEA-ETLISQFLTKCDSLDQSLSDT 829
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 38/271 (14%)
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V ++A+K G G S V G + VD + + V D+ S + L +L++ ++PKE +
Sbjct: 76 VSVIAVKLGTEGK---SRVVGLSCVDVVSTLISVAEFQDNESFSNLESLVVTLAPKECLL 132
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
E Q + + + L ++F S ++ L L + G
Sbjct: 133 IQGEGSYEFQNLKQMMERSNVLVTLRKK---SEFSSDSVIEDLNTLIKFKKGQKQNAQSL 189
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL-------- 562
E + +I SA LI +L L D+ N L LR+D +
Sbjct: 190 PE--VNLNIAMSATSALIKYLD-LTSDEGHMNQFALKQVEQSRYLRLDSAAIKALNIEPR 246
Query: 563 -----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
LD C T+ G RL+ W+ PL+D+ I R D+VE L+KN+E
Sbjct: 247 VDSASNLHGNPVASILTLLDKCRTAQGHRLIAQWVRQPLRDLSLIKERHDIVELLVKNNE 306
Query: 606 VVMVVAQ-YLRKLPDLERL---LGRVKARVQ 632
+ + + YLR++PDL++L L R K+ +Q
Sbjct: 307 LRSALCEDYLRRIPDLQQLAKKLARKKSALQ 337
>gi|355750038|gb|EHH54376.1| hypothetical protein EGM_15199, partial [Macaca fascicularis]
Length = 1121
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/331 (35%), Positives = 177/331 (53%), Gaps = 22/331 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 785 VLDCSAEWLDFL-EKFSEHYHYLCKAVHHLATVDCIFSLAKVAK--QGNYCRPTV--QEE 839
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L EDS+ R +++TGPNMGGK
Sbjct: 840 RKIIIKNGRHPVIDV-------LLGEQDQY-VPNSTDLSEDSE----RVMIITGPNMGGK 887
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 888 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 947
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 948 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1007
Query: 959 H-VTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H V HM + G+++ + FLY++T G SYGL VA +A +P +++
Sbjct: 1008 HQVGNYHMGFLVSEDESKLDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADIPGEIL 1067
Query: 1014 EAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
+ A+H + ++ I K + ++ ++H
Sbjct: 1068 KKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1098
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 186/442 (42%), Gaps = 74/442 (16%)
Query: 230 TTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
+ + E L + + AN+R +++Y P E QY +K Q+ D +L
Sbjct: 192 SNTSHENLQKTASKPANKR--------SKSIYTPLEL---------QYIEMKQQHKDAVL 234
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
+ G Y + DAEI +EL+ L I + V +LVA+GYKVG
Sbjct: 235 CVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGV 292
Query: 350 IEQLETSE-QAKARHTNSVISRKLVNVVTPSTTV---------DGTIGPDAV-------H 392
++Q ET+ +A + +S+ SRKL + T ST + D + D + +
Sbjct: 293 VKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDILFGQLDDAVNVDEIMTDTSTSY 352
Query: 393 LLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
LL I KE G V G V A V + D AS + L + + P E++
Sbjct: 353 LLCISENKENVRDKKKGIVFIGIVGVQPATGEVVFDSFQDSASRSELETRMSNLQPVELL 412
Query: 450 YENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKKL 493
+ L ++ + + + ++ S E + A AVT+F D ++K
Sbjct: 413 LPS-ALSEQTEMLIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGS 471
Query: 494 VQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRN 542
++G N + + K LE ++ F L + ++ + LRN
Sbjct: 472 QIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRN 529
Query: 543 GDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYL 600
+IL + ++ G L+ LD TS G+R L+ W+ PL + IN RLD V E L
Sbjct: 530 LEILQNQT---DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVL 586
Query: 601 MKNSEVVMVVAQYLRKLPDLER 622
S V + +LRKLPD+ER
Sbjct: 587 HSESSVFGQIENHLRKLPDIER 608
>gi|90962103|ref|YP_536019.1| DNA mismatch repair protein MutS [Lactobacillus salivarius UCC118]
gi|122448803|sp|Q1WT15.1|MUTS_LACS1 RecName: Full=DNA mismatch repair protein MutS
gi|90821297|gb|ABD99936.1| DNA mismatch repair protein [Lactobacillus salivarius UCC118]
Length = 876
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 28/305 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E+ A++ +DVL+SFA + P + DN L IK WHP
Sbjct: 537 ELAGAVAALDVLQSFATVSEQGHFV-----------KPELTTDNHS--LDIKDGWHPVVE 583
Query: 803 GENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
G +PNDI + +D D LL+TGPNM GKST +R L V++AQ+GCFVP +
Sbjct: 584 KVMGKQSYIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVIAQIGCFVPAK 638
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+ + D IFTR+GA D +++GESTF+VE ET L AT++SL++ DE+GRGT+T+D
Sbjct: 639 SAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFDEIGRGTATYD 698
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + I+ + LF+THYH LT S + H+ K+
Sbjct: 699 GMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKNG--------- 749
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
EL+FL+++ G +SYG+ VA +AG+P K+++ A ++ + S+E +E
Sbjct: 750 ELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVDSTESYAEEK 809
Query: 1042 SLHEE 1046
+ E+
Sbjct: 810 HIEEK 814
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 170/370 (45%), Gaps = 40/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T V
Sbjct: 6 KQTPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E +QAK ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVDKGYKVAICEQVEDPKQAKG-----MVKREVIQLVTPGTIIDES 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + +L A+ N YGFA+VD + + V +N + + L+ +
Sbjct: 121 AGEAKENNYLTALHFENDQ-------YGFAYVDLSTGELKVSVLN---TIDTILNELISL 170
Query: 444 SPKEVIYE---NRGLCKEAQKALRKFSAGSAALELTP--AMAVTDFLDASEVKKLVQLNG 498
KE++ + N + + K L+ + E + + A D ++ EV+ + L
Sbjct: 171 RTKEIVVDSSVNDDVLNQI-KNLKILISEQNDTEDSSEVSFASQDVENSVEVEVIKHLIT 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ + ++ S + H R + ++LRN +
Sbjct: 230 YLKITQKRALSHLQRAVHYEP--SQYLKMDYHAKRNL--ELLRN---------LRTQKKS 276
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+ LDS T+ G RLL+ WI PL +++ I R +VE L+ + + + L +
Sbjct: 277 GTLLWLLDSTKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNV 336
Query: 618 PDLERLLGRV 627
DLERL G+V
Sbjct: 337 YDLERLAGKV 346
>gi|301301372|ref|ZP_07207514.1| DNA mismatch repair protein MutS [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851032|gb|EFK78774.1| DNA mismatch repair protein MutS [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 876
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 28/305 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E+ A++ +DVL+SFA + P + DN L IK WHP
Sbjct: 537 ELAGAVAALDVLQSFATVSEQGHFV-----------KPELTTDNHS--LDIKDGWHPVVE 583
Query: 803 GENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
G +PNDI + +D D LL+TGPNM GKST +R L V++AQ+GCFVP +
Sbjct: 584 KVMGKQSYIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVIAQIGCFVPAK 638
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+ + D IFTR+GA D +++GESTF+VE ET L AT++SL++ DE+GRGT+T+D
Sbjct: 639 SAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFDEIGRGTATYD 698
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + I+ + LF+THYH LT S + H+ K+
Sbjct: 699 GMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKNG--------- 749
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
EL+FL+++ G +SYG+ VA +AG+P K+++ A ++ + S+E +E
Sbjct: 750 ELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVDSTESYAEEK 809
Query: 1042 SLHEE 1046
+ E+
Sbjct: 810 HIEEK 814
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 170/370 (45%), Gaps = 40/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T V
Sbjct: 6 KQTPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E +QAK ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVDKGYKVAICEQVEDPKQAKG-----MVKREVIQLVTPGTIIDES 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + +L A+ N YGFA+VD + + V +N + + L+ +
Sbjct: 121 AGEAKENNYLTALHFENDQ-------YGFAYVDLSTGELKVSVLN---TIDTILNELISL 170
Query: 444 SPKEVIYE---NRGLCKEAQKALRKFSAGSAALELTP--AMAVTDFLDASEVKKLVQLNG 498
KE++ + N + + K L+ + E + + A D ++ EV+ + L
Sbjct: 171 RTKEIVVDSSVNDDVLNQI-KNLKILISEQNDTEDSSEVSFASQDVENSVEVEVIKHLIT 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ + ++ S + H R + ++LRN +
Sbjct: 230 YLKITQKRALSHLQRAVHYEP--SQYLKMDYHAKRNL--ELLRN---------LRTQKKS 276
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+ LDS T+ G RLL+ WI PL +++ I R +VE L+ + + + L +
Sbjct: 277 GTLLWLLDSTKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNV 336
Query: 618 PDLERLLGRV 627
DLERL G+V
Sbjct: 337 YDLERLAGKV 346
>gi|302915423|ref|XP_003051522.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732461|gb|EEU45809.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 926
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 163/297 (54%), Gaps = 12/297 (4%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ ++ AS + V+ ++ VL V S+ A+H L P +
Sbjct: 564 TQSSLVHEVVQVASSYCPVLERLA--GVLAHLDVIVSLGHAAVH---ALESYVRPKIHAR 618
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + +K HP ++ + NDI L D L ++TGPNMGGKST +R T
Sbjct: 619 GEGQTI-LKEARHPCMELQDDVQFITNDIELTRDKSSFL----IITGPNMGGKSTYIRQT 673
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT D
Sbjct: 674 GVIALMAQVGCFVPCSEAELTIYDSILARVGASDSQLKGVSTFMAEMLETANILKSATAD 733
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT +P V H+
Sbjct: 734 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTALADQYPQVQNLHV 793
Query: 966 ACAFKSNSENYSKGD--QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
S+ D +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 794 TAHIGGTGGAVSEADAKREVTLLYKVAPGVCDQSFGIHVAELVRFPDKVVRMAKRKA 850
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL + I R +VE ++E+ + ++LR +PDL R
Sbjct: 319 LNHCKTPVGSRLLAQWLKQPLMSKQEIEKRQQLVEAFYVDTELRQTLQEEHLRSIPDLYR 378
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGHIIPS 680
L R + GK L+ V+ + +++ G + +M E + P
Sbjct: 379 LSKRFQR-------------GKANLEDVVRAYQVVIRLPGFIGTFEGVM---DENYKDP- 421
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
L + + D SD L K E +D D D +
Sbjct: 422 LDEAYTTKLRDLSDSLGKLQDMVEQTVDLDALDRHEY 458
>gi|417810019|ref|ZP_12456700.1| DNA mismatch repair protein MutS [Lactobacillus salivarius GJ-24]
gi|335350943|gb|EGM52439.1| DNA mismatch repair protein MutS [Lactobacillus salivarius GJ-24]
Length = 876
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 28/305 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E+ A++ +DVL+SFA + P + DN L IK WHP
Sbjct: 537 ELAGAVAALDVLQSFATVSEQGHFV-----------KPELTTDNHS--LDIKDGWHPVVE 583
Query: 803 GENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
G +PNDI + +D D LL+TGPNM GKST +R L V++AQ+GCFVP +
Sbjct: 584 KVMGKQSYIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVIAQIGCFVPAK 638
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+ + D IFTR+GA D +++GESTF+VE ET L AT++SL++ DE+GRGT+T+D
Sbjct: 639 SAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFDEIGRGTATYD 698
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + I+ + LF+THYH LT S + H+ K+
Sbjct: 699 GMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKNG--------- 749
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
EL+FL+++ G +SYG+ VA +AG+P K+++ A ++ + S+E +E
Sbjct: 750 ELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVDSTESYTEEK 809
Query: 1042 SLHEE 1046
+ E+
Sbjct: 810 HIEEK 814
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/370 (25%), Positives = 170/370 (45%), Gaps = 40/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T V
Sbjct: 6 KQTPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E +QAK ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVDKGYKVAICEQVEDPKQAKG-----MVKREVIQLVTPGTIIDES 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + +L A+ N YGFA+VD + + V ++ + + L+ +
Sbjct: 121 AGEAKENNYLTALHFENNQ-------YGFAYVDLSTGELKVSVLD---TIDTILNELISL 170
Query: 444 SPKEVIYE---NRGLCKEAQKALRKFSAGSAALELTP--AMAVTDFLDASEVKKLVQLNG 498
KE++ + N + + K L+ + E + + A D ++ EV+ + L
Sbjct: 171 RTKEIVVDSSVNDDVLNQI-KNLKILISEQNDTEDSSEVSFASQDVENSVEVEVIKHLIT 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ + ++ S + H R + ++LRN +
Sbjct: 230 YLKITQKRALSHLQRAVHYEP--SQYLKMDYHAKRNL--ELLRN---------LRTQKKS 276
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+ LDS T+ G RLL+ WI PL +++ I R +VE L+ + + + L +
Sbjct: 277 GTLLWLLDSTKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNV 336
Query: 618 PDLERLLGRV 627
DLERL G+V
Sbjct: 337 YDLERLAGKV 346
>gi|451998559|gb|EMD91023.1| hypothetical protein COCHEDRAFT_1176734 [Cochliobolus heterostrophus
C5]
Length = 1096
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 162/298 (54%), Gaps = 23/298 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E K Q + I +++ +D L S A A+ P P D
Sbjct: 788 LLEEISSKYQQLRDCIASLATLDALLSLATLANQ-----------PGYVKPTFTDDIQ-- 834
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ I G HP VPND+ L DS R LL+TGPNMGGKS+ +R+ L
Sbjct: 835 -INITGGRHPMVEQLLLDSYVPNDLSLSHDS----TRALLVTGPNMGGKSSFVRSAALIA 889
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+ Q+G +VP L + D +FTR+GA D ++ GESTF+VE ET+ +L+ AT SLVI
Sbjct: 890 IMGQIGSYVPASEAHLGMLDAVFTRMGAFDNMLKGESTFMVELNETSDILKSATPRSLVI 949
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTSTFDG AIA AV ++ + LF THY L K + P+ L+++ F
Sbjct: 950 LDELGRGTSTFDGVAIAEAVLDYVIRDLQSLTLFITHYQHLAKVPSRFPNGQLKNVHMRF 1009
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ + G +E+VFLY T G SYGL VA +A VP+KV++ A + +++S+
Sbjct: 1010 EEQN-----GGREVVFLYEATEGMSHRSYGLNVARLARVPEKVIDVAQVKSTELEQSM 1062
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 98/429 (22%), Positives = 166/429 (38%), Gaps = 82/429 (19%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + QY ++K +++D ++ +VG Y+ + DA I KEL D +
Sbjct: 188 KLTPMEIQYLDIKRKHLDTIIVMEVGYKYKFFGEDARIASKELGIVCIPGKFRYDEHPSE 247
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + K + V++LV +KVG + Q+ET+ +A + N+ RKL N+
Sbjct: 248 AHLDKFASASFPTHRLQVHVKRLVQANHKVGVVRQVETAALKAAGNNRNAPFVRKLTNLY 307
Query: 377 TPSTTVD------------GTIGPDAVHLLAIKEGNC---GPDNGSVVYGFAFVDCAALR 421
T T VD GT +LL I E + G D V G V A
Sbjct: 308 TKGTYVDDVEGLETPTEGSGTSTQSTGYLLCITESHAKGWGTDE-KVQVGLVAVQPATGD 366
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAV 481
+ D + + LL+ ++P E + L K K + SA +
Sbjct: 367 IIYDDFEDGFMRSEIETLLLHIAPAEFLVVG-DLSKATNKLIEHLSASKTNV-------- 417
Query: 482 TDFLDASEVKKLVQ-----------LNGYFNGS--------SSPWSKALENVMQHDIGFS 522
F D S V+++ + ++ ++ G S L+ V Q +
Sbjct: 418 --FGDRSRVERVEKPKTMAAQAYSHISNFYAGKMKSSTDADSEKQGAVLDKVHQLSEHVT 475
Query: 523 A-LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------------------- 562
L +I++LS L+ V R + ++G TL
Sbjct: 476 MCLSAMITYLSEYGLEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDFTSKGSLF 535
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP- 618
++ T G+RLLR W+ PL D + R+ VE L + + V + L K+
Sbjct: 536 WTMNRTKTRFGQRLLRKWVGRPLIDKAKLEERIAAVEELKEGEHTIPVDKLKFVLGKIKT 595
Query: 619 DLERLLGRV 627
DLE++L R+
Sbjct: 596 DLEKVLIRI 604
>gi|114599390|ref|XP_526872.2| PREDICTED: DNA mismatch repair protein Msh3, partial [Pan
troglodytes]
Length = 653
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 316 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 370
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 371 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 418
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 419 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 478
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 479 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 538
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 539 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 598
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 599 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 630
>gi|259502855|ref|ZP_05745757.1| DNA mismatch repair protein HexA [Lactobacillus antri DSM 16041]
gi|259169222|gb|EEW53717.1| DNA mismatch repair protein HexA [Lactobacillus antri DSM 16041]
Length = 873
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 175/315 (55%), Gaps = 38/315 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQ-------WSEVIHAISCIDVLRSFAVTAS 762
P+ + + L A+ S+ +E LF++ Q ++ A+S +DVL+SFAV +
Sbjct: 487 PELKEKEALILGAQEKSVALEYDLFVKIREQVKGQIQRLQKLAQALSELDVLQSFAVVSE 546
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
RP++ N G L+IK HP G VPND+ +G+D+D
Sbjct: 547 --DYHFVRPVM------------NSGHQLQIKDGRHPVVEKFMGHQEYVPNDVQMGDDTD 592
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP L + D IFTR+GA D +
Sbjct: 593 -----ILLITGPNMSGKSTYMRQLALTAVMAQMGCFVPASRAELPIFDQIFTRIGAADDL 647
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++GESTF+VE E + L AT SL++ DE+GRGT+T+DG A+A A+ + + + +
Sbjct: 648 ISGESTFMVEMMEANNALSHATDRSLILFDEIGRGTATYDGMALAQAIIEYVHQHVRAKT 707
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT + P + H+ K+ ELVFL+++++G +SYG+
Sbjct: 708 LFSTHYHELTSLEETLPRLKNVHVGATEKNG---------ELVFLHKVSAGPADKSYGIH 758
Query: 1002 VAVMAGVPQKVVEAA 1016
VA +AG+P +++ A
Sbjct: 759 VAKLAGMPAPLLKRA 773
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 161/365 (44%), Gaps = 42/365 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY VK QY D LF+++G FYEL+ DA G + L+ +T S G+
Sbjct: 3 EQYQKVKDQYPDAFLFYRLGDFYELFNEDAVKGAQLLELTLTTRNHSAKNPIPMCGVPHR 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ V+ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D G
Sbjct: 63 AVESYVDVLIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDLNGDQARQ 117
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+L AI P +G + A+ D + + ++ A+ + L+ + KEV+
Sbjct: 118 NNYLAAI-----SPASGH--FDLAYTDLSTGELKTTSL---ANVDGVVNELINLQSKEVV 167
Query: 450 YENRGLCKEAQKALRK----FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E L + AL S S L + +T L A+ + +V L + ++
Sbjct: 168 GEG-DLPDRLKAALDSRHILLSQQSEILNRSEISYLTQDLTAAGQRHVVGLLVSYLLTTQ 226
Query: 506 PWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDV--LRNGDILPYKVYRDCLRMDGQTL 562
S A MQ + + + I H S+ L+ + LR+G R +
Sbjct: 227 KRSLAH---MQRAVAYQPSAFMKIDHYSKTNLELMTNLRSGK-----------RQGTLSW 272
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
LD T+ G RLL+ W+ PL D I R D V L+ + + + L K+ DLER
Sbjct: 273 LLDETKTAMGSRLLKRWLDRPLIDPAAIKERQDKVAELLDHYFERSNLQEELIKVYDLER 332
Query: 623 LLGRV 627
L GRV
Sbjct: 333 LAGRV 337
>gi|427407122|ref|ZP_18897327.1| DNA mismatch repair protein MutS [Selenomonas sp. F0473]
gi|425707597|gb|EKU70641.1| DNA mismatch repair protein MutS [Selenomonas sp. F0473]
Length = 870
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 223/432 (51%), Gaps = 43/432 (9%)
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKK 645
D++G+ R V E + + ++ Y +L +L R K+ +Q G K
Sbjct: 402 DLQGLLMRAIVDEPGLSVRDGDIIRRGYNAELDELHRFSHDSKSLLQEMEERERERTGIK 461
Query: 646 VLKQQV-KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFE 704
LK KVFG ++ + H +P+ I K + + + + L +FE
Sbjct: 462 TLKIGYNKVFGYYIE----------VRHSGSDRVPA-DYIRKQTLANAERFITEELKEFE 510
Query: 705 AAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMS 764
I +T L+ + L + E+ V I+ +DVL+S A A+
Sbjct: 511 TKILG-----AQEKITALEYHLFTELRDRVKERLVPIQAVARTIARVDVLQSMAEAAA-- 563
Query: 765 SGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCL 824
S RP+I P S V +D P+++ LG + + VPND L +
Sbjct: 564 SYRYVRPVIRPASDGEIVIKDGRHPLVE-------RLLGRD--IFVPNDTHLSHGGTE-- 612
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
T+L+TGPNM GKST +R L ++AQ+G FVP ++ D IFTR+GA+D +++G
Sbjct: 613 --TMLITGPNMAGKSTYMRQVALLTLMAQVGSFVPARSAEIAPVDRIFTRIGASDDLVSG 670
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
+STF+VE E A +L++AT+DSLVILDE+GRGTSTFDG +IA AV + RI+ + LFA
Sbjct: 671 QSTFMVEMNEVAQILREATRDSLVILDEIGRGTSTFDGMSIARAVVEHIDARIHAKTLFA 730
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT E A+ +++ A + KG + +VFL R+ +GA +SYG+ VA
Sbjct: 731 THYHELT-EMANE---RIRNYCIAVR------EKG-RRVVFLRRIVAGAADKSYGIHVAR 779
Query: 1005 MAGVPQKVVEAA 1016
+AG+P KV E A
Sbjct: 780 LAGLPPKVTERA 791
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 163/370 (44%), Gaps = 26/370 (7%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSG-VGKCRQ 325
+ ++ +QY K + LLFF++G FYE++ DA+I KEL +T SG + K
Sbjct: 4 QNITPMMQQYLAAKEAHPGELLFFRLGDFYEMFFDDAKIAAKELGLTLTSRSGDLDKNPM 63
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ D + +LVA+G+KV EQ+ + + R++V VVTP T +
Sbjct: 64 CGVPYHAADSYIARLVAKGFKVAIAEQIGDPK------AKGLTPREVVKVVTPGTALSDE 117
Query: 386 IGPDA--VHLLAIKE---GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
+ DA V++ + E G C + G F + + A+ L L
Sbjct: 118 VLKDASNVYIALLHETAPGCCALAGADISTGECF--------YAAYAGESAAQQILDELY 169
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV-KKLVQLNGY 499
+++ + + E + + + +R+ A+ + A A + L A + + +
Sbjct: 170 RRMTAELLFTEGLSIADDVRAFVRQ-RLPHCAISIVSADAGAEALLARHFPPEEIPADAG 228
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD-VLRNGDILPYKVYRDCLRMD 558
+ + + L + + D+ + + + LD LRN +I + RD + +
Sbjct: 229 ARTAVAALLRYLHDTVMADLSQINRLAFLDAAASMQLDTYTLRNLEIT--RSLRDGGKKN 286
Query: 559 GQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
LD T G RLL+SW+ HPL I+ RLD V L S + + ++LR +
Sbjct: 287 TLFDVLDFTRTPMGTRLLKSWLEHPLLAPHRIDARLDAVAELADASSLRGALREHLRSVY 346
Query: 619 DLERLLGRVK 628
D ERLL R++
Sbjct: 347 DFERLLTRIE 356
>gi|397503403|ref|XP_003822314.1| PREDICTED: DNA mismatch repair protein Msh3 [Pan paniscus]
Length = 1131
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 180/335 (53%), Gaps = 29/335 (8%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 794 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 848
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 849 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 896
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 897 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 956
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 957 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1016
Query: 959 H-VTLQHMACAFKSNSENYSKGDQE--------LVFLYRLTSGACPESYGLQVAVMAGVP 1009
H V HM SE+ SK D + + FLY++T G SYGL VA +A VP
Sbjct: 1017 HQVGNYHMGFLV---SEDESKLDPDAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVP 1073
Query: 1010 QKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++++ A+H + ++ I K + ++ ++H
Sbjct: 1074 GEILKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1108
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 113/417 (27%), Positives = 179/417 (42%), Gaps = 67/417 (16%)
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL+ L
Sbjct: 220 KSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHL 270
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
I + V +LVA+GYKVG ++Q ET+ +A + +S+ SRKL +
Sbjct: 271 DH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALY 328
Query: 377 TPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVYGFAFVD 416
T ST + + P DAV +LL I KE G++ G V
Sbjct: 329 TKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQ 388
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA---- 472
A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 389 PATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVSVQDDRI 447
Query: 473 ---------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSSPWSKA- 510
E + A AVT+F D ++K ++G N + + K
Sbjct: 448 RVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEF 507
Query: 511 -LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCV 568
LE ++ F L + ++ + LRN +IL + ++ G L+ LD
Sbjct: 508 NLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLWVLDHTK 562
Query: 569 TSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLERLL 624
TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+ER L
Sbjct: 563 TSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGL 619
>gi|347525864|ref|YP_004832612.1| DNA mismatch repair protein MutS [Lactobacillus ruminis ATCC 27782]
gi|345284823|gb|AEN78676.1| DNA mismatch repair protein MutS [Lactobacillus ruminis ATCC 27782]
Length = 875
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 177/317 (55%), Gaps = 41/317 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE-------KASQWSEVIHAISCIDVLRSFAVTAS 762
P+ + + L AE+ + +E LF+E + + ++ AI+ +D L+SFA +
Sbjct: 497 PELKEKEALILGAESKTFELEYRLFVEVREKVKKQIERLQKLAAAIAELDCLQSFASVSE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGED 819
+ P ++ S + L+IK WHP LG+ VPND+ + E
Sbjct: 557 DNHFVC--PTLVSDSHD-----------LEIKAGWHPVVERVLGKQSY--VPNDVSMPEG 601
Query: 820 SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD 879
D LL+TGPNM GKST +R L VI+AQ+GCFVP + + + D IFTR+GA D
Sbjct: 602 RD-----ILLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKEAKMPIFDQIFTRIGAAD 656
Query: 880 RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939
+++GESTF+VE ET LQ A+++SL++ DE+GRGT+T+DG A+A A+ + + +
Sbjct: 657 DLISGESTFMVEMKETNEALQNASKNSLLLFDEIGRGTATYDGMALAQAIIEYVHDNVQA 716
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LF+THYH LT H+ H+ K+ ELVFL+++ G SYG
Sbjct: 717 KTLFSTHYHELTVLDEELEHLENIHVGAVEKNG---------ELVFLHKMKKGPADRSYG 767
Query: 1000 LQVAVMAGVPQKVVEAA 1016
+ VA +AG+P+K++E A
Sbjct: 768 IHVAKLAGMPEKLLERA 784
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 42/365 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
KQY +K QY D LF+++G FYE++ DA G + L+ +T + G+
Sbjct: 12 KQYLEIKEQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTTRNKKSKNPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP--D 389
+ + ++ L+ +GYKV EQ+E + AK ++ R+++ +VTP T +D G +
Sbjct: 72 AVQNYIDILIDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTNIDMRTGEAGE 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+L A+ E + YGFA+ D + + + DD S L ++ + KE++
Sbjct: 127 NNYLTALHEQDGK-------YGFAYADLSTGELRCSILEDDDS---LLNEMISLKTKEIV 176
Query: 450 YENRGLCK--EAQKALRKFSAGSAALELTPA----MAVTDFLDASEVKKLVQLNGYFNGS 503
+ K E K LR + ++E PA AV D E + L L Y +
Sbjct: 177 IDESVSEKTVEKIKKLRVLVSSQESVE--PASELSYAVQDVESDLEKEVLNHLLTYVKKT 234
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
L+ + ++ + + + +L + R G + G L+
Sbjct: 235 QKRTLAHLQKAVHYEPAYFLKLDRYAKQNLELLQNA-RTG------------KKSGTLLW 281
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
LD T+ G RLL+ WI PL + I R +V +++ + L+++ D+ER
Sbjct: 282 LLDETKTAMGARLLKQWISRPLINPAQIKERQLIVNDQLEHYFERSSLQDELKQVYDIER 341
Query: 623 LLGRV 627
L GR+
Sbjct: 342 LAGRI 346
>gi|385799933|ref|YP_005836337.1| DNA mismatch repair protein MutS [Halanaerobium praevalens DSM 2228]
gi|309389297|gb|ADO77177.1| DNA mismatch repair protein MutS [Halanaerobium praevalens DSM 2228]
Length = 868
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 167/294 (56%), Gaps = 36/294 (12%)
Query: 732 ELFIE---KASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
+LFIE K +Q E I+ I+ +DVL +F+ A I P V
Sbjct: 529 KLFIEIREKIAQEVERINQTAAVIAQLDVLLAFSYLA-----------IENNYTKPEV-- 575
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
N GP +KIK HP VPND L D R +++TGPNM GKST +R
Sbjct: 576 -NNGPAIKIKNGRHPVVEKMFTEQFVPNDCYL----DQTEQRFVIITGPNMSGKSTYMRQ 630
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L V++AQ+G +VP E ++ L D IFTR+GA+D + TG+STF+VE E A+++ +T+
Sbjct: 631 VALIVLMAQVGSYVPAEEALIGLTDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNNSTE 690
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTL 962
SL+ILDE+GRGTST+DG +IA++V L ERI R LFATHYH LT+ +P +
Sbjct: 691 KSLIILDEVGRGTSTYDGVSIAWSVSEYLNNPERIGARTLFATHYHELTRLEDEYPGIKN 750
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ N + FL+R+ G +SYG++VA +AG+P++++ +A
Sbjct: 751 YNVLVEEDKNG---------VHFLHRIIEGRADDSYGIEVARLAGLPEEIIISA 795
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 183/430 (42%), Gaps = 47/430 (10%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ K++ KQY ++K++Y D +LFF++G FYE++ DA+ K LD +T G K
Sbjct: 1 MAKLTPMMKQYHDLKNKYQDSILFFRLGDFYEMFGQDAKKAAKILDIALTARNKGGGEKI 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ +EKL+ G KV EQLE ++ ++ R ++ VVTP T ++
Sbjct: 61 PMAGVPYHSAASYIEKLIKNGIKVAICEQLEDPSA-----SSGIVKRDVIRVVTPGTVIE 115
Query: 384 GTI---GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
I + A K GN YGF++ D + ++ T + L +
Sbjct: 116 NEILAENENNYLAAAFKYGNY--------YGFSYTDISTGEFYL-TEFPASETDKLKDEI 166
Query: 441 MQVSPKEVIYENR----GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL 496
++SP+E++ + + L KE Q + F+ + + LD ++K L
Sbjct: 167 NRISPREILLDQKIAQTKLIKELQN-IYNFTLNILENKKYDRL-YQGILDHFQLK---SL 221
Query: 497 NGYFNGSSSPWSKALENVMQH--DIGFSALGGLI----SHLSRLMLDDVLRNGDILPYKV 550
G+ A V+ + D + + HL M+ D ++
Sbjct: 222 EGFGCEEMKAAVYAAGQVLAYLGDTQKRTINQITLLKAYHLEDYMVLDSASRRNLELTAT 281
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
RD R +D VTS G R ++ WI PL + I R +E ++ N +V+ +
Sbjct: 282 IRDNQRSGSLLSIIDQTVTSMGGREIKKWINQPLIQKKAIEQRHTALEEIIDNYQVLDKL 341
Query: 611 AQYLRKLPDLERLLGRVKARVQASSCIV--------LPLIGKKVLKQQVKVFGSLVKGLR 662
L ++ DLER++ ++ + + +V LP + L Q +K L+ ++
Sbjct: 342 RAELNEIYDLERIMSKITYQSANARDLVALKNSLAKLPAVEN--LMQNLK--SDLIIEMQ 397
Query: 663 IAMDLLMLMH 672
DLL MH
Sbjct: 398 TKFDLLEDMH 407
>gi|420155624|ref|ZP_14662482.1| DNA mismatch repair protein MutS [Clostridium sp. MSTE9]
gi|394758853|gb|EJF41689.1| DNA mismatch repair protein MutS [Clostridium sp. MSTE9]
Length = 871
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 177/325 (54%), Gaps = 51/325 (15%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF----IEKASQWSEV---IHAISCIDVLRSFAVTAS 762
PD + + L A S+ +E LF E ASQ V A++ +DVL SFA +
Sbjct: 512 PDLKQLEGRILGAHEKSVQLETQLFEQVRAEAASQLERVQATASAVAQLDVLTSFAAVSV 571
Query: 763 MSSGAMHRP-------LILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDIL 815
+S RP +IL +S++P V Q G PF VPND+
Sbjct: 572 ANS--YQRPEVNLSGKIILKESRHPVVEQMLDGA---------PF---------VPNDVE 611
Query: 816 LGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRL 875
L ++ + R ++TGPNM GKST +R L V++AQ+GCFVP + + + D IFTR+
Sbjct: 612 LDQEEN----RVAIITGPNMAGKSTYMRQIALIVLMAQIGCFVPAQSAEIGVVDAIFTRV 667
Query: 876 GATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE 935
GA+D + +G+STF+VE TE A +L+ AT SL+ILDE+GRGTSTFDG +IA AV + +
Sbjct: 668 GASDDMASGQSTFMVEMTEVADILKNATSRSLLILDEIGRGTSTFDGMSIARAVLEHVAD 727
Query: 936 R--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
+ + + LFATHYH LT L+ + K+ + K ++ FL R+ G
Sbjct: 728 KHSLGAKALFATHYHELT---------VLEELVSGVKNFNIAVKKRGDDITFLRRIVRGG 778
Query: 994 CPESYGLQVAVMAGVPQKVVEAASH 1018
+S+G++VA +AGVP VV A
Sbjct: 779 ADDSFGIEVAKLAGVPNSVVNRAKQ 803
Score = 96.7 bits (239), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 187/432 (43%), Gaps = 60/432 (13%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV--- 326
+S KQY+ +K Q D LLFF++G FYE++ DA++ +EL+ +T G+ +
Sbjct: 4 LSPMMKQYFEIKEQNPDTLLFFRLGDFYEMFFEDAKLASRELELTLTGRDCGQEERAPMC 63
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G+ + + +LVA+GYKV EQ+E AK ++ R ++ V+TP T ++ ++
Sbjct: 64 GVPFHSAESYIARLVAKGYKVAICEQMEDPALAKG-----LVKRAVIRVITPGTVMESSM 118
Query: 387 GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL---LMQV 443
++ + C G G F D + + + D+ + L +
Sbjct: 119 LDESKNNFI-----CSVFAGEHAAGVCFADISTGELRATELLADSLQELESQVRNELARF 173
Query: 444 SPKEVIYENRGLCKEAQKALRKF--SAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
SP+E++ + L L KF SAALE P T A ++ K
Sbjct: 174 SPREILINPQTL---QMTGLGKFIKEKLSAALECLPQEETT---GAEQLLK--------- 218
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY----------KVY 551
SP V + + A+G L+ +L + + R I Y
Sbjct: 219 AQFSPERLDSSGVSAYPLTAQAVGCLLLYLKKTQRTGLERMDTIEMYSGSQFMGLDLSAR 278
Query: 552 RDCLRMD--------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
R+ ++ G L+ LD T+ GKRL+R WI PL + I R + VE L
Sbjct: 279 RNLELLETMRGKSKRGSLLWVLDKTKTAMGKRLIRVWIERPLLNPAQILRRQNAVEELSM 338
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV-----KARVQASSCIVLPLIGKKVLKQQV-KVFGS 656
+S VA+ L + DLERL+ R+ AR S C L + + LKQ + V +
Sbjct: 339 DSMFRDAVAEQLSGIHDLERLMTRIVYGSANARELRSLCAALSRLPE--LKQLLGGVSSA 396
Query: 657 LVKGLRIAMDLL 668
L++ +R +D L
Sbjct: 397 LLREIREKIDPL 408
>gi|332019050|gb|EGI59582.1| DNA mismatch repair protein Msh2 [Acromyrmex echinatior]
Length = 857
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 185/351 (52%), Gaps = 32/351 (9%)
Query: 689 IFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAI 748
I D + +F ++ DF D +N + +++E+ +E A+ +SE + +I
Sbjct: 474 ILDSNKAGVRFRNNKLNELNDDFLDARNKYL----ERQKDVIVEI-VEIAAGYSETVRSI 528
Query: 749 ----SCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE 804
+C+DVL +F+ A ++ RP ++P + L + + HP +
Sbjct: 529 GGVLACLDVLTAFSSAAVSANKVYVRPKMVPSEEGE----------LNLIQVRHPCLEMQ 578
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
G + NDI+ D C ++TGPNMGGKST +R+ + ++A +G FVPC+
Sbjct: 579 QGVDYIANDIIFKRDQ--C--HFYIITGPNMGGKSTYIRSVGVTALMAHIGSFVPCDEAT 634
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
+SL D I R+GA D + G STF++E ETA++L+ AT +SLVI+DELGRGTST++G
Sbjct: 635 ISLLDCILARVGADDSQLKGLSTFMMEMIETAAILKTATCNSLVIIDELGRGTSTYEGCG 694
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
IA+++ L I LFATH+H +TK P V QH+ + D +L
Sbjct: 695 IAWSIAEHLARNIKSYCLFATHFHEITKLAEEIPAVKNQHVTALVE---------DDKLT 745
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 1035
LY++ G C +S+GL VA MA P V+E A ++ G +F+ S+
Sbjct: 746 LLYKVMPGICDQSFGLHVAKMANFPSDVIEFAKRKQAELEDYQGVTFEGSD 796
Score = 63.2 bits (152), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 117/270 (43%), Gaps = 36/270 (13%)
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V ++A+K G + S V G + VD + + V D+ S + L +L++ ++PKE +
Sbjct: 76 VSVIAVK---LGIEGKSRVVGLSCVDVVSTLISVIEFQDNESFSNLESLIVTLAPKECLL 132
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
E Q + + + L +F+ S + L +L + G
Sbjct: 133 IQGEGSFEFQTLKQLMERSNVMVTLRKK---NEFVSDSIIDDLNKLIKFKKGQKQNAQSL 189
Query: 511 LENVMQHDIGFSALGGLIS---------HLSRLMLDDVLRNGDILPYKVYRDCLRMDGQT 561
E + ++ SA LI H+++ L+ + ++ I L ++ T
Sbjct: 190 PE--VNLNLAMSATSALIKYLDLTSDEGHMNQFKLNQIEQSRYIRLDSAAMKALNIEPHT 247
Query: 562 ---------------LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
LD C T+ G RL+ W+ PLKD+ I R D+VE L+KN+E+
Sbjct: 248 DTIPTLHGNSVASILTLLDKCRTAQGHRLIAQWVRQPLKDLSLIKERHDIVELLVKNNEL 307
Query: 607 VMVVA-QYLRKLPDLERL---LGRVKARVQ 632
++ YL+++PDL++L L R K +Q
Sbjct: 308 RSTLSDDYLKRIPDLQQLAKKLARKKLTLQ 337
>gi|116629083|ref|YP_814255.1| DNA mismatch repair protein MutS [Lactobacillus gasseri ATCC 33323]
gi|238853826|ref|ZP_04644191.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 202-4]
gi|282852792|ref|ZP_06262134.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 224-1]
gi|122273919|sp|Q045Q5.1|MUTS_LACGA RecName: Full=DNA mismatch repair protein MutS
gi|116094665|gb|ABJ59817.1| DNA mismatch repair protein MutS [Lactobacillus gasseri ATCC 33323]
gi|238833521|gb|EEQ25793.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 202-4]
gi|282556534|gb|EFB62154.1| DNA mismatch repair protein MutS [Lactobacillus gasseri 224-1]
Length = 857
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 52/349 (14%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHA-------ISCIDVLRSFAVTAS 762
PD + H+ L+AE S +E LF++ + I A ++ +DVL +FA +
Sbjct: 496 PDLKEHESLILEAEAKSTGLEYDLFVKLRENVKKYIPALQKLAKQVASLDVLTNFATVSE 555
Query: 763 MSSGAMHRP--------LILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI 814
++ RP + + ++P V Q V+ G +PND+
Sbjct: 556 QNNYV--RPDFTVDKQEINVVNGRHPVVEQ-----VM-------------TAGSYIPNDV 595
Query: 815 LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR 874
+ +D+D L+TGPNM GKST +R L I+AQ+GCFVP + L + D IFTR
Sbjct: 596 KMDQDTD-----IFLITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTR 650
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+GA D +++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+ + L
Sbjct: 651 IGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLH 710
Query: 935 ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGAC 994
+++ + LFATHYH LT TL+H+ +E K L+FL+++ G
Sbjct: 711 DKVGAKTLFATHYHELTD-----LDQTLKHLKNIHVGATEENGK----LIFLHKILPGPA 761
Query: 995 PESYGLQVAVMAGVPQKVV-EAASHAALAMKKSIGESFKSSEQRSEFSS 1042
+SYG+ VA +AG+P KV+ EA + K+ GE +SEQ F++
Sbjct: 762 DQSYGIHVAQLAGLPHKVLREATTMLKRLEKQGAGELQPASEQLDLFTA 810
Score = 106 bits (264), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 164/377 (43%), Gaps = 47/377 (12%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K + KQY+ +K QY D LF++VG FYEL+E DA G + L+ +T K +
Sbjct: 2 AKKDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRS-NKTKN 60
Query: 326 ----VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +D V LV +GYKV EQLE ++AK ++ R ++ ++TP T
Sbjct: 61 PIPMAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAKG-----MVKRGIIQLITPGTM 115
Query: 382 VDGT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ D+ +L ++ N G +G A+ D + + + D A
Sbjct: 116 MHERPDQAKDSNYLTSVISTNSG-------FGLAYSDLSTGETFSTHLTDFEGVA---NE 165
Query: 440 LMQVSPKEVIYE------NRGLCKEAQKALR---KFSAGSAALELTPAMAVTDFLDASEV 490
L+ + +EV+Y N+ K+A + K A + + + D +E+
Sbjct: 166 LLSLQTREVVYNGHLTEANKDFLKKANITVSEPVKVEGEHAEI----SYVTQNLTDDAEI 221
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
K QL Y S+ S A V Q L +SH + L+ + K
Sbjct: 222 KATKQLVAYL-LSTQKRSLAHLQVAQSYEPTQYLQ--MSHTVQTNLELI---------KS 269
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
+ +M LD T+ G RLL+SWI PL V I R ++V+ L+ + V
Sbjct: 270 AKTSKKMGSLFWLLDKTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKV 329
Query: 611 AQYLRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 330 IDSLKGVYDLERLTGRI 346
>gi|420147621|ref|ZP_14654896.1| DNA mismatch repair protein MutS [Lactobacillus gasseri CECT 5714]
gi|398400768|gb|EJN54299.1| DNA mismatch repair protein MutS [Lactobacillus gasseri CECT 5714]
Length = 857
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 186/345 (53%), Gaps = 44/345 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHA-------ISCIDVLRSFAVTAS 762
PD + H+ L+AE S +E LF++ + I A ++ +DVL +FA +
Sbjct: 496 PDLKEHESLILEAEAKSTGLEYDLFVKLRENVKKYIPALQKLAKQVASLDVLTNFATVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQD---NGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGE 818
+N VR D + + + G HP G +PND+ + +
Sbjct: 556 ---------------QNNYVRPDFKVDKQEINVVNG-RHPVVEQVMTAGSYIPNDVKMDQ 599
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
D+D L+TGPNM GKST +R L I+AQ+GCFVP + L + D IFTR+GA
Sbjct: 600 DTD-----IFLITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTRIGAA 654
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D +++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+ + L +++
Sbjct: 655 DDLISGQSTFMVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVG 714
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
+ LFATHYH LT TL+H+ +E K L+FL+++ G +SY
Sbjct: 715 AKTLFATHYHELTD-----LDQTLKHLKNIHVGATEENGK----LIFLHKILPGPADQSY 765
Query: 999 GLQVAVMAGVPQKVV-EAASHAALAMKKSIGESFKSSEQRSEFSS 1042
G+ VA +AG+P KV+ EA + K+ GE +SEQ F++
Sbjct: 766 GIHVAQLAGLPHKVLREATTMLKRLEKQGAGELQPASEQLDLFTA 810
Score = 106 bits (264), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 164/377 (43%), Gaps = 47/377 (12%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K + KQY+ +K QY D LF++VG FYEL+E DA G + L+ +T K +
Sbjct: 2 AKKDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRS-NKTKN 60
Query: 326 ----VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +D V LV +GYKV EQLE ++AK ++ R ++ ++TP T
Sbjct: 61 PIPMAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAKG-----MVKRGIIQLITPGTM 115
Query: 382 VDGT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ D+ +L ++ N G +G A+ D + + + D A
Sbjct: 116 MHERPDQAKDSNYLTSVISTNSG-------FGLAYSDLSTGETFSTHLTDFEGVA---NE 165
Query: 440 LMQVSPKEVIYE------NRGLCKEAQKALR---KFSAGSAALELTPAMAVTDFLDASEV 490
L+ + +EV+Y N+ K+A + K A + + + D +E+
Sbjct: 166 LLSLQTREVVYNGHLTEANKDFLKKANITVSEPVKVEGEHAEI----SYVTQNLTDDAEI 221
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
K QL Y S+ S A V Q L +SH + L+ + K
Sbjct: 222 KATKQLVAYL-LSTQKRSLAHLQVAQSYEPTQYLQ--MSHTVQTNLELI---------KS 269
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
+ +M LD T+ G RLL+SWI PL V I R ++V+ L+ + V
Sbjct: 270 AKTSKKMGSLFWLLDKTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKV 329
Query: 611 AQYLRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 330 IDSLKGVYDLERLTGRI 346
>gi|449496456|ref|XP_002195963.2| PREDICTED: DNA mismatch repair protein Msh2 [Taeniopygia guttata]
Length = 864
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 178/323 (55%), Gaps = 30/323 (9%)
Query: 730 LIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
+++ I AS ++E I I+ +D + SFA ++ + RP++L + + V
Sbjct: 508 IVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIV--- 564
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
+KG HP ++ +PNDI + ++TGPNMGGKST +R T
Sbjct: 565 -------LKGARHPCIEVQDEVAFIPNDITFEKGKQ----MFHIITGPNMGGKSTYIRQT 613
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ V++AQ+GCFVPCE +++ D I R+GA D + G STF+ E ETAS+L+ AT++
Sbjct: 614 GVIVLMAQIGCFVPCESAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTATEN 673
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V H+
Sbjct: 674 SLIIIDELGRGTSTYDGFGLAWAISEYIASKICGFAMFATHFHELTALADQVPTVNNLHV 733
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK- 1024
D L LYR+ G C +S+G+ VA +A P+ V+E+A AL ++
Sbjct: 734 TAL---------TSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALELEE 784
Query: 1025 -KSIGESFKSSEQRSEFSSLHEE 1046
++IG+S K SE L+ E
Sbjct: 785 FQNIGKS-KESEGEPPVKKLYRE 806
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 138/342 (40%), Gaps = 58/342 (16%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V G +VD ++ V D+ + L ALL+Q+ PKE + E K +
Sbjct: 87 DGQRVVGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQ 146
Query: 465 KFSAGSAAL------ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD 518
G + + T V D + KK QLN S AL M+
Sbjct: 147 VIQRGGILITDRKKADFTTKDIVQDLNRLLKQKKEEQLN----------SAALPE-MEKQ 195
Query: 519 IGFSALGGLISHLSRLMLDD-----------------VLRNGDILPYKVYRDCLRM--DG 559
+ S+L +I L L+ D+ VL N + +++ +
Sbjct: 196 VAVSSLSAVIKFLE-LLSDESNFGQFELTTFDLSQYMVLDNAAVQALNLFQSSVENANTA 254
Query: 560 QTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRK 616
Q+L L+ C T G+RL+ WI PL D I RL++VE + + E+ + + LR+
Sbjct: 255 QSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIEERLNLVEAFVMDPELRQCLQEDLLRR 314
Query: 617 LPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
PDL RL + + QA++ L + Q + ++V+ L H+ H
Sbjct: 315 FPDLNRLAKKFQR--QAAN-----LQDCYRMFQAINQLPNVVQALE--------KHEGAH 359
Query: 677 IIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+ L+ +F P+ D KFL E +D + +NH+
Sbjct: 360 QMLLLA-VFITPLNDICSDFSKFLEMIETTLDME--KVENHE 398
>gi|325268300|ref|ZP_08134933.1| DNA mismatch repair protein MutS [Prevotella multiformis DSM 16608]
gi|324989442|gb|EGC21392.1| DNA mismatch repair protein MutS [Prevotella multiformis DSM 16608]
Length = 887
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 179/332 (53%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D + L++ +LF+E E I + I+ +D
Sbjct: 510 LAQAERYITPELKEYE-EKILGADEKILAMEGQLFMELIQDMQEFIPQIQINANLIAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF + RP++ +G VL IK HP +GE
Sbjct: 569 CLLSFMKVSQQQRYV--RPVV------------DGSEVLDIKQGRHPVIETQLPIGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL + + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + +
Sbjct: 613 -YVPNDVLLDTEHQ----QIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARIGM 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R R LFATHYH L + S P + ++ + + + D +++F
Sbjct: 728 AIVEYLHEHPRAQARTLFATHYHELNEMEKSFPRI---------RNFNVSVKEVDGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 779 LRKLEPGGSEHSFGIHVAEIAGMPRSIVKRAN 810
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 169/387 (43%), Gaps = 49/387 (12%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL-SGVGKCRQV 326
K ++ KQ++++K+Q+ L+ F+ G FYE Y DA K L +T + G C +
Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESAKILGITLTRRNNGGNCDSI 65
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA--------RHTNSVISRKLVNV 375
G +D + KL+ G +V +QLE ++ + + ++ R + +
Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125
Query: 376 VTPSTTV-DGTIGPDAVHLLA---IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDA 431
VTP + D + + LA +G+CG +F+D + G +
Sbjct: 126 VTPGVAMSDNVLNYKENNFLAAVHFGKGSCG---------VSFLDISTGEFLTG----EG 172
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
+ + LL PKEV+++ + Q R F E+ + F D + +
Sbjct: 173 TFDYVEKLLGNFQPKEVLFDR----AKKQDFERYFGTRLCTFEMDDWV----FTDQTARQ 224
Query: 492 KLVQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGD 544
KL++ L G+ A ++Q+ +I I+ L+R+ D +R D
Sbjct: 225 KLLKHFGTKNLKGFGVDHLHNGVVAAGAILQYLEITQHTHINHITSLARIEEDKYVRM-D 283
Query: 545 ILPYKVYRDCLRM--DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ M DG +L +D+ VT G R+LR W+ PLKD + IN RLDVV+YL
Sbjct: 284 RFTIRSLELIAPMNEDGASLLDVIDNTVTPMGGRMLRRWMVFPLKDAKPINERLDVVDYL 343
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + + ++ DLER++ +V
Sbjct: 344 FREPDFRECIDEQFHRIGDLERIISKV 370
>gi|227544212|ref|ZP_03974261.1| DNA mismatch repair protein MutS [Lactobacillus reuteri CF48-3A]
gi|338204107|ref|YP_004650252.1| DNA mismatch repair protein HexA [Lactobacillus reuteri SD2112]
gi|227185805|gb|EEI65876.1| DNA mismatch repair protein MutS [Lactobacillus reuteri CF48-3A]
gi|336449347|gb|AEI57962.1| DNA mismatch repair protein HexA [Lactobacillus reuteri SD2112]
Length = 881
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 163/279 (58%), Gaps = 29/279 (10%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
++ ++ ++ +DVL+SFAV + RP + N G VLKIK H
Sbjct: 530 TRLQKLAQQLAELDVLQSFAVVSE--DYHFVRPKM------------NTGHVLKIKDGRH 575
Query: 799 PFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
P G VPN++L+GED+D LL+TGPNM GKST +R L ++AQ+GCF
Sbjct: 576 PVVEKFMGHQEYVPNNVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQIGCF 630
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L + D +FTR+GA D +++GESTF+VE E + L AT SL++ DE+GRGT
Sbjct: 631 VPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEIGRGT 690
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
+T+DG A+A A+ + + + + LF+THYH LT L++ K+ +
Sbjct: 691 ATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELT---------ALENSLTRLKNVHVGAT 741
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ D ELVFL+++++G +SYG+ VA +AG+P +++ A
Sbjct: 742 EKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSLLLKRA 780
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 100/378 (26%), Positives = 166/378 (43%), Gaps = 54/378 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ +++ ++ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G D +L AI G G V+ A+ D + + ++N+ L+
Sbjct: 118 NGEQARDNNYLAAI-SGQNG------VFSIAYTDLSTGELKTTSLNNANDAV---NELVN 167
Query: 443 VSPKEVI------------YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
+ KEV+ ++ R + + Q + K + S +T LD
Sbjct: 168 LQSKEVVVDGELPAEITTQFKQRNILQSHQPTVLKNAEIS---------YLTQDLDDQAQ 218
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDVLRNGDILPYK 549
+ +V L + ++ S A +Q I + + I H S+ L +++RN
Sbjct: 219 QHVVALLVSYLLTTQKRSLAH---LQKAIAYQPSSFMKIDHYSKTNL-ELMRN------- 267
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R R LD T+ G RLL+ WI PL + I+ R D V+ L+ +
Sbjct: 268 -MRSGKRQGTLAWLLDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSN 326
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL GR+
Sbjct: 327 LQQELIKVYDLERLAGRI 344
>gi|321461885|gb|EFX72912.1| mismatch repair ATPase Msh2 [Daphnia pulex]
Length = 915
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 155/274 (56%), Gaps = 23/274 (8%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
A+S +DVL SFAV + + RP IL + G +++ + HP ++G
Sbjct: 588 ALSKLDVLTSFAVCSISAPIPYVRPQIL----------EKGSGSIELIQVRHPCMELQDG 637
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+PND + +D R ++TGPNMGGKST LR+ +AV++AQ+GCFVP +S
Sbjct: 638 VNFIPNDAIFHKDGH----RFYIITGPNMGGKSTYLRSIGVAVLMAQIGCFVPALSATIS 693
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+ E ETA++ + AT+DSLVI+DELGRGTSTFDG+ +A
Sbjct: 694 IVDAILARVGAGDCHLKGVSTFMAEMIETANITRTATKDSLVIIDELGRGTSTFDGFGLA 753
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I LFATH+H LT P V H+ GD L
Sbjct: 754 WAIAEHIAVKIQPYALFATHFHELTALADEVPAVDNLHVTAL---------TGDNTFTLL 804
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
YR+ G+C +S+GL VA + PQ+V+E A A
Sbjct: 805 YRVQPGSCDQSFGLHVAELVHFPQEVLEIAQKKA 838
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/450 (24%), Positives = 194/450 (43%), Gaps = 88/450 (19%)
Query: 277 YWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS-------GVGKCRQVGIS 329
+ N+ + L FF G+F+ LY DA + + D+ T S G K V +
Sbjct: 20 HGNLPEKLATTLRFFDRGEFFTLYGQDALLASR--DYFKTHSVVKMLGYGAKKLESVVFN 77
Query: 330 ESGIDD-AVEKLVARGY--KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
+S ++ A + L+ + Y ++ + + S Q +A N ++ +++ ST + +
Sbjct: 78 KSHFENFARDVLLVKHYCIEIYNGSKSDWSLQYQASPGNLT---QVEDLIFGSTDITSQV 134
Query: 387 GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
G +LA K G +N G ++VD A ++ V +D+ + + L +L++Q+SPK
Sbjct: 135 G-----ILAFK---IGSENQ---IGCSYVDTYARKILVAQFSDNDAFSNLESLIVQLSPK 183
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
EV+ + + L + L +F V+ L +L + G
Sbjct: 184 EVLIPHGEAYVAPKTMLNRHGL------LVNENKKAEFSSTESVRLLNRLLRFKKGQQEN 237
Query: 507 WSKALENVMQHDIGFSALGGLISHLSRLMLDDV------LRNGDILPYKVYRDCLRMDGQ 560
+ E + H + +AL L+ HL LM D+ L+N D Y +R+D
Sbjct: 238 AAALPEVSLDHSM--AALAALVKHLD-LMADETNFGQYSLQNFDFTQY------MRLDSA 288
Query: 561 -------TLY---------------------LDSCVTSSGKRLLRSWICHPLKDVEGINN 592
T Y L+ C TS G+RLL WI PL D I+
Sbjct: 289 ASAALHLTSYGAEVSTMVTSKAGAPRTIAALLNKCRTSGGQRLLAQWIKQPLTDKNRIDR 348
Query: 593 RLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERL---LGRVKARVQASSCIV-----LPLIG 643
RLDVVE + + ++ + + +LR++PD +RL L + KA +Q + LP++
Sbjct: 349 RLDVVETFVNDVQLRQTITEDHLRRMPDYQRLAKKLQKAKANLQDLYKLYLGLSRLPVLV 408
Query: 644 KKVLKQQ----VKVFGSLVKGLRIAMDLLM 669
+L+ Q + G L++ LR A + L+
Sbjct: 409 DCLLENQGDHAAVLIGVLIQPLRNANEKLV 438
>gi|400601702|gb|EJP69327.1| DNA mismatch repair protein MSH2 [Beauveria bassiana ARSEF 2860]
Length = 925
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 162/569 (28%), Positives = 259/569 (45%), Gaps = 112/569 (19%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G RLL W+ PL E I R +VE ++E+ + + +LR +PDL R
Sbjct: 319 LNHCKTPVGSRLLAQWLKQPLMKKEEIEKRQQLVEAFYTDTELRQTMQETHLRSVPDLYR 378
Query: 623 L---LGRVKAR----VQASSCIV-LP-LIG--KKVLKQQVK-----VFGSLVKGLRIAMD 666
L R KA V+A ++ LP IG + V+ + + + + ++ L ++
Sbjct: 379 LSKRFQRGKANLEDVVRAYQVVIRLPGFIGTLEGVMDETYRDPLDEAYTTKLRDLSDSLG 438
Query: 667 LLMLMHKEGHIIPSLSR---IFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLD 723
L M ++ + +L R I KP G + K L Q + +I +F N DLD
Sbjct: 439 RLQDMVEQTVDLNALDRHEYIIKPDYDAGLRIIRKKLDQLDRSIREEF----NEAAHDLD 494
Query: 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRS---------------------FAVTAS 762
E ++F+E S +H + C+ + R + T
Sbjct: 495 QEADK---KIFLET----SHKVHGV-CMRLTRQEAGCIRNKSKYQECSTQKNGVYFTTKK 546
Query: 763 M-----------------SSGAMHRPLILPQSKNPAVRQDNG-----------------G 788
+ SG +H + + S P + + G
Sbjct: 547 LQAYRREHDQLSQNYNRTQSGLVHEVVQVAASYCPVLERLAGVLAHLDVIVSLAHCSVNA 606
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGED------SDDCLPRT----LLLTGPNMGGK 838
P ++ HP G+ L + L +D +D L R L++TGPNMGGK
Sbjct: 607 PEAYVRPTIHPRGQGQTRLLGARHPCLELQDDVQFITNDVTLTRDTSSFLIITGPNMGGK 666
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R ++AQ+GCFVPC L++ D I R+GA+D + G STF+ E ETA++
Sbjct: 667 STYIRQVGAIALMAQVGCFVPCAEAELTIFDAILARVGASDSQLKGVSTFMAEMLETANI 726
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ AT +SL+I+DELGRGTST+DG+ +A+A+ +++ I C +FATH+H LT HP
Sbjct: 727 LKSATSESLIIIDELGRGTSTYDGFGLAWAISEHIIKEIRCFAMFATHFHELTALADQHP 786
Query: 959 HVTLQHM-ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
HV H+ A + + +E+ LY++ G C +S+G+ VA + P KVV A
Sbjct: 787 HVANLHVTAHIGGAGGDGAKADKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAK 846
Query: 1018 HAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
+ +++ +F+S HE+
Sbjct: 847 --------------RKADELEDFTSKHED 861
>gi|169632885|ref|YP_001706621.1| DNA mismatch repair protein MutS [Acinetobacter baumannii SDF]
gi|238688262|sp|B0VUC9.1|MUTS_ACIBS RecName: Full=DNA mismatch repair protein MutS
gi|169151677|emb|CAP00467.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii]
Length = 881
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 177/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E +I + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSIQVIEKV 842
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|322701080|gb|EFY92831.1| DNA mismatch repair protein msh3 [Metarhizium acridum CQMa 102]
Length = 1098
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 115/282 (40%), Positives = 152/282 (53%), Gaps = 19/282 (6%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ + +++ +D L S + A+ HRP LP S P V G HP A
Sbjct: 800 DAVSSLASLDCLLSLSKVAAQP--GYHRPTFLPSSSEPTVAITQG---------RHPIAE 848
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
+P L S P L+TGPNMGGKS+ +RA L V+LAQ+G FVP +
Sbjct: 849 HTIETGYIPFSTTLAHPS----PLAHLITGPNMGGKSSYVRALALIVLLAQIGSFVPADA 904
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
L+L D I TR GA D + GESTF+VE +ETA +L+ AT SLVI DELGRGTST DG
Sbjct: 905 ISLTLCDAIHTRTGARDNLFAGESTFMVEVSETARILRSATPRSLVIFDELGRGTSTHDG 964
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
AIA AV + C LF THY L + P V+ HM FK+ GD+E
Sbjct: 965 AAIAQAVLEHVATETRCLTLFITHYQNLARVVEGLPGVSNLHM--KFKAGKG--PDGDEE 1020
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
+ FLY + G SYGL VA +A +P+KV++ A++ + M+
Sbjct: 1021 ITFLYEVGEGVAHRSYGLNVARLARIPKKVIDVAANKSGEME 1062
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 161/410 (39%), Gaps = 61/410 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLSGVGKCR 324
Q+ ++K +++D +L +VG + + DA KEL D + + + +
Sbjct: 202 QFLDIKRKHLDTILIVEVGYKFRFFGEDARTAAKELGIVCIPGKMRYDEHPSEAHLDRFA 261
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVTPSTTVD 383
+ + ++LVA G+KVG + Q+ET+ KA + N+ RKL NV T T +D
Sbjct: 262 SASVPVHRLSVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNTPFIRKLTNVYTKGTYID 321
Query: 384 --GTI------GPDAVHLLAIKEGN---CGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
G + P +LL I E G D V G V A + D
Sbjct: 322 EVGELDQQAEGAPAGGYLLCITETKSKGSGTDE-KVDVGILAVQPATGDIIYDNFEDGFM 380
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA----------ALELTPAMA-- 480
+ + L+ +SP E + L + K ++ S S + P MA
Sbjct: 381 RSEIETRLLHISPCEFLIVG-DLTRGTDKLVQHLSGSSTNVFGDRSRVERVPRPPTMAAE 439
Query: 481 ----VTDFL-----DASEVKKLVQLNGYFNGSSSPWSKALENVMQH--DIGFSALGGLIS 529
VT F D S+ + L P + L ++ H + G + L
Sbjct: 440 AYSHVTQFYADKLKDTSQNETASALLDKVLKLPEPVTICLSAMINHLKEYGLEHIFDLTK 499
Query: 530 HLSRLML-DDVLRNGDIL-PYKVYRDCL-RMDGQTLY--LDSCVTSSGKRLLRSWICHPL 584
+ +L NG L +VYR+ + +L+ LD +T G+RLLR W+ PL
Sbjct: 500 YFQSFTTRSHMLVNGTTLESLEVYRNSTDHAERGSLFWALDKTLTRFGQRLLRKWVGRPL 559
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
D + + RL VE L+ V DLE+LL K ++ S
Sbjct: 560 LDQDRLEERLAAVEELLNKQSTAPV--------DDLEKLLATTKIDLERS 601
>gi|335997019|ref|ZP_08562936.1| DNA mismatch repair protein [Lactobacillus ruminis SPM0211]
gi|335352089|gb|EGM53580.1| DNA mismatch repair protein [Lactobacillus ruminis SPM0211]
Length = 875
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 177/317 (55%), Gaps = 41/317 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE-------KASQWSEVIHAISCIDVLRSFAVTAS 762
P+ + + L AE+ + +E LF+E + + ++ AI+ +D L+SFA +
Sbjct: 497 PELKEKEALILGAESKTFELEYRLFVEVREKVKKQIERLQKLAAAIAELDCLQSFASVSE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGED 819
+ P ++ S++ L+IK WHP LG+ VPND+ + E
Sbjct: 557 DNHFVC--PTLVSDSRD-----------LEIKAGWHPVVERVLGKQSY--VPNDVSMPEG 601
Query: 820 SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD 879
D LL+TGPNM GKST +R L I+AQ+GCFVP + + + D IFTR+GA D
Sbjct: 602 RD-----ILLITGPNMSGKSTYMRQLALTAIMAQIGCFVPAKEAKMPIFDQIFTRIGAAD 656
Query: 880 RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939
+++GESTF+VE ET LQ A+++SL++ DE+GRGT+T+DG A+A A+ + + +
Sbjct: 657 DLISGESTFMVEMKETNEALQNASKNSLLLFDEIGRGTATYDGMALAQAIIEYVHDNVQA 716
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LF+THYH LT H+ H+ K+ ELVFL+++ G SYG
Sbjct: 717 KTLFSTHYHELTVLDEELEHLENIHVGAVEKNG---------ELVFLHKMKKGPADRSYG 767
Query: 1000 LQVAVMAGVPQKVVEAA 1016
+ VA +AG+P+K++E A
Sbjct: 768 IHVAKLAGMPEKLLERA 784
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 163/364 (44%), Gaps = 40/364 (10%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
KQY +K QY D LF+++G FYE++ DA G + L+ +T + G+
Sbjct: 12 KQYLEIKEQYPDAFLFYRLGDFYEMFNDDAVKGAQLLELTLTTRNKKSKNPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP--D 389
+ + ++ L+ +GYKV EQ+E + AK ++ R+++ +VTP T +D G +
Sbjct: 72 AVQNYIDILIDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTNIDMRTGEAGE 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+L A+ E + YGFA+ D + + + DD S L ++ + KE++
Sbjct: 127 NNYLTALHEQDGK-------YGFAYADLSTGELRCSILEDDDS---LLNEMISLKTKEIV 176
Query: 450 YENRGLCKEAQKALRKFSAGSAALE-LTPA----MAVTDFLDASEVKKLVQLNGYFNGSS 504
+ + ++ + +RK ++ E + PA AV D E + L L Y +
Sbjct: 177 I-DESVSEKTIEKIRKLRVLVSSQESVEPASELSYAVQDVESDLEKEVLNHLLTYVKKTQ 235
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY- 563
L+ + ++ + + + +L + R G + G L+
Sbjct: 236 KRTLAHLQKAVHYEPAYFLKLDRYAKQNLELLQNA-RTG------------KKSGTLLWL 282
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLL+ WI PL + I R +V +++ + L+++ DLERL
Sbjct: 283 LDETKTAMGARLLKQWISRPLINPAQIKERQLIVNDQLEHYFERSSLQDELKQVYDLERL 342
Query: 624 LGRV 627
GR+
Sbjct: 343 AGRI 346
>gi|429857861|gb|ELA32701.1| DNA mismatch repair protein [Colletotrichum gloeosporioides Nara gc5]
Length = 923
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 163/295 (55%), Gaps = 10/295 (3%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ + A+ + V+ ++ VL + V S + ++H P + P +
Sbjct: 563 TQSSLVNEVVGVAASYCPVLEKLA--GVLANLDVIVSFAHCSVHAP---SEYVRPTIHAR 617
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + +K HP ++ + ND+ L D L ++TGPNMGGKST +R
Sbjct: 618 GQGQTI-LKEARHPCLEMQDDVQFITNDVSLTRDKSSFL----IITGPNMGGKSTYIRQI 672
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 673 GVIALMAQIGCFVPCSEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAE 732
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT HP V H+
Sbjct: 733 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTALADEHPEVHNLHV 792
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
A +E +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 793 AAHISGGNEGGENTKREVTLLYKVEDGVCDQSFGIHVAELVRFPDKVVRMAKRKA 847
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T G RLL W+ PL E I R +VE + ++E+ + ++LR +PDL R
Sbjct: 319 LNHCKTPVGSRLLSQWLKQPLMSKEEITKRQQLVEAFVNDTELRQTMQEEHLRSVPDLYR 378
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGHIIPS 680
L R + GK L+ V+ + +++ G + +M E + P
Sbjct: 379 LAKRFQR-------------GKANLEDVVRAYQVVIRLPGFLGTFEGVM---DEQYKDP- 421
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
L + P+ + SD L K E +D D D NH+
Sbjct: 422 LDEAYTIPLRELSDSLVKLAEMVETTVDLDALD--NHE 457
>gi|398394217|ref|XP_003850567.1| hypothetical protein MYCGRDRAFT_45599 [Zymoseptoria tritici IPO323]
gi|339470446|gb|EGP85543.1| hypothetical protein MYCGRDRAFT_45599 [Zymoseptoria tritici IPO323]
Length = 1016
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 138/231 (59%), Gaps = 7/231 (3%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P + IK HP VPNDI L D+ R LL+TGPNMGGKS+ +R+ L
Sbjct: 742 PGIDIKAARHPMVEQILLDAFVPNDIHLSADT----TRALLITGPNMGGKSSYVRSIALV 797
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
I+AQ+G +VP + L L D +FTR+GA D +M GESTF+VE ETA VL++AT SLV
Sbjct: 798 AIMAQIGSYVPAKSARLGLLDAVFTRMGAFDNMMKGESTFMVELGETADVLKQATPRSLV 857
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH---PHVTLQHM 965
ILDELGRGTST DG AIA AV +VERI C LF THY L + V ++++
Sbjct: 858 ILDELGRGTSTHDGVAIAEAVLVDVVERIKCFTLFITHYQSLARAVEKKWGTEGVDVKNV 917
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
F + + G + + FLY + G SYGL VA +AG+P+ ++E A
Sbjct: 918 HMRFTEDGGDDEAGGKNVTFLYEVGEGTAHRSYGLNVARLAGLPKSLLEVA 968
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 170/417 (40%), Gaps = 60/417 (14%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ Q+Q ++K ++ D LL + G Y L+ DA I K L D +
Sbjct: 101 KLTPLQRQVVDLKRKHPDALLIVEAGYKYRLFGEDARIAAKVLAIMCIPGKYRFDEHPSE 160
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + + V++LV+ G+KVG + QLET+ +A + + + R L N+
Sbjct: 161 AHLDRFASASFPTHRLHVHVKRLVSAGHKVGIVRQLETAALKAAGSNKSKIFERGLTNLY 220
Query: 377 TPSTTVD---GTIG--------PDAVHLLAIKEG---NCGPDNGSVVYGFAFVDCAALRV 422
T T +D G +G P HLL + E G D V G V +
Sbjct: 221 TKGTYIDDEDGLVGGGPDGNGAPATGHLLCLTESYPKGAGSDE-KVQIGLIAVQPGTGDI 279
Query: 423 WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-AALELTPAMAV 481
D + L L+ +SP E + + K +K ++ S G A LE
Sbjct: 280 IYDDFEDGWMRSELETRLLHISPCEFLVVGE-VSKATEKLVQHLSGGDDARLERAEKPKT 338
Query: 482 TDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ-----HDIGFSA---LGGLISHLSR 533
+ S + K +G + +A E H + +A L +I+HL+
Sbjct: 339 MAAMSYSHITKFYADKLKDDGPTPSQVEASEEKGTLLDKVHKLSENATICLSAMITHLTD 398
Query: 534 LMLDDV----------------LRNGDIL-PYKVYRDCL-RMDGQTLY--LDSCVTSSGK 573
L V L NG+ L ++YR+ + + +L+ L+ T G+
Sbjct: 399 YGLQHVFDLTKCFQSFSARSHMLLNGNTLTSLEIYRNQTDQTENGSLFWTLNRTQTKFGQ 458
Query: 574 RLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLERLLGRV 627
RLLR W+ PL + E ++ RL VE L + + V + L K+ DLER L R+
Sbjct: 459 RLLRKWVGRPLLERERLDERLAAVEELKDGAGRLGVDKITSLLGKIRNDLERTLIRI 515
>gi|256078667|ref|XP_002575616.1| hypothetical protein [Schistosoma mansoni]
gi|360043418|emb|CCD78831.1| hypothetical protein Smp_042670.1 [Schistosoma mansoni]
Length = 1074
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 177/326 (54%), Gaps = 44/326 (13%)
Query: 723 DAETLSILIELFI---EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
DA SI+ +F E + W + ++ +D + + + ++ +S M P + + +
Sbjct: 754 DASLRSIMQHIFSSFSESFTHWHMAMSCLAELDCIIALYLYSTNASDVMCLPEFIDLNSS 813
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRT----------- 827
P+L+I HP + +GG + NDI LG S T
Sbjct: 814 TE-------PLLEIVDGIHPCLINTFSGGDIISNDIKLGTTSSMINSPTQHHTLHDMFNN 866
Query: 828 ---LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
+L+TGPNMGGKSTL+R L VILA LGC +P + C L+ D IF+RLGA+DR+++G
Sbjct: 867 ASVILVTGPNMGGKSTLMRQAALLVILAHLGCRIPAKSCKLTPVDRIFSRLGASDRMLSG 926
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE---RI---- 937
ESTFLVE +ETAS+L T SLV++DELGRGTST DG A+A AV L + R
Sbjct: 927 ESTFLVELSETASILHHITPHSLVLMDELGRGTSTHDGSALAGAVVSYLAKPNGRFFNGS 986
Query: 938 NCRLLFATHYHPLTKEFA-----------SHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
R LF+THYH L + A +H + L HMAC ++ SE+ + G + + FL
Sbjct: 987 GPRTLFSTHYHSLVDQVANKDRSTSDEDINHLCIGLGHMACMVEAESES-TNGLENITFL 1045
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKV 1012
Y+ GACP+SYG A +A +P KV
Sbjct: 1046 YKFIPGACPKSYGFNAARLAMLPDKV 1071
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 151/514 (29%), Positives = 227/514 (44%), Gaps = 91/514 (17%)
Query: 199 KKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTS----KFEWLDPSKIRDANRRRPDDPL 254
++N ++ + LL+ SV N E ++ S +L+PSKI+D N RRPD P
Sbjct: 53 RQNGKKINEATDESLLETSVVAQVNEAFEDESVSWTHLSLPFLEPSKIKDINGRRPDHPE 112
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD TLY+P E K + +Q+W +KS+Y DV+LFFKVGKFYE+Y +DA IG KEL
Sbjct: 113 YDSHTLYVPEEFKTKQTPGMRQWWELKSRYTDVILFFKVGKFYEMYHMDAMIGVKELGLV 172
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR-----HTNSVIS 369
C G E ++LV +GYKV RIEQ E+ + R + V+
Sbjct: 173 FMKGSFAHC---GFPEVAFPRMADQLVRKGYKVARIEQTESIDAMNERCKRKSSSEKVVR 229
Query: 370 RKLVNVVTPSTTVDGT------IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW 423
R++ ++TP T T PD+ LLA+ E + G + +G ++ + ++
Sbjct: 230 REVCQIITPGTCTASTRDLINLAHPDSF-LLAVVESH-GDKSYPFAFGIGLLNASTGKIN 287
Query: 424 VGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPA---- 478
+G DD C+ L L P +++ E RG A K+L K S E LTP
Sbjct: 288 IGQFLDDRHCSRLRTFLSHYPPNQLLIE-RGTAGSAIKSLIKTSLSCVPTEFLTPTKQFW 346
Query: 479 --------MAVTDFLDASEVKKLVQLNGYFNGSSSP----WSKALENVMQHD-------- 518
+ D+ V N SS P W L N++ D
Sbjct: 347 SAKNTVQELETADYFPKQTSNTTVDSNHVSKVSSFPDKENWPDVLLNMLSEDDPLGRTVK 406
Query: 519 ----IGFSALGGLISHLSRLMLD-DVLRNGDILPY-----------------KVYRDC-- 554
+ F LG LI +L ++D +VL G I Y +++ D
Sbjct: 407 SEWELAFRCLGALIYYLRYCLIDREVLSLGFIDVYVPIDMKNANSQRSPGSIELFYDTQS 466
Query: 555 -LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
+ +D TL L++C T G+RLLR WI P + I R
Sbjct: 467 QMVLDNITLSNLDIIRNNVDGSQEGSLLQRLNTCCTFFGRRLLRQWITAPPCNPNVIRQR 526
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+E L+ S+++ + + L +LPDLERL+ ++
Sbjct: 527 QLAIENLISISDIIPKLREKLAQLPDLERLITKI 560
>gi|395511357|ref|XP_003759926.1| PREDICTED: DNA mismatch repair protein Msh3 [Sarcophilus harrisii]
Length = 1038
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 186/346 (53%), Gaps = 31/346 (8%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D + E L+ L + F E + +H ++ +D + S A A G RP++ Q +
Sbjct: 708 VLDCNTEWLNFL-DHFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPIL--QEE 762
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN L DS+ R +++TGPNMGGK
Sbjct: 763 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNSTYLSGDSE----RVMIITGPNMGGK 810
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G+STF+ E T+TA +
Sbjct: 811 SSYIKQVALITIMAQIGSYVPAEQATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEI 870
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++P
Sbjct: 871 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVESLTLFVTHYPPVCELEKTYP 930
Query: 959 H-VTLQHMACAFKSNSENYSKG--DQEL----VFLYRLTSGACPESYGLQVAVMAGVPQK 1011
V HM + G D+E+ FLY++T G SYGL VA +A VP++
Sbjct: 931 QWVGNYHMGFLVNEDESTQKPGQEDEEIPDFVTFLYQITRGVASRSYGLNVAKLADVPEE 990
Query: 1012 VVEAASHAALAMKKSIG------ESFKSSEQRSEFSSLHEEWLKTI 1051
+++ A++ + +++ + +SF ++ + + +EW T+
Sbjct: 991 ILKKAAYKSKELERLVNVKRKRLKSFAKLWNATDVTEV-QEWTNTV 1035
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 114/472 (24%), Positives = 197/472 (41%), Gaps = 67/472 (14%)
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL+ L
Sbjct: 135 KSIYTPLEL---------QYLEMKEQHKDAILCIECGYKYRFFGEDAEIAARELNIYCHL 185
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
I + V +LVA+G+KVG ++Q ET+ +A + +S+ +RKL +
Sbjct: 186 D--HNFMTASIPTHRLFVHVRRLVAKGHKVGVVKQTETAALKAIGENKSSLFTRKLTALY 243
Query: 377 TPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVYGFAFVD 416
T ST + + P D V +LL I KE G++ G V
Sbjct: 244 TKSTLIGEDVNPLIKLDDPVNVEEITSDTSNNYLLCICENKENMKDKQKGNITIGIVGVQ 303
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA---- 472
V + D S + L + ++ P E++ + + ++ +R ++ S
Sbjct: 304 PTTGEVVFDSFQDSVSRSELETRISKLQPVELLLPSE-MSDHTERFIRSITSVSVQDDRI 362
Query: 473 ---------LELTPAM-AVTDFL-DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGF 521
E + A +T+F + ++K +G N P +L V+++ F
Sbjct: 363 RVERMDNLYFEYSHAFQQITEFYAEVLDIKASQSFSGILN-LDKPVICSLAAVIRYLKEF 421
Query: 522 SA---------LGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTS 570
+ L L S L + ++ L+N +IL + + G L+ LD T
Sbjct: 422 NLEKMLHNPRNLKKLSSELEFMTINGTALKNLEILQNQTDS---KFRGSLLWVLDHTKTP 478
Query: 571 SGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
G+R L+ W+ PL IN RLD V E ++ S V + +L KLPD+ER L +
Sbjct: 479 FGRRKLKKWVTQPLLKSREINARLDAVSEIILSESSVFGHIQNHLCKLPDIERGLCSIYH 538
Query: 630 RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLL--MLMHKEGHIIP 679
+ ++ L + LK++++ + +I DLL L+ H+ P
Sbjct: 539 KKCSTQEFFLIVKALCHLKREIQALIPAITS-QIKSDLLKQFLLEIPEHLNP 589
>gi|148657805|ref|YP_001278010.1| DNA mismatch repair protein MutS [Roseiflexus sp. RS-1]
gi|189083188|sp|A5UZK7.1|MUTS_ROSS1 RecName: Full=DNA mismatch repair protein MutS
gi|148569915|gb|ABQ92060.1| DNA mismatch repair protein MutS [Roseiflexus sp. RS-1]
Length = 1085
Score = 192 bits (489), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 162/302 (53%), Gaps = 29/302 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
+ DL+ + + ++ ++ I+ IDV + A A G RP + ++
Sbjct: 717 LIDLERRAFARICDVVTGAGARLLRTARMIATIDVFAALAEAAV--RGRYVRPELYDDTR 774
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
L+I G HP VPNDI + ++ L+TGPNM GK
Sbjct: 775 ------------LRIVGGRHPVVEQTLDETFVPNDIEMDTETRQIC----LITGPNMSGK 818
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST+LR L ++AQ+G FVP + + L D IFTR+GA D I TG STF+VE TETA++
Sbjct: 819 STVLRQVALIALMAQIGSFVPADAAEIGLVDRIFTRIGAQDDIATGRSTFMVEMTETAAL 878
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFAS 956
L ++T+ SL+ILDE+GRGTST+DG AIA AV + R+ CR LFATHYH LT +
Sbjct: 879 LAQSTRRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCRTLFATHYHELTDLERT 938
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P + HMA ++ D +VFL+ L G SYG+ VA +AG+PQ V+ A
Sbjct: 939 LPRLKNYHMAA---------TEQDGRVVFLHELRPGGADRSYGIHVAELAGIPQSVIRRA 989
Query: 1017 SH 1018
S
Sbjct: 990 SE 991
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/432 (21%), Positives = 169/432 (39%), Gaps = 84/432 (19%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG------- 321
++ A +QY ++K+ + D +L +++G FYE ++ DA++ L+ +T
Sbjct: 21 ELHAWYRQYRSLKAAHPDAILLYRLGDFYETFDDDAKLVADLLEVTLTYKEFASQKGRDQ 80
Query: 322 --KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS-----------------EQAKAR 362
+C GI ++ V +LV GY+V EQ+ + EQ
Sbjct: 81 KQRCPMAGIPYHAVEGYVARLVGAGYRVAIAEQITETPSSRTDTRPRSIFAAGIEQTSLT 140
Query: 363 HTNSVISRKLVNVVTPSTTVD-GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALR 421
+N ++ RK+V V+TP T ++ G I + + LA D+G + G A+ D +
Sbjct: 141 GSNRMVERKVVRVITPGTIIESGMIPAERNNYLAA----LIADHGRI--GLAYADLSTGE 194
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAV 481
+ + + L +++ E++ +R + L SA LE
Sbjct: 195 FAAVEFSGERAAQQAQGELTRLNAAEILVPDRADLR-----LPGLEPSSARLEQDLEFLT 249
Query: 482 TD----FLDASEVKKLVQLNG---YFNGSSSPWS------KALENVMQHDIGFSALGGL- 527
+ L V + V+ + +G + W + + + H G +L G
Sbjct: 250 REERELLLPGERVARRVERENNARWAHGRVTAWPERRWDLRNAHDTLLHQFGVRSLAGFG 309
Query: 528 -------------ISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------------ 562
I +R V+ N + D + +D QT
Sbjct: 310 LEDRPLAIRAAGAIVQYARETQQGVVANLRSIRAYTPGDAMFLDPQTQRNLELLEGASGT 369
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
LD T G RLLR W+ PL D+ ++ R D VE + ++ + V + LR
Sbjct: 370 TRGSLIGVLDQTRTPMGARLLRRWVSQPLCDLTRLHARHDAVERFVTDAILRASVRETLR 429
Query: 616 KLPDLERLLGRV 627
++ D+ER++ R+
Sbjct: 430 RVGDMERVVNRI 441
>gi|390169711|ref|ZP_10221644.1| DNA mismatch repair protein MutS [Sphingobium indicum B90A]
gi|389587715|gb|EIM65777.1| DNA mismatch repair protein MutS [Sphingobium indicum B90A]
Length = 869
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 149/254 (58%), Gaps = 25/254 (9%)
Query: 766 GAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDD 822
G RP LP+ D GP L+I G HP AL +G V ND LG SD
Sbjct: 563 GGWQRPHFLPE--------DGEGPCLEISGGRHPVVEDALRRDGQPFVANDCRLGA-SD- 612
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
R L+TGPNMGGKST LR + VILAQ G +VP + L+L D +F+R+GA+D +
Sbjct: 613 ---RLWLVTGPNMGGKSTFLRQNAIIVILAQAGAYVPAQSATLTLVDRLFSRVGASDNLA 669
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G STF+VE ETA++L +AT+ S VILDE+GRGTST+DG A+A+AV + E CR L
Sbjct: 670 KGRSTFMVEMVETAAILAQATERSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNRCRCL 729
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
FATHYH LT+ + ++L H+ KGD LV L+ + G SYGL V
Sbjct: 730 FATHYHELTRLAETLSSLSLHHVRA-------REWKGD--LVLLHEVAEGPADRSYGLAV 780
Query: 1003 AVMAGVPQKVVEAA 1016
A +AG+P V++ A
Sbjct: 781 ARLAGLPPAVLKRA 794
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 149/361 (41%), Gaps = 25/361 (6%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY +K++ D LLF+++G F+EL+ DA+ LD +T G + G+
Sbjct: 4 QYLALKAEAQDCLLFYRMGDFFELFFEDAKAAAATLDIALTSRGEHGGAPIPMCGVPVHS 63
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+ + +L+ G++V EQ ET +AKAR + S+++R +V VT T + T+
Sbjct: 64 AESYLARLIKAGHRVAIAEQTETPAEAKARGSKSLVARAIVRYVTAGTLTEETLLDSRRD 123
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+ G + YG A D + R T+ A L A L ++ P E++ +
Sbjct: 124 NMLAALAQVGGEEAD-EYGLAAADISTGRFETLTLR----AADLPAELARLRPSEIVLPD 178
Query: 453 RGLCKEA------QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
GL E +A S AL+ +A D +L + G
Sbjct: 179 -GLDLELPDSHPFDRAAFSSSRAETALKRIFGVATLDGFGQFSRAELAAMGGLLG----- 232
Query: 507 WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDS 566
L++ + + F A + + + +D R L R +D
Sbjct: 233 ---YLDHAGKGTLPFLAPPVRKTSGAHVAIDAATRES--LEITTTMSGTRAGSLLGAVDR 287
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
VT +G RLL + PL D I RL +V+ ++ + + LR LPD+ R LGR
Sbjct: 288 TVTGAGARLLAQDLSAPLMDQPAIEARLGLVQLFHDDAMLRDQLRVALRALPDIGRALGR 347
Query: 627 V 627
+
Sbjct: 348 L 348
>gi|315640095|ref|ZP_07895218.1| DNA mismatch repair protein HexA [Enterococcus italicus DSM 15952]
gi|315484142|gb|EFU74615.1| DNA mismatch repair protein HexA [Enterococcus italicus DSM 15952]
Length = 846
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 174/315 (55%), Gaps = 36/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE S +E LFIE Q + I AIS +DVL+SFA +
Sbjct: 495 PELKKLEALILEAEERSTELEYRLFIEVREQVKQAITRLQALAKAISTVDVLQSFA---T 551
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
+S + + Q + A+ Q V K+ G A NDI++ +++
Sbjct: 552 ISERYQYVKPNMNQQQKLAIVQGRHPVVEKVLGQQEYIA----------NDIVMDQET-- 599
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L VILAQ+GCFVP E L + D IFTR+GA+D ++
Sbjct: 600 ---FILLITGPNMSGKSTYMRQLALTVILAQIGCFVPAESAELPIFDQIFTRIGASDDLI 656
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E LQ AT +SL++ DELGRGT+T+DG A+A A+ + I + L
Sbjct: 657 AGQSTFMVEMMEANQALQHATVNSLILFDELGRGTATYDGMALAQAIIEYIHRDIRAKTL 716
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT H+ QH+ K E+VFL+++ +G +SYG+ V
Sbjct: 717 FSTHYHELTVLDQELAHLRNQHVGAVEKEG---------EVVFLHKMMTGPADKSYGIHV 767
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P++++ AS
Sbjct: 768 AKLAGLPKELLTRAS 782
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 163/393 (41%), Gaps = 88/393 (22%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-----C 323
K + +QY+++K Y D LF+++G FYEL+ DAE + L+ +TL+ K
Sbjct: 6 KQTPMMEQYFSIKKDYQDAFLFYRLGDFYELFYDDAEKAAQILE--LTLTSRNKNADDPI 63
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ L+ +GYKV EQ+E + T ++ R+++ ++TP T +D
Sbjct: 64 PMCGVPYHAAAGYIDTLIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLITPGTVMD 118
Query: 384 GT--IGPDAVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIND-DASCAALGAL 439
G + +L A IK+G+ YG A+ D + + ++D D L L
Sbjct: 119 GKGLHSKENNYLTAVIKDGDD--------YGIAYADLSTGEMKATVVSDEDIVFNELATL 170
Query: 440 LMQVSPKEVIYEN---RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQL 496
KE+I L K ++ L M+V A+E Q+
Sbjct: 171 ----ETKELIVAQPLPDNLTKRIEQ------------RLGAVMSV----QATE----QQV 206
Query: 497 NGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR--DC 554
G + + P +K A+ L ++L R + + G + P + Y+
Sbjct: 207 GGLADAITEPLAK------------QAVELLHAYLQRTQMRQL---GHLQPAQFYQTDHY 251
Query: 555 LRMDGQTLY--------------------LDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
L+MD + Y LD T+ G RLL+ WI HPL I R
Sbjct: 252 LKMDYYSKYNLELTQAIRTGKKQGTLLWLLDETKTAMGARLLKQWIDHPLIQQAAIERRQ 311
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
V L+ + + + L+ + DLERL GR+
Sbjct: 312 LQVASLLHAFFERVDLQESLKGVYDLERLAGRI 344
>gi|358391487|gb|EHK40891.1| hypothetical protein TRIATDRAFT_78319 [Trichoderma atroviride IMI
206040]
Length = 1099
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 172/340 (50%), Gaps = 39/340 (11%)
Query: 680 SLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKAS 739
+LSR P + D+ AA D F D+ + ++ AE +
Sbjct: 754 ALSRFHTPEVIRLITERDQSREALAAACDKAFKDF----LAEIAAEYQPL---------- 799
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
+ I A++ +D L S + A+ +P LP + P++ G HP
Sbjct: 800 --RDAISALATLDCLLSLSKVAAQP--GYSKPTFLPSTSEPSISISQG---------RHP 846
Query: 800 FALGENGGLPVPNDILLGEDSDDCLPRTL--LLTGPNMGGKSTLLRATCLAVILAQLGCF 857
A +P L P TL L+TGPNMGGKS+ +RA L V+L+Q+G F
Sbjct: 847 MAEQTLESSYIPFTTTLAH------PSTLAHLITGPNMGGKSSFVRAVALIVLLSQIGSF 900
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L+L D I TR GA D + GESTF+VE +ETA +L+ AT SLVILDELGRGT
Sbjct: 901 VPADSLTLTLCDAIHTRAGARDNLFAGESTFMVEVSETARILRSATPRSLVILDELGRGT 960
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
ST DG AIA +V +V C LF THY L + P VT HM K N++
Sbjct: 961 STHDGAAIAQSVLHHVVTETRCLTLFITHYQNLARIADGLPGVTNVHM----KFNAQKGE 1016
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
G++E+ FLY + G SYGL VA +A +P+KV++ A+
Sbjct: 1017 DGEEEITFLYEVGEGIAHRSYGLNVARLARIPKKVLDVAA 1056
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 166/411 (40%), Gaps = 63/411 (15%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLSGVGKCR 324
Q+ +K ++MD +L +VG + + DA + KEL D + + + +
Sbjct: 203 QFLEIKRKHMDTILIVEVGYKFRFFGEDARVAAKELSIVCIPGKMRYDEHPSEAHLDRFA 262
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVTPSTTVD 383
I + ++LVA G+KVG + QLET+ KA + N+ RKL NV T T +D
Sbjct: 263 SASIPVHRLPVHAKRLVAAGHKVGVVRQLETAALKKAGDNRNAPFVRKLTNVYTKGTYID 322
Query: 384 --GTI------GPDAVHLLAIKE----GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDA 431
G + P +LL I E G+ +N +V G V A + T D
Sbjct: 323 ENGELDSQDASAPSGGYLLCITETATKGSGADENVNV--GILAVQPATGDIIYDTFEDGF 380
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-------AALELTPAMAVTDF 484
+ + L+ +SP E + L K K + S S + +E P
Sbjct: 381 MRSEIETRLLHISPCEFVIVG-DLTKGTDKLILHLSGSSTNVFGDRSRVERVPKSKTMAA 439
Query: 485 LDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS-ALGGLISHLSRLMLDDV---- 539
S V + + S L+ V++ + L +I+HL L+ +
Sbjct: 440 EAYSHVTQFYADKVKEASDNETASALLDKVLKLPEAVTICLSAMITHLQEYGLEHIFGLT 499
Query: 540 ------------LRNGDIL-PYKVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHP 583
L NG L ++YR+ + +L+ +D +T G+RLLR W+ P
Sbjct: 500 KYFQSFSTRSHMLVNGTTLESLEIYRNSTDHSHRGSLFWAVDKTLTRFGQRLLRKWVGRP 559
Query: 584 LKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
L D E + RL V+ L+ Q + DLERLL KA ++ S
Sbjct: 560 LLDRERLEERLAAVQELLDK--------QSTSPVDDLERLLSTTKADLERS 602
>gi|392567582|gb|EIW60757.1| hypothetical protein TRAVEDRAFT_57899 [Trametes versicolor FP-101664
SS1]
Length = 1084
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 169/309 (54%), Gaps = 12/309 (3%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
L+ L E+ + + + ++ ++ D L S A A+ A RP + + + D
Sbjct: 788 LTFLAEITDKYYALLRDAVNKLAVADCLFSLAQVAAQEGYA--RPEFVDRKEGEGSEND- 844
Query: 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
VL+I HP VPN + +G R ++TGPNMGGKS+ +R T
Sbjct: 845 ---VLEIVEGRHPMIEALRTDPFVPNSVRMGGSET----RHRIITGPNMGGKSSAVRMTA 897
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L ++AQ+G +VP + LSL D I TR+GA+D + G STF+VE ET+ +LQ AT +
Sbjct: 898 LCAVMAQIGSYVPAKSMKLSLLDGILTRMGASDELARGRSTFMVEMQETSDILQMATSKT 957
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
LV+LDELGRGTSTFDG AIA AV + LV+ + C+ LF THY + + + +M
Sbjct: 958 LVVLDELGRGTSTFDGMAIAGAVLQHLVQEVKCKTLFITHYPQVATDLERMFPSDVGNMH 1017
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
F E G +E+ FLYRL G ES+G++ A +AG+P+ V++ A+ A MK
Sbjct: 1018 MGF--TEETRVDGTREVTFLYRLEPGLVTESFGVECARLAGLPETVLQVATTKAANMKIV 1075
Query: 1027 IGESFKSSE 1035
I E K ++
Sbjct: 1076 IEERIKRTK 1084
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/397 (23%), Positives = 155/397 (39%), Gaps = 54/397 (13%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
Q +K++Y +L + G ++ DA+I KEL + I D
Sbjct: 217 QVRELKAKYPGTVLMIQSGYKMLFFDEDAKIASKELG--MVCFPKRNFLTAMIPLHRRDV 274
Query: 336 AVEKLVARGYKVGRIEQLETSEQAKARHT-NSVISRKLVNVVTPSTTVDG---------T 385
++KL++ GYKVG +EQ ET+ KA T N + R++ ++ T +T VD
Sbjct: 275 HMKKLLSHGYKVGIVEQTETAALKKAGETRNELFGREVTHMYTAATFVDDLNSVDELDPN 334
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
P + L +G G D + A VW D+ L ++ P
Sbjct: 335 SAPPLMCFLEEPKGGMGTDERVTIAMIAISPSTGDVVW-DEFEDNHMRTELETRMVHTKP 393
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAA------LELTPAMAVTDFLDASEVKKLVQLNGY 499
E++ ++ L +K ++ F+ S + MA TD + Y
Sbjct: 394 YELLLPSKKLSPATEKMIKHFTEHSHTEHRMRIERFSKQMAYTDAF-------AILSKFY 446
Query: 500 FNGSSSPWSKALEN--VMQHDIGFS-----ALGGLISHLSRLMLDDVLRNGDILPYKVYR 552
+ + + S+ N +M FS L +++L+ + D LR R
Sbjct: 447 TDKTHANASEGFNNGDLMAAITEFSKIVVITLAQSLNYLATFNVADALRETRFFSKFTER 506
Query: 553 DCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
+ ++ TL LD T G RLLRSW+ PL D +
Sbjct: 507 THMLLNANTLTNLEIYVNDTDYTTKGSLMWILDRTSTKFGARLLRSWVGKPLVDAAALRE 566
Query: 593 RLDVVEYLMKN-SEVVMVVAQYLRKLPDLERLLGRVK 628
R D VE ++ N S + + + LR+LPDL R L R++
Sbjct: 567 RTDAVEEILSNRSPRLTQLRELLRRLPDLARGLCRIQ 603
>gi|260940443|ref|XP_002614521.1| hypothetical protein CLUG_05299 [Clavispora lusitaniae ATCC 42720]
gi|238851707|gb|EEQ41171.1| hypothetical protein CLUG_05299 [Clavispora lusitaniae ATCC 42720]
Length = 1002
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 146/241 (60%), Gaps = 7/241 (2%)
Query: 790 VLKIKGLWHPFALG--ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
V+ +K HP L +N G VPNDI L D + R L++TGPNMGGKS+ ++ L
Sbjct: 738 VMSVKNSVHPILLNLPQNNGQYVPNDIKLSTDDN----RVLIITGPNMGGKSSYVKQIAL 793
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
I+ Q+GC +PC + + D+IF R+GA+D I+ G+STFLVE E+A+++Q T SL
Sbjct: 794 LAIMTQIGCLLPCSSATMGIFDSIFIRMGASDNILRGKSTFLVEMLESANIIQNYTPKSL 853
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRL-LFATHYHPLTKEFASHPHVTLQHMA 966
VILDE+GRGT T DG ++AYA+ R ++E L LF TH+ L+ V HMA
Sbjct: 854 VILDEIGRGTGTSDGISLAYAILRYIIEDKKKPLTLFITHFPSLSTLETEFNDVKNFHMA 913
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
K +E E++FLY+L SG SYGL VA +AG+ ++++A + + ++K+
Sbjct: 914 FVEKKRNEGKESEWPEVIFLYKLVSGVVSNSYGLNVAKLAGIDDSIIQSAYNVSESIKRL 973
Query: 1027 I 1027
I
Sbjct: 974 I 974
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/483 (22%), Positives = 190/483 (39%), Gaps = 88/483 (18%)
Query: 239 PSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYE 298
PSK N ++P + A K++ +KQ+ ++KS++ D +L +VG ++
Sbjct: 66 PSKKPSENAKKP-----------VSSTAKSKLTPLEKQFIDLKSEHGDKILAIQVGYKFK 114
Query: 299 LYELDAEI-----------GHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347
+ DA G+ ELD + T C I ++ + +++L+ G KV
Sbjct: 115 FFGNDAVTASKLLNIMLLPGNLELDER-THDRFAYC---SIPDNRLHVHLQRLLNHGLKV 170
Query: 348 GRIEQLETS--EQAKARHTNSVISRKLVNVVTPST-------TVDGTIGPD--------- 389
G ++Q ET+ + ++ + + + RKL V T +T T D TI
Sbjct: 171 GVVKQTETAAIKSVESSNKSGLFERKLTGVYTKATYMGDELLTGDPTISRSNNVADSLDG 230
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
++L + E N V V + +D S L LM +P EVI
Sbjct: 231 ETYVLCVNESNFSKQTSLVA-----VQPLTGDIVFDVFSDTPSRDELETRLMYFNPSEVI 285
Query: 450 Y--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPW 507
E+ + E K LR ++ AMA+T + SE + ++ +F+
Sbjct: 286 VITEDEEISPETSKVLRLKNS---------AMAITQKIQRSETEIKSDMHEFFSSVDPDG 336
Query: 508 SKAL---ENVMQHDIGFSA-LGGLISHLSRLMLDDVLRNGD------------ILP---- 547
A + + +G A + LI +LS L ++ +LP
Sbjct: 337 HNAYLTEHYTLNYPLGIQACIIELIDYLSEFKLSNIFTIPSNFSSLTDAHMYMVLPASTL 396
Query: 548 -----YKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
++V D G L+ LD+ T G R LR WI PL E I R V+ L
Sbjct: 397 KALDIFEVNEDPTTKKGTLLWLLDNTFTRKGSRTLRKWINRPLVKREEIEQRAKAVDVLK 456
Query: 602 KNSEVVMVVA--QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ V ++ A Q + K+ L R ++ S+ + I +K L ++ F +++
Sbjct: 457 SGAFVHILDAFKQAVMKIGKSGVDLDRSLIKIHYSATYMSNKITRKDLYNMLRSFHEILE 516
Query: 660 GLR 662
R
Sbjct: 517 LFR 519
>gi|114798005|ref|YP_759027.1| DNA mismatch repair protein MutS [Hyphomonas neptunium ATCC 15444]
gi|122942786|sp|Q0C5G6.1|MUTS_HYPNA RecName: Full=DNA mismatch repair protein MutS
gi|114738179|gb|ABI76304.1| DNA mismatch repair protein MutS [Hyphomonas neptunium ATCC 15444]
Length = 890
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 178/322 (55%), Gaps = 41/322 (12%)
Query: 714 YQNHDVTDL---------DAETLSILI-ELFIEKASQWSE----VIHAISCIDVLRSFAV 759
+ H++ DL +A+ I I E F K + + + A++ +DV S AV
Sbjct: 526 FSTHELADLAGRIGRAEDEAKAREIAIFEAFCAKVEELTGPLAVIAAALAELDVAASHAV 585
Query: 760 TASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILL 816
A+ +GA+ RP + P+ PV + KGL HP AL + G ND+ L
Sbjct: 586 WAA-ETGAV-RPALDPR------------PVFEAKGLRHPVVEAALRKEGKGFTANDLHL 631
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
+ ++ R LL+TGPNM GKST LR + LAVILAQ G FVP L L+D +F+R+G
Sbjct: 632 DAEGNEGA-RFLLVTGPNMAGKSTYLRQSALAVILAQAGAFVPAASLRLGLSDRVFSRVG 690
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
A+D + G STF+VE ETA++L +AT +S VILDE+GRGT+T+DG AIA+A L +
Sbjct: 691 ASDDLARGRSTFMVEMVETAAILNQATPESFVILDEVGRGTATWDGLAIAWAAAEHLHDT 750
Query: 937 INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
CR +FATHYH LT A P A + S + Q+L+FL+ + G
Sbjct: 751 NRCRAIFATHYHELTDLAARMP---------AASNASLKAREWKQDLIFLHEVQPGPADR 801
Query: 997 SYGLQVAVMAGVPQKVVEAASH 1018
SYG+QVA +AG+P+ V A
Sbjct: 802 SYGVQVAKLAGLPRAAVARAGQ 823
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 171/394 (43%), Gaps = 60/394 (15%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC 323
P A + + QY ++K+++ LLFF++G FYEL+ DA LD +T G
Sbjct: 7 PSATTEPTPFMAQYLSIKAEHPGALLFFRMGDFYELFFQDAVEAASILDITLTSRGEHDG 66
Query: 324 RQV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
+ + G+ + + +L+ G +V EQ+ET +AK R + S++ R +V +VTP
Sbjct: 67 KPIPMAGVPYHAAEGYLARLIKGGCRVAVCEQMETPAEAKKRGSKSIVQRGVVRIVTP-- 124
Query: 381 TVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW---VGTINDDASCAA-L 436
GT+ DA LL ++G F+ AAL V G + A AA L
Sbjct: 125 ---GTLTEDA--LLPARQGQA-----LAAIAFSGAGEAALAVCDVSTGAFDLTAIPAARL 174
Query: 437 GALLMQVSPKEVIYE----NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK 492
G L+ E++ +R L EA+ L SA + P A T + +K+
Sbjct: 175 GEALLAWPLSELVISADDADRPLILEARGFL------SAPITERPGRAATAKSGEALLKE 228
Query: 493 LVQLNGYFNGSSSPWSKALENVMQHD-IGFSALGGLISHLSRLMLDDVLR---------N 542
+ L AL+++ + F+A G L+ ++ +R
Sbjct: 229 VFGL------------AALDSLGDFSRVEFAAAGLLLDYVKLTQAGAPIRLRAPRRPDTG 276
Query: 543 GDILPYKVYRDCLRM--------DGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
G +L R L + DG L +D VT+ G RLL + + P + V I +R
Sbjct: 277 GILLIDPATRASLEIDRSISGGRDGTLLAVIDRTVTAPGARLLAARLARPSRSVSEITSR 336
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
D V +L+ ++ + V L+ PDLER + R+
Sbjct: 337 YDAVSHLLGDAGQLEDVRVRLKSAPDLERAVMRL 370
>gi|294013487|ref|YP_003546947.1| DNA mismatch repair protein MutS [Sphingobium japonicum UT26S]
gi|292676817|dbj|BAI98335.1| DNA mismatch repair protein MutS [Sphingobium japonicum UT26S]
Length = 883
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 149/254 (58%), Gaps = 25/254 (9%)
Query: 766 GAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDD 822
G RP LP+ D GP L+I G HP AL +G V ND LG SD
Sbjct: 577 GGWQRPHFLPE--------DGEGPCLEITGGRHPVVEDALRRDGQPFVANDCRLGA-SD- 626
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
R L+TGPNMGGKST LR + VILAQ G +VP + L+L D +F+R+GA+D +
Sbjct: 627 ---RLWLVTGPNMGGKSTFLRQNAIIVILAQAGAYVPAQSATLTLVDRLFSRVGASDNLA 683
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G STF+VE ETA++L +AT+ S VILDE+GRGTST+DG A+A+AV + E CR L
Sbjct: 684 KGRSTFMVEMVETAAILAQATERSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNRCRCL 743
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
FATHYH LT+ + ++L H+ KGD LV L+ + G SYGL V
Sbjct: 744 FATHYHELTRLAETLSSLSLHHVRA-------REWKGD--LVLLHEVAEGPADRSYGLAV 794
Query: 1003 AVMAGVPQKVVEAA 1016
A +AG+P V++ A
Sbjct: 795 ARLAGLPPAVLKRA 808
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 150/361 (41%), Gaps = 25/361 (6%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY +K++ D LLF+++G F+EL+ DA+ LD +T G + G+
Sbjct: 18 QYLALKAEAQDCLLFYRMGDFFELFFEDAKAAAATLDIALTSRGEHGGAPIPMCGVPVHS 77
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+ + +L+ G++V EQ ET +AKAR + S+++R +V VT T + T+
Sbjct: 78 AESYLARLIKAGHRVAIAEQTETPAEAKARGSKSLVARAIVRYVTAGTLTEETLLDSRRD 137
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+ G + YG A D + R T+ A L A L ++ P E++ +
Sbjct: 138 NMLAALAQVGGEEAD-EYGLAAADISTGRFETLTLR----AADLPAELARLRPSEIVLPD 192
Query: 453 RGLCKEA------QKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
GL E +A S AAL+ +A D +L + G
Sbjct: 193 -GLDLELPDSHPFDRAAFSSSRAEAALKRIFGVATLDGFGQFSRAELAAMGGLLG----- 246
Query: 507 WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDS 566
L++ + + F A + + + +D R L R +D
Sbjct: 247 ---YLDHAGKGTLPFLAPPVRKTSGAHVAIDAATRES--LEITATMSGTRAGSLLGAVDR 301
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
VT +G RLL + PL D I RL +V+ ++ + + LR LPD+ R LGR
Sbjct: 302 TVTGAGARLLAQDLSAPLMDQPAIEARLGLVQLFHDDAMLRDQLRVTLRALPDIGRALGR 361
Query: 627 V 627
+
Sbjct: 362 L 362
>gi|145220133|ref|YP_001130842.1| DNA mismatch repair protein MutS [Chlorobium phaeovibrioides DSM 265]
gi|189083175|sp|A4SFT1.1|MUTS_PROVI RecName: Full=DNA mismatch repair protein MutS
gi|145206297|gb|ABP37340.1| DNA mismatch repair protein MutS [Chlorobium phaeovibrioides DSM 265]
Length = 874
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 166/300 (55%), Gaps = 36/300 (12%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTAS-----MSSGAMHRPLILPQ 776
L+AE L E+A+ E AI+ ID L SFA++A H L++ +
Sbjct: 537 LEAEIFQALCASIAERAASIQESALAIAEIDTLASFALSAKEYGYCKPEMKEHEGLLITE 596
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
++P + +I PF V ND D R L++TGPNM
Sbjct: 597 GRHPVLE--------RIMKPDEPF---------VKNDCHF-----DGQQRMLMITGPNMA 634
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKS+ LR T L V+LAQ G FVP E + + D IFTR+GA+D + +GESTFLVE E A
Sbjct: 635 GKSSYLRQTGLIVLLAQAGSFVPAERAEIGMVDRIFTRVGASDNLASGESTFLVEMNEAA 694
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
S+L AT SL++LDE+GRGTSTFDG +IA+++ ++ R+ R LFATHYH L++
Sbjct: 695 SILNNATSSSLILLDEIGRGTSTFDGMSIAWSMSEYIITRLGARTLFATHYHELSELEER 754
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P V + + A +S + ++FL ++ G+ SYG++VA MAG+P +V+E A
Sbjct: 755 LPGV-VNYNATVVESG--------ERVIFLRKIVRGSTDNSYGIEVARMAGMPNEVIERA 805
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K++S +QY +VK QY D LL F+VG FYE + DA ++ +T G
Sbjct: 8 ASKELSPMMRQYLDVKKQYADYLLLFRVGDFYETFFDDAATISAAVNIVLTRRSNGSAPD 67
Query: 326 V---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
+ G + + +LV +G+KV EQ+E +AK ++ R++ +VTP T
Sbjct: 68 IPMAGFPYHASEGYIARLVRKGFKVAVCEQVEDPAEAKG-----IVKREITEIVTPGVTY 122
Query: 383 DGTIGPD-------AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTI 427
+I D AV L KEG + V G A++D + ++
Sbjct: 123 SDSILEDRHNNYLAAVAFL--KEGR------TPVAGIAYLDVTTAEFRIASL 166
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D V G RL+R W+ PL+ E I R D VE L+++SE+ V L ++ DLER
Sbjct: 306 MDRTVNPMGARLIRRWLQRPLRVAEAIAERHDGVEELLQSSELSEGVRCSLSEINDLERS 365
Query: 624 LGRV 627
L R+
Sbjct: 366 LARI 369
>gi|218439471|ref|YP_002377800.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7424]
gi|218172199|gb|ACK70932.1| DNA mismatch repair protein MutS [Cyanothece sp. PCC 7424]
Length = 885
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 162/545 (29%), Positives = 249/545 (45%), Gaps = 114/545 (20%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV----------------- 606
LD VT+ G R LR W+ PL D++GI R + +E L +N +
Sbjct: 336 LDRTVTAMGGRALRRWLIEPLLDIKGITARQNTIEELKENPTLRQDLRQLLREIYDLERI 395
Query: 607 -------------VMVVAQYLRKLPDLERL--LG-----RVKARVQASSCIVLPLIGKKV 646
++ +AQ L KL DL +L LG R +V + L ++GK+V
Sbjct: 396 TGRVGAGTANARDLLALAQSLVKLTDLSQLASLGTSPYLRALQKVPSE----LEILGKEV 451
Query: 647 LKQQV-------KVFGSLVKGLRIAMDLLMLMHKE------------------GHIIPSL 681
+ V K G + G+ +D + +++E ++
Sbjct: 452 IGHLVESPPLHLKEGGVIRDGINFQLDEMRRLYEEDQQWLANLEVTERQRTGVSNLKVGY 511
Query: 682 SRIF----KPPIFDGSDGLDKF-----LTQFEAAIDSDFPDYQNH------DVTDLDAET 726
++ F P D + LT E I + + ++ D+ L+ E
Sbjct: 512 NKTFGYYLSMPRSKAEQAPDNYIRKQTLTNEERYITPELKERESRILNAKDDLNRLEYEI 571
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
+ L EKA++ +V A++ IDVL A ++ A+++ P+ +
Sbjct: 572 FAGLRTKVAEKAAEIRQVAKAVAAIDVL------AGLAEIAVYQDYCRPEMVD------- 618
Query: 787 GGPVLKIKGLWHPFALGENG-GLPVPNDILLGED-SDDCLPRTLLLTGPNMGGKSTLLRA 844
G +++I HP G G VPN LG + P ++LTGPN GKS LR
Sbjct: 619 -GRLIEIVDGRHPVVEQSLGAGFFVPNSTYLGSLLEEQNYPDLIILTGPNASGKSCYLRQ 677
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L ++AQ+G FVP + L + D IFTR+GA D + TG+STF+VE ETA++L AT
Sbjct: 678 VGLIQLMAQIGSFVPAKTAKLGICDRIFTRVGAMDDLATGQSTFMVEMNETANILNHATS 737
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLV+LDE+GRGT+TFDG +IA+AV L I R +FATHYH L E AS
Sbjct: 738 RSLVLLDEIGRGTATFDGLSIAWAVAEYLAAEIQSRTIFATHYHELN-ELAS-------- 788
Query: 965 MACAFKSNSENYS----KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
SN NY + E++FL+++ G +SYG++ +AG+P V++ A
Sbjct: 789 ----ILSNVANYQVTVKEMPNEIIFLHQVRPGGADKSYGIEAGRLAGLPAVVIDRAKQVM 844
Query: 1021 LAMKK 1025
++K
Sbjct: 845 TQIEK 849
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG----VGKCR 324
K++ + Y VK QY + LL ++VG F+E + DA +EL+ +T +G+
Sbjct: 31 KLTPMYQHYVEVKEQYPNTLLVYRVGDFFECFFQDAVTIAQELELVLTSKDGGREIGRIA 90
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ LV +GY V +Q+E S A A ++ R++ ++TP T D
Sbjct: 91 MTGVPHHALERYSRLLVEKGYAVAICDQVEDSAAAAA--AGRMVERQITKLLTPGTLTD 147
>gi|345884830|ref|ZP_08836230.1| DNA mismatch repair protein mutS [Prevotella sp. C561]
gi|345042329|gb|EGW46430.1| DNA mismatch repair protein mutS [Prevotella sp. C561]
Length = 886
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 179/332 (53%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D + L++ +L++E E I + I+ +D
Sbjct: 510 LAQAERYITPELKEYE-EKILGADEKILALETQLYMELIQDMQEFIPQIQINANLIAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF + M RP++ + VL IK HP +GE
Sbjct: 569 CLLSFMKVSQMQRYV--RPVV------------DDSEVLDIKQGRHPVIETQLPIGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL D + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + +
Sbjct: 613 -YVPNDVLL----DTEHQQIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARIGM 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R R LFATHYH L + + P + K+ + + + D +++F
Sbjct: 728 AIVEYLHEHSRAQARTLFATHYHELNEMEKNFPRI---------KNFNVSVKEVDGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 779 VRKLEKGGSEHSFGIHVAEIAGMPRSIVKRAN 810
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 169/387 (43%), Gaps = 49/387 (12%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG----KC 323
K ++ KQ++++K+Q+ L+ F+ G FYE Y DA + L +T G
Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESARILGITLTRRNNGGSGDSI 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA--------RHTNSVISRKLVNV 375
G +D + KL+ G +V +QLE ++ + + ++ R + +
Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125
Query: 376 VTPSTTV-DGTIGPDAVHLLA---IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDA 431
VTP + D + + LA +G+CG +F+D + G +
Sbjct: 126 VTPGVAMSDNVLNYKENNFLAAVHFGKGSCG---------VSFLDISTGEFLTG----EG 172
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
+ + LL PKEV+++ + Q+ R F E+ + F D + +
Sbjct: 173 TFDYVEKLLGNFQPKEVLFDR----AKKQEFERYFGTRLCTFEMDDWV----FTDQTARQ 224
Query: 492 KLVQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGD 544
KL++ L G+ + A +++Q+ +I I+ L+R+ D +R D
Sbjct: 225 KLLKHFGTKNLKGFGVDHLNNGIVAAGSILQYLEITQHTHINHITSLARIEEDKYVRM-D 283
Query: 545 ILPYKVYRDCLRM--DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ M DG +L +D+ VT G R+LR W+ PLKD + IN RLDVV+YL
Sbjct: 284 RFTIRSLELIAPMNEDGSSLLNVIDNTVTPMGGRMLRRWMVFPLKDEKPINERLDVVDYL 343
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + + ++ DLER++ +V
Sbjct: 344 FREPDFRECINEQFHRIGDLERIISKV 370
>gi|221633094|ref|YP_002522319.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159]
gi|221157200|gb|ACM06327.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159]
Length = 884
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 152/265 (57%), Gaps = 21/265 (7%)
Query: 790 VLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
VL+I+G HP G V ND L +SD + +LTGPNM GKST LR L
Sbjct: 595 VLEIRGGRHPVVETTLEAGRFVSNDARLDTESDQIV----ILTGPNMAGKSTFLRQVALI 650
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LAQ+G FVP E + L D IFTR+GA D I G+STF+VE ETAS+L++AT SLV
Sbjct: 651 VLLAQVGSFVPAEFARIGLVDRIFTRIGAQDDIAAGQSTFMVEMVETASILRQATLRSLV 710
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
+LDE+GRGTST+DG AIA AV L R+ CR LFATHYH LT+ P V M
Sbjct: 711 VLDEVGRGTSTYDGLAIARAVVEYLHNHPRLGCRTLFATHYHELTELERVLPRVRNYRM- 769
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ +GD+ +VFL+R+ G +SYG+ VA +AG+P VV A +
Sbjct: 770 -------DVLEEGDR-VVFLHRVVRGGADKSYGIHVAQLAGLPHAVVRRAREILQEL--- 818
Query: 1027 IGESFKSSEQRSEFSSLHEEWLKTI 1051
ES +S E S+ +E TI
Sbjct: 819 --ESARSGEHTRRRQSMAKEVPLTI 841
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISE 330
+KQY +K Q D LL F++G FYEL++ DAE+ + LD +T +GK ++V GI
Sbjct: 28 RKQYLEIKRQVPDALLLFRLGDFYELFDDDAEVASRILDIALTSRDLGKGQRVPMAGIPA 87
Query: 331 SGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
+ + KLVA GY+V +Q+ T + +++ R++ ++T T +
Sbjct: 88 HAAEPYIAKLVAAGYRVALCDQIGTPD------GRNLVERRITRILTRGTITE 134
Score = 44.7 bits (104), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T G RLLR W+ PL DV I R + V L++ + V + L + DLERL
Sbjct: 313 LDRTETPMGARLLRRWLSQPLLDVGAIRQRQERVAALVEETLVRARLGILLAGVADLERL 372
Query: 624 LGRV 627
RV
Sbjct: 373 ANRV 376
>gi|171910204|ref|ZP_02925674.1| DNA mismatch repair protein [Verrucomicrobium spinosum DSM 4136]
Length = 837
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/276 (41%), Positives = 161/276 (58%), Gaps = 26/276 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E AI+ +DVL S A TA + + RP +L +++N R D PVL F
Sbjct: 540 ETAEAIATLDVLASLAETARLFN--YTRP-VLNETRNLFFR-DGRHPVLDQNLAGEKF-- 593
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
VPND L E +++ R L++TGPNM GKST +R L ++AQ+G ++P
Sbjct: 594 -------VPNDTTL-EPAEN---RVLIITGPNMAGKSTYIRQVALLTLMAQIGSYLPVAS 642
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
+ L D IFTR+GA+D + G+STF+VE ETA +L AT SLVILDE+GRGTSTFDG
Sbjct: 643 AEVGLVDRIFTRIGASDDLSRGQSTFMVEMNETALILNNATDQSLVILDEIGRGTSTFDG 702
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
+IA++V L I R LFATHYH LT L H K+ + + + +
Sbjct: 703 LSIAWSVAEHLHNDIGSRTLFATHYHELT---------VLAHTCSGVKNYNVAVKEWNHQ 753
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
++FL ++ +G+ +SYG+QVA +AG+P+KV+ A H
Sbjct: 754 IIFLRKIIAGSAEKSYGIQVARLAGLPEKVLHRARH 789
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 159/378 (42%), Gaps = 64/378 (16%)
Query: 275 KQYWNVKSQY-MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI 333
KQY ++ + DVLL F++G FYE++ DA+ L+ +T ++ GI G+
Sbjct: 12 KQYLAMRRELPADVLLLFRLGDFYEMFFEDAKTAAGILNVALT-------KRNGIPMCGV 64
Query: 334 -DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDAV 391
A + +AR + GR ++ EQ ++ R++ +++ T DG +
Sbjct: 65 PHHAAQGYIARLIRAGR--RVAIGEQTADPVPGKLVPREVSEIISAGTVTDGRYLDASRA 122
Query: 392 HLLAI--KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
H LA +EG +G A+VD V + S AL L ++ P E++
Sbjct: 123 HYLAAIWREGKK--------FGLAYVDHTTGEFEVAEFD---SANALSDELTRIMPSELL 171
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ------LNGYFNGS 503
Y E Q L GS ++ FL V LVQ L+GY
Sbjct: 172 Y------AEEQSELLAEVGGSKGAQVCEGYL---FLHDQAVHSLVQHFKVQSLDGYGCTH 222
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY---------KVYRDC 554
+ A +MQ+ + F L +SH+ RL + +PY + + +
Sbjct: 223 LTAAISAAGAIMQY-LQFQ-LRKDVSHIKRLRV--------AVPYEGVWIDAASQSHLEL 272
Query: 555 LRMDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
+ G T + L+ T G R LR W+ HPL++++ + R D++ L++ ++
Sbjct: 273 VNSRGGTEHTLLHSLNRTCTPMGARKLRRWVLHPLRNLQQLIARQDLIAALLQEPMLLSQ 332
Query: 610 VAQYLRKLPDLERLLGRV 627
+ + DLER GR+
Sbjct: 333 SRDLFKDIRDLERTAGRL 350
>gi|260549540|ref|ZP_05823758.1| mismatch repair ATPase [Acinetobacter sp. RUH2624]
gi|424056166|ref|ZP_17793687.1| DNA mismatch repair protein mutS [Acinetobacter nosocomialis Ab22222]
gi|425739695|ref|ZP_18857891.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-487]
gi|260407333|gb|EEX00808.1| mismatch repair ATPase [Acinetobacter sp. RUH2624]
gi|407441612|gb|EKF48117.1| DNA mismatch repair protein mutS [Acinetobacter nosocomialis Ab22222]
gi|425496089|gb|EKU62231.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-487]
Length = 881
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 176/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DAQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +RI C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRIKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E + + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSTQVIEKV 842
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
++ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDQNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC T+ G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-------------QTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|257094871|ref|YP_003168512.1| DNA mismatch repair protein MutS [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047395|gb|ACV36583.1| DNA mismatch repair protein MutS [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 848
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 168/313 (53%), Gaps = 41/313 (13%)
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
Q + HA++ +D+L FA +A + + RPL + P L I+G HP
Sbjct: 530 QLQTIAHAVASLDLLAGFAESARLRNYC--RPLF------------SSEPGLLIEGGRHP 575
Query: 800 FALGE--NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
G+ G + N+ L ++ R LL+TGPNMGGKST +R T L +LA +G +
Sbjct: 576 VVEGQLAGGETFIANETRLTDER-----RLLLITGPNMGGKSTYMRQTALIALLAHVGSY 630
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP VL D IFTR+GA D + G STF+VE TE+A++L AT+ SLV++DE+GRGT
Sbjct: 631 VPATRAVLGPLDQIFTRIGAADDLAGGRSTFMVEMTESAAILHHATERSLVLMDEVGRGT 690
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
STFDG A+A+A+ R L+E+ C LFATHY LT + + H+ +
Sbjct: 691 STFDGMALAFAICRHLIEKNRCLTLFATHYFELTLLANEYGELANVHL---------DAV 741
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQR 1037
+ Q +VFL+ + G +SYG+QVA +AG+P VV AA + EQR
Sbjct: 742 EHGQRIVFLHAVEEGPANQSYGIQVAALAGIPSPVVRAAR-----------RQLREFEQR 790
Query: 1038 SEFSSLHEEWLKT 1050
+ + L + T
Sbjct: 791 ASINPLQPDLFAT 803
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 157/374 (41%), Gaps = 53/374 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG--VGK-CRQVGISES 331
+QY +K+Q+ D+LLF+++G FYEL+ DAE + LD +T G G+ + G+
Sbjct: 3 QQYLRIKAQHPDLLLFYRMGDFYELFFDDAEKASRLLDITLTTRGQSAGQPIKMAGVPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDA- 390
++ + KLV G V EQ+ +K + R + +VTP T D + +
Sbjct: 63 AVEQYLAKLVRLGESVVICEQIGDPATSK-----GPVERAVARIVTPGTLTDAALLDEKR 117
Query: 391 -VHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
LLA+ + G A+++ A+ RV + + L A L ++ P E
Sbjct: 118 DTLLLALSVTRQ-------LAGLAWINLASGDFRVC------EVAPGKLAATLERIRPAE 164
Query: 448 VIYENR---GLCKEAQKALR---KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+I +A A R F + +A EL + L G+
Sbjct: 165 IIVPESLVPSFAPDAVLARRPDWHFDSETAQRELCAHFGTSS------------LAGFGT 212
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLML--DDVLRNGDILPYKVYRDCLRMDG 559
P A ++++ A + HL L++ D D + + G
Sbjct: 213 DGLRPAIAAAGALLRYAQATQARA--LPHLQALIVERDATFLGMDTATRRNLELTETLRG 270
Query: 560 Q---TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV-VAQY 613
Q TLY LD+C T+ G RLLR + HP +D + R + L+ + + + Q
Sbjct: 271 QPAPTLYSLLDNCSTAMGSRLLRHALHHPWRDPAIPSARHAAIAMLLDDGGCTLRELRQS 330
Query: 614 LRKLPDLERLLGRV 627
LR L D+ER+ GR+
Sbjct: 331 LRGLADIERIAGRI 344
>gi|328493202|gb|AEB20401.1| msh6 [Schmidtea mediterranea]
Length = 1174
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 172/305 (56%), Gaps = 27/305 (8%)
Query: 727 LSILIELFIEKASQWSEVIHAISCIDVLRSF-AVTASMSSGAMHRPLILPQSKNPAVRQD 785
+S + F E QW++VI++I+ D L S + + + G M RP +R
Sbjct: 859 MSKIFAKFDEHYFQWTQVINSIAQFDALLSLTSFSRGLDGGPMTRP---------EIRHI 909
Query: 786 NGG--PVLKIKGLWHPFALGENGGLPVPNDILLGE---DSDDCLPR-TLLLTGPNMGGKS 839
N G P L I P G + N I LG +S+ L +LLTGPNMGGKS
Sbjct: 910 NPGDKPFLIITEGRFPCKAKTQSGEFISNTIKLGSLLMNSNRNLDNPVMLLTGPNMGGKS 969
Query: 840 TLLRATCLAVILAQLGCFVPCE-MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
TL+R T L +IL+QLGC+VP E +L+ D +FTR GA D I +G+ST VE E A +
Sbjct: 970 TLMRQTALIIILSQLGCYVPAEGPVILTPVDRLFTRQGANDSIGSGQSTLQVEMNEAALI 1029
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L + S +++DELGRGT+T+DG A+A+++ +++ + + R +F+TH+H L +E
Sbjct: 1030 LSYMSPHSFLLIDELGRGTATYDGCALAFSILKRIADSCSPRTIFSTHFHKLLEEKEIGD 1089
Query: 959 HVTLQHMACAFKSNSENYSKGD----------QELVFLYRLTSGACPESYGLQVAVMAGV 1008
++ + HMAC + ++++ + Q + FLY+LT G CP+SYG A +A +
Sbjct: 1090 NLQISHMACMIEDDNDDDVGNNECHLDNNLKLQNITFLYKLTHGGCPKSYGFNAARLANI 1149
Query: 1009 PQKVV 1013
P++++
Sbjct: 1150 PEQII 1154
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/483 (25%), Positives = 201/483 (41%), Gaps = 102/483 (21%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEAL-----KKMSASQKQYWNVKSQ-YMDV 287
+E+L IRDA RR+PD P YD TL+IP + K++ KQ+W +K+ M+
Sbjct: 180 YEFLKKENIRDAQRRKPDHPDYDPTTLFIPESFMMSLIQSKLTPGLKQWWKIKANGNMET 239
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347
+ FFKVGKFYELY +DA EL G G E ++L G+KV
Sbjct: 240 IFFFKVGKFYELYHMDAVTAVSELGLTYMR---GNYAHSGFPEIAFSKMADQL---GFKV 293
Query: 348 GRIEQLETSEQAKAR-----HTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCG 402
R+EQ ET E R N V++R++ V+TP GT G + + G G
Sbjct: 294 ARVEQTETVEAMTERIKHESSKNKVVNREICQVITP-----GTRGFSLRNRTCRETGQEG 348
Query: 403 P-------DNGSVVYGF--AFVDCAALRVWVGTIN----------DDASCAALGALLMQV 443
D G ++Y F + ++ T+N DD + L+ +
Sbjct: 349 SEELGYIEDAGGLLYSFKESLIEENVKGKLKNTVNIGVALIAQFADDDQRSRFRTLISRF 408
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGS------------AALELTPAMAVTDFLDASEVK 491
P E+IY L K Q A + ++ + + +D+ +
Sbjct: 409 QPNEIIYLKGNLSKNTQHVFNSCLAATKKECFTNNKQFLSSEDTLSRLMSSDYFAEAPAN 468
Query: 492 KLVQLNGYFNGSSSPWSKALENV-----MQHDIGFSALGGLISHLSRLMLDDVL------ 540
KL + G NG + ++A +N+ ++++ S LG L+ +L + ++D L
Sbjct: 469 KLSRF-GLPNGLTKTLNEA-DNLGRSSSKEYELAVSCLGALLYYLGKCLIDKYLVSIADF 526
Query: 541 -----RNGDIL-----------PYKVYRDCLRMDGQTL--------------------YL 564
+GD + P+ ++ + +D TL L
Sbjct: 527 NLYYPSDGDCIQPHQLAIDDKEPFYTHQSHMIIDSNTLTNLDLLKNSSLGGIDGTLLERL 586
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
D +T+ G+RLL WI PL D + I R ++ L++ + + L+ PDLE+L+
Sbjct: 587 DFSLTAFGRRLLIQWIATPLCDPDKIIERQKAIKELIELDANLSNIKNNLKSCPDLEKLV 646
Query: 625 GRV 627
++
Sbjct: 647 AKI 649
>gi|71907966|ref|YP_285553.1| DNA mismatch repair protein MutS [Dechloromonas aromatica RCB]
gi|90109845|sp|Q47DJ8.1|MUTS_DECAR RecName: Full=DNA mismatch repair protein MutS
gi|71847587|gb|AAZ47083.1| DNA mismatch repair protein MutS [Dechloromonas aromatica RCB]
Length = 860
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 141/229 (61%), Gaps = 17/229 (7%)
Query: 791 LKIKGLWHPFALGE---NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L I G HP GE + ND LL E+ R LL+TGPNMGGKST +R L
Sbjct: 581 LSITGGRHPVVEGELTNQAETFIANDCLLAENR-----RLLLITGPNMGGKSTYMRQVAL 635
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+LA +GC+VP + CVL D IFTR+GA+D + +G STF+VE TE A++L AT SL
Sbjct: 636 IALLAHIGCYVPADRCVLGPLDRIFTRIGASDDLASGRSTFMVEMTEAAAILHHATNQSL 695
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V++DE+GRGTSTFDG A+A+A+ R L+E+ LFATHY LT+ SH + L ++
Sbjct: 696 VLMDEIGRGTSTFDGMALAFAILRHLIEKNQSLTLFATHYFELTR--LSHEYSELANVHL 753
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++ +VF++ + G +SYG+QVA +AG+P VV AA
Sbjct: 754 GAVEHNDR-------IVFMHAVEEGPANQSYGIQVAALAGIPTAVVRAA 795
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 166/398 (41%), Gaps = 79/398 (19%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L K + +QY +K+ + + LLF+++G FYEL+ DAE + LD ITL+ G+ V
Sbjct: 9 LSKHTPMMRQYLALKANHPNTLLFYRMGDFYELFHEDAEKAARLLD--ITLTTRGQSAGV 66
Query: 327 GISESGID-DAVEKLVARGYKVGRIEQLETSEQAKARHTN-SVISRKLVNVVTPSTTVDG 384
I GI ++E +AR K+G E EQ T+ + R + +VTP T D
Sbjct: 67 PIKMCGIPFHSLEPYLARLVKLG--ESAVICEQIGDPATSKGPVERAVARIVTPGTLTDA 124
Query: 385 TIGPDA--VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
+ D + LLA+ G A ++ A+ I + + A L +
Sbjct: 125 ALIDDKQDLWLLAVTTHRN-------TAGIARLNLASGEF----ILIEVPTEQIPATLER 173
Query: 443 VSPKEVIY--------------------------ENRGLCKEAQKA-LRKFSAGSAALEL 475
+ P E++Y R LC + + A L F A +
Sbjct: 174 IRPAEILYPESWTPNFGVDVARTRQPDWYFEFDSARRLLCDQFEVASLAGFGAEGLKPAI 233
Query: 476 TPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLM 535
A A+ + A++ KL L G + +I + LG ++ L
Sbjct: 234 AAAGALLQYAQATQSGKLPHLRG----------------LTVEIEGAYLGLDLATRRNLE 277
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
L + LR G P TL+ LD+CVTS G RLLR + HPL+ + R
Sbjct: 278 LTETLR-GQPSP-------------TLFSLLDNCVTSMGSRLLRHTLHHPLRARDIPAAR 323
Query: 594 LDVVEYLMKN-SEVVMVVAQYLRKLPDLERLLGRVKAR 630
VE L+++ + V + LR + D+ER+ GRV R
Sbjct: 324 HGAVEALLEDYGRLGNEVRKALRGIADIERIAGRVALR 361
>gi|375091619|ref|ZP_09737908.1| DNA mismatch repair protein MutS [Helcococcus kunzii ATCC 51366]
gi|374563141|gb|EHR34463.1| DNA mismatch repair protein MutS [Helcococcus kunzii ATCC 51366]
Length = 869
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 190/334 (56%), Gaps = 38/334 (11%)
Query: 717 HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
++ DL+ + + + E +++ E I+ ID L SFA A ++ RP+
Sbjct: 526 NETMDLEYQLFNEIRETVAHNSTRIKESTDIIATIDALNSFARVALKNNYC--RPIF--- 580
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTL-LLTG 832
N + I HP + EN + ND L+G + +T+ ++TG
Sbjct: 581 ---------NSENYISISKGRHPVVEQTMDENQF--IANDTLIGRKN-----KTIQIITG 624
Query: 833 PNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVEC 892
PNM GKST +R L V+++Q+G +VP + C +S++D IFTR+GA+D + G+STF+VE
Sbjct: 625 PNMAGKSTYMRQVALIVLMSQIGSYVPADSCDISISDAIFTRIGASDNLAKGDSTFMVEM 684
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952
E +++++ AT++S VILDE+GRGTST+DGY+IA ++ + + INC+ LFATHYH LT
Sbjct: 685 KEMSNIIKNATENSFVILDEVGRGTSTYDGYSIAKSIIEYISKNINCKTLFATHYHELTD 744
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
S +V +++ E Y + D +VFL ++ G SYG++VA ++G+P ++
Sbjct: 745 LEDSMENV--ENLKV------EIYEEKDN-IVFLRKIVRGKTDRSYGIEVAKLSGLPDEI 795
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
+ A+ ++ K+I E K + F+S++E+
Sbjct: 796 LFRANVILSSLDKNILEENK----QLSFASVNED 825
Score = 110 bits (275), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 99/387 (25%), Positives = 178/387 (45%), Gaps = 55/387 (14%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ K++ +QY +K Q MD +LF+++G FYE++ DA+I KEL+ +T G K
Sbjct: 6 INKLTPMMQQYMKIKQQNMDKILFYRLGDFYEMFFDDAKIASKELELVLTGRECGLDEKA 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI + + +LV++GYKV +EQ+E QAK ++ R +V +++P +D
Sbjct: 66 PMCGIPHHSANSYINRLVSKGYKVAIVEQVEDPSQAKG-----IVKRSVVKIISPGMQID 120
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAA-LGALLM 441
D LL+I D S G +++D + I + + + +
Sbjct: 121 LDGKNADNNFLLSIY-----IDKNST--GISYIDISTGEFNTTEILNSTNIERDILDFIS 173
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+VSPKE++ N+ K + + + L L ++ + +K+ ++ FN
Sbjct: 174 KVSPKEIVTNNKIELKGLNNHIEQ---NNIYLTLIDEKYNDIKIERNNIKRKIR---RFN 227
Query: 502 GSSSPWSKALENVMQHDIGFSAL-GGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ 560
S + D FS L ++ L +++ L + D L Y + +++D
Sbjct: 228 NS-----------IFKDKYFSILSSSILLDYVYLFVENDLNHIDELKYIENNNFVKIDAS 276
Query: 561 T---------LY-----------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
T LY LD+ T G R + SW+ PL D IN RL+ V++L
Sbjct: 277 TRQNLEIHKNLYDNTKTNTLLNVLDNANTPMGSRKINSWLEFPLLDKNKINERLECVDFL 336
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
++N+++ ++ L ++ DLER+L +V
Sbjct: 337 VQNTDLSSQISDILDEIYDLERILSKV 363
>gi|381150658|ref|ZP_09862527.1| DNA mismatch repair protein MutS [Methylomicrobium album BG8]
gi|380882630|gb|EIC28507.1| DNA mismatch repair protein MutS [Methylomicrobium album BG8]
Length = 861
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 169/294 (57%), Gaps = 35/294 (11%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
A++ +DVL +FA A + + RP++ P ++I+ HP + + G
Sbjct: 557 ALAELDVLVNFAERAETLN--LSRPML------------QAEPGIRIEAGRHP-VVEQVG 601
Query: 807 GLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
G+P VPND+ L +S R L++TGPNMGGKST +R L V++A +GCFVP + VL
Sbjct: 602 GVPFVPNDLNLAGES-----RMLVITGPNMGGKSTYMRQAALIVLIAHVGCFVPAKSAVL 656
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
D IFTR+GA+D + +G STF+VE +ETA++L AT SL+++DE+GRGTSTFDG ++
Sbjct: 657 GPVDKIFTRIGASDDLASGRSTFMVEMSETANILHNATAQSLILMDEIGRGTSTFDGLSL 716
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+A L LFATHY LT P + H+ E GD+ +VF
Sbjct: 717 AWACADHLARVTQAFTLFATHYFELTTLAEERPSIRNVHL--------EAMEHGDR-IVF 767
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSE 1039
L+ + G +SYGLQVA +AGVP+ V+E A K + E+ EQR+E
Sbjct: 768 LHAVKDGPANQSYGLQVAALAGVPRAVIEKAK-----TKLAHLENNAYIEQRAE 816
Score = 79.0 bits (193), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/408 (25%), Positives = 176/408 (43%), Gaps = 60/408 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
K+ + +QY +KS Y + LLF+++G FYEL+ DA+ + LD ITL+ G+ + +
Sbjct: 15 KEHTPMMQQYLRIKSDYPETLLFYRMGDFYELFYDDAKKAARLLD--ITLTARGQSQGLP 72
Query: 328 ISESGID-DAVEKLVARGYKVGRIEQLETSEQ-AKARHTNSVISRKLVNVVTPSTTVDGT 385
I +GI A E +A+ ++G E + EQ + + RK+V ++TP T D
Sbjct: 73 IPMAGIPYHAAEGYIAKLIRIG--ESVAICEQIGDPAASKGPVERKVVRIITPGTVTDEA 130
Query: 386 IGPDAVHLLAIK----EGNCGPDNGSVVYGFAFVDCAALR-VWVGTINDDASCAALGALL 440
+ D L + +G YG A +D + R V ++D +G L
Sbjct: 131 LLEDRKDNLLVALCQLQGR---------YGIASLDLTSGRFVLQEAESEDQLLGEVGRL- 180
Query: 441 MQVSPKEVIY-----------ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASE 489
+P E++Y + GLC+ + F A SA L + D L
Sbjct: 181 ---NPAELLYSESWPLPDNLKQRSGLCR---RPPWHFEAESARLLVLKQFKAHD-LKGFG 233
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLS--RLMLD-DVLRNGDIL 546
+ + G +NV+ H + G+ + S + LD RN +I
Sbjct: 234 CEAMPAAVAAAGGLLQYVRDTQQNVLPH------IQGIRTETSDDSIQLDASSRRNLEID 287
Query: 547 PYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
+ + + G LD T+ G R LR W+ PL+D +N R +E L+++ +
Sbjct: 288 THPSGQLQFTLLG---VLDKTATAMGSRCLRRWLNRPLRDHFVLNRRYACIETLLQDG-L 343
Query: 607 VMVVAQYLRKLPDLERLLGRVKAR--------VQASSCIVLPLIGKKV 646
+ LR++ D+ER+ R+ + V S+ LP++ K++
Sbjct: 344 YRALQDTLRQVGDIERISTRIALKSARPRDLLVLRSTLAALPVLQKRL 391
>gi|260558367|ref|ZP_05830563.1| MutS [Enterococcus faecium C68]
gi|35367191|gb|AAN85564.1| MutS [Enterococcus faecium]
gi|260075541|gb|EEW63847.1| MutS [Enterococcus faecium C68]
Length = 881
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V+LAQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLLAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV + I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNINGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|385840668|ref|YP_005863992.1| DNA mismatch repair protein mutS [Lactobacillus salivarius CECT 5713]
gi|300214789|gb|ADJ79205.1| DNA mismatch repair protein mutS [Lactobacillus salivarius CECT 5713]
Length = 876
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 169/305 (55%), Gaps = 28/305 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E+ A++ +DVL+SFA + G +P + + + L IK WHP
Sbjct: 537 ELAGAVAALDVLQSFATVSE--QGHFVKPELTTNNHS-----------LDIKDGWHPVVE 583
Query: 803 GENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
G +PNDI + +D D LL+TGPNM GKST +R L V++AQ+GCFVP +
Sbjct: 584 KVMGKQSYIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVIAQIGCFVPAK 638
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+ + D IFTR+GA D +++GESTF+VE ET L AT++SL++ DE+GRGT+T+D
Sbjct: 639 SAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFDEIGRGTATYD 698
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + I+ + LF+THYH LT S + H+ K+
Sbjct: 699 GMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKNG--------- 749
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
EL+FL+++ G +SYG+ VA +AG+P K+++ A ++ + S+E +E
Sbjct: 750 ELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVDSTESYAEEK 809
Query: 1042 SLHEE 1046
+ E+
Sbjct: 810 HIEEK 814
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 168/370 (45%), Gaps = 40/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T V
Sbjct: 6 KQTPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E +QAK ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVDKGYKVAICEQVEDPKQAKG-----MVKREVIQLVTPGTIIDES 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + +L A+ N YGFA+VD + + V +N + + L+ +
Sbjct: 121 AGEAKENNYLTALHFENNQ-------YGFAYVDLSTGELKVSVLN---TIDTILNELISL 170
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTP-----AMAVTDFLDASEVKKLVQLNG 498
KE++ ++ + E ++ + T + A D ++ EV+ + L
Sbjct: 171 RTKEIVVDS-SVNDEVLNQIKNLKILISEQNDTEDSSEVSFASQDVENSVEVEVIKHLIT 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ + ++ S + H R + ++LRN +
Sbjct: 230 YLKITQKRALSHLQRAVHYEP--SQYLKMDYHAKRNL--ELLRN---------LRTQKKS 276
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+ LDS T+ G RLL+ WI PL +++ I R +VE L+ + + + L +
Sbjct: 277 GTLLWLLDSTKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNV 336
Query: 618 PDLERLLGRV 627
DLERL G+V
Sbjct: 337 YDLERLAGKV 346
>gi|449543819|gb|EMD34794.1| hypothetical protein CERSUDRAFT_125339 [Ceriporiopsis subvermispora
B]
Length = 971
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 193/344 (56%), Gaps = 24/344 (6%)
Query: 715 QNHDVTDLDAETLSILIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHR 770
Q + TD + T S L++ + AS ++ V+ A I+ +DV+ S A A + A +
Sbjct: 591 QYQETTDAYSRTQSGLVKEVVNIASTYTPVLEAWNGVIAHLDVIISLAHVAVNAPEAYVK 650
Query: 771 PLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLL 830
P +L + G L +K HP ++ +PND+ + +D + ++
Sbjct: 651 PTLL----------EKGSGSLILKEARHPCLEVQDDLSFIPNDVEMIKDESEFQ----II 696
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNMGGKST +R + ++AQ G FVPC + + D+I R+GA D + G STF+
Sbjct: 697 TGPNMGGKSTYIRQVGVIALMAQAGSFVPCSEARVPVFDSILCRVGAGDSQLKGISTFMA 756
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E ETA++L+ A++DSL+I+DELGRGTST+DG+ +A+A+ + +I+ LFATH+H L
Sbjct: 757 EMLETATILRSASKDSLIIIDELGRGTSTYDGFGLAWAISEHIASQIHAFCLFATHFHEL 816
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
T PHV H+ A SNS+ ++ D+E+ LY++ G C +S+G+ VA +A P+
Sbjct: 817 TALDQEVPHVKNLHV-VAHVSNSDEAAR-DREITLLYKVEPGICDQSFGIHVAELANFPE 874
Query: 1011 KVVEAASHAALAMK----KSIGESFKSSEQRSEFSSLHEEWLKT 1050
VV+ A A ++ + G++ E E + L EE+L+T
Sbjct: 875 NVVKLAKRKADELEDFNTEHNGDAELPPEVVEEGTQLVEEFLRT 918
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 42/222 (18%)
Query: 522 SALGGLISHLSRLMLDDV------LRNGDILPY-KVYRDCLRM-------------DGQT 561
SAL LIS+LS LM D +R D+ + K+ LR T
Sbjct: 292 SALSALISYLS-LMSDPTNHGAYTIRTHDLSQFMKLDASALRALNLTEAPGNIGSNKNTT 350
Query: 562 LY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLP 618
L+ L+ C T+ G RLL +W+ PL ++ I R ++VE + +S + +LR +P
Sbjct: 351 LFGLLNKCKTAQGSRLLAAWLKQPLVNLHEIRKRQNLVELFVTDSNARRTLQDDFLRMMP 410
Query: 619 DLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGH 676
D+ R+ R + + L+ V+V+ +++K GL ++D L ++ H
Sbjct: 411 DMHRICKRFQKSAAS-------------LEDVVRVYQAVLKLEGLISSLDGLETTDQD-H 456
Query: 677 IIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+ + ++ + + L K+ E +D D + +NH+
Sbjct: 457 LKALIDEMYLTKLREYETSLSKYAEMVEQTLDLD--ELENHN 496
>gi|331001789|ref|ZP_08325311.1| DNA mismatch repair protein MutS [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330412763|gb|EGG92146.1| DNA mismatch repair protein MutS [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 882
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 208/384 (54%), Gaps = 60/384 (15%)
Query: 728 SILIELFIEKASQWSEVIH-------AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
S+ E+F+E + + ++ +I+ ID + S A A ++ A RP I
Sbjct: 525 SLEYEIFVEVREEIANNVNRIQSSAKSIAYIDAICSLATVAYNNNYA--RPEI------- 575
Query: 781 AVRQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
N ++ IK HP + ++ V ND L ++ R ++TGPNM GK
Sbjct: 576 -----NTTGIIDIKDGRHPVVETMLKDDSFIV-NDTYLDQNK----KRMSIITGPNMAGK 625
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R T L ++AQ+G FVP + L + D IFTR+GA+D + +G+STF+VE TE A++
Sbjct: 626 STYMRQTALICMMAQIGSFVPAKKASLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANI 685
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFAS 956
L+ AT++SLVILDE+GRGTSTFDG AIA+AV + V+ I + LFATHYH L++ +
Sbjct: 686 LRNATRNSLVILDEIGRGTSTFDGLAIAWAVVEHISNVKLIGAKTLFATHYHELSELEGT 745
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV---- 1012
P V + + K N +N +VFL ++ +G +SYG+QVA +AGVP+ V
Sbjct: 746 LPGV--NNYCISVKENGDN-------IVFLRKIITGGADKSYGIQVAKLAGVPESVTNRA 796
Query: 1013 ---VEAASHAALAMK-KSIGESFKSSEQRSEFSSLHE------EWLKTIVNVSRVDCNSD 1062
+E S A +A K + I E+ ++ +R ++E + N + + SD
Sbjct: 797 KELIEELSGADIATKAREIAEATPTASKRKPVKKMNEVEAGQLSLFDAVNNDTIIKEISD 856
Query: 1063 DD-------DAYDTLFCLWHELKN 1079
D DA +TL+ L +++KN
Sbjct: 857 IDITTMTPMDALNTLYALQNKIKN 880
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 157/392 (40%), Gaps = 70/392 (17%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
+S +Y K+++ D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 3 LSPMMSKYLETKNEHPDCILFYRLGDFYEMFFDDAIEVARELELTLTGKDCGLKERAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGT 385
G+ + + +LV G+KV EQ+E + AK ++ R++V +VTP T T G
Sbjct: 63 GVPYHAAETYINRLVQNGHKVAIAEQMEDPKLAKG-----LVKREVVRIVTPGTITSTGV 117
Query: 386 IGPD----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ D + + I E +G A D + +V + S L +
Sbjct: 118 LADDRNNYIISIFYIDER----------FGLAICDISTGDFFVTEL---VSIRELFDEIQ 164
Query: 442 QVSPKEVI----YENRGLCKEAQKALRKFSAGSA------------------ALELTPAM 479
+ P E+I +E G+ + + + S A+ A+
Sbjct: 165 KYQPTEIICNHAFEISGISLDELRKKYNITITSLDNSYFNEKAGIDILKRHFAVSSIEAL 224
Query: 480 AVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHD----IGFSALGGLISHLSRLM 535
+++FLDA+ SS + L + + +G SA M
Sbjct: 225 GLSEFLDAT-------------ISSGAMLRYLHEMQKSSCAQIVGISAYKN-----GDYM 266
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
+ D ++ + R+ + LD T+ G R+LRS++ PL + E I R D
Sbjct: 267 IVDTASRRNLELVETMREKKKSGSLLGVLDKTNTAMGARMLRSFLEQPLVNREKIIGRQD 326
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
V L + +YL + DLERL+ RV
Sbjct: 327 AVAELFDRYIDREELREYLNPVYDLERLMSRV 358
>gi|298528739|ref|ZP_07016143.1| DNA mismatch repair protein MutS [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512391|gb|EFI36293.1| DNA mismatch repair protein MutS [Desulfonatronospira thiodismutans
ASO3-1]
Length = 877
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 158/261 (60%), Gaps = 21/261 (8%)
Query: 780 PAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGG 837
P + +D G ++IK HP A+ G VPND+ L + + R LL+TGPNM G
Sbjct: 563 PVLSKDIG---MQIKKGRHPAIEAIQGRSGY-VPNDMYLEDPT-----RILLITGPNMAG 613
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KST+LR T + ILAQ+G FVP + L D IF+R+GA+D + G+STF+VE TETA
Sbjct: 614 KSTVLRQTAIIAILAQMGSFVPAREASIGLCDRIFSRVGASDNLAQGQSTFMVEMTETAR 673
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN-CRLLFATHYHPLTKEFAS 956
+L++AT+ SLVILDE+GRGTST+DG A+A+AV +L + R LFATHYH LTK
Sbjct: 674 ILRQATRRSLVILDEIGRGTSTYDGLALAWAVVEELARKHEGIRTLFATHYHELTK---- 729
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
L+ K+ + + +E+VFL RL G +SYG++VA +AGVP +VV+ A
Sbjct: 730 -----LEQEFSVLKNYNIAVKEWKKEIVFLRRLVPGPADKSYGIEVARLAGVPDRVVDRA 784
Query: 1017 SHAALAMKKSIGESFKSSEQR 1037
+ +++ EQR
Sbjct: 785 RNILEDLERQKERKSVVREQR 805
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 164/375 (43%), Gaps = 56/375 (14%)
Query: 279 NVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG-----KCRQVGISESGI 333
+K Y D LLFF++G FYEL+ DAE +EL +ITL+ K G+
Sbjct: 2 QIKQDYPDCLLFFRMGDFYELFFEDAETAAREL--QITLTARNPNAELKVPMCGVPYHAC 59
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVH 392
++ + +L+ +G+KV +Q+E AK ++ R++ V+TP T V D ++ +
Sbjct: 60 EEYLRQLLEKGHKVAVCDQVEDPGAAKG-----LVKREVTRVLTPGTVVEDSSLEARENN 114
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVG--TINDDASCAALGALLMQVSPKEVI- 449
L G D G A+ + + W G N+D L L +++P E++
Sbjct: 115 YL----GALFWDTSRGRGGLAWAEFSTGE-WTGLELKNED----ELWQWLQKINPSEILV 165
Query: 450 ---YENRGLCKEAQKALRKFSAGS-----AALE--LTPAMAVT-DFLDASEVKKLVQLNG 498
YE Q + AGS +A E L AV+ LD + LV+ G
Sbjct: 166 AQGYEPPRAHVGLQPRINFVPAGSYFEPRSAREMILRSQQAVSLQVLDLEDKPCLVRACG 225
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLIS-HLSR-LMLDDV-LRNGDILPYKVYRDC- 554
+ V H + L +L+R L LD+V +RN +++R
Sbjct: 226 AI---------LMYMVQTHKKELTHLASFKPMNLTRYLYLDEVTIRN-----LELFRTLG 271
Query: 555 -LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
+ G L+ LD +T G R L++ + P K+ IN+ V+ L K++ + ++
Sbjct: 272 GQKGPGTLLHVLDRTLTPMGARYLQTRLRQPWKEPGPINDNQQTVDCLYKDNNLRELLRL 331
Query: 613 YLRKLPDLERLLGRV 627
L + DLERL R+
Sbjct: 332 ELDQAYDLERLNTRI 346
>gi|442771149|gb|AGC71844.1| DNA mismatch repair protein MutS [uncultured bacterium A1Q1_fos_1877]
Length = 815
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 146/237 (61%), Gaps = 20/237 (8%)
Query: 789 PVLKIKGLWHPFALGENGGLP----VPNDILLG----EDSDDCLPRTLLLTGPNMGGKST 840
P++ I+ HP + LP VPND+ LG ED + R ++TGPNM GKST
Sbjct: 517 PIMDIRDGRHPVL---DRLLPAGQFVPNDVKLGLPCPEDDKRAIGRVQIITGPNMAGKST 573
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R L I+AQ+G FVP + ++ +AD +F R+GA+D + G+STF+VE TETA +L
Sbjct: 574 YIRQAALITIMAQMGSFVPAKSAMIGIADRVFARVGASDELARGQSTFMVEMTETARILN 633
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT SLVILDE+GRGTST+DG ++A+A+ L + I CR +FATHYH LT + H
Sbjct: 634 SATSRSLVILDEIGRGTSTYDGISLAWAITEHLHDEIACRTMFATHYHELTDLTTTLKHA 693
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
++A + ++++VFL+R+ GA SYG+ VA +AGVP+ V + A+
Sbjct: 694 ANWNVAV---------QESNEDVVFLHRIVEGAAGRSYGIHVAKIAGVPRLVTDRAA 741
Score = 63.2 bits (152), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 138/322 (42%), Gaps = 49/322 (15%)
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGT 385
G +D ++KL+ G++ +Q+E ++AK ++ R++ VVTP T T D
Sbjct: 3 GFPYHQLDGYLQKLIQAGFRAAICDQVEDPKKAKG-----LVRREVTRVVTPGTLTDDQM 57
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+ P + LA C + +++ G A+++ + R + D + L L ++ P
Sbjct: 58 LDPRQSNFLA-----CVAPSKNMI-GLAWLEVSTGRFLLT----DLEPSQLQDELARIRP 107
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E + ++ Q +R+ S + P D+ A E K + LN +F
Sbjct: 108 AECLIPESA-AQDGQLPMRRPDPSSPVMTTRP-----DWCFAREEAKRL-LNEHFG---- 156
Query: 506 PWSKALENVMQHDI-GFSALGGLISHL---SRLMLDDVLR------NGDILPYKVYRDCL 555
+K LE D +A G L+ ++ R L ++R + ++ + R L
Sbjct: 157 --TKTLEGFDVEDTPAVTAAGALLEYVRETQRTALPHIVRMEVWRRSRHMIIDEATRRSL 214
Query: 556 RM-----DGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
+ DG+ Y LD T G RLL W+ PL D E I R D +E ++
Sbjct: 215 ELAQTLRDGRRDYTLLGILDETCTPMGSRLLAEWLSSPLTDPEQITQRQDAIEEFLQQLS 274
Query: 606 VVMVVAQYLRKLPDLERLLGRV 627
+ V + L++ DL+RL R+
Sbjct: 275 LRDDVRELLKQTYDLQRLTSRI 296
>gi|430826358|ref|ZP_19444543.1| DNA mismatch repair protein mutS [Enterococcus faecium E0164]
gi|430839373|ref|ZP_19457314.1| DNA mismatch repair protein mutS [Enterococcus faecium E0688]
gi|430858934|ref|ZP_19476552.1| DNA mismatch repair protein mutS [Enterococcus faecium E1552]
gi|430892898|ref|ZP_19484519.1| DNA mismatch repair protein mutS [Enterococcus faecium E1575]
gi|431764986|ref|ZP_19553511.1| DNA mismatch repair protein mutS [Enterococcus faecium E4215]
gi|35367182|gb|AAN85562.1| MutS [Enterococcus faecium]
gi|430445147|gb|ELA54926.1| DNA mismatch repair protein mutS [Enterococcus faecium E0164]
gi|430490831|gb|ELA67327.1| DNA mismatch repair protein mutS [Enterococcus faecium E0688]
gi|430544453|gb|ELA84482.1| DNA mismatch repair protein mutS [Enterococcus faecium E1552]
gi|430555364|gb|ELA94902.1| DNA mismatch repair protein mutS [Enterococcus faecium E1575]
gi|430629626|gb|ELB66021.1| DNA mismatch repair protein mutS [Enterococcus faecium E4215]
Length = 881
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V+LAQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLLAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|330934360|ref|XP_003304515.1| hypothetical protein PTT_17141 [Pyrenophora teres f. teres 0-1]
gi|311318822|gb|EFQ87396.1| hypothetical protein PTT_17141 [Pyrenophora teres f. teres 0-1]
Length = 1134
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 144/240 (60%), Gaps = 15/240 (6%)
Query: 791 LKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L I G HP L +N VPND+ L DS R LL+TGPNMGGKS+ +R+T L
Sbjct: 873 LNITGGRHPMVEQILLDNY---VPNDVSLSHDS----TRALLITGPNMGGKSSYVRSTAL 925
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
I+ Q+G +VP L + D +FTR+GA D ++ GESTF+VE ET+ +L+ AT SL
Sbjct: 926 IAIMGQIGSYVPATDARLGMLDAVFTRMGAFDNMLKGESTFMVELNETSDILKSATPRSL 985
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
+ILDELGRGTSTFDG AIA AV ++ + LF THY L K P L+++
Sbjct: 986 IILDELGRGTSTFDGVAIAEAVLDYVIRDLQSLTLFITHYQHLAKLTTRFPAGELKNVHM 1045
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
F+ + G +E+VFLY T G SYGL VA +A VP+KV++ A + +++S+
Sbjct: 1046 RFEEQN-----GGKEVVFLYEATEGISHRSYGLNVARLARVPEKVIDVAEVKSAELEESM 1100
Score = 68.2 bits (165), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 169/426 (39%), Gaps = 76/426 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + QY ++K +++D ++ +VG Y+ + DA KEL D +
Sbjct: 226 KLTPMEMQYLDIKRKHLDTVVIMEVGYKYKFFGEDARTASKELGIVCIPGKFRYDEHPSE 285
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + + V++LV +KVG + Q+ET+ +A + N+ RKL N+
Sbjct: 286 AHLDRFASASFPTHRLQVHVKRLVQANHKVGVVRQVETAALKAAGTNRNTPFVRKLTNLY 345
Query: 377 TPSTTVDGTIG---PDA---------VHLLAIKEGNC---GPDNGSVVYGFAFVDCAALR 421
T T VD G P A +LL I E N G D V G V A
Sbjct: 346 TKGTYVDDIEGLETPTAGSGAGAQSTGYLLCITESNAKGWGTDE-KVQVGLVAVQPATGD 404
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA---------- 471
+ D + + L+ ++P E + L K +K ++ SA
Sbjct: 405 IIYDDFEDGFLRSEIETRLLHIAPAEFLVVGH-LSKATEKLIQHLSASKTNVFGDRSRVE 463
Query: 472 ALELTPAMA------VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS-AL 524
+E MA +++F A ++K QL+G G+ L+ V Q + L
Sbjct: 464 RVEKPNTMAAQAYSHISNFY-AGKMKPNQQLDGDKQGA------ILDKVHQLSEHVTICL 516
Query: 525 GGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YL 564
+I++LS L+ V R + ++G TL +
Sbjct: 517 SAMITYLSEYGLEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDFTSKGSLFWTM 576
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLE 621
+ T G+RLLR W+ PL D + R+ VE L + V + L K+ DLE
Sbjct: 577 NRTKTRFGQRLLRKWVGRPLIDKSKLEERIAAVEELKDGENTIPVDKLKFMLGKIKTDLE 636
Query: 622 RLLGRV 627
++L R+
Sbjct: 637 KVLIRI 642
>gi|323341470|ref|ZP_08081711.1| DNA mismatch repair protein HexA [Lactobacillus ruminis ATCC 25644]
gi|417974515|ref|ZP_12615331.1| DNA mismatch repair protein MutS [Lactobacillus ruminis ATCC 25644]
gi|323091081|gb|EFZ33712.1| DNA mismatch repair protein HexA [Lactobacillus ruminis ATCC 25644]
gi|346329117|gb|EGX97420.1| DNA mismatch repair protein MutS [Lactobacillus ruminis ATCC 25644]
Length = 875
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 176/317 (55%), Gaps = 41/317 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE-------KASQWSEVIHAISCIDVLRSFAVTAS 762
P+ + + L AE+ + +E LF+E + + ++ AI+ +D L+SFA +
Sbjct: 497 PELKEKEALILGAESKTFELEYRLFVEVREKVKKQIERLQKLAAAIAELDCLQSFASVSE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGED 819
+ P ++ S + L+IK WHP LG+ VPND+ + E
Sbjct: 557 DNHFVC--PTLVSDSHD-----------LEIKAGWHPVVERVLGKQSY--VPNDVSMPEG 601
Query: 820 SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD 879
D LL+TGPNM GKST +R L I+AQ+GCFVP + + + D IFTR+GA D
Sbjct: 602 RD-----ILLITGPNMSGKSTYMRQLALTAIMAQIGCFVPAKEAKMPIFDQIFTRIGAAD 656
Query: 880 RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939
+++GESTF+VE ET LQ A+++SL++ DE+GRGT+T+DG A+A A+ + + +
Sbjct: 657 DLISGESTFMVEMKETNEALQNASKNSLLLFDEIGRGTATYDGMALAQAIIEYVHDNVQA 716
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LF+THYH LT H+ H+ K+ ELVFL+++ G SYG
Sbjct: 717 KTLFSTHYHELTVLDEELEHLENIHVGAVEKNG---------ELVFLHKMKKGPADRSYG 767
Query: 1000 LQVAVMAGVPQKVVEAA 1016
+ VA +AG+P+K++E A
Sbjct: 768 IHVAKLAGMPEKLLERA 784
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 163/364 (44%), Gaps = 40/364 (10%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
KQY +K QY D LF+++G FYE++ DA G + L+ +T + G+
Sbjct: 12 KQYLEIKEQYPDAFLFYRLGDFYEMFNDDAVKGAQLLELTLTTRNKKSKNPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP--D 389
+ + ++ L+ +GYKV EQ+E + AK ++ R+++ +VTP T +D G +
Sbjct: 72 AVQNYIDILIDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTNIDMRTGEAGE 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+L A+ E + YGFA+ D + + + DD S L ++ + KE++
Sbjct: 127 NNYLTALHEQDGK-------YGFAYADLSTGELRCSILEDDDS---LLNEMISLKTKEIV 176
Query: 450 YENRGLCKEAQKALRKFSAGSAALE-LTPA----MAVTDFLDASEVKKLVQLNGYFNGSS 504
+ + ++ + +RK ++ E + PA AV D E + L L Y +
Sbjct: 177 I-DESVSEKTIEKIRKLRVLVSSQESVEPASELSYAVQDVESDLEKEVLNHLLTYVKKTQ 235
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY- 563
L+ + ++ + + + +L + R G + G L+
Sbjct: 236 KRTLAHLQKAVHYEPAYFLKLDRYAKQNLELLQNA-RTG------------KKSGTLLWL 282
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLL+ WI PL + I R +V +++ + L+++ DLERL
Sbjct: 283 LDETKTAMGARLLKQWISRPLINPAQIKERQLIVNDQLEHYFERSSLQDELKQVYDLERL 342
Query: 624 LGRV 627
GR+
Sbjct: 343 AGRI 346
>gi|254786792|ref|YP_003074221.1| DNA mismatch repair protein MutS [Teredinibacter turnerae T7901]
gi|259511176|sp|C5BMR5.1|MUTS_TERTT RecName: Full=DNA mismatch repair protein MutS
gi|237683787|gb|ACR11051.1| DNA mismatch repair protein MutS [Teredinibacter turnerae T7901]
Length = 864
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 176/322 (54%), Gaps = 38/322 (11%)
Query: 730 LIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L E IEK ++ + A++ +DVL +FA A L+ P+ + A +
Sbjct: 534 LYEQLIEKLNEHLRELQISAVAVAELDVLNTFAERAHALK------LVKPEFRGEAGIEI 587
Query: 786 NGG--PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
G PV++ + L PF +PND+ L R L++TGPNMGGKST +R
Sbjct: 588 EKGRHPVVE-QVLTDPF---------IPNDLTLNAQQ-----RMLIITGPNMGGKSTYMR 632
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T L V+LAQ+G +VP E C L L D IFTR+G++D + G STF+VE TETA++L AT
Sbjct: 633 QTALIVLLAQVGSYVPAEACRLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNAT 692
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
DSLV++DE+GRGTST+DG ++A+A L E++ LFATHY +T A P V
Sbjct: 693 SDSLVLMDEIGRGTSTYDGLSLAWACVEHLAEKLKSFTLFATHYFEITALPAQLPTVKNV 752
Query: 964 HM-ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
H+ A ++ N +VFL+ + +G +SYGLQVA +AG+P V+ A
Sbjct: 753 HLDATEYQDN----------IVFLHNIQAGPASKSYGLQVAKLAGIPGAVLRQAKDVLHK 802
Query: 1023 MKKSIGESFKSSEQRSEFSSLH 1044
++ ES RS S+
Sbjct: 803 LETGKPESPAPVASRSSKPSMQ 824
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L++ + +QY +K+Q+ + L+F+++G FYEL+ DA K LD +TL+ GK
Sbjct: 12 LEQHTPMMQQYLRIKAQHPNELVFYRMGDFYELFYEDARKAAKLLD--VTLTARGKSNGE 69
Query: 327 GISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
I +G+ ++ + KLV G V EQ+ T + RK++ VVTP T
Sbjct: 70 PIPMAGVPYHAAENYLAKLVKLGVSVAICEQI-----GDPATTKGPVERKVMRVVTPGTV 124
Query: 382 VD 383
D
Sbjct: 125 SD 126
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L++ T+ G RLLR WI PL+D+ +++R + L++N V Q L+ + DLER+
Sbjct: 300 LNTTATAMGGRLLRRWINTPLRDLHTLHSRQSAIAALLENYRFEQ-VQQELKHIGDLERI 358
Query: 624 LGRVKAR 630
LGR+ R
Sbjct: 359 LGRIALR 365
>gi|281492893|ref|YP_003354873.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
KF147]
gi|281376545|gb|ADA66031.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
KF147]
Length = 840
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 185/336 (55%), Gaps = 33/336 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + +G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TDGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKA+ SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + + I + LFATHYH LT + H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS--SLH 1044
+++T G +SYG+ VA +AG+PQ ++E A ++ + K ++++ + S
Sbjct: 747 HKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLFDFT 806
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
E + I + R N D+ A + L LW ELK+S
Sbjct: 807 ENSSEIIEKIKR--QNVDNMTAREALNFLW-ELKDS 839
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 171/385 (44%), Gaps = 72/385 (18%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGID-----DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKDKHYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ +E++ G + + L+ F E + +++ ++ E L+ L+G
Sbjct: 166 LKAREIV---AGFTLD-ESQLKVF-------ERQMNLLISEQIEIPE-NLLIDLSGL--- 210
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ-- 560
ALEN L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 ------TALEN--------QVASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFATK 255
Query: 561 ----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 256 SSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQIFLD 315
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 316 HFFERSDLIEALKGVYDLERLASRV 340
>gi|403411535|emb|CCL98235.1| predicted protein [Fibroporia radiculosa]
Length = 1254
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 148/281 (52%), Gaps = 25/281 (8%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S W + ++ +D L S A +S A+ P P+ V D + L H
Sbjct: 922 SVWLRAVRVLAELDCLFSLA----KASSALGEPCCRPE----FVEGDTAW--FDFEELRH 971
Query: 799 P---FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
P A G G +PND+ LG D + R LLTGPNMGGKST +R T VI+AQLG
Sbjct: 972 PALSIATGLRGDF-IPNDVKLG----DGVGRLALLTGPNMGGKSTAMRMTATGVIMAQLG 1026
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
VP L D+I TR+GA D + + STF VE E +L+ AT SLVILDELGR
Sbjct: 1027 MLVPARRARLCPVDSILTRMGAYDNMFSSASTFKVEMDECCKILRDATPKSLVILDELGR 1086
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTST+DG AIA AV QL FATHY LT +FA HP++ HM
Sbjct: 1087 GTSTYDGMAIAGAVLHQLATHTLALSFFATHYGSLTDDFAYHPNIRNMHMETIVDDEK-- 1144
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+EL+FLY+L G S+G VA +AGVP +VVE A
Sbjct: 1145 -----RELIFLYKLVEGVASSSFGTHVASLAGVPSEVVERA 1180
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 144/507 (28%), Positives = 224/507 (44%), Gaps = 87/507 (17%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
+RD + RP +P YD RTLY+P +A K+ + +KQ+W +K + D +LFF+ GKF ELYE
Sbjct: 308 VRDKDGLRPGEPGYDPRTLYVPAKAWKEFTPFEKQFWEIKQNHFDTILFFQKGKFLELYE 367
Query: 302 LDAEIGHKELDWKIT---LSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQ 358
DA IGH E D K T L+ V R I L YKVGR++Q ET+
Sbjct: 368 EDARIGHTEFDLKFTREPLTAVESDRLAFRRCRSIFGPPNSLQKAWYKVGRVDQAETALG 427
Query: 359 AKAR------------------HTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKE 398
A+ R + ++ R+L V T T VD + D A H ++I+E
Sbjct: 428 AEMRLAADKKGGKTKSVAAEDKAKDKIVRRELNKVYTNGTLVDAELLTDEQAGHCVSIRE 487
Query: 399 GNCGPD-NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
+ D +G +G +D + + T DD L ++ Q+ PKE+I+ L
Sbjct: 488 EDIEADKDGRQGFGICVLDSSTSEFNLSTFEDDVCRTRLETMMRQLRPKEIIFTKGNLSV 547
Query: 458 EAQKALRKFSAGS---AALELTPAMAVTDFLDASEVKKLVQLNG------YFNGSSSPWS 508
+ L+ G+ +L + +A L E+ +L + +G +
Sbjct: 548 STTRLLKVILPGNCLWTSLRESEGLAYEKTL--KELTRLFPADDDNADLHSIHGLTDTVP 605
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLD-DVL--RNGDILPYKVYRDCLRMDGQTL--- 562
A+ +V +L+ L +D D+L +N +I L +DGQTL
Sbjct: 606 TAIRDVAGS-----------KYLNTLNIDKDILSMKNFNIYDPMKRGQGLVLDGQTLAHI 654
Query: 563 ----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
L C+T SGKRL R W+C PL++V I RLD V+ L+ +
Sbjct: 655 EVLLNSEGTEEGSLLKQLSRCITPSGKRLFRIWLCMPLREVSDITARLDAVQDLLDHPTF 714
Query: 607 VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMD 666
+ + LPDLER++ +R+ A +C V + KVL + F L GL D
Sbjct: 715 EQDFTKIAKGLPDLERVV----SRIHAKNCKVKDFL--KVL----EAFKGLSVGLAELAD 764
Query: 667 ---------LLMLMHKEGHIIPSLSRI 684
+L L+ +++P+L +
Sbjct: 765 TAESFQSKTILGLLRSAPNLLPNLKHV 791
>gi|374674289|dbj|BAL52180.1| mismatch repair protein MutS [Lactococcus lactis subsp. lactis IO-1]
Length = 840
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 185/336 (55%), Gaps = 33/336 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + +G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TDGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKA+ SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + + I + LFATHYH LT + H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS--SLH 1044
+++T G +SYG+ VA +AG+PQ ++E A ++ + K ++++ + S
Sbjct: 747 HKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLFDFA 806
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
E + I + R N D+ A + L LW ELK+S
Sbjct: 807 ENSSEIIEKIKR--QNVDNMTAREALNFLW-ELKDS 839
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 171/385 (44%), Gaps = 72/385 (18%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGID-----DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKDKHYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ +E++ G + + L+ F E + +++ ++ E L+ L+G
Sbjct: 166 LKAREIV---AGFTLD-ESQLKVF-------ERQMNLLISEQIEIPE-NLLIDLSGL--- 210
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ-- 560
ALEN L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 ------TALEN--------QVASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFATK 255
Query: 561 ----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 256 SSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQIFLD 315
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 316 HFFERSDLIEALKGVYDLERLASRV 340
>gi|126641297|ref|YP_001084281.1| mismatch repair protein [Acinetobacter baumannii ATCC 17978]
gi|126387181|gb|ABO11679.1| mismatch repair protein [Acinetobacter baumannii ATCC 17978]
Length = 573
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 236 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 282
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 283 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 336
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 337 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 396
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 397 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 446
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 447 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 502
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 503 QQQQHLQTSVQSDLFATLDSE 523
>gi|365924441|ref|ZP_09447204.1| DNA mismatch repair protein MutS [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420265396|ref|ZP_14767956.1| DNA mismatch repair protein MutS [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394428128|gb|EJF00719.1| DNA mismatch repair protein MutS [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 875
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 172/306 (56%), Gaps = 28/306 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TDL+ + E ++ + + AI+ +DV++ FAV + M + +
Sbjct: 513 TDLEYRLFVDIRERIKDQIKRLQRLAKAIAALDVVQGFAVVSERQHFVMPKLI------- 565
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+NG V +IK WHP G VPND+++ +D + LL+TGPNM GK
Sbjct: 566 -----ENGNDV-EIKDGWHPVVQEVMGKQSYVPNDVIMPKDLN-----ILLITGPNMSGK 614
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L V++AQ+GCFVP + L + D IFTR+GA D ++ G+STF+VE E
Sbjct: 615 STYMRQLALTVVMAQIGCFVPADSAKLPIFDQIFTRIGAADDLIAGQSTFMVEMKEANQA 674
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++ AT +SL++ DE+GRGT+T+DG A+A A+ + + ++ + LF+THYH LT S P
Sbjct: 675 IEHATSNSLILFDEIGRGTATYDGMALAQAIIEYVHDHVHAKTLFSTHYHELTGLSESLP 734
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ H+ K+ GD L+FL+++ G +SYG+ VA +AG+P +++ A+
Sbjct: 735 ELENIHVGAIEKN-------GD--LIFLHKMQPGPADKSYGVHVAKLAGMPAVLLKRATE 785
Query: 1019 AALAMK 1024
A++
Sbjct: 786 ILTALE 791
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 168/371 (45%), Gaps = 42/371 (11%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T + K
Sbjct: 6 KNTPMMEQYLKIKEQYSDAFLFYRLGDFYEMFYDDAIKGSQLLELTLTTRNKNAADKIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E + A+ ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVEQGYKVAICEQMEDPKLAQG-----MVKREVIQLVTPGTMIDNS 120
Query: 386 I--GPDAVHLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
+ +L A+ +EG +YGFA+ D + + ++ +S + L+
Sbjct: 121 VNEAKKNNYLTALHQEGE--------LYGFAYTDLSTGELKTASL---SSLEQVINELIS 169
Query: 443 VSPKEVIYENRGLCKEAQ-----KALRKFSAGSAALELTPA-MAVTDFLDASEVKKLVQL 496
+ KE++ + + K L S + +E + + D D+ E++ + L
Sbjct: 170 LQTKELVVDQTVTTATLEDLAPLKIL--ISKQNETIENSELNYTIQDLKDSLEIETIRHL 227
Query: 497 NGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
Y + + L+ + ++ + + H S+ RN ++L R +
Sbjct: 228 ISYLSNTQKRSLGHLQRAIHYEPRYFL---KMDHYSK-------RNLELLENS--RTGKK 275
Query: 557 MDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
LD T+ G RLL+ WI PL + E I R ++V+ L+ + + + L +
Sbjct: 276 AGTLLWLLDETKTAMGGRLLKQWIDRPLLEKEKITRRYNMVKLLLDHYFERSALQEDLTQ 335
Query: 617 LPDLERLLGRV 627
+ DLERL GRV
Sbjct: 336 VYDLERLAGRV 346
>gi|15674192|ref|NP_268367.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
Il1403]
gi|13878591|sp|Q9CDK9.1|MUTS_LACLA RecName: Full=DNA mismatch repair protein MutS
gi|12725276|gb|AAK06308.1|AE006450_1 mismatch repair protein MutS [Lactococcus lactis subsp. lactis
Il1403]
Length = 840
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 185/336 (55%), Gaps = 33/336 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + +G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TDGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKA+ SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + + I + LFATHYH LT + H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS--SLH 1044
+++T G +SYG+ VA +AG+PQ ++E A ++ + K ++++ + S
Sbjct: 747 HKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLFDFT 806
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
E + I + R N D+ A + L LW ELK+S
Sbjct: 807 ENSSEIIEKIKR--QNVDNMTAREALNFLW-ELKDS 839
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 171/385 (44%), Gaps = 72/385 (18%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGID-----DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKDKHYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ +E++ G + + L+ F E + +++ L+ E L+ L+G
Sbjct: 166 LKAREIV---AGFTLD-ESQLKVF-------ERQMNLLISEQLEIPE-NLLIDLSGL--- 210
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ-- 560
ALEN L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 ------TALEN--------QVASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFATK 255
Query: 561 ----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 256 SSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLISNSAIQKRMEIVQIFLD 315
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 316 HFFERSDLIEALKGVYDLERLASRV 340
>gi|392960659|ref|ZP_10326125.1| DNA mismatch repair protein mutS [Pelosinus fermentans DSM 17108]
gi|421054583|ref|ZP_15517550.1| DNA mismatch repair protein MutS [Pelosinus fermentans B4]
gi|421057355|ref|ZP_15520199.1| DNA mismatch repair protein mutS [Pelosinus fermentans B3]
gi|421065506|ref|ZP_15527247.1| DNA mismatch repair protein mutS [Pelosinus fermentans A12]
gi|421071446|ref|ZP_15532564.1| DNA mismatch repair protein mutS [Pelosinus fermentans A11]
gi|392440685|gb|EIW18354.1| DNA mismatch repair protein MutS [Pelosinus fermentans B4]
gi|392447073|gb|EIW24336.1| DNA mismatch repair protein mutS [Pelosinus fermentans A11]
gi|392454795|gb|EIW31614.1| DNA mismatch repair protein mutS [Pelosinus fermentans DSM 17108]
gi|392458760|gb|EIW35254.1| DNA mismatch repair protein mutS [Pelosinus fermentans A12]
gi|392463263|gb|EIW39233.1| DNA mismatch repair protein mutS [Pelosinus fermentans B3]
Length = 864
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 151/245 (61%), Gaps = 23/245 (9%)
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
L VPND L S++ + ++TGPNM GKST +R L V++AQ+G F+P ++S
Sbjct: 596 LFVPNDSELNHHSNEIM----IITGPNMAGKSTYMRQVALLVLMAQIGSFIPAREAIISP 651
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D + TG+STF+VE E A +L+ AT SL+ILDE+GRGTSTFDG +IA
Sbjct: 652 VDRIFTRVGASDDLSTGQSTFMVEMNEVAQILKHATSQSLIILDEIGRGTSTFDGMSIAR 711
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + ER+ + LFATHYH LT E A + H T+++ + A K + +VFL
Sbjct: 712 AVIEYIKERVKAKTLFATHYHELT-ELADY-HKTVKNYSVAVKERGSD-------VVFLR 762
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK----------SIGESFKSSEQR 1037
R+ G +SYG+ VA +AG+PQKV++ A + +++ S+ ES ++
Sbjct: 763 RIIPGGADKSYGIHVAQLAGLPQKVIKRAQELLVELEQNHVQSQNLSLSVAESAAATTPI 822
Query: 1038 SEFSS 1042
S F+S
Sbjct: 823 SLFTS 827
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 100/431 (23%), Positives = 186/431 (43%), Gaps = 55/431 (12%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG-KCRQVG 327
K + +QY +KSQ+ + +LFF++G FYE++ DAE+ +EL+ +T G + G
Sbjct: 4 KYTPMMEQYLEIKSQHENEILFFRMGDFYEMFFTDAELASRELEITLTARDGGQRVPMCG 63
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG 387
I D + KL+++GYKV EQ+E +QAK ++ R+++ ++TP T + +
Sbjct: 64 IPYHAADTYIAKLISKGYKVAICEQVEDPKQAKG-----IVKREVIKIITPGTIIAENLL 118
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
PD + + + +C +W T AL L ++ P E
Sbjct: 119 PDNNNNYLAVLYEEEEELILAAADISTGEC----LW-ATFLGSQRLTALYDQLFRLMPTE 173
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPW 507
++ ++ E + L F + + + + + S++ K +F P
Sbjct: 174 LVLASK---IENIEKLNTFISNRIPHCTHTTLTIDNLMLVSDLPK-----QHFMTDDLP- 224
Query: 508 SKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY---------------- 551
Q D+ +A+G L+ +L + + D+ ++ Y +
Sbjct: 225 --------QQDVALAAIGCLLYYLHQTVKTDLSHINRLINYNAFEYLTIDSTSMRNLEVT 276
Query: 552 ---RDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
RD + D LD T+ G RLL+ W+ +PL + I R D + L++ +
Sbjct: 277 RNVRDGGKKDTLLYVLDYTKTAMGGRLLKKWLEYPLMNTTHIIQRQDSIAELLEKPTLRQ 336
Query: 609 VVAQYLRKLPDLERLLGRVKARVQA--------SSCIVLPLIGKKVLKQQVKVFGSLVKG 660
+ + L + DLER+L R++ + SS +VLP I +++ K +L
Sbjct: 337 TIHETLANIYDLERILTRIEVGTASARDLIALKSSLMVLPTIKEQLQKTNTVFLSNLHFY 396
Query: 661 LRIAMDLLMLM 671
L +DL+ L+
Sbjct: 397 LHTHVDLVTLV 407
>gi|333994679|ref|YP_004527292.1| DNA mismatch repair protein MutS [Treponema azotonutricium ZAS-9]
gi|333735187|gb|AEF81136.1| DNA mismatch repair protein MutS [Treponema azotonutricium ZAS-9]
Length = 884
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 158/273 (57%), Gaps = 36/273 (13%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ +D +S A +++ A RP++ DN + I+G HP
Sbjct: 553 IAELDAAQSLARASTIHGWA--RPIV-----------DNENRLRIIEG-RHPVV---EAH 595
Query: 808 LP----VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC 863
LP +PND++L D+ L+TGPNM GKST LR L VI+AQ G FVP E
Sbjct: 596 LPRGEFIPNDVIL----DEAGIAFALITGPNMAGKSTYLRQAALTVIMAQAGSFVPAEEA 651
Query: 864 VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGY 923
++ + D I+ R+GA+D + GESTFLVE ETA +L AT+ SLVI+DE+GRGT T DG
Sbjct: 652 IIGMCDRIYCRVGASDSLARGESTFLVEMNETAYILHTATEKSLVIMDEIGRGTGTNDGL 711
Query: 924 AIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL 983
+IA+AV L++RI CR LFATHYH L++ SHP ++ + M S + E+
Sbjct: 712 SIAWAVCEDLLDRIKCRTLFATHYHELSQ--ISHPRMSNRSMEV---------SDNNGEI 760
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
VFL +L G+ SYGL A +AG+P+ V+E A
Sbjct: 761 VFLRKLKEGSTSNSYGLHAARLAGLPETVLERA 793
Score = 80.9 bits (198), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/415 (23%), Positives = 175/415 (42%), Gaps = 74/415 (17%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQVGISESGID 334
QY +K + +LFF++G FYE+++ DA L+ +T +G C G+
Sbjct: 4 QYRRIKRDHQGEVLFFRLGDFYEMFQEDAVEVSSLLNLTLTSRTGQPMC---GVPYHAAR 60
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI----GPDA 390
+ +L+ G KV EQ+ + N +I R++V ++TP TT+D +
Sbjct: 61 SYIARLMRLGKKVAICEQI-------SEPGNGLIERQVVEIITPGTTIDEDYLDRGSSNY 113
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+ LA+ + + FA++D + + + + + L L ++ KE+I
Sbjct: 114 LACLALSKESLS---------FAYIDLSIGDFYATSFPSENAAELLRGELERLDVKEMII 164
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD--ASEVKKLVQLNGYFNGSSSPWS 508
+ + L ++ A++ + + + D + + +LN F +S
Sbjct: 165 Q--------ESLLEEYKPIKDAIDERTGLVLNRWADWLFDKERSRERLNKQFGSASLKGF 216
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY----KVYRDC---------- 554
EN + + G L+ +L DD + ++P+ VY D
Sbjct: 217 GLGENAPE----IISAGALLDYL-----DDTAKT--LIPHVRAIAVYDDSEFVGIDEATQ 265
Query: 555 -----LR--MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
+R DG+ + +D T+ G+RLL+ I HPL+D IN RL +VE L
Sbjct: 266 RNLELIRNLQDGENHFTLLEVMDHTRTAMGRRLLKGRILHPLRDAAKINARLGMVEKLYH 325
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV---KARVQASSCIVLPLIGKKVLKQQVKVF 654
N E + L K PDLERL R+ KA + + + L ++ Q+ +VF
Sbjct: 326 NQEKLGCFRDMLAKTPDLERLCSRIAMDKAHGKDMAAVKNALNSFGLIYQESRVF 380
>gi|392576842|gb|EIW69972.1| hypothetical protein TREMEDRAFT_30126 [Tremella mesenterica DSM 1558]
Length = 948
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 169/300 (56%), Gaps = 27/300 (9%)
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L++ + A+ ++ V+ A I+ IDV S A ++ ++ RP++ + K V
Sbjct: 586 LVKEVVSIAASYTPVLEALDNLIAAIDVTVSLARVSANANTPYVRPVLFEKGKPTHV--- 642
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDI-LLGEDSD----DCLPRTLLLTGPNMGGKST 840
++G HP L V +D+ + D + C ++LTGPNMGGKST
Sbjct: 643 ------IVRGARHPC-------LEVQDDVSFIANDHEMKKGKC--EFVVLTGPNMGGKST 687
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R + ++AQ+GCFVP + L + D I R+GA D + G STF+ E ETA++L+
Sbjct: 688 YIRQIGVIALMAQIGCFVPADEAQLPVFDCILARVGAGDSQLKGVSTFMAEMLETATILR 747
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT+DSL+I+DELGRGTST+DG+ +A+A+ + +I C LFATHYH LT + PHV
Sbjct: 748 SATKDSLIIIDELGRGTSTYDGFGLAWAISEHIATKIRCFCLFATHYHELTALNQTQPHV 807
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ + SK D+++ LY++T G C +S+G+ VA +A P+ +++ A A
Sbjct: 808 KNLHVEAHVQPIKGGKSKQDRDITLLYKVTEGICDQSFGIHVAELAQFPESIIKLAKRKA 867
Score = 44.7 bits (104), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C TS G+RLL W+ PL ++ I R +VE + ++ + Q+L ++PD R
Sbjct: 337 LNQCKTSQGQRLLGRWLKQPLVNLHEIRQRQGIVEAFVDDALARQTLQEQFLSRMPDFHR 396
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSL 657
+ ++ V + +V +++ ++V +L
Sbjct: 397 ISKKLHRNVASLDEVVRVFYAIQLIGPMIEVLETL 431
>gi|259149396|emb|CAY86200.1| Msh2p [Saccharomyces cerevisiae EC1118]
Length = 964
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 177/338 (52%), Gaps = 27/338 (7%)
Query: 728 SILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
S L+ I ++ V IS + DV+ SFA T+S + RP + P
Sbjct: 593 SALVREIINITLTYTPVFEKISLVLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH 652
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
+ HP ++ + ND+ L D L ++TGPNMGGKST +R
Sbjct: 653 ---------LISSRHPVLEMQDDISFISNDVTLESGKGDFL----IITGPNMGGKSTYIR 699
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ ++AQ+GCFVPCE +++ D I R+GA D + G STF+VE ETAS+L+ A+
Sbjct: 700 QVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAGDSQLKGVSTFMVEILETASILKNAS 759
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
++SL+I+DELGRGTST+DG+ +A+A+ + +I C LFATH+H LT+ P+V
Sbjct: 760 KNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNM 819
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
H+ + N + D+++ LY++ G +S+G+ VA + P+K+V+ A A +
Sbjct: 820 HVVAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANEL 879
Query: 1024 K--KSIGESFKSS--------EQRSEFSSLHEEWLKTI 1051
K+ E K + E +L +EW++ +
Sbjct: 880 DDLKTNNEDLKKAKLSLQEVNEGNIRLKALLKEWIRKV 917
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|320588440|gb|EFX00909.1| DNA mismatch repair protein [Grosmannia clavigera kw1407]
Length = 862
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 182/325 (56%), Gaps = 28/325 (8%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ + A+ +S V+ ++ VL V S++ ++H P+ + + A +
Sbjct: 490 TQSSLVSEVVGVAASYSPVLERLA--GVLGHLDVIVSLAHCSVHAPIAYVRPRIHA--RG 545
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G VL+ HP ++ + ND++L +S L++TGPNMGGKST +R
Sbjct: 546 EGRTVLR--EARHPCLEMQDDVQFITNDVVLDRES----SAFLIITGPNMGGKSTYIRQI 599
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L+L D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 600 GVIALMAQIGCFVPCAEAELTLFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAE 659
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V I C LFATH+H LT +P VT H+
Sbjct: 660 SLIIIDELGRGTSTYDGFGLAWAISEHIVREIGCFALFATHFHELTALADRYPQVTNMHV 719
Query: 966 ACAFK--SNSENYSKGDQ--ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
+SE+ +K D+ E+ LY++ G C +S+G+ VA + P KVV A
Sbjct: 720 TAHISGTGSSEDTAKKDEKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAK---- 775
Query: 1022 AMKKSIGESFKSSEQRSEFSSLHEE 1046
+ +++ +FS+ H+E
Sbjct: 776 ----------RKADELEDFSTKHDE 790
Score = 43.5 bits (101), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G RLL W+ PL + I R +VE + ++E+ + + +LR +PDL R
Sbjct: 246 LNHCKTPLGGRLLSQWLKQPLMNKADIEQRQQLVEAFVNDTELRQTMQEDHLRSVPDLYR 305
Query: 623 LLGRVK 628
L R +
Sbjct: 306 LAKRFQ 311
>gi|307718809|ref|YP_003874341.1| DNA mismatch repair protein MutS [Spirochaeta thermophila DSM 6192]
gi|306532534|gb|ADN02068.1| DNA mismatch repair protein MutS [Spirochaeta thermophila DSM 6192]
Length = 867
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 163/275 (59%), Gaps = 38/275 (13%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
+++ ID L+S A A+ RP++ + VL +K HP
Sbjct: 552 SVAAIDCLQSLAYAATRY--GYTRPVVTTEL------------VLDVKEGRHPVV---EA 594
Query: 807 GLP----VPNDILLGEDSDDCLPRTL-LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
LP VPND+LL D RTL ++TGPNM GKST LR L V++AQ+G FVP +
Sbjct: 595 HLPTGSFVPNDLLL-----DPPRRTLAVITGPNMAGKSTFLRQNALIVLMAQMGSFVPAK 649
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
V+ +AD +F R+GA+D I GESTFLVE ETA +L AT S++I+DE+GRGT T D
Sbjct: 650 EAVIGIADRLFCRVGASDNIARGESTFLVEMNETAYILHHATPRSVIIMDEVGRGTGTID 709
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G +IA+AV L+ER+ R LFATH+H LTK +HP V +++ A + + +
Sbjct: 710 GLSIAWAVVEYLLERVKARTLFATHFHELTK--ITHPAVF--NLSMAVREDRDG------ 759
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+VFL R+ +GA +SYG+ VA +AGVP+ VV+ A
Sbjct: 760 -IVFLKRVRAGAAEKSYGIHVARLAGVPEAVVKRA 793
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 164/368 (44%), Gaps = 34/368 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQVGISESGI 333
+QYW K +Y + +LFF++G FYE++ DA+ + L +T +G+ C GI
Sbjct: 10 QQYWEFKKRYREEILFFRLGDFYEMFADDAKEASRILGITLTQRNGIPMC---GIPFHAA 66
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHL 393
+ + +L+ G K+ EQ+E E+ + + R+++ V+TP T D + +
Sbjct: 67 QNYIARLLRAGKKIAICEQVEVPEKGRG-----LARREVIEVITPGTVTDEELLEKQKNN 121
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
+ G + S+ + V+ + GT + L L ++SP E+I
Sbjct: 122 FLLAAAPAGKERVSL----SCVELSTGEFLAGT-APGSFAEILARELARISPSELILPES 176
Query: 454 GLCK-EAQKALRKFSAGSAALELTPAMAV---TDFLDASEVKKLVQLNGYFNGSSSPWSK 509
+ + E +K L + G + P T F + V L + SP
Sbjct: 177 AMEEPEIEKVLD--AHGEIYVNRFPDWYFDPRTSFERLVRHFRSVNLKAFGLEEDSPELI 234
Query: 510 ALENVMQH--DIGFSALGGLIS-HLSR----LMLDD-VLRNGDILPYKVYRDCLRMDGQT 561
++Q+ D + L + S H R L+LD+ +RN +++ K +D + T
Sbjct: 235 TAGPLLQYLEDTCHTLLPHVRSIHPYREEDALLLDETTIRNLELV--KNIQDG--GEHFT 290
Query: 562 LY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
LY L+ T G RLLR WI +PL I RL+ VE+L ++ ++ + + + D
Sbjct: 291 LYRVLNHTTTPMGARLLRRWILYPLVTPADIEARLEAVEHLYRDQHLLQTLRKLFASMLD 350
Query: 620 LERLLGRV 627
+ERL RV
Sbjct: 351 IERLATRV 358
>gi|302501199|ref|XP_003012592.1| hypothetical protein ARB_01205 [Arthroderma benhamiae CBS 112371]
gi|291176151|gb|EFE31952.1| hypothetical protein ARB_01205 [Arthroderma benhamiae CBS 112371]
Length = 942
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 160/295 (54%), Gaps = 22/295 (7%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA ++ + A RP I P+ + +K HP ++
Sbjct: 593 LAHLDVIVSFAHVSAHAPTAYVRPKIHPRGTGNTI----------LKEARHPCMEMQDDI 642
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 643 TFITNDVSLIRDESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 698
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 699 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 758
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN---SENYSKGDQELV 984
A+ +V I C LFATH+H LT +P AF + +E K QE+
Sbjct: 759 AISEHIVTEIKCFSLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVT 818
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSE 1039
LYR+ G C +S+G+ VA + P KVV A A + E F SS SE
Sbjct: 819 LLYRVEPGVCDQSFGIHVAELVRFPDKVVNMARQKAEEL-----EDFTSSGADSE 868
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+LA+K + V G F D + + V D+ + +LL+Q+ KE +
Sbjct: 142 ILAVKAATKAKEMRHV--GVCFADASVRELGVSEFVDNDLYSNFESLLIQLGVKECLIPA 199
Query: 453 RGLCKEAQKALRKFSAGSAALELT--PAMAVTDFLDASEVKKLVQ--------------- 495
G K+ + A + A S + +T P A ++ +L++
Sbjct: 200 EGQKKDVELAKLRQIADSCGVAITERPVSAFGTKDIEQDLSRLLKDETGPAMLPQTDLKL 259
Query: 496 -------LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
L Y N S P + + +HD+ + LD LR +++P
Sbjct: 260 AMGSASALISYLNAMSDPSNFGQYQLYKHDLA-----------QYMKLDASALRALNLMP 308
Query: 548 YKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
RD M +LY L+ C T G RLL W+ PL + + I R +VE + ++E
Sbjct: 309 GP--RDS--MKNMSLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTE 364
Query: 606 VVMVVAQ-YLRKLPDLERLLGRVK 628
+ + + +LR +PDL RL R +
Sbjct: 365 LRQTMQESHLRSIPDLYRLAKRFQ 388
>gi|385831796|ref|YP_005869609.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
CV56]
gi|418038832|ref|ZP_12677148.1| hypothetical protein LLCRE1631_01955 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|326407804|gb|ADZ64875.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. lactis
CV56]
gi|354692839|gb|EHE92644.1| hypothetical protein LLCRE1631_01955 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 840
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 185/336 (55%), Gaps = 33/336 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + +G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TDGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKA+ SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + + I + LFATHYH LT + H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHDHIGAKTLFATHYHELTDLDEALVHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS--SLH 1044
+++T G +SYG+ VA +AG+PQ ++E A ++ + K ++++ + S
Sbjct: 747 HKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLFDFT 806
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
E + I + R N D+ A + L LW ELK+S
Sbjct: 807 ENSSEIIEKIKR--QNVDNMTAREALNFLW-ELKDS 839
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 171/385 (44%), Gaps = 72/385 (18%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+++S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 ERISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGID-----DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKDKHYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ +E++ G + + L+ F E + +++ ++ E L+ L+G
Sbjct: 166 LKAREIV---AGFTLD-ESQLKVF-------ERQMNLLISEQIEIPE-NLLIDLSGL--- 210
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ-- 560
ALEN L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 ------TALEN--------QVASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFATK 255
Query: 561 ----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 256 SSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQIFLD 315
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 316 HFFERSDLIEALKGVYDLERLASRV 340
>gi|302916663|ref|XP_003052142.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733081|gb|EEU46429.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1100
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 155/285 (54%), Gaps = 19/285 (6%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ + A++ +D L S + A+ RP LP S +P + NG H A
Sbjct: 802 DAVSALATLDCLLSLSKVAAQP--GYSRPSFLPSSSDPTISITNG---------RHAIAE 850
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
G +P L S P L+TGPNMGGKS+ +RA L V+LAQ+G FVP +
Sbjct: 851 HTLEGGYIPFSTKLAHPS----PLAHLITGPNMGGKSSFVRALALIVLLAQVGSFVPADA 906
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
L+L D I TR GA D + GESTF+VE +ETA +L+ A SLVILDELGRGTST DG
Sbjct: 907 LSLTLCDAIHTRTGARDNLFAGESTFMVEVSETARILRSAGPRSLVILDELGRGTSTHDG 966
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
AIA AV + +V C LF THY L + V HM K +E + G++E
Sbjct: 967 AAIAQAVLQHVVTETRCLTLFITHYQNLARVAEGLDGVKNVHM----KFKAEKGADGEEE 1022
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ FLY + G SYGL VA +A +P+KV+E AS + M++ +
Sbjct: 1023 VTFLYEVGEGVAHRSYGLNVARLARIPKKVIEVASLKSSQMEQEM 1067
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 160/407 (39%), Gaps = 57/407 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLSGVGKCR 324
Q+ ++K +++D +L +VG + + DA I KEL D + + + +
Sbjct: 203 QFLDIKRKHLDTILIVEVGYKFRFFGEDARIAAKELSIVCIPGKMRYDEHPSEAHLDRFA 262
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVTPSTTVD 383
I + ++LVA G+KVG + Q+ET+ KA + N+ RKL N+ T T +D
Sbjct: 263 SASIPVHRLPVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNTPFIRKLTNLYTKGTYID 322
Query: 384 GTIGPD---------AVHLLAIKEGNC---GPDNGSVVYGFAFVDCAALRVWVGTINDDA 431
D +LL I E G D V G V A + D
Sbjct: 323 ENGELDQGSGSGAPSGGYLLCITETKAKGWGTDE-KVDVGILAVQPATGDIIYDNFEDGF 381
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-------AALELTPAMAVTDF 484
+ + L+ +SP E + L K K ++ S S + +E P
Sbjct: 382 MRSEIETRLLHISPCEFLIVG-DLTKGTDKLVQHLSGSSTNVFGDRSRVERVPRGKTMAA 440
Query: 485 LDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS-ALGGLISHLSRLMLDDV---- 539
S V + N + L+ V++ + L +I+HL L+ +
Sbjct: 441 EAYSHVTQFYADKLKENTQDETAAALLDKVLKLPEPVTICLSAMINHLQEYGLEHIFDLT 500
Query: 540 ------------LRNGDIL-PYKVYRDCL-RMDGQTLY--LDSCVTSSGKRLLRSWICHP 583
L NG L +VYR+ + +L+ LD +T G RLLR W+ P
Sbjct: 501 KYFQSFSTRSHMLINGTTLESLEVYRNSTDHSEKGSLFWALDKTITRPGHRLLRKWVGRP 560
Query: 584 LKDVEGINNRLDVVEYLMK---NSEVVMVVAQYLRKLPDLERLLGRV 627
L D E + RL VE L++ + V + A DLER L R+
Sbjct: 561 LLDQELLEGRLAAVEELLEKQSTAPVAQLEALLANAKTDLERSLIRI 607
>gi|403217955|emb|CCK72447.1| hypothetical protein KNAG_0K00810 [Kazachstania naganishii CBS 8797]
Length = 974
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 186/353 (52%), Gaps = 30/353 (8%)
Query: 728 SILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
SIL++ + +S V+ IS + DVL SFA +S + RP +
Sbjct: 604 SILVKEIVSITLTYSPVLEKISLVLAHLDVLTSFAHVSSYAPIPYVRPTM---------- 653
Query: 784 QDNGGP-VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
D G + HP ++ + + ND+ L +DS + L ++TGPNMGGKST +
Sbjct: 654 HDFGSKRKTHLVASRHPVLEMQDDIVFIANDVDLEKDSKEFL----IITGPNMGGKSTYI 709
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R + ++AQ+GCFVPCE +++ D I R+GA D + G STF+VE ETAS+L+ A
Sbjct: 710 RQVGVITLMAQIGCFVPCEEAEIAVVDAILCRVGAGDSQLKGVSTFMVEMLETASILKNA 769
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SL+I+DELGRGTST+DG+ +A+A+ + ++I C LFATH+H LT +V
Sbjct: 770 TENSLIIVDELGRGTSTYDGFGLAWAIAEHIAKKIKCFTLFATHFHELTSLADKLSNVVN 829
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
H+ A SE ++ LY++ G +S+G+ VA + PQK+V+ A A
Sbjct: 830 MHVV-AHIEQSEKSQHDSDDITLLYKVELGISDQSFGIHVAEVVQFPQKIVKMAKRKAAE 888
Query: 1023 MK--KSIGESFKS--------SEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDD 1065
++ K ES K +E + L + W++++ + D DD
Sbjct: 889 LEDLKQSNESLKKNKLSVSEINEGNQQLKKLLQSWVQSVKELGLDDPEKLSDD 941
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 81/283 (28%)
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY------ENR-- 453
P +G+ + G AFVD + ++ + I D+ + L + L+Q+ KE + EN
Sbjct: 152 NPKDGNCLIGVAFVDTSDYKLGMLDILDNEVFSNLESFLIQLGVKECLVPDLSHAENNQE 211
Query: 454 --------GLCKEAQKALR--KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
C A +R +F+ G+ +E D + + K ++ L F
Sbjct: 212 WTKIVNVIDRCGTAATLIRSSQFNKGNEDVE-------NDLIKLTNDKLIMSLPQKF--- 261
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL- 562
SP + A L+ +L+ L DVL +++ + + ++ +++D ++
Sbjct: 262 -SP------------LALGACHALLDYLNLLSNSDVLGKFELVQHSL-KEFIKLDASSIK 307
Query: 563 -------------------------------------YLDSCVTSSGKRLLRSWICHPLK 585
L+ C T++G RLL WI PL
Sbjct: 308 ALNLYPQGPSNPTMTSTQTSNFSYGFNSKGKVTSLFQLLNHCKTNAGIRLLNEWIKQPLT 367
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLERLLGRV 627
D+ IN R ++VEYL+ E+ ++ YL PDL RL R+
Sbjct: 368 DMTKINTRHNLVEYLIDQLELRQLLQCDYLPLFPDLRRLTKRL 410
>gi|421808544|ref|ZP_16244391.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC035]
gi|410415692|gb|EKP67477.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC035]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIYQNQ---IGFALLDLSA 154
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 559 GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEVVMVVAQY 613
G +L+ ++ C T+ G RLL + P++D ++ RLD +E L++ S V MV
Sbjct: 295 GTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPVRMV---- 350
Query: 614 LRKLPDLERLLGRV 627
L+++ D+ER+L RV
Sbjct: 351 LKEIGDIERVLSRV 364
>gi|330840928|ref|XP_003292459.1| hypothetical protein DICPUDRAFT_50444 [Dictyostelium purpureum]
gi|325077299|gb|EGC31021.1| hypothetical protein DICPUDRAFT_50444 [Dictyostelium purpureum]
Length = 919
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 172/301 (57%), Gaps = 30/301 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ +DV + A +S++ RP I P V I G HP ++G
Sbjct: 619 IATLDVFVTMAHISSIAPTPFVRPEIHPLGTGNTV----------IFGGRHPCVETQDGV 668
Query: 808 LPVPNDI-LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ NDI L+ E+S + ++TGPNMGGKST +R L V++AQ+GCFVP + ++S
Sbjct: 669 SFIANDIELIREES-----QFQIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPAQKAIVS 723
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I +R+GA D + G STF+ E ET+ +L+ AT++SL+I+DELGRGTST+DG+ +A
Sbjct: 724 VVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDELGRGTSTYDGFGLA 783
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+ + + +I LFATH+H LT P V H++ + ++N+ L
Sbjct: 784 WGIAEYICNQIGGFCLFATHFHELTILADIIPVVKNLHVSASTENNT---------FTLL 834
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
Y++ SGAC +S+G+ VAV+A PQ+V+E A A + ESF+S+ + +S EE
Sbjct: 835 YKVESGACDQSFGIHVAVLADFPQQVIETAKLKAKEL-----ESFESNTLKQNHNSFLEE 889
Query: 1047 W 1047
+
Sbjct: 890 F 890
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 42/251 (16%)
Query: 404 DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKAL 463
+ GS+V+G AF D + V D+ + + L + +MQ+S KE + + + K
Sbjct: 171 EKGSIVFGIAFGDATFKTLGVSEFMDNDNLSNLSSFIMQMSIKECLLYSDPKNYDYAKVK 230
Query: 464 RKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSA 523
K + P DF + + L +L G + K EN +Q +
Sbjct: 231 EKLAEADIPFTEVPK---ADFSSKNAEQDLTRLLGSVKNNLLDLEK--ENAIQ------S 279
Query: 524 LGGLISHLSRL--------------------MLDDV-LRNGDILPYKVYRD-------CL 555
LI HL L LD R I+ K +
Sbjct: 280 ASCLIKHLDLLSNPNYFGKFKLEKFDLNKYMKLDSASFRGLHIIDLKEHNSSGLPNSSAT 339
Query: 556 RMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQ 612
Q+LY L+ C T G RLL W+ PL D E I RL+ VE + E+ + +
Sbjct: 340 STKDQSLYNLLNQCNTPMGSRLLLQWVKQPLLDTEEIEMRLNFVETFFNDIELRQSLRSN 399
Query: 613 YLRKLPDLERL 623
L+K+ DL+RL
Sbjct: 400 DLKKIGDLDRL 410
>gi|322435849|ref|YP_004218061.1| DNA mismatch repair protein MutS [Granulicella tundricola MP5ACTX9]
gi|321163576|gb|ADW69281.1| DNA mismatch repair protein MutS [Granulicella tundricola MP5ACTX9]
Length = 902
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 178/318 (55%), Gaps = 39/318 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE-------KASQWSEVIHAISCIDVLRSFAVTAS 762
P+ + ++ L A+ S+ IE LF E A + E ++ ID++ FA A+
Sbjct: 543 PELKEYEAKILTAQERSLEIERRLFSELRAQLLAAAGRMRETARKVAEIDLMSCFAHLAA 602
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENG-GLPVPNDILLGE 818
+ RP++ + G + ++G HP + E+G G VPN + L
Sbjct: 603 LRGWV--RPVV-----------EEGCALEFVQG-RHPVVERRMEESGAGRFVPNSLYLDA 648
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
D+ P LL+TGPNMGGKST LR L V++AQ GCFVP E + L D I+TR+GA+
Sbjct: 649 DAG---PSLLLMTGPNMGGKSTYLRMAALLVVMAQCGCFVPAERMRVGLVDRIYTRIGAS 705
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D + G STF+VE TETA++L AT SLV+LDE+GRGT+T+DG ++A+A L +I
Sbjct: 706 DNVARGRSTFMVEMTETAAILNTATNKSLVLLDEMGRGTATYDGLSLAWATVEHLHNKIG 765
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
R LFATHYH LT + L+++ K N+ +VFL+ + +GA +SY
Sbjct: 766 ARALFATHYHELT--LLADRLTKLKNVRVTVKENAGG-------IVFLHSVEAGAASKSY 816
Query: 999 GLQVAVMAGVPQKVVEAA 1016
G++VA +AG+P V+ A
Sbjct: 817 GIEVARLAGLPNGVIARA 834
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 169/404 (41%), Gaps = 64/404 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ--- 325
+++ +QY+ K + D L+F ++G FYEL+ DA + +EL ++TL+ K ++
Sbjct: 10 QLTPVMRQYFAAKEAHPDCLMFCRIGDFYELFYEDAILVSREL--QLTLTARDKEKKQPM 67
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + +++L+ +GY++ EQ+E + K ++ R++ V+TP T VD
Sbjct: 68 CGVPYHAAEVYLQRLLRKGYRIALCEQMEDPKTVK-----GIVKREVTRVLTPGTAVDPA 122
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+G LA G V G A VD + + A L +V P
Sbjct: 123 LGAGESCWLASVVMVKG------VAGVAMVDLSTGEFRATEFVGAGAWALAVDELGRVKP 176
Query: 446 KEVIYENRGL--CKEAQKALRKFSAGSAALELTPAM-------------------AVTDF 484
E++Y + GL + ++L+ + + E P AV D+
Sbjct: 177 AELVYASGGLLGASGSNRSLKLGADPTQVPEAGPGAPSSVDDSDGAGLDGIKTKSAVEDW 236
Query: 485 LDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ +E L L +F S + H+ A GGL+ +L R L + +
Sbjct: 237 VMTAE-HALPLLRSHFRVLSL----DGLGLGGHEAAGVAAGGLLHYL-RQQKQGALEHVE 290
Query: 545 ILPYKVYRDCLRMD------------------GQT--LY-LDSCVTSSGKRLLRSWICHP 583
+ + CL +D QT LY LD+C T GKRLLR+ + P
Sbjct: 291 AVRFYERSGCLELDAVSVRNLELVEPLFSGESAQTTLLYTLDACCTPMGKRLLRATLLRP 350
Query: 584 LKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ I RLD V + V + + L DLERLLGRV
Sbjct: 351 AMGLGEIEVRLDAVGEAAADLRRREGVRRAMNGLLDLERLLGRV 394
>gi|430843136|ref|ZP_19461037.1| DNA mismatch repair protein mutS [Enterococcus faecium E1050]
gi|430497885|gb|ELA73902.1| DNA mismatch repair protein mutS [Enterococcus faecium E1050]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTD-----FLDASEV---------KKLV 494
+ L E LR+ +G L + + + FL + V K L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLKKEATGKLLT 230
Query: 495 QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
L+ S + KA+E H + L L +R G
Sbjct: 231 YLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KNSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|327308508|ref|XP_003238945.1| DNA mismatch repair protein Msh2 [Trichophyton rubrum CBS 118892]
gi|326459201|gb|EGD84654.1| DNA mismatch repair protein Msh2 [Trichophyton rubrum CBS 118892]
Length = 942
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 159/290 (54%), Gaps = 22/290 (7%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA ++ + A RP I P+ + +K HP ++
Sbjct: 593 LAHLDVIVSFAHVSAHAPTAYVRPKIHPRGTGNTI----------LKEARHPCMEMQDDI 642
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 643 TFITNDVSLIRDESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 698
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 699 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 758
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN---SENYSKGDQELV 984
A+ +V I C LFATH+H LT +P AF + +E K +QE+
Sbjct: 759 AISEHIVTEIKCFSLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKNQEVT 818
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
LYR+ G C +S+G+ VA + P KVV A A + E F SS
Sbjct: 819 LLYRVEPGVCDQSFGIHVAELVRFPDKVVNMARQKAEEL-----EDFTSS 863
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 45/264 (17%)
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+LA+K + V G F D + + V D+ + +LL+Q+ KE +
Sbjct: 142 ILAVKAATKAKEMRHV--GVCFADASVRELGVSEFVDNDLYSNFESLLIQLGVKECLIPA 199
Query: 453 RGLCKEAQKALRKFSAGSAALELT--PAMAVTDFLDASEVKKLVQ--------------- 495
G K+ + A + A S + +T PA A ++ +L++
Sbjct: 200 EGQKKDVELAKLRQIADSCGVAITERPAGAFGTKDIEQDLSRLLKDETGPAMLPQTDLKL 259
Query: 496 -------LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
L Y N S P + + +HD+ + LD LR +++P
Sbjct: 260 AMGSASALISYLNSMSDPSNFGQYQLYKHDLA-----------QYMKLDASALRALNLMP 308
Query: 548 YKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
RD M +LY L+ C T G RLL W+ PL + + I R +VE + ++E
Sbjct: 309 GP--RDS--MKNMSLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTE 364
Query: 606 VVMVVAQ-YLRKLPDLERLLGRVK 628
+ + + +LR +PDL RL R +
Sbjct: 365 LRQTMQENHLRSIPDLYRLAKRFQ 388
>gi|293567847|ref|ZP_06679188.1| DNA mismatch repair protein MutS [Enterococcus faecium E1071]
gi|294619660|ref|ZP_06699078.1| DNA mismatch repair protein MutS [Enterococcus faecium E1679]
gi|406579254|ref|ZP_11054486.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD4E]
gi|406581627|ref|ZP_11056764.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD3E]
gi|406584416|ref|ZP_11059447.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD2E]
gi|406589917|ref|ZP_11064331.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD1E]
gi|410938032|ref|ZP_11369890.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD5E]
gi|424779752|ref|ZP_18206649.1| DNA mismatch repair protein MutS [Enterococcus faecium V689]
gi|424964630|ref|ZP_18378706.1| DNA mismatch repair protein MutS [Enterococcus faecium P1190]
gi|424972028|ref|ZP_18385422.1| DNA mismatch repair protein MutS [Enterococcus faecium P1139]
gi|424977413|ref|ZP_18390428.1| DNA mismatch repair protein MutS [Enterococcus faecium P1123]
gi|425038972|ref|ZP_18443548.1| DNA mismatch repair protein MutS [Enterococcus faecium 513]
gi|425061613|ref|ZP_18464828.1| DNA mismatch repair protein MutS [Enterococcus faecium 503]
gi|427397019|ref|ZP_18889645.1| DNA mismatch repair protein mutS [Enterococcus durans FB129-CNAB-4]
gi|430861346|ref|ZP_19478903.1| DNA mismatch repair protein mutS [Enterococcus faecium E1573]
gi|430952593|ref|ZP_19486399.1| DNA mismatch repair protein mutS [Enterococcus faecium E1576]
gi|431000726|ref|ZP_19488207.1| DNA mismatch repair protein mutS [Enterococcus faecium E1578]
gi|431234177|ref|ZP_19502946.1| DNA mismatch repair protein mutS [Enterococcus faecium E1622]
gi|431255693|ref|ZP_19504816.1| DNA mismatch repair protein mutS [Enterococcus faecium E1623]
gi|431303464|ref|ZP_19508311.1| DNA mismatch repair protein mutS [Enterococcus faecium E1626]
gi|431697298|ref|ZP_19524835.1| DNA mismatch repair protein mutS [Enterococcus faecium E1904]
gi|447911658|ref|YP_007393070.1| DNA mismatch repair protein MutS [Enterococcus faecium NRRL B-2354]
gi|291589432|gb|EFF21239.1| DNA mismatch repair protein MutS [Enterococcus faecium E1071]
gi|291594097|gb|EFF25553.1| DNA mismatch repair protein MutS [Enterococcus faecium E1679]
gi|402924882|gb|EJX45066.1| DNA mismatch repair protein MutS [Enterococcus faecium V689]
gi|402946224|gb|EJX64513.1| DNA mismatch repair protein MutS [Enterococcus faecium P1190]
gi|402956777|gb|EJX74212.1| DNA mismatch repair protein MutS [Enterococcus faecium P1139]
gi|402966003|gb|EJX82676.1| DNA mismatch repair protein MutS [Enterococcus faecium P1123]
gi|403017982|gb|EJY30699.1| DNA mismatch repair protein MutS [Enterococcus faecium 513]
gi|403040830|gb|EJY51878.1| DNA mismatch repair protein MutS [Enterococcus faecium 503]
gi|404455559|gb|EKA02403.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD4E]
gi|404459393|gb|EKA05759.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD3E]
gi|404464117|gb|EKA09678.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD2E]
gi|404470103|gb|EKA14775.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD1E]
gi|410733671|gb|EKQ75594.1| DNA mismatch repair protein MutS [Enterococcus sp. GMD5E]
gi|425722345|gb|EKU85240.1| DNA mismatch repair protein mutS [Enterococcus durans FB129-CNAB-4]
gi|430550172|gb|ELA89977.1| DNA mismatch repair protein mutS [Enterococcus faecium E1573]
gi|430557192|gb|ELA96660.1| DNA mismatch repair protein mutS [Enterococcus faecium E1576]
gi|430562385|gb|ELB01617.1| DNA mismatch repair protein mutS [Enterococcus faecium E1578]
gi|430573203|gb|ELB12033.1| DNA mismatch repair protein mutS [Enterococcus faecium E1622]
gi|430577891|gb|ELB16471.1| DNA mismatch repair protein mutS [Enterococcus faecium E1623]
gi|430580105|gb|ELB18585.1| DNA mismatch repair protein mutS [Enterococcus faecium E1626]
gi|430597568|gb|ELB35359.1| DNA mismatch repair protein mutS [Enterococcus faecium E1904]
gi|445187367|gb|AGE29009.1| DNA mismatch repair protein MutS [Enterococcus faecium NRRL B-2354]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTD-----FLDASEV---------KKLV 494
+ L E LR+ +G L + + + FL + V K L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLKKEATGKLLT 230
Query: 495 QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
L+ S + KA+E H + L L +R G
Sbjct: 231 YLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KNSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|421694268|ref|ZP_16133893.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-692]
gi|424060437|ref|ZP_17797928.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab33333]
gi|445492772|ref|ZP_21460618.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AA-014]
gi|404568270|gb|EKA73374.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-692]
gi|404668389|gb|EKB36298.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab33333]
gi|444762976|gb|ELW87322.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AA-014]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|452840462|gb|EME42400.1| hypothetical protein DOTSEDRAFT_54773 [Dothistroma septosporum NZE10]
Length = 923
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 170/306 (55%), Gaps = 26/306 (8%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L+ + A+ + VI ++ + DV+ SFA + + A RP I P+
Sbjct: 557 TQSGLVNEVVNVAASYCPVIEKLAGVLAHLDVIVSFAHVSVHAPTAYIRPKIHPRGTGST 616
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI-LLGEDSDDCLPRTLLLTGPNMGGKST 840
+ +K HP ++ + ND+ L+ E+S+ L++TGPNMGGKST
Sbjct: 617 I----------LKEARHPCMEMQDDVQFITNDVSLVREESE-----FLIITGPNMGGKST 661
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R + ++AQ+GCFVPC L+L D I R+GA+D + G STF+ E ET+++L+
Sbjct: 662 YIRQIGVIALMAQIGCFVPCSEAELTLFDCILARVGASDSQLKGVSTFMAEMLETSNILK 721
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT++SLVI+DELGRGTST+DG+ +AYA+ +++ I C +FATH+H LT A++ V
Sbjct: 722 TATKESLVIIDELGRGTSTYDGFGLAYAISEHIIKEIGCYSMFATHFHELTSLVATYRQV 781
Query: 961 TLQHMACAFKSNSENYSKGD------QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
H+ ++ GD +E+ LY++ G +S+G+ VA + PQKVV
Sbjct: 782 QNLHVVAHMGDGEDSVMDGDSHTSRRREVTLLYKVVPGISDQSFGIHVAELVRFPQKVVN 841
Query: 1015 AASHAA 1020
A A
Sbjct: 842 MAKRKA 847
Score = 46.6 bits (109), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+SC T G RLL W+ PL E I R +VE + ++E+ + ++LR +PDL R
Sbjct: 313 LNSCKTPVGSRLLAQWLKQPLMSQEEIERRQQLVEAFVNDTELRQTLQEEHLRSIPDLYR 372
Query: 623 LLGRVKAR 630
L + + +
Sbjct: 373 LAKKFQRK 380
>gi|417551140|ref|ZP_12202218.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-18]
gi|417563595|ref|ZP_12214469.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC143]
gi|395555351|gb|EJG21352.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC143]
gi|400385595|gb|EJP48670.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-18]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E + + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSTQVIEKV 842
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|431439105|ref|ZP_19513286.1| DNA mismatch repair protein mutS [Enterococcus faecium E1630]
gi|431760154|ref|ZP_19548757.1| DNA mismatch repair protein mutS [Enterococcus faecium E3346]
gi|430586780|gb|ELB25028.1| DNA mismatch repair protein mutS [Enterococcus faecium E1630]
gi|430625258|gb|ELB61906.1| DNA mismatch repair protein mutS [Enterococcus faecium E3346]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNESSAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|386346893|ref|YP_006045142.1| DNA mismatch repair protein mutS [Spirochaeta thermophila DSM 6578]
gi|339411860|gb|AEJ61425.1| DNA mismatch repair protein mutS [Spirochaeta thermophila DSM 6578]
Length = 867
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 163/275 (59%), Gaps = 38/275 (13%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
+++ ID L+S A A+ RP++ + VL +K HP
Sbjct: 552 SVAAIDCLQSLAYAATRY--GYTRPVLTTEL------------VLDVKEGRHPVV---EA 594
Query: 807 GLP----VPNDILLGEDSDDCLPRTL-LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
LP VPND+LL D RTL ++TGPNM GKST LR L V++AQ+G FVP +
Sbjct: 595 HLPTGSFVPNDLLL-----DPPRRTLAVITGPNMAGKSTFLRQNALIVLMAQMGSFVPAK 649
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
V+ +AD +F R+GA+D I GESTFLVE ETA +L AT S++I+DE+GRGT T D
Sbjct: 650 EAVIGIADRLFCRVGASDNIARGESTFLVEMNETAYILHHATPRSVIIMDEVGRGTGTID 709
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G +IA+AV L+ER+ R LFATH+H LTK +HP V +++ A + + +
Sbjct: 710 GLSIAWAVVEYLLERVKARTLFATHFHELTK--ITHPAVF--NLSMAVREDRDG------ 759
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+VFL R+ +GA +SYG+ VA +AGVP+ VV+ A
Sbjct: 760 -IVFLKRVRAGAAEKSYGIHVARLAGVPEAVVKRA 793
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 164/368 (44%), Gaps = 34/368 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQVGISESGI 333
+QYW K +Y + +LFF++G FYE++ DA+ + L +T +G+ C GI
Sbjct: 10 QQYWEFKKRYREEILFFRLGDFYEMFADDAKEASRILGITLTQRNGIPMC---GIPFHAA 66
Query: 334 DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHL 393
+ + +L+ G K+ EQ+E E+ + + R+++ V+TP T D + +
Sbjct: 67 QNYIARLLRAGKKIAICEQVEVPEKGRG-----LARREVIEVITPGTVTDEELLEKQKNN 121
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
+ G + S+ + V+ + GT + L L ++SP E+I
Sbjct: 122 FLLAAAPAGKERVSL----SCVELSTGEFLAGT-APGSFAEILARELARISPSELILPES 176
Query: 454 GLCK-EAQKALRKFSAGSAALELTPAMAV---TDFLDASEVKKLVQLNGYFNGSSSPWSK 509
+ + E QK L + G + P T F + V L + SP
Sbjct: 177 AMEEPEIQKVLD--AHGEIYVNRFPEWYFDPRTSFERLVRHFRSVNLKAFGLEEDSPELI 234
Query: 510 ALENVMQH--DIGFSALGGLIS-HLSR----LMLDD-VLRNGDILPYKVYRDCLRMDGQT 561
++Q+ D + L + S H R L+LD+ +RN +++ K +D + T
Sbjct: 235 TAGPLLQYLEDTCHTLLPHVRSIHPYREEDALLLDETTIRNLELV--KNIQDG--GEHFT 290
Query: 562 LY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
LY L+ T G RLLR WI +PL I RL+ VE+L ++ ++ + + + D
Sbjct: 291 LYRVLNHTTTPMGARLLRRWILYPLVAPADIEARLEAVEHLYRDQHLLQTLRKLFASMLD 350
Query: 620 LERLLGRV 627
+ERL RV
Sbjct: 351 IERLATRV 358
>gi|445406296|ref|ZP_21431734.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-57]
gi|444781584|gb|ELX05501.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-57]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E + + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSTQVIEKV 842
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|403675319|ref|ZP_10937498.1| DNA mismatch repair protein MutS [Acinetobacter sp. NCTC 10304]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRILMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
MV L+++ D+ER+L RV
Sbjct: 348 RMV----LKEIGDIERVLSRV 364
>gi|373123475|ref|ZP_09537321.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium 21_3]
gi|371660808|gb|EHO26052.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium 21_3]
Length = 843
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 29/296 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+AE + L+ + ++ HA++ ID L +A+ S RP
Sbjct: 514 LEAELFNHLLNQIKVYLPKLHDLSHALATIDAL--YALAEISSENGYTRP---------- 561
Query: 782 VRQDNGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
Q + G + +K HP V ND+ +GED+D L++TGPNMGGKST
Sbjct: 562 --QFHTGHSIHMKEARHPILDRMMKTTRYVSNDLEMGEDND-----ILMITGPNMGGKST 614
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T L VI+AQ+GCFVP + + + D IFTR+GA+D IM+G+STF+VE E + LQ
Sbjct: 615 YMRQTVLLVIMAQIGCFVPAKKAEMPIFDQIFTRIGASDDIMSGQSTFMVEMIEANNALQ 674
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT +SL++ DE+GRGTST+DG A+A A+ ++ I + LF+THYH LT+ + +
Sbjct: 675 NATANSLILFDEIGRGTSTYDGMALAQAMIEYIMRNIKAKTLFSTHYHELTEMAEKNAGI 734
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H+ + + D ++ FLYR+ G +SYG+ VA +A +P V+E A
Sbjct: 735 RNVHV---------DVHEEDDKVTFLYRVLDGKADKSYGINVARLAHLPSSVLERA 781
Score = 106 bits (264), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 177/406 (43%), Gaps = 72/406 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
K Y +K Q+ D ++F+++G FYE++ DA+ ELD +T G +V GI
Sbjct: 12 KHYLELKEQHEDAIIFYRLGDFYEMFFEDAKTASSELDLVLTGRNAGVEERVPMCGIPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD-A 390
+++L+ +GYKV +EQLE AK ++ R ++ +VTP T +D
Sbjct: 72 AAKGYIQRLIQKGYKVAIVEQLEDPALAKG-----LVKRDVIKIVTPGTIMDEVSDEKTT 126
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V++ ++ + +G A + C + D A+ +L+ + +E++
Sbjct: 127 VYIASLHDFQ---------FGLAVILCEMTTGELRAQLIDKHVMAIQKVLLGNNVREIVI 177
Query: 451 ENR------GLCKEAQKALRKFSAGSAALE-------------LTPAMAV-TDFLDASEV 490
+ + + +E Q + +A E + A V T++LD ++
Sbjct: 178 QEKFDKKIVKMIEEMQTITVSYHNDNALKEEYRHLLNGIEDDRVETAFGVLTNYLDETQK 237
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
+ + LN A+E V ++D L S L L LR+
Sbjct: 238 RNMAHLN------------AVEMVYENDF----LQMDFSTKQNLELTSSLRSNS------ 275
Query: 551 YRDCLRMDGQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
QTL +LD C +S G RLL+ WI +PL D IN RLD VEYL N
Sbjct: 276 -------RSQTLWSFLDKCRSSMGSRLLKKWIEYPLVDTAMINRRLDAVEYLNDNFITKD 328
Query: 609 VVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVF 654
+ ++L + D+ERL RV A A+ +L LI K L+ ++F
Sbjct: 329 ELREHLGFVYDMERLSARV-AYGSANPRDILRLI--KTLEHTPQIF 371
>gi|367047841|ref|XP_003654300.1| hypothetical protein THITE_2117183 [Thielavia terrestris NRRL 8126]
gi|347001563|gb|AEO67964.1| hypothetical protein THITE_2117183 [Thielavia terrestris NRRL 8126]
Length = 925
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 171/299 (57%), Gaps = 19/299 (6%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L+ + A+ +S V+ ++ + DV+ +FA + + + RP I P+ +
Sbjct: 563 TQSGLVNEVVSVAASYSPVLERLAGVLAHLDVIVAFAHCSVHAPISYVRPKIHPRGEGQT 622
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
+ ++ P +++ ++ + ND+ L D L ++TGPNMGGKST
Sbjct: 623 ILREARHPCMEM----------QDDVQFITNDVELTRDKSSFL----IITGPNMGGKSTY 668
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R + ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+
Sbjct: 669 IRQIGVIALMAQIGCFVPCSEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKS 728
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT +SL+I+DELGRGTST+DG+ +A+A+ +V+ I C LFATH+H LT +P V
Sbjct: 729 ATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPQVR 788
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ A +++ SK +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 789 NLHV-TAHIGGADSKSKARREVTLLYKVEPGVCDQSFGIHVAELVRFPDKVVRMAKRKA 846
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T G RLL W+ PL D + I R +VE + ++E+ + ++LR +PDL R
Sbjct: 319 LNHCKTPVGSRLLAQWLKQPLMDKDEIEKRQQLVEAFVNDTELRQTMQEEHLRSIPDLYR 378
Query: 623 LLGRVK 628
L R +
Sbjct: 379 LAKRFQ 384
>gi|445443234|ref|ZP_21442569.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-92]
gi|444762805|gb|ELW87157.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-92]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 165/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N FA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---ISFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDTNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL + H + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDPITRH-NLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC T+ G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-------------QTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|346314847|ref|ZP_08856364.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium
2_2_44A]
gi|345905785|gb|EGX75522.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium
2_2_44A]
Length = 843
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 29/296 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+AE + L+ + ++ HA++ ID L +A+ S RP
Sbjct: 514 LEAELFNHLLNQIKVYLPKLHDLSHALATIDAL--YALAEISSENGYTRP---------- 561
Query: 782 VRQDNGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
Q + G + +K HP V ND+ +GED+D L++TGPNMGGKST
Sbjct: 562 --QFHTGHSIHMKEARHPILDRMMKTTRYVSNDLEMGEDND-----ILMITGPNMGGKST 614
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T L VI+AQ+GCFVP + + + D IFTR+GA+D IM+G+STF+VE E + LQ
Sbjct: 615 YMRQTVLLVIMAQIGCFVPAKKAEMPIFDQIFTRIGASDDIMSGQSTFMVEMIEANNALQ 674
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT +SL++ DE+GRGTST+DG A+A A+ ++ I + LF+THYH LT+ + +
Sbjct: 675 NATANSLILFDEIGRGTSTYDGMALAQAMIEYIMRNIKAKTLFSTHYHELTEMAEKNAGI 734
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H+ + + D ++ FLYR+ G +SYG+ VA +A +P V+E A
Sbjct: 735 RNVHV---------DVHEEDDKVTFLYRVLDGKADKSYGINVARLAHLPSSVLERA 781
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 177/406 (43%), Gaps = 72/406 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
K Y +K Q+ D ++F+++G FYE++ DA+ ELD +T G +V GI
Sbjct: 12 KHYLELKEQHEDAIIFYRLGDFYEMFFEDAKTASSELDLVLTGRNAGVEERVPMCGIPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD-A 390
+++L+ +GYKV +EQLE AK ++ R ++ +VTP T +D
Sbjct: 72 AAKGYIQRLIQKGYKVAIVEQLEDPALAKG-----LVKRDVIKIVTPGTIMDEVSDEKTT 126
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V++ ++ + +G A + C + D A+ +L+ + +E++
Sbjct: 127 VYIASLHDFK---------FGLAVILCEMTTGELRAQLIDKHVMAIQKVLLGNNVREIVI 177
Query: 451 ENR------GLCKEAQKALRKFSAGSAALE-------------LTPAMAV-TDFLDASEV 490
+ + + +E Q + +A E + A V T++LD ++
Sbjct: 178 QEKFDKKIVKMIEEMQTITVSYHNDNALKEEYRHLLNGIEDDRVETAFGVLTNYLDETQK 237
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
+ + LN A+E V ++D L S L L LR+
Sbjct: 238 RNMAHLN------------AVEMVYENDF----LQMDFSTKQNLELTSSLRSNS------ 275
Query: 551 YRDCLRMDGQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
QTL +LD C +S G RLL+ WI +PL D IN RL+ VEYL N
Sbjct: 276 -------RSQTLWSFLDKCRSSMGSRLLKKWIEYPLVDTAMINRRLNAVEYLNDNFITKD 328
Query: 609 VVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVF 654
+ ++L + D+ERL RV A A+ +L LI K L+ ++F
Sbjct: 329 ELREHLGFVYDMERLSARV-AYGSANPRDILRLI--KTLEHTPQIF 371
>gi|239503730|ref|ZP_04663040.1| DNA mismatch repair protein [Acinetobacter baumannii AB900]
gi|421678917|ref|ZP_16118799.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC111]
gi|410391840|gb|EKP44204.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC111]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
MV L+++ D+ER+L RV
Sbjct: 348 RMV----LKEIGDIERVLSRV 364
>gi|425058567|ref|ZP_18461945.1| DNA mismatch repair protein MutS [Enterococcus faecium 504]
gi|403038160|gb|EJY49393.1| DNA mismatch repair protein MutS [Enterococcus faecium 504]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 199/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVEDT-----KTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNESSAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|421788729|ref|ZP_16225009.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-82]
gi|410401288|gb|EKP53438.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-82]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E + + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSTQVIEKV 842
Score = 66.6 bits (161), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 168/383 (43%), Gaps = 66/383 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHL 393
+ E +AR K GR + EQ + RK+V ++TP GT+ DA+ L
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTP-----GTLTEDAL-L 127
Query: 394 LAIKEGN----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ + N C N GFA +D +A V D L L ++ P E++
Sbjct: 128 TSYQSSNLVALCIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEIL 182
Query: 450 YE----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----A 487
+ + + ++ +K L F+ +A L +V+ LD
Sbjct: 183 IDEDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAK 242
Query: 488 SEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILP 547
+ L+ ++ P +++ +++ F AL I+ + +++ + +G L
Sbjct: 243 AAAAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL- 298
Query: 548 YKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NS 604
+++ DC QT + G RLL + P++D ++ RLD +E L++ S
Sbjct: 299 FQLVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHES 345
Query: 605 EVVMVVAQYLRKLPDLERLLGRV 627
V MV L+++ D+ER+L RV
Sbjct: 346 PVRMV----LKEIGDIERVLSRV 364
>gi|254479232|ref|ZP_05092577.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM
12653]
gi|214034833|gb|EEB75562.1| DNA mismatch repair protein MutS [Carboxydibrachium pacificum DSM
12653]
Length = 866
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/335 (34%), Positives = 179/335 (53%), Gaps = 41/335 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ + + + IK HP +
Sbjct: 551 IAIIDVLISFAEVAETNKYV--KPIVDYEDR------------IVIKEGRHPVVETISDE 596
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+GCFVP + +
Sbjct: 597 GFVANDIDIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQVGCFVPASYARIGI 651
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L AT SL+ILDE+GRGTST+DG +IA
Sbjct: 652 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSLIILDEVGRGTSTYDGMSIAQ 711
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL+
Sbjct: 712 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKLRGVRNFNVSVEEREDDIIFLH 762
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSE-------- 1039
++ G SYG+QV+ +AG+P ++E A A++K + E S+
Sbjct: 763 KIVPGGSDRSYGIQVSKLAGLPYSIIERAKEILEALEKDKAVKNELEEAVSQFAFTQMDI 822
Query: 1040 FSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLW 1074
FSS + ++ I N C+ D+ L L+
Sbjct: 823 FSSAKDALIEEIAN-----CDPDNMTPLQALIYLY 852
Score = 110 bits (276), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 169/385 (43%), Gaps = 67/385 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KLV +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLVKKGYKVAICEQLEDPSKAKG-----LVKRDVVRIYTPGTI----INPESM 118
Query: 392 ------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+L+++ DN YG VD ++ I + + + + SP
Sbjct: 119 DEKSNNYLVSVYREK---DN----YGICAVDVTTGELYATEIKNCKDGKRIYDEIAKYSP 171
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E+I N K K ++ F + A+ A ++ +SE+
Sbjct: 172 SEII-SNEEFLKN-NKYIKVFKNNNCAVN---AYKPLNYEASSEL------------IEK 214
Query: 506 PWSKALENVMQHDIGF--SALGGLISHLSRLM--------------------LD-DVLRN 542
+ K +E + D F +LG L+S+L L LD + +RN
Sbjct: 215 QFDKKVEELELEDKKFVIHSLGALLSYLKELQKTSLKHINKLTLYQDNSYMGLDSNAIRN 274
Query: 543 GDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
+IL R+ + LD VT G RLL+ W+ PL D + I RLD VE L
Sbjct: 275 LEILESN--RNKSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDEIEKRLDAVEELFN 332
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
N + + + L K+ DLERL ++
Sbjct: 333 NYRERIELKELLNKVYDLERLASKI 357
>gi|340924203|gb|EGS19106.1| hypothetical protein CTHT_0057300 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1151
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 158/286 (55%), Gaps = 25/286 (8%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ + +++ ID L S + AS+ +P LP P + G HP A
Sbjct: 842 DAVASLATIDCLLSLSQVASLP--GYTKPTFLPPGTPPTITITQG---------RHPIAE 890
Query: 803 GE--NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
+G +P + P L+TGPNMGGKS+ +RA L V+LAQ+G FVP
Sbjct: 891 HTLPDGYIPFTTSL------TSPAPIAQLITGPNMGGKSSYVRAVALLVLLAQIGSFVPA 944
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ L+L D I+TR+GA D + GESTF+VE +ETA++L+ AT SLVILDELGRGTST
Sbjct: 945 DAMSLTLTDAIYTRMGARDNLFAGESTFMVEVSETATILRSATPRSLVILDELGRGTSTH 1004
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ--HMACAFKSNSENYSK 978
DG AIA+AV +V C LF THY L + A ++ HM + +N E
Sbjct: 1005 DGAAIAHAVLDHVVRETKCLTLFITHYQSLARVAAGLGDGLIKCVHMRFSATTNEE---- 1060
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
G++E+ FLY + G SYGL VA +A +P+KV++ A+ + M+
Sbjct: 1061 GEEEITFLYEVADGVAHRSYGLNVARLARIPRKVLDVAAQKSREME 1106
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 112/419 (26%), Positives = 173/419 (41%), Gaps = 62/419 (14%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWK 314
A K++ + Q+ +K ++MD +L +VG + + DA I KEL D
Sbjct: 233 AKSKLTPMEIQFLEIKRKHMDTILIVEVGYKFRFFGEDARIAAKELSIVCIPGKLRYDEH 292
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLV 373
+ + + + I ++ V++LVA G+KVG + Q+ET+ KA + N+ RKL
Sbjct: 293 PSEAHLDRFASASIPVHRLNVHVKRLVAAGHKVGIVRQIETAALKKAGDNRNAPFVRKLT 352
Query: 374 NVVTPSTTVDGT---------IGPDAV-HLLAIKEG---NCGPDNGSVVYGFAFVDCAAL 420
NV T T +D T G A +LL + E G D V G V A
Sbjct: 353 NVYTKGTYIDETGELDQPGEATGASAGGYLLCLTESPAKGLGTDE-KVDVGLIAVQPATG 411
Query: 421 RVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-------AAL 473
+ + D + L+ +SP E + L K K ++ S S + +
Sbjct: 412 DIIYDSFEDGFMRREIETRLLHISPCEFLIVGE-LSKATDKLIQHLSGSSTNVFGDKSRV 470
Query: 474 ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKAL-ENVMQHDIGFS-ALGGLISHL 531
E P + + A + Q P S AL E V++ + L +I+HL
Sbjct: 471 ERVPK---GNTMAAEAYSHVTQFYASKTNEKDPKSAALLEKVLKLPESVTICLSAMITHL 527
Query: 532 SRLMLDDV----------------LRNGDIL-PYKVYRDCL--RMDGQTLY-LDSCVTSS 571
+ L+ + L NG L +VYR+ G L+ LD T
Sbjct: 528 TEYGLEHIFALTKYFQSFSTRQHMLLNGTTLESLEVYRNATDHSEKGSLLWALDKTQTRP 587
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKL-PDLERLLGRV 627
G+RLLR WI PL D E + R++ VE L++N V + L + DLER L R+
Sbjct: 588 GRRLLRKWIGRPLLDHEQLQERVEAVEELLENQNTYKVDKLTNMLSNIKADLERSLIRI 646
>gi|257885710|ref|ZP_05665363.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501]
gi|257821566|gb|EEV48696.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501]
Length = 881
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|451848741|gb|EMD62046.1| hypothetical protein COCSADRAFT_147401 [Cochliobolus sativus ND90Pr]
Length = 1144
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 160/298 (53%), Gaps = 23/298 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E K Q + I +++ +D L S A A+ P P D
Sbjct: 836 LLEEISSKYQQLRDCIASLATLDALLSLATLANQ-----------PGYVKPTFTDDIQ-- 882
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ I G HP VPND+ L DS R LL+TGPNMGGKS+ +R+ L
Sbjct: 883 -INITGGRHPMVEQLLLDSYVPNDLSLSHDST----RALLVTGPNMGGKSSFVRSAALIA 937
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+ Q+G +VP L + D +FTR+GA D ++ GESTF+VE ET+ +L+ AT SLVI
Sbjct: 938 IMGQIGSYVPANEARLGMLDAVFTRMGAFDNMLKGESTFMVELNETSDILKSATPRSLVI 997
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTSTFDG AIA AV ++ + LF THY L + + P L+++ F
Sbjct: 998 LDELGRGTSTFDGVAIAEAVLDYVIRDLQSLTLFITHYQHLARVPSRFPDGQLKNVHMRF 1057
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ + G +E+VFLY T G SYGL VA +A VP KV++ A + +++S+
Sbjct: 1058 EEQN-----GGREVVFLYEATEGISHRSYGLNVARLARVPDKVIDVAEVKSAELEQSM 1110
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/435 (22%), Positives = 164/435 (37%), Gaps = 80/435 (18%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + QY ++K +++D ++ +VG Y+ + DA I KEL D +
Sbjct: 236 KLTPMEIQYLDIKRKHLDTIIVMEVGYKYKFFGEDARIASKELGIVCIPGKFRYDEHPSE 295
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + K + V++LV +KVG + Q+ET+ +A + N+ RKL N+
Sbjct: 296 AHLDKFASASFPTHRLQVHVKRLVQANHKVGVVRQVETAALKAAGNNRNAPFVRKLTNLY 355
Query: 377 TPSTTVD------------GTIGPDAVHLLAIKEGNC---GPDNGSVVYGFAFVDCAALR 421
T T VD G +LL I E N G D V G V A
Sbjct: 356 TKGTYVDDVEGLETPTEGSGASAQSTGYLLCITESNAKGWGTDE-KVQVGLVAVQPATGD 414
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAV 481
+ D + + L+ ++P E + L K K + SA +
Sbjct: 415 IIYDDFEDGFMRSEIETRLLHIAPAEFLVVG-DLSKATNKLIEHLSASKTNV-------- 465
Query: 482 TDFLDASEVKKLVQ-----------LNGYFNGS--------SSPWSKALENVMQHDIGFS 522
F D S V+++ + ++ ++ G S L+ V Q +
Sbjct: 466 --FGDRSRVERVEKPKTMAAQAHSHISNFYAGKMKSSTDADSEKQGAVLDKVHQLSEHVT 523
Query: 523 A-LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------------------- 562
L +I++LS L+ V R + ++G TL
Sbjct: 524 ICLSAMITYLSEYGLEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDYTSKGSLF 583
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLE 621
++ T G+RLLR W+ PL D + R+ VE L K E + V + L +++
Sbjct: 584 WTMNRTKTRFGQRLLRKWVGRPLIDKVKLEERIAAVEEL-KEGEHTIPVDKLKFVLGEIK 642
Query: 622 RLLGRVKARVQASSC 636
L +V R+ C
Sbjct: 643 TDLEKVLIRIYYKKC 657
>gi|430850781|ref|ZP_19468538.1| DNA mismatch repair protein mutS [Enterococcus faecium E1185]
gi|430535140|gb|ELA75563.1| DNA mismatch repair protein mutS [Enterococcus faecium E1185]
Length = 881
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNESSAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|313900811|ref|ZP_07834301.1| DNA mismatch repair protein MutS [Clostridium sp. HGF2]
gi|312954231|gb|EFR35909.1| DNA mismatch repair protein MutS [Clostridium sp. HGF2]
Length = 843
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 29/296 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+AE + L+ + ++ HA++ ID L +A+ S RP
Sbjct: 514 LEAELFNHLLNQIKVYLPKLHDLSHALATIDAL--YALAEISSENGYTRP---------- 561
Query: 782 VRQDNGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
Q + G + +K HP V ND+ +GED+D L++TGPNMGGKST
Sbjct: 562 --QFHTGHSIHMKEARHPILDRMMKTTRYVSNDLEMGEDND-----ILMITGPNMGGKST 614
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T L VI+AQ+GCFVP + + + D IFTR+GA+D IM+G+STF+VE E + LQ
Sbjct: 615 YMRQTVLLVIMAQIGCFVPAKKAEMPIFDQIFTRIGASDDIMSGQSTFMVEMIEANNALQ 674
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT +SL++ DE+GRGTST+DG A+A A+ ++ I + LF+THYH LT+ + +
Sbjct: 675 NATANSLILFDEIGRGTSTYDGMALAQAMIEYIMRNIKAKTLFSTHYHELTEMAEKNAGI 734
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H+ + + D ++ FLYR+ G +SYG+ VA +A +P V+E A
Sbjct: 735 RNVHV---------DVHEEDDKVTFLYRVLDGKADKSYGINVARLAHLPSSVLERA 781
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 177/406 (43%), Gaps = 72/406 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
K Y +K Q+ D ++F+++G FYE++ DA+ ELD +T G +V GI
Sbjct: 12 KHYLELKEQHEDAIIFYRLGDFYEMFFEDAKTASSELDLVLTGRNAGVEERVPMCGIPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD-A 390
+++L+ +GYKV +EQLE AK ++ R ++ +VTP T +D
Sbjct: 72 AAKGYIQRLIQKGYKVAIVEQLEDPALAKG-----LVKRDVIKIVTPGTIMDEVSDEKTT 126
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V++ ++ + +G A + C + D A+ +L+ + +E++
Sbjct: 127 VYIASLHDFQ---------FGLAVILCEMTTGELRAQLIDKHVMAIQKVLLGNNVREIVI 177
Query: 451 ENR------GLCKEAQKALRKFSAGSAALE-------------LTPAMAV-TDFLDASEV 490
+ + + +E Q F +A E + A V T++LD ++
Sbjct: 178 QEKFDKKIVKMIEEMQTITVSFHNDNALKEEYRHLLNGIEDDRVETAFGVLTNYLDETQK 237
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
+ + LN A+E V ++D L S L L LR+
Sbjct: 238 RNMAHLN------------AVEMVYENDF----LQMDFSTKQNLELTSSLRSNS------ 275
Query: 551 YRDCLRMDGQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
QTL +LD C +S G RLL+ WI +PL D IN RLD VEYL N
Sbjct: 276 -------RSQTLWSFLDKCRSSMGSRLLKKWIEYPLVDTAMINRRLDAVEYLNDNFITKD 328
Query: 609 VVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVF 654
+ ++L + D+ERL RV A A+ +L LI K L+ ++F
Sbjct: 329 ELREHLGFVYDMERLSARV-AYGSANPRDILRLI--KTLEHTPQIF 371
>gi|349581080|dbj|GAA26238.1| K7_Msh2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 964
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERKTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|169796507|ref|YP_001714300.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AYE]
gi|184157560|ref|YP_001845899.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ACICU]
gi|213156380|ref|YP_002318800.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB0057]
gi|215483970|ref|YP_002326195.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB307-0294]
gi|301347835|ref|ZP_07228576.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB056]
gi|301511666|ref|ZP_07236903.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB058]
gi|301597647|ref|ZP_07242655.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB059]
gi|332855545|ref|ZP_08435931.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013150]
gi|332870218|ref|ZP_08439113.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013113]
gi|332874294|ref|ZP_08442213.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6014059]
gi|384131654|ref|YP_005514266.1| mutS [Acinetobacter baumannii 1656-2]
gi|384142646|ref|YP_005525356.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii MDR-ZJ06]
gi|385236974|ref|YP_005798313.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
TCDC-AB0715]
gi|387124475|ref|YP_006290357.1| DNA mismatch repair protein MutS [Acinetobacter baumannii MDR-TJ]
gi|407932298|ref|YP_006847941.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii TYTH-1]
gi|416148480|ref|ZP_11602391.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB210]
gi|417568718|ref|ZP_12219581.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC189]
gi|417572857|ref|ZP_12223711.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada
BC-5]
gi|417578901|ref|ZP_12229734.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-17]
gi|417869490|ref|ZP_12514475.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH1]
gi|417872944|ref|ZP_12517827.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH2]
gi|417878928|ref|ZP_12523521.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH3]
gi|417881928|ref|ZP_12526237.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH4]
gi|421203727|ref|ZP_15660862.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC12]
gi|421533818|ref|ZP_15980098.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC30]
gi|421622154|ref|ZP_16063062.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC074]
gi|421624043|ref|ZP_16064921.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC098]
gi|421629205|ref|ZP_16069945.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC180]
gi|421644124|ref|ZP_16084609.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-235]
gi|421648275|ref|ZP_16088682.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-251]
gi|421657664|ref|ZP_16097914.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-83]
gi|421686952|ref|ZP_16126688.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-143]
gi|421700500|ref|ZP_16140014.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-58]
gi|421703097|ref|ZP_16142564.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1122]
gi|421706817|ref|ZP_16146220.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1219]
gi|421790893|ref|ZP_16227083.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-2]
gi|421797767|ref|ZP_16233803.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-21]
gi|421799725|ref|ZP_16235715.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada BC1]
gi|424052903|ref|ZP_17790435.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab11111]
gi|424064394|ref|ZP_17801879.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab44444]
gi|425755144|ref|ZP_18872966.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-113]
gi|445464161|ref|ZP_21449544.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC338]
gi|445481102|ref|ZP_21455764.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-78]
gi|226723048|sp|B7GW85.1|MUTS_ACIB3 RecName: Full=DNA mismatch repair protein MutS
gi|226723049|sp|B7IBV9.1|MUTS_ACIB5 RecName: Full=DNA mismatch repair protein MutS
gi|238688089|sp|B0VAU7.1|MUTS_ACIBY RecName: Full=DNA mismatch repair protein MutS
gi|238690992|sp|B2HX50.1|MUTS_ACIBC RecName: Full=DNA mismatch repair protein MutS
gi|169149434|emb|CAM87320.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii AYE]
gi|183209154|gb|ACC56552.1| Mismatch repair ATPase (MutS family) [Acinetobacter baumannii ACICU]
gi|213055540|gb|ACJ40442.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB0057]
gi|213985940|gb|ACJ56239.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB307-0294]
gi|322507874|gb|ADX03328.1| mutS [Acinetobacter baumannii 1656-2]
gi|323517471|gb|ADX91852.1| DNA mismatch repair protein MutS [Acinetobacter baumannii
TCDC-AB0715]
gi|332727402|gb|EGJ58834.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013150]
gi|332732385|gb|EGJ63642.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6013113]
gi|332737519|gb|EGJ68427.1| DNA mismatch repair protein MutS [Acinetobacter baumannii 6014059]
gi|333365001|gb|EGK47015.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AB210]
gi|342230353|gb|EGT95193.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH1]
gi|342230878|gb|EGT95701.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH3]
gi|342232749|gb|EGT97520.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH2]
gi|342238460|gb|EGU02892.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ABNIH4]
gi|347593140|gb|AEP05861.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii MDR-ZJ06]
gi|385878967|gb|AFI96062.1| DNA mismatch repair protein MutS [Acinetobacter baumannii MDR-TJ]
gi|395555013|gb|EJG21015.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC189]
gi|395568039|gb|EJG28713.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-17]
gi|398326771|gb|EJN42914.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC12]
gi|400208425|gb|EJO39395.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada
BC-5]
gi|404566416|gb|EKA71562.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-143]
gi|404570031|gb|EKA75114.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-58]
gi|404670981|gb|EKB38850.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab11111]
gi|404673130|gb|EKB40929.1| DNA mismatch repair protein mutS [Acinetobacter baumannii Ab44444]
gi|407192933|gb|EKE64106.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1122]
gi|407193216|gb|EKE64384.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ZWS1219]
gi|407900879|gb|AFU37710.1| methyl-directed mismatch repair, recognize exocyclic adducts of
guanosine [Acinetobacter baumannii TYTH-1]
gi|408505935|gb|EKK07651.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-235]
gi|408515636|gb|EKK17219.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-251]
gi|408696411|gb|EKL41950.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC074]
gi|408702555|gb|EKL47965.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC098]
gi|408702919|gb|EKL48326.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC180]
gi|408711650|gb|EKL56851.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-83]
gi|409988271|gb|EKO44444.1| DNA mismatch repair protein MutS [Acinetobacter baumannii AC30]
gi|410395961|gb|EKP48246.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-21]
gi|410404311|gb|EKP56379.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-2]
gi|410409266|gb|EKP61199.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Canada BC1]
gi|425495186|gb|EKU61375.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-113]
gi|444770788|gb|ELW94930.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-78]
gi|444780057|gb|ELX04029.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC338]
Length = 881
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
>gi|77164436|ref|YP_342961.1| DNA mismatch repair protein MutS [Nitrosococcus oceani ATCC 19707]
gi|115299211|sp|Q3JCL5.1|MUTS_NITOC RecName: Full=DNA mismatch repair protein MutS
gi|76882750|gb|ABA57431.1| DNA mismatch repair protein MutS [Nitrosococcus oceani ATCC 19707]
Length = 863
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 163/297 (54%), Gaps = 28/297 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E F+E +A++ +DVL + A A PL+ S P + + G
Sbjct: 537 LLEQFMEPLPALRACANALAELDVLHNLAERAKTLEYVA--PLL---SDQPGIFIERGRH 591
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L PF VPND+ L E R L++TGPNMGGKST +R T L V
Sbjct: 592 PVVEQTLEDPF---------VPNDLTLHEAR-----RMLIITGPNMGGKSTYMRQTALIV 637
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA +G FVP V+ D IFTR+GA D + G STF+VE TETA++L AT+ SLV+
Sbjct: 638 LLAHIGSFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVL 697
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDE+GRGTSTFDG ++A+AV L ++ LFATHY LT P V H+
Sbjct: 698 LDEVGRGTSTFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTA-- 755
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
++ + +VFL+ + G +SYGLQVA +AGVPQ+++ A + ++ +
Sbjct: 756 -------TEHKEHIVFLHAVKEGPASQSYGLQVAALAGVPQEIIAQARQQLMELENN 805
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 164/387 (42%), Gaps = 56/387 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
K + +QY +K++Y + LL +++G FYEL+ DA+ + LD +T G +
Sbjct: 8 KPHTPMMQQYLRIKAEYPNTLLLYRMGDFYELFYDDAQRASELLDIALTSRGRSAGEPIP 67
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVD 383
GI +D + +LV +G V EQ+ +K + R++V ++TP T T +
Sbjct: 68 MAGIPYHALDSYLARLVRQGESVAICEQIGNPAASKG-----PVERQVVRIITPGTVTEE 122
Query: 384 GTIGPDAVHLLAI--KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ +LLA KEG+ V+GFA +D + R I + AS +A + L
Sbjct: 123 ALLEARRDNLLAALQKEGD--------VFGFAVLDLCSGRF---NILEVASESAATSELA 171
Query: 442 QVSPKE-VIYENRGLC---KEAQKALRK-----FSAGSAALELTPAMAVTDF--LDASEV 490
++ P E ++ E+ L + + +R F SA +L D E+
Sbjct: 172 RIRPAELLVSEDLALILVDSKTEAVVRPLPPWYFDRESAQRQLCRQFGTQDLAGFGCEEM 231
Query: 491 KKLVQLNG----YFNGSSS---PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNG 543
K + G Y + P AL+ Q + ++LD R
Sbjct: 232 KTAIAAAGCLLHYVQDTQRTQFPHIHALQVERQE--------------TSIILDPSTRRN 277
Query: 544 DILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
L + D R + LD T+ G RLLR ++ PL+D + R + L++
Sbjct: 278 LELEESLSGDSGR-NTLIAVLDHTATAMGSRLLRRYLHRPLRDQTLLKQRQQALATLLEG 336
Query: 604 SEVVMVVAQYLRKLPDLERLLGRVKAR 630
+ V+ LR + D+ER+L RV R
Sbjct: 337 G-LSDVLQTLLRGIGDIERILSRVALR 362
>gi|408789864|ref|ZP_11201505.1| DNA mismatch repair protein MutS [Lactobacillus florum 2F]
gi|408520886|gb|EKK20908.1| DNA mismatch repair protein MutS [Lactobacillus florum 2F]
Length = 856
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 157/273 (57%), Gaps = 31/273 (11%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
A+S +DVL+SFA + A RP Q N L+I HP G
Sbjct: 535 AVSELDVLQSFATISEQHQFA--RP------------QFNDQETLQINNGRHPVVEEVLG 580
Query: 807 GLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
VPND+++G ++ LL+TGPNM GKST +R L VILAQ+GCFVP E L
Sbjct: 581 AQQYVPNDVVMGPET-----AILLITGPNMSGKSTYMRQLALIVILAQVGCFVPAETATL 635
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
+ D +FTR+GA D +++G+STF+VE E +Q AT+ SL++ DELGRGTST+DG A+
Sbjct: 636 PIFDQVFTRIGAADDLISGKSTFMVEMKEANQAIQLATRHSLILFDELGRGTSTYDGVAL 695
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASH-PHVTLQHMACAFKSNSENYSKGDQELV 984
A A+ + ++ + LF+THYH LT + A+H P + H+ K D +LV
Sbjct: 696 AQAIIEYIHNHVHAKTLFSTHYHELT-DLANHLPQLQNVHVGAVEK---------DDQLV 745
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
FL+++ G +SYG+ VA +AG+P +++ A
Sbjct: 746 FLHKILPGPADKSYGINVAKLAGLPSPLLQRAQ 778
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 271 SASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---G 327
+A QY +K QY D LF+++G FYEL+ DA G + L+ +T + G
Sbjct: 5 TAMMAQYQKIKDQYPDAFLFYRIGDFYELFNDDAVKGAQLLELTLTARNHNAEHPIPMCG 64
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
+ ++ LV +GYKV EQLE +QA+ ++ R +V V+TP T ++
Sbjct: 65 VPHQSAQTYIDVLVDKGYKVALCEQLEDPKQAQG-----MVKRAVVQVITPGTQLE 115
>gi|419718740|ref|ZP_14246046.1| DNA mismatch repair protein MutS [Lachnoanaerobaculum saburreum
F0468]
gi|383305080|gb|EIC96459.1| DNA mismatch repair protein MutS [Lachnoanaerobaculum saburreum
F0468]
Length = 880
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 184/322 (57%), Gaps = 43/322 (13%)
Query: 784 QDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
Q N V+ IK HP LG++ + ND L ++ R ++TGPNM GKST
Sbjct: 574 QINTNGVIDIKDGRHPVVESMLGDDSF--IANDTYLDQNK----KRMSIITGPNMAGKST 627
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T L ++AQ+G FVP L + D IFTR+GA+D + +G+STF+VE TE A++L+
Sbjct: 628 YMRQTALICMMAQIGSFVPASQASLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANILR 687
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHP 958
AT++SLVILDE+GRGTSTFDG AIA+AV + ++ I + LFATHYH L++ + P
Sbjct: 688 NATRNSLVILDEIGRGTSTFDGLAIAWAVVEHISNIKLIGAKTLFATHYHELSELEGTLP 747
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-- 1016
V + K +N +VFL ++ +G +SYG+QVA +AGVP+ V E A
Sbjct: 748 GV--NNYCILVKERGDN-------IVFLRKIVTGGADKSYGIQVAKLAGVPESVTERAKE 798
Query: 1017 -----SHAALAMK-KSIGESFKS------------SEQRSEFSSLHEEWLKTIVNVSRVD 1058
S A +A + + I E+ S S Q S F +++ + + I +S++D
Sbjct: 799 LIEELSGADIATRAREIAEAAVSKRKPVKRPDEVESGQLSLFDAVNNDSI--IEEISKID 856
Query: 1059 CNS-DDDDAYDTLFCLWHELKN 1079
S DA +TL+ L +++KN
Sbjct: 857 ITSMTPMDALNTLYALQNKIKN 878
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
+S +Y K++Y D +LF+++G FYE++ DA + KEL+ +T G +
Sbjct: 3 LSPMMSKYLETKNEYPDCILFYRLGDFYEMFFDDATMVAKELELTLTGKDCGLKERAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGT 385
G+ + + +LV G+KV EQ+E + AK ++ R++V +VTP T T G
Sbjct: 63 GVPYHAAETYINRLVQNGHKVAIAEQMEDPKLAKG-----LVKREVVRIVTPGTITSSGV 117
Query: 386 IGPD 389
+ D
Sbjct: 118 LADD 121
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G R+LRS++ PL + E I NR + V L + + +YL + DLERL
Sbjct: 295 LDKTSTAMGARMLRSFLEQPLINRERILNRQEAVAELFERYIDREELREYLNPVYDLERL 354
Query: 624 LGRV 627
+ RV
Sbjct: 355 MARV 358
>gi|69248279|ref|ZP_00604703.1| MutS 1 protein [Enterococcus faecium DO]
gi|257878801|ref|ZP_05658454.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933]
gi|257881439|ref|ZP_05661092.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502]
gi|257890660|ref|ZP_05670313.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410]
gi|261207074|ref|ZP_05921763.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6]
gi|289565924|ref|ZP_06446364.1| DNA mismatch repair protein MutS [Enterococcus faecium D344SRF]
gi|293563776|ref|ZP_06678215.1| DNA mismatch repair protein MutS [Enterococcus faecium E1162]
gi|294614622|ref|ZP_06694526.1| DNA mismatch repair protein MutS [Enterococcus faecium E1636]
gi|294621199|ref|ZP_06700384.1| DNA mismatch repair protein MutS [Enterococcus faecium U0317]
gi|314938825|ref|ZP_07846096.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a04]
gi|314943631|ref|ZP_07850385.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133C]
gi|314948710|ref|ZP_07852083.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0082]
gi|314952160|ref|ZP_07855178.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133A]
gi|314991866|ref|ZP_07857323.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133B]
gi|314996579|ref|ZP_07861614.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a01]
gi|383327496|ref|YP_005353380.1| DNA mismatch repair protein MutS [Enterococcus faecium Aus0004]
gi|389867318|ref|YP_006374741.1| DNA mismatch repair protein MutS [Enterococcus faecium DO]
gi|415891069|ref|ZP_11549654.1| DNA mismatch repair protein MutS [Enterococcus faecium E4453]
gi|424802623|ref|ZP_18228109.1| DNA mismatch repair protein MutS [Enterococcus faecium S447]
gi|424827507|ref|ZP_18252302.1| DNA mismatch repair protein MutS [Enterococcus faecium R501]
gi|424857781|ref|ZP_18281880.1| DNA mismatch repair protein MutS [Enterococcus faecium R499]
gi|424868969|ref|ZP_18292694.1| DNA mismatch repair protein MutS [Enterococcus faecium R497]
gi|424950343|ref|ZP_18365511.1| DNA mismatch repair protein MutS [Enterococcus faecium R496]
gi|424954585|ref|ZP_18369476.1| DNA mismatch repair protein MutS [Enterococcus faecium R494]
gi|424957683|ref|ZP_18372393.1| DNA mismatch repair protein MutS [Enterococcus faecium R446]
gi|424960856|ref|ZP_18375335.1| DNA mismatch repair protein MutS [Enterococcus faecium P1986]
gi|424967297|ref|ZP_18381002.1| DNA mismatch repair protein MutS [Enterococcus faecium P1140]
gi|424975120|ref|ZP_18388305.1| DNA mismatch repair protein MutS [Enterococcus faecium P1137]
gi|424979695|ref|ZP_18392533.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV99]
gi|424982941|ref|ZP_18395554.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV69]
gi|424986647|ref|ZP_18399055.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV38]
gi|424990665|ref|ZP_18402870.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV26]
gi|424993879|ref|ZP_18405851.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV168]
gi|424998893|ref|ZP_18410554.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV165]
gi|425000837|ref|ZP_18412383.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV161]
gi|425004325|ref|ZP_18415642.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV102]
gi|425006966|ref|ZP_18418119.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV1]
gi|425012041|ref|ZP_18422892.1| DNA mismatch repair protein MutS [Enterococcus faecium E422]
gi|425012983|ref|ZP_18423736.1| DNA mismatch repair protein MutS [Enterococcus faecium E417]
gi|425019039|ref|ZP_18429427.1| DNA mismatch repair protein MutS [Enterococcus faecium C621]
gi|425021797|ref|ZP_18432022.1| DNA mismatch repair protein MutS [Enterococcus faecium C497]
gi|425023023|ref|ZP_18433165.1| DNA mismatch repair protein MutS [Enterococcus faecium C1904]
gi|425032504|ref|ZP_18437547.1| DNA mismatch repair protein MutS [Enterococcus faecium 515]
gi|425036542|ref|ZP_18441285.1| DNA mismatch repair protein MutS [Enterococcus faecium 514]
gi|425041873|ref|ZP_18446252.1| DNA mismatch repair protein MutS [Enterococcus faecium 511]
gi|425045602|ref|ZP_18449693.1| DNA mismatch repair protein MutS [Enterococcus faecium 510]
gi|425050658|ref|ZP_18454382.1| DNA mismatch repair protein MutS [Enterococcus faecium 509]
gi|425050767|ref|ZP_18454480.1| DNA mismatch repair protein MutS [Enterococcus faecium 506]
gi|430820940|ref|ZP_19439559.1| DNA mismatch repair protein mutS [Enterococcus faecium E0045]
gi|430828857|ref|ZP_19446969.1| DNA mismatch repair protein mutS [Enterococcus faecium E0269]
gi|430831899|ref|ZP_19449947.1| DNA mismatch repair protein mutS [Enterococcus faecium E0333]
gi|430847392|ref|ZP_19465230.1| DNA mismatch repair protein mutS [Enterococcus faecium E1133]
gi|430855669|ref|ZP_19473377.1| DNA mismatch repair protein mutS [Enterococcus faecium E1392]
gi|431544341|ref|ZP_19518637.1| DNA mismatch repair protein mutS [Enterococcus faecium E1731]
gi|431747155|ref|ZP_19535956.1| DNA mismatch repair protein mutS [Enterococcus faecium E2134]
gi|431749343|ref|ZP_19538085.1| DNA mismatch repair protein mutS [Enterococcus faecium E2297]
gi|431755857|ref|ZP_19544500.1| DNA mismatch repair protein mutS [Enterococcus faecium E2883]
gi|431767994|ref|ZP_19556436.1| DNA mismatch repair protein mutS [Enterococcus faecium E1321]
gi|431769501|ref|ZP_19557909.1| DNA mismatch repair protein mutS [Enterococcus faecium E1644]
gi|431773359|ref|ZP_19561684.1| DNA mismatch repair protein mutS [Enterococcus faecium E2369]
gi|431776458|ref|ZP_19564719.1| DNA mismatch repair protein mutS [Enterococcus faecium E2560]
gi|431779624|ref|ZP_19567817.1| DNA mismatch repair protein mutS [Enterococcus faecium E4389]
gi|431782570|ref|ZP_19570703.1| DNA mismatch repair protein mutS [Enterococcus faecium E6012]
gi|431784398|ref|ZP_19572437.1| DNA mismatch repair protein mutS [Enterococcus faecium E6045]
gi|35367172|gb|AAN85558.1| MutS [Enterococcus faecium]
gi|35367177|gb|AAN85560.1| MutS [Enterococcus faecium]
gi|68194464|gb|EAN08964.1| MutS 1 protein [Enterococcus faecium DO]
gi|257813029|gb|EEV41787.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933]
gi|257817097|gb|EEV44425.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502]
gi|257827020|gb|EEV53646.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410]
gi|260078702|gb|EEW66404.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6]
gi|289162297|gb|EFD10157.1| DNA mismatch repair protein MutS [Enterococcus faecium D344SRF]
gi|291592524|gb|EFF24129.1| DNA mismatch repair protein MutS [Enterococcus faecium E1636]
gi|291599195|gb|EFF30227.1| DNA mismatch repair protein MutS [Enterococcus faecium U0317]
gi|291604257|gb|EFF33752.1| DNA mismatch repair protein MutS [Enterococcus faecium E1162]
gi|313589268|gb|EFR68113.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a01]
gi|313593571|gb|EFR72416.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133B]
gi|313595692|gb|EFR74537.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133A]
gi|313597668|gb|EFR76513.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133C]
gi|313641836|gb|EFS06416.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0133a04]
gi|313644882|gb|EFS09462.1| DNA mismatch repair protein MutS [Enterococcus faecium TX0082]
gi|364094161|gb|EHM36360.1| DNA mismatch repair protein MutS [Enterococcus faecium E4453]
gi|378937190|gb|AFC62262.1| DNA mismatch repair protein MutS [Enterococcus faecium Aus0004]
gi|388532567|gb|AFK57759.1| DNA mismatch repair protein MutS [Enterococcus faecium DO]
gi|402919449|gb|EJX40048.1| DNA mismatch repair protein MutS [Enterococcus faecium S447]
gi|402923415|gb|EJX43709.1| DNA mismatch repair protein MutS [Enterococcus faecium R501]
gi|402928020|gb|EJX47926.1| DNA mismatch repair protein MutS [Enterococcus faecium R499]
gi|402933330|gb|EJX52776.1| DNA mismatch repair protein MutS [Enterococcus faecium R496]
gi|402936316|gb|EJX55502.1| DNA mismatch repair protein MutS [Enterococcus faecium R497]
gi|402936393|gb|EJX55575.1| DNA mismatch repair protein MutS [Enterococcus faecium R494]
gi|402942848|gb|EJX61399.1| DNA mismatch repair protein MutS [Enterococcus faecium R446]
gi|402945672|gb|EJX64007.1| DNA mismatch repair protein MutS [Enterococcus faecium P1986]
gi|402954652|gb|EJX72252.1| DNA mismatch repair protein MutS [Enterococcus faecium P1137]
gi|402954696|gb|EJX72293.1| DNA mismatch repair protein MutS [Enterococcus faecium P1140]
gi|402968307|gb|EJX84794.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV99]
gi|402972640|gb|EJX88827.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV69]
gi|402976003|gb|EJX91926.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV38]
gi|402979061|gb|EJX94750.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV26]
gi|402981569|gb|EJX97088.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV168]
gi|402981613|gb|EJX97129.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV165]
gi|402988352|gb|EJY03364.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV161]
gi|402989753|gb|EJY04664.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV102]
gi|402994866|gb|EJY09368.1| DNA mismatch repair protein MutS [Enterococcus faecium E422]
gi|402996021|gb|EJY10430.1| DNA mismatch repair protein MutS [Enterococcus faecium ERV1]
gi|402999560|gb|EJY13744.1| DNA mismatch repair protein MutS [Enterococcus faecium C621]
gi|403002199|gb|EJY16203.1| DNA mismatch repair protein MutS [Enterococcus faecium E417]
gi|403005224|gb|EJY18955.1| DNA mismatch repair protein MutS [Enterococcus faecium C497]
gi|403011196|gb|EJY24524.1| DNA mismatch repair protein MutS [Enterococcus faecium C1904]
gi|403012748|gb|EJY25929.1| DNA mismatch repair protein MutS [Enterococcus faecium 515]
gi|403014315|gb|EJY27329.1| DNA mismatch repair protein MutS [Enterococcus faecium 514]
gi|403022766|gb|EJY35105.1| DNA mismatch repair protein MutS [Enterococcus faecium 509]
gi|403025273|gb|EJY37362.1| DNA mismatch repair protein MutS [Enterococcus faecium 511]
gi|403026675|gb|EJY38629.1| DNA mismatch repair protein MutS [Enterococcus faecium 510]
gi|403039968|gb|EJY51076.1| DNA mismatch repair protein MutS [Enterococcus faecium 506]
gi|430438988|gb|ELA49376.1| DNA mismatch repair protein mutS [Enterococcus faecium E0045]
gi|430480540|gb|ELA57714.1| DNA mismatch repair protein mutS [Enterococcus faecium E0333]
gi|430482680|gb|ELA59791.1| DNA mismatch repair protein mutS [Enterococcus faecium E0269]
gi|430537146|gb|ELA77496.1| DNA mismatch repair protein mutS [Enterococcus faecium E1133]
gi|430546724|gb|ELA86667.1| DNA mismatch repair protein mutS [Enterococcus faecium E1392]
gi|430592453|gb|ELB30468.1| DNA mismatch repair protein mutS [Enterococcus faecium E1731]
gi|430606969|gb|ELB44300.1| DNA mismatch repair protein mutS [Enterococcus faecium E2134]
gi|430611771|gb|ELB48847.1| DNA mismatch repair protein mutS [Enterococcus faecium E2297]
gi|430616356|gb|ELB53278.1| DNA mismatch repair protein mutS [Enterococcus faecium E2883]
gi|430629895|gb|ELB66279.1| DNA mismatch repair protein mutS [Enterococcus faecium E1321]
gi|430636606|gb|ELB72670.1| DNA mismatch repair protein mutS [Enterococcus faecium E2369]
gi|430636815|gb|ELB72869.1| DNA mismatch repair protein mutS [Enterococcus faecium E1644]
gi|430640777|gb|ELB76605.1| DNA mismatch repair protein mutS [Enterococcus faecium E2560]
gi|430641725|gb|ELB77520.1| DNA mismatch repair protein mutS [Enterococcus faecium E4389]
gi|430647207|gb|ELB82655.1| DNA mismatch repair protein mutS [Enterococcus faecium E6012]
gi|430649493|gb|ELB84869.1| DNA mismatch repair protein mutS [Enterococcus faecium E6045]
Length = 881
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|401623755|gb|EJS41843.1| msh2p [Saccharomyces arboricola H-6]
Length = 964
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 172/315 (54%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P N + HP ++
Sbjct: 616 VLAHLDVISSFAHTSSYAPIPYIRPKLHPM---------NSERRTHLVSSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + ++ D+++ L
Sbjct: 783 WAIAEHIAGKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKDTNEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E+ K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTSNENLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L E+W++ +
Sbjct: 903 NIRLKALLEQWIRRV 917
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 126/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC----KEAQ 460
+G+ V G +F+D A +V + I D+ + L + L+Q+ KE + ++ L E Q
Sbjct: 152 DGNCVIGISFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTLNPNSNTEVQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGNDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LIS+L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALISYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGG 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ I R D+V+YL
Sbjct: 319 NNLAVSGFTSGGNSGKITSLFQLLNHCRTNAGVRLLNEWLKQPLTNIDQITKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ +L +PD+ RL ++ R + + KK+ + V++F S ++
Sbjct: 379 IDQIELRQMLTTDFLPMIPDIRRLTKKLNKRGGLEDVLKIYQFSKKI-PEIVQIFNSFLE 437
>gi|431208718|ref|ZP_19500931.1| DNA mismatch repair protein mutS [Enterococcus faecium E1620]
gi|430570724|gb|ELB09664.1| DNA mismatch repair protein mutS [Enterococcus faecium E1620]
Length = 881
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|293556850|ref|ZP_06675411.1| DNA mismatch repair protein MutS [Enterococcus faecium E1039]
gi|291600934|gb|EFF31225.1| DNA mismatch repair protein MutS [Enterococcus faecium E1039]
Length = 881
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFHEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNESSAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|125625247|ref|YP_001033730.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855635|ref|YP_006357879.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
NZ9000]
gi|189083180|sp|A2RP10.1|MUTS_LACLM RecName: Full=DNA mismatch repair protein MutS
gi|124494055|emb|CAL99055.1| DNA mismatch repair protein mutS [Lactococcus lactis subsp. cremoris
MG1363]
gi|300072057|gb|ADJ61457.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 840
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 183/343 (53%), Gaps = 47/343 (13%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TEGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKAT SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + E I + LFATHYH LT H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHEHIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA-------SHAALAMKKSIGESFKSSEQRS- 1038
+++T G +SYG+ VA +AG+PQ ++E A + L KK E EQ S
Sbjct: 747 HKITDGPADKSYGIHVAKIAGLPQTLLERADLILQKLENKPLPAKKVADE----QEQLSL 802
Query: 1039 -EFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
+F+ E ++ I N D+ A + L LW ELK+S
Sbjct: 803 FDFAENSSEIIEKIKG-----QNVDNMTAREALNFLW-ELKDS 839
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 74/386 (19%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAATEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D + Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKAKRYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGL-CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ +E++ G EAQ + E + +++ + E L++L+G
Sbjct: 166 LKAREIVV---GFPLDEAQVKV---------FERQMNLLISEQFEIPE-NLLIELSGL-- 210
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ- 560
ALEN A L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 -------TALEN--------QAASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFAT 254
Query: 561 -----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 255 KSSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFL 314
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 315 DHFFERSDLIEALKGVYDLERLASRV 340
>gi|417552544|ref|ZP_12203614.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-81]
gi|417560180|ref|ZP_12211059.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC137]
gi|421199246|ref|ZP_15656410.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC109]
gi|421456115|ref|ZP_15905458.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-123]
gi|421633047|ref|ZP_16073690.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-13]
gi|421805159|ref|ZP_16241052.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-694]
gi|395522762|gb|EJG10851.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC137]
gi|395565213|gb|EJG26861.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC109]
gi|400211213|gb|EJO42176.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-123]
gi|400392803|gb|EJP59849.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-81]
gi|408707766|gb|EKL53049.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-13]
gi|410409757|gb|EKP61681.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-A-694]
Length = 881
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
>gi|256847968|ref|ZP_05553412.1| DNA mismatch repair protein MutS [Lactobacillus coleohominis
101-4-CHN]
gi|256715028|gb|EEU30005.1| DNA mismatch repair protein MutS [Lactobacillus coleohominis
101-4-CHN]
Length = 877
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 174/317 (54%), Gaps = 38/317 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTAS 762
P+ + + L A+ S +E LF+E Q I A+S +DVL+SFAV +
Sbjct: 497 PELKEKEALILGAQEKSTALEYDLFVEVREQVKTAIERLQALAEALSELDVLQSFAVVSE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
P + D+ L IK HP G VPND+ +G+D+D
Sbjct: 557 KYHFV-----------RPELNHDHQ---LMIKNGRHPVVEKFMGHQEYVPNDVQMGQDTD 602
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L+ ++AQ+GCF+P E + + D IFTR+GA D +
Sbjct: 603 -----ILLITGPNMSGKSTYMRQLALSAVMAQMGCFIPAEKANMPIFDQIFTRIGAADDL 657
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++GESTF+VE E + L AT++SL++ DE+GRGT+T+DG A+A A+ + ++ +
Sbjct: 658 VSGESTFMVEMMEANNALLHATRNSLILFDEIGRGTATYDGMALAQAIIEYVHNNVHAKT 717
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ + EL+FL+++T G +SYG+
Sbjct: 718 LFSTHYHELT---------GLDQQLDKLQNVHVGATEENGELIFLHKVTDGPADKSYGIH 768
Query: 1002 VAVMAGVPQKVVEAASH 1018
VA +AG+P +++ A+H
Sbjct: 769 VAKLAGMPATLLKRANH 785
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 161/370 (43%), Gaps = 38/370 (10%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT---LSGVGKCR 324
KK++ +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 6 KKLTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAIKGAQLLELTLTSRSHSAKNPIP 65
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ +++ V+ L+ +GYKV EQ+E ++AK ++ R + +VTP T +D
Sbjct: 66 MCGVPHRAVENYVDILIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLVTPGTQMDL 120
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G +L A+ G D Y A+ D + + T + L L+
Sbjct: 121 KGDQAQSNNYLTAVYLD--GSD-----YCLAYADLSTGELKTTTFQQQSE---LMNELIN 170
Query: 443 VSPKEVIYENR---GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
+ +EV++ + + E K S+ S + +T L+ + +V +
Sbjct: 171 LQTREVVHLEKLPQSIIDELGKRNILISSQSQLAKEAEVSYLTQNLENQNQQHVVAILVS 230
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDCLRM 557
+ ++ S A + Q S + I H S+ L+ + LR+G R
Sbjct: 231 YLLTTQKRSLAHLQIAQSYQPSSFMK--IDHYSKTNLELMTNLRSGK-----------RQ 277
Query: 558 DGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
LD T+ G RLL+ W+ PL D + I R D V+ L+ N + L K+
Sbjct: 278 GTLVWLLDETKTAMGSRLLKRWLDRPLIDQQKIEKRQDKVQVLLDNYFERQNLQDELIKV 337
Query: 618 PDLERLLGRV 627
DLERL GRV
Sbjct: 338 YDLERLAGRV 347
>gi|198473172|ref|XP_001356195.2| GA18039 [Drosophila pseudoobscura pseudoobscura]
gi|198139335|gb|EAL33255.2| GA18039 [Drosophila pseudoobscura pseudoobscura]
Length = 914
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/535 (28%), Positives = 257/535 (48%), Gaps = 106/535 (19%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE---------------VVM 608
LD C T G RL+ W+ PL+ E +N+R ++VE L+++S+ ++M
Sbjct: 329 LDHCRTPQGHRLMGKWVKQPLRSQEILNDRHNIVECLLESSDTLESLSLDYLKRIPDILM 388
Query: 609 VVAQYLRK---LPDLER--------------LLGRVKARVQASSC-----IVLPLIGKKV 646
+ + +R+ L DL R LL + V++ C + L G K
Sbjct: 389 LTKKLMRRKATLQDLFRIYQVILRTPKIVQVLLSLENSTVESVICSPFKSFLEDLTGLKQ 448
Query: 647 LKQQVKVFGSLVKG---LRIAMD--LLMLMHKEGHIIPSLSRIFKPPIFDGSD------- 694
+ +QV F ++ +G ++ + D L+ L + + R+ K D D
Sbjct: 449 MVEQVVDFEAIERGEYLVKSSFDSRLMELQQTMNELYDKMERL-KSKCNDELDLDSKQIK 507
Query: 695 --GLDKFLTQFEAAI--DSDFPDYQNHDVTDL--------------------------DA 724
+ K F + DS +N+ + D+ +
Sbjct: 508 LENVAKLGYHFRTTLKDDSVLRKNKNYRIVDVIKGGVRFTSDKLEGYADEFASCHSRYEE 567
Query: 725 ETLSI---LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
+ LSI +I++ + A+ + + + ++ +D L SFA+ A + RP +L +
Sbjct: 568 QQLSIVEEIIQVAVGYAAPLTSLNNELAQLDCLVSFAIAARSAPTPYVRPNMLAEGAGKL 627
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
V D P L+++ E+ + N + +D C ++TGPNMGGKST
Sbjct: 628 VLTDVRHPCLELQ---------EHVSF-IANSVYFKKDK--C--NMFIITGPNMGGKSTY 673
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R+ AV++A +G FVPC M +S+ D+I R+GA+D I+ G STF+VE ET+ +++
Sbjct: 674 IRSVGTAVLMAHVGAFVPCGMATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIRT 733
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT SLVI+DELGRGTST++G IA+++ L + C LFATH+H +TK + P V
Sbjct: 734 ATDKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKETKCFTLFATHFHEITKLAETLPTVK 793
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
HMA ++++N++ LY++ G +S+G+QVA +A P+ VV+ A
Sbjct: 794 NCHMAAL--ADADNFT-------LLYQVRPGVMEKSFGIQVARLANFPEDVVQNA 839
>gi|315651393|ref|ZP_07904418.1| DNA mismatch repair protein MutS [Lachnoanaerobaculum saburreum DSM
3986]
gi|315486352|gb|EFU76709.1| DNA mismatch repair protein MutS [Lachnoanaerobaculum saburreum DSM
3986]
Length = 880
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 184/322 (57%), Gaps = 43/322 (13%)
Query: 784 QDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
Q N V+ IK HP LG++ + ND L ++ R ++TGPNM GKST
Sbjct: 574 QINTNGVIDIKDGRHPVVESMLGDDSF--IANDTYLDQNK----KRMSIITGPNMAGKST 627
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T L ++AQ+G FVP L + D IFTR+GA+D + +G+STF+VE TE A++L+
Sbjct: 628 YMRQTALICMMAQIGSFVPASQASLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANILR 687
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHP 958
AT++SLVILDE+GRGTSTFDG AIA+AV + ++ I + LFATHYH L++ + P
Sbjct: 688 NATRNSLVILDEIGRGTSTFDGLAIAWAVVEHISNIKLIGAKTLFATHYHELSELEGTLP 747
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA-- 1016
V + K +N +VFL ++ +G +SYG+QVA +AGVP+ V E A
Sbjct: 748 GV--NNYCILVKERGDN-------IVFLRKIVTGGADKSYGIQVAKLAGVPESVTERAKE 798
Query: 1017 -----SHAALAMK-KSIGESFKS------------SEQRSEFSSLHEEWLKTIVNVSRVD 1058
S A +A + + I E+ S S Q S F +++ + + I +S++D
Sbjct: 799 LIEELSGADIATRAREIAEAAVSKRKPVKRPDEVESGQLSLFDAVNNDSI--IEEISKID 856
Query: 1059 CNS-DDDDAYDTLFCLWHELKN 1079
S DA +TL+ L +++KN
Sbjct: 857 ITSMTPMDALNTLYALQNKIKN 878
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
+S +Y K++Y D +LF+++G FYE++ DA + KEL+ +T G +
Sbjct: 3 LSPMMSKYLETKNEYPDCILFYRLGDFYEMFFDDATMVAKELELTLTGKDCGLKERAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGT 385
G+ + + +LV G+KV EQ+E + AK ++ R++V +VTP T T G
Sbjct: 63 GVPYHAAETYINRLVQNGHKVAIAEQMEDPKLAKG-----LVKREVVRIVTPGTITSSGV 117
Query: 386 IGPD 389
+ D
Sbjct: 118 LADD 121
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G R+LRS++ PL + E I NR + V L + + +YL + DLERL
Sbjct: 295 LDKTSTAMGARMLRSFLEQPLINRERILNRQEAVAELFERYIDREELREYLSPVYDLERL 354
Query: 624 LGRV 627
+ RV
Sbjct: 355 MARV 358
>gi|392589317|gb|EIW78648.1| DNA mismatch repair protein Msh6 [Coniophora puteana RWD-64-598 SS2]
Length = 1270
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 160/303 (52%), Gaps = 26/303 (8%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
W + ++ +D L S S SS A+ P+ P+ V D ++ + L HP
Sbjct: 945 WLRAVRVLAELDCLFSL----SKSSSALGEPMCRPE----FVEGDAAS--MEFEELRHP- 993
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
L +PND+ LG + + R LLTGPNMGGKST++R T VI+AQLG FVP
Sbjct: 994 TLSLLKDTFIPNDVKLGGE----VGRIALLTGPNMGGKSTVMRMTATGVIMAQLGMFVPA 1049
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ + D I TR+GA D + + STF VE E +L+ AT SLVILDELGRGTST+
Sbjct: 1050 KSARICPVDAILTRMGAYDSMFSNASTFKVELDECCKILRDATPRSLVILDELGRGTSTY 1109
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG AIA AV QL FATHY LT +FA HP++ HM+
Sbjct: 1110 DGMAIAGAVLHQLATHTLPLTFFATHYGSLTDDFAYHPNIRNMHMSTLVDDEK------- 1162
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEF 1040
+ELVFLY+L G S+G VA +AGVP VVE A + K + FK+ + +
Sbjct: 1163 RELVFLYKLVDGVATGSFGTHVANLAGVPSSVVERAD----VVSKDFAKQFKAKLEDRQK 1218
Query: 1041 SSL 1043
SL
Sbjct: 1219 KSL 1221
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 224/503 (44%), Gaps = 88/503 (17%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQY 284
EE+ T F +L +RD + +P +P YD RTLY+P A K+ + +KQ+W +K +
Sbjct: 301 EEKTSTEEPFSFL--VDVRDKDGIKPGEPGYDPRTLYVPKSAWKQFTPFEKQFWEIKQNH 358
Query: 285 MDVLLFFKVGKFYE-------LYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAV 337
D +LFF+ GKF E LYE DA IGH+E D K+T K VG+ E +
Sbjct: 359 FDTVLFFQKGKFLEARSYQESLYEDDARIGHREFDLKLTHRV--KMSMVGVPEMSFNFWA 416
Query: 338 EKLVARGYKVGRIEQLETSEQAKARHTNS---------VISRKLVNVVTPSTTVDGTIGP 388
K + +GYKVGR++Q ET+ A+ R S ++ R L V T T VD +
Sbjct: 417 AKFLGKGYKVGRVDQAETALGAEMRLAKSKGEDGGKDKIVRRSLNKVFTNGTLVDDDLLT 476
Query: 389 D--AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
D A H ++++E + +G +D A + + DD L L+ Q+ PK
Sbjct: 477 DEQAGHCISLRELPPVSTSAKPSFGACVLDSATSQFNLSFFEDDVCLTRLETLVRQLRPK 536
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV---KKLVQLNGYFNGS 503
EV++ L + L+ L A T D + L +LN F
Sbjct: 537 EVVFTKGNLSVATTRLLKAI--------LPAACLWTSLRDVEGYDYDQTLTELNTMFGPG 588
Query: 504 SSP----------WSKALENVMQHDI--------GFSALGGLISHLSRLMLDDVLRNGDI 545
SS AL + + +I ALG + ++ L + + D+
Sbjct: 589 SSANEDETMDADDGDSALSSAIPQEIRDMASCRSAIEALGAMAWYVDAPYLKQLNIDRDL 648
Query: 546 LP---YKVYRDCLR-----MDGQTL-------------------YLDSCVTSSGKRLLRS 578
L + VY R +DGQTL L+ C+T GKRL R
Sbjct: 649 LTMRNFNVYDPMKRGQNLVLDGQTLAHVEVLMNTEGNDDGSLHKMLNRCITPFGKRLFRI 708
Query: 579 WICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIV 638
W+C PL+DV+ IN+RLD V LM++ ++ ++ +PDLER++ +R+ A +C V
Sbjct: 709 WLCVPLRDVKDINSRLDAVSDLMEHPTFEQAFSELVKGMPDLERIV----SRIHAKNCKV 764
Query: 639 LPLIGKKVLKQQVKVFGSLVKGL 661
I KVL F L KG
Sbjct: 765 KDFI--KVLTS----FKKLSKGF 781
>gi|6324482|ref|NP_014551.1| mismatch repair ATPase MSH2 [Saccharomyces cerevisiae S288c]
gi|2506880|sp|P25847.2|MSH2_YEAST RecName: Full=DNA mismatch repair protein MSH2; AltName: Full=MutS
protein homolog 2
gi|600468|emb|CAA58189.1| orf 00935 [Saccharomyces cerevisiae]
gi|1419934|emb|CAA99102.1| MSH2 [Saccharomyces cerevisiae]
gi|285814801|tpg|DAA10694.1| TPA: mismatch repair ATPase MSH2 [Saccharomyces cerevisiae S288c]
gi|392296738|gb|EIW07840.1| Msh2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 964
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|337286407|ref|YP_004625880.1| DNA mismatch repair protein MutS [Thermodesulfatator indicus DSM
15286]
gi|335359235|gb|AEH44916.1| DNA mismatch repair protein MutS [Thermodesulfatator indicus DSM
15286]
Length = 857
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 185/330 (56%), Gaps = 44/330 (13%)
Query: 695 GLDKFLT----QFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISC 750
G ++F+T +FEA + S + + +L+ E + + EKA + ++ A++
Sbjct: 499 GGERFITPELKEFEAKVLS-----ADERIKELEQELFLEIRKNVAEKAQELKKLARALAT 553
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP- 809
+DVL S A A ++ RP I+ + P ++I+ HP LP
Sbjct: 554 LDVLASLAEVAVTNNYI--RPKIIEE------------PGIQIREGRHPVV---EKALPS 596
Query: 810 ---VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPN + L + L ++TGPNM GKST+LR T L +LA +G FVP E +
Sbjct: 597 GSFVPNSVKLDLKENVVL----VITGPNMAGKSTILRQTALITLLAHVGSFVPAEEATIG 652
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
L D IF+R+GA+D++ G STF+VE +E A++L +AT SLVILDE+GRGTST+DG AIA
Sbjct: 653 LCDRIFSRIGASDQLSRGRSTFMVEMSECANILHQATSRSLVILDEIGRGTSTYDGLAIA 712
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+AV L E+ LFATHYH L + +P + ++ A K+ + +++FL
Sbjct: 713 WAVAEFLHEK-KIMTLFATHYHELVELAGEYPGI--KNFNVAVKT-------FEDQIIFL 762
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
YRL G ESYG+QVA +AG+P++V+ A
Sbjct: 763 YRLLPGPASESYGVQVAALAGLPKEVIARA 792
Score = 104 bits (259), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 171/380 (45%), Gaps = 60/380 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K +Y D +LFF++G FYE++ DAE+ + LD +T G +V G+ +
Sbjct: 9 RQYLEIKEKYPDAILFFRLGDFYEMFFEDAELASRILDIALTSRDKGTKEKVPMCGVPAA 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ +LV+ GYKV EQ+E +QAK ++ R+++ VVTP +D D
Sbjct: 69 NAAHYINRLVSAGYKVAICEQVEDPKQAKG-----IVKREVIRVVTPGLNLDEETLTSKD 123
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L+++ G +G A +D + V I+ + L ++ PKE++
Sbjct: 124 NRFLVSLFPGKA--------WGMAHLDLSTGDFKVTEIHSEEEML---NELFRLEPKEIL 172
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTD--FLDA--------SEVKKLVQLNGY 499
++ +R EL P + ++ F++A E ++ L G+
Sbjct: 173 LPETLKDSALERKIR---------ELIPHIFISYRVFINAKQRAEELIKERYQVADLTGF 223
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHL---------SRLMLDDVL-RNGDILPYK 549
G S + D + SHL L++D+ RN +IL
Sbjct: 224 --GLSQAPAALCAAATLLDYVIETQKEVSSHLGVPKFYYLSQFLIIDEATKRNLEIL--- 278
Query: 550 VYRDCL--RMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
R+ L + G L+ LD +T G RLL+ W+ +PL+++E I RL+ V YL+
Sbjct: 279 --RNNLDGSLKGSLLWVLDKTLTPMGGRLLKEWLLYPLRNLESIEARLEAVAYLVDEPSK 336
Query: 607 VMVVAQYLRKLPDLERLLGR 626
+ + L ++ D+ERL GR
Sbjct: 337 RKNLRELLARIADVERLTGR 356
>gi|393219867|gb|EJD05353.1| DNA mismatch repair protein MSH2 [Fomitiporia mediterranea MF3/22]
Length = 962
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 183/347 (52%), Gaps = 30/347 (8%)
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAM 768
D+Q ++TD + T S L++ + A+ ++ V+ A I+ +DV+ SFA ++ +
Sbjct: 581 DFQ--EITDTYSRTQSSLVKEVVNIAATYTPVLEALDDQIAHLDVIVSFAHVSANAPEEY 638
Query: 769 HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTL 828
RP + + V +K HP ++ +PND+ + + +
Sbjct: 639 VRPKLSVKGSGSVV----------LKNARHPLLEVQDDISFIPNDVEMIKGESEFQ---- 684
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
++TGPNMGGKST +R + ++AQ GCFVPC L + D+I R+GA D + G STF
Sbjct: 685 IITGPNMGGKSTYIRQVGVIALMAQTGCFVPCSEAELPIFDSILCRVGAGDSQLKGVSTF 744
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+ E ETA++L+ A+QDSL+I+DELGRGTST+DG+ +A+A+ + I+ LFATH+H
Sbjct: 745 MAEMLETATILKSASQDSLIIIDELGRGTSTYDGFGLAWAISEYIASEIHAFCLFATHFH 804
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT PHV H+ E S D+++ LY++ G C +S+G+ VA +A
Sbjct: 805 ELTALDQQIPHVKNLHVVAHVSKTGE--SSQDRDITLLYKVEPGICDQSFGIHVAELANF 862
Query: 1009 PQKVVEAASHAALAMKKSIGESFKSSEQRSEF--------SSLHEEW 1047
P+ VV+ A A ++ GE K E L +EW
Sbjct: 863 PESVVKLAKRKADELEDFGGEHEKQPTHPKEIVDEGSKIVEQLLQEW 909
Score = 48.1 bits (113), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL SW+ PL ++ I R D+V+ + +S + YLR +PD+ R
Sbjct: 346 LNKCKTGQGTRLLGSWLKQPLVNLHEIQKRQDLVQTFIHDSNTRRTLQDDYLRMMPDMHR 405
Query: 623 LLGRVKARV 631
+ R + V
Sbjct: 406 ISKRFQRSV 414
>gi|417547227|ref|ZP_12198313.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC032]
gi|421665424|ref|ZP_16105537.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC087]
gi|421672808|ref|ZP_16112762.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC099]
gi|400385115|gb|EJP43793.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC032]
gi|410378502|gb|EKP31120.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC099]
gi|410390182|gb|EKP42579.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC087]
Length = 881
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E + + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSTQVIEKV 842
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 166/383 (43%), Gaps = 66/383 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHL 393
+ E +AR K GR + EQ + RK+V ++TP GT+ DA+ L
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTP-----GTLTDDAL-L 127
Query: 394 LAIKEGNCGPDNGSVVY----GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ + N +Y GFA +D +A V D L L ++ P E++
Sbjct: 128 TSYQSSNL---VALCIYQSQIGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEIL 182
Query: 450 YE----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF---------LDA 487
+ + + ++ +K L F+ +A L +V+ L
Sbjct: 183 IDEDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDQLPLAK 242
Query: 488 SEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILP 547
+ L+ ++ P +++ +++ F AL I+ + +++ + +G L
Sbjct: 243 AAAAALIHYAKETQKTALPHIRSI--LLEQSSDFIALDP-ITRRNLEIIEPLFEHGTSL- 298
Query: 548 YKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NS 604
+++ DC T+ G RLL + P++D ++ RLD +E L++ +
Sbjct: 299 FQLVNDC-------------QTAMGGRLLSRILMQPVRDTALLDARLDAIEQLIQGYHEN 345
Query: 605 EVVMVVAQYLRKLPDLERLLGRV 627
V MV L+++ D+ER+L RV
Sbjct: 346 PVRMV----LKEIGDIERVLSRV 364
>gi|416133406|ref|ZP_11598107.1| DNA mismatch repair protein MutS [Enterococcus faecium E4452]
gi|364092929|gb|EHM35246.1| DNA mismatch repair protein MutS [Enterococcus faecium E4452]
Length = 881
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISSVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|421664814|ref|ZP_16104950.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC110]
gi|408711985|gb|EKL57177.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC110]
Length = 881
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEVVMVVAQYLRKLPD 619
+++ C T+ G RLL + P++D ++ RLD +E L++ S V +V L+++ D
Sbjct: 301 FVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPVRLV----LKEIGD 356
Query: 620 LERLLGRV 627
+ER+L RV
Sbjct: 357 IERVLSRV 364
>gi|339639233|emb|CCC18468.1| DNA mismatch repair protein mutS [Lactobacillus pentosus IG1]
Length = 910
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 177/316 (56%), Gaps = 38/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + H+ L+AE+ S +E LF ++KA Q + + A++ IDVL+SFAV +
Sbjct: 496 PELKEHESLILEAESHSTDLEYQLFTTVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
P + +D+ LKI HP G VPND+ + D
Sbjct: 556 DYHFV-----------RPTLTKDHD---LKIVDGRHPVVEKVMGNQSYVPNDVTMAPDE- 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VI+AQ+GCFVP + L + D IFTR+GATD +
Sbjct: 601 ----TVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIFTRIGATDDL 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + LQ AT +SLV+ DE+GRGT+T+DG A+A A+ + I+ +
Sbjct: 657 ISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEFVHNHIHAKT 716
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ + ELVFL+++ GA +SYG+
Sbjct: 717 LFSTHYHELT---------ALDQELSGLRNVHVGATEQNGELVFLHKVEPGAADKSYGVH 767
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +AG+P +++ A+
Sbjct: 768 VAKLAGMPDSLLKRAN 783
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 166/368 (45%), Gaps = 48/368 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY VK+QY D LF+++G FYE++ DA G + L+ +T S G+
Sbjct: 12 RQYLAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCGVPHR 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TTV+
Sbjct: 72 AVQNYIDILVDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTTVERGAEQAKS 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
+L A+ + + YGFA+ D + L+ V T N+ AL L + KE
Sbjct: 127 NNYLTALIQVDKQ-------YGFAYADLSTGELKTSVLTTNE-----ALVNELTSLQTKE 174
Query: 448 VIYENRGLCKEAQKALRKFSA-GSAALELTPAMA---VTDFLDASEVKKLVQ-LNGYFNG 502
++ + + E + ++K S ++TP +T L K++V+ L Y
Sbjct: 175 IVV-DESVPAELRDQIQKLGILISEQNQVTPQATLSYLTQDLTVDLEKQVVERLLMYITV 233
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ L+ + ++ + + H S+ L L +R G + G
Sbjct: 234 TQKRSLAHLQKAVAYEPSYFL---KLDHNSKYNLELMKSIRTG------------KKQGT 278
Query: 561 TLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+ LD T+ G RLL+ WI PL + I R + V L+ + + + L K+ D
Sbjct: 279 LLWLLDETKTAMGGRLLKQWIDRPLIVQDDIKTRQNKVAALLDHYFERSNLQEELVKVYD 338
Query: 620 LERLLGRV 627
LERL GRV
Sbjct: 339 LERLAGRV 346
>gi|333907024|ref|YP_004480610.1| DNA mismatch repair protein mutS [Marinomonas posidonica IVIA-Po-181]
gi|333477030|gb|AEF53691.1| DNA mismatch repair protein mutS [Marinomonas posidonica IVIA-Po-181]
Length = 877
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 163/283 (57%), Gaps = 48/283 (16%)
Query: 746 HAISCIDVLRSFAVTA---SMSSGAMH--RPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
A++ +DVL +FA A +++ +H R + + ++P V + PF
Sbjct: 552 QALAQLDVLNNFAERADQLNLTQPELHTGRGIDITAGRHPVVE----------SVISEPF 601
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
VPND+ L + L++TGPNMGGKST +R L +LA GCFVP
Sbjct: 602 ---------VPNDLTLNDQRS-----LLMITGPNMGGKSTYMRQIALITLLAHTGCFVPA 647
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
+ +++ D IFTR+G++D + G STF+VE TETA++L ATQ+SLV++DE+GRGTSTF
Sbjct: 648 QAASIAVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNATQNSLVLMDEVGRGTSTF 707
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTK-----EFASHPHVTLQHMACAFKSNSEN 975
DG ++A+A L + + C +LFATHY LT + A + H+T
Sbjct: 708 DGLSLAWAAVEHLAQTLKCYVLFATHYFELTGLAEQLDTAENVHLT-------------- 753
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
++ + E+VFL+++ SG +SYGLQVA +AGVP+ V++ A H
Sbjct: 754 ATEYEDEIVFLHKVHSGPASQSYGLQVAQLAGVPKNVIQQAKH 796
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 175/377 (46%), Gaps = 48/377 (12%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY+ +KSQ+ + LLF+++G FYEL+ DA+ + LD ITL+ G I +GI
Sbjct: 14 RQYFGLKSQHPNQLLFYRMGDFYELFYDDAKRAAQLLD--ITLTARGHSGGQPIPMAGIP 71
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAVH 392
A E +AR ++G E + +EQ T+ + R++ +VTP T D +
Sbjct: 72 FHAAENYIARLVRMG--ESVVVAEQTGDPATSKGPVERQIARIVTPGTISDEAFLEEKRE 129
Query: 393 --LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
LL+I + G ++GF+++D A+ R + ++ AL L ++SP+E+
Sbjct: 130 NLLLSIAHQS---RKGLDIFGFSYLDMASGRFCLFEVD---GHEALANELQRLSPREI-- 181
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ------LNGYFNGSS 504
L E A + EL P F S ++L+Q L+G+ +
Sbjct: 182 ----LISEDFPARKTLQLEKGIAELGP----WHFDYESSYRQLIQQFNTKDLSGFGCEAL 233
Query: 505 SPWSKALENVMQH--DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---- 558
+ + ++Q+ D SAL H+ +M++ ++ +L R L +D
Sbjct: 234 TAAIASAGALLQYAKDTQRSAL----PHIQAIMVEH--KDDSVLIDAATRRNLEIDINLT 287
Query: 559 ---GQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
TL LD C T G RLL+ W+ P++D+ I +R V L K+ +
Sbjct: 288 GGTSNTLSQVLDQCATPMGSRLLKRWLHTPVRDLNEIQSRQSAVAEL-KSQFYYQPLNGS 346
Query: 614 LRKLPDLERLLGRVKAR 630
L+K+ DLER+L RV R
Sbjct: 347 LKKVGDLERILSRVALR 363
>gi|323352314|gb|EGA84849.1| Msh2p [Saccharomyces cerevisiae VL3]
Length = 964
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|190407259|gb|EDV10526.1| DNA mismatch repair protein MSH2 [Saccharomyces cerevisiae RM11-1a]
gi|323335633|gb|EGA76916.1| Msh2p [Saccharomyces cerevisiae Vin13]
Length = 964
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|334345821|ref|YP_004554373.1| DNA mismatch repair protein mutS [Sphingobium chlorophenolicum L-1]
gi|334102443|gb|AEG49867.1| DNA mismatch repair protein mutS [Sphingobium chlorophenolicum L-1]
Length = 869
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 148/254 (58%), Gaps = 25/254 (9%)
Query: 766 GAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDD 822
G RP LP+ D GP L I G HP AL +G V ND LG SD
Sbjct: 563 GGWQRPHFLPE--------DGEGPCLDITGGRHPVVEDALRRDGQPFVANDCRLGA-SD- 612
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
R L+TGPNMGGKST LR + VILAQ G +VP + L+L D +F+R+GA+D +
Sbjct: 613 ---RLWLVTGPNMGGKSTFLRQNAIIVILAQAGAYVPAQSATLTLVDRLFSRVGASDNLA 669
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G STF+VE ETA++L +AT+ S VILDE+GRGTST+DG A+A+AV + E CR L
Sbjct: 670 KGRSTFMVEMVETAAILAQATERSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNRCRCL 729
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
FATHYH LT+ + ++L H+ KGD LV L+ + G SYGL V
Sbjct: 730 FATHYHELTRLAETLSSLSLHHVRA-------REWKGD--LVLLHEVAEGPADRSYGLAV 780
Query: 1003 AVMAGVPQKVVEAA 1016
A +AG+P V++ A
Sbjct: 781 ARLAGLPPAVLKRA 794
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 154/366 (42%), Gaps = 35/366 (9%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY +K++ D LLF+++G F+EL+ DA+ LD +T G + G+
Sbjct: 4 QYLALKAEAQDCLLFYRMGDFFELFFEDAKAAAATLDIALTSRGEHGGAPIPMCGVPVHS 63
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDA-- 390
+ + +L+ G++V EQ ET QAKAR + S+++R +V VT T + T+
Sbjct: 64 AESYLARLIKAGHRVAIAEQTETPAQAKARGSKSLVARAIVRYVTAGTLTEETLLDSRRD 123
Query: 391 ---VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
V L + G G YG A D + R T+ A L A L ++ P E
Sbjct: 124 NMLVALAQVGGGEAGE------YGLAAADISTGRFETLTLR----AADLPAELARLRPSE 173
Query: 448 VIYENRGLCKEAQKA----LRKFSAG--SAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
++ + GL + + FS+G AAL+ +A D +L + G
Sbjct: 174 IVLPD-GLELDLPDSHPFDRTAFSSGRAEAALKRIFGVATLDGFGQFSRAELAAMGGLLG 232
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQT 561
L++ + + F A + + +D R + L R
Sbjct: 233 --------YLDHAGKGTLPFLAPPSAKTSGGHMAIDAATR--ESLEITATMSGTRAGSLL 282
Query: 562 LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLE 621
+D VT +G RLL + PL D I RL +V+ +S + + LR LPD+
Sbjct: 283 GAVDRTVTGAGARLLAQDLSAPLMDQAAIEARLGLVQLFHDDSMLRDQLRVALRALPDIG 342
Query: 622 RLLGRV 627
R LGR+
Sbjct: 343 RALGRL 348
>gi|380033021|ref|YP_004890012.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum WCFS1]
gi|38258029|sp|Q88UZ7.1|MUTS_LACPL RecName: Full=DNA mismatch repair protein MutS
gi|342242264|emb|CCC79498.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum WCFS1]
Length = 896
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 38/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ ++H+ L+AE+ S +E LF ++KA Q + + A++ IDVL+SFAV +
Sbjct: 496 PELKSHESLILEAESHSTDLEYQLFTKVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
RP L +S + LKI HP G VPN++ + D
Sbjct: 556 --DYHFVRPK-LTKSHD-----------LKIVDGRHPVVEKVMGNQSYVPNNVTMSPDE- 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VI+AQ+GCFVP + L + D IFTR+GATD +
Sbjct: 601 ----TVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIFTRIGATDDL 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + LQ AT +SLV+ DE+GRGT+T+DG A+A A+ + I+ +
Sbjct: 657 ISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEFVHNHIHAKT 716
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ D ELVFL+++ GA +SYG+
Sbjct: 717 LFSTHYHELT---------ALDQELSGLRNVHVGATEQDGELVFLHKVEPGAADKSYGVH 767
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +AG+P ++E A+
Sbjct: 768 VAKLAGMPTSLLERAN 783
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 48/368 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY+ VK+QY D LF+++G FYE++ DA G + L+ +T S G+
Sbjct: 12 RQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCGVPHR 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT++
Sbjct: 72 AVQNYIDILVDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTTLERGAEQAKT 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
+L A+ + + YGFA+ D + L+ V T ND L L + KE
Sbjct: 127 NNYLTALIQRDQQ-------YGFAYADLSTGELKTSVLTTND-----TLINELTSLQTKE 174
Query: 448 VIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVT----DFLDASEVKKLVQLNGYFNG 502
++ ++ + + + ++ S +TP ++ D E + + +L Y
Sbjct: 175 IVVDD-SVASDLRDQIKTLGILISEQNNVTPQAQLSYLTQDLTVDLEQQVVERLLMYITV 233
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ L+ + ++ + + H S+ L L +R G + G
Sbjct: 234 TQKRSLAHLQKAIAYEPSYFL---KLDHNSKYNLELMKSIRTG------------KKQGT 278
Query: 561 TLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+L D T+ G RLL+ WI PL I R + V L+ + + + L K+ D
Sbjct: 279 LLWLLDETKTAMGGRLLKQWIDRPLIVKADIETRQNKVATLLDHYFERSNLQEELTKVYD 338
Query: 620 LERLLGRV 627
LERL GRV
Sbjct: 339 LERLAGRV 346
>gi|421656807|ref|ZP_16097104.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-72]
gi|408503800|gb|EKK05553.1| DNA mismatch repair protein MutS [Acinetobacter baumannii Naval-72]
Length = 881
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 176/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G ++P L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYIPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E + + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSTQVIEKV 842
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|309791040|ref|ZP_07685576.1| DNA mismatch repair protein MutS [Oscillochloris trichoides DG-6]
gi|308226895|gb|EFO80587.1| DNA mismatch repair protein MutS [Oscillochloris trichoides DG6]
Length = 996
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 143/234 (61%), Gaps = 15/234 (6%)
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
N L+I+G HP VPNDIL+ D + L++TGPNM GKST++R
Sbjct: 700 NTSTRLQIRGGRHPVVEQMIPETFVPNDILI----DTTSAQMLIITGPNMSGKSTVMRQV 755
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L V+LAQ+G FVP E + L D IFTR+GA D I TG+STF+VE TETA++L ++++
Sbjct: 756 ALIVLLAQIGAFVPAESAEVGLVDRIFTRIGAQDDIATGQSTFMVEMTETAALLVQSSRR 815
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SL+ILDE+GRGTST+DG AIA AV + ++ CR LFATHYH LT V
Sbjct: 816 SLIILDEVGRGTSTYDGMAIARAVVEYIHNEPQLQCRTLFATHYHELTALEHELDRVRNL 875
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
HMA + + +VFL++L G SYG+ VA +AG+P+ V++ AS
Sbjct: 876 HMAAIEQG---------KHVVFLHQLREGGADRSYGIHVAELAGIPRPVIQRAS 920
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS--GVGKCR-------- 324
+QY +K++ D +L F+ G FYE ++ DA++ + LD +T V K R
Sbjct: 11 RQYRKLKAEAEDAILLFRFGDFYETFDDDAKLIAELLDVTLTRKDFAVDKGRPKEEQKLF 70
Query: 325 --QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA------------------RHT 364
G+ ++ V LVARGY+V EQL +E +++
Sbjct: 71 TPMAGMPYHAVERYVNDLVARGYRVAIAEQLSETEASRSDTRPKSIFAAGLQQIVPGEME 130
Query: 365 NSVISRKLVNVVTPSTTVDGTI 386
++ R++V V+TP T VD ++
Sbjct: 131 RKMVHREIVRVITPGTVVDPSM 152
>gi|172002|gb|AAA34802.1| homologue of bacterial MutS protein [Saccharomyces cerevisiae]
Length = 966
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|328948686|ref|YP_004366023.1| DNA mismatch repair protein mutS [Treponema succinifaciens DSM 2489]
gi|328449010|gb|AEB14726.1| DNA mismatch repair protein mutS [Treponema succinifaciens DSM 2489]
Length = 863
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 168/301 (55%), Gaps = 32/301 (10%)
Query: 724 AETLSILIELFIEKASQWSEVI-------HAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
A+ L + LFIE ++ + I I+ +DV+ SFA +A + + +RP +L
Sbjct: 514 AKILELEHNLFIEVRNELKKYIPYLQQAAKKIAYVDVVCSFAESAILYN--WNRPHVLSD 571
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
S +V+ NG HP G VPND+ L + L+TGPNM
Sbjct: 572 SLEFSVK--NGR---------HPVVERHLPAGEFVPNDVSLCGSEPENSASFALITGPNM 620
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GKST LR L +LAQ G FVP + + + D IF R+GA+D + GESTFLVE TET
Sbjct: 621 AGKSTFLRQNALIALLAQTGSFVPADEANIGIVDRIFCRVGASDNLARGESTFLVEMTET 680
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A +L+ ATQ+SLVI+DE+GRGTST DG +IA+AV L+ + C+ FATHYH LT+
Sbjct: 681 ARILRSATQNSLVIMDEVGRGTSTEDGLSIAWAVSEYLLNTLKCKTFFATHYHELTR--- 737
Query: 956 SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEA 1015
H +L+ + A N ++VFL ++ G+ SYG+ VA +AG+P+ V+E
Sbjct: 738 -LEHKSLKRLCMAVAENG-------SDIVFLRKVVEGSSENSYGIHVARLAGIPESVIER 789
Query: 1016 A 1016
A
Sbjct: 790 A 790
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 166/395 (42%), Gaps = 44/395 (11%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +K Q+ + +LFF++G FYE++ DA + L+ +TL+ G GI
Sbjct: 10 QYLGIKKQHPNDVLFFRLGDFYEMFNEDALEVSRLLN--LTLTHKGDNPMCGIPYHSAKG 67
Query: 336 AVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDAVHLL 394
+ +L+ G KV EQ+ E AK + RK+V VVTP T V+ + + + L
Sbjct: 68 YIARLLRMGKKVAVAEQV--GEVAK----RGLTERKVVEVVTPGTAVESEYLDGGSNNFL 121
Query: 395 AIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY-ENR 453
A + G G A++D + + L + SPKE+I E+
Sbjct: 122 ASIFISGG------FAGLAYIDVTTGEFRATKFPEYKFAENVSKELGRCSPKEIILPESL 175
Query: 454 GLCKEAQKALRKFSAGSAALELTPAM---AVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
KE Q L S S + P A ++ + K+ LN + SP
Sbjct: 176 KNNKEIQTILETISVASVS--WYPDWHFNAEKNYEHLVKQFKVANLNSFSLTKESPEVPP 233
Query: 511 LENVMQHDIGFSALGGLISHLSRL---------MLDDVLRNGDILPYKVYRDCLRMDGQT 561
++ D +SH+S + ++DD R + + + DG +
Sbjct: 234 AGFLL--DYIEKTTNAPVSHISGISVYQDSQFVIIDDSSRRNLEITFNL------RDGTS 285
Query: 562 LY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
Y + + T+ G RLLRSW+ PL + IN+R + VE +K+ ++ V + L
Sbjct: 286 SYTLLESVSNTKTAMGSRLLRSWLSFPLTNENEINSRQNHVELFVKDRNLLHCVRENLDG 345
Query: 617 LPDLERLLGRVKA-RVQASSCIVLPLIGKKVLKQQ 650
+ D+ERL GR+ R A L K LK Q
Sbjct: 346 ILDVERLAGRIAMDRAHAKDLQALKASLKFWLKSQ 380
>gi|300769726|ref|ZP_07079609.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308181084|ref|YP_003925212.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|418275815|ref|ZP_12891138.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448821800|ref|YP_007414962.1| DNA mismatch repair protein MutS [Lactobacillus plantarum ZJ316]
gi|300492769|gb|EFK27954.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046575|gb|ADN99118.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|376009366|gb|EHS82695.1| DNA mismatch repair protein MutS/HexA [Lactobacillus plantarum subsp.
plantarum NC8]
gi|448275297|gb|AGE39816.1| DNA mismatch repair protein MutS [Lactobacillus plantarum ZJ316]
Length = 896
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 38/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ ++H+ L+AE+ S +E LF ++KA Q + + A++ IDVL+SFAV +
Sbjct: 496 PELKSHESLILEAESHSTDLEYQLFTKVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
RP L +S + LKI HP G VPN++ + D
Sbjct: 556 --DYHFVRPK-LTKSHD-----------LKIVDGRHPVVEKVMGNQSYVPNNVTMSPDE- 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VI+AQ+GCFVP + L + D IFTR+GATD +
Sbjct: 601 ----TVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIFTRIGATDDL 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + LQ AT +SLV+ DE+GRGT+T+DG A+A A+ + I+ +
Sbjct: 657 ISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEFVHNHIHAKT 716
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ D ELVFL+++ GA +SYG+
Sbjct: 717 LFSTHYHELT---------ALDQELSGLRNVHVGATEQDGELVFLHKVEPGAADKSYGVH 767
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +AG+P ++E A+
Sbjct: 768 VAKLAGMPTSLLERAN 783
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 48/368 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY+ VK+QY D LF+++G FYE++ DA G + L+ +T S G+
Sbjct: 12 RQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCGVPHR 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT++
Sbjct: 72 AVQNYIDILVDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTTLERGAEQAKT 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
+L A+ + + YGFA+ D + L+ V T ND L L + KE
Sbjct: 127 NNYLTALIQRDQQ-------YGFAYADLSTGELKTSVLTTND-----TLINELTSLQTKE 174
Query: 448 VIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVT----DFLDASEVKKLVQLNGYFNG 502
++ ++ + + + ++ S +TP ++ D E + + +L Y
Sbjct: 175 IVVDD-SVASDLRDQIKTLGILISEQNNVTPQAELSYLTQDLTVDLEQQVVERLLMYITV 233
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ L+ + ++ + + H S+ L L +R G + G
Sbjct: 234 TQKRSLAHLQKAIAYEPSYFL---KLDHNSKYNLELMKSIRTG------------KKQGT 278
Query: 561 TLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+L D T+ G RLL+ WI PL I R + V L+ + + + L K+ D
Sbjct: 279 LLWLLDETKTAMGGRLLKQWIDRPLIVKADIETRQNKVATLLDHYFERSNLQEELTKVYD 338
Query: 620 LERLLGRV 627
LERL GRV
Sbjct: 339 LERLAGRV 346
>gi|453084349|gb|EMF12393.1| DNA mismatch repair protein MSH2 [Mycosphaerella populorum SO2202]
Length = 956
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 170/311 (54%), Gaps = 30/311 (9%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L++ + A+ +S VI ++ + DV+ SFA + + A RP + P+
Sbjct: 559 TQSGLVQEVVNVAASYSPVIEQLAGVLAHLDVIVSFAHVSVHAPTAYVRPKMHPRGTGST 618
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
+ +K HP ++ + ND+ L +S + L ++TGPNMGGKST
Sbjct: 619 I----------LKEARHPCMEMQDDIQFITNDVSLTRESSEFL----IITGPNMGGKSTY 664
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R + ++AQ+GCFVPC L+L D I R+GA+D + G STF+ E ET+++L+
Sbjct: 665 IRQIGVIALMAQIGCFVPCSEAELTLFDCILARVGASDSQLKGVSTFMAEMLETSNILKT 724
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT++SLVI+DELGRGTST+DG+ +A+A+ ++ I +FATH+H LT +HP V
Sbjct: 725 ATKESLVIIDELGRGTSTYDGFGLAWAISEHIITEIGAYTMFATHFHELTALVDTHPQVQ 784
Query: 962 LQHMACAFK------------SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVP 1009
H+ + +NS N + +E+ LY++ G +S+G+ VA + P
Sbjct: 785 NLHVVAHIENGNEEGGEDVHMTNSGNNNHRRREVTLLYKVVPGISDQSFGIHVAELVRFP 844
Query: 1010 QKVVEAASHAA 1020
QKVV A A
Sbjct: 845 QKVVNMAKRKA 855
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKL 617
+LY L+ C T G RLL W+ PL +E I R +VE + ++E+ + + +LR +
Sbjct: 310 SLYGLLNHCKTPVGSRLLAQWLKQPLMSLEEIEKRQQLVEAFVNDTELRQTLQEDHLRSI 369
Query: 618 PDLERLLGRVKAR 630
PDL RL + + +
Sbjct: 370 PDLYRLAKKFQRK 382
>gi|406862019|gb|EKD15071.1| MutS domain V [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 916
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 166/299 (55%), Gaps = 22/299 (7%)
Query: 726 TLSILIELFIEKASQWSEVI----HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L+ + A+ + V+ + ++ +DV+ SFA + + + RP I P+ +
Sbjct: 560 TQSSLVNEVVSVAASYCPVLELLANVLAHMDVIISFAHCSVHAPTSYVRPKIHPRGEGNT 619
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
V + G HP ++ + ND+ L + L ++TGPNMGGKST
Sbjct: 620 V----------LVGARHPCMEMQDDIQFITNDVTLKRGESEFL----IITGPNMGGKSTY 665
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R + ++AQ+GCFVPC+ L++ D I R+GA+D + G STF+ E ETA++L+
Sbjct: 666 IRQIGVIALMAQIGCFVPCDEAELTIFDCILARVGASDSQLKGVSTFMAEMLETANILKS 725
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT +SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT +P V
Sbjct: 726 ATSESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFSMFATHFHELTALVEQYPQVH 785
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ N K +E+ LY++ G C +S+G+ VA + P+KVV A A
Sbjct: 786 NLHVVAHIDDN----GKAKREVTLLYKVEEGVCDQSFGIHVAELVRFPEKVVNMAKRKA 840
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
LD C T G+RLL W+ PL + I R +VE ++++E+ + +++R +PDL R
Sbjct: 316 LDHCKTPVGRRLLSQWLKQPLMSRDEIEKRQQLVEAFVEDTELRQTIQEEHMRSIPDLFR 375
Query: 623 LLGRVKAR------VQASSCIVLPLIG 643
L R + + V +S +VL L G
Sbjct: 376 LTKRFQKKLATLEDVVRASQVVLSLPG 402
>gi|227550809|ref|ZP_03980858.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1330]
gi|257893264|ref|ZP_05672917.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408]
gi|257896447|ref|ZP_05676100.1| DNA mismatch repair protein MutS [Enterococcus faecium Com12]
gi|227180046|gb|EEI61018.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1330]
gi|257829643|gb|EEV56250.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408]
gi|257833012|gb|EEV59433.1| DNA mismatch repair protein MutS [Enterococcus faecium Com12]
Length = 881
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y S + KA+E H + L L +R G
Sbjct: 231 YLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|293377536|ref|ZP_06623731.1| DNA mismatch repair protein MutS [Enterococcus faecium PC4.1]
gi|292643851|gb|EFF61966.1| DNA mismatch repair protein MutS [Enterococcus faecium PC4.1]
Length = 670
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 178/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 286 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 345
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 346 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 391
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 392 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 448
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 449 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 508
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 509 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 559
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 560 AKIAGLPANLLERAA 574
Score = 43.5 bits (101), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 15/154 (9%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLL+ W+ PL + I R ++V L+ + + + L K+ DLERL
Sbjct: 73 LDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSALTKVYDLERL 132
Query: 624 LGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLMLMHKEGHIIPS 680
GRV V I L K +QV + L++G+ LL M H++
Sbjct: 133 AGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSEMQPMDHLVQL 187
Query: 681 LSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
+ + + PP I +G+ DG ++ L + +A+
Sbjct: 188 IDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 221
>gi|254433851|ref|ZP_05047359.1| DNA mismatch repair protein MutS [Nitrosococcus oceani AFC27]
gi|207090184|gb|EDZ67455.1| DNA mismatch repair protein MutS [Nitrosococcus oceani AFC27]
Length = 851
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 166/298 (55%), Gaps = 30/298 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-G 788
L+E F+E +A++ +DVL + A A PL+ S P + + G
Sbjct: 525 LLEQFMEPLPALRACANALAELDVLHNLAERAKTLEYVA--PLL---SDQPGIFIERGRH 579
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
PV++ + L PF VPND+ L E R L++TGPNMGGKST +R T L
Sbjct: 580 PVVE-QTLEDPF---------VPNDLTLHEAR-----RMLIITGPNMGGKSTYMRQTALI 624
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LA +G FVP V+ D IFTR+GA D + G STF+VE TETA++L AT+ SLV
Sbjct: 625 VLLAHIGSFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLV 684
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDE+GRGTSTFDG ++A+AV L ++ LFATHY LT P V H+
Sbjct: 685 LLDEVGRGTSTFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTA- 743
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
++ + +VFL+ + G +SYGLQVA +AGVPQ+++ A + ++ +
Sbjct: 744 --------TEHKEHIVFLHAVKEGPASQSYGLQVAALAGVPQEIIAQARQQLMELENN 793
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 162/380 (42%), Gaps = 56/380 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y + LL +++G FYEL+ DA+ + LD +T G + GI
Sbjct: 3 QQYLRIKAEYPNTLLLYRMGDFYELFYDDAQRASELLDIALTSRGRSAGEPIPMAGIPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGTIGPDA 390
+D + +LV +G V EQ+ +K + R++V ++TP T T + +
Sbjct: 63 ALDSYLARLVRQGESVAICEQIGNPAASKG-----PVERQVVRIITPGTVTEEALLEARR 117
Query: 391 VHLLAI--KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE- 447
+LLA KEG+ V+GFA +D + R I + AS +A + L ++ P E
Sbjct: 118 DNLLAALQKEGD--------VFGFAVLDLCSGRF---NILEVASESAATSELARIRPAEL 166
Query: 448 VIYENRGLC---KEAQKALRK-----FSAGSAALELTPAMAVTDF--LDASEVKKLVQLN 497
++ E+ L + + +R F SA +L D E+K +
Sbjct: 167 LVSEDLALILVDSKTEAVVRPLPPWYFDRESAQRQLCRQFGTQDLAGFGCEEMKTAIAAA 226
Query: 498 G----YFNGSSS---PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
G Y + P AL+ Q + ++LD R L +
Sbjct: 227 GCLLHYVQDTQRTQFPHIHALQVERQE--------------TSIILDPSTRRNLELEESL 272
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
D R + LD T+ G RLLR ++ PL+D + R + L++ + V+
Sbjct: 273 SGDSGR-NTLIAVLDHTATAMGSRLLRRYLHRPLRDQTLLKQRQQALATLLEGG-LSDVL 330
Query: 611 AQYLRKLPDLERLLGRVKAR 630
LR + D+ER+L RV R
Sbjct: 331 QTLLRGIGDIERILSRVALR 350
>gi|163790798|ref|ZP_02185224.1| DNA mismatch repair protein [Carnobacterium sp. AT7]
gi|159873978|gb|EDP68056.1| DNA mismatch repair protein [Carnobacterium sp. AT7]
Length = 874
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 181/315 (57%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE---KASQWSEVIH----AISCIDVLRSFAVTAS 762
P + ++ L+AE S+L+E LF E Q+ E + ++ IDVL+SFA +
Sbjct: 498 PALKEKEILILEAEEKSMLLEYTLFTEVRETIKQYIERLQNLAKTVAAIDVLQSFATISE 557
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP++ S+ ++ + V K+ LG+ VPN + +G++++
Sbjct: 558 KYHYT--RPVMTANSQEISLIEGRHPVVEKV--------LGQQTY--VPNSVEMGKENE- 604
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L VI+AQ+GCFVP + + + D IFTR+GA D ++
Sbjct: 605 ----ILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPADQAKMPIFDQIFTRIGAADDLI 660
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ A+++SL++ DE+GRGT+T+DG A+A A+ + E+++ + L
Sbjct: 661 AGQSTFMVEMMEANEALRYASKNSLILFDEIGRGTATYDGMALAEAIIEHIHEKVHAKTL 720
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P +T H+ + + ELVFL+++ G +SYG+QV
Sbjct: 721 FSTHYHELTVLDERLPRLTNVHVGAV---------EEEGELVFLHKMLPGPADKSYGIQV 771
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P +++ A+
Sbjct: 772 AKLAGLPDELLSRAT 786
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 163/370 (44%), Gaps = 38/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY +K+ Y D LF+++G FYEL+ DA + L+ +T +
Sbjct: 6 KQTPMMEQYLGIKANYPDAFLFYRLGDFYELFNEDAIKASQLLEVTLTSRNRNADEPIPM 65
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ ++ L+ +GYKV EQ+E + AK ++ R++V ++TP T +D T
Sbjct: 66 CGVPYHAAKGYIDSLIEKGYKVAICEQVEDPKTAKG-----MVKREVVQLITPGTAMD-T 119
Query: 386 IGPDAV---HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
DA +L A+ N Y A+ D + + +N S ++ + LM
Sbjct: 120 KSMDAKTNNYLAAVMSTNTNH------YYLAYADLSTGELKTTKLN---SLESVMSELMS 170
Query: 443 VSPKEVIYENRGLCKEAQKALRK-----FSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
+ KEV+++ E Q+ L+ S +E +T+ ++ +E+ +V+L
Sbjct: 171 LRTKEVVFKEANDI-ELQEELKTKLGIMVSTQKELIESAEFSYLTNEIENTELIDIVKLL 229
Query: 498 GYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRM 557
+ L + ++G G+ S + L +D ++ L + R +
Sbjct: 230 LSY----------LYVTQKRNLGHLQKVGVYSPTNHLKMDHYSKHNLELVSSI-RTGQKK 278
Query: 558 DGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
LD T+ G RLL+ WI PL + I R + VE L+ + + + L ++
Sbjct: 279 GTLLWLLDETKTAMGGRLLKQWIDRPLIQEKQITMRQNSVESLINHFFERTDLNEALTRV 338
Query: 618 PDLERLLGRV 627
DLERL GRV
Sbjct: 339 YDLERLAGRV 348
>gi|424763746|ref|ZP_18191211.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1337RF]
gi|431757856|ref|ZP_19546485.1| DNA mismatch repair protein mutS [Enterococcus faecium E3083]
gi|402422331|gb|EJV54571.1| DNA mismatch repair protein MutS [Enterococcus faecium TX1337RF]
gi|430618361|gb|ELB55208.1| DNA mismatch repair protein mutS [Enterococcus faecium E3083]
Length = 881
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEETSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADRSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y S + KA+E H + L L +R G
Sbjct: 231 YLAVTQKRSLAHIQKAVEYQPNHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|46123905|ref|XP_386506.1| MSH2_NEUCR DNA mismatch repair protein MSH2 [Gibberella zeae PH-1]
Length = 930
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 164/297 (55%), Gaps = 12/297 (4%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ ++ AS + V+ ++ I L V S++ ++H P P +
Sbjct: 568 TQSSLVHEVVQVASSYCPVLERLAGI--LAHLDVIVSLAHASVHAP---ESYVRPKIHAR 622
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + ++ HP ++ + ND+ L D L ++TGPNMGGKST +R T
Sbjct: 623 GEGQTI-LREARHPCMELQDDVQFITNDVELTRDKSSFL----IITGPNMGGKSTYIRQT 677
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 678 GVIALMAQVGCFVPCAEAELTIYDSILARVGASDSQLKGVSTFMAEMLETANILKSATSE 737
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+++DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT +P V H+
Sbjct: 738 SLIVIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTALADQYPQVQNLHV 797
Query: 966 ACAFKSNSENYSKGD--QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
S+ D +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 798 TAHIGGTDAAASEADAKREVTLLYKVAPGVCDQSFGIHVAELVRFPDKVVRMAKRKA 854
Score = 43.1 bits (100), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL I R +VE ++E+ + ++LR +PDL R
Sbjct: 323 LNHCKTPVGSRLLAQWLKQPLMSKNEIEKRQQLVEAFYVDTELRQTLQEEHLRSIPDLYR 382
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGHIIPS 680
L R + GK L+ V+ + +++ G + +M E + P
Sbjct: 383 LSKRFQR-------------GKANLEDVVRAYQVVIRLPGFIGTFEGVM---DENYKDP- 425
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
L + + D SD L K E +D D D +
Sbjct: 426 LDEAYTTKLRDLSDSLGKLQDMVEQTVDLDALDRHEY 462
>gi|334882032|emb|CCB82982.1| DNA mismatch repair protein mutS [Lactobacillus pentosus MP-10]
Length = 910
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 177/316 (56%), Gaps = 38/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + H+ L+AE+ S +E LF ++KA Q + + A++ IDVL+SFAV +
Sbjct: 496 PELKEHESLILEAESHSTDLEYQLFTTVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
P + +D+ LKI HP G VPND+ + D
Sbjct: 556 DYHFV-----------RPTLTKDHD---LKIVDGRHPVVEKVMGNQSYVPNDVTMAPDE- 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VI+AQ+GCFVP + L + D IFTR+GATD +
Sbjct: 601 ----TVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIFTRIGATDDL 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + LQ AT +SLV+ DE+GRGT+T+DG A+A A+ + I+ +
Sbjct: 657 ISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEFVHNHIHAKT 716
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ + ELVFL+++ GA +SYG+
Sbjct: 717 LFSTHYHELT---------ALDQELSGLRNVHVGATEQNGELVFLHKVEPGAADKSYGVH 767
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +AG+P +++ A+
Sbjct: 768 VAKLAGMPDSLLKRAN 783
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 166/368 (45%), Gaps = 48/368 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY VK+QY D LF+++G FYE++ DA G + L+ +T S G+
Sbjct: 12 RQYLAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCGVPHR 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT++
Sbjct: 72 AVQNYIDILVDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTTLERGAEQAKS 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
+L A+ + + YGFA+ D + L+ V T N+ AL L + KE
Sbjct: 127 NNYLTALIQVDKQ-------YGFAYADLSTGELKTSVLTTNE-----ALVNELTSLQTKE 174
Query: 448 VIYENRGLCKEAQKALRKFSA-GSAALELTPAMA---VTDFLDASEVKKLVQ-LNGYFNG 502
++ + + E + ++K S ++TP +T L K++V+ L Y
Sbjct: 175 IVV-DESVPAELRDQIQKLGILISEQNQVTPQATLSYLTQDLTVDLEKQVVERLLMYITV 233
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ L+ + ++ + + H S+ L L +R G + G
Sbjct: 234 TQKRSLAHLQKAVAYEPSYFL---KLDHNSKYNLELMKSIRTG------------KKQGT 278
Query: 561 TLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+ LD T+ G RLL+ WI PL + I R + V L+ + + + L K+ D
Sbjct: 279 LLWLLDETKTAMGGRLLKQWIDRPLIVQDDIKTRQNKVAALLDHYFERSNLQEELVKVYD 338
Query: 620 LERLLGRV 627
LERL GRV
Sbjct: 339 LERLAGRV 346
>gi|326477897|gb|EGE01907.1| DNA mismatch repair protein msh-2 [Trichophyton equinum CBS 127.97]
Length = 942
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 158/290 (54%), Gaps = 22/290 (7%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA ++ + A RP I P+ + +K HP ++
Sbjct: 593 LAHLDVIVSFAHVSAHAPTAYVRPKIHPRGTGNTI----------LKEARHPCMEMQDDI 642
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 643 TFITNDVSLIRDESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 698
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 699 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 758
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN---SENYSKGDQELV 984
A+ +V I C LFATH+H LT +P AF + +E K QE+
Sbjct: 759 AISEHIVTEIKCFSLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVT 818
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
LYR+ G C +S+G+ VA + P KVV A A + E F SS
Sbjct: 819 LLYRVEPGVCDQSFGIHVAELVRFPDKVVNMARQKAEEL-----EDFTSS 863
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+LA+K + V G F D + + V D+ + +LL+Q+ KE +
Sbjct: 142 ILAVKAATKAKEMRHV--GVCFADASVRELGVSEFVDNDLYSNFESLLIQLGVKECLIPA 199
Query: 453 RGLCKEAQKALRKFSAGSAALELT--PAMAVTDFLDASEVKKLVQ--------------- 495
G K+ + A + A S + +T P A ++ +L++
Sbjct: 200 EGQKKDVELAKLRQIADSCGVAITERPVSAFGTKDIEQDLSRLLKDETGPAMLPQTDLKL 259
Query: 496 -------LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
L Y N S P + + +HD+ + LD LR +++P
Sbjct: 260 AMGSASALISYLNAMSDPSNFGQYQLYKHDLA-----------QYMKLDASALRALNLMP 308
Query: 548 YKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
RD M +LY L+ C T G RLL W+ PL + + I R +VE + ++E
Sbjct: 309 GP--RDS--MKNMSLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVIDTE 364
Query: 606 VVMVVAQ-YLRKLPDLERLLGRVK 628
+ + + +LR +PDL RL R +
Sbjct: 365 LRQTMQENHLRSIPDLYRLAKRFQ 388
>gi|315054281|ref|XP_003176515.1| DNA mismatch repair protein msh-2 [Arthroderma gypseum CBS 118893]
gi|311338361|gb|EFQ97563.1| DNA mismatch repair protein msh-2 [Arthroderma gypseum CBS 118893]
Length = 943
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 157/291 (53%), Gaps = 23/291 (7%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA ++ + A RP I P+ + +K HP ++
Sbjct: 593 LAHLDVIVSFAHVSAHAPTAYVRPKIHPRGTGNTI----------LKEARHPCMEMQDDI 642
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 643 TFITNDVSLIRDESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 698
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 699 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 758
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF----KSNSENYSKGDQEL 983
A+ +V I C LFATH+H LT +P AF + E K QE+
Sbjct: 759 AISEHIVTEIKCFSLFATHFHELTALEERYPKAVSNLHVVAFIGDGPATDEKQQKKKQEV 818
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
LYR+ G C +S+G+ VA + P KVV A A + E F SS
Sbjct: 819 TLLYRVEPGVCDQSFGIHVAELVRFPDKVVNMARQKAEEL-----EDFTSS 864
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+LA+K + V G F D + + V D+ + +LL+Q+ KE +
Sbjct: 142 ILAVKAATKAKEMRHV--GVCFADASVRELGVSEFVDNDLYSNFESLLIQLGVKECLITT 199
Query: 453 RGLCKEAQKALRKFSAGSAALELTP----AMAVTD----------------FLDASEVKK 492
G K+ + A + A S + +T A D L +E+K
Sbjct: 200 EGQKKDVELAKLRQIADSCGVAITERPVSAFGTKDIEQDLSRLLKDETGPAMLPQTELKL 259
Query: 493 LV----QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
+ L Y N S P + + +HD+ + LD LR +++P
Sbjct: 260 AMGSASALISYLNAMSDPSNFGQYQLYKHDLA-----------QYMKLDASALRALNLMP 308
Query: 548 YKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
RD M +LY L+ C T G RLL W+ PL + + I R +VE + ++E
Sbjct: 309 GP--RDG--MKNMSLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTE 364
Query: 606 VVMVVAQ-YLRKLPDLERLLGRVK 628
+ + + +LR +PDL RL R +
Sbjct: 365 LRQTMQEDHLRSIPDLYRLAKRFQ 388
>gi|320354737|ref|YP_004196076.1| DNA mismatch repair protein MutS [Desulfobulbus propionicus DSM 2032]
gi|320123239|gb|ADW18785.1| DNA mismatch repair protein MutS [Desulfobulbus propionicus DSM 2032]
Length = 889
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 164/292 (56%), Gaps = 38/292 (13%)
Query: 732 ELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
E ++ + +V ++ +DVL FA A+ RP Q N +
Sbjct: 552 EHLVQNDHRLLQVAAQLAELDVLACFAEVATRYRYC--RP------------QINTNRTI 597
Query: 792 KIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
I HP + G VPND+ L ++ + L ++TGPNM GKST+LR T L V+
Sbjct: 598 TISEGRHPVIERSMDPGRFVPNDVHLDQERHELL----IITGPNMAGKSTVLRQTALIVL 653
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+A +GCFVP E L + D IFTR+GA D + G+STF+VE ETA++L AT+DSLVIL
Sbjct: 654 MAHIGCFVPAESADLCIVDRIFTRVGAMDDLRRGQSTFMVEMNETANILNNATEDSLVIL 713
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
DE+GRGTST+DG AIA+AV +L + + + LFATHYH LT A+ +
Sbjct: 714 DEIGRGTSTYDGLAIAWAVAEELAHKNGLGIKTLFATHYHELTDLAATSDKI-------- 765
Query: 969 FKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+NYS +E ++FL++L GA SYG+QVA +AGVP+ V+ A
Sbjct: 766 -----QNYSIAVKEWNDSIIFLHKLVKGATNRSYGIQVAALAGVPEHVITRA 812
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 155/387 (40%), Gaps = 46/387 (11%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG----VGKCR 324
K++ +QY +K QY +LF+++G FYE++ DA + K L +T K
Sbjct: 6 KITPMLQQYLEIKEQYPGTILFYRMGDFYEMFFEDAVVAAKVLGITLTSRSHKDEANKIP 65
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ + + K+V GY+V EQ+E ++AK ++ R+++ VVTP T D
Sbjct: 66 MCGVPFHAVSGYLGKMVKAGYRVAICEQVEDPKEAKG-----IVRREVIRVVTPGVTTDD 120
Query: 385 TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN-DDASCAALGALLMQV 443
+ + + G A +D + R + ++ AL + ++
Sbjct: 121 QLLDEKADCYVCALVVQKKSTKEHLAGLALLDISTGRFQICEVSFSPKDPGALVDVFSRL 180
Query: 444 SPKEVIYENRGLCKEAQ-KALRKFSAGSAALELTPAM---AVTDFLDASEVKKLVQLNGY 499
P E++ L A L G L P VT +E + L G+
Sbjct: 181 RPAELLIPQAELDTLAPLTHLLSQQMGQLCLTARPDFHFETVTAIATLTEHFRTANLAGF 240
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILP-----YKVYRDC 554
++ A++ A G L+ +L ++ I+P Y + D
Sbjct: 241 ---GCDAYTAAID----------AAGALLLYLRETQKSELAHVKRIMPLHQSGYLIIDDA 287
Query: 555 LRMD---GQTLY-----------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
R + +TL LD T G RLLR W+ PL+D + I RLD VE L
Sbjct: 288 SRRNLELTETLVGGQRQGSLLATLDRTATPMGARLLRRWLLFPLQDRKEILRRLDGVEEL 347
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
++ V + L + DLERL R+
Sbjct: 348 IEQPAVRNTLRSLLDSIYDLERLSSRL 374
>gi|386286541|ref|ZP_10063729.1| DNA mismatch repair protein MutS [gamma proteobacterium BDW918]
gi|385280338|gb|EIF44262.1| DNA mismatch repair protein MutS [gamma proteobacterium BDW918]
Length = 860
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 141/228 (61%), Gaps = 14/228 (6%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P+L I+ HP + ND+ L +D RTL++TGPNMGGKST +R T L
Sbjct: 581 PILDIEQGRHPVVESVLDEPFIANDLKLADDR-----RTLIITGPNMGGKSTYMRQTALI 635
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LA +G FVP + LSL D IFTR+G++D + G STF+VE TETA++L AT SL+
Sbjct: 636 VLLAHIGSFVPAKSVKLSLVDQIFTRIGSSDDLAGGRSTFMVEMTETANILHNATAKSLI 695
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DE+GRGTSTFDG ++A+A L +R++ LFATHY LT S+P H+
Sbjct: 696 LMDEIGRGTSTFDGLSLAWACAIDLADRVHGFTLFATHYFELTVLPESYPKAANVHLGV- 754
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ + +VFL+R+ G SYGLQVA +AG+P KVV AA
Sbjct: 755 --------TEHNDHIVFLHRVEEGPANRSYGLQVAKLAGIPAKVVSAA 794
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 51/375 (13%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC-----RQVGISE 330
QY +K+++ + ++F+++G FYEL+ DA+ + LD ITL+ GK G+
Sbjct: 20 QYLKIKAEHPNEVVFYRMGDFYELFFEDAKKASELLD--ITLTARGKAGGNPIPMCGVPY 77
Query: 331 SGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDA 390
++ + KLV G V EQ+ +K + R + +VTP T D + +
Sbjct: 78 HAVEGYLAKLVKAGESVAICEQIGDPATSKG-----PVERAVARIVTPGTISDEALLDER 132
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
L + CG D+G V+G A +D ++ R V + AL L ++ P E++
Sbjct: 133 RDALLV--AACG-DSG--VFGIAVLDMSSGRFQVLEVKGQ---TALIGELQRLRPAELLI 184
Query: 451 ENRGLCKEAQK--ALRK-----FSAGSAALELTPAMAVTDF--LDASEVKKLVQLNG-YF 500
+ + K LRK F +A L V D ++ V G
Sbjct: 185 ADDLHIDDMPKFGGLRKLAPWEFDFDAATRGLCQHFGVQDLAGFGCEQLHHGVAAAGCLL 244
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ AL ++ Q + H SR DD + + D L + G
Sbjct: 245 HYVKDTQRSALPHIRQ-----------LKHESR---DDAVAMDAATRRNLELD-LNLSGG 289
Query: 561 T-----LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
T D C T+ G RLLR W+ PL++ ++ R V L+ N + + A L+
Sbjct: 290 TENTLASVFDRCQTAMGSRLLRRWLHRPLRNQAILSARQSGVVGLIDNYQFETLRAT-LK 348
Query: 616 KLPDLERLLGRVKAR 630
++ DLER+L RV R
Sbjct: 349 QIGDLERILSRVGLR 363
>gi|258405463|ref|YP_003198205.1| DNA mismatch repair protein MutS [Desulfohalobium retbaense DSM 5692]
gi|257797690|gb|ACV68627.1| DNA mismatch repair protein MutS [Desulfohalobium retbaense DSM 5692]
Length = 896
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 146/229 (63%), Gaps = 17/229 (7%)
Query: 791 LKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
L+I G HP G +PND+ + + DD R LL+TGPNM GKST+LR T +
Sbjct: 585 LRIIGGRHPAVEATQGRTDYIPNDVRI--EGDD---RVLLITGPNMAGKSTVLRQTAIIC 639
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
ILAQ+G FVP + L D IFTR+GA+D + G+STF+VE TETA +L++A+++SLVI
Sbjct: 640 ILAQIGSFVPAREGWIGLCDRIFTRVGASDNLAQGQSTFMVEMTETARILRQASRNSLVI 699
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERIN--CRLLFATHYHPLTKEFASHPHVTLQHMAC 967
LDE+GRGTSTFDG A+A+AV LV+R + R LFATHYH LT P V ++A
Sbjct: 700 LDEIGRGTSTFDGLALAWAVVEDLVQRGHGGVRTLFATHYHELTDLEGQLPGVRNYNIAV 759
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+GD +VFL RL G SYG++V+ +AGVPQ VV+ A
Sbjct: 760 -------KEWRGD--IVFLRRLVPGPADRSYGIEVSQLAGVPQGVVKRA 799
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 164/386 (42%), Gaps = 57/386 (14%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG-----KC 323
K++ +QY +K Y D LLFF++G FYEL+ DAE + L +ITL+ K
Sbjct: 5 KLTPMLEQYLRIKEDYPDALLFFRMGDFYELFFEDAETAARVL--QITLTSRNPNAETKV 62
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV- 382
G+ ++ + +L+ +GYKV +Q+E QAK ++ R++ V+TP T V
Sbjct: 63 PMAGVPHHATEEYLRQLLEQGYKVAICDQVEDPRQAKG-----LVKREVTRVLTPGTVVE 117
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D T+ + LA + G G+ A++D + + W G L L++
Sbjct: 118 DSTLSAKTSNYLAAVCWHGGSKTGAA----AWIDFSTGQ-WTGV--QSKHQVQLWQWLIK 170
Query: 443 VSPKEVIYENRGLCKEAQKALRK----------FSAGSAALELTPAMAVTDF--LDASEV 490
+ P+EV+ E + LR F G A L A V LD +
Sbjct: 171 IQPQEVLMPEGTELPEQAQVLRDKIQFCPYNGYFEPGRARERLLQAQDVASLTPLDLEDK 230
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL--ISHLSRLMLDDVL-RNGDILP 547
LVQ G A + Q S LG I L LD+V RN ++
Sbjct: 231 PALVQACGAL--------LAYLHTTQRCEDLSHLGQFQPIQPNRFLQLDEVTERNLELFQ 282
Query: 548 YKVYRDCLRMDG----QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
R+DG TL+ LD +T G RLL+ + P +D+ I VV L+
Sbjct: 283 --------RLDGGKGPGTLWHALDRTLTPMGGRLLQQRLRQPWRDLRTITAHQGVVALLV 334
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + + L + DLERL R+
Sbjct: 335 DDDGLRQSLRERLDAVYDLERLTTRI 360
>gi|281422309|ref|ZP_06253308.1| DNA mismatch repair protein MutS [Prevotella copri DSM 18205]
gi|281403630|gb|EFB34310.1| DNA mismatch repair protein MutS [Prevotella copri DSM 18205]
Length = 887
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 179/332 (53%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D + L + +LF E + E I + I+ +D
Sbjct: 510 LAQAERYITQELKEYE-EKILGADEKILVLEAQLFNELIAAMQEYIPQIQINANLIARMD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SFA T+ + RP++ + VL IK HP LGE
Sbjct: 569 CLLSFAKTSDENRYV--RPIV------------DDSEVLDIKQGRHPVIETQLPLGER-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL + + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + L
Sbjct: 613 -YVPNDVLLDTEKQ----QIMMITGPNMAGKSALLRQTALIVLLAQVGCFVPAESARVGL 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE A++L + SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEAANILNNVSPRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E + R LFATHYH L + + P + K+ + + + D +++F
Sbjct: 728 AIVEYLHEHKKAQARTLFATHYHELNEMEKNFPRI---------KNFNVSVREVDGKVIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L +L G S+G+ VA +AG+P+ +V A+
Sbjct: 779 LRKLEPGGSEHSFGIHVAEIAGMPRSIVNRAN 810
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 169/388 (43%), Gaps = 51/388 (13%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL----SGVGKC 323
K ++ +Q++ +KS++ + LL F+ G FYE Y DA + L +T G
Sbjct: 6 KGLTPMMRQFFEMKSKHPEALLLFRCGDFYETYCEDAVEASRILGITLTRRNNGGSTGTT 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR--------HTNSVISRKLVNV 375
G +D + KL+ G +V +QLE ++ + + ++ R + +
Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAVCDQLEDPKKKRLEIKGKKGLSQMDKMVKRGITEL 125
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
VTP + + L KE N G G +F+D + G D
Sbjct: 126 VTPGVAMGDNV-------LNYKENNFLAAVHFGKTACGVSFLDISTGEFLTGEGTYDYVE 178
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
+G + PKEV+Y +R + +K F + EL + F + + ++KL
Sbjct: 179 KLMGNFM----PKEVLY-DRARKNDFEKY---FGSKYCTFELDDWV----FTEQTALQKL 226
Query: 494 VQLNGYFNGSSSPW--SKALEN-------VMQH-DIGFSALGGLISHLSRLMLDDVLRNG 543
+ G+F S + L+N +MQ+ +I I+ LSR+ D +R
Sbjct: 227 L---GHFKTKSLKGFGVEHLKNGVIASGAIMQYLEITQHTQINHITALSRIEEDKFVRM- 282
Query: 544 DILPYKVYRDCLRM--DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
D + M DG +L +D VT+ G R+LR W+ PLKDV+ IN RLD+VEY
Sbjct: 283 DRFTIRSLELVAPMQEDGSSLLNVIDRTVTAMGGRMLRRWLVFPLKDVKPINERLDIVEY 342
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
K E ++ L ++ DLER++ +V
Sbjct: 343 FFKEPEFRQLLDDQLHRISDLERIISKV 370
>gi|253999524|ref|YP_003051587.1| DNA mismatch repair protein MutS [Methylovorus glucosetrophus SIP3-4]
gi|253986203|gb|ACT51060.1| DNA mismatch repair protein MutS [Methylovorus glucosetrophus SIP3-4]
Length = 859
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 175/334 (52%), Gaps = 39/334 (11%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
HA++ +DV+ +FA A + + P+ A Q G ++ L PF
Sbjct: 554 HAVAQLDVIATFAERAQALN------YVQPEFTAEAGIQITAGRHPVVEQLAQPF----- 602
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
+ ND+ L + LL+TGPNMGGKST +R T L V+LA GCFVP + +
Sbjct: 603 ----IANDVQLTPYR-----QLLLITGPNMGGKSTYMRQTALIVLLAHCGCFVPAKAARI 653
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
D IFTR+GA+D + G STF+VE TETA++L AT+ SLV+LDE+GRGTSTFDG ++
Sbjct: 654 GQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEHSLVLLDEIGRGTSTFDGLSL 713
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+AV RQL+ER LFATHY LT+ H+ N +VF
Sbjct: 714 AWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNG---------IVF 764
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSL-- 1043
L+ + G +SYGLQVA +AG+P+ VV AA + +++ ++ ++ Q FS
Sbjct: 765 LHAVQEGPASQSYGLQVAQLAGIPRSVVNAAKRKLVQLEQ---QNIQAGPQSDMFSQQAA 821
Query: 1044 ---HEEWLKTIVNVSRVDCNSDDDDAYDTLFCLW 1074
H E + + R+D DD L L+
Sbjct: 822 AEPHVEVSPALAELERLD--PDDLTPKQALEALY 853
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 166/379 (43%), Gaps = 63/379 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---CRQVGISES 331
+QY +K+QY D+LLF+++G FYEL+ DAE + L +T G R G+
Sbjct: 21 RQYLGIKAQYPDMLLFYRMGDFYELFHDDAEKAARLLGITLTKRGASNGEPIRMAGVPYH 80
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ + KL G V EQ+ ++K + R++ ++TP T D + D
Sbjct: 81 AAEQYLAKLAKLGEAVAICEQIGDPAKSK-----GPVERQVTRILTPGTLTDSALLDDTR 135
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L+A+ G + G A ++ AA ++ + + + L L ++SP E++
Sbjct: 136 DNLLVAVSAGEG-------IVGLARINLAAGQLVLTEV----APGLLAQELERISPAELL 184
Query: 450 ----YENRGL----CKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVKKLVQLNG- 498
Y++ + C + + A +F SA LT D +++ + + G
Sbjct: 185 LADGYQHPSIEALKCPKKRLAPWQFDLDSATQLLTQQFNTHDLAGFGCADLTQAISAAGA 244
Query: 499 ------YFNGSSSPWSKALENVMQHD--IGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
+ SS P AL +V Q I F A + L +D LR G+ P
Sbjct: 245 LLDYVRHTQRSSLPHINAL-SVEQSGEYIQFDA-----ASRRNLEIDQTLR-GEPAP--- 294
Query: 551 YRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
TLY L++C T+ G RLLR W+ HPL+D I RL+ V L++ + +
Sbjct: 295 ----------TLYSLLNTCRTAMGARLLRHWLHHPLRDHAAIQARLEAVAALLQG-DALQ 343
Query: 609 VVAQYLRKLPDLERLLGRV 627
+ L + D+ER+ RV
Sbjct: 344 APRRLLNNIGDIERITARV 362
>gi|313672389|ref|YP_004050500.1| DNA mismatch repair protein muts [Calditerrivibrio nitroreducens DSM
19672]
gi|312939145|gb|ADR18337.1| DNA mismatch repair protein MutS [Calditerrivibrio nitroreducens DSM
19672]
Length = 850
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 143/234 (61%), Gaps = 16/234 (6%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPND+LL D R +++TGPNM GKST LR + ++A G FVP + D
Sbjct: 584 VPNDVLL----DGTKNRLMIITGPNMSGKSTYLRTVAVITLMAHCGLFVPAREAKIGFVD 639
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+GA+D + GESTF+VE ETA++++ ATQ SL+ILDE+GRGTSTFDG +IA++V
Sbjct: 640 RIFTRVGASDNLARGESTFMVEMLETANIIKNATQKSLIILDEIGRGTSTFDGLSIAWSV 699
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+ ER+ + LFATHYH LT+ L+ M K+ + + E++F+ ++
Sbjct: 700 AEYIAERVKAKTLFATHYHELTE---------LESMVAGVKNYTALVKEWKNEIIFMRKI 750
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK---SIGESFKSSEQRSEF 1040
T G +SYG+ VA +AG+P+ +V A ++K SI SF ++++ +
Sbjct: 751 TEGVADKSYGIYVAKLAGLPEAIVSRAEEVLSILEKHEISIDGSFMMTKKKRSY 804
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 189/435 (43%), Gaps = 78/435 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K++ Q+ K Y D +LFF++G FYE++ DA+I K L+ I L+ K + I
Sbjct: 6 KITPMYSQFLQEKKNYPDAILFFRMGDFYEMFGEDAKIASKILN--IALTARNKNEENPI 63
Query: 329 SESGID-----DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI ++KLV GYKV EQLE + AK ++ R +V VVTP T ++
Sbjct: 64 PMCGIPYHSYIPYLKKLVDAGYKVAICEQLEDPKNAKG-----IVKRGVVRVVTPGTLIE 118
Query: 384 GTI--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
I G D +L+ + +G + Y D + +V ++ ++
Sbjct: 119 DDILAGNDFNFILSFER------DGDIFYA-VVSDTSTGDTFV------TKSVSIEDIIT 165
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
Q +PKE+I + G+A + + D + ++ + Y+
Sbjct: 166 QWNPKEII-----------TTINNPPVGNATI------LRYRYNDEYMLDRVAE---YYG 205
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY--KVYRDCLRM-- 557
+S+ E V+ AL LI ++ +LD L+ + + +Y D + +
Sbjct: 206 ITSTVAIGIREEVI-----VKALFNLIKYIDDNLLDVKLKFPEFFTFDNTLYMDAVAIKT 260
Query: 558 ---------DGQTLYLDS---CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
G+T D C T+ G+RLL+ ++ P + I R + + + + NS+
Sbjct: 261 LEVVESSDPSGRTSLFDVLNFCKTAMGERLLKFYLLTPTRLKFEILRRQEWITFFVNNSD 320
Query: 606 VVMVVAQYLRKLPDLERLLGRVKARVQASSCIV--------LPLIGKKVLKQQVK-VFGS 656
++ +++ L ++ D+ER++ R+ A+ + ++ LP I KK+LK V +
Sbjct: 321 LIDSLSKILSEINDIERIITRISAKKGSPRDLIGLKNSLKQLPQI-KKILKGYVSPILQD 379
Query: 657 LVKGLRIAMDLLMLM 671
+K D+ L+
Sbjct: 380 FIKNFDDLKDIYQLI 394
>gi|296124289|ref|YP_003632067.1| DNA mismatch repair protein MutS [Planctomyces limnophilus DSM 3776]
gi|296016629|gb|ADG69868.1| DNA mismatch repair protein MutS [Planctomyces limnophilus DSM 3776]
Length = 891
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 183/328 (55%), Gaps = 42/328 (12%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIE--LFIE-------KASQWSEVIHAISC 750
L +E I +Y++ L AE+ SI +E LF + +A++ +++
Sbjct: 515 LKNYERYITPALKEYEDKV---LQAESRSIALEQQLFSDLRQKVSSRAAELRVTAESLAV 571
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF--ALGENGGL 808
+DVL SFA+ A+ Q P + + PVL+I+ HP L GG
Sbjct: 572 LDVLCSFAILATRR-----------QYVRPEIASE---PVLEIRQGRHPVLDQLLPTGGF 617
Query: 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLA 868
VPNDI LG S+ + L+TGPNM GKST +R L IL Q+G FVP E + LA
Sbjct: 618 -VPNDIRLG-GSNGLIQ---LITGPNMAGKSTYIRQAALLTILTQIGSFVPAESARIGLA 672
Query: 869 DTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928
D IF R+GA+D + G+STF+VE TETA +L AT SLVILDE+GRGTST+DG ++A+A
Sbjct: 673 DRIFARVGASDELGRGQSTFMVEMTETARILHSATASSLVILDEIGRGTSTYDGISLAWA 732
Query: 929 VFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYR 988
+ L + + CR FATHYH LT+ AS V ++A + + ++VF+++
Sbjct: 733 ITEFLHDAVGCRTFFATHYHELTQLSASLKSVMNWNVAV---------REHNDDVVFMHQ 783
Query: 989 LTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ GA +SYG+ V +AG+P V++ A
Sbjct: 784 IVPGAADKSYGIHVGRLAGLPGVVLDRA 811
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 169/391 (43%), Gaps = 62/391 (15%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ---- 325
++ ++Y VK Q+ +LFF++G FYEL+ DA++ + L +TL+ K +
Sbjct: 14 LTPMMQRYLEVKDQHPAAILFFRMGDFYELFYEDAKVAARILG--LTLTSRDKNSENPVP 71
Query: 326 -VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVD 383
G + ++K++ G++V EQ+E + AK ++ R++ +VTP T T D
Sbjct: 72 MAGFPYHALTGYLQKMIRAGHRVAICEQVEDPKAAKG-----MVKREVTQIVTPGTLTDD 126
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ P +LLA P G G A+++ + R T+ + + L ++
Sbjct: 127 SLLDPRETNLLA----AILP--GKSHSGLAWLELSTGRFICATL----PASQIHDELARL 176
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLV-------QL 496
P EV+ R + + G+ A+ P A E +L+ L
Sbjct: 177 QPAEVLTPERS---REDLTIARIRLGAWAVTERPPWAYR----PEEAHRLLLDQFGVATL 229
Query: 497 NGY-FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL 555
G+ F+G+SS ++A + G A G L+ ++ ++ + PY+ + L
Sbjct: 230 EGFGFSGNSSSTTQA-----TIEPGIIAAGALLEYVRETQKSQLIHLSRLEPYEPSQHLL 284
Query: 556 ------------------RMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
+ +G L+ +D VT G RLL W+ +PLK+ I RL+
Sbjct: 285 IDESTRRSLELTRTLRSNQREGSLLWAIDQTVTPMGARLLLEWLSNPLKERTAIEARLNA 344
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
V L+ + + + L+ D++RL R+
Sbjct: 345 VSELVVDLRTTQSLQEILKTGYDIQRLTARI 375
>gi|386814179|ref|ZP_10101403.1| DNA mismatch repair protein MutS [planctomycete KSU-1]
gi|386403676|dbj|GAB64284.1| DNA mismatch repair protein MutS [planctomycete KSU-1]
Length = 866
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 191/372 (51%), Gaps = 56/372 (15%)
Query: 652 KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
KVFG ++ I MD + + + + R P + D K LT E A D ++
Sbjct: 466 KVFGYYIEVTNIHMDNIPKTYIRKQTLKNAERFITPELKDYET---KVLTADERAKDLEY 522
Query: 712 PDYQNHDVTDLDAETLSILIELFI---EKASQWSEVIHAIS----CIDVLRSFAVTASMS 764
+LFI EK S ++ I IS IDVL + A AS +
Sbjct: 523 --------------------DLFIRIREKVSAFTPQIQKISETIALIDVLSTLANLASEN 562
Query: 765 SGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCL 824
M P I + + D PVL K + F VPNDI L D
Sbjct: 563 RYIM--PEITDSLELNII--DGRHPVLTRKLINESF---------VPNDINL----DGVN 605
Query: 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTG 884
+ +++TGPNM GKST +R L V++AQ+G F+P + V+ D IFTR+GA+D + G
Sbjct: 606 NKIMIITGPNMAGKSTYIRQVALLVLMAQIGSFIPAKEAVIGTVDRIFTRVGASDELSRG 665
Query: 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944
+STF+VE ETA++L AT SL+ILDE+GRGTSTFDG +IA+A+ + + I+ R LFA
Sbjct: 666 QSTFMVEMNETANILNNATARSLIILDEVGRGTSTFDGISIAWAITEYIYQHIHARTLFA 725
Query: 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAV 1004
THYH LT+ P V ++ GD E++FL ++ G +SYG+ VA
Sbjct: 726 THYHELTELALLFPGVINFNILVK--------EWGD-EIIFLRKIVEGGTDKSYGIHVAR 776
Query: 1005 MAGVPQKVVEAA 1016
+AG+P++V++ A
Sbjct: 777 LAGIPKEVIQRA 788
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 162/391 (41%), Gaps = 54/391 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK--CRQVGISESG 332
+QY +K Q+ D LLFF++G FYEL+ DA++ K L +T G+ G+
Sbjct: 3 RQYNEIKIQHKDALLFFRMGDFYELFFEDAKLASKVLGITLTSRSKGENSIPMAGVPHHS 62
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV- 391
+ + KL+ G+KV +QL+ E+AK ++ R + ++TP T + ++ D
Sbjct: 63 AESYIRKLIKAGHKVAICDQLQNPEEAKG-----IVDRGVTRIITPGTVTEDSLLEDKSN 117
Query: 392 -HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDA---SCAALG--ALLMQVSP 445
+L+A+ E N ++G +++D + R V I D A L LLM P
Sbjct: 118 NYLMALLETNT-------LFGLSWIDLSTGRFEVEDIQKDRLFDEFARLNPSELLM---P 167
Query: 446 KEVIYENRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDFLDASEVKKLVQL 496
+E + + ++ + +FS +A LT T L
Sbjct: 168 EETFHNHTAFVEKIRAEYNIMITARPDWEFSKDTAYHILTEHFGTT------------SL 215
Query: 497 NGYFNGSSSPWSKALENVMQH--DIGFSALGGLISHL-----SRLMLDDVLRNGDILPYK 549
G+ P A V+Q+ D ++L +I +R+++D + L +
Sbjct: 216 EGFDCEDVGPALGAAGAVIQYLKDTQKTSLRHIIKIQRYRADNRVLIDKATQQSLELT-Q 274
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R R +D T G RLLR W+ PL+ I R V L + E+
Sbjct: 275 TMRTHDREGSLLAIIDQTKTPMGARLLREWVISPLRISAEIKYRQVGVYELFEKPELRRE 334
Query: 610 VAQYLRKLPDLERLLGRVK-ARVQASSCIVL 639
+ L + D+ER+ ++ R A I L
Sbjct: 335 LRNILSNIYDIERISTKISCGRANARDLIAL 365
>gi|326473055|gb|EGD97064.1| DNA mismatch repair protein Msh2 [Trichophyton tonsurans CBS 112818]
Length = 935
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 158/290 (54%), Gaps = 22/290 (7%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA ++ + A RP I P+ + +K HP ++
Sbjct: 586 LAHLDVIVSFAHVSAHAPTAYVRPKIHPRGTGNTI----------LKEARHPCMEMQDDI 635
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 636 TFITNDVSLIRDESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 691
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 692 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 751
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN---SENYSKGDQELV 984
A+ +V I C LFATH+H LT +P AF + +E K QE+
Sbjct: 752 AISEHIVTEIKCFSLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVT 811
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
LYR+ G C +S+G+ VA + P KVV A A + E F SS
Sbjct: 812 LLYRVEPGVCDQSFGIHVAELVRFPDKVVNMARQKAEEL-----EDFTSS 856
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+LA+K + V G F D + + V D+ + +LL+Q+ KE +
Sbjct: 142 ILAVKAATKAKEMRHV--GVCFADASVRELGVSEFVDNDLYSNFESLLIQLGVKECLIPA 199
Query: 453 RGLCKEAQKALRKFSAGSAALELT--PAMAVTDFLDASEVKKLVQ--------------- 495
G K+ + A + A S + +T P A ++ +L++
Sbjct: 200 EGQKKDVELAKLRQIADSCGVAITERPVSAFGTKDIEQDLSRLLKDETGPAMLPQTDLKL 259
Query: 496 -------LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
L Y N S P + + +HD+ + LD LR +++P
Sbjct: 260 AMGSASALISYLNAMSDPSNFGQYQLYKHDLA-----------QYMKLDASALRALNLMP 308
Query: 548 YKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
RD M +LY L+ C T G RLL W+ PL + + I R +VE + ++E
Sbjct: 309 GP--RDS--MKNMSLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVIDTE 364
Query: 606 VVMVVAQ-YLRKLPDLERLLGRVK 628
+ + + +LR +PDL RL R +
Sbjct: 365 LRQTMQENHLRSIPDLYRLAKRFQ 388
>gi|302391923|ref|YP_003827743.1| DNA mismatch repair protein MutS [Acetohalobium arabaticum DSM 5501]
gi|302204000|gb|ADL12678.1| DNA mismatch repair protein MutS [Acetohalobium arabaticum DSM 5501]
Length = 893
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 194/353 (54%), Gaps = 44/353 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE---KASQWSEVIHAISCIDVLRSFAVTASMSSG 766
P+ + + L AE S+ +E LF E K +Q +E + ++ D++ V AS++
Sbjct: 511 PELKEKESKILGAEEKSVELEYQLFTEIREKVAQETERVQKVA--DIVAQLDVLASLAEV 568
Query: 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDC 823
A++ P+ N V+ I+ HP L E VPND + D D
Sbjct: 569 AINNNYCHPEV--------NASDVIDIEDGRHPVVEEMLEEESF--VPNDSYIDCDQD-- 616
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
R L++TGPNM GKST +R L V+++Q+G F+P + + + D IFTR+GA+D + T
Sbjct: 617 --RFLIITGPNMSGKSTYMRQVALMVLMSQIGSFIPADEAKIGIVDRIFTRVGASDDLTT 674
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRL 941
G+STF+VE E A++L ATQ+SLVILDE+GRGTST+DG +IA+AV + ++ I +
Sbjct: 675 GQSTFMVEMNEVANILNNATQNSLVILDEVGRGTSTYDGLSIAWAVTEYISDQSNIGAKS 734
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LFATHYH LT+ + P V ++A + + ++ FL ++ G +SYG++
Sbjct: 735 LFATHYHELTELESKLPGVKNYNVAVKEEGS---------DITFLRKIVPGKANDSYGIE 785
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIG---------ESFKSSEQRSEFSSLHE 1045
VA AGVP+ V++ A+ ++ I ES K +E ++E +S E
Sbjct: 786 VAKRAGVPKSVIDRANEVLEKLETEIDNYEQINNSLESEKVAEAKAEITSESE 838
Score = 110 bits (276), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 173/400 (43%), Gaps = 80/400 (20%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
K+++ +QY+++K +Y D +L F++G FYE++ DAE+ +EL+ +T GK ++
Sbjct: 3 KELTPMMQQYFSIKDEYDDAILLFRLGDFYEMFADDAELAARELELTLTSRNKGKGKKTP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
GI + + L+ +GY+V EQ+E + TN ++ R++V V+TP T +D
Sbjct: 63 MAGIPYHSAESYIATLIDKGYRVAICEQVEDPSE-----TNGLVKREVVRVITPGTVIDN 117
Query: 385 TIGPDA--VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
+ D +L A+ G +G A +D + + + + + L L +
Sbjct: 118 EMLDDKNNNYLSAVVANEEG-------FGIATIDISTGDFSTTELTGEEAQSNLIDELAR 170
Query: 443 VSPKE-------------VIYENRGLCKEAQKALRKFSAGSA------------------ 471
++P E + Y N+ L + +F+ A
Sbjct: 171 INPAECLVDTNLYEKTEVITYINQQLDPIINEIKERFNYSQAYDLLIDHFEVNSLDGFGC 230
Query: 472 ---ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLI 528
+T A AV DFL ++ + L LN S+ + N ++
Sbjct: 231 EDLKFAVTAAGAVLDFLIETQKRTLGHLNQLTTYSTKDYMTLDANTRRN----------- 279
Query: 529 SHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDV 587
L L +R+ YK G L+ LD VT+ G R L+ W+ PL DV
Sbjct: 280 -----LELTKTIRDQ---SYK---------GSLLWVLDQTVTAMGGRKLQKWLEQPLLDV 322
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
EGINNRLD V L N + + L ++ DLERL+ ++
Sbjct: 323 EGINNRLDAVGELKDNIFLKEELKDNLTEVYDLERLMSKI 362
>gi|291614720|ref|YP_003524877.1| DNA mismatch repair protein MutS [Sideroxydans lithotrophicus ES-1]
gi|291584832|gb|ADE12490.1| DNA mismatch repair protein MutS [Sideroxydans lithotrophicus ES-1]
Length = 880
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 157/277 (56%), Gaps = 29/277 (10%)
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
Q + AI+ +DVL +FA A+ + + PQ + A Q N +KG HP
Sbjct: 570 QLQRIAAAIAELDVLATFAERAATLNFSA------PQFADDA--QIN-----IVKG-RHP 615
Query: 800 FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
+ PND L + RTLL+TGPNMGGKST +R + +LA +GCFVP
Sbjct: 616 VVEAQVDQF-TPNDTTLNDAR-----RTLLITGPNMGGKSTYMRQVAIIALLAHVGCFVP 669
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
+ VL D IFTR+GA+D + +G STF+VE TE A++L AT SLV++DE+GRGTST
Sbjct: 670 AQEAVLGEIDQIFTRIGASDDLASGRSTFMVEMTEAANILHNATDKSLVLVDEIGRGTST 729
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
FDG A+AYA+ R L+E LFATHY LT+ + H+A +S
Sbjct: 730 FDGLALAYAIARHLLELNRSYTLFATHYFELTRLAEEFKQLANVHLAAIEHQHS------ 783
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+VFL+ + GA +SYGLQVA +AGVP V+ +A
Sbjct: 784 ---IVFLHSVNEGAASQSYGLQVAALAGVPNSVIRSA 817
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 144/351 (41%), Gaps = 60/351 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +K+++ D LLF+++G FYEL+ DA K LD ITL+ G I +G+
Sbjct: 14 QQYLRIKAEHNDKLLFYRMGDFYELFHDDAVRAAKLLD--ITLTQRGASNGSPIKMAGVP 71
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAVH 392
A E+ +AR K+G E + EQ T+ + RK+V +VTP T D
Sbjct: 72 YHAAEQYLARLVKMG--ESVAICEQIGDPATSKGPVERKVVRIVTPGTVTDSA------- 122
Query: 393 LLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
LL K N S G A+++ A+ + +V D L A L ++ P E+++
Sbjct: 123 LLEEKRDNLLLALHQRSGKLGLAWLNLASGQFFVCETATD----NLAAELERLQPSEILH 178
Query: 451 -ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
E+ L A + LE F + L G+
Sbjct: 179 AEDAALQASIHAAFKTLPVWHFDLETARRGLCQQF-------ATIDLAGF---------- 221
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG---------Q 560
+ +G A G L+ + + + Y R +RMD Q
Sbjct: 222 ---GCDDYTVGLEAAGALLGYAKLTQGQSISHIRSVQVYSADR-YVRMDAATRRNLEITQ 277
Query: 561 TL----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TL LD+C T+ G RLL +W+ HPL+D + RL+ VE L+
Sbjct: 278 TLRGEPAPTLLSLLDTCATNMGSRLLANWLHHPLRDRNVLGARLEAVEQLL 328
>gi|37520602|ref|NP_923979.1| DNA mismatch repair protein MutS [Gloeobacter violaceus PCC 7421]
gi|44888168|sp|Q7NLT8.1|MUTS_GLOVI RecName: Full=DNA mismatch repair protein MutS
gi|35211596|dbj|BAC88974.1| DNA mismatch repair protein [Gloeobacter violaceus PCC 7421]
Length = 890
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 144/243 (59%), Gaps = 30/243 (12%)
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
G VPND +G +++ P ++LTGPNM GKS+ +R L +LAQ+G FVP VL
Sbjct: 662 AGFFVPNDARMGAEAE---PDLIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARGAVL 718
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
+AD IFTR+GA D + TG+STF+VE TETA++L AT SLV+LDE+GRGT+TFDG AI
Sbjct: 719 GVADRIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAI 778
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL-- 983
A+AV L I CR +FATHYH L E AS S NY QEL
Sbjct: 779 AWAVAEYLASHIRCRTIFATHYHEL-NELAS------------VVSGVANYQVTVQELAD 825
Query: 984 --VFLYRLTSGACPESYGLQVAVMAGVPQKV----------VEAASHAALAMKKSIGESF 1031
VFL+R+T G SYG++V +AG+P V VE S A+ ++ S G +
Sbjct: 826 RIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVARARTVLAQVEQHSQIAVGLRDSNGSAS 885
Query: 1032 KSS 1034
+S+
Sbjct: 886 ESA 888
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 164/419 (39%), Gaps = 89/419 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG------VGKCRQVGI 328
+QY VK+Q+ LL +++G FYE + DAEI +EL+ I L+G +G+ GI
Sbjct: 26 QQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSRELE--IVLTGRQAGDKIGRIPMAGI 83
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRK----------------- 371
++ +L+ +GY V +Q+E+ EQAK R + ++R+
Sbjct: 84 PHHALERYCAQLIEKGYAVVICDQVESPEQAKERARQAKVARRSKSDGDAPLLPLLLEDG 143
Query: 372 ----------------LVNVVTPSTTVDGT--IGPDAVHLLA-IKEGNCGPDNGSVVYGF 412
+ V+TP T ++ +G +L A ++ G C +G
Sbjct: 144 EQIDWEGAESVLVRRAVTRVLTPGTVLEDQLLVGRRNNYLAALVQAGEC--------WGL 195
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
AF D + V + S AL L+++ P EV+ G + LR A S
Sbjct: 196 AFADISTGEFQVTQLE---SAEALVQELLRLQPAEVLLS--GDAPDPLVLLRPGEASSER 250
Query: 473 LELTPA-----MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL 527
E P+ + + + E ++L+ G S EN+ + A GGL
Sbjct: 251 PECLPSQFCYTLRPRRYFELDEARRLLMET---FGVRSLEGFGCENL---PLAVRAAGGL 304
Query: 528 ISHL--------------------SRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSC 567
+ HL L+LD R L V RD + LD
Sbjct: 305 VQHLLETQRGVSIPLEGIRTYTLSQYLILDHQTRRNLELTQTV-RDGAQYGSLLWALDRT 363
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
T G R LR W+ PL D I R D V L + + + L + DLERL GR
Sbjct: 364 RTVMGGRALRRWLLQPLLDTRAIGRRQDSVAELYDEGLLRERLQRILESVYDLERLAGR 422
>gi|421675606|ref|ZP_16115526.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC065]
gi|421693011|ref|ZP_16132658.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-116]
gi|404559064|gb|EKA64336.1| DNA mismatch repair protein MutS [Acinetobacter baumannii IS-116]
gi|410381868|gb|EKP34429.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC065]
Length = 881
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDLE 831
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|212212527|ref|YP_002303463.1| DNA mismatch repair protein MutS [Coxiella burnetii CbuG_Q212]
gi|212010937|gb|ACJ18318.1| DNA mismatch repair protein [Coxiella burnetii CbuG_Q212]
Length = 871
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 167/311 (53%), Gaps = 28/311 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ IEK + AI+ +DVL + A A + N Q P
Sbjct: 551 LLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNAPQFCDYP 596
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++KI+ HP +PNDI L E R L++TGPNMGGKST +R T L
Sbjct: 597 IIKIEAGRHPIVENVMTDPFMPNDIHLDEKR-----RMLIITGPNMGGKSTYMRQTALIT 651
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L AT++SLV+
Sbjct: 652 LLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVL 711
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++AYA L ++ LFATHY LT ++ P V H+
Sbjct: 712 MDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAV- 770
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +++++FL+ L G +SYGLQVA +AG+P+ V++ A ++ +
Sbjct: 771 --------EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEELENPVIS 822
Query: 1030 SFKSSEQRSEF 1040
+ +Q F
Sbjct: 823 ETQQPQQNELF 833
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/394 (22%), Positives = 159/394 (40%), Gaps = 88/394 (22%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 34 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 93
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 94 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 148
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 149 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 197
Query: 449 IYENRG--------------------------LCKEAQ-KALRKFSAGSAALELTPAMAV 481
+ LC++ Q K+L F L +T A
Sbjct: 198 LISEENSVHPLKADSIKRRPPWEFDHATALTLLCQQFQTKSLDGFGITHLPLAITAAGC- 256
Query: 482 TDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
L+Q Y S+ P +++ + F I +RL L+ +
Sbjct: 257 -----------LLQYVNYTQKSALPHIHSIQAEQNEEALF------IDANTRLNLELI-- 297
Query: 542 NGDILPYKVYRDCLRMDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
+ G+ ++ LD T+ G RLLR WI PL+D + R +
Sbjct: 298 -------------TNLQGEEVHSLAWLLDHTATAMGSRLLRRWINRPLRDQILLQQRQNA 344
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
V L++ + + LR + DLER++ R+ R
Sbjct: 345 VSTLLEKRNYSEIY-ENLRHIGDLERIVARIALR 377
>gi|408399575|gb|EKJ78674.1| hypothetical protein FPSE_01162 [Fusarium pseudograminearum CS3096]
Length = 930
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 164/297 (55%), Gaps = 12/297 (4%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ ++ AS + V+ ++ I L V S++ ++H P P +
Sbjct: 568 TQSSLVHEVVQVASSYCPVLERLAGI--LAHLDVIVSLAHASVHAP---ESYVRPKIHAR 622
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + ++ HP ++ + ND+ L D L ++TGPNMGGKST +R T
Sbjct: 623 GEGQTI-LREARHPCMELQDDVQFITNDVELTRDKSSFL----IITGPNMGGKSTYIRQT 677
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 678 GVIALMAQVGCFVPCAEAELTIYDSILARVGASDSQLKGVSTFMAEMLETANILKSATSE 737
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+++DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT +P V H+
Sbjct: 738 SLIVIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTALADQYPQVQNLHV 797
Query: 966 ACAFKSNSENYSKGD--QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
S+ D +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 798 TAHIGGTDAAASEADAKREVTLLYKVAPGVCDQSFGIHVAELVRFPDKVVRMAKRKA 854
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL I R +VE ++E+ + ++LR +PDL R
Sbjct: 323 LNHCKTPVGSRLLAQWLKQPLMSKNEIEKRQQLVEAFYVDTELRQTLQEEHLRSIPDLYR 382
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGHIIPS 680
L R + GK L+ V+ + +++ G + +M E + P
Sbjct: 383 LSKRFQR-------------GKANLEDVVRAYQVVIRLPGFIGTFEGIM---DENYKDP- 425
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
L + + D SD L K E +D D D +
Sbjct: 426 LDEAYTTKLRDLSDSLGKLQDMVEQTVDLDALDRHEY 462
>gi|302657750|ref|XP_003020589.1| hypothetical protein TRV_05311 [Trichophyton verrucosum HKI 0517]
gi|291184439|gb|EFE39971.1| hypothetical protein TRV_05311 [Trichophyton verrucosum HKI 0517]
Length = 942
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 158/290 (54%), Gaps = 22/290 (7%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA ++ + A RP I P+ + +K HP ++
Sbjct: 593 LAHLDVIVSFAHVSAHAPTAYVRPKIHPRGTGNTI----------LKEARHPCMEMQDDI 642
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 643 TFITNDVSLIRDESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 698
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 699 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 758
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN---SENYSKGDQELV 984
A+ +V I C LFATH+H LT +P AF + +E K QE+
Sbjct: 759 AISEHIVTEIKCFSLFATHFHELTALEERYPKAVSNLHVVAFIGDGPAAEGKQKKKQEVT 818
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
LYR+ G C +S+G+ VA + P KVV A A + E F SS
Sbjct: 819 LLYRVEPGVCDQSFGIHVAELVRFPDKVVNMARQKAEEL-----EDFTSS 863
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+LA+K + V G F D + + V D+ + +LL+Q+ KE +
Sbjct: 142 ILAVKAATKAKEMRHV--GVCFADASVRELGVSEFVDNDLYSNFESLLIQLGVKECLIPA 199
Query: 453 RGLCKEAQKALRKFSAGSAALELT--PAMAVTDFLDASEVKKLVQ--------------- 495
G K+ + A + A S + +T P A ++ +L++
Sbjct: 200 EGQKKDVELAKLRQIADSCGVAITERPVSAFGTKDIEQDLSRLLKDETGPAMLPQTDLKL 259
Query: 496 -------LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILP 547
L Y N S P + + +HD+ + LD LR +++P
Sbjct: 260 AMGSASALISYLNAMSDPSNFGQYQLYKHDLA-----------QYMKLDASALRALNLMP 308
Query: 548 YKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
RD M +LY L+ C T G RLL W+ PL + + I R +VE + ++E
Sbjct: 309 GP--RDS--MKNMSLYGLLNHCKTPVGGRLLAQWLKQPLMNHKDIEKRQQLVEAFVTDTE 364
Query: 606 VVMVVAQ-YLRKLPDLERLLGRVK 628
+ + + +LR +PDL RL R +
Sbjct: 365 LRQTMQEHHLRSIPDLYRLAKRFQ 388
>gi|425772390|gb|EKV10794.1| DNA mismatch repair protein Msh3 [Penicillium digitatum Pd1]
gi|425773311|gb|EKV11670.1| DNA mismatch repair protein Msh3 [Penicillium digitatum PHI26]
Length = 1132
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 153/278 (55%), Gaps = 13/278 (4%)
Query: 750 CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP 809
CI L + S++ A+ + P+ A L I+ HP
Sbjct: 825 CIQSLATLDCLLSLADIALQPGYVKPEYTEEAS--------LHIEQGRHPMVEQLLTDTY 876
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPND L D R LL+TGPNMGGKS+ +R L I+ Q+G +VP L L D
Sbjct: 877 VPNDTNLQHDGT----RALLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAASARLGLLD 932
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+FTR+GA D ++ GESTF+VE +ETA +L++AT SLVILDELGRGTST DG AIA AV
Sbjct: 933 AVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAV 992
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+V I LF THY L++ S P L+++ F + ++ +GD E+ FLY +
Sbjct: 993 LDHMVRSIQSLTLFITHYQHLSRMVHSFPDHALRNVHMRF-TETDKDKEGDGEITFLYEV 1051
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
T G SYGL VA +A +P V++ A + +++SI
Sbjct: 1052 TEGVAHRSYGLNVARLASLPSAVIDVARQKSAELEESI 1089
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 104/428 (24%), Positives = 171/428 (39%), Gaps = 80/428 (18%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ +KQ +K Q M+ +L +VG + + DA I KEL D +
Sbjct: 211 KLTPMEKQVIEIKRQNMNTVLVIEVGYKFRFFGEDARIAAKELGIVCIPGKFRFDEHPSE 270
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ +G+ I + V++LV G+KVG + Q+ET+ +A + N+ RKL N+
Sbjct: 271 AHIGRFASASIPVHRLHVHVKRLVTAGHKVGVVRQIETAALKAAGDNRNAPFVRKLTNLY 330
Query: 377 TPSTTVDGTIGPDAV------------HLLAIKEGNC-GPDNGSVVY-GFAFVDCAALRV 422
T T +D G ++ + E GP+N V+ G V A V
Sbjct: 331 TKGTYIDDAEGLQGPAPAAGGASPATGYMFCMTETIAKGPENDERVHVGIVAVQPATGDV 390
Query: 423 WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT 482
D + + L+ ++P E++ G A + L + +GS A+
Sbjct: 391 IYDDFEDGFMRSEIETRLLHIAPCEILIV--GEMSRASEKLVQHLSGSKMNVFGDAVR-- 446
Query: 483 DFLDASEVKKLV------QLNGYFNGSSSPWS--------KALENVM----QHDIGFSAL 524
L+ ++ KK ++G++ G S K L+NV+ Q I SA+
Sbjct: 447 --LERAQKKKTSAAEAHSHVSGFYAGKMKATSTEEDAQAAKLLQNVLDLPEQVTICLSAM 504
Query: 525 GGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY--------------------L 564
I H++ L+ V R + M+G TL L
Sbjct: 505 ---IEHMTEYGLEHVFDLTKYFQPFSARSHMLMNGNTLVSLEIYQNQTDLSTKGSLFWTL 561
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL-----PD 619
D T G+R+LR W+ PL D + R + VE L+ + V V + +R L D
Sbjct: 562 DRTQTRFGQRMLRQWVGRPLLDKVRLEERTNAVEELIDPARAVPV--ERVRGLLCKVKSD 619
Query: 620 LERLLGRV 627
LE+ L R+
Sbjct: 620 LEKSLIRI 627
>gi|322706947|gb|EFY98526.1| DNA mismatch repair protein msh3 [Metarhizium anisopliae ARSEF 23]
Length = 1101
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 159/296 (53%), Gaps = 22/296 (7%)
Query: 732 ELFIEKASQWS---EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGG 788
+L E +S + + + +++ +D L S + A+ ++P LP S P V G
Sbjct: 789 DLLAEISSDYQPLRDAVSSLASLDCLLSLSKVAAQP--GYNKPTFLPSSSEPTVAITQG- 845
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
HP A +P L S P L+TGPNMGGKS+ +RA L
Sbjct: 846 --------RHPIAEHTIESGYIPFSTTLAHPS----PLAHLITGPNMGGKSSYVRALALI 893
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LAQ+G FVP + L+L D I TR GA D + GESTF+VE +ETA +L+ AT SLV
Sbjct: 894 VLLAQIGSFVPADAISLTLCDAIHTRTGARDNLFAGESTFMVEVSETARILRSATPRSLV 953
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTST DG AIA AV + C LF THY L + P V+ HM
Sbjct: 954 ILDELGRGTSTHDGAAIAQAVLEHVATETRCLTLFITHYQNLARVVEGLPGVSNLHM--R 1011
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
FK+ GD+E+ FLY + G SYGL VA +A +P+KV++ A++ + M+
Sbjct: 1012 FKAGKG--PDGDEEITFLYEVGEGVAHRSYGLNVARLARIPKKVIDVAANKSGEME 1065
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 162/410 (39%), Gaps = 61/410 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLSGVGKCR 324
Q+ ++K +++D +L +VG + + DA KEL D + + + +
Sbjct: 205 QFLDIKRKHLDTILIVEVGYKFRFFGEDARTAAKELGIVCIPGKMRYDEHPSEAHLDRFA 264
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVTPSTTVD 383
+ + ++LVA G+KVG + Q+ET+ KA + N+ RKL NV T T +D
Sbjct: 265 SASVPVHRLSVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNTPFVRKLTNVYTKGTYID 324
Query: 384 --GTI------GPDAVHLLAIKEGN---CGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
G + P +LL I E G D V G V A + D
Sbjct: 325 EVGELDQRAEGAPAGGYLLCITETKSKGSGTDE-KVDVGILAVQPATGDIIHDNFEDGFM 383
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA----------ALELTPAMA-- 480
+ + L+ +SP E + L K K ++ S S + P MA
Sbjct: 384 RSEIETRLLHISPCEFLIVG-DLTKGTDKLVQHLSGSSTNVFGDRSRVERVPRPPTMAAE 442
Query: 481 ----VTDFL-----DASEVKKLVQLNGYFNGSSSPWSKALENVMQH--DIGFSALGGLIS 529
VT F D S+ + L P + L ++ H + G + L
Sbjct: 443 AYSHVTQFYADKLKDTSQNETASALLDKVLKLPEPVTICLSAMINHLKEYGLEHIFDLTK 502
Query: 530 HLSRLML-DDVLRNGDIL-PYKVYRDCL-RMDGQTLY--LDSCVTSSGKRLLRSWICHPL 584
+ +L NG L +VYR+ + +L+ LD +T G+RLLR W+ PL
Sbjct: 503 YFQSFTTRSHMLVNGTTLESLEVYRNSTDHAERGSLFWALDKTLTRFGQRLLRKWVGRPL 562
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
D + ++ RL VE L+ V DLE+LL K ++ S
Sbjct: 563 LDQDRLDERLAAVEELLNKQSTAPV--------DDLEKLLATTKTDLERS 604
>gi|282858637|ref|ZP_06267795.1| DNA mismatch repair protein MutS [Prevotella bivia JCVIHMP010]
gi|282588555|gb|EFB93702.1| DNA mismatch repair protein MutS [Prevotella bivia JCVIHMP010]
Length = 889
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 176/332 (53%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISC-------ID 752
L Q E I + +Y++ + D L++ +LF+E E I I +D
Sbjct: 510 LAQAERYITQELKEYED-KILGADERILALEGKLFMELIRDMQEFIPQIQINATLVAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF T + RP++ + VL IK HP LGE
Sbjct: 569 CLLSF--TRASEEHHYVRPVV------------DDSEVLDIKQGRHPVIETQLPLGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL D + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + L
Sbjct: 613 -YVPNDVLLDNDRQ----QIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARVGL 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISVGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R R LFATHYH L E + H K+ + + + + +++F
Sbjct: 728 AIVEYLHEQPRAKARTLFATHYHELN-EMEKNFH--------GIKNYNVSVKEVNGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 779 LRKLEKGGSEHSFGIHVADIAGMPRSIVKRAN 810
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 170/392 (43%), Gaps = 59/392 (15%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL----SGVGKC 323
K M+ KQ++++K+++ D LL F+ G FYE Y DA K L +T G+
Sbjct: 6 KGMTPMMKQFFSMKAKHPDALLLFRCGDFYETYHDDAIDAAKVLGITLTKRNNGGNSGEI 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLE----TSEQAKARH----TNSVISRKLVNV 375
G +D + KL+ G +V +QLE E+ K + + ++ R + +
Sbjct: 66 AMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSPMDKMVKRGITEL 125
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
VTP + + L KE N G G +F+D + G D
Sbjct: 126 VTPGVAMGDNV-------LNYKENNFLAAVHFGKQACGVSFLDISTGEFLTGEGTYDYVE 178
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
+G+ SPKE++Y +R KE + F E+ + F + + +KL
Sbjct: 179 KLIGSF----SPKEILY-DRAYKKEFET---HFGTKLCTFEMDDWV----FTEQTANQKL 226
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
++ +F G+++ ++++ H+ G A G ++ +L L +R+ L
Sbjct: 227 LK---HF-GTANLKGFGVDHL--HN-GIIAAGAIMQYLE-LTQHTQIRHITALTRIEEEK 278
Query: 554 CLRMDGQTL------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
+RMD T+ +D+ +T G R+LR W+ PLK V+ I RLD
Sbjct: 279 YVRMDRFTIRSLELVSTMNDEGTSLLNVIDNTITPMGGRMLRRWMVFPLKTVKPIEERLD 338
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
VVEY K+ + + + ++ DLER++ +V
Sbjct: 339 VVEYFFKHQDFRDTINEQFHRIGDLERIISKV 370
>gi|428771150|ref|YP_007162940.1| DNA mismatch repair protein MutS [Cyanobacterium aponinum PCC 10605]
gi|428685429|gb|AFZ54896.1| DNA mismatch repair protein MutS [Cyanobacterium aponinum PCC 10605]
Length = 873
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 177/337 (52%), Gaps = 45/337 (13%)
Query: 718 DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
D+ + E L L EK + ++ AI+ +DVL A A +
Sbjct: 557 DLAKFEYEIFVNLRSLVAEKTEEIRKIAKAIAAMDVLSGLAELA-----------VYQDY 605
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
P + +D ++KIK HP G G+ VPN +LG + P ++LTGPN
Sbjct: 606 NRPEITEDR---IIKIKNGRHPVVEKLLGFGMFVPNSTVLGTEK---APDLIILTGPNAS 659
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKS LR L ++AQ+G F+P E LS+ D IFTR+GA D I TG+STF+VE ETA
Sbjct: 660 GKSCYLRQVGLIQLMAQIGSFIPAESAKLSICDRIFTRVGAVDDIATGQSTFMVEMNETA 719
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
++L AT+ SLV+LDE+GRGT+TFDG +IA+AV L I R +FATHYH L E AS
Sbjct: 720 NILNHATEKSLVLLDEIGRGTATFDGLSIAWAVAEYLAIEIQSRTIFATHYHELN-ELAS 778
Query: 957 HPHVTLQHMACAFKSNSENYS----KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
N NY + + E++FL+ + +G +SYG++ +AG+P V
Sbjct: 779 ------------ILENVANYQVTVKELENEIIFLHEVKAGGADKSYGIEAGRLAGLPPVV 826
Query: 1013 VEAA----------SHAALAMKKSIGESFKSSEQRSE 1039
++ A S A+ ++K+I + S ++ +E
Sbjct: 827 IKRAKQVMSQIEKHSKIAIGLRKNIKKLTPSKQENTE 863
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/405 (27%), Positives = 175/405 (43%), Gaps = 67/405 (16%)
Query: 262 IPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS--- 318
I P+ L M + Y VK QY + LL ++VG F+E + DA +EL+ IT
Sbjct: 21 INPQELTPMY---QHYVEVKEQYPNALLLYRVGDFFECFFQDAVTIAQELELVITSKDAG 77
Query: 319 -GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVT 377
VG+ G+ +D +LV +GY V +Q+E + A A ++ R + ++T
Sbjct: 78 KNVGRIAMTGVPHHALDRYARQLVEKGYAVVICDQVEDAATATAE--KRLVKRAITKLLT 135
Query: 378 PSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVV-----YGFAFVDCAALRVWVGTINDDAS 432
P GTI D +L K+ N +VV +G A+ D + + T N D S
Sbjct: 136 P-----GTITED--EMLPSKQNNFL---AAVVVAKEHWGLAYADISTGEFFT-TQNKDLS 184
Query: 433 CAALGALLMQVSPKEVIY-----ENRGLCKEAQKA--LRKFSAGSAALELTPAMAVTDFL 485
+L L+++ P E+++ + L + QK+ L F L A
Sbjct: 185 --SLATELLRLQPAEILFPVNAPDINSLLRPGQKSDYLPNFLPDCFCYSLRSHKA----F 238
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALENV-MQH-DIGFSALGGLISHLSRLMLDD----- 538
D E K + + FN K+LE V +H + A GGL+ ++ +
Sbjct: 239 DIHEAKPRLLME--FN------LKSLEGVGCEHLPLAIRAAGGLLEYVQDTQKANQVPLQ 290
Query: 539 VLRNGDILPYKVYRDCLRMD-------------GQTLY-LDSCVTSSGKRLLRSWICHPL 584
++R+ ++ Y V R + G L+ LD T+ G R LR W+ PL
Sbjct: 291 LIRSYNVSDYLVLDSTTRRNLEITSTVRDNTFHGSLLWALDRTCTAMGGRALRRWLLQPL 350
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+ GI R D + LM N + + + L+ + DLER+ GRV A
Sbjct: 351 LNKRGIIARQDSIAELMDNLPLREAIREILKSIYDLERITGRVSA 395
>gi|257887935|ref|ZP_05667588.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733]
gi|430842407|ref|ZP_19460322.1| DNA mismatch repair protein mutS [Enterococcus faecium E1007]
gi|431036500|ref|ZP_19492270.1| DNA mismatch repair protein mutS [Enterococcus faecium E1590]
gi|431753029|ref|ZP_19541707.1| DNA mismatch repair protein mutS [Enterococcus faecium E2620]
gi|257823989|gb|EEV50921.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733]
gi|430493488|gb|ELA69791.1| DNA mismatch repair protein mutS [Enterococcus faecium E1007]
gi|430563040|gb|ELB02271.1| DNA mismatch repair protein mutS [Enterococcus faecium E1590]
gi|430612777|gb|ELB49808.1| DNA mismatch repair protein mutS [Enterococcus faecium E2620]
Length = 881
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADRSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y S + KA+E H + L L +R G
Sbjct: 231 YLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|14577935|gb|AAK68860.1|AF091119_1 DNA mismatch repair protein HexA [Lactococcus lactis]
Length = 841
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 185/336 (55%), Gaps = 33/336 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + +G +++IKG H G
Sbjct: 535 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TDGSRIVEIKGGRHAVVEAVMGA 581
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 582 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 636
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKA+ SL+I DELGRGT+T+DG A+A
Sbjct: 637 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGRGTATYDGMALA 696
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + + I + LFATHYH LT + H+ H+A ++ + + FL
Sbjct: 697 QAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGN---------VTFL 747
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS--SLH 1044
+++T G +SYG+ VA +AG+PQ ++E A ++ + K ++++ + S
Sbjct: 748 HKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLFDFT 807
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
E + I + R N D+ + + L LW ELK+S
Sbjct: 808 ENSSEIIEKIKR--QNVDNMTSREALNFLW-ELKDS 840
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 171/385 (44%), Gaps = 72/385 (18%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGID-----DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKDKHYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ +E++ G + + L+ F E + +++ L+ E L+ L+G
Sbjct: 166 LKAREIV---AGFTLD-ESQLKVF-------ERQMNLLISEQLEIPE-NLLIDLSGL--- 210
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ-- 560
ALEN L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 ------TALEN--------QVASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFATK 255
Query: 561 ----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 256 SSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLISNSAIQKRMEIVQIFLD 315
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 316 HFFERSDLIEALKGVYDLERLASRV 340
>gi|387127529|ref|YP_006296134.1| DNA mismatch repair protein MutS [Methylophaga sp. JAM1]
gi|386274591|gb|AFI84489.1| DNA mismatch repair protein MutS [Methylophaga sp. JAM1]
Length = 849
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 161/536 (30%), Positives = 252/536 (47%), Gaps = 91/536 (16%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNR------------LDVVEYLMKN----SEVV 607
LD+ VT G RLLR W+ P +D+ + R + V+ L+K +V
Sbjct: 291 LDNTVTPMGTRLLRRWLLQPKRDLTTLQQRQAAIGNLIEQDVIAAVQTLLKPLGDIERIV 350
Query: 608 MVVA-------------QYLRKLPDLERLLGRVKARVQ-------ASSCIVLPLIGKKVL 647
VA + L LP+L + L +AR+ + +L L+ + ++
Sbjct: 351 TRVALSSARPRDFVQLRRMLTALPNLHQSLSGTQARLLKQIDRELGTFPELLELLNRAII 410
Query: 648 KQQ---VKVFGSLVKGLRIAMDLLMLMHKEGH-IIPSLS-----RIFKPPIFDGSDGLDK 698
++ ++ G + +G +D L +H + + +L R + G + +
Sbjct: 411 EEPPALIRDGGVIAEGYHAELDRLRNLHLNANDFLRNLEQRERERTGVSTLKVGYNKVHG 470
Query: 699 FLTQFEAAIDSDFP-DYQ-----------------NHDVTDLDAETLSILIE--LFIEKA 738
F + A + + P DYQ H+ L A ++ +E L+ E
Sbjct: 471 FFIEISRAHNIELPADYQRRQTLKNAERYITAELKTHEDQVLSASEKALALEKSLYEELF 530
Query: 739 SQWSEVIHAIS-CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
+ A++ C L V ++S A Q+ N Q L I+
Sbjct: 531 KLIHPELAALTYCAAALAELDVLTNLSERA--------QTLNYVAPQLTAEQSLSIQAGR 582
Query: 798 HPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
HP PND+ L E S L++TGPNMGGKST +R T L I+A +G +
Sbjct: 583 HPVVEAVQKTHFCPNDLQLTEQS------MLVITGPNMGGKSTYMRQTALIAIMAYMGSY 636
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + V+ D IFTR+GA+D + +G STF+VE E A++L A+ SLV++DE+GRGT
Sbjct: 637 VPADSAVIGPIDQIFTRIGASDDLASGRSTFMVEMNEAANILNNASAQSLVLMDEVGRGT 696
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
STFDG A+A++ +LV I LFATHY +T+ L AC ++ +
Sbjct: 697 STFDGLALAWSCAEKLVRDIGAYTLFATHYFEMTQLPG------LYDKACNVHLDAIEH- 749
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH--AALAMKKSIGESF 1031
GD+ +VFL++L GA +SYGLQVA +AGVP V++AA H AAL ++++G +
Sbjct: 750 -GDK-IVFLHQLKPGAANQSYGLQVAQLAGVPNDVIQAAKHKLAALETQRTVGTNL 803
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +K+++ ++LLF+++G FYEL+ DA + LD ITL+ G I +G+
Sbjct: 12 QQYLRIKAEHPELLLFYRMGDFYELFFDDAHKAAELLD--ITLTARGNSNGAPIPMAGVP 69
Query: 335 -DAVEKLVAR----GYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
A E +AR G V EQ+ +K + RK+V V+TP T D
Sbjct: 70 YHAAEGYLARLLKGGVAVAICEQIGDPATSKG-----PVERKVVRVLTPGTLTD 118
>gi|254557089|ref|YP_003063506.1| DNA mismatch repair protein MutS [Lactobacillus plantarum JDM1]
gi|254046016|gb|ACT62809.1| DNA mismatch repair protein [Lactobacillus plantarum JDM1]
Length = 896
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 38/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ ++H+ L+AE+ S +E LF ++KA Q + + A++ IDVL+SFAV +
Sbjct: 496 PELKSHESLILEAESHSTDLEYQLFTKVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
RP L +S + LKI HP G VPN++ + D
Sbjct: 556 --DYHFVRPK-LTKSHD-----------LKIVDGRHPVVEKVMGNQSYVPNNVTMSPDE- 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VI+AQ+GCFVP + L + D IFTR+GATD +
Sbjct: 601 ----TVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIFTRIGATDDL 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + LQ AT +SLV+ DE+GRGT+T+DG A+A A+ + I+ +
Sbjct: 657 ISGQSTFMVEMQEANNALQHATVNSLVLFDEIGRGTATYDGMALAQAIIEFVHNHIHAKT 716
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ D ELVFL+++ GA +SYG+
Sbjct: 717 LFSTHYHELT---------ALDQELSGLRNVHVGATEQDGELVFLHKVEPGAADKSYGVH 767
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +AG+P ++E A+
Sbjct: 768 VAKLAGMPTSLLERAN 783
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 48/368 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY+ VK+QY D LF+++G FYE++ DA G + L+ +T S G+
Sbjct: 12 RQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCGVPHR 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT++
Sbjct: 72 AVQNYIDILVDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTTLERGAEQAKT 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
+L A+ + + YGFA+ D + L+ V T ND L L + KE
Sbjct: 127 NNYLTALIQRDQQ-------YGFAYADLSTGELKTSVLTTND-----TLINELTSLQTKE 174
Query: 448 VIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVT----DFLDASEVKKLVQLNGYFNG 502
++ ++ + + + ++ S +TP ++ D E + + +L Y
Sbjct: 175 IVVDD-SVASDLRDQIKTLGILISEQNNVTPQAELSYLTQDLTVDLEQQVVERLLMYITV 233
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ L+ + ++ + + H S+ L L +R G + G
Sbjct: 234 TQKRSLAHLQKAIAYEPSYFL---KLDHNSKYNLELMKSIRTG------------KKQGT 278
Query: 561 TLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+L D T+ G RLL+ WI PL I R + V L+ + + + L K+ D
Sbjct: 279 LLWLLDETKTAMGGRLLKQWIDRPLIVKADIETRQNKVATLLDHYFERSNLQEELTKVYD 338
Query: 620 LERLLGRV 627
LERL GRV
Sbjct: 339 LERLAGRV 346
>gi|424900030|ref|ZP_18323572.1| DNA mismatch repair protein MutS [Prevotella bivia DSM 20514]
gi|388592230|gb|EIM32469.1| DNA mismatch repair protein MutS [Prevotella bivia DSM 20514]
Length = 879
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/332 (37%), Positives = 176/332 (53%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISC-------ID 752
L Q E I + +Y++ + D L++ +LF+E E I I +D
Sbjct: 500 LAQAERYITQELKEYED-KILGADERILALEGKLFMELIRDMQEFIPQIQINATLVAHLD 558
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF T + RP++ + VL IK HP LGE
Sbjct: 559 CLLSF--TRASEEHHYVRPVV------------DDSEVLDIKQGRHPVIETQLPLGEQ-- 602
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL D + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + L
Sbjct: 603 -YVPNDVLLDNDRQ----QIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARVGL 657
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 658 VDKIFTRVGASDNISVGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 717
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R R LFATHYH L E + H K+ + + + + +++F
Sbjct: 718 AIVEYLHEQPRAKARTLFATHYHELN-EMEKNFH--------GIKNYNVSVKEVNGKIIF 768
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 769 LRKLEKGGSEHSFGIHVADIAGMPRSIVKRAN 800
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 167/385 (43%), Gaps = 59/385 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL----SGVGKCRQVGISE 330
KQ++++K+++ D LL F+ G FYE Y DA K L +T G+ G
Sbjct: 3 KQFFSMKAKHPDALLLFRCGDFYETYHDDAIDAAKVLGITLTKRNNGGNSGEIAMAGFPH 62
Query: 331 SGIDDAVEKLVARGYKVGRIEQLE----TSEQAKARH----TNSVISRKLVNVVTPSTTV 382
+D + KL+ G +V +QLE E+ K + + ++ R + +VTP +
Sbjct: 63 HALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSPMDKMVKRGITELVTPGVAM 122
Query: 383 DGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
+ L KE N G G +F+D + G D +G+
Sbjct: 123 GDNV-------LNYKENNFLAAVHFGKQACGVSFLDISTGEFLTGEGTYDYVEKLIGSF- 174
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
SPKE++Y +R KE + F E+ + F + + +KL++ +F
Sbjct: 175 ---SPKEILY-DRAYKKEFET---HFGTKLCTFEMDDWV----FTEQTANQKLLK---HF 220
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ 560
G+++ ++++ H+ G A G ++ +L L +R+ L +RMD
Sbjct: 221 -GTANLKGFGVDHL--HN-GIIAAGAIMQYLE-LTQHTQIRHITALTRIEEEKYVRMDRF 275
Query: 561 TL------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
T+ +D+ +T G R+LR W+ PLK V+ I RLDVVEY K
Sbjct: 276 TIRSLELVSTMNDEGTSLLNVIDNTITPMGGRMLRRWMVFPLKTVKPIEERLDVVEYFFK 335
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + + ++ DLER++ +V
Sbjct: 336 HQDFRDTINEQFHRIGDLERIISKV 360
>gi|381210064|ref|ZP_09917135.1| DNA mismatch repair protein MutS [Lentibacillus sp. Grbi]
Length = 856
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 176/317 (55%), Gaps = 41/317 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF+E Q E I +S IDVL+ FA +
Sbjct: 496 PELKEKEQLILEAEEQSVDLEYNLFLEIRDQVREHIPEIQYLAEVVSQIDVLQGFATVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDS 820
+ Q K P ++ L IK HP + +N VPNDILL +++
Sbjct: 556 AN-----------QYKRPEFSKNR----LAIKNGRHPVVEQVMKNDAF-VPNDILLDQET 599
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
LL+TGPNM GKST +R L VI+ Q+GCFVPCE L L D IFTR+GA D
Sbjct: 600 S-----ILLITGPNMSGKSTYMRQLALTVIMGQIGCFVPCEEAELLLFDQIFTRIGAADD 654
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940
+++G+STF+VE E + AT++SL++LDE+GRGTST+DG A+A A+ + +I+ +
Sbjct: 655 LVSGQSTFMVEMLEANHAIANATENSLILLDEIGRGTSTYDGMALAQALVEHIHNQIHAK 714
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
+F+THYH LT S + H+ +E Y +VFL+++ GA +SYG+
Sbjct: 715 TVFSTHYHELTALEDSLDRLKNIHV------RAEEYEGN---VVFLHQVKDGAADQSYGI 765
Query: 1001 QVAVMAGVPQKVVEAAS 1017
VA +A +P ++E A+
Sbjct: 766 HVAKLAELPSPLIERAN 782
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K + +QY +K+++ D LFF++G FYE++ DA + +EL+ +T GK
Sbjct: 1 MAKYTPMMEQYLKIKAEHKDAFLFFRLGDFYEMFFDDATLAARELEITLTKRDGGKEEPT 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + ++ L+ +GYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAANYIKNLIDKGYKVAICEQVEDPKIAKG-----VVKREVVQLITPGTVME 115
Query: 384 GTI 386
+
Sbjct: 116 SNM 118
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT+ G R+L+ W+ PL + + I R D VE ++ + + L+ + DLERL
Sbjct: 283 LDQTVTAMGSRMLKKWLDRPLLNHQEIEGRFDTVEGFLQGFMERDTLRETLKSVYDLERL 342
Query: 624 LGRVK-ARVQASSCIVL 639
GRV V A I L
Sbjct: 343 AGRVAYGNVNARDLIQL 359
>gi|342874150|gb|EGU76220.1| hypothetical protein FOXB_13292 [Fusarium oxysporum Fo5176]
Length = 927
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 164/298 (55%), Gaps = 13/298 (4%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ ++ AS + V+ ++ VL V S+S ++H P P +
Sbjct: 564 TQSSLVHEVVQVASSYCPVLERLA--GVLAHLDVIVSLSHASVHAP---ESYVRPKIHAR 618
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + ++ HP ++ + NDI L D L ++TGPNMGGKST +R T
Sbjct: 619 GEGQTI-LREARHPCMELQDDVQFITNDIELTRDKSSFL----IITGPNMGGKSTYIRQT 673
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 674 GVIALMAQVGCFVPCAEAELTIYDSILARVGASDSQLKGVSTFMAEMLETANILKSATAE 733
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT +P V H+
Sbjct: 734 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTALADQYPQVQNLHV 793
Query: 966 ACAFKSNS---ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
S + + +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 794 TAHIGGTSAAATSEADAKREVTLLYKVAPGVCDQSFGIHVAELVRFPDKVVRMAKRKA 851
Score = 42.4 bits (98), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL I R +VE ++E+ + ++LR +PDL R
Sbjct: 319 LNHCKTPVGSRLLAQWLKQPLMSKTEIEKRQQLVEAFYVDTELRQTLQEEHLRSIPDLYR 378
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGHIIPS 680
L R + GK L+ V+ + +++ G + +M E + P
Sbjct: 379 LSKRFQR-------------GKANLEDVVRAYQVVIRLPGFIGTFEGVM---DENYKDP- 421
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
L + + D SD L K E +D D D +
Sbjct: 422 LDEAYTIKLRDLSDSLGKLQDMVEQTVDLDALDRHEY 458
>gi|340966637|gb|EGS22144.1| DNA mismatch repair protein msh2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 940
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 171/306 (55%), Gaps = 36/306 (11%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA A + + RP I P+ + + ++ P L++ ++
Sbjct: 590 LAHLDVIVSFAHCAVHAPTSYVRPKIHPRGEGQTILKEARHPCLEV----------QDDV 639
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+G FVPC L++
Sbjct: 640 QFITNDVELTRDKSSFL----IITGPNMGGKSTYIRQIGVIALMAQVGSFVPCSYAELTI 695
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT++SL+I+DELGRGTST+DG+ +A+
Sbjct: 696 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATRESLIIIDELGRGTSTYDGFGLAW 755
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHP-----HVTLQHMACAFKSNSENYSKGD-- 980
A+ +V+ I C LFATH+H LT HP HVT H++ +N K D
Sbjct: 756 AISEHIVQEIGCFALFATHFHELTALADQHPQVRNLHVT-AHISGTSTANGSGPRKADTK 814
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEF 1040
+E+ LY++ G C +S+G+ VA + P KVV A + +++ +F
Sbjct: 815 REVTLLYKVEPGVCDQSFGIHVAELVRFPDKVVRMAK--------------RKADELEDF 860
Query: 1041 SSLHEE 1046
++ HEE
Sbjct: 861 TTNHEE 866
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL D + I R +VE ++E+ + ++LR +PDL R
Sbjct: 320 LNHCKTPLGSRLLAQWLKQPLMDKDEIEKRQQLVEAFANDTELRQTMQEEHLRAVPDLYR 379
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R + + K L+ V+V+ +++ L + L + E + P L
Sbjct: 380 LAMRFQRK-------------KANLEDVVRVYQVVIR-LPSLLGTLEGVMDEAYRDP-LD 424
Query: 683 RIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+ + + SD L KF E +D D D NH+
Sbjct: 425 EAYTNKLRELSDSLAKFQDMVETTVDLDALD--NHE 458
>gi|171679627|ref|XP_001904760.1| hypothetical protein [Podospora anserina S mat+]
gi|170939439|emb|CAP64667.1| unnamed protein product [Podospora anserina S mat+]
Length = 925
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 156/273 (57%), Gaps = 18/273 (6%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ S A A + + RP I P+ + + + G HP ++
Sbjct: 595 LAHLDVIVSLAHCAENAPVSYARPKIHPRGQGQTI----------LTGARHPCMEMQDDV 644
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L DS L ++TGPNMGGKST +R + ++AQ+G FVPCE L++
Sbjct: 645 TFITNDVSLTRDSSSFL----IITGPNMGGKSTYIRQIGVIALMAQIGSFVPCESAELTI 700
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 701 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 760
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ ++++I C LFATH+H LT +P V H+ S+ + +E+ LY
Sbjct: 761 AISEHIIQQIGCFALFATHFHELTALAEKYPQVQNLHVTAHITSDRDV----KREVTLLY 816
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+L G C +S+G+ VA + P KVV A A
Sbjct: 817 KLAPGICDQSFGIHVAELVRFPDKVVRMAKRKA 849
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 36/188 (19%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL D I R +VE + ++E+ + ++LR +PDL R
Sbjct: 325 LNHCKTPVGSRLLSQWLKQPLMDKAEIEKRQQLVEVFVNDTELRQTMQEEHLRSIPDLYR 384
Query: 623 LLGRVKAR-------VQASSCIVL------------------PLIGKKVLKQQVKVFGSL 657
L R + + V+A ++L PL + + ++ SL
Sbjct: 385 LSKRFQRKKATLEDVVRAYQVVILLPGFLCTLEGVMDEAARDPL-DEAYTNKLRELSNSL 443
Query: 658 VKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNH 717
VK + + L E H I KP DG + K L + + +D +F + N
Sbjct: 444 VKLQEMVETTVDLDALENHEF-----IIKPDFDDGLRIIRKRLDKLRSDMDKEFSEAAN- 497
Query: 718 DVTDLDAE 725
DLD E
Sbjct: 498 ---DLDQE 502
>gi|114566506|ref|YP_753660.1| DNA mismatch repair protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318429|sp|Q0AYB5.1|MUTS_SYNWW RecName: Full=DNA mismatch repair protein MutS
gi|114337441|gb|ABI68289.1| DNA mismatch repair protein MutS [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 859
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 164/287 (57%), Gaps = 32/287 (11%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF-- 800
E HAI+ +DVL+ A A ++ RP I DN G + +I+ HP
Sbjct: 550 ETAHAIAILDVLQGLAEVAYQNN--YIRPEI-----------DNSGKI-RIRAGRHPVVE 595
Query: 801 -ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
AL E VPND+ L D R ++TGPNMGGKST +R L V++AQ+G F+P
Sbjct: 596 KALRE--ARFVPNDLQLDRDK----ARFAIITGPNMGGKSTFMRQAALLVLMAQMGSFIP 649
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E + L D IFTR+GA+D + G+STF+VE E A++L A+ +SLVILDE+GRGTST
Sbjct: 650 AEEARIGLVDKIFTRVGASDDLAAGQSTFMVEMIEVANILNNASDNSLVILDEIGRGTST 709
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
+DG +IA AV L+E ++LFATHYH LT+ P + +++ + K
Sbjct: 710 YDGLSIAQAVSEYLLENSRSKVLFATHYHQLTRLAEKLPGII--NLSVSVKETGNT---- 763
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+VFL ++ G +SYGL VA +AG+P+K++ A ++K+
Sbjct: 764 ---VVFLKKVLPGKADKSYGLHVARLAGLPEKLIIRAEDILQGLEKN 807
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 171/398 (42%), Gaps = 81/398 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL--SGVG-KCRQVGISES 331
+QY +K + D +LFF++G FYE++ DA I +EL+ +T G G K G+
Sbjct: 9 QQYLQIKEEQQDAILFFRLGDFYEMFFEDARIASRELEIVLTARDGGAGSKIPMCGVPYH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D+ + +L+ RGYKV EQ+E +AK ++ R++ +VTP T ++ + A
Sbjct: 69 SVDNYLARLINRGYKVAICEQVEDPREAKG-----IVKREVTRIVTPGTIIEEQLLDQAK 123
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ L A++E + G A++D + W+ I + + + + + ++++SP E +
Sbjct: 124 NNFLAAVEE-------EPLCTGIAYIDISTGEFWLSEIAGENARSRVESEILRISPAECL 176
Query: 450 YENRG----------------------------------LCKEAQKA-LRKFSAGSAALE 474
G L ++ Q A L F S +
Sbjct: 177 LAGSGSLTGSWEEEWLRQQNITLTVWDELPLSLERAESLLLRQLQVASLESFGLKSYSAG 236
Query: 475 LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRL 534
+ A + FL+ ++ L + SS +N ++ D +S L
Sbjct: 237 IKAAARIIAFLEETQKTSLQHIKSLRCYSS-------DNFLEMDF-YSR--------RNL 280
Query: 535 MLDDVLRNGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
L LR G + +G L LD T+ GKRLLR WI PL++ I R
Sbjct: 281 ELTATLREG------------KREGSLLSILDESRTAMGKRLLRRWIEQPLREAGEIEER 328
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
LD V+ L + + L ++ DLERL G++ A V
Sbjct: 329 LDAVDELKNTLSLRTELTPLLSRINDLERLGGKIGASV 366
>gi|195397830|ref|XP_002057531.1| GJ18185 [Drosophila virilis]
gi|194141185|gb|EDW57604.1| GJ18185 [Drosophila virilis]
Length = 918
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 248/478 (51%), Gaps = 51/478 (10%)
Query: 548 YKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLK----DVEGINNRLD-VVEYLMK 602
+++Y+ LR L S S+ ++S +C P K D+ G+ ++ VV++
Sbjct: 408 FRIYQVILRTPKILQLLLSLEHST----VQSVLCAPFKSFLEDLTGLKQMVEQVVDFESI 463
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV---KARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+V + + +L +L++ + + R+Q C L L GK V + V G ++
Sbjct: 464 EKGEYLVKSTFDNRLMELQQTMTELYNKMERLQNKCCEELDLDGKMVKLENVAKLGYHLR 523
Query: 660 GLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDV 719
I D ++ +K I+ + K + SD L+ + +F A+ + + + Q V
Sbjct: 524 T-TIKDDSVLRKNKNYRIVD----VIKGGVRFTSDKLESYADEF-ASCRTRYEEQQQSIV 577
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
++ I++ + A+ + + + ++ +D L SFA+ A + RP +L +
Sbjct: 578 EEI--------IQVAVGYAAPLTSLNNELAQLDCLVSFAIAARCAPTPYVRPKMLAE--- 626
Query: 780 PAVRQDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
G L ++ + HP L E+ + N + + D C ++TGPNMGGK
Sbjct: 627 -------GAGKLLLEDVRHPCLELQEHVSF-IANSVAF--EKDKC--NMFIITGPNMGGK 674
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R+ AV++A +G FVPC M +S+ D+I R+GA+D I+ G STF+VE ET+ +
Sbjct: 675 STYIRSVGTAVLMAHVGAFVPCSMATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGI 734
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++ AT+ SLVI+DELGRGTST++G IA+++ L ++ C LFATH+H +TK + P
Sbjct: 735 IRTATEKSLVIIDELGRGTSTYEGCGIAWSIAEHLAKQTKCFTLFATHFHEITKLAETLP 794
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
V HMA ++ +N++ LY++ G +S+G+QVA +A P+ VV+ A
Sbjct: 795 TVKNVHMAAV--ADEDNFT-------LLYQVRPGVMEKSFGIQVARLANFPEHVVQNA 843
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPD--- 619
LD C T G RL+ W+ PL+ E +N+R ++V+ L+++ E + ++ YL+++PD
Sbjct: 333 LDHCRTPQGHRLMAQWVKQPLRSSEILNDRHNIVQCLLESPETLDTLSMDYLKRIPDILM 392
Query: 620 LERLLGRVKARVQ 632
L + L R KA +Q
Sbjct: 393 LTKKLMRRKASLQ 405
>gi|402302217|ref|ZP_10821337.1| DNA mismatch repair protein MutS [Selenomonas sp. FOBRC9]
gi|400381204|gb|EJP34008.1| DNA mismatch repair protein MutS [Selenomonas sp. FOBRC9]
Length = 869
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 164/281 (58%), Gaps = 26/281 (9%)
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKG 795
E+ V I+ +DVL+S A A+ S RP+I P S + +D P+++
Sbjct: 536 ERLVPIQNVARMIARVDVLQSMAEAAA--SYRYVRPVIRPASDGEIIIKDGRHPLVE--- 590
Query: 796 LWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
L E L VPND L + T+L+TGPNM GKST +R L ++AQ+G
Sbjct: 591 -----RLLERD-LFVPNDTHLSHGGTE----TMLITGPNMAGKSTYMRQVALLTLMAQVG 640
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP ++ D IFTR+GA+D +++G+STF+VE E A +L++AT+DSLVILDE+GR
Sbjct: 641 SFVPARSAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIGR 700
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTSTFDG +IA AV + RI+ + LFATHYH LT E A+ +++ A +
Sbjct: 701 GTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELT-EMANE---RIRNYCIAVREKGRG 756
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+VFL R+ +GA +SYG+ VA +AG+P KV E A
Sbjct: 757 -------VVFLRRIVAGAADKSYGIHVARLAGLPPKVTERA 790
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 174/392 (44%), Gaps = 51/392 (13%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSG-VGKCRQ 325
+ ++ +QY + K + LLFF++G FYE++ DA+I KEL +T SG + K
Sbjct: 4 QNITPMMQQYLSAKKAHPGELLFFRLGDFYEMFFDDAKIAAKELGLTLTSRSGDLDKNPM 63
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ D + +LVA+G+KV EQ+ + + R++V VVTP T + G
Sbjct: 64 CGVPYHAADSYIARLVAKGFKVAIAEQIGDPK------AKGLTPREVVKVVTPGTALLGE 117
Query: 386 IGPDA--VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
DA V+++ I E G Y A D + + DA+ + L +
Sbjct: 118 ELKDAANVYIVLIHETAPG------CYALAGADISTGECFYAAYTGDAAVQQIQDELYRR 171
Query: 444 SPKEVIY-ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ E+++ E + + +R F A++ P A+T ++ + L + +F
Sbjct: 172 TAAELLFTEPLSVADD----VRTF-----AVQRLPHCAITVVAPDADDELLAR---HFPP 219
Query: 503 SSSPWSKALENVMQHDIGF--SALGGLISHLSRLMLDD----------VLRNGDILPYKV 550
P + + + + + +S ++RL D LRN +I
Sbjct: 220 EEIPADAGARTAIAALLRYLHATVMADLSQINRLSFLDAAAGMQLDTYTLRNLEIT---- 275
Query: 551 YRDCLRMDGQ--TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
LR G+ TL+ LD T G RLL+SW+ HPL I+ RLD V L+ S +
Sbjct: 276 --RSLRDGGKKHTLFDVLDFTRTPMGTRLLKSWLEHPLLAPHRIDARLDAVAELVSASSL 333
Query: 607 VMVVAQYLRKLPDLERLLGRVKARVQASSCIV 638
+ + LR + D ERLL R++ + + +V
Sbjct: 334 RAKLRELLRSIYDFERLLTRIETQAANARDLV 365
>gi|256271408|gb|EEU06469.1| Msh2p [Saccharomyces cerevisiae JAY291]
Length = 964
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQIGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P++ H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNIKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLLQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ EV M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIEVRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|103488268|ref|YP_617829.1| DNA mismatch repair protein MutS [Sphingopyxis alaskensis RB2256]
gi|98978345|gb|ABF54496.1| DNA mismatch repair protein MutS [Sphingopyxis alaskensis RB2256]
Length = 864
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 155/273 (56%), Gaps = 26/273 (9%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALG 803
A SC DVL V A+++ AM P + P L++ G HP AL
Sbjct: 543 AASC-DVLARLDVAAALADHAMSHNWCRPDLADV--------PCLEVVGGRHPVVEAALA 593
Query: 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC 863
+ G VPND+ L E R L+TGPNMGGKST LR + ++LAQ G FVP
Sbjct: 594 KAGERFVPNDVSLSETD-----RLWLVTGPNMGGKSTFLRQNAVIIVLAQAGGFVPAASA 648
Query: 864 VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGY 923
L L D +F+R+GA+D + G STF+VE ETA++L +AT DS VILDE+GRGTST+DG
Sbjct: 649 RLGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQATPDSFVILDEVGRGTSTYDGL 708
Query: 924 AIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL 983
A+A++V + E CR LFATHYH LT+ + ++L H+ +GD L
Sbjct: 709 ALAWSVVEAVHEVNKCRCLFATHYHELTRLAETLDALSLHHVRA-------REWQGD--L 759
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
V L+ + +G SYGL VA +AGVP VV+ A
Sbjct: 760 VLLHEVAAGPADRSYGLAVARLAGVPPAVVKRA 792
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 172/377 (45%), Gaps = 48/377 (12%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QYW +K + D LLF+++G F+EL+ DA+ LD +T G + V G+
Sbjct: 3 QYWALKEKAGDCLLFYRMGDFFELFFDDAKAAAATLDIALTSRGEHDGQPVPMCGVPVHA 62
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKAR-HTNSVISRKLVNVVTPSTTVDGTI--GPD 389
+ + +L+ G++V EQ+ET +AKAR + ++++R +V VT T + ++ G
Sbjct: 63 AESYLARLIRAGHRVAIAEQVETPAEAKARGGSKALVARDIVRFVTAGTLTEESLLEGRS 122
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
A L A+ E G A D + R V T+ D A+ A L +++P E++
Sbjct: 123 ANRLAALAE-----VGGEREVAIAAADISTGRFEVVTVRPD----AVDAELARLAPSELL 173
Query: 450 YENRG---LCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL------VQLNGY- 499
A++ +R+ PA +DF + K+L L+G+
Sbjct: 174 LSESAEDLPISSARQVVRR-----------PA---SDFASTAAQKRLEAFFGVRTLDGFG 219
Query: 500 -FNGSSSPWSKALENVMQH--DIGFSALGGLISHLS--RLMLDDVLRNGDILPYKVYRDC 554
F+ S AL + H G + L + HL+ R+ +D R L V
Sbjct: 220 QFSRSEIAAMGALLAYLDHVGTGGPTFLQPPVRHLASDRMAIDAATRESLEL---VRTMA 276
Query: 555 LRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+G L +D VT++G RLL + PL D I +RLD+V+ L +++ +
Sbjct: 277 GTREGSLLGTIDRTVTAAGARLLADDLASPLTDRAAILDRLDLVDALAQDALWRGDLRAA 336
Query: 614 LRKLPDLERLLGRVKAR 630
LR LPD R LGR+ AR
Sbjct: 337 LRALPDAGRALGRLVAR 353
>gi|320529998|ref|ZP_08031074.1| DNA mismatch repair protein MutS [Selenomonas artemidis F0399]
gi|320137795|gb|EFW29701.1| DNA mismatch repair protein MutS [Selenomonas artemidis F0399]
Length = 861
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 165/281 (58%), Gaps = 26/281 (9%)
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKG 795
E+ V I+ +DVL+S A A+ S RP+I P S + +D P+++
Sbjct: 528 ERLVPIQNVARMIARVDVLQSMAEAAA--SYRYVRPVIRPASDGEIIIKDGRHPLVE--- 582
Query: 796 LWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
L E L VPND L + T+L+TGPNM GKST +R L ++AQ+G
Sbjct: 583 -----RLLERD-LFVPNDTHLSHGGTE----TMLITGPNMAGKSTYMRQVALLTLMAQVG 632
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP ++ D IFTR+GA+D +++G+STF+VE E A +L++AT+DSLVILDE+GR
Sbjct: 633 SFVPARSAQIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIGR 692
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTSTFDG +IA AV + RI+ + LFATHYH LT E A +++ A + +
Sbjct: 693 GTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELT-EMAGE---RIRNYCIAVREKGRS 748
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+VFL R+ +GA +SYG+ VA +AG+P KV+E A
Sbjct: 749 -------VVFLRRIVAGAADKSYGIHVARLAGLPPKVMERA 782
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 157/388 (40%), Gaps = 77/388 (19%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSG-VGKCRQVGISESG 332
+QY + K + LLFF++G FYE++ DA+I KEL +T SG + K G+
Sbjct: 3 QQYLSAKKAHPGELLFFRLGDFYEMFFDDAKIAAKELGLTLTSRSGDLDKNPMCGVPYHA 62
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDA-- 390
D + +LVA+G+KV EQ+ + + R++V VVTP T + G DA
Sbjct: 63 ADSYIARLVAKGFKVAIAEQIGDPK------AKGLTPREVVKVVTPGTALLGEELKDAAN 116
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAAL--------GALLMQ 442
V+++ I E G Y A D + + DA+ + A L+
Sbjct: 117 VYIVLIHETAPG------CYALAGADISTGECFYAAYTGDAAVQQIQDELYRRTAAGLLF 170
Query: 443 VSPKEVIYENRGLCKE----------AQKALRKFSAGSAALELTPA--------MAVTDF 484
P V + R + A A + A E PA A+ +
Sbjct: 171 TEPLSVADDVRAFAVQRLPHCAITVVAPDADDELIARHFPPEEIPADAGARTAIAALLRY 230
Query: 485 LDASEVKKLVQLN--GYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRN 542
L A+ + L Q+N + + S+ MQ D L L + LR+
Sbjct: 231 LHATVMADLSQINCLSFLDASAG---------MQLD---------TYTLRNLEITRSLRD 272
Query: 543 GDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
G TL+ LD T G RLL+SW+ HPL I+ RLD V L
Sbjct: 273 GG-------------KKHTLFDVLDFTRTPMGTRLLKSWLEHPLLVPHRIDARLDAVAEL 319
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRVK 628
+ S + + LR + D ERLL R++
Sbjct: 320 VSASSLRGKLRDLLRSIYDFERLLTRIE 347
>gi|340520005|gb|EGR50242.1| DNA mismatch repair protein [Trichoderma reesei QM6a]
Length = 1095
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 170/345 (49%), Gaps = 49/345 (14%)
Query: 680 SLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKAS 739
+LSR P + D+ AA D F D+ AS
Sbjct: 750 ALSRFHTPEVIRLITERDQHREALAAACDKAFKDF-------------------LASIAS 790
Query: 740 QWS---EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
++ + I A++ +D L S + A+ +P LP + P++ G
Sbjct: 791 EYQPLRDAISALATLDCLLSLSKVAAQP--GYTKPTFLPATSEPSISISQG--------- 839
Query: 797 WHPFA--LGENGGLPVPNDILLGEDSDDCLPRTL--LLTGPNMGGKSTLLRATCLAVILA 852
HP A + E+ +P + P L L+TGPNMGGKS+ +RA L V+L+
Sbjct: 840 RHPMAEHMLESSYIPFSTTL--------SHPSALAHLITGPNMGGKSSFVRAVALIVLLS 891
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+G FVP + L+ D I TR GA D + GESTF+VE TETA +L+ AT SLVILDE
Sbjct: 892 QIGSFVPADALELTFCDAIHTRAGARDNLFAGESTFMVEVTETARILRSATPRSLVILDE 951
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
LGRGTST DG AIA AV +V C LF THY L P VT HM K N
Sbjct: 952 LGRGTSTHDGAAIAQAVLHHVVTETRCLTLFITHYQNLAHIADGLPGVTNVHM----KFN 1007
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+E G++E+ FLY + G SYGL VA +A +P+KV++ A+
Sbjct: 1008 AEKGPDGEEEITFLYEVGEGIAHRSYGLNVARLARIPKKVLDVAA 1052
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 164/410 (40%), Gaps = 61/410 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLSGVGKCR 324
Q+ ++K ++MD +L +VG + + DA I KEL D + + + +
Sbjct: 199 QFLDIKRKHMDTILIVEVGYKFRFFGEDARIAAKELGIVCIPGKMRYDEHPSEAHLDRFA 258
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVTPSTTVD 383
I + ++LVA G+KVG + Q+ET+ KA + N+ RKL N+ T T VD
Sbjct: 259 SASIPVHRLPVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNAPFVRKLTNLYTKGTYVD 318
Query: 384 --GTI------GPDAVHLLAIKE---GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDAS 432
G + P +LL I E G D +V G V A + D
Sbjct: 319 ENGELDSQDASAPSGGYLLCITETASKGAGTDE-NVNVGILAVQPATGDIIYDNFEDCFM 377
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-------AALELTPAMAVTDFL 485
+ + L+ +SP E + + K K ++ S S A +E P
Sbjct: 378 RSEIETRLLHISPCEFLIVG-DITKGTDKLIQHLSGSSTNVFGDRARVERVPKSKTMAAE 436
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS-ALGGLISHLSRLMLDDV----- 539
S V + + S L+ V++ + L +I+HL L+ +
Sbjct: 437 AYSHVTQFYADQVKEASDNETASALLDKVLRLPEAITICLSAMITHLQEYGLEHIFGLTK 496
Query: 540 -----------LRNGDIL-PYKVYRDCL--RMDGQTLY-LDSCVTSSGKRLLRSWICHPL 584
L NG L +VYR+ G + +D +T G+RLLR W+ PL
Sbjct: 497 YFQSFSTRSHMLINGTTLESLEVYRNSTDHSQKGSLFWAVDKTLTRFGQRLLRKWVGRPL 556
Query: 585 KDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
D E ++ RL V+ L+ Q + DLERLL KA ++ S
Sbjct: 557 LDRERLDERLAAVQELLDK--------QSTPPVDDLERLLTTTKADLERS 598
>gi|302344788|ref|YP_003813141.1| DNA mismatch repair protein MutS [Prevotella melaninogenica ATCC
25845]
gi|302149251|gb|ADK95513.1| DNA mismatch repair protein MutS [Prevotella melaninogenica ATCC
25845]
Length = 886
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 179/332 (53%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D + L++ +L++E E I + I+ +D
Sbjct: 510 LAQAERYITPELKEYE-EKILGADEKILALETQLYMELIQDMQEFIPQIQINANLIAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF + + RP++ + V+ IK HP +GE
Sbjct: 569 CLLSFMKVSQLQRYV--RPVV------------DDSEVIDIKQGRHPVIETQLPIGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL D + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + +
Sbjct: 613 -YVPNDVLL----DTEHQQIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARIGM 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R R LFATHYH L + + P + K+ + + + D +++F
Sbjct: 728 AIVEYLHEHSRAQARTLFATHYHELNEMEKNFPRI---------KNFNVSVKQVDGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 779 VRKLEKGGSEHSFGIHVAEIAGMPRSIVKRAN 810
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 167/387 (43%), Gaps = 49/387 (12%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG----KC 323
K ++ KQ++++K+Q+ L+ F+ G FYE Y DA + L +T G
Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESARILGITLTRRNNGGNGDSI 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA--------RHTNSVISRKLVNV 375
G +D + KL+ G +V +QLE ++ + + ++ R + +
Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREAIKGKKGLSAMDKMVKRGITEL 125
Query: 376 VTPSTTV-DGTIGPDAVHLLA---IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDA 431
VTP + D + + LA +G+CG +F+D + G +
Sbjct: 126 VTPGVAMSDNVLNYKENNFLAAVHFGKGSCG---------VSFLDISTGEFLTG----EG 172
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
+ + LL PKEV+++ + Q R F E+ + F D + +
Sbjct: 173 TFDYVEKLLGNFQPKEVLFDR----AKKQDFERYFGTRLCTFEMDDWV----FTDQTARQ 224
Query: 492 KLVQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGD 544
KL++ L G+ + A ++Q+ +I I+ L+R+ D +R D
Sbjct: 225 KLLKHFGTKNLKGFGVDHLNNGVVAAGAILQYLEITQHTQINHITSLARIEEDKYVRM-D 283
Query: 545 ILPYKVYRDCLRM--DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ M DG +L +D+ +T G R+LR W+ PLKD + IN RLDVV+YL
Sbjct: 284 RFTIRSLELIAPMNEDGSSLLNVIDNTITPMGGRMLRRWMVFPLKDEKPINERLDVVDYL 343
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + + ++ DLER++ +V
Sbjct: 344 FREPDFRECINEQFHRIGDLERIISKV 370
>gi|226951439|ref|ZP_03821903.1| methyl-directed mismatch repair protein, recognizes exocyclic adducts
of guanosine [Acinetobacter sp. ATCC 27244]
gi|226837806|gb|EEH70189.1| methyl-directed mismatch repair protein, recognizes exocyclic adducts
of guanosine [Acinetobacter sp. ATCC 27244]
Length = 879
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 174/321 (54%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ + +Q + AI+ IDVL +FA A +++ A RP P++
Sbjct: 544 LLDELRQNIAQLQMMSAAIAYIDVLANFAHQARLNNWA--RPEFTPET------------ 589
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI HP N PND L D R ++TGPNMGGKST +R T L
Sbjct: 590 CIKIHAGRHPVVEALNKAPFTPNDTFL-----DPQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP + L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E +S
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVLDLTKRVKCLCLFATHYFELT-ELSS------------- 750
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ +NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 751 ETGIDNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLKILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ F+++ Q FSS+ E
Sbjct: 811 QQHQHFQNTVQNDLFSSIEHE 831
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 165/383 (43%), Gaps = 66/383 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK +Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKMEYSHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGQPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGTIGP-DAV 391
+ E +AR K GR + EQ + RK+V V+TP T T D +G +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRVLTPGTLTDDALLGSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N G A +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIQQNQ---IGIALLDLSASIFKVQ--QQDYKPEQLAIELARLMPSEILID 184
Query: 452 NRGLCKEAQKALRK-------------FSAGSAALELTPAMAVTDF---------LDASE 489
+ + + ++K F+ +A L AV+ L +
Sbjct: 185 EDLIDQNIIEHIKKNLDCSVTKRPNVDFNLNNAQKTLCDQFAVSTLSGFGLDSLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P ++++ ++ F AL + RN +I+
Sbjct: 245 AAALIHYAKETQKTALPHIRSIQ--IEQSTDFIALDPITR-----------RNLEII--- 288
Query: 550 VYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NS 604
+ L G +L+ ++ C T+ G RLL + P++D ++ RLD E L+K S
Sbjct: 289 ---EPLFEHGTSLFQLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDATEQLLKGYHES 345
Query: 605 EVVMVVAQYLRKLPDLERLLGRV 627
V +V L+++ D+ER+L RV
Sbjct: 346 PVRLV----LKEIGDIERVLSRV 364
>gi|151945544|gb|EDN63785.1| MutS-like protein [Saccharomyces cerevisiae YJM789]
Length = 964
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQIGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P++ H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNIKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLLQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|365905365|ref|ZP_09443124.1| DNA mismatch repair protein MutS [Lactobacillus versmoldensis KCTC
3814]
Length = 875
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 161/291 (55%), Gaps = 33/291 (11%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGE 804
+S +DVL+SFA+ S H + P G LKI HP LG
Sbjct: 539 LSELDVLQSFAIV----SETYH--YVAPDFVE--------GHQLKIVNGRHPVVEKVLGN 584
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
N +PND+ ++D LL+TGPNM GKST +R L VI+AQ+GCFVP E
Sbjct: 585 NSY--IPNDVTFDSETD-----VLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAEAAT 637
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
L + D IFTR+GA D +++G+STF+VE E L+ AT++SLVI DELGRGT+T+DG A
Sbjct: 638 LPIFDHIFTRIGAADDLISGDSTFMVEMREANDALKNATKNSLVIFDELGRGTATYDGMA 697
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+A A+ + + ++ +F+THYH LT L+ K+ + S+ D LV
Sbjct: 698 LAQAIIEYIDKNVHAMTMFSTHYHELT---------VLESQLTGVKNVHVDASEEDGNLV 748
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 1035
FL+++ G +SYG+ VA +AG+P +V+ A ++ G K+SE
Sbjct: 749 FLHKVLPGPADKSYGIHVAKLAGLPDQVLTRADSILSKLESEGGAEIKASE 799
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 163/373 (43%), Gaps = 48/373 (12%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-----C 323
K + +QY K Q+ D LF++VG FYE++ DA G + L+ +TL+ K
Sbjct: 6 KETPMMEQYLEYKKQFPDAFLFYRVGDFYEMFYDDAIKGSQILE--LTLTSRNKKADDSI 63
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ ++ LV +GYKV +QLE A+ + ++ R + VVTP T +D
Sbjct: 64 PMCGVPHKAVESYIDTLVDKGYKVAVCDQLENPADAEGK----MVKRGITRVVTPGTIMD 119
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL--LM 441
+ + N G +G A+ D + V V +I++ LG + +
Sbjct: 120 NANQATENNYITAITNNKG------AFGLAYADLSTGEVKVTSIDN-----QLGLINEMQ 168
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFS---AGSAALELTPAMAVTDFLDASEVKKLVQLNG 498
++ KE + N K+ +RK + LE + + D S+V L L
Sbjct: 169 NLNTKETVVLNT-FPKKYLDPIRKLGILISRITDLEDNYSFDFSAVTDDSQVDTLKLLIS 227
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + ++L+++ ++ L+ H ++ L ++ +N +R D
Sbjct: 228 YLIKTQ---MRSLDHLKAAQTYETSAYLLMDHNAQSNL-ELFKN------------IRTD 271
Query: 559 ---GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
G L+ LD T+ G RLL+ W+ PL + +R +V+ + N YL
Sbjct: 272 KKSGTLLWLLDETKTAMGGRLLKQWLARPLIKANKLRDRQHIVQVFLDNYFQRASFQDYL 331
Query: 615 RKLPDLERLLGRV 627
K+ DLERL GRV
Sbjct: 332 TKVYDLERLAGRV 344
>gi|85709591|ref|ZP_01040656.1| DNA mismatch repair protein [Erythrobacter sp. NAP1]
gi|85688301|gb|EAQ28305.1| DNA mismatch repair protein [Erythrobacter sp. NAP1]
Length = 864
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 143/244 (58%), Gaps = 17/244 (6%)
Query: 790 VLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
L I+ HP AL + G V ND LG C R L+ GPNMGGKST LR
Sbjct: 578 ALDIEAGRHPVVEAALAKVGDRFVANDCNLG-----CDDRLWLIGGPNMGGKSTFLRQNA 632
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L V++AQ GCFVP + L D +F+R+GA+D + G STF+VE ETA++L +ATQ S
Sbjct: 633 LIVLMAQAGCFVPAASARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILSQATQRS 692
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
VILDE+GRGTST+DG A+A+AV + RI CR LFATHYH L++ S ++L H+
Sbjct: 693 FVILDEVGRGTSTYDGLALAWAVVEGVHSRIECRCLFATHYHELSRLAESCESLSLHHVR 752
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
KGD LV L+ L G SYGL VA +AGVP+ VV A +++S
Sbjct: 753 A-------REWKGD--LVLLHELAEGPADRSYGLAVAKLAGVPKDVVARAKAVLEKLERS 803
Query: 1027 IGES 1030
E+
Sbjct: 804 REET 807
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 169/395 (42%), Gaps = 84/395 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG------VGKCRQVGI 328
+QY +KS+ + LLF+++G F+EL+ DA++ LD +T G V C G+
Sbjct: 3 EQYLALKSEAGESLLFYRMGDFFELFFDDAKVAANILDIALTSRGEHDGEPVAMC---GV 59
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKAR-------HTNSVISRKLVNVVTPST- 380
+ + +L+ G +V EQ+ET ++AKAR + +++ R +V VT T
Sbjct: 60 PVHSAEGYLARLIKAGQRVAIAEQVETPDEAKARAKREGKPASKALVGRDIVRFVTAGTL 119
Query: 381 TVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIN-DDASCAALGAL 439
T + + P A +LL G + AA + GT+ ++ S A LGA
Sbjct: 120 TEEALLNPRAANLLVALADVRGT-----------IGLAACDISTGTMTLEECSPAMLGAE 168
Query: 440 LMQVSPKEVIYE---NRGLCKEAQKALRKFSA--GSAALELTPAMAVTDFLDASEVKKLV 494
L ++ EV+ G + + A FS+ GS AL+ +V +
Sbjct: 169 LARLGATEVVVPEGWEHGPEEASFHARSAFSSDGGSDALQ--------------KVHGVS 214
Query: 495 QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR--------------------L 534
L+G+ + +S+A+ +A GGLI +L +
Sbjct: 215 TLDGFGD-----FSRAM---------LAAAGGLIGYLDHVGRGTLPLLLPPVLRDNSAGM 260
Query: 535 MLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
++D+ R L ++ R LD C T +G RLL + PL D I +RL
Sbjct: 261 VMDEATRGS--LEILESQNGARTGSLVAALDRCSTGAGSRLLAQDLSAPLLDHAAIEDRL 318
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+V++ + + LR LPD+ R LGR+ A
Sbjct: 319 SLVQFWRERPIERANLRDVLRALPDIGRALGRLVA 353
>gi|335356946|ref|ZP_08548816.1| DNA mismatch repair protein MutS [Lactobacillus animalis KCTC 3501]
Length = 868
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/328 (35%), Positives = 176/328 (53%), Gaps = 48/328 (14%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGE 804
++ +DVL+SFA + RP +L Q++ L I WHP LG+
Sbjct: 541 VAQLDVLQSFATVSE--DNHFVRP-VLSQNER----------TLDIVEGWHPVVEKVLGK 587
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
+PND+ + + D LL+TGPNM GKST +R L+VI+AQ+GCFVP +
Sbjct: 588 QSY--IPNDVKMSSELD-----ILLITGPNMSGKSTYMRQLALSVIMAQMGCFVPAKQAK 640
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
+ + D IFTR+GA D +++GESTF+VE E L++AT +SL++ DELGRGT+T+DG A
Sbjct: 641 MPIFDQIFTRIGAADDLISGESTFMVEMKEANLALKQATPNSLLLFDELGRGTATYDGMA 700
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+A A+ + +++ + LF+THYH LT PH+ H+ K D ELV
Sbjct: 701 LAQAIIEYVHDKVKAKTLFSTHYHELTVLEQELPHLANIHVGAVEK---------DGELV 751
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
FL+++ +G SYG+ VA +AG+P ++ A +I + E ++L
Sbjct: 752 FLHKMQAGPADRSYGVHVAKLAGMPASLLTRAD--------TILHQLEGKEAPKMTTTLK 803
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFC 1072
E V+ V +DD +A +LF
Sbjct: 804 E--------VAPVQVEADDSEAQLSLFS 823
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 110/375 (29%), Positives = 176/375 (46%), Gaps = 41/375 (10%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGV 320
P+ KK + +QY VK QY D LF+++G FYE++ DA G + L+ +T + V
Sbjct: 2 PQKTKK-TPMMEQYLAVKKQYPDAFLFYRLGDFYEMFYDDAVKGAQILELTLTTRNKNAV 60
Query: 321 GKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
G+ + ++ LV +GYKV EQ+E + AK ++ R++V +VTP T
Sbjct: 61 DPIPMCGVPHHAAQNYIDILVDQGYKVAICEQVEDPKTAKG-----MVKREVVQLVTPGT 115
Query: 381 TVD--GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
+D + + +L A+ E + G YGFA+ D + + V T+ S +L
Sbjct: 116 IIDQNASEAKENNYLTALHE-----EKGQ--YGFAYADLSTGEIKVATLT---STESLLN 165
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVT----DFLDASEVKKL 493
LM + KEV+ ++ L + Q L + S E+TP+ V+ D E + +
Sbjct: 166 ELMSLQTKEVVIDD-SLSQPTQTLLEQLKVLTSTQPEVTPSAEVSYVSQDLQQTLEKQTV 224
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYR 552
QL Y + + L+ + ++ SH L LD + RN ++L K R
Sbjct: 225 KQLLAYLTTTQKRFLAHLQKAVHYEP---------SHY--LKLDHNAQRNLELL--KNLR 271
Query: 553 DCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
+ LD T+ G RLL+ WI PL D++ I R +VE L+ N + +
Sbjct: 272 THKKSGTLLWLLDETKTAMGARLLKQWIGRPLLDLKQIEQRQAIVEDLLDNYFERSGIIE 331
Query: 613 YLRKLPDLERLLGRV 627
L ++ DLERL GRV
Sbjct: 332 QLTQVYDLERLAGRV 346
>gi|403256359|ref|XP_003920848.1| PREDICTED: DNA mismatch repair protein Msh3 [Saimiri boliviensis
boliviensis]
Length = 1123
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 166/307 (54%), Gaps = 22/307 (7%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + + ++ ID + S A A G RP + Q +
Sbjct: 787 VLDCSAEWLDFL-EKFSEHYHSLCKAVDHLATIDCIFSLAKVAKQ--GDYCRPTV--QEE 841
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L EDS+ R +++TGPNMGGK
Sbjct: 842 RKILIKNGRHPVIDV-------LLGEQDQY-VPNSTDLSEDSE----RVMIITGPNMGGK 889
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 890 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 949
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 950 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1009
Query: 959 H-VTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H V HM + G+++ + FLY++T G SYGL VA +A VP +++
Sbjct: 1010 HQVGNYHMGFLVSEDESRLPPGEEQVPDFVTFLYQITRGIAERSYGLNVAKLADVPGEIL 1069
Query: 1014 EAASHAA 1020
+ A+H +
Sbjct: 1070 KKAAHKS 1076
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 122/448 (27%), Positives = 186/448 (41%), Gaps = 69/448 (15%)
Query: 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRT--LYIPPEALKKMSASQKQYWNVKSQYMD 286
DT S D N ++ D +KR+ +Y P E QY +K Q+ D
Sbjct: 182 DTLFDLSHFGSSNTSDENLQKTDSKPANKRSKSIYTPLEL---------QYIEMKQQHKD 232
Query: 287 VLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346
+L + G Y + DAEI +EL+ L I + V +LVA+GYK
Sbjct: 233 AVLCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYK 290
Query: 347 VGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV--------- 391
VG ++Q ET+ +A + +S+ SRKL + T ST + + P DAV
Sbjct: 291 VGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEVMTDT 350
Query: 392 ---HLLAIKEGNCG---PDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+LL I E N + G+V G V A V + D AS + L + + P
Sbjct: 351 STSYLLCISENNENVRDKNKGNVFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQP 410
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-AVTDFL--DASE 489
E++ + L K+ + + + ++ S E + A AVT+F D +
Sbjct: 411 VELLLPS-ALSKQTEMLIHRATSVSVRDDRIRVERMDNTYFEYSHAFQAVTEFYAKDTVD 469
Query: 490 VKKLVQLNGYFNGSSSPWSKA-----------LENVMQHDIGFSALGGLISHLSRLMLDD 538
K ++G N S LE ++ F L + ++ +
Sbjct: 470 FKGSKIISGIINLEKSVICSLAAIIKYLREFNLEKMLSKPENFKQLSSKMEFMT--INGT 527
Query: 539 VLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
LRN +IL + ++ G L+ LD TS G+R L+ W+ PL + IN RLD V
Sbjct: 528 TLRNLEILQNQT---DMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAV 584
Query: 598 -EYLMKNSEVVMVVAQYLRKLPDLERLL 624
E L S V + +L KLPD+ER L
Sbjct: 585 SEVLHSESSVFGQIENHLHKLPDIERGL 612
>gi|299144077|ref|ZP_07037157.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518562|gb|EFI42301.1| DNA mismatch repair protein MutS [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 868
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 189/350 (54%), Gaps = 40/350 (11%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L E L E Q +V IS +DVL S A ++ RP I
Sbjct: 528 LQMEIYKSLKEFLANNIIQIQKVAKNISKLDVLVSLCTVAIDNNYV--RPSI-------- 577
Query: 782 VRQDNGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
N +++IK HP L L VPND LL D+++ L ++TGPNM GKST
Sbjct: 578 ----NKNGIIEIKNGRHPIVELKLQEELFVPNDTLL--DTNNNLIH--IITGPNMAGKST 629
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R + VI+A +G +VPCE +SL D IFTR+GA+D + G+STF+VE E A++++
Sbjct: 630 YMRQVAIIVIMAHMGSYVPCESANISLVDKIFTRIGASDNLAKGDSTFMVEMKEVANIVK 689
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT++SL+ILDE+GRGTST+DG +IA+A+ LV I+ + LFATHYH L S+ +
Sbjct: 690 NATKNSLIILDEVGRGTSTYDGLSIAWALVEYLVTNIHAKTLFATHYHELVN--LSNKYN 747
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA---- 1016
+ ++ + + K + +VFL ++ G SYG+ VA +AG+ +++ +
Sbjct: 748 NINNLTISVE-------KQNDSIVFLRKIVEGFSNNSYGIDVAKLAGINDFIIQRSNEIL 800
Query: 1017 ----SHAALAMKKSIGESFK-SSEQRSEFSSLHEEWLKTIVNVSRVDCNS 1061
++ + +K +I + K Q++ F +E+LK + S ++ NS
Sbjct: 801 EFIQNNEDMNIKNNIAKKDKIKVSQKTIFDMKKDEFLKKL---STLNINS 847
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQV-GISESG 332
+QY +K ++ D +LFF++G FYE++ DA I KEL+ +T S G+ + G+
Sbjct: 3 EQYLEIKKKHKDEILFFRLGDFYEMFFEDAIIASKELEITLTKRSSTGENTPMCGVPYHV 62
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
D + KL+ +GYKV +Q+E + AK +++ R++ +VTP T D
Sbjct: 63 ADSYISKLINKGYKVAICDQMEDPKLAK-----TIVKREVTKIVTPGTFTD 108
>gi|288801817|ref|ZP_06407259.1| DNA mismatch repair protein MutS [Prevotella melaninogenica D18]
gi|288335859|gb|EFC74292.1| DNA mismatch repair protein MutS [Prevotella melaninogenica D18]
Length = 886
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 179/332 (53%), Gaps = 45/332 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D + L++ +L++E E I + I+ +D
Sbjct: 510 LAQAERYITPELKEYE-EKILGADEKILALETQLYMELIQDMQEFIPQIQINANLIAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SF + + RP++ + V+ IK HP +GE
Sbjct: 569 CLLSFMKVSQLQRYV--RPVV------------DDSEVIDIKQGRHPVIETQLPIGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+LL D + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + +
Sbjct: 613 -YVPNDVLL----DTEHQQIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAERARIGM 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTSRSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R R LFATHYH L + + P + K+ + + + D +++F
Sbjct: 728 AIVEYLHEHSRAQARTLFATHYHELNEMEKNFPRI---------KNFNVSVKEVDGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ +L G S+G+ VA +AG+P+ +V+ A+
Sbjct: 779 VRKLEKGGSEHSFGIHVAEIAGMPRSIVKRAN 810
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 168/387 (43%), Gaps = 49/387 (12%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG----KC 323
K ++ KQ++++K+Q+ L+ F+ G FYE Y DA + L +T G
Sbjct: 6 KGLTPMMKQFFSMKAQHPGALMLFRCGDFYETYGEDAVESARILGITLTRRNNGGNGDSI 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLE----TSEQAKARH----TNSVISRKLVNV 375
G +D + KL+ G +V +QLE E+ K + + ++ R + +
Sbjct: 66 EMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREEIKGKKCLSAMDKMVKRGITEL 125
Query: 376 VTPSTTV-DGTIGPDAVHLLA---IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDA 431
VTP + D + + LA +G+CG +F+D + G +
Sbjct: 126 VTPGVAMSDNVLNYKENNFLAAVHFGKGSCG---------VSFLDISTGEFLTG----EG 172
Query: 432 SCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
+ + LL PKEV+++ + Q R F E+ + F D + +
Sbjct: 173 TFDYVEKLLGNFQPKEVLFDR----AKKQDFERYFGTRLCTFEMDDWV----FTDQTARQ 224
Query: 492 KLVQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGD 544
KL++ L G+ + A ++Q+ +I I+ L+R+ D +R D
Sbjct: 225 KLLKHFGTKNLKGFGVDHLNNGVVAAGAILQYLEITQHTQINHITSLARIEEDKYVRM-D 283
Query: 545 ILPYKVYRDCLRM--DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ M DG +L +D+ +T G R+LR W+ PLKD + IN RLDVV+YL
Sbjct: 284 RFTIRSLELIAPMNEDGSSLLNVIDNTITPMGGRMLRRWMVFPLKDEKPINERLDVVDYL 343
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + + ++ DLER++ +V
Sbjct: 344 FREPDFRECINEQFHRIGDLERIISKV 370
>gi|300727541|ref|ZP_07060932.1| DNA mismatch repair protein MutS [Prevotella bryantii B14]
gi|299775244|gb|EFI71845.1| DNA mismatch repair protein MutS [Prevotella bryantii B14]
Length = 835
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 176/331 (53%), Gaps = 45/331 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D LS+ +LF E I + I+ +D
Sbjct: 458 LAQAERYITQELKEYE-EKILGADERILSLEAKLFSELIVDMQAFIPQIQINANLIAQLD 516
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
L SFA + ++ RP++ + ++ IK HP +GE
Sbjct: 517 CLLSFAAISELNHYV--RPVV------------DDSEIIDIKQGRHPVIETQLPIGEQ-- 560
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND+ L D + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + L
Sbjct: 561 -YVPNDVYLDNDKQ----QVMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAEGARIGL 615
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 616 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPRSLVLFDELGRGTSTYDGISIAW 675
Query: 928 AVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E N R LFATHYH L + ++ + K+ + + + D +++F
Sbjct: 676 AIVEYLHEHSSANARTLFATHYHELNE---------MEKLFSRIKNYNVSVKEVDGKVIF 726
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
L +L G S+G+ VA +AG+P+ +V+ A
Sbjct: 727 LRKLERGGSNHSFGIHVAEIAGMPKSIVKRA 757
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 41/328 (12%)
Query: 321 GKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA--------RHTNSVISRKL 372
G+ G +D + KL+ G +V +QLE ++ + + ++ R +
Sbjct: 11 GQMEMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREALKGKKGLTEMDKMVKRGI 70
Query: 373 VNVVTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDD 430
+VTP +D + L KE N G G +F+D + G D
Sbjct: 71 TELVTPGVALDDNV-------LNYKENNFLAAVHFGKNACGISFLDISTGEFLTGEGTYD 123
Query: 431 ASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
+G + PKE++Y+ + + R F EL + F + +
Sbjct: 124 YVEKLIGNFM----PKEILYDR----AKKEDFERFFGTKLVTFELDDWV----FTEQTAR 171
Query: 491 KKLVQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLR-- 541
+KL++ L G+ A +MQ+ +I I+ LSR+ + +R
Sbjct: 172 QKLLKHFGTKNLKGFGVEHLKNGVIASGAIMQYLEITQHTHINHITSLSRIEEEKYVRMD 231
Query: 542 NGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
N I ++ ++ +G +L +D +T G R+LR W+ PLK V+ I+ RL+VVEY
Sbjct: 232 NFTIRSLELV-SPMQEEGSSLLKVIDHTITPMGGRMLRRWVVFPLKSVKPIDERLNVVEY 290
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ E + L ++ DLER++ +V
Sbjct: 291 FFREPEFRECIDDQLHRIGDLERIISKV 318
>gi|42528103|ref|NP_973201.1| DNA mismatch repair protein MutS [Treponema denticola ATCC 35405]
gi|48428293|sp|P61672.1|MUTS_TREDE RecName: Full=DNA mismatch repair protein MutS
gi|41819148|gb|AAS13120.1| DNA mismatch repair protein MutS [Treponema denticola ATCC 35405]
Length = 891
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 121/279 (43%), Positives = 160/279 (57%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 562 VAELDVNQSFAQAA-----------VLHAWTRPELCSDSG--ILNITGGRHPVV--ENHL 606
Query: 806 -GGLPVPNDILL--GEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE+S D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 607 RAGDFVPNSIKLLSGENSNPEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 666
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 667 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 726
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ L+H + + +
Sbjct: 727 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR---------LEHEKII--NLKLDVLEA 775
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 776 EGKIVFLKKVVHGAAGNSYGIHVAGLAGIPQSVLTRAEN 814
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 161/391 (41%), Gaps = 56/391 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
K + +QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ G
Sbjct: 3 KPQTPMMRQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCG 60
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTI 386
I + +L+ G K+ EQ + RK+V V+TP T D +
Sbjct: 61 IPYHAAKIYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFL 114
Query: 387 GPDAVHLLAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ + LA EGN G D G A++D + +
Sbjct: 115 EQGSNNYLAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKE 171
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV 494
+ +++PKE++ + Q +F A L P+M + D S K+L
Sbjct: 172 IGRINPKEILIQ--------QSIQNEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLC 223
Query: 495 ------QLNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
L G+ + SP + LE + DI + + + + LDD R
Sbjct: 224 STFGTENLKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTR 283
Query: 542 -NGDILPYKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDV 596
N ++L LR + + L V T+ G RLLR I +PL+ I+ RLD
Sbjct: 284 KNLELLT------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKNEIDKRLDK 337
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
V L K+ + ++ + L + D+ERL GR+
Sbjct: 338 VNSLFKDGKASAIIRETLSSILDIERLSGRI 368
>gi|422325709|ref|ZP_16406737.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium
6_1_45]
gi|371667457|gb|EHO32582.1| DNA mismatch repair protein MutS [Erysipelotrichaceae bacterium
6_1_45]
Length = 843
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 164/296 (55%), Gaps = 29/296 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+AE + L+ + ++ HA++ ID L +A+ S RP
Sbjct: 514 LEAELFNHLLNQIKVYLPKLHDLSHALATIDAL--YALAEISSENGYTRP---------- 561
Query: 782 VRQDNGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
Q + G + +K HP V ND+ +GED+D L++TGPNMGGKST
Sbjct: 562 --QFHTGHSIHMKEARHPILDRMMKTTRYVSNDLEMGEDND-----ILMITGPNMGGKST 614
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T VI+AQ+GCFVP + + + D IFTR+GA+D IM+G+STF+VE E + LQ
Sbjct: 615 YMRQTVFLVIMAQIGCFVPAKKAEMPIFDQIFTRIGASDDIMSGQSTFMVEMIEANNALQ 674
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT +SL++ DE+GRGTST+DG A+A A+ ++ I + LF+THYH LT+ + +
Sbjct: 675 NATANSLILFDEIGRGTSTYDGMALAQAMIEYIMRNIKAKTLFSTHYHELTEMAEKNAGI 734
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H+ + + D ++ FLYR+ G +SYG+ VA +A +P V+E A
Sbjct: 735 RNVHV---------DVHEEDDKVTFLYRVLDGKADKSYGINVARLAHLPSSVLERA 781
Score = 106 bits (264), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 177/406 (43%), Gaps = 72/406 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
K Y +K Q+ D ++F+++G FYE++ DA+ ELD +T G +V GI
Sbjct: 12 KHYLELKEQHEDAIIFYRLGDFYEMFFEDAKTASSELDLVLTGRNAGVEERVPMCGIPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD-A 390
+++L+ +GYKV +EQLE AK ++ R ++ +VTP T +D
Sbjct: 72 AAKGYIQRLIQKGYKVAIVEQLEDPALAKG-----LVKRDVIKIVTPGTIMDEVSDEKTT 126
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V++ ++ + +G A + C + D A+ +L+ + +E++
Sbjct: 127 VYIASLHDFQ---------FGLAVILCEMTTGELRAQLIDKHVMAIQKVLLGNNVREIVI 177
Query: 451 ENR------GLCKEAQKALRKFSAGSAALE-------------LTPAMAV-TDFLDASEV 490
+ + + +E Q + +A E + A V T++LD ++
Sbjct: 178 QEKFDKKIVKMIEEMQTITVSYHNDNALKEEYRHLLNGIEDDRVETAFGVLTNYLDETQK 237
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
+ + LN A+E V ++D L S L L LR+
Sbjct: 238 RNMAHLN------------AVEMVYENDF----LQMDFSTKQNLELTSSLRSNS------ 275
Query: 551 YRDCLRMDGQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
QTL +LD C +S G RLL+ WI +PL D IN RLD VEYL N
Sbjct: 276 -------RSQTLWSFLDKCRSSMGSRLLKKWIEYPLVDTAMINRRLDAVEYLNDNFITKD 328
Query: 609 VVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVF 654
+ ++L + D+ERL RV A A+ +L LI K L+ ++F
Sbjct: 329 ELREHLGFVYDMERLSARV-AYGSANPRDILRLI--KTLEHTPQIF 371
>gi|377809458|ref|YP_005004679.1| DNA mismatch repair protein MutS [Pediococcus claussenii ATCC
BAA-344]
gi|361056199|gb|AEV95003.1| DNA mismatch repair protein MutS [Pediococcus claussenii ATCC
BAA-344]
Length = 870
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 166/299 (55%), Gaps = 29/299 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TDL+ + S + E + + E+ IS +DVL+SFAV + +P I Q
Sbjct: 515 TDLEYDLFSAIREEIKKSIDRLQELAKVISRLDVLQSFAVISEQYDFV--KPTITDQHD- 571
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ IK HP G VPNDI +G+D++ LL+TGPNM GK
Sbjct: 572 -----------IYIKNGRHPVVEKVMGHQSYVPNDINMGKDTE-----ILLITGPNMSGK 615
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L VI+AQ+GCFV E + + D IFTR+GA D +++G+STF+VE E
Sbjct: 616 STYMRQLALTVIMAQMGCFVAAESATIPIFDQIFTRIGAADDLISGQSTFMVEMQEANRA 675
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
LQ TQ+SLV+ DE+GRGT+T+DG A+A ++ + + ++ + LF+THYH LT +
Sbjct: 676 LQNGTQNSLVLFDEIGRGTATYDGMALAQSIIEYIHQNVHAKTLFSTHYHELTDLDQTLD 735
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ H+ ++ + LVFL+++ G +SYG+ VA +AG+P +++ A+
Sbjct: 736 RLKNVHVGAVEQNGN---------LVFLHKMEDGPADKSYGIHVAKLAGMPNNLLKRAN 785
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 122/460 (26%), Positives = 203/460 (44%), Gaps = 65/460 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI- 333
KQY+ +K QY D LF+++G FYEL+ DA G + L+ +TL+ K I G+
Sbjct: 12 KQYFEIKKQYPDAFLFYRIGDFYELFYDDAVKGSQILE--LTLTARSKNADDPIPMCGVP 69
Query: 334 ----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIG 387
+ ++ LV +GYKV EQ+E AK ++ R+++ +VTP TT D T
Sbjct: 70 FHAAQNYIDILVEQGYKVAICEQMEDPRTAKG-----MVKREVIQLVTPGTTTDQKATDS 124
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASC--AALGALLMQVSP 445
+ +L + + DN YGF +VD A + V ++D S ++G V
Sbjct: 125 KNNNYLTVL---HANEDNSK--YGFGYVDLATGELKVALLSDLESIINESVG-----VQT 174
Query: 446 KEVIYENR------GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
KE++ ++R KE + K S + EL + D E + + QL Y
Sbjct: 175 KEIVIDDRIPENFIERFKELNILVSKQSKVDVSAEL--SYLSQDLGPQLEKETIEQLLMY 232
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG 559
+ L+ + ++ F S + L L ++R G + G
Sbjct: 233 VQDTQKRSLSHLQKAIAYEPSFFLRMDQASKYN-LELTTLIRTG------------KKQG 279
Query: 560 QTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
L+ LD+ T+ G RLL+ W+ PL + I R + VE L+ + + L K+
Sbjct: 280 TLLWLLDATKTAMGGRLLKQWLDRPLIQKKAIIERQNQVEILVNHFFERSSLQDELVKVY 339
Query: 619 DLERLLGRV-------KARVQ-ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLML 670
DLERL GRV + +Q +S + +P I + + F ++++ L D+ L
Sbjct: 340 DLERLAGRVAFGNVNGRDLIQLKTSLLQVPKIQHVLEELAEPAFDAMLEHLDPVEDIADL 399
Query: 671 MHKEGHIIPSLSRIFKPPIFDGS---DGLDKFLTQFEAAI 707
++ S+S + DG+ DG +K L Q+ A+
Sbjct: 400 INN------SISEDAPISVTDGNLIKDGYNKTLDQYRDAM 433
>gi|220932004|ref|YP_002508912.1| DNA mismatch repair protein MutS [Halothermothrix orenii H 168]
gi|254766630|sp|B8CX98.1|MUTS_HALOH RecName: Full=DNA mismatch repair protein MutS
gi|219993314|gb|ACL69917.1| DNA mismatch repair protein MutS [Halothermothrix orenii H 168]
Length = 896
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 168/292 (57%), Gaps = 38/292 (13%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
IS +DVL S A A+ R P R +N G + IKG HP G
Sbjct: 552 ISKLDVLTSLA------QNALERDYNRP-------RINNDGVIEIIKG-RHPVVEDMGKG 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND L + + R +++TGPNM GKST +R L V++AQ+G FVP + + +
Sbjct: 598 AFVPNDTYLDLEEE----RFIIITGPNMSGKSTYMRQVALIVLMAQMGSFVPADKATIGI 653
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D + TG+STF+VE E A+++ AT++SL+ILDE+GRGTST+DG +IA+
Sbjct: 654 VDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNNATRNSLIILDEVGRGTSTYDGLSIAW 713
Query: 928 AVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS---KGDQE 982
AV + +RI R LFATHYH LT + + P + +NY+ + D++
Sbjct: 714 AVSEYINNPDRIGARTLFATHYHELT-QLENRPGI-------------KNYNVLVEEDED 759
Query: 983 LV-FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
V FL+++ G ESYG++VA +AG+P +++ A ++K ES K+
Sbjct: 760 GVHFLHKIIPGKASESYGIEVAQLAGLPMEIIIRAQEILAELEKKGKESTKT 811
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/484 (26%), Positives = 210/484 (43%), Gaps = 107/484 (22%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ K++ +QY ++K++Y D +LFF++G FYE++ DA+I +ELD +T G K
Sbjct: 1 MSKLTPMMQQYQSIKNKYKDAILFFRLGDFYEMFNDDAKIAARELDLALTARNKGGGEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + + KL+ +GYKV EQ+E +AK ++SR++V ++TP T ++
Sbjct: 61 PMAGVPCHSAESYIAKLLEKGYKVAICEQIEDPSEAKG-----LVSREVVRIITPGTIIE 115
Query: 384 GTIGPDAVHLLAIKEGN------CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
+L KE N C D+ GF++VD + +V + S
Sbjct: 116 N-------EMLKDKENNYLASAICYKDH----LGFSYVDISTGEFYVTQFSQKFSDKVWD 164
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
L ++ P+EVI +CKE ++ +F D + Q+N
Sbjct: 165 E-LDRIQPREVI-----ICKELEET-------------------ENFADKKK-----QMN 194
Query: 498 GYFNGSSSPWSKALENVMQHDI------GFS---------ALGGLISHLSRLMLDDVLRN 542
+N S KA N + GF A G +I+ L +
Sbjct: 195 FVYNYSRIEKVKAAYNFLLEHFKTNSLSGFGCEDKPAAILAAGEIINFLKDTQKRTLEHI 254
Query: 543 GDILPYKVYRDCLRMDGQTLY--------------------LDSCVTSSGKRLLRSWICH 582
I Y + D + +D T Y LD +TS G RL++ WI
Sbjct: 255 NRITTYNL-TDYMVLDSATRYNLELTSTIRGNKHKGSLLNVLDQTITSMGGRLIKKWINQ 313
Query: 583 PLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV-----KARVQAS--- 634
PL D I RLD VE L+ N ++ + ++L+ + DLER+LG+V AR A+
Sbjct: 314 PLIDRNKIETRLDAVEELVNNYLLLQEIREHLKGIYDLERILGKVSYGSANARDLAALKY 373
Query: 635 SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSD 694
S + LP I K + + K+F ++ + +DL L+ + S + +PP+
Sbjct: 374 SILKLPQIKKDLEQLNTKLFKNMHETFDPLIDLAGLLDR--------SIVDEPPVSVREG 425
Query: 695 GLDK 698
GL K
Sbjct: 426 GLIK 429
>gi|302692610|ref|XP_003035984.1| hypothetical protein SCHCODRAFT_52102 [Schizophyllum commune H4-8]
gi|300109680|gb|EFJ01082.1| hypothetical protein SCHCODRAFT_52102 [Schizophyllum commune H4-8]
Length = 1152
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 141/223 (63%), Gaps = 6/223 (2%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPND+ +G S PR+ ++TGPNMGGKS+ +R L I+AQ+GC+VP E +SL D
Sbjct: 833 VPNDVGMGRGS----PRSKIITGPNMGGKSSCVRMVALIAIMAQIGCYVPAEAVRMSLLD 888
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
++ TR+GA+D + G STF+VE TET+ +L AT+ SLVILDELGRGTSTFDG AIA A
Sbjct: 889 SVLTRMGASDDLARGRSTFMVEMTETSEILHTATERSLVILDELGRGTSTFDGMAIADAT 948
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
L+ +C+ LF THY + ++++ A++++ G +E+ FLYRL
Sbjct: 949 MHYLLSEKHCKTLFITHYPLVATNLEQKFMKEVENLHMAYRADLR--IDGTREITFLYRL 1006
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
TSG ES+G++ +AG+P+ V+ AS + + + + K
Sbjct: 1007 TSGITSESFGVECGRLAGLPETVLRTASQRSQSFQVEVEARMK 1049
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 169/426 (39%), Gaps = 90/426 (21%)
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL------DWKITLSGVGKCRQVG 327
+KQ +K +L ++G Y+ + DA + KEL D ++ + R+
Sbjct: 179 EKQVLELKKANPGTVLMVEIGYKYKFFGEDAHVAAKELGMVCYNDRNFDVATIPSHRR-- 236
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSV-ISRKLVNVVTPSTTVD--- 383
D ++KL+++GY+VG +Q ET+ K S R+L + T +T VD
Sbjct: 237 ------DIHLKKLLSQGYRVGVCDQTETAALKKVSDQRSAPFRRELTRLYTAATYVDDLD 290
Query: 384 ------GTIGPDAVHLLAIKEGNCG-----------PDNGSVVYGFAFVDCAALRVWVGT 426
G+ P ++ G P +G VV+ AF D +R+ +
Sbjct: 291 SVDDISGSSAPPFTCIVEESTSGAGADVHVAMISISPSSGDVVWD-AF-DDNPMRLEL-- 346
Query: 427 INDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA------------LE 474
+ A L+ P E++ GL QK L F+ +A+ ++
Sbjct: 347 ----EASAYHDTRLVHTRPAELLLPKTGLSGPTQKMLGHFTVATASGTQTRVEHFKGQMD 402
Query: 475 LTPAMA-VTDFLDASEVKKLVQLNGYFNGSSSPWSKALE-----NVMQHDIGFS-----A 523
T A A V++F K +G +G+S A E +M F A
Sbjct: 403 YTDAFAYVSEFYSQ---KAPATSDGSISGASHLNPNASEAFTSGALMAAAADFPNLVVIA 459
Query: 524 LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------Y 563
L I HLS L D LR R + + G TL
Sbjct: 460 LAHTIKHLSAFGLADALRETRFFARFAARTHMLLAGNTLRNLEIYANETDGEVRGSLLWV 519
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN-SEVVMVVAQYLRKLPDLER 622
LD T G RLLRSW+ PL D ++ R+ VE L+ + SE ++ + Q LR++PDL +
Sbjct: 520 LDQTQTKFGARLLRSWVGRPLIDKRVLDERVAAVEELVSSASEKLVTLRQLLRRMPDLAK 579
Query: 623 LLGRVK 628
L +++
Sbjct: 580 GLCKIQ 585
>gi|27597156|dbj|BAC55150.1| ORF23 [Methylobacillus sp. 12S]
Length = 863
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 163/296 (55%), Gaps = 32/296 (10%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
HA++ +DV+ +FA A + + P+ A Q G ++ L PF
Sbjct: 554 HAVAQLDVIATFAERAQALN------YVQPEFTAEAGIQITAGRHPVVEQLAQPF----- 602
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
+ ND+ L + LL+TGPNMGGKST +R T L V+LA GCFVP + +
Sbjct: 603 ----IANDVQL-----TPYRQLLLITGPNMGGKSTYMRQTALIVLLAHCGCFVPAKAARI 653
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
D IFTR+GA+D + G STF+VE TETA++L AT+ SLV+LDE+GRGTSTFDG ++
Sbjct: 654 GQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEHSLVLLDEIGRGTSTFDGLSL 713
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+AV RQL+ER LFATHY LT+ H+ N +VF
Sbjct: 714 AWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNG---------IVF 764
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
L+ + G +SYGLQVA +AG+P+ VV AA + +++ ++ ++ Q FS
Sbjct: 765 LHAVQEGPASQSYGLQVAQLAGIPRSVVNAAKRKLVQLEQ---QNIQAGPQSDMFS 817
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 124/480 (25%), Positives = 201/480 (41%), Gaps = 90/480 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---CRQVGISES 331
+QY +K+QY D+LLF+++G FYEL+ DAE + L +T G R G+
Sbjct: 21 RQYLGIKAQYPDMLLFYRMGDFYELFHDDAEKAARLLGITLTKRGASNGEPIRMAGVPYH 80
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ + KL G V EQ+ ++K + R++ ++TP T D + D
Sbjct: 81 AAEQYLAKLAKLGEAVAICEQIGDPAKSK-----GPVERQVTRILTPGTLTDSALLDDTR 135
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L+AI G + G A ++ AA ++ + + + L L ++SP E++
Sbjct: 136 DNLLVAISAGEG-------IVGLARINLAAGQLVLTEV----APGLLAQELERISPAELL 184
Query: 450 ----YENRGL----CKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVKKLVQLNG- 498
Y++ + C + + A +F SA LT D +++ + + G
Sbjct: 185 LADGYQHPSIEALKCPKKRLAPWQFDLDSATQLLTQQFNTHDLAGFGCADLTQAISAAGA 244
Query: 499 ------YFNGSSSPWSKALENVMQHD--IGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
+ SS P AL +V Q I F A + L +D LR G+ P
Sbjct: 245 LLDYVRHTQRSSLPHINAL-SVEQSGEYIQFDA-----ASRRNLEIDQTLR-GESAP--- 294
Query: 551 YRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
TLY L++C T+ G RLLR W+ HPL+D I RL+ V L+ + + +
Sbjct: 295 ----------TLYSLLNTCRTAMGARLLRQWLHHPLRDHAAIQARLEAVAALL-HGDALQ 343
Query: 609 VVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAM--D 666
+ L + D+E R+ ARV S L G + QQ+ + GL A+
Sbjct: 344 APRRLLNNIGDIE----RITARVALKSARPRDLSGLRDSLQQLPELQQSLAGLPSALLQQ 399
Query: 667 LLMLMHKEGHIIPSLSRIFKPP----------IFDGSDG-LD----------KFLTQFEA 705
++L+ + L+ +P I DG D LD +FL +FEA
Sbjct: 400 AMVLLQPPAEVTSLLAAAIRPEPSSVLREGGVIADGYDAELDELRGIQTNCGEFLLKFEA 459
>gi|56419841|ref|YP_147159.1| DNA mismatch repair protein MutS [Geobacillus kaustophilus HTA426]
gi|81675852|sp|Q5L0E5.1|MUTS_GEOKA RecName: Full=DNA mismatch repair protein MutS
gi|56379683|dbj|BAD75591.1| DNA mismatch repair protein [Geobacillus kaustophilus HTA426]
Length = 896
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 176/328 (53%), Gaps = 38/328 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE SI +E LF+ Q + I AI+ +DVL+SFA +
Sbjct: 488 PELKEKEALILEAEEKSIELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISD 547
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG-LPVPNDILLGEDSD 821
+ PQ V L I+G HP G + VPND + + +
Sbjct: 548 EYR------YVRPQFSTERV--------LVIQGGRHPVVEKVLGAQMYVPNDCYMNRERE 593
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP E VL + D +FTR+GA D +
Sbjct: 594 -----MLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDL 648
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
G+STF+VE E + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I +
Sbjct: 649 SAGQSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKT 708
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT S P ++ H A A + N ++VFL+++ G +SYG+
Sbjct: 709 LFSTHYHELTALERSLPRLSNVH-ARAIEENG--------KVVFLHQIADGPADKSYGIH 759
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIGE 1029
VA +AG+P ++E A ++K+ G+
Sbjct: 760 VAELAGLPASLIERARAILAELEKAAGK 787
Score = 93.6 bits (231), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 161/387 (41%), Gaps = 85/387 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR--QVGISESG 332
+QY ++K+QY D LFF++G FYEL+ DA +EL+ +T G R G+
Sbjct: 3 QQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGDERVPMCGVPYHS 62
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDAV 391
+E+L+ +GYKV EQ+E + AK V+ R++V ++TP T ++G +
Sbjct: 63 AQGYIEQLIEKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTLMEGKGLTEKEN 117
Query: 392 HLLAIKEGNCGP-DNGSVVYGFAFVDCAA-------LRVWVGTINDDASCAALGALLMQV 443
H LA P +G+ YG A+ D + L W N+ + A ++
Sbjct: 118 HYLA----ALTPFADGT--YGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIVATD 171
Query: 444 SPKEVIYE-------------NRGLCKE--------AQKALRKFSAGSAALELTPAMAVT 482
S +E + E + LC E AQ+ LR+ AA L + T
Sbjct: 172 SGEEWVRELKERYGAAVSYEDDTSLCDEWNGVIGHVAQEKLRQ-----AAARLLHYLVRT 226
Query: 483 D--FLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
LD + +L Q++ Y + S+L L+ V
Sbjct: 227 QKRRLDHLQPAELYQVDHYMK--------------------------MDRHSKLHLELV- 259
Query: 541 RNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ R R LD VT+ G RLL+ W+ PL D I RLD VE L
Sbjct: 260 --------ETVRSKGRKGSLLWLLDETVTAMGGRLLKQWLDRPLIDRREIERRLDFVETL 311
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + LR + D+ERL+GRV
Sbjct: 312 KTSYFERQELRDRLRGVYDIERLVGRV 338
>gi|260555570|ref|ZP_05827791.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
gi|260412112|gb|EEX05409.1| DNA mismatch repair protein MutS [Acinetobacter baumannii ATCC 19606
= CIP 70.34]
gi|452948878|gb|EME54350.1| DNA mismatch repair protein MutS [Acinetobacter baumannii MSP4-16]
Length = 881
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ + S Q F++L E + + +V
Sbjct: 811 QQQQHLQISVQSDLFATLDSEVTPSTQVIEKV 842
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>gi|261419511|ref|YP_003253193.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC61]
gi|319766326|ref|YP_004131827.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC52]
gi|448237462|ref|YP_007401520.1| DNA mismatch repair protein [Geobacillus sp. GHH01]
gi|261375968|gb|ACX78711.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC61]
gi|317111192|gb|ADU93684.1| DNA mismatch repair protein MutS [Geobacillus sp. Y412MC52]
gi|445206304|gb|AGE21769.1| DNA mismatch repair protein [Geobacillus sp. GHH01]
Length = 903
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 176/328 (53%), Gaps = 38/328 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE SI +E LF+ Q + I AI+ +DVL+SFA +
Sbjct: 495 PELKEKEALILEAEEKSIELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISD 554
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG-LPVPNDILLGEDSD 821
+ PQ V L I+G HP G + VPND + + +
Sbjct: 555 EYR------YVRPQFSTERV--------LVIQGGRHPVVEKVLGAQMYVPNDCYMNRERE 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP E VL + D +FTR+GA D +
Sbjct: 601 -----MLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDL 655
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
G+STF+VE E + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I +
Sbjct: 656 SAGQSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKT 715
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT S P ++ H A A + N ++VFL+++ G +SYG+
Sbjct: 716 LFSTHYHELTALERSLPRLSNVH-ARAIEENG--------KVVFLHQIADGPADKSYGIH 766
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIGE 1029
VA +AG+P ++E A ++K+ G+
Sbjct: 767 VAELAGLPASLIERARAILAELEKAAGK 794
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/387 (27%), Positives = 161/387 (41%), Gaps = 84/387 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LFF++G FYEL+ DA +EL+ +T G +V G+
Sbjct: 9 QQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDA 390
+E+L+ +GYKV EQ+E + AK V+ R++V ++TP T ++G +
Sbjct: 69 SAQGYIEQLIEKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTLMEGKGLTEKE 123
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDASCAALGALLMQV 443
H LA +G+ YG A+ D + L W N+ + A ++
Sbjct: 124 NHYLAALTPFA---DGT--YGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIVATD 178
Query: 444 SPKEVIYE-------------NRGLCKE--------AQKALRKFSAGSAALELTPAMAVT 482
S +E + E + LC E AQ+ LR+ AA L + T
Sbjct: 179 SGEEWVRELKERYGAAVSYEDDTSLCDEWNGVIGHVAQEKLRQ-----AAARLLHYLVRT 233
Query: 483 D--FLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
LD + +L Q++ Y + S+L L+ V
Sbjct: 234 QKRRLDHLQPAELYQVDHYMK--------------------------MDRHSKLHLELV- 266
Query: 541 RNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ R R LD VT+ G RLL+ W+ PL D I RLD VE L
Sbjct: 267 --------ETVRSKGRKGSLLWLLDETVTAMGGRLLKQWLDRPLIDRREIERRLDFVETL 318
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + LR + D+ERL+GRV
Sbjct: 319 KTSYFERQELRDRLRGVYDIERLVGRV 345
>gi|297530518|ref|YP_003671793.1| DNA mismatch repair protein MutS [Geobacillus sp. C56-T3]
gi|297253770|gb|ADI27216.1| DNA mismatch repair protein MutS [Geobacillus sp. C56-T3]
Length = 903
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 176/328 (53%), Gaps = 38/328 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE SI +E LF+ Q + I AI+ +DVL+SFA +
Sbjct: 495 PELKEKEALILEAEEKSIELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISD 554
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG-LPVPNDILLGEDSD 821
+ PQ V L I+G HP G + VPND + + +
Sbjct: 555 EYR------YVRPQFSTERV--------LVIQGGRHPVVEKVLGAQMYVPNDCYMNRERE 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP E VL + D +FTR+GA D +
Sbjct: 601 -----MLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDL 655
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
G+STF+VE E + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I +
Sbjct: 656 SAGQSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKT 715
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT S P ++ H A A + N ++VFL+++ G +SYG+
Sbjct: 716 LFSTHYHELTALERSLPRLSNVH-ARAIEENG--------KVVFLHQIADGPADKSYGIH 766
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIGE 1029
VA +AG+P ++E A ++K+ G+
Sbjct: 767 VAELAGLPASLIERARAILAELEKAAGK 794
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 159/388 (40%), Gaps = 86/388 (22%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LFF++G FYEL+ DA +EL+ +T G +V G+
Sbjct: 9 QQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGGDERVPMCGVPYH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+E+L+ +GYKV EQ+E + AK V+ R++V ++TP T ++ G +
Sbjct: 69 SAQGYIEQLIEKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTLMEGKGLTEKE 123
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDASCAALGALLMQ 442
+L A+ G YG A+ D + L W N+ + A ++
Sbjct: 124 NHYLAALTPFADG------TYGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIVAT 177
Query: 443 VSPKEVIYE-------------NRGLCKE--------AQKALRKFSAGSAALELTPAMAV 481
S +E + E + LC E AQ+ LR AA L +
Sbjct: 178 DSGEEWVRELKERYGAAVSYEDDTSLCDEWNGVIGHVAQEKLR-----MAAARLLHYLVR 232
Query: 482 TD--FLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV 539
T LD + +L Q++ Y + S+L L+ V
Sbjct: 233 TQKRRLDHLQPAELYQVDHYMK--------------------------MDRHSKLHLELV 266
Query: 540 LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+ R R LD VT+ G RLL+ W+ PL D I RLD VE
Sbjct: 267 ---------ETVRSKGRKGSLLWLLDETVTAMGGRLLKQWLDRPLIDRREIERRLDFVET 317
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L + + LR + D+ERL+GRV
Sbjct: 318 LKTSYFERQELRDRLRGVYDIERLVGRV 345
>gi|375008283|ref|YP_004981916.1| DNA mismatch repair protein mutS [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287132|gb|AEV18816.1| DNA mismatch repair protein mutS [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 902
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 176/328 (53%), Gaps = 38/328 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE SI +E LF+ Q + I AI+ +DVL+SFA +
Sbjct: 494 PELKEKEALILEAEEKSIELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISD 553
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG-LPVPNDILLGEDSD 821
+ PQ V L I+G HP G + VPND + + +
Sbjct: 554 EYR------YVRPQFSTERV--------LVIQGGRHPVVEKVLGAQMYVPNDCYMNRERE 599
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP E VL + D +FTR+GA D +
Sbjct: 600 -----MLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDL 654
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
G+STF+VE E + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I +
Sbjct: 655 SAGQSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKT 714
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT S P ++ H A A + N ++VFL+++ G +SYG+
Sbjct: 715 LFSTHYHELTALERSLPRLSNVH-ARAIEENG--------KVVFLHQIADGPADKSYGIH 765
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIGE 1029
VA +AG+P ++E A ++K+ G+
Sbjct: 766 VAELAGLPASLIERARAILAELEKAAGK 793
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 160/386 (41%), Gaps = 83/386 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR--QVGISESG 332
+QY ++K+QY D LFF++G FYEL+ DA +EL+ +T G R G+
Sbjct: 9 QQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGDERVPMCGVPYHS 68
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDAV 391
+E+L+ +GYKV EQ+E + AK V+ R++V ++TP T ++G +
Sbjct: 69 AQGYIEQLIEKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTLMEGKGLTEKEN 123
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDASCAALGALLMQVS 444
H LA +G+ YG A+ D + L W N+ + A ++ S
Sbjct: 124 HYLAALTPFA---DGT--YGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIVATDS 178
Query: 445 PKEVIYE-------------NRGLCKE--------AQKALRKFSAGSAALELTPAMAVTD 483
+E + E + LC E AQ+ LR+ AA L + T
Sbjct: 179 GEEWVRELKERYGAAVSYEDDTSLCDEWNGVIGHVAQEKLRQ-----AAARLLHYLVRTQ 233
Query: 484 --FLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
LD + +L Q++ Y + S+L L+ V
Sbjct: 234 KRRLDHLQPAELYQVDHYMK--------------------------MDRHSKLHLELV-- 265
Query: 542 NGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
+ R R LD VT+ G RLL+ W+ PL D I RLD VE L
Sbjct: 266 -------ETVRSKGRKGSLLWLLDETVTAMGGRLLKQWLDRPLIDRREIERRLDFVETLK 318
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + LR + D+ERL+GRV
Sbjct: 319 TSYFERQELRDRLRGVYDIERLVGRV 344
>gi|239610962|gb|EEQ87949.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis ER-3]
gi|327351661|gb|EGE80518.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis ATCC
18188]
Length = 941
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 162/295 (54%), Gaps = 20/295 (6%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA + + A RP I P+ V +K HP ++
Sbjct: 592 LAHLDVIVSFAHVSVHAPTAYVRPKIHPRGTGNTV----------LKEARHPCMEMQDDI 641
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L + L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 642 SFITNDVFLLRNESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 697
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 698 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 757
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN----SENYSKG--DQ 981
A+ +V I C LFATH+H LT +P+ AF N EN S G +
Sbjct: 758 AISEHIVTEIRCFALFATHFHELTALQEQYPNSVKNLHVVAFIGNGTEQKENDSTGKSKR 817
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQ 1036
E+ LYR+ G C +S+G+ VA + P+KVV A A ++ + +++Q
Sbjct: 818 EVTLLYRVEPGVCDQSFGIHVAELVRFPEKVVNMARQKAEELEDFTSSTIDNAQQ 872
Score = 47.8 bits (112), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKL 617
+LY L+ C T +G RLL W+ PL + E I R +VE + ++E+ + + +LR +
Sbjct: 317 SLYGLLNHCKTPAGSRLLAQWLKQPLMNHEDIEKRQQLVEAFVVDTELRQTMQEDHLRSI 376
Query: 618 PDLERLLGRVK 628
PDL RL R +
Sbjct: 377 PDLYRLAKRFQ 387
>gi|421652192|ref|ZP_16092555.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC0162]
gi|425750961|ref|ZP_18868915.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-348]
gi|445457341|ref|ZP_21446486.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC047]
gi|408506465|gb|EKK08173.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC0162]
gi|425484746|gb|EKU51146.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-348]
gi|444776921|gb|ELX00958.1| DNA mismatch repair protein MutS [Acinetobacter baumannii OIFC047]
Length = 881
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/332 (35%), Positives = 175/332 (52%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ + S Q F++L E + + +V
Sbjct: 811 QQQQHLQISVQSDLFATLDSEVTPSTQVIEKV 842
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
>gi|333395619|ref|ZP_08477436.1| DNA mismatch repair protein MutS [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 881
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 42/318 (13%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTAS 762
P+ + + L+A+ S +E LF Q + IH ++ +DVL+SFAV +
Sbjct: 497 PELKEKETLILEAQEKSTALEYDLFTAVREQVKQQIHRLQRLAKGVAALDVLQSFAVVSE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGED 819
RP + L+I HP LGE +PND+ + D
Sbjct: 557 TYHYV--RPTLTKAHD------------LEIVAGRHPVVEKVLGEQKY--IPNDVTM--D 598
Query: 820 SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD 879
+D+ + LL+TGPNM GKST +R L VI+AQ+GCF+P L + D IFTR+GA D
Sbjct: 599 ADNTI---LLITGPNMSGKSTYMRQLALTVIMAQIGCFIPATKATLPIFDQIFTRIGAAD 655
Query: 880 RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939
+++G+STF+VE E+ + L AT++SL++ DE+GRGT+T+DG A+A A+ L + ++
Sbjct: 656 DLISGQSTFMVEMMESNTALAHATENSLILFDEIGRGTATYDGMALAQAIIEYLHDHVHA 715
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LF+THYH LT PH+ H+ ++ + LVFL+++ +GA +SYG
Sbjct: 716 KTLFSTHYHELTALDTDLPHLRNVHVGAVEENGT---------LVFLHKMMAGAADKSYG 766
Query: 1000 LQVAVMAGVPQKVVEAAS 1017
+ VA +AG+P ++ A+
Sbjct: 767 IHVAKLAGLPDSLLTRAT 784
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 149/362 (41%), Gaps = 37/362 (10%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISESG 332
QY +K Y D LF+++G FYEL+ DA G + L+ +T S G+
Sbjct: 13 QYNAIKKDYPDAFLFYRIGDFYELFYDDAIKGAQLLELTLTARNKSATDPIPMCGVPHHA 72
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPDA 390
+ ++ LV +GYKV EQ+E R ++ R+++ +VTP T ++
Sbjct: 73 AQNYIDILVDKGYKVAICEQVE-----DPRTAVGMVKREVIQLVTPGTIMEQKAATAKSN 127
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+L A+ E YGFA+ D + + V + A A+ +M + KE++
Sbjct: 128 NYLTALVETKKDQ------YGFAYTDLSTGELKVSRL---AGADAVVNEVMSLRTKELV- 177
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL-----DASEVKKLVQLNGYFNGSSS 505
N + + L K + + A F+ D +EVK + QL Y +
Sbjct: 178 ANHEVTPQILTNLTKLGVLISYQDQVDPRAELSFVTQGLADLTEVKVVEQLLMYLTVTQK 237
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLD 565
L+ +++ L +D +N L + R R LD
Sbjct: 238 RSLAHLQVAEEYEPS-----------EFLKMDHYAKNNLELTTSI-RTGQRSGTLLWLLD 285
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
+ T+ G RLL+ W+ PL + I R D V LM + + L K+ DLERL G
Sbjct: 286 ATKTAMGGRLLKQWLDRPLINATQIKQRQDKVASLMDHFFERSSLQDELTKVYDLERLAG 345
Query: 626 RV 627
RV
Sbjct: 346 RV 347
>gi|430853214|ref|ZP_19470944.1| DNA mismatch repair protein mutS [Enterococcus faecium E1258]
gi|430541036|gb|ELA81213.1| DNA mismatch repair protein mutS [Enterococcus faecium E1258]
Length = 881
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKKLETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 195/464 (42%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YFN----GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y + S + KA+E H + L L +R G
Sbjct: 231 YLSVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKQGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|20807804|ref|NP_622975.1| DNA mismatch repair protein MutS [Thermoanaerobacter tengcongensis
MB4]
gi|44888228|sp|Q8RA71.1|MUTS_THETN RecName: Full=DNA mismatch repair protein MutS
gi|20516362|gb|AAM24579.1| MutS-like ATPases involved in mismatch repair, family 2
[Thermoanaerobacter tengcongensis MB4]
Length = 869
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 166/294 (56%), Gaps = 28/294 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ + + + IK HP +
Sbjct: 554 IAIIDVLISFAEVAE--TNKYVKPIVDYEDR------------IVIKEGRHPVVETISDE 599
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+GCFVP + +
Sbjct: 600 GFVANDIDIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQVGCFVPASYARIGI 654
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L AT SL+ILDE+GRGTST+DG +IA
Sbjct: 655 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSLIILDEVGRGTSTYDGMSIAQ 714
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL+
Sbjct: 715 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKLRGVRNFNVSVEEREDDIIFLH 765
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
++ G SYG+QV+ +AG+P ++E A A+++ + E S+F+
Sbjct: 766 KIVPGGSDRSYGIQVSKLAGLPYSIIERAKEILEALERDKAVKNELEEAVSQFA 819
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 174/393 (44%), Gaps = 69/393 (17%)
Query: 269 KMSAS--QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
KMS + +QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G +
Sbjct: 3 KMSVTPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERA 62
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ D ++KLV +GYKV EQLE +AK ++ R +V + TP T
Sbjct: 63 PMAGVPYHAADFYIDKLVKKGYKVAICEQLEDPSKAKG-----LVKRDVVRIYTPGTI-- 115
Query: 384 GTIGPDAV------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
I P+++ +L+++ DN YG VD ++ I + + +
Sbjct: 116 --INPESMDEKSNNYLVSVYREK---DN----YGICAVDVTTGELYATEIKNCKNGKRIY 166
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
+ + SP E+I N K K ++ F + A+ A ++ +SE+
Sbjct: 167 DEIAKYSPSEII-SNEEFLKN-NKYIKVFKNNNCAVN---AYKPLNYEASSEL------- 214
Query: 498 GYFNGSSSPWSKALENVMQHDIGF--SALGGLISHLSRLM-------------------- 535
+ K +E + D F +LG L+S+L L
Sbjct: 215 -----IEKQFDKKVEELELEDKKFVIHSLGALLSYLKELQKTSLKHINKLTLYQDNSYMG 269
Query: 536 LD-DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
LD + +RN +IL R+ + LD VT G RLL+ W+ PL D + I RL
Sbjct: 270 LDSNAIRNLEILESN--RNKSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDEIEKRL 327
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
D VE L N + + + L K+ DLERL ++
Sbjct: 328 DAVEELFNNYRERIELKELLNKVYDLERLASKI 360
>gi|421076048|ref|ZP_15537050.1| DNA mismatch repair protein mutS [Pelosinus fermentans JBW45]
gi|392525907|gb|EIW49031.1| DNA mismatch repair protein mutS [Pelosinus fermentans JBW45]
Length = 864
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 150/245 (61%), Gaps = 23/245 (9%)
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
L VPND L S++ + ++TGPNM GKST +R L V++AQ+G F+P ++S
Sbjct: 596 LFVPNDSELNHHSNEIM----IITGPNMAGKSTYMRQVALLVLMAQIGSFIPAREAIISP 651
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D + TG+STF+VE E A +L+ AT SL+ILDE+GRGTSTFDG +IA
Sbjct: 652 VDRIFTRVGASDDLSTGQSTFMVEMNEVAQILKHATSQSLIILDEIGRGTSTFDGMSIAR 711
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + ER+ + LFATHYH LT E A + H +++ + A K + +VFL
Sbjct: 712 AVIEYIKERVKAKTLFATHYHELT-ELADY-HKIVKNYSVAVKERGSD-------VVFLR 762
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK----------SIGESFKSSEQR 1037
R+ G +SYG+ VA +AG+PQKV++ A + +++ S+ ES ++
Sbjct: 763 RIIPGGADKSYGIHVAQLAGLPQKVIKRAQELLVELEQNHVQSQNLSLSVEESAAATTPM 822
Query: 1038 SEFSS 1042
S F+S
Sbjct: 823 SLFTS 827
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 99/431 (22%), Positives = 190/431 (44%), Gaps = 55/431 (12%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG-KCRQVG 327
K + +QY +KS++ + +LFF++G FYE++ DAE+ +EL+ +T G + G
Sbjct: 4 KYTPMMEQYLEIKSKHENEILFFRMGDFYEMFFTDAELASRELEITLTARDGGQRVPMCG 63
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG 387
I D + KL+++GYKV EQ+E +QAK ++ R+++ ++TP T + +
Sbjct: 64 IPYHAADTYIAKLISKGYKVAICEQVEDPKQAKG-----IVKREVIKIITPGTIIAENLL 118
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
PD + + + +C +W T AL L ++ P E
Sbjct: 119 PDNNNNYLAVLYEEEEELILAAADISTGEC----LW-ATFLGSQRLTALYDQLFRLMPTE 173
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPW 507
++ ++ E + L F + + +A+ + S++ K +F
Sbjct: 174 LVLASK---IENIEKLNTFISNRISHCTHTTLAIDNLKLVSDLPK-----QHF------- 218
Query: 508 SKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY---------------- 551
++++ Q D+ +A+G L+ +L + + D+ ++ Y +
Sbjct: 219 --MMDDLPQQDVALAAIGCLLYYLHQTVKTDLSHINRLINYNAFEYLTIDSTSMRNLEVT 276
Query: 552 ---RDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
RD + D LD T+ G RLL+ W+ +PL + I R D + L++ +
Sbjct: 277 RNVRDGGKKDTLLYVLDYTKTAMGGRLLKKWLEYPLMNTTHIIQRQDSIAELLEKPTLRQ 336
Query: 609 VVAQYLRKLPDLERLLGRVKARVQA--------SSCIVLPLIGKKVLKQQVKVFGSLVKG 660
+ + L + DLER+L R++ + SS +VLP I +++ K +L
Sbjct: 337 TIHETLANIYDLERILTRIEVGTASARDLIALKSSLVVLPTIKEQLQKTNTIFLSNLHFY 396
Query: 661 LRIAMDLLMLM 671
L +DL+ L+
Sbjct: 397 LHTHVDLVTLV 407
>gi|170076810|ref|YP_001733448.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7002]
gi|169884479|gb|ACA98192.1| DNA mismatch repair protein MutS [Synechococcus sp. PCC 7002]
Length = 881
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 168/314 (53%), Gaps = 35/314 (11%)
Query: 718 DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQS 777
D+ L+ E + L E Q AI+ +DVL SFA TA RP I +
Sbjct: 561 DICSLEYEIFTTLRAEVAEHTDQIRTTAKAIAALDVLTSFAETAVYQGYC--RPEITTEK 618
Query: 778 KNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
L+I+ HP G GL VPN LG + + P ++LTGPN
Sbjct: 619 ------------TLEIEAGRHPVVEKSLGMGLFVPNSTYLGR-TQNSYPDLIILTGPNAS 665
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKS LR T L ++AQ+G FVP + V+ + D IFTR+GA D + TG+STF+VE ETA
Sbjct: 666 GKSCYLRQTGLIQLMAQVGSFVPAQSAVIPICDRIFTRVGAVDDLATGQSTFMVEMNETA 725
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK---- 952
++L AT+ SLV++DE+GRGT+TFDG +IA++V L I + +FATHYH L +
Sbjct: 726 NILNHATEKSLVLIDEIGRGTATFDGLSIAWSVSEYLATEIKAKTIFATHYHELNELASL 785
Query: 953 -EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
E ++ VT+Q M +E++FL+++ G SYG++ +AG+P+
Sbjct: 786 LENVANYQVTVQEMP--------------EEIIFLHQVRPGGADRSYGIEAGRLAGLPKS 831
Query: 1012 VVEAASHAALAMKK 1025
V++ A ++K
Sbjct: 832 VIQRAKQVMTQIEK 845
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 172/395 (43%), Gaps = 60/395 (15%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDW----KITLSGVGKCRQ 325
++ + Y ++K +Y + +L ++VG F+E + +DA +EL+ K + G+G+
Sbjct: 26 LTPMMQHYADLKDKYPNNILLYRVGDFFECFFMDAITVSRELELVCTSKESGKGIGRVPM 85
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDG 384
G+ ++ +L+ +GY V +Q+E + A A ++ R++ V+TP T T DG
Sbjct: 86 TGVPHHALERYSTQLLEKGYGVVICDQVEDAATAHAE--KRMVRREVQKVLTPGTLTDDG 143
Query: 385 TIGPDAVHLLA--IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
+ + LA + GN +G A+ D + D AAL L++
Sbjct: 144 MLRARQNNYLAAVVIAGNH--------WGLAYADISTGEFCTTQAQD---LAALNLELLR 192
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ P EV+Y + + +R + PA +DF A + LN
Sbjct: 193 LQPSEVLYPTDA--PDLNRLMRPGDRQTLLQNHLPACLPSDFCYALRSPREFDLN----- 245
Query: 503 SSSP-------WSKALENV-MQH-DIGFSALGGLISHLSR-------------------- 533
+ P W ++LE V +H + A GGL++++
Sbjct: 246 EAKPKLLMTFQW-RSLEGVGCEHLPLAVRAAGGLLAYVEETQQAYKVPFESLKTYSIDAF 304
Query: 534 LMLD-DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
L LD RN +I + RD LD T+ G R LR W+ PL D + I
Sbjct: 305 LQLDHQTRRNLEIT--QTVRDGSFYGSLLWALDVTCTNMGGRALRRWLLQPLLDPKAIAK 362
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
RLD V L++N+ + + Q L+++ DLER+ GR+
Sbjct: 363 RLDSVAELVENTNLRQDIRQLLKQIYDLERIAGRI 397
>gi|146297052|ref|YP_001180823.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|172046026|sp|A4XL47.1|MUTS_CALS8 RecName: Full=DNA mismatch repair protein MutS
gi|145410628|gb|ABP67632.1| DNA mismatch repair protein MutS [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 863
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 182/346 (52%), Gaps = 47/346 (13%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG- 806
I+ ID L SFA A +P++ G + IK HP G
Sbjct: 540 IAIIDALCSFAHIAI--DNRYTKPIVYL------------GDRIYIKNGRHPVVEKMIGY 585
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPND L D + R L++TGPNM GKST +R L VI+AQ+GCFVP E +
Sbjct: 586 SNFVPNDTELDNDQN----RVLIITGPNMAGKSTYMRQVALIVIMAQMGCFVPAEEAQIG 641
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IF+R+GA+D I +G+STF+VE +E A++L+ AT SL+I DE+GRGTST+DG +IA
Sbjct: 642 IVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFDEVGRGTSTYDGLSIA 701
Query: 927 YAVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+AV + + +I + LFATHYH LT+ L+ K+ + + + ++
Sbjct: 702 WAVLEFVADKSKIGAKTLFATHYHELTE---------LEEKISGVKNYRVDVKEEGKNII 752
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-------------AALAMKKSIGESF 1031
FL ++ G C SYG+ VA +AG+P++V++ A A ++K I F
Sbjct: 753 FLRKIVRGGCDSSYGIHVARLAGIPEEVLQRAEQILKKLEEADINRKEAKRLRKEIKREF 812
Query: 1032 KSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHEL 1077
+EQ FS +E ++ I N+ + N A + L L HE+
Sbjct: 813 --TEQIEFFSYKKDEIIEKIENLDIL--NITPIQALNILSELKHEI 854
Score = 94.7 bits (234), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 158/366 (43%), Gaps = 33/366 (9%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA I KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQRVKDCILFFRLGDFYEMFFDDAIIASKELEIALTARDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK V+ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSAHSYIAKLIEKGYKVAICEQVEDPKLAKG-----VVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
K N C + FVD + ++ I +D + +
Sbjct: 116 ENFS---------KANNFICCVARVESDFALTFVDISTGEMYACLIEND--IQKMINEIS 164
Query: 442 QVSPKEVIYENRGLCKEAQKALRK-FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
+ +P E++ + L E + +R+ +++ +E D +D ++ +N
Sbjct: 165 KYAPSEILISH--LDNELYEVIRENYNSFVQRIEFIEIDRCYDLIDKQ--MQITNINDKV 220
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLRMDG 559
S L + + + + L +D RN ++ + R
Sbjct: 221 ALSVGNLLNYLVDTQKISFNYIKKFEFYRVQNYLQIDLSTKRNLELTESIIARS----KK 276
Query: 560 QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
+L+ LD TS G RL++ W+ PL DV IN RLD VE L N ++M + L +
Sbjct: 277 NSLFGILDQAKTSMGSRLIKKWLERPLIDVVEINRRLDAVEELYNNFPLLMQIEGLLEGI 336
Query: 618 PDLERL 623
D+ERL
Sbjct: 337 YDIERL 342
>gi|346321824|gb|EGX91423.1| DNA mismatch repair protein Msh3 [Cordyceps militaris CM01]
Length = 1099
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 154/285 (54%), Gaps = 19/285 (6%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ + A++ +D L S + A+ P LP S P + I G HP A
Sbjct: 801 DAVSALATLDCLLSLSKVAAQPGYTC--PEFLPSS---------APPTIAITGGRHPMAE 849
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
G +P L + PR L+TGPNMGGKS+ +RA L V+LAQ+G FVP +
Sbjct: 850 QTLAGGYIPFSTTLAHPT----PRAHLVTGPNMGGKSSFVRALALIVLLAQVGSFVPADA 905
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
++L D I TR GA D + ESTF+VE +ETA +L+ AT SLVILDELGRGTST DG
Sbjct: 906 LRMTLCDAIHTRTGARDNLFASESTFMVEVSETARILRAATPRSLVILDELGRGTSTHDG 965
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
AIA AV +V C LF THY L + +T HM K ++ G++E
Sbjct: 966 AAIAQAVLHHVVAETRCLTLFITHYQNLARVADGLDGLTNVHM----KFKADTGPDGEEE 1021
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ FLY + G SYGL VA +A +P+KV++ A+ + AM+ +
Sbjct: 1022 ITFLYEVGEGVAHRSYGLNVARLAHIPKKVIDVAAERSSAMESEM 1066
Score = 70.9 bits (172), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 105/433 (24%), Positives = 168/433 (38%), Gaps = 84/433 (19%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLSGVGKCR 324
Q+ ++K +++D +L +VG + + DA + KEL D + + + +
Sbjct: 197 QFLDIKRKHLDTILIVEVGYKFRFFGEDARVAAKELSIVCIPGKMRYDEHPSEAHLDRFA 256
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAK-ARHTNSVISRKLVNVVTPSTTVD 383
I + +LVA G+KVG + Q+ET+ K + N+ +RKL N+ T T +D
Sbjct: 257 SASIPVHRLPVHARRLVAAGHKVGVVRQVETAALKKVGDNRNAPFTRKLTNLYTKGTYID 316
Query: 384 -----------GTIGPDAVHLLAIKEGN---CGPDNGSVVYGFAFVDCAALRVWVGTIND 429
G +LL + E G D V G V A + T D
Sbjct: 317 ENGDLEQSTQGGNTSSSGGYLLCLTESKAKGAGTDE-KVDVGILAVQPATGDIIYDTFED 375
Query: 430 DASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA-----------LELTPA 478
+ + L+ +SP E + G +A L + AGS+ + TP
Sbjct: 376 GFMRSEIETRLLHISPCEFVIV--GDLTKATDKLIQHLAGSSTNVFGDRSRVERVPRTPT 433
Query: 479 MA------VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS-ALGGLISHL 531
MA VT F +K+ + N S+ LE V++ + L +++HL
Sbjct: 434 MAAEAASHVTQFY----AEKMKEATSSQNEQSASL---LEKVLRLPEAVTICLSAMMTHL 486
Query: 532 SRLMLDDV----------------LRNGDIL-PYKVYRDCL-RMDGQTLY--LDSCVTSS 571
+ L+ + L NG L +VYR+ + +L+ +D +T
Sbjct: 487 TEYGLEHIFDLTKYFESFSTRAHMLVNGTTLESLEVYRNATDHAERGSLFWAIDKTLTRF 546
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
G+RLLR W+ PL + RL V+ L V LERLL K R
Sbjct: 547 GRRLLRKWLGRPLLHQADLEARLVAVKELHDKRSTAAVGG--------LERLLA--KTRT 596
Query: 632 QASSCIVLPLIGK 644
C+V GK
Sbjct: 597 DLERCLVRIYYGK 609
>gi|187956273|gb|AAI50760.1| MutS homolog 3 (E. coli) [Mus musculus]
Length = 1095
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 164/311 (52%), Gaps = 29/311 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D +AE L L E F E + + ++ +D + S A A G RP + + K
Sbjct: 758 VLDCNAEWLGFL-ENFGEHYHTLCKAVDHLATVDCIFSLAKVAK--QGNYCRPTLQEEKK 814
Query: 779 NPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
+ IK HP LGE VPN L +DS+ R +++TGPNM
Sbjct: 815 ------------IIIKNGRHPMIDVLLGEQDQF-VPNSTSLSQDSE----RVMIITGPNM 857
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKS+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+T
Sbjct: 858 GGKSSYIKQVALVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDT 917
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A ++++A+ SLVILDELGRGTST DG AIAYA + + LF THY P+ +
Sbjct: 918 AEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 977
Query: 956 SHP-HVTLQHMACAFKSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVP 1009
+P V HM + GD E + FLY++T G SYGL VA +A VP
Sbjct: 978 CYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVP 1037
Query: 1010 QKVVEAASHAA 1020
++V++ A+H +
Sbjct: 1038 REVLQKAAHKS 1048
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 170/396 (42%), Gaps = 56/396 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY ++K Q+ D +L + G Y + DAEI +EL+ L I +
Sbjct: 193 QYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLD--HNFMTASIPTHRLFV 250
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----D 389
V +LVA+GYKVG ++Q ET+ +A + +SV SRKL + T ST + + P D
Sbjct: 251 HVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNPLIRLDD 310
Query: 390 AV------------HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
+V +LL I KE G++ G V A V D AS
Sbjct: 311 SVNIDEVMTDISTNYLLCIYEEKENIKDKKKGNLSVGVVGVQPATGEVVFDCFQDSASRL 370
Query: 435 ALGALLMQVSPKEVIYEN------RGLCKEAQKA------LRKFSAGSAALELTPAM-AV 481
L + + P E++ + L + A +R + E + A V
Sbjct: 371 ELETRISSLQPVELLLPSDLSVPTEMLIQRATNVSVRDDRIRVERMNNTYFEYSHAFQTV 430
Query: 482 TDFLDASEV---KKLVQLNGYFNGSSSPWSKALENVMQHDIGFS---------ALGGLIS 529
T+F A E+ + L+G N P AL V+++ F+ + L S
Sbjct: 431 TEFY-AREIVDSQGSQSLSGVIN-LEKPVICALAAVIRYLKEFNLEKMLSKPESFKQLSS 488
Query: 530 HLSRLMLD-DVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDV 587
+ + ++ LRN +IL + ++ G L+ LD TS G+R L++W+ PL +
Sbjct: 489 GMEFMRINGTTLRNLEILQNQTD---MKTKGSLLWVLDHTKTSFGRRKLKNWVTQPLLKL 545
Query: 588 EGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
IN RLD V + L S V + LRKLPD+ER
Sbjct: 546 REINARLDAVSDVLHSESSVFEQIENLLRKLPDVER 581
>gi|395243133|ref|ZP_10420120.1| DNA mismatch repair protein mutS [Lactobacillus hominis CRBIP 24.179]
gi|394484363|emb|CCI81128.1| DNA mismatch repair protein mutS [Lactobacillus hominis CRBIP 24.179]
Length = 860
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/383 (32%), Positives = 203/383 (53%), Gaps = 44/383 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHA-------ISCIDVLRSFAVTAS 762
P+ + H+ L+AE+ S +E +F++ + I A I+ +DVL +F+ +
Sbjct: 496 PELKEHEALILEAESRSTDLEYDIFVKLREDVKKYIPALQKLAKQIASLDVLTAFSTVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSD 821
++ RP + S + + NG HP + G +PNDI + + +D
Sbjct: 556 QNNYV--RPTM--TSDDNEINVVNG---------RHPVVEQVMSAGSFIPNDIKMTKGTD 602
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
L+TGPNM GKST +R L I+AQ+GCFVP + L + D IFTR+GA D +
Sbjct: 603 -----IFLITGPNMSGKSTYMRQMALIAIMAQVGCFVPADSATLPIFDQIFTRIGAADDL 657
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+ + L +++ +
Sbjct: 658 ISGQSTFMVEMSEANEALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKT 717
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LFATHYH LT TL+H+ +E K L+FL+++ G +SYG+
Sbjct: 718 LFATHYHELTD-----LDQTLEHLENIHVGATEENGK----LIFLHKILPGPADQSYGIH 768
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIGESFK-SSEQRSEFSSLHEEWLKTIVNVSRVDCN 1060
VA +AG+P+KV+ A+ ++K S + +SEQ F+ + + + +
Sbjct: 769 VAQLAGLPRKVLREANTMLHRLEKQGAGSLQPASEQLDLFNE------PEVADSEQDSIS 822
Query: 1061 SDDDDAYDTLFCLWHELKNSYQL 1083
SD+ D D + L+ K Q+
Sbjct: 823 SDEKDVLDAIQNLYLADKTPLQI 845
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 168/377 (44%), Gaps = 47/377 (12%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K + KQY+ +K QY D LF++VG FYEL+E DA G + L+ +T K +
Sbjct: 2 AAKDTTPMMKQYYEIKQQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRS-NKTKN 60
Query: 326 ----VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +D V LV +GYKV EQLE ++AK ++ R ++ +VTP T
Sbjct: 61 PIPMAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAKG-----MVKRGIIQLVTPGTM 115
Query: 382 VDGT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
++ D +L ++ G +GFA+ D + + + D A+
Sbjct: 116 MEQRPDQAKDTNYLTSVVSTASG-------FGFAYSDLSTGETFATHLKD---WEAVANE 165
Query: 440 LMQVSPKEVIY------ENRGLCKEAQKALR---KFSAGSAALELTPAMAVTDFLDASEV 490
L+ + +EV++ +N+ ++A + K A + + V +++EV
Sbjct: 166 LLSLQTREVVFDGPLSVQNKDFLQKANITVSNPVKLDEEHAEI----SYVVQKLSNSAEV 221
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
K QL Y S+ S A V Q L +SH+ + L ++++N
Sbjct: 222 KAAKQLVSYL-LSTQKRSLAHLQVAQSYEPTQYLQ--MSHVVQTNL-ELIKNA------- 270
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
+ +M LD T+ G RLL+SWI PL I R D+V+ L + V
Sbjct: 271 -KTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLLSSSEIKKRQDMVQALFDDYFTRENV 329
Query: 611 AQYLRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 330 IDSLKGVYDLERLTGRI 346
>gi|392587833|gb|EIW77166.1| DNA mismatch repair protein [Coniophora puteana RWD-64-598 SS2]
Length = 960
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 32/341 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L++ + AS ++ V+ ++ + DV+ SFA H + P+ + +
Sbjct: 598 LVKEVVSIASTYTPVLESLDMVLAHLDVITSFA----------HVSMNAPEPYVKPIVSE 647
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G L +K HP ++ +PND+ + +D + L ++TGPNMGGKST +R
Sbjct: 648 KGASGLVLKDARHPCLEVQDDISFIPNDVEMAKDEGEFL----IITGPNMGGKSTYIRQV 703
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC + + D+I R+GA D + G STF+ E ETAS+L+ A++D
Sbjct: 704 GVIALMAQIGCFVPCSEARMPIFDSILCRVGAGDNQLKGVSTFMAEMLETASILRSASKD 763
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ + I +FATH+H LT HV H+
Sbjct: 764 SLIIIDELGRGTSTYDGFGLAWAISEHIASEIRAFCMFATHFHELTALDQELKHVKNLHV 823
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
A S S DQ++ LY++ G +S+G+ VA +A P+ VV+ A A +
Sbjct: 824 -VAHVSQEAQSSTQDQDITLLYKVEPGVSDQSFGIHVARLANFPENVVKLAKRKADEL-- 880
Query: 1026 SIGESFKSSEQRSEFS--------SLHEEWLKTIVNVSRVD 1058
E F ++ +FS L EE L+ + S+ D
Sbjct: 881 ---EDFNTTRTDQQFSEEVTQQGVELVEELLRKFASSSKQD 918
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 37/137 (27%)
Query: 522 SALGGLISHLSRLMLDD------VLRNGDILPYKVYRDCLRMDGQTL------------- 562
+ALG LIS+L L D +LR D+ Y +R+D L
Sbjct: 284 AALGALISYLG-LASDPANEGAYILRTHDLARY------MRLDASALRALNLTEVPGSGG 336
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA- 611
L+ C T+ G RLL +W+ PL ++ I R ++VE + ++ +
Sbjct: 337 SINKNATLLGLLNKCKTAQGTRLLGTWLKQPLVNLHEIRQRQNLVEVFVNDANGRRTLQD 396
Query: 612 QYLRKLPDLERLLGRVK 628
+YL+ +PD+ R+ R K
Sbjct: 397 EYLKYMPDMHRISKRFK 413
>gi|336391647|ref|ZP_08573046.1| DNA mismatch repair protein MutS [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 885
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 42/318 (13%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTAS 762
P+ + + L+A+ S +E LF Q + IH ++ +DVL+SFAV +
Sbjct: 501 PELKEKETLILEAQEKSTALEYDLFTAVREQVKQQIHRLQRLAKGVAALDVLQSFAVVSE 560
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGED 819
RP + L+I HP LGE +PND+ + D
Sbjct: 561 TYHYV--RPTLTKAHD------------LEIVAGRHPVVEKVLGEQKY--IPNDVTM--D 602
Query: 820 SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD 879
+D+ + LL+TGPNM GKST +R L VI+AQ+GCF+P L + D IFTR+GA D
Sbjct: 603 ADNTI---LLITGPNMSGKSTYMRQLALTVIMAQIGCFIPATKATLPIFDQIFTRIGAAD 659
Query: 880 RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939
+++G+STF+VE E+ + L AT++SL++ DE+GRGT+T+DG A+A A+ L + ++
Sbjct: 660 DLISGQSTFMVEMMESNTALAHATENSLILFDEIGRGTATYDGMALAQAIIEYLHDHVHA 719
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LF+THYH LT PH+ H+ ++ + LVFL+++ +GA +SYG
Sbjct: 720 KTLFSTHYHELTALDTDLPHLRNVHVGAVEENGT---------LVFLHKMMAGAADKSYG 770
Query: 1000 LQVAVMAGVPQKVVEAAS 1017
+ VA +AG+P ++ A+
Sbjct: 771 IHVAKLAGLPDSLLTRAT 788
Score = 83.2 bits (204), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 160/382 (41%), Gaps = 53/382 (13%)
Query: 268 KKMSASQK--------QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL-- 317
KK++ QK QY +K Y D LF+++G FYEL+ DA G + L+ +T
Sbjct: 1 KKLNVPQKTKETPMMAQYNAIKKDYPDAFLFYRIGDFYELFYDDAIKGAQLLELTLTARN 60
Query: 318 -SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVV 376
S G+ + ++ LV +GYKV EQ+E R ++ R+++ +V
Sbjct: 61 KSATDPIPMCGVPHHAAQNYIDILVDKGYKVAICEQVE-----DPRTAVGMVKREVIQLV 115
Query: 377 TPSTTVD--GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
TP T ++ +L A+ E YGFA+ D + + V + A
Sbjct: 116 TPGTIMEQKAATAKSNNYLTALVETKKDQ------YGFAYTDLSTGELKVSRL---AGAD 166
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL-----DASE 489
A+ +M + KE++ N + + L K + + A F+ D +E
Sbjct: 167 AVVNEVMSLRTKELV-ANHEVTPQILTNLTKLGVLISYQDQVDPRAELSFVTQGLADLTE 225
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIG-FSALGGLISHLSR--LMLDDVLRNGDIL 546
VK + QL Y + L+ +++ F + H ++ L L +R G
Sbjct: 226 VKVVEQLLMYLTVTQKRSLAHLQVAEEYEPSEFLKM----DHYAKKNLELTTSIRTG--- 278
Query: 547 PYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
+ G L+ LD+ T+ G RLL+ W+ PL + I R D V LM +
Sbjct: 279 ---------QRSGTLLWLLDATKTAMGGRLLKQWLDRPLINATQIKQRQDKVASLMDHFF 329
Query: 606 VVMVVAQYLRKLPDLERLLGRV 627
+ L K+ DLERL GRV
Sbjct: 330 ERSSLQDELTKVYDLERLAGRV 351
>gi|189193719|ref|XP_001933198.1| DNA mismatch repair protein MSH3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978762|gb|EDU45388.1| DNA mismatch repair protein MSH3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1133
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 140/237 (59%), Gaps = 9/237 (3%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L I G HP VPND+ L DS R LL+TGPNMGGKS+ +R+ L I
Sbjct: 872 LNITGGRHPMVEQLLLNNYVPNDLSLSHDS----TRALLITGPNMGGKSSYVRSAALIAI 927
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+ Q+G +VP L + D +FTR+GA D ++ GESTF+VE ET+ +L+ AT SL+IL
Sbjct: 928 MGQIGSYVPATNARLGMLDAVFTRMGAFDNMLKGESTFMVELNETSDILKSATPRSLIIL 987
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTSTFDG AIA AV ++ + LF THY L K P L+++ F+
Sbjct: 988 DELGRGTSTFDGVAIAEAVLDYVIRDLQSLTLFITHYQHLAKLTTRFPAGELKNVHMRFE 1047
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ G +E+VFLY T G SYGL VA +A VP+KV++ A + +++S+
Sbjct: 1048 EQN-----GGKEVVFLYEATEGISHRSYGLNVARLARVPEKVIDVAEVKSADLEESM 1099
Score = 63.2 bits (152), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 96/429 (22%), Positives = 166/429 (38%), Gaps = 82/429 (19%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + QY ++K +++D ++ +VG Y+ + DA KEL D +
Sbjct: 225 KLTPMEIQYLDIKRKHLDTVVIVEVGYKYKFFGEDARTASKELGIVCIPGKFRYDEHPSE 284
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + + V++L+ +KVG + Q+ET+ +A + N+ RKL N+
Sbjct: 285 AHLDRFASASFPTHRLQVHVKRLIQANHKVGVVRQVETAALKAAGTNRNTPFVRKLTNLY 344
Query: 377 TPSTTVDGTIG---PDA---------VHLLAIKEGNC---GPDNGSVVYGFAFVDCAALR 421
T T VD G P A +LL I E N G D V G V A
Sbjct: 345 TKGTYVDDIEGLETPTAGSGAGAQSTGYLLCITESNAKGWGTDE-KVQVGLIAVQPATGD 403
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAV 481
+ D + + L+ ++P E + L K K ++ SA +
Sbjct: 404 IIYDDFEDGFLRSEIETRLLHIAPAEFLVVG-DLSKATDKLIQHLSASKTNV-------- 454
Query: 482 TDFLDASEVKKLVQ-----------LNGYFNGS--------SSPWSKALENVMQHDIGFS 522
F D S V+++ + ++ ++ G S L+ V Q +
Sbjct: 455 --FGDRSRVERVEKPKTMAAQAYSHISNFYAGKMKSSQENDSDKQGAILDKVHQLSEHVT 512
Query: 523 -ALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------------------- 562
L +I++LS L+ V R + ++G TL
Sbjct: 513 ICLSAMITYLSEYGLEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDFTSKGSLF 572
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP- 618
++ T G+RLLR W+ PL D + R+ VE L + + V + L K+
Sbjct: 573 WTMNRTKTRFGQRLLRKWVGRPLIDKSKLEERIAAVEELKEGENTIPVDKLKFMLGKIKT 632
Query: 619 DLERLLGRV 627
DLE++L R+
Sbjct: 633 DLEKVLIRI 641
>gi|449108419|ref|ZP_21745062.1| DNA mismatch repair protein mutS [Treponema denticola ATCC 33520]
gi|448961500|gb|EMB42201.1| DNA mismatch repair protein mutS [Treponema denticola ATCC 33520]
Length = 884
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 159/279 (56%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 555 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNITGGRHPVV--ENHL 599
Query: 806 -GGLPVPNDILL--GEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE+S D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 600 RAGDFVPNSIKLLSGENSNSEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 659
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 660 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 719
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ H + + + +
Sbjct: 720 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR--LEHEKIINLKL---------DVLEA 768
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 769 EGKIVFLKKVVPGAAGNSYGIHVAGLAGIPQSVLTRAEN 807
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 160/384 (41%), Gaps = 56/384 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ GI
Sbjct: 3 RQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCGIPYHAAK 60
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G K+ EQ + RK+V V+TP T D + + +
Sbjct: 61 IYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFLEQGSNNY 114
Query: 394 LAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
LA EGN G D G A++D + + + +++PK
Sbjct: 115 LAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKEIGRINPK 171
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV------Q 495
E++ + Q +F A L P+M + D S K+L
Sbjct: 172 EILIQ--------QSIQSEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTEN 223
Query: 496 LNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR-NGDILP 547
L G+ + SP + LE + DI + + + + LDD R N ++L
Sbjct: 224 LKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTRKNLELLT 283
Query: 548 YKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
LR + + L V T+ G RLLR I +PL+ + I+ RLD V L K+
Sbjct: 284 ------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKKEIDKRLDKVNSLFKD 337
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+ ++ + L + D+ERL GR+
Sbjct: 338 GKASAIIRETLSSILDIERLSGRI 361
>gi|68299763|ref|NP_034959.2| DNA mismatch repair protein Msh3 [Mus musculus]
Length = 1095
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 164/311 (52%), Gaps = 29/311 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D +AE L L E F E + + ++ +D + S A A G RP + + K
Sbjct: 758 VLDCNAEWLGFL-ENFGEHYHTLCKAVDHLATVDCIFSLAKVAK--QGNYCRPTLQEEKK 814
Query: 779 NPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
+ IK HP LGE VPN L +DS+ R +++TGPNM
Sbjct: 815 ------------IIIKNGRHPMIDVLLGEQDQF-VPNSTSLSQDSE----RVMIITGPNM 857
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKS+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+T
Sbjct: 858 GGKSSYIKQVALVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDT 917
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A ++++A+ SLVILDELGRGTST DG AIAYA + + LF THY P+ +
Sbjct: 918 AEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 977
Query: 956 SHP-HVTLQHMACAFKSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVP 1009
+P V HM + GD E + FLY++T G SYGL VA +A VP
Sbjct: 978 CYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVP 1037
Query: 1010 QKVVEAASHAA 1020
++V++ A+H +
Sbjct: 1038 REVLQKAAHKS 1048
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 170/396 (42%), Gaps = 56/396 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY ++K Q+ D +L + G Y + DAEI +EL+ L I +
Sbjct: 193 QYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLD--HNFMTASIPTHRLFV 250
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----D 389
V +LVA+GYKVG ++Q ET+ +A + +SV SRKL + T ST + + P D
Sbjct: 251 HVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNPLIRLDD 310
Query: 390 AV------------HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
+V +LL I KE G++ G V A V D AS
Sbjct: 311 SVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNLSVGIVGVQPATGEVVFDCFQDSASRL 370
Query: 435 ALGALLMQVSPKEVIYEN------RGLCKEAQKA------LRKFSAGSAALELTPAM-AV 481
L + + P E++ + L + A +R + E + A V
Sbjct: 371 ELETRISSLQPVELLLPSDLSVPTEMLIQRATNVSVRDDRIRVERMNNTYFEYSHAFQTV 430
Query: 482 TDFLDASEV---KKLVQLNGYFNGSSSPWSKALENVMQHDIGFS---------ALGGLIS 529
T+F A E+ + L+G N P AL V+++ F+ + L S
Sbjct: 431 TEFY-AREIVDSQGSQSLSGVIN-LEKPVICALAAVIRYLKEFNLEKMLSKPESFKQLSS 488
Query: 530 HLSRLMLD-DVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDV 587
+ + ++ LRN +IL + ++ G L+ LD TS G+R L++W+ PL +
Sbjct: 489 GMEFMRINGTTLRNLEILQNQTD---MKTKGSLLWVLDHTKTSFGRRKLKNWVTQPLLKL 545
Query: 588 EGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
IN RLD V + L S V + LRKLPD+ER
Sbjct: 546 REINARLDAVSDVLHSESSVFEQIENLLRKLPDVER 581
>gi|420145752|ref|ZP_14653206.1| DNA mismatch repair protein MutS [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402601|gb|EJN55922.1| DNA mismatch repair protein MutS [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 881
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 112/318 (35%), Positives = 176/318 (55%), Gaps = 42/318 (13%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTAS 762
P+ + + L+A+ S +E LF Q + IH ++ +DVL+SFAV +
Sbjct: 497 PELKEKETLILEAQEKSTALEYDLFTAVREQVKQQIHRLQRLAKGVAALDVLQSFAVVSE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGED 819
RP + L+I HP LGE +PND+ + D
Sbjct: 557 TYHYV--RPTLTKAHD------------LEIVAGRHPVVEKVLGEQKY--IPNDVTM--D 598
Query: 820 SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD 879
+D+ + LL+TGPNM GKST +R L VI+AQ+GCF+P L + D IFTR+GA D
Sbjct: 599 ADNTI---LLITGPNMSGKSTYMRQLALTVIMAQIGCFIPATKATLPIFDQIFTRIGAAD 655
Query: 880 RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939
+++G+STF+VE E+ + L AT++SL++ DE+GRGT+T+DG A+A A+ L + ++
Sbjct: 656 DLISGQSTFMVEMMESNTALAHATENSLILFDEIGRGTATYDGMALAQAIIEYLHDHVHA 715
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
+ LF+THYH LT PH+ H+ ++ + LVFL+++ +GA +SYG
Sbjct: 716 KTLFSTHYHELTALDTDLPHLRNVHVGAVEENGT---------LVFLHKMMAGAADKSYG 766
Query: 1000 LQVAVMAGVPQKVVEAAS 1017
+ VA +AG+P ++ A+
Sbjct: 767 IHVAKLAGLPDSLLTRAT 784
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 152/364 (41%), Gaps = 41/364 (11%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISESG 332
QY +K Y D LF+++G FYEL+ DA G + L+ +T S G+
Sbjct: 13 QYNAIKKDYPDAFLFYRIGDFYELFYDDAIKGAQLLELTLTARNKSATDPIPMCGVPHHA 72
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPDA 390
+ ++ LV +GYKV EQ+E R ++ R+++ +VTP T ++
Sbjct: 73 AQNYIDILVDKGYKVAICEQVE-----DPRTAVGMVKREVIQLVTPGTIMEQKAATAKSN 127
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+L A+ E YGFA+ D + + V + A A+ +M + KE++
Sbjct: 128 NYLTALVETKKDQ------YGFAYTDLSTGELKVSRL---AGADAVVNEVMSLRTKELV- 177
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL-----DASEVKKLVQLNGYFNGSSS 505
N + + L K + + A F+ D +EVK + QL Y +
Sbjct: 178 ANHEVTPQILTNLTKLGVLISYQDQVDPRAELSFVTQGLADLTEVKVVEQLLMYLTVTQK 237
Query: 506 PWSKALENVMQHDIG-FSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYL 564
L+ +++ F + S L L +R G + G L+L
Sbjct: 238 RSLAHLQVAEEYEPSEFLKMDHYAK--SNLELTSSIRTG------------QRSGTLLWL 283
Query: 565 -DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
D+ T+ G RLL+ W+ PL + I R D V LM + + L K+ DLERL
Sbjct: 284 LDATKTAMGGRLLKQWLDRPLINAMQIKQRQDKVASLMDHFFERSSLQDELTKVYDLERL 343
Query: 624 LGRV 627
GRV
Sbjct: 344 AGRV 347
>gi|307564801|ref|ZP_07627329.1| DNA mismatch repair protein MutS [Prevotella amnii CRIS 21A-A]
gi|307346523|gb|EFN91832.1| DNA mismatch repair protein MutS [Prevotella amnii CRIS 21A-A]
Length = 887
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 177/331 (53%), Gaps = 45/331 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVI-------HAISCID 752
L Q E I + +Y+ + D L + +LF+E + E I + I+ +D
Sbjct: 510 LAQAERYITQELKEYE-EKILGADERILILENKLFLELINDMQEFIPQIQINANLIAHLD 568
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP-----FALGENGG 807
+ SF T+ + RP++ + +L IK HP LGE
Sbjct: 569 CIFSFYYTSKEHNYI--RPIV------------DDSNILNIKQGRHPVIETQLPLGEQ-- 612
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+PND+LL D + +++TGPNM GKS LLR T L V+LAQ+GCFVP E + +
Sbjct: 613 -YIPNDVLLNNDDQ----QIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPAESATIGV 667
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I GESTF+VE TE +++L T SLV+ DELGRGTST+DG +IA+
Sbjct: 668 VDKIFTRVGASDNISLGESTFMVEMTEASNILNNVTPHSLVLFDELGRGTSTYDGISIAW 727
Query: 928 AVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+ L E R R LFATHYH L E + H K+ + + + + +++F
Sbjct: 728 AIVEYLHEQPRAKARTLFATHYHELN-EMEKNFH--------GIKNYNVSVKEVNGKIIF 778
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
L +L G S+G+ VA +AG+P+ +V+ A
Sbjct: 779 LRKLEKGGSEHSFGIHVADIAGMPRSIVKRA 809
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 59/392 (15%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL----SGVGKC 323
K M+ KQ++++K+++ D LL F+ G FYE Y DA K L +T +G
Sbjct: 6 KGMTPMMKQFFSMKAKHPDALLLFRCGDFYETYHDDAIDAAKILGITLTKRNNSAGCSDI 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLE----TSEQAKARH----TNSVISRKLVNV 375
G +D + KL+ G +V +QLE E+ K + + ++ R + +
Sbjct: 66 AMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREEIKGKKGLSPMDKMVKRGITEL 125
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
VTP + + L KE N G G +F+D + + + +
Sbjct: 126 VTPGVALTDNV-------LNYKENNFLAAVHFGKQACGISFLDISTGEF----LTSEGTY 174
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
+ L+ SPKE++Y+ CK+ + + F E+ + F + + +KL
Sbjct: 175 DYVKKLIGSFSPKEILYDRT--CKKDFE--QNFGTKLCCFEMDDWV----FTEQNANQKL 226
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
++ +F +++ ++++ H+ G A G ++ +L L +R+ L
Sbjct: 227 LK---HF-ATTNLKGFGVDHL--HN-GIIAAGAIMQYLE-LTQHTQIRHITALTRIEEEK 278
Query: 554 CLRMDGQTL------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
+RMD T+ +D +T G R+LR W+ PLK V+ I RLD
Sbjct: 279 YVRMDRFTIRSLELISTINEEGTSLLNVIDHTITPMGGRMLRRWVVFPLKTVKTIEERLD 338
Query: 596 VVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+V+Y K + + ++ DLER++ +V
Sbjct: 339 IVDYFFKQQNFCETIQEQFHRIGDLERIISKV 370
>gi|149185440|ref|ZP_01863756.1| DNA mismatch repair ATPase [Erythrobacter sp. SD-21]
gi|148830660|gb|EDL49095.1| DNA mismatch repair ATPase [Erythrobacter sp. SD-21]
Length = 874
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 121/283 (42%), Positives = 159/283 (56%), Gaps = 31/283 (10%)
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGG 807
IDV S A+ G RP IL + P L++ G HP AL + G
Sbjct: 560 IDV--SAALAERAVEGDWARPAILHE------------PCLEVTGGRHPVVEQALAKTGE 605
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V ND LG SDD R L+ GPNMGGKST LR L ++LAQ G FVP + L
Sbjct: 606 RFVANDCSLG--SDD---RLWLIGGPNMGGKSTFLRQNALIMLLAQAGSFVPATAARIGL 660
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
AD +F+R+GA+D + G STF+VE ETA++L +AT S VILDE+GRGTST+DG A+A+
Sbjct: 661 ADRLFSRVGASDNLARGRSTFMVEMVETAAILSQATDRSFVILDEVGRGTSTYDGMALAW 720
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E++ CR LFATHYH L++ + ++L H+ KGD LV L+
Sbjct: 721 AVVEAVHEQLKCRCLFATHYHELSRLADTCDALSLHHVRA-------REWKGD--LVLLH 771
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGES 1030
L GA SYGL VA +AGVP V++ A ++K E+
Sbjct: 772 ELAKGAADRSYGLSVAKLAGVPPPVIKRAKAVLDKLEKGRAET 814
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 159/392 (40%), Gaps = 66/392 (16%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY +K + + LLF+++G F+EL+ DA+ + LD +T G V
Sbjct: 4 KPTPMMQQYLALKEEAGEALLFYRMGDFFELFFDDAKRAAQVLDIALTTRGEHGGAPVPM 63
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH-------TNSVISRKLVNVVTP 378
G+ + + +L+ G +V EQ ET ++AK R + +++SR +V VT
Sbjct: 64 CGVPVHSAEGYLARLIKGGCRVAIAEQTETPDEAKERTKREGKPVSKALVSRDIVRFVTA 123
Query: 379 ST-TVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWV---GTINDDASCA 434
T T + + P +LL P V G A D + R+ + G DA+ A
Sbjct: 124 GTLTEEALLEPRRANLLV----AVAPVRDGV--GIAACDISTGRLELEECGPERLDAALA 177
Query: 435 ALGALLM------QVSPKEVIYENR-GLCKEAQKALRKFSAGSAALE---------LTPA 478
LGA + + +P + I R E +A K G A LE L A
Sbjct: 178 RLGASEVVGPDDWEDAPFDTISRPRHDFRSEDGEARLKALHGLATLEGLGDFSRPMLAAA 237
Query: 479 MAVTDFLDASEVKKL-VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD 537
+ +LD + KL L GS + + +I + GG
Sbjct: 238 AGLIAYLDHAGRGKLPFLLPPVARGSGAHLAMDAATRSSLEILAAQNGG----------- 286
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
R G ++ C+ D C T +G R L + PL D+ I RL V
Sbjct: 287 ---REGSLIA------CI---------DRCATGAGARQLAEDLSAPLADLAAIEMRLASV 328
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
++ ++ + + LR+ PD+ R LGR+ A
Sbjct: 329 QHFHEDPLLRADLRAVLRQAPDIGRALGRLVA 360
>gi|430836453|ref|ZP_19454433.1| DNA mismatch repair protein mutS [Enterococcus faecium E0680]
gi|431380434|ref|ZP_19510815.1| DNA mismatch repair protein mutS [Enterococcus faecium E1627]
gi|431506813|ref|ZP_19515639.1| DNA mismatch repair protein mutS [Enterococcus faecium E1634]
gi|430488413|gb|ELA65092.1| DNA mismatch repair protein mutS [Enterococcus faecium E0680]
gi|430582302|gb|ELB20729.1| DNA mismatch repair protein mutS [Enterococcus faecium E1627]
gi|430587200|gb|ELB25433.1| DNA mismatch repair protein mutS [Enterococcus faecium E1634]
Length = 881
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|392949281|ref|ZP_10314866.1| DNA mismatch repair protein MutS/HexA [Lactobacillus pentosus KCA1]
gi|392435490|gb|EIW13429.1| DNA mismatch repair protein MutS/HexA [Lactobacillus pentosus KCA1]
Length = 912
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 38/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + H+ L+AE+ S +E LF ++KA Q + + A++ IDVL+SFAV +
Sbjct: 496 PELKEHESLILEAESHSTDLEYQLFTTVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
P + D+ LKI HP G VPND+ + D
Sbjct: 556 DYHFV-----------RPTLTNDHD---LKIVDGRHPVVEKVMGNQSYVPNDVTMAPDE- 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VI+AQ+GCFVP + L + D IFTR+GATD +
Sbjct: 601 ----TVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIFTRIGATDDL 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + LQ AT +SLV+ DE+GRGT+T+DG A+A A+ + I+ +
Sbjct: 657 ISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEFVHNHIHAKT 716
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ + ELVFL+++ GA +SYG+
Sbjct: 717 LFSTHYHELT---------ALDQELSGLRNVHVGATEQNGELVFLHKVEPGAADKSYGVH 767
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +AG+P ++ A+
Sbjct: 768 VAKLAGMPDSLLTRAN 783
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 166/368 (45%), Gaps = 48/368 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY VK+QY D LF+++G FYE++ DA G + L+ +T S G+
Sbjct: 12 RQYLAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCGVPHR 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT++
Sbjct: 72 AVQNYIDILVDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTTLERGAEQAKS 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
+L A+ + + YGFA+ D + L+ V T N+ AL L + KE
Sbjct: 127 NNYLTALIQVDKQ-------YGFAYADLSTGELKTSVLTTNE-----ALVNELTSLQTKE 174
Query: 448 VIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVT----DFLDASEVKKLVQLNGYFNG 502
++ + + E ++ ++K S ++TP ++ D E + + +L Y
Sbjct: 175 IVV-DESVPAELREQIQKLGILISEQNQVTPQATLSYLTQDLTVELEKQVVERLLMYITV 233
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ L+ + ++ + + H S+ L L +R G + G
Sbjct: 234 TQKRSLAHLQKAVAYEPSYFL---KLDHNSKYNLELMKSIRTG------------KKQGT 278
Query: 561 TLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+ LD T+ G RLL+ WI PL + I R + V L+ + + + L K+ D
Sbjct: 279 LLWLLDETKTAMGGRLLKQWIDRPLIVQDDITTRQNKVAALLDHYFERSNLQEELVKVYD 338
Query: 620 LERLLGRV 627
LERL GRV
Sbjct: 339 LERLAGRV 346
>gi|167040248|ref|YP_001663233.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514]
gi|256750830|ref|ZP_05491715.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914332|ref|ZP_07131648.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561]
gi|307724432|ref|YP_003904183.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513]
gi|166854488|gb|ABY92897.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X514]
gi|256750413|gb|EEU63432.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889267|gb|EFK84413.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X561]
gi|307581493|gb|ADN54892.1| DNA mismatch repair protein MutS [Thermoanaerobacter sp. X513]
Length = 867
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 170/298 (57%), Gaps = 30/298 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ D ++ IK HP +
Sbjct: 552 IAIIDVLISFAEVAE--TNRYIKPIV-----------DYSDRIV-IKEGRHPVIETISDE 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 598 SFVANDIDIGSENP-----IMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGI 652
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L+ AT SL+ILDE+GRGTST+DG +IA+
Sbjct: 653 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTSTYDGMSIAH 712
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL
Sbjct: 713 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHA--ALAMKKSIGESFKSSEQRSEFSSL 1043
++ G +SYG+QV+ +AG+P +VE A +L K+I +++ Q+ F+ +
Sbjct: 764 KIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLENDKAIKSELENASQQLAFTQI 821
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 173/379 (45%), Gaps = 54/379 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KL+ +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKG-----LVKRDVVRIYTPGT----IINPESM 118
Query: 392 ------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+L+++ +G DN YG VD ++ + + + + + +P
Sbjct: 119 DEKTNNYLVSVFKGR---DN----YGICAVDVTTGDLYATELKNCKDTKRVYDEITKYAP 171
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E+I N K K ++ F + A+ + LD E KL++ FN S
Sbjct: 172 SEII-ANEDFLKN-NKYIKIFKNNNCAINIYEKQ-----LDYEEKIKLIETQ--FNKKSE 222
Query: 506 PWSKALENVMQHDIG--FSALGGL----ISHLSRLML----------DDVLRNGDILPYK 549
+ M + + FS L L + H+++L++ + ++N +IL
Sbjct: 223 ELGIKDKPYMANSLAALFSYLQELQKTALKHINKLLIYEDNSYMGLDSNAIKNLEILESN 282
Query: 550 VYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+ G L LD VT G RLL+ W+ PL + E I+ RL VE L + +
Sbjct: 283 KNKS---KKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEELFNDYKNRQ 339
Query: 609 VVAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL ++
Sbjct: 340 DLKQLLNKIYDLERLASKI 358
>gi|210612717|ref|ZP_03289432.1| hypothetical protein CLONEX_01634 [Clostridium nexile DSM 1787]
gi|210151410|gb|EEA82418.1| hypothetical protein CLONEX_01634 [Clostridium nexile DSM 1787]
Length = 875
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 129/361 (35%), Positives = 189/361 (52%), Gaps = 57/361 (15%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+ IDV S A+ A ++ RP I N V+ IK HP
Sbjct: 546 AIAQIDVFASLALVAERNNYV--RPKI------------NEKGVIDIKNGRHPVVEK--- 588
Query: 807 GLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
+PND+ + D+ DD R ++TGPNM GKST +R T L V++AQ+G FVP E
Sbjct: 589 --MIPNDMFIANDTYLDDKKNRVSIITGPNMAGKSTYMRQTALIVLMAQIGSFVPAETAN 646
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
+ + D IFTR+GA+D + +G+STF+VE TE A++L+ AT SL+ILDE+GRGTSTFDG +
Sbjct: 647 IGIVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLS 706
Query: 925 IAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
IA+AV + + + + LFATHYH LT+ V + A K KGD +
Sbjct: 707 IAWAVVEHISNGKLLGAKTLFATHYHELTELEGKIDSV--NNYCIAVK------EKGD-D 757
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS------IGESFKSSEQ 1036
+VFL ++ G +SYG+QVA +AGVP+ V+ A + ++ S +S +
Sbjct: 758 IVFLRKIVKGGADKSYGIQVAKLAGVPESVIARAKEIVSELSEADITTRVRDISVQSGDT 817
Query: 1037 RSEFSSLHEEWLKTIVNVSRVDCNSDDD----------------DAYDTLFCLWHELKNS 1080
+ + E + +S D DDD DA +T++ L ++LKN
Sbjct: 818 KKKMKKYDE---VDLAQMSLFDTVKDDDVLKELEELDVAHLTPMDALNTIYRLQNKLKNR 874
Query: 1081 Y 1081
+
Sbjct: 875 W 875
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 165/388 (42%), Gaps = 72/388 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY K QY D +LF+++G FYE++ DA KELD +T G + G+
Sbjct: 3 QQYMETKEQYKDCILFYRLGDFYEMFFDDALTVTKELDITLTGKNCGLEERAPMCGVPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-----DGTI 386
++ + KLV +GYKV EQ+E + AK ++ R++V +VTP T + D T
Sbjct: 63 AVEGYLTKLVQKGYKVAICEQVEDPKLAKG-----IVKREVVRIVTPGTNINTQALDETK 117
Query: 387 GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
+ ++ I + YG + D + +V ++ S LG + + SP
Sbjct: 118 NNYIMCIVYIADR----------YGLSVADVSTGDYFVTELD---SGRKLGDEIAKFSPS 164
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTD------FLDASEVKKLVQLNGYF 500
E+I C E+ + +G +L + +T + D + K+ L +F
Sbjct: 165 EII------CNESL-----YMSGLDLEDLKNRLGITIYSLDTWYFDDAMCTKV--LKDHF 211
Query: 501 NGSSSPWSKALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL--- 555
SS LE + ++ G A G L+ +L + I+ Y + L
Sbjct: 212 KVSS------LEGLGLTDYNCGLIAAGALLQYLYETQKTSLAHLTGIISYTTGKYMLLDS 265
Query: 556 ---------------RMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+ G L+ LD T+ G R LRS++ PL E + RLD V
Sbjct: 266 SSRRNLELCETLREKQKRGSLLWVLDKTKTAMGARTLRSFVEQPLIHKEEVIKRLDAVGE 325
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L ++ + +YL + DLERL+ ++
Sbjct: 326 LKDDAISREEIREYLTPVYDLERLISKI 353
>gi|430823355|ref|ZP_19441926.1| DNA mismatch repair protein mutS [Enterococcus faecium E0120]
gi|430866387|ref|ZP_19481664.1| DNA mismatch repair protein mutS [Enterococcus faecium E1574]
gi|430442068|gb|ELA52116.1| DNA mismatch repair protein mutS [Enterococcus faecium E0120]
gi|430551615|gb|ELA91366.1| DNA mismatch repair protein mutS [Enterococcus faecium E1574]
Length = 881
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|359428288|ref|ZP_09219324.1| DNA mismatch repair protein MutS [Acinetobacter sp. NBRC 100985]
gi|358236304|dbj|GAB00863.1| DNA mismatch repair protein MutS [Acinetobacter sp. NBRC 100985]
Length = 879
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 173/320 (54%), Gaps = 38/320 (11%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+ ID+L +FA A +++ A RP P++ +KI+ HP N
Sbjct: 561 AIANIDILANFAHQARLNNWA--RPEFTPETG------------IKIQAGRHPVVEALNK 606
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
PND L D R ++TGPNMGGKST +R T L +LA G FVP + L
Sbjct: 607 APFTPNDTFL-----DTQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAKSAKLG 661
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV++DE+GRGTST+DG ++A
Sbjct: 662 SIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLSLA 721
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE---- 982
+A L +R+ C LFATHY LT E S ++ +NY QE
Sbjct: 722 WACVVDLTKRVKCLCLFATHYFELT-ELGS-------------EAGIDNYHVTAQELNGN 767
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSS 1042
L+ L+++ G +S+GLQVA +AG+P V++ A ++K + ++S Q FS+
Sbjct: 768 LILLHKVQHGPASQSHGLQVAKLAGIPANVIKEAQKRLKILEKQQHQHLQNSVQNDLFSA 827
Query: 1043 L-HEEWLKTIVNVSRVDCNS 1061
+ HE + + + ++ S
Sbjct: 828 VEHEIETQVVERIVEIEAQS 847
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 165/388 (42%), Gaps = 60/388 (15%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L ++ +QY VK Y LLF+++G FYEL+ DA K L ITL+ GK
Sbjct: 10 LSSLTPMMQQYTTVKMDYPHALLFYRMGDFYELFFDDAHQAAKLLG--ITLTHRGKANGE 67
Query: 327 GISESGID-DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
I +G+ A E +AR K GR + EQ + RK+V ++TP T D
Sbjct: 68 PIPMAGVPYHAAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDA 125
Query: 386 I--GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ + +L+A+ C N GFA +D +A V N L L ++
Sbjct: 126 LLTSYQSSNLVAL----CIQQNQ---IGFALLDLSAGIFKVQQQN--YKPEQLSIELARL 176
Query: 444 SPKEVIYE----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF------ 484
P E++ + ++ + ++ +K L F+ +A L ++V+
Sbjct: 177 MPSEILIDEDLVDQNIIEQIKKNLDCPVTKRPNVDFNLNNAQKTLCDQLSVSTLSGFGLD 236
Query: 485 ---LDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
L + L+ ++ P ++++ ++ F AL + R
Sbjct: 237 PYPLAKAAAAALIHYAKETQKTALPHIRSIQ--IEQSTDFIALDPITR-----------R 283
Query: 542 NGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
N +I+ + L G +L+ ++ C T+ G RLL + PL+D ++ RLD E
Sbjct: 284 NLEII------EPLFEHGTSLFQLINDCQTAMGGRLLSRTLMQPLRDTAILDARLDATEQ 337
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L+K V L+++ D+ER+L RV
Sbjct: 338 LLKGYHEA-PVRLVLKEIGDIERVLSRV 364
>gi|449124628|ref|ZP_21760947.1| DNA mismatch repair protein mutS [Treponema denticola OTK]
gi|448942959|gb|EMB23853.1| DNA mismatch repair protein mutS [Treponema denticola OTK]
Length = 887
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 168/303 (55%), Gaps = 35/303 (11%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 555 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNITGGRHPVV--ENHL 599
Query: 806 -GGLPVPNDI--LLGEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE++ D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 600 RAGDFVPNSIELLSGENTNPEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 659
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 660 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 719
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ H + + + +
Sbjct: 720 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR--LEHEKIINLKL---------DVLEA 768
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSE 1039
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A + L M+ + E S
Sbjct: 769 EGKIVFLKKVVPGAAGNSYGIHVAGLAGIPQSVLTRAEN-LLYMRSQFQKERTGQETGSS 827
Query: 1040 FSS 1042
+S+
Sbjct: 828 YST 830
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 189/449 (42%), Gaps = 64/449 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ GI
Sbjct: 3 RQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCGIPYHAAK 60
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G K+ EQ + RK+V V+TP T D + + +
Sbjct: 61 IYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFLEQGSNNY 114
Query: 394 LAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
LA EGN G D G A++D + + + +++PK
Sbjct: 115 LAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKEIGRINPK 171
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV------Q 495
E++ + Q +F A L P+M + D S K+L
Sbjct: 172 EILIQ--------QSIQNEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTEN 223
Query: 496 LNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR-NGDILP 547
L G+ + SP + LE + DI + + + + LDD R N ++L
Sbjct: 224 LKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTRKNLELLT 283
Query: 548 YKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
LR + + L V T+ G RLLR I +PL+ + I+ RLD V L K+
Sbjct: 284 ------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKKEIDKRLDKVNSLFKD 337
Query: 604 SEVVMVVAQYLRKLPDLERLLGRVKA-RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLR 662
+ ++ + L + D+ERL GR+ + + L K+ L +++ GSL++ +
Sbjct: 338 GKASAIIRETLSSILDIERLSGRIAMQKTHGKDLLAL----KQSLNSVIRM-GSLIEEKK 392
Query: 663 IAMDLLMLMHKEGHIIPSLSRIFKPPIFD 691
++ L L ++E ++ + + + I D
Sbjct: 393 --LNFLQLNNEEKKLLTEIRDLLENSIDD 419
>gi|261206138|ref|XP_002627806.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis SLH14081]
gi|239592865|gb|EEQ75446.1| DNA mismatch repair protein msh-2 [Ajellomyces dermatitidis SLH14081]
Length = 966
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 162/295 (54%), Gaps = 20/295 (6%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA + + A RP I P+ V +K HP ++
Sbjct: 617 LAHLDVIVSFAHVSVHAPTAYVRPKIHPRGTGNTV----------LKEARHPCMEMQDDI 666
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L + L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 667 SFITNDVFLLRNESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 722
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 723 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 782
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN----SENYSKG--DQ 981
A+ +V I C LFATH+H LT +P+ AF N EN S G +
Sbjct: 783 AISEHIVTEIRCFALFATHFHELTALQEQYPNSVKNLHVVAFIGNGTEQKENDSTGKSKR 842
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQ 1036
E+ LYR+ G C +S+G+ VA + P+KVV A A ++ + +++Q
Sbjct: 843 EVTLLYRVEPGVCDQSFGIHVAELVRFPEKVVNMARQKAEELEDFTSSTIDNAQQ 897
Score = 47.4 bits (111), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 561 TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKL 617
+LY L+ C T +G RLL W+ PL + E I R +VE + ++E+ + + +LR +
Sbjct: 342 SLYGLLNHCKTPAGSRLLAQWLKQPLMNHEDIEKRQQLVEAFVVDTELRQTMQEDHLRSI 401
Query: 618 PDLERLLGRVK 628
PDL RL R +
Sbjct: 402 PDLYRLAKRFQ 412
>gi|269836700|ref|YP_003318928.1| DNA mismatch repair protein MutS [Sphaerobacter thermophilus DSM
20745]
gi|269785963|gb|ACZ38106.1| DNA mismatch repair protein MutS [Sphaerobacter thermophilus DSM
20745]
Length = 871
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 138/230 (60%), Gaps = 16/230 (6%)
Query: 790 VLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
VL+I G HP + G VPND L +S+ +LTGPNM GKST LR L
Sbjct: 580 VLEIVGGRHPVVEVTLETGQFVPNDTYLDTESNQIT----ILTGPNMAGKSTYLRQVALI 635
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LAQ+G FVP E + L D IFTR+GA D I TG+STF+VE ETA++L AT SLV
Sbjct: 636 VLLAQIGSFVPAERARIGLVDRIFTRIGAQDDIATGQSTFMVEMVETATILHHATPRSLV 695
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966
+LDE+GRGTST+DG AIA AV L R+ C+ LFATHYH LT+ P V
Sbjct: 696 VLDEIGRGTSTYDGLAIARAVVEHLHNSPRLGCKTLFATHYHELTELEKILPRVR----- 750
Query: 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ +GD E+VFL+R+ G SYG+ VA +AG+P+ VV A
Sbjct: 751 ---NYRVDVLEEGD-EVVFLHRVVPGGADRSYGIHVAQLAGMPRAVVRRA 796
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 160/387 (41%), Gaps = 64/387 (16%)
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISE 330
++QY ++K QY D ++FF++G FYE ++ DA++ LD +T +G+ ++ GI
Sbjct: 6 RRQYLSIKRQYPDTIVFFRLGDFYETFDDDAKLAASVLDITLTSREMGRGNRIPMAGIPC 65
Query: 331 SGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-GTIGPD 389
+ +LV G+KV EQ+ ++ R++ +VTP T D + D
Sbjct: 66 HAAQGYIARLVGAGHKVAICEQIGEPT------GRELVERRVTRIVTPGTVTDPAMLDSD 119
Query: 390 AVHLLA--IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL---LMQVS 444
H +A + +G G A D + IN AA A+ L+++
Sbjct: 120 TNHYIAAVLLDGARA--------GLAVADISTGEFATTEINAADPAAARAAVHRELLRLH 171
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLV---QLNGYFN 501
P E++ +A+ L E+ P A D SE + V +L +F
Sbjct: 172 PAEIVAP--ASPPDAEDPL--------PAEVVPEGAYITRRDRSEWRLEVADEELRRHFG 221
Query: 502 GSSSPWSKALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG 559
+ LE A G L+ +L+ + + + D++ Y R + +DG
Sbjct: 222 ------VETLEAYGCAGKPFAIRAAGALLQYLAETQVGSLKQIVDLVTYSTER-YMSLDG 274
Query: 560 QT-------------------LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
QT LD T G R+LR W+ PL D+ + +R D V Y
Sbjct: 275 QTRRNLELSESSRGERRHSLIAVLDQTRTPMGARMLRRWVGQPLLDLAELQDRQDAVAYF 334
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + V + L + DLERL+ RV
Sbjct: 335 VDRALVRARLRDALGHVSDLERLINRV 361
>gi|452980203|gb|EME79964.1| hypothetical protein MYCFIDRAFT_204401 [Pseudocercospora fijiensis
CIRAD86]
Length = 1143
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 164/289 (56%), Gaps = 25/289 (8%)
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
S+L E+ + K + + E I +++ +D L S A T S G +P + +P +R + G
Sbjct: 834 SLLSEIGM-KYTHFRECIQSLALLDCLFSLA-TISQQPGYT-KPTF---TSSPGIRIEAG 887
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
+ + L F VPN I L + R LL+TGPNMGGKS+ +R+ L
Sbjct: 888 RHPMIEQLLLDSF---------VPNSISLSSSA----TRALLITGPNMGGKSSYVRSVAL 934
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
I+AQ+G +VP C + L D +FTR+GA D +M GESTF+VE ET+ +L++AT SL
Sbjct: 935 IAIMAQIGSYVPAVSCEMGLLDAVFTRMGAHDNMMKGESTFMVEVGETSDILKQATPKSL 994
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDELGRGTST DG AIA +V + +VE C LF THY L + S P+ L+++
Sbjct: 995 VILDELGRGTSTHDGVAIAQSVLQHVVEEKKCLTLFITHYQTLARLADSFPNHELRNVHM 1054
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
F + E+ FLY + G SYGL VA +AG+P+ ++E A
Sbjct: 1055 KFT------EREGAEITFLYEVGEGVAHRSYGLNVARLAGLPRSLLEEA 1097
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 174/427 (40%), Gaps = 68/427 (15%)
Query: 263 PPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL----------- 311
P K++ +++ +K ++ D LL +VG Y L+ DA + K L
Sbjct: 233 PTSRKAKLTPLEQRIVELKRKHSDALLVVEVGYKYRLFGEDARVAAKVLSVVCIPGKFRF 292
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
D + + + K + V++L+ G+KVG + QLET+ +A + + + R
Sbjct: 293 DEHPSEAHMTKFASASFPTHRLHVHVKRLINAGHKVGIVRQLETAALKAAGANKSKLFER 352
Query: 371 KLVNVVTPSTTVDGTIG-----------PDAVHLLAIKEG---NCGPDNGSVVYGFAFVD 416
L N+ T +T VD G P + +LL + E G D V G V
Sbjct: 353 DLTNLYTKATYVDDEEGLGAPSGAAGGAPASGYLLCLTESYPKGVGSDE-KVQIGLIAVQ 411
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKE--VIYENRGLCKEAQKALRKFSAGS-AAL 473
A + D + L L+ +SP E VI E L K K + S G A L
Sbjct: 412 PATGDIIYDDFEDGWMRSELETRLLHISPAEFLVIGE---LSKATDKLVHYLSGGDDARL 468
Query: 474 ELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA-------LENVMQHDIGFSA--- 523
E P S + K +G SS ++ L+ V H + +A
Sbjct: 469 ERKPKPKTMAAESYSHITKFYADKMKTDGPSSSQVESSQGKGTLLDKV--HRLSENATIC 526
Query: 524 LGGLISHLSRLMLDDV----------------LRNGDILP-YKVYRDCL-RMDGQTLY-- 563
L +I+HL+ L V L NG+ L ++YR+ + + +L+
Sbjct: 527 LSAMITHLTDYGLQHVFDLTKCFQSFSARSHMLLNGNTLSSLEIYRNQTDQAERGSLFWT 586
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK--NSEVVMVVAQYLRKL-PDL 620
LD T G+RLLR W+ PL + ++ R+ VE L + + V ++Q L K DL
Sbjct: 587 LDRTQTKFGRRLLRKWVGRPLLNRARLDERVAAVEELREGMGTAGVARISQLLSKTKADL 646
Query: 621 ERLLGRV 627
ER L R+
Sbjct: 647 ERTLIRI 653
>gi|431744049|ref|ZP_19532921.1| DNA mismatch repair protein mutS [Enterococcus faecium E2071]
gi|430605677|gb|ELB43059.1| DNA mismatch repair protein mutS [Enterococcus faecium E2071]
Length = 881
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISVADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|320527174|ref|ZP_08028361.1| DNA mismatch repair protein MutS [Solobacterium moorei F0204]
gi|320132502|gb|EFW25045.1| DNA mismatch repair protein MutS [Solobacterium moorei F0204]
Length = 839
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 154/254 (60%), Gaps = 29/254 (11%)
Query: 804 ENGGLPVPNDIL-----------LGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA 852
ENG P+ +D++ + +D D LL+TGPNMGGKST +R T L VI+A
Sbjct: 567 ENGKHPILDDMMKNPKYVANSTDMHKDQD-----ILLITGPNMGGKSTYMRQTALIVIMA 621
Query: 853 QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDE 912
Q+GCFVP + C++ + D IFTR+GA+D I++G+STF+VE +E LQ+AT SL++ DE
Sbjct: 622 QMGCFVPAKSCIMPIFDKIFTRIGASDDILSGQSTFMVEMSEANLALQEATSSSLILFDE 681
Query: 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSN 972
+GRGTST+DG A+A A+ + I+ + +F+THYH LT + P+V ++M K N
Sbjct: 682 IGRGTSTYDGMALAQAMIEYIATCIHAKTMFSTHYHELTVISDNLPNV--KNMHVVVKEN 739
Query: 973 SENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFK 1032
++ E+ FLY++ G SYG+ VA +AG+P V+ A ++K + + +
Sbjct: 740 ND-------EVTFLYKMADGPAGHSYGINVARLAGLPDAVLNRAKD----LQKELESTKR 788
Query: 1033 SSEQRSEFSSLHEE 1046
+Q + +H+E
Sbjct: 789 VVQQNYQLVEMHKE 802
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 158/366 (43%), Gaps = 46/366 (12%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY VK +Y D +LF+++G FYE++ DA+I KELD +T G +V GI
Sbjct: 10 QQYLAVKKEYEDAILFYRIGDFYEMFFDDAKIASKELDLVLTGKNAGVEERVPMCGIPHH 69
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDA- 390
+ +LV+RG+KV EQ + ++A +++R ++ V+TP T + A
Sbjct: 70 AAAAYIPRLVSRGFKVAICEQTQDPKEAVG-----LVTRDVIRVITPGTVMQEISDEKAS 124
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V+L AI + G Y A V+ + +V I LL+Q + +
Sbjct: 125 VYLAAITDYGYG-------YSLAIVEMSTGENYVQNIEHK------DVLLLQTLLRSNVR 171
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK----LVQ--LNGYFNGSS 504
E +K L+ F EL V + D + +K+ L + L Y +
Sbjct: 172 EVVVPSDFKEKTLKSFR------ELQ---IVISYCDETRIKEEYLPLTEGILKDYDMHAY 222
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL-- 562
LEN +H +G + + L +D R L L +G+ +
Sbjct: 223 GRMLNYLENTQKHMLGHLQVTRIEREDEVLYMDFATRQNLELV-----QSLHENGKAITL 277
Query: 563 --YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
+LD+C ++ G R LR WI PL E I R + E+L++N + + DL
Sbjct: 278 WSFLDACKSAMGSRQLRKWIEKPLVSREKIEARFNKTEWLIQNFMRRQQLRDSFSNIYDL 337
Query: 621 ERLLGR 626
+RL+ R
Sbjct: 338 QRLIAR 343
>gi|293570767|ref|ZP_06681817.1| DNA mismatch repair protein MutS [Enterococcus faecium E980]
gi|431081632|ref|ZP_19495722.1| DNA mismatch repair protein mutS [Enterococcus faecium E1604]
gi|431118176|ref|ZP_19498130.1| DNA mismatch repair protein mutS [Enterococcus faecium E1613]
gi|431738993|ref|ZP_19527933.1| DNA mismatch repair protein mutS [Enterococcus faecium E1972]
gi|431740727|ref|ZP_19529638.1| DNA mismatch repair protein mutS [Enterococcus faecium E2039]
gi|291609239|gb|EFF38511.1| DNA mismatch repair protein MutS [Enterococcus faecium E980]
gi|430565564|gb|ELB04710.1| DNA mismatch repair protein mutS [Enterococcus faecium E1604]
gi|430568133|gb|ELB07190.1| DNA mismatch repair protein mutS [Enterococcus faecium E1613]
gi|430596536|gb|ELB34360.1| DNA mismatch repair protein mutS [Enterococcus faecium E1972]
gi|430602810|gb|ELB40360.1| DNA mismatch repair protein mutS [Enterococcus faecium E2039]
Length = 881
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELV-NDKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y S + KA+E H + L L +R G
Sbjct: 231 YLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|256852232|ref|ZP_05557618.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 27-2-CHN]
gi|260661736|ref|ZP_05862647.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 115-3-CHN]
gi|256615278|gb|EEU20469.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 27-2-CHN]
gi|260547483|gb|EEX23462.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 115-3-CHN]
Length = 854
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 177/327 (54%), Gaps = 38/327 (11%)
Query: 700 LTQFEAAIDSDFPDYQN------HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
LT E I + +++N + TDL+ + S L E + E+ +AI+ +D
Sbjct: 479 LTGSERYITPELKEHENLILEAENKSTDLEYQIFSDLREYIKTFIPKLQELGNAIASLDA 538
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPV 810
L SFA A ++ P+ QD+ +K+ HP L + G +
Sbjct: 539 LTSFATVAEENNYC-----------RPSFHQDS--QEIKVVAGRHPVVEKVLAD--GSYI 583
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PNDI + +D+ L+TGPNM GKST +R L ++AQ+G FVP L + D
Sbjct: 584 PNDIQMADDTS-----VFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEAALPIFDQ 638
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
IFTR+GA D +++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+
Sbjct: 639 IFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAIV 698
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+ L +++ + LFATHYH LT + H+ H+ ++ + L+FL+++
Sbjct: 699 KYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGA---------TQENGNLIFLHKIL 749
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAAS 1017
G +SYG+ VA +AG+P KV+ AS
Sbjct: 750 PGPADQSYGIHVAQLAGLPNKVLREAS 776
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 162/362 (44%), Gaps = 35/362 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
KQY+++KSQY D LF++VG FYEL+E DA G + L+ +T G+
Sbjct: 3 KQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPIPMAGVPHQ 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D V LV +GYKV EQLE +QAK ++ R ++ +VTP T ++ GP+
Sbjct: 63 AVDSYVNTLVEKGYKVALCEQLEDPKQAKG-----MVKRGIIQLVTPGTMMNE--GPNGA 115
Query: 392 HLLAIKEGNCGPDNGSVVYGF--AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
KE N S GF A+ D + ++ + S A + L+ + KEV+
Sbjct: 116 -----KESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLK---SFADVLNELLSLRTKEVV 167
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
+E G ++QK + K S +T + + D +EV +Q N + +K
Sbjct: 168 FE--GSLSDSQKDVLKKS------NITVSTPIQDQEKHAEVSYAIQ--KLSNQAEKDATK 217
Query: 510 ALENVM----QHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLD 565
L + + + + L + V++N L + +M LD
Sbjct: 218 QLVIYLLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASA-KTGKKMGSLFWLLD 276
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
T+ G RLL+ W+ PL + I R +V+ ++ N V L+ + DLERL G
Sbjct: 277 KTNTAMGGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFTREGVKDALKGVYDLERLTG 336
Query: 626 RV 627
R+
Sbjct: 337 RI 338
>gi|407793321|ref|ZP_11140355.1| DNA mismatch repair protein MutS [Idiomarina xiamenensis 10-D-4]
gi|407214944|gb|EKE84785.1| DNA mismatch repair protein MutS [Idiomarina xiamenensis 10-D-4]
Length = 878
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 165/289 (57%), Gaps = 28/289 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L EL + + + + + A++ +DV SFA AS G + P++ Q P
Sbjct: 534 LFELLLPQLNAFQRMASALAELDVYCSFARCAS-DYGFV----------KPSLTQQ---P 579
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
L++K HP + + ND++L E R L++TGPNMGGKST +R T LAV
Sbjct: 580 ALQLKQARHPVIERLSQEPFIANDVILDEKR-----RVLMITGPNMGGKSTYMRQTALAV 634
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
ILA +G +VP + V+ D IFTR+GA D + +G STF+VE TETA++L A+ SLV+
Sbjct: 635 ILAHIGSYVPADEAVIGPIDRIFTRIGAADDLASGRSTFMVEMTETATILHNASAQSLVL 694
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A ++L I+C LFATHY LT+ P H+
Sbjct: 695 MDEIGRGTSTYDGLSLAWACAQKLAADISCFTLFATHYFELTELAEQLPATVNVHV---- 750
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
E GD + FL+R++ GA S+G+QVA +AG+P V+ A
Sbjct: 751 ----EAMEHGD-TIAFLHRVSEGAASRSFGIQVAQLAGLPADVLALAKQ 794
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 169/403 (41%), Gaps = 85/403 (21%)
Query: 265 EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT---LSGVG 321
+ +K + +QY +K+++ +LLF+++G FYEL+ DA+ + LD +T SG
Sbjct: 10 QQIKSHTPMMQQYLRIKAEHPHILLFYRMGDFYELFFDDAKRAAQLLDISLTKRGQSGGA 69
Query: 322 KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +++ + +L+ +G V EQ+ +K + RK+V +VTP T
Sbjct: 70 PIPMAGVPYHAVENYLARLIQQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTV 124
Query: 382 VDGTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
D ++ + L+A+ + G YG A +D ++ R W+ ++DD AAL A
Sbjct: 125 TDESLLQERQDNLLVAVSQDKQG-------YGLAALDISSGRFWLSEVSDD---AALQAE 174
Query: 440 LMQVSPKEVIYENR----GLCKEAQKALRK----FSAGSAALELTPAMAVTDFLDASEVK 491
L ++ E++Y L K A+ R+ F SA +L LD+ EV+
Sbjct: 175 LQRLQAAELLYPESFNQVSLLKPARGLRRRPDWDFELDSARQQLR-QQFQVQHLDSFEVE 233
Query: 492 KLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY--K 549
L +G A G L+ ++ D R LP+
Sbjct: 234 SL------------------------PLGLCAAGCLLQYVK-----DTQRTA--LPHIRN 262
Query: 550 VYR----DCLRMDGQT---LYLDSCVTSSGKRL---------------LRSWICHPLKDV 587
+++ D + +D T L L + + L + W+ PL++
Sbjct: 263 IHKEQPDDAIILDAATRRNLELTESFSGAATHLAAVLDHTVSAMGSRLFKRWLHRPLRNQ 322
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
E + R V L + S V Q L+ + D+ER++ R+ R
Sbjct: 323 EQLKQRYQAVAALTE-SLFFNDVQQQLKGIGDVERIVARLSLR 364
>gi|34330121|dbj|BAC82442.1| hypothetical protein [Gallus gallus]
Length = 861
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 188/354 (53%), Gaps = 38/354 (10%)
Query: 725 ETLSILIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
E +++ I AS ++E I I+ +D + SFA ++ + RP++L + +
Sbjct: 500 EAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGR 559
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
V +KG HP ++ +PND+ + ++TGPNMGGKST
Sbjct: 560 IV----------LKGARHPCIEVQDEVAFIPNDVTFEKGKQ----MFHIITGPNMGGKST 605
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T + V++AQ+GCFVPC+ +++ D I R+GA D + G STF+ E ETAS+L+
Sbjct: 606 YIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILR 665
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
A+++SL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V
Sbjct: 666 TASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTV 725
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ D L LYR+ +G C +S+G+ VA +A P+ V+E+A A
Sbjct: 726 NNLHVTAL---------TSDDTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESAREKA 776
Query: 1021 LAM---------KKSIGE--SFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDD 1063
L + K+S GE + + +R E + +++L + + D + +D
Sbjct: 777 LELEEFQDIGRPKESEGEPAAKRCYREREEGEKIIQDFLSQVKALPLTDMSEED 830
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 46/336 (13%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V G +VD ++ V D+ + L ALL+Q+ PKE + E K +
Sbjct: 84 DGQRVIGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQ 143
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
G L DF V+ L +L G + E M+ + S+L
Sbjct: 144 VVQRGGI---LITDRKKADFTTKDIVQDLNRLLKSRKGEQMNSAALPE--MEKQVAVSSL 198
Query: 525 GGLISHLSRLMLDD-----------------VLRNGDILPYKVYRDCLRMDGQTL----Y 563
+I L L+ DD VL N + +++ + T
Sbjct: 199 SAVIKFLE-LLSDDSNFGQYELTTFDLSQYMVLDNAAVQALNLFQSSVENANNTQSLAGL 257
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G+RL+ WI PL D I RL++VE + ++E+ + + LR+ PDL R
Sbjct: 258 LNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNR 317
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L + + QA++ L + Q + ++V+ L H+ H + L+
Sbjct: 318 LAKKFQR--QAAT-----LQDCYRMYQAINQLPNVVQALE--------KHEGAHQMLLLA 362
Query: 683 RIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
F P+ D KFL E +D D +NH+
Sbjct: 363 G-FITPLNDIHSDFSKFLEMIETTVDMD--KVENHE 395
>gi|238927479|ref|ZP_04659239.1| DNA mismatch repair protein MutS [Selenomonas flueggei ATCC 43531]
gi|238884761|gb|EEQ48399.1| DNA mismatch repair protein MutS [Selenomonas flueggei ATCC 43531]
Length = 860
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 225/459 (49%), Gaps = 62/459 (13%)
Query: 576 LRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASS 635
LR + H L D G++ R E M+ A Y L +L R K+ +Q
Sbjct: 402 LRDELTHALVDEPGLSVR-----------EGGMIRAGYDADLDELRRFSHDSKSLLQEME 450
Query: 636 CIVLPLIGKKVLKQQV-KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSD 694
G K LK KVFG ++ + H +P I K + +
Sbjct: 451 ERERTRTGIKTLKIGYNKVFGYYIE----------VRHSGRDQVPE-GYIRKQTLANTER 499
Query: 695 GLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVL 754
+ + L FEA I +T L+ + L E E+ V AI+ +DVL
Sbjct: 500 FITEELKNFEAKILG-----AEEKITALEYHLFTELRERVREQLVPIQGVARAIARVDVL 554
Query: 755 RSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVP 811
+S A A+ + P V D G ++I+ HP L + + VP
Sbjct: 555 QSLAAAAASY-----------RYVRPTVGADGG---IRIRDGRHPLVERILQRD--VFVP 598
Query: 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871
ND L + T+L+TGPNM GKST +R L ++AQ+G FVP ++ D I
Sbjct: 599 NDTELSHGGTE----TMLITGPNMAGKSTYMRQVALLTLMAQVGSFVPARTAEIAPVDRI 654
Query: 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931
FTR+GA+D +++G+STF+VE E A +L++AT+DSLVILDE+GRGTSTFDG +IA AV
Sbjct: 655 FTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIGRGTSTFDGMSIARAVVE 714
Query: 932 QLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTS 991
+ RI+ + LFATHYH LT+ + +++ A + +N +VFL R+ +
Sbjct: 715 HIDGRIHAKTLFATHYHELTE----MENERIRNYCIAVREKGKN-------VVFLRRIVA 763
Query: 992 GACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGES 1030
GA +SYG+ VA +AG+PQ+V E A A++ + +S
Sbjct: 764 GAADKSYGIHVARLAGLPQRVTERAEEILHALEAAAPQS 802
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 163/382 (42%), Gaps = 45/382 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSG-VGKCRQVGISESG 332
+QY K + LLFF++G FYE++ DA++ KEL +T SG + K G+
Sbjct: 11 QQYLAAKEAHPGELLFFRLGDFYEMFFDDAKVAAKELGLTLTSRSGDLEKNPMCGVPYHA 70
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDA-- 390
D + +LVA+G+KV EQ+ + H R++V VVTP T + DA
Sbjct: 71 ADSYIARLVAKGFKVAIAEQIGDPKAKGLTH------REVVKVVTPGTALSDEALRDASN 124
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDC--AALRVWVGTINDDASCAALGALLMQVSPKEV 448
++++ + E P G V A + A V+ G + A+ + L +++ + +
Sbjct: 125 IYIVLLHE----PAPGQFVLAGADITTGEAFYAVYAG---EHAAQQIMDELYRRMAAELL 177
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ E L E +R F A P V+ ++ Q +F P
Sbjct: 178 LTEGFSLADE----VRAFLAHR-----LPHCVVSVVSREADAALPAQ---HFPAEEIPCD 225
Query: 509 KALENVMQHDIGF--SALGGLISHLSRLMLDD----------VLRNGDILPYKVYRDCLR 556
+ + + + +S ++RL D LRN +I + RD +
Sbjct: 226 AGARAALAALLTYLHETVMADLSQINRLAFLDAAETMQLDTYTLRNLEIT--RSLRDGGK 283
Query: 557 MDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
+ LD T G RLL++W+ HPL I+ RLD V L++ S + + L
Sbjct: 284 KNTLFDVLDFTRTPMGTRLLKAWLEHPLLTPHRIDARLDAVAELVEKSTLRDALRDALHT 343
Query: 617 LPDLERLLGRVKARVQASSCIV 638
+ D ERLL R++ + + +V
Sbjct: 344 VYDFERLLTRIETQTANARDLV 365
>gi|427431014|ref|ZP_18920710.1| DNA mismatch repair protein MutS [Caenispirillum salinarum AK4]
gi|425878191|gb|EKV26910.1| DNA mismatch repair protein MutS [Caenispirillum salinarum AK4]
Length = 909
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 162/292 (55%), Gaps = 34/292 (11%)
Query: 759 VTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLP-VPNDI 814
VTA ++ A+ R + P V Q G I+G HP AL G P V ND
Sbjct: 593 VTAGLAELAVDRRYV-----RPVVEQ---GTAFDIRGGRHPVVEAALERAGDGPFVANDC 644
Query: 815 LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR 874
L + R L+TGPNM GKST LR L ILAQ+G FVP E + + D +F+R
Sbjct: 645 DLSPEQ-----RLWLITGPNMAGKSTFLRQNALIAILAQMGAFVPAESARIGVVDRLFSR 699
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+GA D + G STF+VE ETA++L +AT+ SLVILDE+GRGT+TFDG +IA+A L
Sbjct: 700 VGAADDLARGRSTFMVEMVETAAILNQATERSLVILDEIGRGTATFDGLSIAWATVENLH 759
Query: 935 ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGAC 994
E CR LFATHYH LT A L+ ++C +S + E+VFL+ + +GA
Sbjct: 760 EANRCRALFATHYHELTALTAR-----LKRLSC----HSMRVKEWQGEVVFLHEVAAGAA 810
Query: 995 PESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEE 1046
SYG+ VA +AG+P V+ A + + E+ +S EQ S + L ++
Sbjct: 811 DRSYGIHVARLAGLPPAVI--------ARAEEVLETLESGEQSSAITRLADD 854
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 164/370 (44%), Gaps = 37/370 (10%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY ++K ++ D +LF+++G FYEL+ DA + LD +T G + G+
Sbjct: 36 QYLSIKREHADCILFYRMGDFYELFFDDAVKAAEALDIALTKRGKHAGEDIPMCGVPVHS 95
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+ + KL+ +G+KV EQ+E +AK R +++ R+ V +VTP T + ++ H
Sbjct: 96 HEAYLAKLIRKGFKVAVCEQMEDPAEAKKRGGKALVRREAVRIVTPGTITEDSLLDSRRH 155
Query: 393 --LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
L A+ + G G A++D + + + AL +++P E++
Sbjct: 156 NYLAAVADAGGG-------LGLAWLDVSTGAFTCQPVEERNLTHALA----RLAPGELLA 204
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY-----FNGSSS 505
+R L KE+ F+ L P+ F + K+L L G F G S
Sbjct: 205 PDRLLQKES--LFEVFTEYRDRLSPLPS---ARFDSTNAGKRLQALYGVQALDAFGGFSR 259
Query: 506 PWSKALENVMQHDIGFSALGGL--ISHLSR------LMLDDVLRNGDILPYKVYRDCLRM 557
A ++ + + + G L I L R + +D R L + + R
Sbjct: 260 AEVAAAGTLVDY-VELTQKGKLPRIGALRRMGEGAAMEIDAATRRNLELAETLTGE--RK 316
Query: 558 DGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
+D VT +G RLL + + PL + I+ RLD V++ ++ V V + L++
Sbjct: 317 GSLLQVIDRTVTGAGARLLAAHLSAPLTEPAEIDARLDAVQFFVEAPTVREDVRERLKRC 376
Query: 618 PDLERLLGRV 627
PD+ER L R+
Sbjct: 377 PDVERALSRL 386
>gi|94496583|ref|ZP_01303159.1| DNA mismatch repair protein MutS [Sphingomonas sp. SKA58]
gi|94423943|gb|EAT08968.1| DNA mismatch repair protein MutS [Sphingomonas sp. SKA58]
Length = 914
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 144/234 (61%), Gaps = 17/234 (7%)
Query: 786 NGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
+GG L I G HP AL + G V ND LGE SD R L+TGPNMGGKST L
Sbjct: 620 HGGQCLDIVGGRHPVVEDALRKEGQPFVANDCRLGE-SD----RLWLVTGPNMGGKSTFL 674
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L VILAQ G +VP + ++L D +F+R+GA+D + G STF+VE ETA++L +A
Sbjct: 675 RQNALIVILAQAGGYVPAQSATMTLVDRLFSRVGASDNLAKGRSTFMVEMVETAAILAQA 734
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
++ S VILDE+GRGTST+DG A+A+AV + E CR LFATHYH LT+ + P ++L
Sbjct: 735 SERSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNQCRCLFATHYHELTRLAETLPSLSL 794
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H+ KGD LV L+ L G SYGL VA +AG+P V++ A
Sbjct: 795 HHV-------RAREWKGD--LVLLHELAQGPADRSYGLAVARLAGLPPAVLKRA 839
Score = 68.9 bits (167), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG---VGKCRQVGISESG 332
QY +K+Q D LLF+++G F+EL+ DA++ LD +T G G+
Sbjct: 45 QYLALKAQAQDCLLFYRMGDFFELFFDDAKLAAATLDIALTSRGDHEGAPTPMCGVPVHS 104
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
+ + +L+ G++V EQ ET QAKAR + ++++R +V VT T + T+
Sbjct: 105 AESYLARLIKGGHRVAIAEQTETPAQAKARGSKALVARDIVRYVTAGTLTEETL 158
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D VT +G RLL I PL D+ I RL +V+ ++ + V LR LPD+ R
Sbjct: 326 IDRTVTGAGARLLAQDISAPLMDLSAIEARLGLVQMFHDDAGLRDQVRGALRALPDIGRA 385
Query: 624 LGRV 627
LGRV
Sbjct: 386 LGRV 389
>gi|363731309|ref|XP_426110.3| PREDICTED: DNA mismatch repair protein Msh2 [Gallus gallus]
Length = 907
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 187/354 (52%), Gaps = 38/354 (10%)
Query: 725 ETLSILIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
E +++ I AS ++E I I+ +D + SFA ++ + RP+IL + +
Sbjct: 546 EAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGR 605
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
V +KG HP ++ +PND+ + ++TGPNMGGKST
Sbjct: 606 IV----------LKGARHPCIEVQDEVAFIPNDVTFEKGKQ----MFHIITGPNMGGKST 651
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T + V++AQ+GCFVPC +++ D I R+GA D + G STF+ E ETAS+L+
Sbjct: 652 YIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILR 711
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
A+++SL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P V
Sbjct: 712 TASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHFHELTALADQVPTV 771
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ D L LYR+ +G C +S+G+ VA +A P+ V+E+A A
Sbjct: 772 NNLHVTAL---------TSDDTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESAREKA 822
Query: 1021 LAM---------KKSIGE--SFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDD 1063
L + K+S GE + + +R E + +++L + + D + +D
Sbjct: 823 LELEEFQDIGRPKESEGEPAAKRCYREREEGEKIIQDFLSQVKALPLTDMSEED 876
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 46/336 (13%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V G +VD ++ V D+ + L ALL+Q+ PKE + E K +
Sbjct: 130 DGQRVIGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQ 189
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
G L DF V+ L +L G + E M+ + S+L
Sbjct: 190 VVQRGGI---LITDRKKADFTTKDIVQDLNRLLKSRKGEQMNSAALPE--MEKQVAVSSL 244
Query: 525 GGLISHLSRLMLDD-----------------VLRNGDILPYKVYRDCLRMDGQTL----Y 563
+I L L+ DD VL N + +++ + T
Sbjct: 245 SAVIKFLE-LLSDDSNFGQYELTTFDLSQYMVLDNAAVQALNLFQSSVENANNTQSLAGL 303
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G+RL+ WI PL D I RL++VE + ++E+ + + LR+ PDL R
Sbjct: 304 LNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNR 363
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L + + QA++ L + Q + ++V+ L H+ H + L+
Sbjct: 364 LAKKFQR--QAAT-----LQDCYRMYQAINQLPNVVQALE--------KHEGAHQMLLLA 408
Query: 683 RIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+F P+ D KFL E +D D +NH+
Sbjct: 409 -VFITPLNDIHSDFSKFLEMIETTLDMD--KVENHE 441
>gi|170100210|ref|XP_001881323.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644002|gb|EDR08253.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1291
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 155/308 (50%), Gaps = 26/308 (8%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F W I + +D L S A SS A+ P P+ +
Sbjct: 953 LFEEFDTDRVLWLRAIRVFAELDCLFSLA----KSSAAIGEPSCRPEF------VEGDAA 1002
Query: 790 VLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ + L HP L N +PND+ LG D + LLTGPNM GKST++R T +
Sbjct: 1003 FVDFEQLRHPTLCLSTNLKSFIPNDVKLGGDEG----KIALLTGPNMAGKSTVMRMTAVG 1058
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQLG VP L D+I TR+GA D + + STF VE E +L+ AT SLV
Sbjct: 1059 VIMAQLGMLVPAARAKLCPVDSIITRMGAYDNMFSNASTFKVELDECCKILRDATPKSLV 1118
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTSTFDG AIA AV QL FATHY LT +FA HP++ HM+
Sbjct: 1119 ILDELGRGTSTFDGMAIAAAVLHQLATHTLPLSFFATHYSSLTDDFAYHPNIRNMHMSTI 1178
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
++LVF+++L G S+G VA +AGVP VVE A + K+
Sbjct: 1179 VDEEK-------RDLVFMFKLVEGVAESSFGTHVANLAGVPLPVVERAD----VISKTFA 1227
Query: 1029 ESFKSSEQ 1036
+ FK Q
Sbjct: 1228 QQFKEKLQ 1235
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 224/453 (49%), Gaps = 57/453 (12%)
Query: 225 EEEADTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQY 284
EE+ S + +L + I+D + RRP +P YD RT++IP A K + + Q+W +K +
Sbjct: 332 EEKKAAESPYSFL--ADIKDKDGRRPGEPNYDPRTIFIPKSAWKDFTPFETQFWEIKQNH 389
Query: 285 MDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARG 344
D +LFF+ GKF+ELYE DA +GH+ D K+T S V K VG+ E + K + +G
Sbjct: 390 YDTILFFQKGKFFELYEDDARVGHQVFDLKLT-SRV-KMSMVGVPEMSFNFWAAKFLGKG 447
Query: 345 YKVGRIEQLETSEQAKARHT------------NSVISRKLVNVVTPSTTVDGTIGPD--A 390
YKVGR+EQ ET+ A+ R + ++ R+L V T T VD + D A
Sbjct: 448 YKVGRVEQAETALGAEMRMAATKGKASEDKSKDKIVRRELNKVYTNGTLVDPELLTDEQA 507
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
H ++I E P N +G ++C+ + + + DD L LL Q+ PKE++Y
Sbjct: 508 GHCISICEEGSEPSNNK--FGICVLECSTSQFNLSSFEDDVCRTKLETLLRQIRPKELVY 565
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF-LDAS--EVKKLV---QLNGYFNGSS 504
+ L Q+ L+ S A T +V F +A+ E+K L + + +
Sbjct: 566 KKGTLSVATQRLLK--SILPPACLWTGLRSVEGFNYEATLQEIKALFPPEEDDNMDDTDE 623
Query: 505 SPWSKALENVMQHDIG----FSALGGLISHLSRLMLD-DVL--RNGDIL-PYKVYRDCLR 556
S ++ + ++ G ALG +I +L +L +D D+L +N ++ P K R L
Sbjct: 624 SLLPSSVPDCIREMGGDQSAIEALGSMIWYLRQLNIDKDILSMKNFNVYDPMKRGRG-LT 682
Query: 557 MDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
+DGQTL L C+T GKRL R W+C PL D+ IN R VV
Sbjct: 683 LDGQTLAHIEILLNNEGTEDGSLLTLLRRCITPFGKRLFRIWLCMPLSDISAINAR-KVV 741
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
+ ++K+ + LPDLER++ R+ A+
Sbjct: 742 QDILKHPTFEASFTGVAKGLPDLERIVSRIHAK 774
>gi|358377989|gb|EHK15672.1| hypothetical protein TRIVIDRAFT_56280 [Trichoderma virens Gv29-8]
Length = 1095
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 168/340 (49%), Gaps = 39/340 (11%)
Query: 680 SLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKAS 739
+LSR P + + D+ AA D F D+ + +
Sbjct: 750 ALSRFHTPEVIRLINERDQHREALAAACDKAFKDF----------------LATIASEYQ 793
Query: 740 QWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP 799
+ I A++ +D L S + A+ +P LP + P++ G HP
Sbjct: 794 PLRDAISALATLDCLLSLSKVAAQP--GYSKPTFLPSTSEPSISISQG---------RHP 842
Query: 800 FALGENGGLPVPNDILLGEDSDDCLPRTL--LLTGPNMGGKSTLLRATCLAVILAQLGCF 857
A G +P L P L L+TGPNMGGKS+ +RA L V+L+Q+G F
Sbjct: 843 IAEQTLEGSYIPFTTTLSH------PSALAHLITGPNMGGKSSFVRAVALIVLLSQIGSF 896
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L+L D I TR GA D + GESTF+VE +ETA +L+ AT SLVILDELGRGT
Sbjct: 897 VPADSLTLTLCDAIHTRAGARDNLFAGESTFMVEVSETARILRSATPRSLVILDELGRGT 956
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
ST DG AIA +V +V C LF THY L + VT HM K N++
Sbjct: 957 STHDGAAIAQSVLHYVVTETRCLTLFITHYQNLARVADGLLGVTNVHM----KFNAQTGD 1012
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
G++E+ FLY + G SYGL VA +A +P+KV++ A+
Sbjct: 1013 DGEEEITFLYEVGEGIAHRSYGLNVARLARIPKKVLDVAA 1052
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 168/417 (40%), Gaps = 61/417 (14%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + Q+ ++K +++D +L +VG + + DA + KEL D +
Sbjct: 192 KLTPMELQFLDIKRKHLDTILIVEVGYKFRFFGEDARVAAKELGIVCIPGKMRYDEHPSE 251
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVV 376
+ + + I + ++LVA G+KVG + Q+ET+ KA + N+ RKL N+
Sbjct: 252 AHLDRFASASIPVHRLPVHAKRLVAAGHKVGVVRQIETAALKKAGDNRNAPFVRKLTNLY 311
Query: 377 TPSTTVD--------GTIGPDAVHLLAIKE---GNCGPDNGSVVYGFAFVDCAALRVWVG 425
T T +D + P +LL I E G D +V G V A +
Sbjct: 312 TKGTYIDENGELDSQDSSTPSGGYLLCITETATKGSGTDE-NVNVGVLAVQPATGDIIYD 370
Query: 426 TINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-------AALELTPA 478
T D + + L+ +SP E + L K K ++ S S + +E P
Sbjct: 371 TFEDGFMRSEIETRLLHISPCEFLIVG-DLTKGTDKLIQHLSGSSTNVFGDRSRVERVPK 429
Query: 479 MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS-ALGGLISHLSRLMLD 537
S V + + S L+ V++ + L +I+HL L+
Sbjct: 430 SKTMAAEAYSHVTQFYADQVKEASDNETASALLDKVLKLPEAITICLSAMITHLQEYGLE 489
Query: 538 DV----------------LRNGDIL-PYKVYRDCL--RMDGQTLY-LDSCVTSSGKRLLR 577
+ L NG L +VYR+ G + +D +T G+RLLR
Sbjct: 490 HIFGLTKYFQSFSTRSHMLINGTTLESLEVYRNSTDHSQKGSLFWAVDKTLTRFGQRLLR 549
Query: 578 SWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQAS 634
W+ PL D E ++ RL V+ L+ Q + DLERLL KA ++ S
Sbjct: 550 KWVGRPLLDRERLDERLAAVQELLDK--------QSTSPVDDLERLLTTTKADLERS 598
>gi|257899421|ref|ZP_05679074.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15]
gi|257837333|gb|EEV62407.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15]
Length = 881
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y S + KA+E H + L L +R G
Sbjct: 231 YLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|257457556|ref|ZP_05622723.1| DNA mismatch repair protein MutS [Treponema vincentii ATCC 35580]
gi|257444942|gb|EEV20018.1| DNA mismatch repair protein MutS [Treponema vincentii ATCC 35580]
Length = 880
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 159/273 (58%), Gaps = 30/273 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
I+ +DVL+SFA A++ + P D +L I+ HP EN
Sbjct: 566 IAELDVLQSFAYAAALHAWV-----------KPEFSADG---LLDIREGRHPVV--ENHL 609
Query: 806 -GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
G VPN I L +D +P L+TGPNM GKST LR T L V+LAQ+G FVP E +
Sbjct: 610 PAGEFVPNSIKLSSAADADIPSFALITGPNMAGKSTFLRQTALIVLLAQVGSFVPAEKAL 669
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
L+ D IF R+GA+D + GESTFLVE TETA +L+ A+ +SLVI+DE+GRGTST DG++
Sbjct: 670 LTPVDCIFCRVGASDNLARGESTFLVEMTETAYILRNASVNSLVIMDEIGRGTSTGDGFS 729
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
IA AV L++ I + LFATHYH E A H LQ + + ++ + ++V
Sbjct: 730 IARAVSEYLLQTIGAKTLFATHYH----ELAQLIHPRLQRLCL-------DVAETEGKIV 778
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
FL ++ G SYG+ VA +AG+P+ V+ A+
Sbjct: 779 FLKKVIEGIAAHSYGVHVAELAGLPETVIRRAT 811
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 115/455 (25%), Positives = 182/455 (40%), Gaps = 97/455 (21%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQVGI 328
++ +QY ++K+QY D +LFF++G FYE++ DA K L+ +T +G C GI
Sbjct: 7 ITPMMQQYLSIKAQYKDAVLFFRLGDFYEMFNDDAIEVSKLLNLTLTQRTGSPMC---GI 63
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGTIG 387
+ +L+ G KV EQ+ + + RK+V V+TP T T D +
Sbjct: 64 PYHASRIYIARLLRAGKKVAICEQVSDVVPGE------LTERKIVEVITPGTATGDDFLE 117
Query: 388 PDAVHLLAIKEGNCGPD----NG--SVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ LA C P NG V GFA++D + + + L
Sbjct: 118 QGQNNYLAAV--YCTPKEITYNGVTDVFIGFAYLDVSTGEFFATSFPRSDFAEQFKKELG 175
Query: 442 QVSPKEVIYEN---------RGLCKEAQKALRK------FSAGSA--------------- 471
+V P+E++ + + LC E + L+ FSA SA
Sbjct: 176 RVQPREILIQISLADSVPALKALCGEYPQMLQNLYPDWHFSAASAEKRLCACFGTESLKS 235
Query: 472 ------ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALG 525
+ EL PA + +LD + G++ P ++ D
Sbjct: 236 FGLTAPSPELPPAGLLLQYLDQT------------TGAALPHITGIKVYRDSDF------ 277
Query: 526 GLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHP 583
+M+DD R L ++ D TL+ ++ T+ G RLLR W+ HP
Sbjct: 278 --------VMMDDATRKNLELLQNLHDST---DAFTLFETVNYAKTAMGTRLLRQWLYHP 326
Query: 584 LKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIG 643
L+ E IN RL+ L +N + + V L + D+ RL GRV + G
Sbjct: 327 LRTAEEINARLNKTVALFRNEKALAAVRTTLAAVLDIRRLTGRVAMQRAH---------G 377
Query: 644 KKVL--KQQVKVFGSLVKGLRIAMDLLMLMHKEGH 676
K +L KQ +K LV RI + + +E H
Sbjct: 378 KDLLGIKQSLKACIELVHLSRINSLFFLQLPQELH 412
>gi|431907876|gb|ELK11483.1| DNA mismatch repair protein Msh3 [Pteropus alecto]
Length = 1080
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 165/304 (54%), Gaps = 22/304 (7%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D +AE L L E F E + +H ++ ID + S A A G RP + Q +
Sbjct: 745 VLDCNAEWLDFL-ENFSEHYHSLCKAVHHLATIDCIFSLAKVAK--QGDYCRPTL--QEE 799
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L DS+ R +++TGPNMGGK
Sbjct: 800 RKIMIKNGRHPVIDV-------LLGEQDQY-VPNSTNLSGDSE----RVMIITGPNMGGK 847
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + + IFTR+GA D I G STF+ E T+TA +
Sbjct: 848 SSYIKQVALITIMAQIGSYVPAEEATIGIVNGIFTRMGAADNIYKGHSTFMEELTDTAEI 907
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-EFASH 957
++KAT SLVI+DELGRGTST DG AIAYA + + LF THY P+ + E +
Sbjct: 908 IRKATSRSLVIMDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELEKSYS 967
Query: 958 PHVTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
V HM N G++E + FLY++T G SYGL VA +A VP++++
Sbjct: 968 QQVGNYHMGFLVNENESKQDPGEEEVPEFVTFLYQITRGIAARSYGLNVAKLADVPEEIL 1027
Query: 1014 EAAS 1017
+ A+
Sbjct: 1028 KKAA 1031
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 162/403 (40%), Gaps = 79/403 (19%)
Query: 256 DKRT--LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDW 313
+KRT +Y P E+ QY +K Q D +L + G Y + DAEI +EL+
Sbjct: 213 NKRTKSIYTPLES---------QYIEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNI 263
Query: 314 KITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLV 373
L I + V +LVA+GYK+ ++
Sbjct: 264 YCHLDH--NFMTASIPAHRLFVHVRRLVAKGYKLDDAVNVD------------------- 302
Query: 374 NVVTPSTTVDGTIGPDAVHLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDD 430
++T ++T +LL I KE GS+ G V A V + D
Sbjct: 303 EIMTDTSTS---------YLLCICENKENLKEKKKGSIFIGIVGVQPATGEVVFDSFQDS 353
Query: 431 ASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA-------------LELTP 477
AS + L ++ + P E++ + L ++ + + + +A S E +
Sbjct: 354 ASRSELETRILSLQPVELLLPSH-LSEQTEMLIHRATAVSVRDDRIRVERMDNMYFEYSH 412
Query: 478 AMA-VTDFL--DASEVKKLVQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSA 523
A VT+F D ++K +G N + + K LE V+ F
Sbjct: 413 AFQMVTEFYSNDVVDIKGSQSFSGIINLEKPVICSLAAIIRYLKEFNLEKVLSKPKNFKQ 472
Query: 524 LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICH 582
L G + ++ + LRN +IL + + + G + LD TS G+R L+ W+
Sbjct: 473 LSGDMEFMT--INGTTLRNLEILQNQTDK---KTKGSLFWVLDHTKTSFGRRKLKKWVTQ 527
Query: 583 PLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLERLL 624
PL + IN+RLD V E L S V + +LRKLPD+ER L
Sbjct: 528 PLLKLRKINDRLDAVSEVLHSESSVFDQIENHLRKLPDIERGL 570
>gi|380496043|emb|CCF31929.1| DNA mismatch repair protein msh-2 [Colletotrichum higginsianum]
Length = 921
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 163/295 (55%), Gaps = 12/295 (4%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ + A+ + V+ ++ I L V S + ++H P + P + +
Sbjct: 563 TQSSLVSEVVGVAASYCPVLERLAGI--LAHLDVIVSFAHCSVHAP---SEYVRPTMHKR 617
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + +K HP ++ + ND+ L D L ++TGPNMGGKST +R
Sbjct: 618 GEGQTI-LKEARHPCLEMQDDVQFITNDVTLTRDKSSFL----IITGPNMGGKSTYIRQI 672
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 673 GVIALMAQIGCFVPCTEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAE 732
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT HP V H+
Sbjct: 733 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTALADEHPQVHNLHV 792
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
A SK +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 793 AAHIGGGGGENSK--REVTLLYKVDDGVCDQSFGIHVAELVRFPDKVVRMAKRKA 845
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 18/156 (11%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T G RLL W+ PL + I R +VE + ++E+ + ++LR +PDL R
Sbjct: 319 LNHCKTPVGSRLLSQWLKQPLMNKAEIEKRQQLVEAFVNDTELRQTMQEEHLRSVPDLYR 378
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R + GK L+ V+ + +++ L M L + E + P L
Sbjct: 379 LAKRFQR-------------GKANLEDVVRAYQVIIR-LPGFMGTLEGVMDEAYRDP-LD 423
Query: 683 RIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+ P+ S+ L K E +D D D NH+
Sbjct: 424 ETYTTPLRGLSNSLAKLAEMVETTVDLDALD--NHE 457
>gi|291280540|ref|YP_003497375.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1]
gi|290755242|dbj|BAI81619.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1]
Length = 851
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 156/281 (55%), Gaps = 27/281 (9%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
+ I+ +D+L SF+ A I + P + N +KI HP
Sbjct: 537 NKIALLDMLLSFSEAA-----------IRYEYTKPHINDSNE---IKIIEGRHPVIEQTM 582
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
VPNDI + + D R L++TGPNM GKST LR T L ILA G FVP + +
Sbjct: 583 NEPFVPNDIFINTEKD----RLLIITGPNMAGKSTYLRMTALITILAHTGSFVPAKEANI 638
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
L D IFTR+GA+D + GESTF+VE ETA++L AT+ SL+ILDE+GRGTST+DG +I
Sbjct: 639 GLVDRIFTRIGASDNLAKGESTFMVEMVETANILNNATEKSLIILDEIGRGTSTYDGLSI 698
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+AV + + I + LFATHYH LT + K+ + + + E++F
Sbjct: 699 AWAVAEYISKYIKAKTLFATHYHELTD---------IALTTYGVKNYTIEVREWNDEVIF 749
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
L ++ G+ SYG+ VA +AG+P++V+ A+ ++K+
Sbjct: 750 LRKIIPGSADRSYGIHVAKLAGLPEEVINRANEILATLEKN 790
Score = 86.3 bits (212), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 166/384 (43%), Gaps = 64/384 (16%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K++ KQY+ VK +Y D ++FF++G FYE+++ DA K L +T +
Sbjct: 7 KLTPMMKQYYEVKEKYPDCIIFFRMGDFYEMFDDDAIDASKILGIALTSRNKNDDNPIPM 66
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV--D 383
G+ ++KL++ G KV EQLE AK ++ R ++ VVTP+T + +
Sbjct: 67 CGVPYHSYQTYLDKLISAGKKVAICEQLEDPATAKG-----IVKRGVIRVVTPATVIEEE 121
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
D LL+ N Y A +D + +++ + + +++ +
Sbjct: 122 SIKSADFNFLLSFYYTNN-------TYFIALIDTSTGDLFI------SETKNIFSVIDKW 168
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
PKE+I K L +S E T M + D +FN
Sbjct: 169 DPKEIIGNKDLNIKNVNFQLLNYS----TFEKTVKMTIFD---------------HFNIQ 209
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY--KVYRDCL------ 555
S S ++N + AL +L L+LD L+ L ++Y D +
Sbjct: 210 SFT-SIGIDNTNNAIPIYFAL----KYLDSLLLDVTLKKPVYLNLNDELYLDSIAVNTLE 264
Query: 556 ----RMDG---QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
+ DG TL+ L+ C T+ G+RLL+ + PL+D+ I R +VVE + + E+
Sbjct: 265 LVKNQRDGSVKNTLFQVLNFCKTALGERLLKFTLLRPLRDLNKIKYRQNVVEAFIFDQEL 324
Query: 607 VMVVAQYLRKLPDLERLLGRVKAR 630
+ L+ + D+ER+ R+ A+
Sbjct: 325 KNNIQNLLKNVYDIERIASRLSAK 348
>gi|402080962|gb|EJT76107.1| DNA mismatch repair protein MSH3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1148
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 160/294 (54%), Gaps = 24/294 (8%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ + +++ +D L A A++ +P ILP S P + G HP A
Sbjct: 833 DAVASLATLDCLLCLAQVAALP--GYSKPTILPSSHPPTISITEG---------RHPIAE 881
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
G +P L + P L+TGPNMGGKS+ +RA L V+LAQ+G +VP
Sbjct: 882 HTLPGGYIPFTTTLAAPA----PLAHLVTGPNMGGKSSFVRALALVVLLAQVGSYVPATA 937
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
L+L+D I+TR+GA+D + GESTF+VE ETA++L+ AT SLV+LDELGRGTST DG
Sbjct: 938 ASLTLSDAIYTRMGASDNLFAGESTFMVEVGETAAILRAATPRSLVLLDELGRGTSTHDG 997
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG--- 979
AIA+AV +V C LF THY L + ++++ F S+ + G
Sbjct: 998 AAIAHAVLDHVVRETRCLTLFITHYQSLARVAEGLGRDLVRNVHMRFTSSRAEKAGGDTA 1057
Query: 980 ------DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
D+E+ FLY +T G SYGL VA +A +P+K+++ A+ + M+ +
Sbjct: 1058 DAEDDVDEEITFLYEVTDGVAHRSYGLNVARLARIPRKILDVAARKSRHMEDEV 1111
Score = 76.6 bits (187), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 65/418 (15%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLS 318
++ + Q+ ++K ++MD +L +VG + + DA I KEL D + +
Sbjct: 221 LTPMEMQFLDIKRKHMDTVLIVEVGYKFRFFGEDARIAAKELSIVCVSGKFRYDEHSSEA 280
Query: 319 GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVVT 377
+ + I + ++LVA G+KVG + Q+ET+ KA + N+ RKL NV T
Sbjct: 281 HLDRFASASIPVHRLPVHAKRLVAAGHKVGVVRQVETAALKKAGDNRNAPFVRKLTNVYT 340
Query: 378 -----------PSTTVDGTIGPDAVHLLAIKEG---NCGPDNGSVVYGFAFVDCAALRVW 423
P+ T +G+ P +LL I E G D V G V A +
Sbjct: 341 KGTYIDDDLGEPAPTTEGSGAPAGGYLLCITESAAKGAGTDE-KVDVGLIAVQPATGDII 399
Query: 424 VGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA----------- 472
+ D L L+ +SP E++ L + +K +R S GSA+
Sbjct: 400 YDSFEDGFMRNELETRLLHISPCELLIVG-DLSRATEKLVRHLS-GSASNVFGDRTRVER 457
Query: 473 ------LELTPAMAVTDFLDA-----SEVKKLVQLNGYFNGSSSPWSKALENVMQH--DI 519
+ + VT F S ++ V+L G P + L ++ H +
Sbjct: 458 VAKGKTMAAEASSHVTQFYAGKLKGNSHDERAVELLNKVLGLPEPVTLCLSAMITHLTEF 517
Query: 520 GFSALGGLISHLSRL-MLDDVLRNGDIL-PYKVYRDCL-RMDGQTLY--LDSCVTSSGKR 574
G + L + +L NG L +VYR+ + +L+ LD T G+R
Sbjct: 518 GLEHIFDLTKYFQSFSTRSHMLINGTTLESLEVYRNQTDHSEKGSLFWALDKTKTRFGQR 577
Query: 575 LLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL-----PDLERLLGRV 627
+LR W+ PL D +++R+ VE L + A L++L DLER L R+
Sbjct: 578 MLRKWLGRPLLDKGRLDDRVAAVEELFEKRATAH--ADKLQRLVASIKTDLERSLIRI 633
>gi|336273216|ref|XP_003351363.1| MSH2 protein [Sordaria macrospora k-hell]
gi|380092884|emb|CCC09637.1| putative MSH2 protein [Sordaria macrospora k-hell]
Length = 934
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 172/307 (56%), Gaps = 28/307 (9%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L+ + AS + V+ ++ + DV+ SFA + + + RP I P+
Sbjct: 563 TQSSLVNEVVGVASSYCPVLERLAAVLAHLDVIVSFAHCSVHAPTSYVRPKIHPRGTGRT 622
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLG-EDSDDCLPRTLLLTGPNMGGKST 840
V + P +++ ++ + ND+ L EDS L++TGPNMGGKST
Sbjct: 623 VLTEARHPCMEV----------QDDVTFITNDVTLSREDSS-----FLIITGPNMGGKST 667
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R + ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+
Sbjct: 668 YIRQIGVIALMAQIGCFVPCSSAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILK 727
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT +SL+I+DELGRGTST+DG+ +A+A+ +V+ I C LFATH+H LT +P+V
Sbjct: 728 SATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPNV 787
Query: 961 TLQHMACAFK-------SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H+ ++SE K +E+ LY+++ G C +S+G+ VA + P+KVV
Sbjct: 788 KNLHVTAHISGTDADTDADSEK-EKKKREVTLLYKVSPGVCDQSFGIHVAELVRFPEKVV 846
Query: 1014 EAASHAA 1020
A A
Sbjct: 847 RMAKRKA 853
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 22/158 (13%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T G RLL W+ PL + E I R +VE ++E+ + ++LR +PDL R
Sbjct: 319 LNHCKTPVGSRLLSQWLKQPLMNAEEIEKRQQLVEAFANDTELRQTMQEEHLRSIPDLYR 378
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGHIIPS 680
L R + GK L+ V+ + +++ G ++ +M E + P
Sbjct: 379 LSKRFQR-------------GKATLEDVVRAYQVVIRVPGFIGTLEGVM---DEAYRDP- 421
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
L ++ + + SD L K E +D D D NH+
Sbjct: 422 LDEVYTNKLRELSDSLVKLQEMVETTVDLDALD--NHE 457
>gi|425054250|ref|ZP_18457763.1| DNA mismatch repair protein MutS [Enterococcus faecium 505]
gi|403036518|gb|EJY47866.1| DNA mismatch repair protein MutS [Enterococcus faecium 505]
Length = 881
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISTADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 84/469 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ L E LR+ +G L F +E+++ N F+ +S
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLV---------FSQQNEMEE----NAEFSFLTSELV 217
Query: 509 KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD---------- 558
LE A G L+++LS + + Y+ L+MD
Sbjct: 218 DPLEK--------EATGKLLTYLSVTQKRSLAHIQKAVEYQP-DHFLKMDYYSKFNLELS 268
Query: 559 ---------GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + +
Sbjct: 269 QSIRTGKKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERI 328
Query: 609 VVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--M 665
+ L K+ DLERL GRV V I L K +QV + L++G+
Sbjct: 329 DLQSALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQ 383
Query: 666 DLLMLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
LL M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 384 SLLSEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|269926438|ref|YP_003323061.1| DNA mismatch repair protein MutS [Thermobaculum terrenum ATCC
BAA-798]
gi|269790098|gb|ACZ42239.1| DNA mismatch repair protein MutS [Thermobaculum terrenum ATCC
BAA-798]
Length = 930
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 193/386 (50%), Gaps = 45/386 (11%)
Query: 652 KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
KVFG ++ R + H++P + K I G ++F+T+ ++S
Sbjct: 481 KVFGYYIEVTRPNL----------HLVPR-EYVRKQTISTG----ERFVTEALKEVESRI 525
Query: 712 PDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP 771
++ + L E +++L L + ++ +D L + A AS RP
Sbjct: 526 TRAEDA-IERLQNEAIALLRSLVSANTRRLLATAQLLAEMDALVALAEVASRCGWV--RP 582
Query: 772 LILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLL 830
L+ + V++I+ HP G VPND +G + PR LL+
Sbjct: 583 LV------------DDSDVIEIRNGRHPVVESSLEGERFVPNDCYIGGN----WPRVLLI 626
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNMGGKST LR L V+LAQ+G FVP E + L D IFTR+GA D + G STF+V
Sbjct: 627 TGPNMGGKSTYLRQVALIVLLAQIGSFVPAESARIGLVDRIFTRVGAHDDLARGASTFMV 686
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950
E ETA++L AT+ SLV+LDE+GRGTST+DG AIA AV + +R+ R LFATHY L
Sbjct: 687 EMVETATILNGATERSLVVLDEIGRGTSTYDGMAIAQAVLEDIHDRVRARTLFATHYLEL 746
Query: 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
T P H++ A + + +VFLY + GA +YG+ VA +AG+P
Sbjct: 747 TTVAKKLPSAQNVHVSVAEERD---------HIVFLYSVRPGAADRAYGIHVARLAGLPP 797
Query: 1011 KVVEAASHAALAMKKSI-GESFKSSE 1035
V A + A+ GES + E
Sbjct: 798 WVAGRAENILHALSAGTEGESTRDKE 823
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 93/191 (48%), Gaps = 23/191 (12%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG-----V 320
A + + S++QY +K +Y +L +++G FYE ++ DA + + D ++TL+
Sbjct: 18 AARDLVPSRRQYLELKRKYPHAILLYRMGDFYEAFDDDARVVAR--DARVTLTSRTFGRS 75
Query: 321 GKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
G+ G+ ++ + +L+ G+ V EQ+ SE K ++ R++ V+TP T
Sbjct: 76 GRVPMAGVPHHALNYYLSRLLNAGHTVAIAEQM--SEPGKG-----LVEREVTRVLTPGT 128
Query: 381 TVDGTIGP--DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
V+ + P + +L A+ D G+ + G A+VD + + + + + L
Sbjct: 129 VVESALLPAGENRYLAAVY------DVGARI-GIAWVDVSTGEFRLMELRGEDASERLQE 181
Query: 439 LLMQVSPKEVI 449
L ++SP E +
Sbjct: 182 ELARISPAECL 192
Score = 43.1 bits (100), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D T G R +R I PL+D++ I R D++E L++ +V +A L ++ DLER
Sbjct: 308 VDQTSTPMGSRAMRRLINTPLRDLQEIRRRQDIIEPLVQMPQVRARIANQLVQIGDLERA 367
Query: 624 LGR 626
+ R
Sbjct: 368 VSR 370
>gi|300362260|ref|ZP_07058436.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03]
gi|300353251|gb|EFJ69123.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03]
Length = 857
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 44/345 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHA-------ISCIDVLRSFAVTAS 762
P+ + H+ L+AE S +E LF++ + I A ++ +DVL FA +
Sbjct: 496 PELKEHESLILEAEAKSTGLEYDLFVKLRENVKKYIPALQKLAKQVASLDVLIDFATVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQD---NGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGE 818
+N VR D + + + G HP G +PND+ + +
Sbjct: 556 ---------------QNNYVRPDFTVDKQEINVVNG-RHPVVEQVMTAGSYIPNDVKMDQ 599
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
D+D L+TGPNM GKST +R L I+AQ+GCFVP + L + D IFTR+GA
Sbjct: 600 DTD-----IFLITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTRIGAA 654
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D +++G+STF+VE +E LQ AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++
Sbjct: 655 DDLISGQSTFMVEMSEANDALQHATKRSLILFDEIGRGTATYDGMALAGAIVKYLHDKVG 714
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
+ LFATHYH LT TL+H+ +E K L+FL+++ G +SY
Sbjct: 715 AKTLFATHYHELTD-----LDQTLKHLKNIHVGATEENGK----LIFLHKILPGPADQSY 765
Query: 999 GLQVAVMAGVPQKVV-EAASHAALAMKKSIGESFKSSEQRSEFSS 1042
G+ VA +AG+P+KV+ EA + ++ GE +SEQ F++
Sbjct: 766 GIHVAQLAGLPRKVLREATTMLKRLEQQGAGELQPASEQLDLFTA 810
Score = 109 bits (273), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 166/375 (44%), Gaps = 43/375 (11%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K + KQY+ +K QY D LF++VG FYEL+E DA G + L+ +T K +
Sbjct: 2 AKKDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRS-NKTKN 60
Query: 326 ----VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +D V LV +GYKV EQLE ++AK ++ R ++ ++TP T
Sbjct: 61 PIPMAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAKG-----MVKRGIIQLITPGTM 115
Query: 382 VDGT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ D+ +L ++ N G +G A+ D + + + D +
Sbjct: 116 MQERPDQAKDSNYLTSVISTNSG-------FGLAYSDLSTGETFSTHLTD---FEGVANE 165
Query: 440 LMQVSPKEVIYE------NRGLCKEAQKALRK-FSAGSAALELTPAMAVTDFLDASEVKK 492
L+ + +EV+Y N+ K+A + + S E+ + + D +E+K
Sbjct: 166 LLSLQTREVVYNGHLTEANKDFLKKANITISEPVKVESEHAEI--SYVAQNLTDDAEIKA 223
Query: 493 LVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR 552
QL Y S+ S A V Q L +SH + L+ + K +
Sbjct: 224 TKQLVAYL-LSTQKRSLAHLQVAQSYEPTQYLQ--MSHTVQTNLELI---------KSAK 271
Query: 553 DCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
+M LD T+ G RLL+SWI PL V IN R ++V+ L+ + V
Sbjct: 272 TSKKMGSLFWLLDKTSTAMGGRLLKSWIERPLLSVTEINRRQEMVQALLDDYFTREKVID 331
Query: 613 YLRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 332 SLKGVYDLERLTGRI 346
>gi|156743470|ref|YP_001433599.1| DNA mismatch repair protein MutS [Roseiflexus castenholzii DSM 13941]
gi|189083187|sp|A7NPT5.1|MUTS_ROSCS RecName: Full=DNA mismatch repair protein MutS
gi|156234798|gb|ABU59581.1| DNA mismatch repair protein MutS [Roseiflexus castenholzii DSM 13941]
Length = 1088
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 159/301 (52%), Gaps = 29/301 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
+ DL+ + + E + I+ IDV + A A G RP + ++
Sbjct: 721 LIDLERRAFARICETLAGAGVRLLRTARTIATIDVFAALAEAAV--RGRYVRPELYDDTR 778
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
L+I G HP +PNDI + ++ L+TGPNM GK
Sbjct: 779 ------------LRIIGGRHPVVEQTLDETFIPNDIEMDTETRQIC----LITGPNMSGK 822
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST+LR L ++AQ+G FVP + + + D IFTR+GA D I TG STF+VE TETA++
Sbjct: 823 STVLRQVALIALMAQIGSFVPADAAEIGVVDRIFTRIGAQDDIATGRSTFMVEMTETAAL 882
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFAS 956
L ++T SL+ILDE+GRGTST+DG AIA AV + R+ CR LFATHYH LT +
Sbjct: 883 LAQSTHRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCRTLFATHYHELTDLERT 942
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P + HMA ++ D +VFL+ L G SYG+ VA +AG+PQ V+ A
Sbjct: 943 LPRLKNYHMAA---------TEQDGRVVFLHELRPGGADRSYGIHVAELAGIPQPVIRRA 993
Query: 1017 S 1017
+
Sbjct: 994 T 994
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 91/435 (20%), Positives = 172/435 (39%), Gaps = 90/435 (20%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG------- 321
++ A +QY ++K+ + D +L +++G FYE ++ DA++ L+ +T
Sbjct: 21 ELHAWYRQYRSLKAAHPDAILLYRLGDFYETFDDDAKLVADLLEVTLTYKEFASQKGRDQ 80
Query: 322 --KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS-----------------EQAKAR 362
+C GI ++ V +LV GY+V EQ+ + EQ
Sbjct: 81 KQRCPMAGIPYHAVEGYVARLVGAGYRVAIAEQMTETPSSRTDTRPRSIFAAGIEQTALI 140
Query: 363 HTNSVISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAAL 420
+ ++ RK+V ++TP T ++ + P +L A+ D+G + G A+ D +
Sbjct: 141 GGHKMVERKVVRIITPGTIIESGMLPAERNNYLAALIA-----DHGRI--GLAYADLSTG 193
Query: 421 RVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA 480
+ + + L +++P E++ +R + L SA LE
Sbjct: 194 EFAAIEFSGERAAQQAQGELARLNPAEILVPDRADLR-----LPGLEPSSARLEQDLEFL 248
Query: 481 VTD----FLDASEVKKLVQLNG---YFNGSSSPWS------KALENVMQHDIGFSALGGL 527
+ L + + V+ + +G + WS + + + H G +L G
Sbjct: 249 TREERERVLPGERIARRVERENHARWAHGHVTAWSEQRWDLRNARDTLLHQFGVHSLAGF 308
Query: 528 --------------ISHLSRLMLDDVLRNGDILPYKVYR--DCLRMDGQTL--------- 562
I +R + N + +VY D + +D QT
Sbjct: 309 GLADRPLAIRAAGAIVQYARETQQGTVAN--LRAIRVYTPGDAMVLDPQTQRNLELLEGN 366
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
LD T G RLLR WI PL D+ + R D V++ + ++ + V +
Sbjct: 367 SGTTRGSLIGVLDQTRTPMGARLLRRWISQPLCDLARLRARHDAVDHFVNDAILRASVRE 426
Query: 613 YLRKLPDLERLLGRV 627
LR++ D+ER++ R+
Sbjct: 427 TLRRVGDMERVVNRI 441
>gi|221635855|ref|YP_002523731.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159]
gi|221157957|gb|ACM07075.1| DNA mismatch repair protein MutS [Thermomicrobium roseum DSM 5159]
Length = 881
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 138/225 (61%), Gaps = 14/225 (6%)
Query: 793 IKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
I+G HP G P VPND LG D PR LL+TGPNMGGKST LR L V+L
Sbjct: 591 IEGGRHPVVEVLLDGQPFVPNDCQLGGDG----PRLLLVTGPNMGGKSTYLRQVALIVLL 646
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+G FVP + L D IF R+GA D + G+STF+VE ETA++L++ATQ SLVILD
Sbjct: 647 AQIGSFVPAARARIGLVDRIFCRVGAHDDLPGGQSTFMVEMVETATILRQATQRSLVILD 706
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
E+GRGT+T DG AIA+AV L +R+ R LFATH+ LT A P V H+A
Sbjct: 707 EVGRGTATQDGLAIAWAVLEDLHDRVGARTLFATHFLELTALEAELPGVANVHVAAM--- 763
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ D +VFLYR+ GA +YG+ VA +AG+P V + A
Sbjct: 764 ------EQDGRVVFLYRVRPGAADRAYGIHVARLAGLPPWVADRA 802
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 14/121 (11%)
Query: 273 SQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGV-----GKCRQVG 327
S++QY +K+ Y +L +++G FYE ++ DA I + D +ITL+ G+ G
Sbjct: 26 SRRQYLRLKAHYPHAILLYRLGDFYEAFDEDARIVAR--DARITLTSRSFGRNGRVPMAG 83
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG 387
I ++ + +L+A G+ + EQ+ SE K ++ R + V+TP T + +
Sbjct: 84 IPHHALNHYLARLLAAGHTIAIAEQV--SEPGK-----GLVERAVTRVLTPGTVAEAALL 136
Query: 388 P 388
P
Sbjct: 137 P 137
>gi|444315884|ref|XP_004178599.1| hypothetical protein TBLA_0B02380 [Tetrapisispora blattae CBS 6284]
gi|387511639|emb|CCH59080.1| hypothetical protein TBLA_0B02380 [Tetrapisispora blattae CBS 6284]
Length = 959
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 166/297 (55%), Gaps = 18/297 (6%)
Query: 728 SILIELFIEKASQWSEVIHAISC----IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
++L++ + +S V+ +S IDVL +FA +S + RP +
Sbjct: 590 AVLVKEIVNITLTYSPVLDRLSMVLANIDVLSAFAHVSSYAPIPYIRP---------TMH 640
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
+ +K HP ++ + ND+ L S D L ++TGPNMGGKST +R
Sbjct: 641 GFDSERRTYLKNSRHPVIEMQDDITFISNDVDLNNGSSDFL----IITGPNMGGKSTYIR 696
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ ++AQ+GCFVPCE +++ D I R+GA D + G STF++E ET+S+L+ AT
Sbjct: 697 QVGVITLMAQIGCFVPCEEADIAVVDAILCRVGAGDSQLKGVSTFMIEMLETSSILKNAT 756
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+SL+I+DELGRGTST+DG+ +A+A+ + +I C LFATH+H LT + P+V
Sbjct: 757 SNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTSLADNLPNVKNM 816
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ + E++S D ++ LY++ G +S+G+ VA + PQK+++ A A
Sbjct: 817 HVVAHIEQGDESHSNSD-DITLLYKVEPGISDQSFGIHVAEVVNFPQKIIKMAKRKA 872
Score = 50.4 bits (119), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T++G RLL W+ PL D+ I R D+V+YL+ E+ ++ YL +PD+ R
Sbjct: 339 LNHCKTNAGSRLLNEWLKQPLTDLSEILKRHDLVDYLIDQLELRQILQTDYLLGIPDIRR 398
Query: 623 LLGRV 627
L ++
Sbjct: 399 LAKKL 403
>gi|396478621|ref|XP_003840576.1| similar to DNA mismatch repair protein msh3 [Leptosphaeria maculans
JN3]
gi|312217148|emb|CBX97097.1| similar to DNA mismatch repair protein msh3 [Leptosphaeria maculans
JN3]
Length = 1139
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 162/298 (54%), Gaps = 23/298 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E K Q + + +++ +D L S A AS +P + + V+ D
Sbjct: 830 LLEAISSKYQQLRDCVSSLATLDALLSLATLAS-------QPGYVKPTFTDNVQID---- 878
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
I G HP VPND+ L D R+LL+TGPNMGGKS+ +R+ L
Sbjct: 879 ---ITGGRHPMVEQILLDSYVPNDLHLSHDHT----RSLLITGPNMGGKSSYVRSAALIA 931
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+ Q+G +VP L + D +FTR+GA D ++ GESTF+VE +ETA +L+ AT SLVI
Sbjct: 932 IMGQIGSYVPATQAKLGMLDAVFTRMGAFDNMLQGESTFMVELSETADILKSATPRSLVI 991
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGTSTFDG AIA AV +V + LF THY L K P L+++ F
Sbjct: 992 LDELGRGTSTFDGVAIAEAVLDHVVCDLKSLTLFITHYQHLAKLEKRFPGGQLKNVHMRF 1051
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ + G +E+VFLY G SYGL VA +A VP+KV+ A + +++S+
Sbjct: 1052 EERA-----GGKEVVFLYEAAEGTSHRSYGLNVARLARVPEKVIAVAEVKSRELEESM 1104
Score = 64.3 bits (155), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 95/432 (21%), Positives = 168/432 (38%), Gaps = 89/432 (20%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITLS 318
++ + QY +K +++D ++ +VG Y+ + DA KEL D + +
Sbjct: 229 LTPMEMQYLEIKRKHLDTVIVMEVGYKYKFFGEDARTASKELGIVCIPGKFRYDEHPSEA 288
Query: 319 GVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVT 377
+ + + V++LV +KVG + Q+ET+ +A + N+ RKL N+ T
Sbjct: 289 HLDRFASASFPTHRLQVHVKRLVQANHKVGVVRQIETAALKAAGNNRNAPFVRKLTNLYT 348
Query: 378 PSTTVDGTIGPDAV------------HLLAIKEGNC---GPDNGSVVYGFAFVDCAALRV 422
T VD G + +LL I E N G D V G V A +
Sbjct: 349 KGTYVDDVEGLETSTAGAGAGAQSTGYLLCITETNAKGWGSDE-KVHVGLVAVQPATGDI 407
Query: 423 WVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT 482
D + + ++ ++P E + L K K ++ SA +
Sbjct: 408 IYDDFEDGFMRSEIETRMLHIAPAEFLVVG-DLSKATDKLIQHLSASKTNV--------- 457
Query: 483 DFLDASEVKKLVQ-----------LNGYFNG----------SSSPWSKALENVMQHDIGF 521
F D S V+++ + ++ ++ G S L+ V Q
Sbjct: 458 -FGDRSRVERVEKPKTMAAQAYSHISNFYAGKMKSSQGGDSESDQQGAILDKVHQLSEHV 516
Query: 522 S-ALGGLISHLSRLMLDDV----------------LRNGDIL-PYKVYRDCLRMDGQ-TL 562
+ L +I++L+ L+ V L NG+ L ++Y++ + +L
Sbjct: 517 TICLSAMITYLTDYGLEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNATDYTAKGSL 576
Query: 563 Y--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
+ +D T G+RLLR WI PL D + R+ VE L + + V L
Sbjct: 577 FWTMDRTKTRFGQRLLRKWIGRPLIDKARLEERIAAVEELKEGENTIPV--------DKL 628
Query: 621 ERLLGRVKARVQ 632
+ LLGR+K ++
Sbjct: 629 KFLLGRIKTDLE 640
>gi|418069533|ref|ZP_12706810.1| DNA mismatch repair protein MutS [Pediococcus acidilactici MA18/5M]
gi|357536064|gb|EHJ20095.1| DNA mismatch repair protein MutS [Pediococcus acidilactici MA18/5M]
Length = 894
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 29/299 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TDL+ E + E E+ + + ++ +DVL+SFAV + Q
Sbjct: 515 TDLEYELFKKIRETIKEQIERLQNLAKQVAELDVLQSFAVVSEEY-----------QFVK 563
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P + + + ++IK HP G VPNDIL+ +D++ LL+TGPNM GK
Sbjct: 564 PTMTESHE---IEIKAGRHPVVEKVMGHQSYVPNDILMNQDTE-----ILLITGPNMSGK 615
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L VI+AQ+GCFVP E L + D IFTR+GA D +++G+STF+VE E
Sbjct: 616 STYMRQLALTVIMAQMGCFVPAEEATLPIFDQIFTRIGAADDLISGQSTFMVEMQEANRA 675
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ T +SL++ DE+GRGT+T+DG A+A ++ + + ++ + LF+THYH LT
Sbjct: 676 LKDGTANSLILFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTHYHELT------- 728
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L K+ + D LVFL+++ G +SYG+ VA +AG+P ++ AS
Sbjct: 729 --ALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIHVAKLAGMPDSLLARAS 785
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 195/459 (42%), Gaps = 82/459 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K QY D LF+++G FYEL+ DA G + L+ +T + G+
Sbjct: 12 RQYMEIKKQYPDAFLFYRIGDFYELFYDDAIKGSQLLELTLTARSKNADDPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT D DA
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPKAAKG-----MVKREVIQLVTPGTTTDQK-AEDA- 124
Query: 392 HLLAIKEGN----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA--ALGALLMQVSP 445
KE N D + YGFA+ D + + V ++D S A+G ++
Sbjct: 125 -----KENNYLTAVSFDAATKKYGFAYTDLSTGELKVAILDDIESVVNEAVGLRTREIVA 179
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA--VTDFLDASEVKKLVQLNGYFNGS 503
+ E+ G E K L + +E++ ++ + D V+ + QL Y +
Sbjct: 180 DQYFVEHFG---ERFKELNILVSQQNDVEISAELSYLIQDLTSPIAVQVVKQLLMYVQVT 236
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQT 561
++ + ++ F + H S+ L L ++R G + G
Sbjct: 237 QKRNLAHMQKAIAYEPSFYLR---MDHASKYNLELTRLIRTG------------KKQGTL 281
Query: 562 LYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
L+L D T+ G RLL+ W+ PL + IN R V+ L+++ + + L K+ DL
Sbjct: 282 LWLLDETKTAMGGRLLKQWLDRPLIRKDAINARQSRVQVLLEHFFERSNLQEELTKVYDL 341
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG---LRIAMDLLMLMHKEGHI 677
ERL GRV FG+ V G +++ LL + K H+
Sbjct: 342 ERLAGRV-------------------------AFGN-VNGRDLIQLKTSLLQI-PKIRHV 374
Query: 678 IPSLSRIFKPPIFDGS----DGLDKFLTQFEAAIDSDFP 712
+ L P+FD + D + + EAAID D P
Sbjct: 375 LAELD----DPVFDEALTRLDPVSEIADLIEAAIDEDAP 409
>gi|386392603|ref|ZP_10077384.1| DNA mismatch repair protein MutS [Desulfovibrio sp. U5L]
gi|385733481|gb|EIG53679.1| DNA mismatch repair protein MutS [Desulfovibrio sp. U5L]
Length = 880
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 154/258 (59%), Gaps = 21/258 (8%)
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLT 831
++ + P +RQD G + I+ HP G G +PND+ + DD R LL+T
Sbjct: 563 VIGEWTRPELRQDLG---ITIRAGRHPVIEAAQGIGNYIPNDVAV----DDA-ARLLLIT 614
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNM GKST+LR T L ILAQ+G FVP V+ L D +F R+GA+D + G+STF+VE
Sbjct: 615 GPNMAGKSTVLRQTALIAILAQIGSFVPATQAVIGLVDRVFCRVGASDNLARGQSTFMVE 674
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER---INCRLLFATHYH 948
ETA +L++A + SLVILDE+GRGT+TFDG A+A+AV L R R LFATHYH
Sbjct: 675 MMETARILRQAGKRSLVILDEIGRGTATFDGLALAWAVVEDLAGREGGQGVRTLFATHYH 734
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT P L++ A K KGD ++FL RL G SYG++VA +AGV
Sbjct: 735 ELTALEGRLP--GLRNFNIAVKE-----WKGD--IIFLRRLLPGPADRSYGVEVARLAGV 785
Query: 1009 PQKVVEAASHAALAMKKS 1026
P+ VV+ A L +++S
Sbjct: 786 PRNVVKRARELLLTLEQS 803
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 163/386 (42%), Gaps = 60/386 (15%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV--- 326
M+ +QY VK ++ LL +++G FYE++ DAE +EL +T G V
Sbjct: 1 MTPMLEQYLRVKGEHPGALLLYRMGDFYEMFFEDAETAAQELQITLTSRNPGAEAPVPMC 60
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGT 385
G+ ++ + +L+ +G+KV +Q+E + AK ++ R + V+TP T V +G
Sbjct: 61 GVPHHAVEGYIAQLLEKGFKVAVCDQIEDPKLAK-----GLVKRAVTRVLTPGTAVEEGN 115
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+ + LA + G G A+VD + W G + DA A L +++ P
Sbjct: 116 LRAKEHNFLAALFFDADERAG----GLAWVDFSTGE-WSGLFSRDA--ARLWQWTVKIGP 168
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
+E+ L + + + F + P DF A K+++
Sbjct: 169 REL------LLPDGLEPPKDFPKEGVQISRFPPRPHFDF--AGGRDKVLK---------- 210
Query: 506 PWSKALENVMQHDIG-----FSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL----- 555
++A+ ++ D+G A+G L+++L+ + ++ P + R L
Sbjct: 211 --AQAVADLAALDLGDKPQLVRAMGALLTYLAATQMRELGHLSPFRPVNLGRHMLLDEVT 268
Query: 556 --------RMDG----QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
R+DG TL+ LD +T G RLL S + P D+ I V L+
Sbjct: 269 EKNLEIFRRLDGGKGVGTLWHVLDRTMTPMGGRLLESRLRQPWLDLGPILETQAAVADLV 328
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L + DLERL R+
Sbjct: 329 TDEGRRTGLREALSGVYDLERLTTRI 354
>gi|220929119|ref|YP_002506028.1| DNA mismatch repair protein MutS [Clostridium cellulolyticum H10]
gi|254766623|sp|B8I2Q5.1|MUTS_CLOCE RecName: Full=DNA mismatch repair protein MutS
gi|219999447|gb|ACL76048.1| DNA mismatch repair protein MutS [Clostridium cellulolyticum H10]
Length = 873
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 177/320 (55%), Gaps = 41/320 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + T L AE I +E LF+E + +E + A++ IDVL S A A
Sbjct: 508 PELKEIEDTILGAEEKIIQLEYSLFVEIKEKIAEQLSRIKSTARALAEIDVLASLAEVAD 567
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDS 820
P V + +++ + HP + + G VPND +L +
Sbjct: 568 REGYC-----------KPEVSLSDKIEIIEGR---HPVVEKMTDKSGF-VPNDTVLDMEE 612
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
D R ++TGPNM GKST +R T L V++AQ+G FVP + L D IFTR+GA+D
Sbjct: 613 D----RLAIITGPNMAGKSTYMRQTALIVLMAQIGSFVPAATAKIGLVDRIFTRVGASDD 668
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERIN 938
+ +G+STF+VE +E A++L AT+ SL++LDE+GRGTSTFDG +IA+AV +V E++
Sbjct: 669 LASGQSTFMVEMSEVANILINATKRSLLVLDEIGRGTSTFDGLSIAWAVIEYIVNKEQLG 728
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
CR LFATHYH LT+ P + ++ K E+ ++FL ++ G SY
Sbjct: 729 CRTLFATHYHELTELEGKLPGI--KNYCITVKEKGED-------VIFLRKIIRGGADGSY 779
Query: 999 GLQVAVMAGVPQKVVEAASH 1018
G+QVA +AGVPQ V++ A
Sbjct: 780 GIQVAKLAGVPQSVIDRAKE 799
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 178/385 (46%), Gaps = 66/385 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISES--- 331
+QY ++K QY D +LFF++G FYE++ DAE+ +EL+ ITL+G R G+ E
Sbjct: 9 QQYLDIKEQYKDCILFFRLGDFYEMFFSDAELASRELE--ITLTG----RDCGLEERAPM 62
Query: 332 ------GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
D+ + +LV++GYKV EQ+E AK ++ R +V VVTP T D T
Sbjct: 63 CGVPFHAADNYIARLVSKGYKVAICEQVEDPALAKG-----IVKRDVVKVVTPGTVTDIT 117
Query: 386 IGPDAV--HLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
+ + +L+++ K GN YG A VD + I + L + +
Sbjct: 118 MLDERKNNYLMSVYKNGN--------FYGLASVDITTGDFYATRITWGNTRGKLLDEIAK 169
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
P E+I N L + ++ ++ V+ F + S + +
Sbjct: 170 YLPSEIIVNNE---------LNSDNELTSEIKQRFNTYVSTFEETS-----FEYGNSMDI 215
Query: 503 SSSPWSKALENVMQHDIGFSALGGL-----------ISHLSRL--------MLDDVLRNG 543
++ + K N+ ++DI +A G L +SH+ + M+ D
Sbjct: 216 LANHFEKQTLNIQEYDIAVNASGALLKYLESTQKVNLSHIQKFNSYALEEYMILDASSRR 275
Query: 544 DILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
++ + R+ + LD +TS G RLLR WI PL + I+ RLD VE L KN
Sbjct: 276 NLELTETMREKSKKGSLLWVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLDAVEEL-KN 334
Query: 604 SEVVMVVA-QYLRKLPDLERLLGRV 627
+V V A + L+++ D+ERL+G+V
Sbjct: 335 KFMVRVEARELLKRVYDIERLMGKV 359
>gi|219850607|ref|YP_002465040.1| DNA mismatch repair protein MutS [Chloroflexus aggregans DSM 9485]
gi|219544866|gb|ACL26604.1| DNA mismatch repair protein MutS [Chloroflexus aggregans DSM 9485]
Length = 968
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 142/241 (58%), Gaps = 18/241 (7%)
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P +R D VL+IK HP G + ND+ L D D+ + L++TGPNM GK
Sbjct: 663 QPTLRTDR---VLRIKQGRHPVVERTLGEPFIGNDVDL--DGDNV--QILIITGPNMAGK 715
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST LR L ++AQ+G FVP + + L D IFTR+GA D I TG+STF+VE TETA++
Sbjct: 716 STFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMTETAAL 775
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFAS 956
L ++T SL+ILDE+GRGTST+DG AIA AV + R+ CR LFATHYH LT
Sbjct: 776 LMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHNEPRLGCRTLFATHYHELTALDTE 835
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P V HMA + D +VFL+ L G SYG+ VA +AG+P V+ A
Sbjct: 836 LPRVRNFHMAAVER---------DGRVVFLHELRPGGADRSYGIHVAELAGIPASVIRRA 886
Query: 1017 S 1017
+
Sbjct: 887 N 887
Score = 67.0 bits (162), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ--- 325
++ A +QY +K + D +L F+ G FYE ++ DA++ + LD +T ++
Sbjct: 5 ELHAWYRQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDVTLTRKEYAVDKRAPK 64
Query: 326 ---------VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAK---------------A 361
G+ +D V +LVARGY+V EQL +E +
Sbjct: 65 DQQKLYAPMAGMPYHAVDRYVSELVARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPL 124
Query: 362 RHTNSVISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+ ++ R +V ++TP T +D + PD +L A+ + G V G A+ D +
Sbjct: 125 ESSGKMVQRAIVRIITPGTVIDPAMLPDRTNNYLAAVLV-----EQGKV--GLAYADLST 177
Query: 420 LRVWVGTINDDASCAALGALLMQVSPKEVI 449
D + L A L ++ P EV+
Sbjct: 178 GEFAAAEFVDARALTQLQAELARLRPAEVL 207
Score = 47.4 bits (111), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLLR WI PL +E + R V L+ + + + + L +LPD+ER
Sbjct: 364 LDRTCTAMGARLLRRWIAQPLIVLEPLQVRQHAVARLVAETMTRLELREALAELPDMERA 423
Query: 624 LGRV 627
L R+
Sbjct: 424 LNRI 427
>gi|392595671|gb|EIW84994.1| DNA mismatch repair protein MSH3 [Coniophora puteana RWD-64-598 SS2]
Length = 1071
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 167/300 (55%), Gaps = 20/300 (6%)
Query: 728 SILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG 787
S L E+ + S ++ ++ ID L S+S A+ + P+ +D+
Sbjct: 774 SFLEEIIQDHYSILRHTVNTLATIDCL------VSLSHVALRDGYVRPE-----FSEDD- 821
Query: 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L+I HP VPND+ +G D+ R ++TGPNMGGKS+ +R L
Sbjct: 822 --TLEIVEGRHPMVEALRTDPFVPNDVYMGGDA----ARNKIITGPNMGGKSSSVRMVAL 875
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
I+AQ+G +VP + LS+ D I TR+GA+D + G STF+VE +ET +LQ AT SL
Sbjct: 876 IAIMAQIGSYVPAKSVKLSMLDGILTRMGASDELARGRSTFMVEMSETGEILQSATDKSL 935
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDELGRGTST DG +IA AV + LV+++ C+ LF THY + + ++++
Sbjct: 936 VILDELGRGTSTTDGMSIADAVLQHLVQKVRCKTLFITHYPMVAMDLERKFPAEIENLHM 995
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
+ +E+ G E+ FLYRLT G S+G++ A +AG+P+KV+E A + A + I
Sbjct: 996 GYM--AESRIDGRTEVTFLYRLTPGIATNSFGVECARLAGLPEKVLEVARQQSDACRDRI 1053
Score = 87.0 bits (214), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 170/405 (41%), Gaps = 76/405 (18%)
Query: 271 SASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISE 330
+ S+KQ + + D +L ++G + +E A++ H E+ + + + +G
Sbjct: 219 TPSEKQVLKLIKENPDTVLMIEIGYKFYFHENSAKLIHAEI------FSLHRFQSIG--- 269
Query: 331 SGIDDAVEKLVARGYKVGRIEQLETSEQAKARHT-NSVISRKLVNVVTPSTTVDGTIGPD 389
E L+++G+KVG +EQ+ET+ K T N + RKL ++ T +T VD D
Sbjct: 270 -------ETLLSQGHKVGIVEQVETAALKKVSDTRNELFDRKLTHLYTATTFVDELESVD 322
Query: 390 ------AVHLLAIKEGNCGP--DNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
A LL + E + P D+ + VW +D L L
Sbjct: 323 DASKHYAPSLLCLAEKSRQPGVDDTVTISLITICPSTGDVVW-DEFDDSLMRIELETRLT 381
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
P E+++ ++G+ K K L+ F+ E P F V++ +L Y N
Sbjct: 382 HTRPAELLFPDKGMSKPTGKLLKHFT------ETAP------FQQRVRVERFKELMSYTN 429
Query: 502 GSSSPWSKALENVMQHDIGFS-----------------ALGGLISHLSRLMLDD------ 538
+ E ++ + AL I HLS+ + D
Sbjct: 430 AFDLVTNFYSEETKRNSTDVNADELLAVIADFPPQVIIALAHAIKHLSKFSIADAFLGAK 489
Query: 539 -----------VLRNGDILPYKVYRDC--LRMDGQTL-YLDSCVTSSGKRLLRSWICHPL 584
+L + + ++YR+ L + G + LD T G RLL++W+ PL
Sbjct: 490 FFYKFTTRMHMLLNSNTLTNLEIYRNETDLSVKGSLMEILDRTNTKFGARLLKTWVGRPL 549
Query: 585 KDVEGINNRLDVVEYLMKN-SEVVMVVAQYLRKLPDLERLLGRVK 628
D + +R+D V+ ++K+ S+ ++ + Q LRK+PDL + L R++
Sbjct: 550 VDKIALRDRMDAVDEIVKSPSDKLVSIRQVLRKMPDLAKGLCRIQ 594
>gi|313896675|ref|ZP_07830223.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312974592|gb|EFR40059.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 869
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 164/281 (58%), Gaps = 26/281 (9%)
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKG 795
E+ V I+ +DVL+S A A+ S RP+I P S + +D P+++
Sbjct: 536 ERLVPIQNVARMIARVDVLQSMAEAAA--SYRYVRPVIRPASDGEIIIKDGRHPLVE--- 590
Query: 796 LWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
L E L VPND L + T+L+TGPNM GKST +R L ++AQ+G
Sbjct: 591 -----RLLERD-LFVPNDTHLSHGGTE----TMLITGPNMAGKSTYMRQVALLTLMAQVG 640
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP ++ D IFTR+GA+D +++G+STF+VE E A +L++AT+DSLVILDE+GR
Sbjct: 641 SFVPARSAEIAPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIGR 700
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTSTFDG +IA AV + RI+ + LFATHYH LT E A+ +++ A +
Sbjct: 701 GTSTFDGMSIARAVVEHIDTRIHAKTLFATHYHELT-EMANE---RIRNYCIAVREKGRG 756
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++FL R+ +GA +SYG+ VA +AG+P KV E A
Sbjct: 757 -------VMFLRRIVAGAADKSYGIHVARLAGLPPKVTERA 790
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 174/392 (44%), Gaps = 51/392 (13%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSG-VGKCRQ 325
+ ++ +QY + K + LLFF++G FYE++ DA+I KEL +T SG + K
Sbjct: 4 QNITPMMQQYLSAKKAHPGELLFFRLGDFYEMFFDDAKIAAKELGLTLTSRSGDLDKNPM 63
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ D + +LVA+G+KV EQ+ + + R++V VVTP T + G
Sbjct: 64 CGVPYHAADSYIARLVAKGFKVAIAEQIGDPK------AKGLTPREVVKVVTPGTALLGE 117
Query: 386 IGPDA--VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
DA V+++ I E G Y A D + + DA+ + L +
Sbjct: 118 ELKDAANVYIVLIHETAPG------CYALAGADISTGECFYAVYTGDAAVQQIQDELYRR 171
Query: 444 SPKEVIY-ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ E+++ E + + +R F A++ P A+T ++ + L + +F
Sbjct: 172 TAAELLFTEPLSVADD----VRTF-----AVQRLPHCAITVVAPDADDELLAR---HFPP 219
Query: 503 SSSPWSKALENVMQHDIGF--SALGGLISHLSRLMLDD----------VLRNGDILPYKV 550
P + + + + + +S ++RL D LRN +I
Sbjct: 220 EEIPADAGARTAIAALLRYLHATVMADLSQINRLSFLDAAAGMQLDTYTLRNLEIT---- 275
Query: 551 YRDCLRMDGQ--TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
LR G+ TL+ LD T G RLL+SW+ HPL I+ RLD V L+ S +
Sbjct: 276 --RSLRDGGKKHTLFDVLDFTRTPMGTRLLKSWLEHPLLAPHRIDARLDAVAELVSASSL 333
Query: 607 VMVVAQYLRKLPDLERLLGRVKARVQASSCIV 638
+ + LR + D ERLL R++ + + +V
Sbjct: 334 RAKLRELLRSIYDFERLLTRIETQAANARDLV 365
>gi|51244692|ref|YP_064576.1| DNA mismatch repair protein MutS [Desulfotalea psychrophila LSv54]
gi|81692923|sp|Q6AQ04.1|MUTS_DESPS RecName: Full=DNA mismatch repair protein MutS
gi|50875729|emb|CAG35569.1| probable DNA mismatch repair protein (MutS) [Desulfotalea
psychrophila LSv54]
Length = 879
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 167/282 (59%), Gaps = 30/282 (10%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
+S++ H ++ +D S A + + HRP I +D+G L+I+
Sbjct: 552 SSRFLATAHQLALLDFYASAAEVSQQYN--YHRPEI----------RDDGS--LEIREGR 597
Query: 798 HP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
HP G VPND+ L + ++ L ++TGPNM GKST+LR T L V++AQ+G
Sbjct: 598 HPVIERSLPAGKFVPNDVYLDQAENEIL----VITGPNMAGKSTVLRQTALIVLMAQMGY 653
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VP + + + D IFTR+GA D + G+STF+VE +ETA++L AT SLVILDE+GRG
Sbjct: 654 YVPADSARIGVVDRIFTRVGAMDDLRRGQSTFMVEMSETANILNNATPRSLVILDEIGRG 713
Query: 917 TSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSE 974
TST+DG +IA+AV LV++ I + +FATHYH LT + + +Q+ + A +
Sbjct: 714 TSTYDGLSIAWAVTEHLVQKDGIGVKTMFATHYHELTD--LARRYARIQNYSIAVR---- 767
Query: 975 NYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ + ++FL++L G SYG+QVA +AGVP +VVE A
Sbjct: 768 ---EWQKSVIFLHKLIKGGTSRSYGIQVAALAGVPAQVVERA 806
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 158/395 (40%), Gaps = 67/395 (16%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT----LSGVGKCR 324
K++ +QY+ +K Q+ +LF+++G FYE++ DA K L +T S +
Sbjct: 5 KITPMMQQYFKLKEQHPHTILFYRMGDFYEMFFEDAITASKILGITLTSRNKKSDSAQIP 64
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
GI + + K+V G +V EQ+E A+ ++ R++V +VTP D
Sbjct: 65 MCGIPYHALQGYLAKMVEAGKRVAICEQVEDPSTAQG-----IVKREVVQIVTPGVVTDN 119
Query: 385 TIGPDAVHLLAIKEGNC------GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
LL K N G +N YG +F+D V A +
Sbjct: 120 -------QLLDAKSNNFVTAISRGKNNR---YGLSFLDITTGEFIVADFAGSDGEADILD 169
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT-------DFLDASEVK 491
L +++P E++ L A+ A L P + +T DF D S K
Sbjct: 170 QLTRLTPTELLVSEEELEDFAETI-------DLATTLIPGLCITPRPHHLFDF-DQSHEK 221
Query: 492 KL-----VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISH---LSRLMLDDVLRNG 543
L + L+G+ G + + + D I H LSRL LD +L+
Sbjct: 222 LLEHFAVISLDGF--GCETLVEGQIAAAILLDYIEETQKSAIHHIEKLSRLELDAILQID 279
Query: 544 DILPYKVYRDCLRMDGQTLY-----------LDSCVTSSGKRLLRSWICHPLKDVEGINN 592
D R L + QT+ LD T G R L+ I PL+D I
Sbjct: 280 D-----SSRRNLELT-QTIVGGNRSGSLLSVLDLTTTPMGARFLKQAILFPLQDRARILR 333
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
RL+ V Y NSE + + L ++ D+ERL R+
Sbjct: 334 RLNAVGYFFNNSEARHQIRELLDQVYDIERLNSRI 368
>gi|430834798|ref|ZP_19452800.1| DNA mismatch repair protein mutS [Enterococcus faecium E0679]
gi|430484867|gb|ELA61814.1| DNA mismatch repair protein mutS [Enterococcus faecium E0679]
Length = 881
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDWIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTVLEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPSNLLERAA 785
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/466 (24%), Positives = 199/466 (42%), Gaps = 78/466 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YFN----GSSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYR 552
Y + S + KA+E H + I + S+ L L +R G
Sbjct: 231 YLSVTQKRSLAHIQKAVEYQPDHFLK-------IDYYSKFNLELSQSIRTG--------- 274
Query: 553 DCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 ---KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQ 331
Query: 612 QYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLL 668
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 332 SALTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLL 386
Query: 669 MLMHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 387 SEMQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDMYRSAM 432
>gi|427439507|ref|ZP_18924162.1| DNA mismatch repair protein MutS [Pediococcus lolii NGRI 0510Q]
gi|425788343|dbj|GAC44950.1| DNA mismatch repair protein MutS [Pediococcus lolii NGRI 0510Q]
Length = 894
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 29/299 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TDL+ E + E E+ + + ++ +DVL+SFAV + Q
Sbjct: 515 TDLEYELFKKIRETIKEQIERLQNLAKQVAELDVLQSFAVVSEEY-----------QFVK 563
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P + + + ++IK HP G VPNDIL+ +D++ LL+TGPNM GK
Sbjct: 564 PTMTESHE---IEIKAGRHPVVEKVMGHQSYVPNDILMNQDTE-----ILLITGPNMSGK 615
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L VI+AQ+GCFVP E L + D IFTR+GA D +++G+STF+VE E
Sbjct: 616 STYMRQLALTVIMAQMGCFVPAEEATLPIFDQIFTRIGAADDLISGQSTFMVEMQEANRA 675
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ T +SL++ DE+GRGT+T+DG A+A ++ + + ++ + LF+THYH LT
Sbjct: 676 LKDGTANSLILFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTHYHELT------- 728
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L K+ + D LVFL+++ G +SYG+ VA +AG+P ++ AS
Sbjct: 729 --ALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIHVAKLAGMPDSLLARAS 785
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 196/459 (42%), Gaps = 82/459 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+QY D LF+++G FYEL+ DA G + L+ +T + G+
Sbjct: 12 RQYMEIKNQYPDAFLFYRIGDFYELFYDDAIKGSQLLELTLTARSKNADDPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT D DA
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPKAAKG-----MVKREVIQLVTPGTTTDQK-AEDA- 124
Query: 392 HLLAIKEGN----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA--ALGALLMQVSP 445
KE N D + YGFA+ D + + V ++D S A+G ++
Sbjct: 125 -----KENNYLTAVSFDAATKKYGFAYTDLSTGELKVAILDDIESVVNEAVGLRTREIVA 179
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA--VTDFLDASEVKKLVQLNGYFNGS 503
+ E+ G E K L + +E++ ++ + D V+ + QL Y +
Sbjct: 180 DQYFVEHFG---ERFKELNILVSQQNDVEISAELSYLIQDLTSPIAVQVVKQLLMYVQVT 236
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQT 561
++ + ++ F + H S+ L L ++R G + G
Sbjct: 237 QKRNLAHMQKAIAYEPSFYLR---MDHASKYNLELTRLIRTG------------KKQGTL 281
Query: 562 LYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
L+L D T+ G RLL+ W+ PL + IN R V+ L+++ + + L K+ DL
Sbjct: 282 LWLLDETKTAMGGRLLKQWLDRPLIRKDAINARQSRVQVLLEHFFERSNLQEELTKVYDL 341
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG---LRIAMDLLMLMHKEGHI 677
ERL GRV FG+ V G +++ LL + K H+
Sbjct: 342 ERLAGRV-------------------------AFGN-VNGRDLIQLKTSLLQI-PKIRHV 374
Query: 678 IPSLSRIFKPPIFDGS----DGLDKFLTQFEAAIDSDFP 712
+ L P+FD + D + + EAAID D P
Sbjct: 375 LAELD----DPVFDEALTRLDPVSEIADLIEAAIDEDAP 409
>gi|297569846|ref|YP_003691190.1| DNA mismatch repair protein MutS [Desulfurivibrio alkaliphilus AHT2]
gi|296925761|gb|ADH86571.1| DNA mismatch repair protein MutS [Desulfurivibrio alkaliphilus AHT2]
Length = 884
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 144/237 (60%), Gaps = 22/237 (9%)
Query: 786 NGGPVLKIKGLWHPFALGENGGLP----VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
N G ++I HP LP VPND+ L +DS + + ++TGPNM GKST+
Sbjct: 588 NAGEEIRIVEGRHPVI---ERNLPPGRFVPNDVHLDQDSKEVM----IITGPNMAGKSTV 640
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
LR T L V++AQ+G FVP + + D IFTR+GA D + G+STF+VE ETA++L
Sbjct: 641 LRQTALIVLMAQMGGFVPAAEAGIGVVDRIFTRVGAMDDLRRGQSTFMVEMNETANILNN 700
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPH 959
AT SLVILDE+GRGTSTFDG AIA+AV LV++ + +FATHYH LT+ A+ P
Sbjct: 701 ATPQSLVILDEIGRGTSTFDGLAIAWAVAEALVQKGGKGVKTMFATHYHELTELAATEPR 760
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ H+A + + +VFL++L G SYG+QVA +AGVP VV A
Sbjct: 761 IHNFHIAV---------REWNDTIVFLHKLLPGGVSRSYGIQVAALAGVPATVVARA 808
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 556 RMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
R DG L LD T G R L+ + PLKDVE IN RLD VE L+ E+ + + L
Sbjct: 299 RRDGSLLAALDLTRTPMGARQLKKSLLSPLKDVEAINRRLDAVEQLLTEQELGRQLDEAL 358
Query: 615 RKLPDLERL-----LGRVKAR---VQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMD 666
+ DLERL LGR AR S LPLI +++L Q + G L + + D
Sbjct: 359 AAIYDLERLNSRAVLGRANARDLSALGVSLGRLPLI-RQLLASQPGLLGQLGQQIDELAD 417
Query: 667 LLMLM 671
L L+
Sbjct: 418 LHQLL 422
Score = 46.2 bits (108), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG------K 322
K++ +QY +K+Q+ + +LF+++G FYE++ DA + L ITL+ G K
Sbjct: 2 KITPMLQQYLEIKNQHSEAILFYRMGDFYEMFFDDAVEAARILG--ITLTARGNKGDEEK 59
Query: 323 CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA 361
G+ + +L+ G +V EQ+E QAK
Sbjct: 60 IPMCGVPYHSASSYLARLIKAGKRVAICEQMEDPAQAKG 98
>gi|384914572|ref|ZP_10015356.1| DNA mismatch repair protein mutS [Methylacidiphilum fumariolicum
SolV]
gi|384527457|emb|CCG91224.1| DNA mismatch repair protein mutS [Methylacidiphilum fumariolicum
SolV]
Length = 837
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 154/270 (57%), Gaps = 29/270 (10%)
Query: 751 IDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP- 809
+DV+ V +S++S A + P + P+++I+ HP LP
Sbjct: 555 VDVINKLDVFSSLASLAQEKRYCRPSMVDE--------PIIEIEEGRHPIV---EQCLPS 603
Query: 810 ---VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPN LG DS R L+LTGPNM GKST +R L +LA G FVP + +
Sbjct: 604 EDFVPNSTFLGPDS-----RILILTGPNMAGKSTYIRQVALICLLAHTGSFVPAKRAKIG 658
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
L D IFTR+G++D + G+STFLVE ETA++L AT+ SLVILDE+GRGTSTFDG ++A
Sbjct: 659 LLDRIFTRIGSSDDLSMGQSTFLVEMNETANILHNATERSLVILDEVGRGTSTFDGLSLA 718
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ L + LFATHYH L K +P + MA +EN +VFL
Sbjct: 719 WAIVEDLYKTNKSLTLFATHYHELAKLADFYPEIKNYSMAVV--ETTEN-------VVFL 769
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ G+ +SYG+QVA +AG+P++V+E A
Sbjct: 770 RKVVQGSMNKSYGIQVAKLAGIPERVIEKA 799
Score = 72.8 bits (177), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 164/387 (42%), Gaps = 61/387 (15%)
Query: 270 MSASQKQYWNVKSQYM-DVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQVG 327
++ +QYW +K + DVLL F++G F+EL+ DA+ G + L+ +T GV C G
Sbjct: 10 LTPMMRQYWEIKQKLPPDVLLLFRLGDFFELFLDDAKEGARILNLVLTQRQGVPMC---G 66
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTP-----STTV 382
+ I+ V KLV G +V +Q+E + + ++ R++V +++P S+ +
Sbjct: 67 VPVENIEGYVSKLVKAGKRVALCDQMEQPKPGQ------LVKREIVRILSPGSNGYSSNL 120
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D + L K+ +G A +D G + ++ + L+ +
Sbjct: 121 DPKEHQFCMSLYRWKKK----------FGIALMDITTGLFLSGQLENEKE---IMELVNR 167
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALE-LTPAMAVTDF----LDASEVKKLVQLN 497
P EVI C +R+ G +E ++ V + D E K L
Sbjct: 168 YGPVEVILAEGAEC----SFIRQNEHGKELIEGISQECYVHRYFPWAFDLEEAKNF--LM 221
Query: 498 GYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV--------LRNGDILPY- 548
+F SS + + D A G L+ + S ++ + L N ++L
Sbjct: 222 AHFKVSSLDGY----GLREMDAAICAAGALLRYFSEVLHQSISHIVTILQLSNSEVLWLD 277
Query: 549 KVYRDCLRM------DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ + L + G++L+ +D +T G RLLR W+ P + + I R +
Sbjct: 278 SIAQKTLEVIQANSKSGKSLFHAIDKTLTPGGGRLLRRWLSEPSRCLPVIQERQQAIALW 337
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + + L+K+ DLERLL +V
Sbjct: 338 INQQQKREQLREILKKIGDLERLLSKV 364
>gi|85712118|ref|ZP_01043171.1| DNA mismatch repair protein [Idiomarina baltica OS145]
gi|85694108|gb|EAQ32053.1| DNA mismatch repair protein [Idiomarina baltica OS145]
Length = 853
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 158/275 (57%), Gaps = 37/275 (13%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+ +D L +FA A + RP ++ QS +LK+ HP +
Sbjct: 550 AIAELDTLCAFATLAVEQNYC--RPALVEQSG-----------LLKLSQARHPVIERLSD 596
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+PND+ + + R L++TGPNMGGKST +R L VILA +GCFVP +
Sbjct: 597 EPFIPNDLAMTDKR-----RLLMITGPNMGGKSTYMRQAALIVILAHMGCFVPAREAEIG 651
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IFTR+GA+D I +G STF+VE TETA++L AT +SLV++DE+GRGTST+DG ++A
Sbjct: 652 FVDRIFTRIGASDDIASGRSTFMVEMTETANILHNATSESLVLMDEIGRGTSTYDGLSLA 711
Query: 927 YAVFRQLVERINCRLLFATHYHPLTK-----EFASHPHVTLQHMACAFKSNSENYSKGDQ 981
++V QL +++C LFATHY LT+ E + + HV Q + +
Sbjct: 712 WSVAEQLASKLDCLTLFATHYFELTELAERLENSCNVHVEAQ--------------EHND 757
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+VFL+ + G+ S+GLQVA +AGVP V+E A
Sbjct: 758 HIVFLHTVAEGSANRSFGLQVAKLAGVPNNVIERA 792
Score = 99.8 bits (247), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 175/387 (45%), Gaps = 53/387 (13%)
Query: 265 EALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR 324
++++ + +QY +K+++ D+LLF+++G FYEL+ DA+ + LD +T G
Sbjct: 9 QSIQAHTPMMQQYLRIKAEHPDMLLFYRMGDFYELFYDDAKRAAQLLDISLTKRGASNGE 68
Query: 325 QV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
+ G+ +++ + +LV RG V EQ+ +K + RK+V ++TP T
Sbjct: 69 PIPMAGVPYHAVENYLARLVTRGESVAICEQVGDPATSKG-----PVERKVVRILTPGTI 123
Query: 382 VDGTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
D ++ D L AI E + A ++ ++ R W +++ S L A
Sbjct: 124 TDESLLNDKQQNLLSAICELKSS-------FSLATLELSSGRFW---LSEPQSREQLAAE 173
Query: 440 LMQVSPKEVIY-ENRGL-------CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVK 491
L ++ P E++Y E L C+ +++ +F A +A LT A
Sbjct: 174 LQRLQPAELLYPEGMSLAQLPLAHCRCRKRSPWEFDADTAFKLLTQQFATR--------- 224
Query: 492 KLVQLNGYFNGSSSPWSKALENVMQH--DIGFSALGGLISHLSR------LMLDDVLRNG 543
L G+ P + VM + D +AL + S ++R ++LD R
Sbjct: 225 ---HLAGFGFNQQEPILGSAGAVMHYVQDTQRAALPHIRS-ITREPTDDAVILDAATRRN 280
Query: 544 DILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
L + + + T LD V + G R + W+ PL+D E +N R D VE LM +
Sbjct: 281 LELNQSAHGESTHL---TAVLDETVCAMGSRNFQRWLQRPLRDHEILNQRYDAVEALMTD 337
Query: 604 SEVVMVVAQYLRKLPDLERLLGRVKAR 630
+ + ++L+ + D+ER++ R+ R
Sbjct: 338 DR-YLELREHLKAITDIERIVARIGLR 363
>gi|304316821|ref|YP_003851966.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778323|gb|ADL68882.1| DNA mismatch repair protein MutS [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 857
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 162/282 (57%), Gaps = 28/282 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ +DVL S A+ A S +P++ N G + IK HP
Sbjct: 551 IAVLDVLTSLAMVAE--SNNYVKPIV------------NDGDRILIKDGRHPVIETIVDD 596
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ NDI + D+ P +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 597 SFISNDI----EIDEKKP-IMIITGPNMAGKSTYMRQVALIVLMAQVGSFVPASYAEIGI 651
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D + +G+STF+VE E + +L ATQ SL+ILDE+GRGTST+DG +IA
Sbjct: 652 VDRIFTRVGASDDLFSGQSTFMVEMNEVSVILNSATQKSLIILDEVGRGTSTYDGMSIAC 711
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ + ++I + +FATHYH LTK L++ K+ + + + + E++FL
Sbjct: 712 AILEYIHDKIKAKTMFATHYHELTK---------LENQLNGIKNYNISVDETNDEIIFLR 762
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
++ G+ +SYG+QVA +AG+P V++ A +++ S GE
Sbjct: 763 KIIPGSADKSYGIQVAKLAGLPNDVIDNAKKILNSLENSNGE 804
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 172/372 (46%), Gaps = 49/372 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY+ +K +Y D +LFF++G FYE++ DA I KEL+ +T G + G+
Sbjct: 8 EQYFKIKEKYKDSILFFRIGDFYEMFFDDAIIAAKELEIVLTGKDCGQDERAPMAGVPFH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KLV +GYKV EQLE AK ++ R ++ V TP T ++ +
Sbjct: 68 AADFYIDKLVKKGYKVAICEQLEDPASAKG-----LVDRDVIRVFTPGTVINTNSIEEKS 122
Query: 392 --HLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+LL+I K+ N YG +FVD ++V I + +M+ +P E+
Sbjct: 123 NNYLLSIFKDENN--------YGLSFVDVMTGDLFVTQIIKCDDIRKIYDEIMRYNPSEI 174
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
I N +K +R ++ + ++ D + ++ FN S +
Sbjct: 175 IANNDFFS--LKKLVRVINSSKIYINKYE----NNYQDFESI-----ISNQFNKSLNELG 223
Query: 509 --------KALENVMQH-----DIGFSALGGLISHL--SRLMLD-DVLRNGDILPYKVYR 552
K+L V+ + + S L L + S ++LD + ++N +I+ R
Sbjct: 224 LEGKNYAIKSLTTVLIYLKELQKVQLSQLNNLTYYEDNSFMLLDNNTIKNLEIVQ-SPNR 282
Query: 553 DCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ R DG L LD VT G RLL+ WI PL D+E IN RLD V+ L + + +
Sbjct: 283 NNSR-DGTLLSVLDQTVTPMGGRLLKRWIEEPLIDIEKINLRLDSVDELFNDFKGRSDLR 341
Query: 612 QYLRKLPDLERL 623
L+ + DLERL
Sbjct: 342 NALKGIYDLERL 353
>gi|402312017|ref|ZP_10830947.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium ICM7]
gi|400370678|gb|EJP23660.1| DNA mismatch repair protein MutS [Lachnospiraceae bacterium ICM7]
Length = 882
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 206/379 (54%), Gaps = 50/379 (13%)
Query: 728 SILIELFIEKASQWSEVIHAI-SCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDN 786
S+ E+F+E + ++ ++ I S + S+++ A + + P+ N
Sbjct: 525 SLEYEVFVEIRDEIAKNVNRIQSSAKAVAYIDAICSLATVAYNNNYVKPEI--------N 576
Query: 787 GGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
++ IK HP N + ND L ++ R ++TGPNM GKST +R T
Sbjct: 577 TTGIIDIKDGRHPVVETMLNDDSFIANDTYLDQNK----KRMSIITGPNMAGKSTYMRQT 632
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
L ++AQ+G FVP + L + D IFTR+GA+D + +G+STF+VE TE A++L+ AT++
Sbjct: 633 ALICMMAQIGSFVPAKQANLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRN 692
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQ 963
SLVILDE+GRGTSTFDG AIA+AV + ++ I + LFATHYH L++ + P V
Sbjct: 693 SLVILDEIGRGTSTFDGLAIAWAVVEHISNIKLIGAKTLFATHYHELSELEGTLPGV--N 750
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV-------VEAA 1016
+ + K N +N +VFL ++ +G +SYG+QVA +AGVP V +E
Sbjct: 751 NYCISVKENGDN-------IVFLRKIITGGADKSYGIQVAKLAGVPDSVTNRAKELIEEL 803
Query: 1017 SHAALAMK-KSIGESF----------KSSE----QRSEFSSLHEEWLKTIVNVSRVDCNS 1061
S A +A + + I E+ K SE Q S F +++ + + I +S +D S
Sbjct: 804 SSADIATRAREIAEATPAVSKRKPVKKMSEVEAGQLSLFDAINNDTI--IKEISEIDITS 861
Query: 1062 -DDDDAYDTLFCLWHELKN 1079
DA +TL+ L +++KN
Sbjct: 862 MTPMDALNTLYALQNKIKN 880
Score = 76.3 bits (186), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 99/420 (23%), Positives = 173/420 (41%), Gaps = 77/420 (18%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
+S +Y K +Y D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 3 LSPMMSKYLETKKEYPDCILFYRLGDFYEMFFEDATEVARELELTLTGKDCGLEERAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGT 385
G+ + + +LV G+KV EQ+E + AK ++ R++V +VTP T T G
Sbjct: 63 GVPYHAAETYINRLVQNGHKVAIAEQMEDPKLAKG-----LVKREVVRIVTPGTITSTGV 117
Query: 386 IGPDA----VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ D + + I E +G A D + +V + S L +
Sbjct: 118 LADDKNNYIISIFYIDER----------FGLAICDISTGDFFVTEL---VSIRELFDEIQ 164
Query: 442 QVSPKEVI----YENRGLCKEAQKALRKFSAGSAALELT--------------------P 477
+ P E+I +E G+ E K +K++ +L+ T
Sbjct: 165 KYQPTEIICNHAFEISGISLEELK--KKYNITITSLDNTYFSEKNSIDILKRHFAVSSIE 222
Query: 478 AMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD 537
A+ +++FLDA+ + L + S ++ +G SA M+
Sbjct: 223 ALGLSEFLDAT-ISSGAMLRYLYEMQKSSCAQI--------VGISAYKN-----GDYMIV 268
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
D ++ + R+ + LD T+ G R+LR ++ PL + E I NR + V
Sbjct: 269 DTSSRRNLELVETMREKKKNGSLLGVLDKTNTAMGARMLRGFLEQPLVNKERIINRQEAV 328
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR---------VQASSCIVLPLIGKKVLK 648
L + +YL + DLERL+ RV + + AS ++ P+ K+VLK
Sbjct: 329 AELFDRYIDREELREYLNPIYDLERLMSRVVTKNANTRDLLSLSASMKMISPI--KEVLK 386
>gi|331006215|ref|ZP_08329537.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC1989]
gi|330419972|gb|EGG94316.1| DNA mismatch repair protein MutS [gamma proteobacterium IMCC1989]
Length = 901
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 158/283 (55%), Gaps = 42/283 (14%)
Query: 747 AISCIDVLRSFAVTAS-----------MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKG 795
A++ +DVL + A A ++ A + + Q ++P V + G
Sbjct: 570 AVAELDVLTTLAERADRLQFCCPTLTVTTAAAETNSITIEQGRHPVVEEVLAGTA----- 624
Query: 796 LWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
PF VPNDI L D R L++TGPNMGGKST +R T L +LA +G
Sbjct: 625 ---PF---------VPNDISLNHDR-----RMLIITGPNMGGKSTYMRQTALITLLAHIG 667
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
+VP + +S+ D IFTR+G++D + G STF+VE TETA++LQ AT++SLV++DE+GR
Sbjct: 668 SYVPAKSATISIVDRIFTRIGSSDDLAGGRSTFMVEMTETANILQNATKNSLVLMDEIGR 727
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTSTFDG ++A+A L + I LFATHY +T S V H++
Sbjct: 728 GTSTFDGLSLAWACAHHLADNIQALCLFATHYFEITSLPESVTGVANVHLSA-------- 779
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
++ + +VFL+R+ GA +SYGLQVA +AG+PQ VV A
Sbjct: 780 -TEHNDNIVFLHRIEEGAASQSYGLQVAKLAGIPQSVVNEAQQ 821
Score = 76.6 bits (187), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 169/393 (43%), Gaps = 66/393 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI- 333
+QY +K+++ ++F+++G FYEL+ DA+ + LD ITL+ GK I +GI
Sbjct: 13 QQYLGIKAEHPHEVVFYRMGDFYELFFDDAKRVSQILD--ITLTARGKSGGEPIPMAGIP 70
Query: 334 ----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD 389
D + KLV G V EQ+ +K + RK++ +VTP T D + +
Sbjct: 71 YHSADGYLAKLVQAGESVAICEQVGDPATSKGP-----VERKVMRIVTPGTVTDEAL-LN 124
Query: 390 AVH---LLAIKEGNCGPDNGSV-----------VYGFAFVDCAALRVWVGTINDDASCAA 435
A H L+A+ G + +V YG A +D + R +V ++ + A
Sbjct: 125 AKHDNLLVAVNVGASTVNKSTVNKSTENKNSENTYGIATLDVGSGRFYVLEVDSE---EA 181
Query: 436 LGALLMQVSPKEVI----YENRGLCKEAQKALR-----KFSAGSAALELTPAMAVTDFLD 486
L A L +++P E++ EN + E +K LR +F +A L D +
Sbjct: 182 LAAELQRLNPAELLLNQHLENTTI-GETRKGLRYRAPWEFDLDTAQRLLCEQFGTRDLI- 239
Query: 487 ASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDIL 546
A ++L G G + + + + H+ RL ++ R +L
Sbjct: 240 AFGCEELTVAKGA-AGCVMAYVQETQRTA------------LPHICRLQQEN--RQDSVL 284
Query: 547 PYKVYRD----CLRMDG---QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
R C + G TL+ L++C T+ G R L WI PL + + R + +
Sbjct: 285 MDASTRRNLELCTNLSGGEDNTLFSILNTCATTMGSRQLARWINRPLTQQDILVQRQEAI 344
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
L+ N + L+ + DLER+L RV R
Sbjct: 345 GTLLGNYR-FEPMHDTLKAIGDLERILARVALR 376
>gi|304385250|ref|ZP_07367595.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM 20284]
gi|304328457|gb|EFL95678.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM 20284]
Length = 894
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 29/299 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TDL+ E + E E+ + + ++ +DVL+SFAV + Q
Sbjct: 515 TDLEYELFKKIRETIKEQIERLQNLAKQVAELDVLQSFAVVSEEY-----------QFVK 563
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P + + + ++IK HP G VPNDIL+ +D++ LL+TGPNM GK
Sbjct: 564 PTMTESHE---IEIKAGRHPVVEKVMGHQSYVPNDILMNQDTE-----ILLITGPNMSGK 615
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L VI+AQ+GCFVP E L + D IFTR+GA D +++G+STF+VE E
Sbjct: 616 STYMRQLALTVIMAQMGCFVPAEEATLPIFDQIFTRIGAADDLISGQSTFMVEMQEANRA 675
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ T +SL++ DE+GRGT+T+DG A+A ++ + + ++ + LF+THYH LT
Sbjct: 676 LKDGTANSLILFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTHYHELT------- 728
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L K+ + D LVFL+++ G +SYG+ VA +AG+P ++ AS
Sbjct: 729 --ALDQTLTRLKNVHVGAVEQDGNLVFLHKMEDGPADKSYGIHVAKLAGMPDSLLARAS 785
Score = 100 bits (249), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 117/459 (25%), Positives = 195/459 (42%), Gaps = 82/459 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K QY D LF+++G FYEL+ DA G + L+ +T + G+
Sbjct: 12 RQYMEIKKQYPDAFLFYRIGDFYELFYDDAIKGSQLLELTLTARSKNADDPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT D DA
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPKAAKG-----MVKREVIQLVTPGTTTDQK-AEDA- 124
Query: 392 HLLAIKEGN----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA--ALGALLMQVSP 445
KE N D + YGFA+ D + + V ++D S A+G ++
Sbjct: 125 -----KENNYLTAVSFDAATKKYGFAYTDLSTGELKVAILDDIESVVNEAVGLRTREIVA 179
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA--VTDFLDASEVKKLVQLNGYFNGS 503
+ E+ G E K L + +E++ ++ + + V+ + QL Y +
Sbjct: 180 DQYFVEHFG---ERFKELNILVSQQNDVEISAELSYLIQNLTSPIAVQVVKQLLMYVQVT 236
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQT 561
++ + ++ F + H S+ L L ++R G + G
Sbjct: 237 QKRNLAHMQKAIAYEPSFYLR---MDHASKYNLELTRLIRTG------------KKQGTL 281
Query: 562 LYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
L+L D T+ G RLL+ W+ PL + IN R V+ L+++ + + L K+ DL
Sbjct: 282 LWLLDETKTAMGGRLLKQWLDRPLIRKDAINARQSRVQVLLEHFFERSNLQEELTKVYDL 341
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG---LRIAMDLLMLMHKEGHI 677
ERL GRV FG+ V G +++ LL + K H+
Sbjct: 342 ERLAGRV-------------------------AFGN-VNGRDLIQLKTSLLQI-PKIRHV 374
Query: 678 IPSLSRIFKPPIFDGS----DGLDKFLTQFEAAIDSDFP 712
+ L P+FD + D + + EAAID D P
Sbjct: 375 LAELD----DPVFDEALTRLDPVSEIADLIEAAIDEDAP 409
>gi|87122440|ref|ZP_01078320.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121]
gi|86162233|gb|EAQ63518.1| DNA mismatch repair protein MutS [Marinomonas sp. MED121]
Length = 868
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 157/272 (57%), Gaps = 30/272 (11%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-GPVLKIKGLWHPFALGE 804
+A+S +DVL +FA A RP+I P + G PV++ + PF
Sbjct: 552 NALSELDVLANFAERAERHRYV--RPVI---EDKPGIEILEGRHPVVE-SVITEPF---- 601
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
+PND+++ + L++TGPNMGGKST +R L +LA GCFVP E
Sbjct: 602 -----IPNDLIMSPERS-----LLMITGPNMGGKSTYMRQIALITLLAHTGCFVPAEAAN 651
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
LSL D IFTR+G++D + G STF+VE TETA++L AT SLV++DE+GRGTSTFDG +
Sbjct: 652 LSLVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNATPKSLVLMDEVGRGTSTFDGLS 711
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+A++ L ++ C +LFATHY LT + H+ +S +V
Sbjct: 712 LAWSAVDHLANQVKCNVLFATHYFELTLLADELKNAANVHLTATEYEDS---------IV 762
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
FL+++ GA +SYGLQVA +AGVP+ V++AA
Sbjct: 763 FLHKVHDGAASQSYGLQVAQLAGVPRDVIQAA 794
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 52/376 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY+ +KSQ+ + LLF+++G FYE++ DA+ LD ITL+ G I +GI
Sbjct: 14 RQYFGLKSQHPNELLFYRMGDFYEIFYDDAKKAAHLLD--ITLTSRGHSGGQPIPMAGIP 71
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAVH 392
A E +AR ++G E + EQ T+ + R++ +VTP T D +
Sbjct: 72 YHAAENYIARLVRMG--ESVVVCEQVGDPATSKGPVERQVARIVTPGTLSDEAFLEERKE 129
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI--- 449
L + + +YGF+++D A+ R V + A + L +++P E++
Sbjct: 130 NLLVSIAHLSRKQED-IYGFSYLDMASGRFSVFEVE---GVDAFDSELQRLAPTEILVSE 185
Query: 450 -YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ------LNGYFNG 502
+ +R L +K +R EL P F S ++L+Q L G+
Sbjct: 186 DFPSRNLIT-LEKGVR---------ELGP----WHFDYESCYRQLIQQFDTKDLTGFGCE 231
Query: 503 SSSPWSKALENVMQH--DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ 560
S A ++Q+ D SAL H+ + L+ ++ + R L +D
Sbjct: 232 ELSAAIAAAGALLQYAKDTQRSAL----PHIQAITLEH--KDESVQIDGATRRNLEIDLN 285
Query: 561 ---------TLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
T LD C + G RLL+ W+ P +++ IN R D V+ L+ N+ + ++
Sbjct: 286 LSGSTSNTLTSVLDRCSSPMGSRLLKRWLHQPSRNLSIINARQDAVQNLI-NNYLYDLIK 344
Query: 612 QYLRKLPDLERLLGRV 627
L+++ D+ER+L RV
Sbjct: 345 PELKEVGDIERILARV 360
>gi|431763134|ref|ZP_19551687.1| DNA mismatch repair protein mutS [Enterococcus faecium E3548]
gi|430622828|gb|ELB59538.1| DNA mismatch repair protein mutS [Enterococcus faecium E3548]
Length = 881
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS +DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAVDVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKQAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT L+ K+ + D E+VFL+++ G SYG+ V
Sbjct: 720 FSTHYHELT---------VLEKELLQLKNVHVGAVEKDGEVVFLHKMMDGPADRSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDTLIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y S + KA+E H + L L +R G
Sbjct: 231 YLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|326914909|ref|XP_003203765.1| PREDICTED: DNA mismatch repair protein Msh2-like [Meleagris
gallopavo]
Length = 873
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 199/381 (52%), Gaps = 43/381 (11%)
Query: 698 KFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIH----AISCIDV 753
KF +AI+ D+ +N + + E +++ I AS ++E I I+ +D
Sbjct: 490 KFTNSKLSAINEDY--IKNREEYE---EAQDAIVKEIINIASGYAEPIQTMNDVIAQLDA 544
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPND 813
+ SFA ++ + RP++L + + V +KG HP ++ +PND
Sbjct: 545 IVSFAHVSNGAPVPYVRPVVLEKGQGRIV----------LKGARHPCIEVQDEVAFIPND 594
Query: 814 ILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFT 873
+ + ++TGPNMGGKST +R T + V++AQ+GCFVPC+ +++ D I
Sbjct: 595 VTFEKGKQ----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILA 650
Query: 874 RLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL 933
R+GA D + G STF+ E ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A+A+ +
Sbjct: 651 RVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYI 710
Query: 934 VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGA 993
+I +FATH+H LT P V H+ D L LYR+ +G
Sbjct: 711 ASKICAFCMFATHFHELTALADQVPTVNNLHVTAL---------TSDDTLTMLYRVKAGV 761
Query: 994 CPESYGLQVAVMAGVPQKVVEAASHAALAM---------KKSIGE--SFKSSEQRSEFSS 1042
C +S+G+ VA +A P+ V+E A AL + K+S GE + K +R E
Sbjct: 762 CDQSFGIHVAELAAFPKHVIENAREKALELEEFQDLGRPKESEGEPAAKKCYREREEGEK 821
Query: 1043 LHEEWLKTIVNVSRVDCNSDD 1063
+ +++L + + D + +D
Sbjct: 822 IIQDFLCQVKALPLTDMSEED 842
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 135/336 (40%), Gaps = 46/336 (13%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G V G +VD ++ V D+ + L ALL+Q+ PKE + E K +
Sbjct: 96 DGQRVIGVGYVDTTLRKLSVCEFPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQ 155
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
G L DF V+ L +L G + E M+ + S+L
Sbjct: 156 VIQRGGI---LITDRKKADFTTKDIVQDLNRLLKSRKGEQMNSAALPE--MEKQVAVSSL 210
Query: 525 GGLISHLSRLMLDD-----------------VLRNGDILPYKVYRDCLRMDGQTL----Y 563
+I L L+ DD VL N + +++ + T
Sbjct: 211 SAVIKFLE-LLSDDSNFGQFELTTFDLSQYMVLDNAAVQALNLFQSSVENANNTQSLAGL 269
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G+RL+ WI PL D I RL++VE ++++E+ + + LR+ PDL R
Sbjct: 270 LNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDTELRQGLQEDLLRRFPDLNR 329
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLS 682
L R + QA++ L + Q + ++V+ L H+ H + L+
Sbjct: 330 LAKRFQR--QAAT-----LQDCYRMYQAINQLPNVVQALE--------KHEGAHQMLLLA 374
Query: 683 RIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+F P+ D KFL E +D D +NH+
Sbjct: 375 -VFITPLNDIHSDFSKFLEMIETTLDMD--KVENHE 407
>gi|326484465|gb|EGE08475.1| DNA mismatch repair protein Msh3 [Trichophyton equinum CBS 127.97]
Length = 1148
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/356 (34%), Positives = 181/356 (50%), Gaps = 37/356 (10%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
DA L +L ++ K + + I A++ ID L S +V A+ P P
Sbjct: 828 DAAFLKLLSDIST-KYQLFRDCIQALATIDALHSLSVIAAQ-----------PGYVKPKY 875
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
D V+ I HP VPND L D R LL+TGPNMGGKS+ +
Sbjct: 876 TDDT---VINISQGRHPMVEKVLIDSYVPNDTQLSTDET----RALLVTGPNMGGKSSYV 928
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L I+ Q+G +VP E L + D ++TR+GA D ++ GESTF+VE +ETA +L++A
Sbjct: 929 RQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADILKQA 988
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLVILDELGRGTST DG AIA AV +V + LF THY L++ ++ P L
Sbjct: 989 TPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSRLASAFPGGEL 1048
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
+++ F +E +G Q++ FLY + G SYGL VA +A +P +++ A +
Sbjct: 1049 RNVHMKF---TETGDQG-QDITFLYEIGEGVAHRSYGLNVAKLANIPAGILDVAQVKSQE 1104
Query: 1023 MKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELK 1078
++ IG R F +L +E S D A + + CL ++++
Sbjct: 1105 LEAKIGRKKMGGVLRGIFQTLSDE--------------STSDSAGEQVECLLNDIE 1146
Score = 66.6 bits (161), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 92/424 (21%), Positives = 169/424 (39%), Gaps = 76/424 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ ++Q +K++++D +L +VG Y+ Y DA K L D +
Sbjct: 238 KLTPMERQIMEIKNKHLDAVLLIQVGYKYQFYGEDARTAAKVLSIVCIPGKLRFDDHPSE 297
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + + + V++LVA GYKVG ++QLET+ +A + N+ RKL N+
Sbjct: 298 AHLTRFASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMY 357
Query: 377 TPSTTVD--------GTIGPDAVHLLAIKE-GNCGPDNGS-VVYGFAFVDCAALRVWVGT 426
T +T ++ G + +LL + E G G +G V G V A V +
Sbjct: 358 TKATYIEDDAELELSGALEASTGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIHDS 417
Query: 427 INDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD 486
D + + L+ +SP E++ L K ++ S G +T F D
Sbjct: 418 FEDGFMRSEIETRLLHISPCELLLVG-DLSAATNKLVQHLSKGR----------MTTFGD 466
Query: 487 ASEVKKLVQ-----------LNGYFNG----SSSPWSKALENVMQHDIGFS-----ALGG 526
+++ + ++ ++ G + SP N++ + L
Sbjct: 467 NVRIERKEKSKTAAAEAHSHISSFYAGKLAATGSPEDAKASNLLDQVLKLPDDVTVCLSA 526
Query: 527 LISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY--------------------LDS 566
+I HL+ L+ V R + ++G TL ++
Sbjct: 527 MIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKGSLFWSMNR 586
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLERL 623
T G+RLLR W+ PL + + R + V L+ + + + + L ++ DLE+
Sbjct: 587 TRTKFGQRLLRRWVGRPLLEKAKLEERTEAVTELLDSDKSTLTYNLGSTLSQVRVDLEKA 646
Query: 624 LGRV 627
L RV
Sbjct: 647 LIRV 650
>gi|426230068|ref|XP_004009104.1| PREDICTED: DNA mismatch repair protein Msh3 [Ovis aries]
Length = 1119
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 166/305 (54%), Gaps = 23/305 (7%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L+ L E F E + +H ++ ID + S A A G RP + Q +
Sbjct: 787 VLDCSAEWLAFL-ENFSEHYHTLCKAVHHLATIDCIFSLAKVAKQ--GVYCRPTL--QEE 841
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L DS+ R +++TGPNMGGK
Sbjct: 842 RKILIKNGRHPVIDV-------LLGEQDQF-VPNSTDLSGDSE----RVMIITGPNMGGK 889
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L ++AQ+G +VP E + + D IFTR+GA D I G+STF+ E T+TA +
Sbjct: 890 SSYIKQVALITVMAQVGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEI 949
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-EFASH 957
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + E +
Sbjct: 950 IRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVESLTLFVTHYPPVCELEKSYS 1009
Query: 958 PHVTLQHMACAFKSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
V HM + G+++ ++FLY++T G SYGL VA +A VP ++
Sbjct: 1010 QQVGNYHMGFLVNEDESKQDAGEEDQVPDSVIFLYQITRGIAARSYGLNVAKLADVPGEI 1069
Query: 1013 VEAAS 1017
++ A+
Sbjct: 1070 LKKAA 1074
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 186/445 (41%), Gaps = 70/445 (15%)
Query: 233 KFEWLDPSKIRDAN-RRRPDDPLYDKRT--LYIPPEALKKMSASQKQYWNVKSQYMDVLL 289
KF PS+ N ++ D +KRT +Y P E QY +K Q D +L
Sbjct: 185 KFSHFGPSQRSYENLQKTSDSKPSNKRTKSIYTPLEL---------QYLEMKQQQKDAIL 235
Query: 290 FFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGR 349
+ G Y + DAEI +EL+ L I + V +LVA+GYKVG
Sbjct: 236 CVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGV 293
Query: 350 IEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------ 391
++Q ET+ +A + +S+ SRKL + T ST + + P DAV
Sbjct: 294 VKQTETAALKAIGDNKSSLFSRKLTALYTKSTLIGEDVNPLVKLDDAVNVDEVMTDTSTS 353
Query: 392 HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+LL I KE G+V G V A V + D AS + L ++ + P E+
Sbjct: 354 YLLCICENKENVKDKKKGNVSIGIVGVQPATGEVVFDSFQDSASRSELETRILCLQPVEL 413
Query: 449 IYENRGLCKEAQKALRKFSAGS--------------------AALELTPAMA--VTDFLD 486
+ + L ++ + + + +A S A E+T A V D D
Sbjct: 414 LLPS-DLSEQTETLIHRVTAMSVRDDRIRVERMKNVYFEYSHAFQEVTEFYAKDVVDIKD 472
Query: 487 ASEVKKLVQLNGYFNGSSSPWSKA-----LENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
+ ++ L S + + LE V+ F L G + ++ + LR
Sbjct: 473 SQSFSDIINLEKPVICSLAAIIRYLKEFNLEKVLSKPKNFKQLSGEMEFMT--INGTTLR 530
Query: 542 NGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EY 599
N +IL + ++ G + LD TS G+R L+ W+ PL + IN RLD V E
Sbjct: 531 NLEILQNQT---DMKTKGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 587
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLL 624
L S V + +LRKLPD+ER L
Sbjct: 588 LHSESSVFGQIENHLRKLPDIERGL 612
>gi|397677107|ref|YP_006518645.1| DNA mismatch repair protein mutS [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395397796|gb|AFN57123.1| DNA mismatch repair protein mutS [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 869
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 182/334 (54%), Gaps = 31/334 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
++++ L+ LIE +EK + A++ +DV FA A + PA
Sbjct: 524 IESKHLACLIESTLEKRDNIAACADALARLDVSTGFADCA-----------VQKNWTRPA 572
Query: 782 VRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V D+ I+G HP AL ++G V ND L D R L+TGPNMGGK
Sbjct: 573 V--DDSCCFDVIQG-RHPVVENALAKSGERFVANDTNL-----DPKNRLWLVTGPNMGGK 624
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST LR L +LAQ G FVP E + L D +F+R+GA+D + G STF+VE ETA++
Sbjct: 625 STFLRQNALLAVLAQTGSFVPAEKARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAI 684
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L +AT S VILDE+GRGTST+DG AIA+AV + + CR LFATHYH LT+ + P
Sbjct: 685 LSQATNRSFVILDEVGRGTSTYDGLAIAWAVVEAVHDINACRCLFATHYHELTQLTSRLP 744
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
++L H+ +GD LV L+ + GA SYG++VA +AG+P V++ AS
Sbjct: 745 ALSLHHVRA-------KEWQGD--LVLLHEMAEGAADRSYGIEVARLAGLPPVVLKRASE 795
Query: 1019 AALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIV 1052
++ S G++ SS S+ + +T++
Sbjct: 796 VLAQLENSSGKNSDSSANLSDLPLFGVQAFQTVL 829
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 169/371 (45%), Gaps = 36/371 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY+ +K+Q D LLF+++G F+EL+ DA+ LD +T G + G+
Sbjct: 3 EQYYELKAQAQDCLLFYRMGDFFELFFDDAKKASAILDIALTSRGTHIEESIPMCGVPIH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKAR-HTNSVISRKLVNVVTPST-TVDGTIGPD 389
+ + +L+ G +V +Q+ET +AK R + +++ R ++ VVT T T + +
Sbjct: 63 AAESYLARLIKAGCRVAIADQVETPAEAKKRGGSKALVKRAIIRVVTAGTLTEEALLDSR 122
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
A + L + G D +G A D + R +++ L + L ++S EVI
Sbjct: 123 AANWL-VAVARAGSD-----FGLAAADISTGRFETIALSE----GRLDSELARLSAAEVI 172
Query: 450 YENRGLCKEAQK-------ALRK--FSA--GSAALELTPAMAVTDFLDASEVKKLVQLNG 498
+ +EA K AL F++ G A L+ ++ D +L ++G
Sbjct: 173 APESLVQQEAYKNRIPQAVALSNECFNSPHGEARLKSLFKISTLDGFGIFSRAELAAIDG 232
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
W L+ Q + F ++ +++D R+ L V + R
Sbjct: 233 LL-----AW---LDRAGQGKLPFLQQPVRRAYADHMLIDAATRSS--LELTVSTEGRRDG 282
Query: 559 GQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
+D VT +G RLL + + PL D++ I+ RLD+VE+ ++ + V + L+ P
Sbjct: 283 SLVSSIDHTVTGAGARLLTADLGAPLMDIDVIHKRLDLVEFFFYDTLLREDVRELLKGSP 342
Query: 619 DLERLLGRVKA 629
DL R+LGR+ A
Sbjct: 343 DLARVLGRLVA 353
>gi|424845509|ref|ZP_18270120.1| DNA mismatch repair protein MutS [Jonquetella anthropi DSM 22815]
gi|363986947|gb|EHM13777.1| DNA mismatch repair protein MutS [Jonquetella anthropi DSM 22815]
Length = 848
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 173/328 (52%), Gaps = 38/328 (11%)
Query: 700 LTQFEAAIDSDFPDYQNH------DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
L E I + +Y++ + D++ L + ++ + + A++ +DV
Sbjct: 482 LVNGERFITPELKEYEDRRLSAESHIKDIENRIFDELCQAVMDATAALQQTGQALARLDV 541
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPN 812
L SFA AS+ G RP+ P L+I+ HP G+P VPN
Sbjct: 542 LASFADVASV--GQYCRPVFSPDR-------------LEIRAGRHPVVEASLRGVPYVPN 586
Query: 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
D+ + D R L+TGPNM GKST LRA + I+AQ+G FVP E L L D +F
Sbjct: 587 DLTM-----DRTRRVGLVTGPNMAGKSTYLRAAAIIQIMAQMGAFVPAEKASLPLVDRLF 641
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
TR+GA D + G STF+VE ETA++L AT DSLVILDE+GRGTST+DG +IA+A
Sbjct: 642 TRIGARDELSRGNSTFMVEMIETAAILNNATSDSLVILDEVGRGTSTYDGMSIAWAALEY 701
Query: 933 LVERINCR--LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
L + R +LFATHYH LT+ L+ + S S+ D E+ FL+ +
Sbjct: 702 LHGQGGFRPWVLFATHYHELTR---------LEETLDGLFNLSMAVSEADGEVRFLHHVQ 752
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASH 1018
G SYG++VA +AG+P+ VV AS
Sbjct: 753 EGPADRSYGVEVARLAGLPRVVVRRASE 780
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 151/351 (43%), Gaps = 57/351 (16%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL-SGVGKCRQVG 327
KM+ +QY K++Y D LL F++G FYE + DA +ELD +T G K G
Sbjct: 7 KMTPMMRQYLEWKNKYPDCLLLFRMGDFYETFFDDARTVSRELDLTLTARDGDKKLPMAG 66
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV--DGT 385
+ +D + +L+ +GY+V EQ+ + +++ R+++ VVTP T + D +
Sbjct: 67 VPYHAVDGYLARLIEKGYRVAICEQMSEPD------GRTLVDREVIRVVTPGTWLPEDAS 120
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+ +L KE + AF+ ++ V V D + L+ +P
Sbjct: 121 LNASLAAVLPGKE----------TWAAAFLAPSSPHVRVALAGPD----EILGLITGEAP 166
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAAL---ELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+E++ ALR S L E +P + ++ L N
Sbjct: 167 RELLVP----ASSCPPALRGGSWSVLELPKSEFSPTSGQSRLAARWGLRDLAPFGLPEND 222
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHL---------SRLMLDDVLR-NGDILPYKVYR 552
+ A + M+ + FS ISHL S L LD + N ++L
Sbjct: 223 PRIGAAAAAVSYME-ETSFSK----ISHLQGIVCLTSESYLHLDQSAQMNLELL------ 271
Query: 553 DCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
G +L+ L+ C T++G+RLL+ WI PL+D +N RLD VE L+
Sbjct: 272 ----NGGASLFAFLNRCRTTAGRRLLQDWIVRPLRDERAVNRRLDAVEALL 318
>gi|169601270|ref|XP_001794057.1| hypothetical protein SNOG_03496 [Phaeosphaeria nodorum SN15]
gi|160705896|gb|EAT88701.2| hypothetical protein SNOG_03496 [Phaeosphaeria nodorum SN15]
Length = 1104
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 142/238 (59%), Gaps = 10/238 (4%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L I G HP VPND+ L D+ R LL+TGPNMGGKS+ +R+ L I
Sbjct: 844 LDIVGGRHPMVEQLLLDAYVPNDVHLSGDAT----RALLVTGPNMGGKSSYVRSAALIAI 899
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+ Q+G +VP E L + D +FTR+GA D ++ GESTF+VE ETA +L+ AT SL+IL
Sbjct: 900 MGQIGSYVPAESAKLGMLDAVFTRMGALDNMLKGESTFMVELNETADILRSATSRSLIIL 959
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTSTFDG AIA AV ++ + LF THY L + + L+++ +F+
Sbjct: 960 DELGRGTSTFDGVAIAEAVLDYVIRDVGALTLFITHYQHLAR-LQDRFNGELKNVHMSFE 1018
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
G +E+VFLY + G SYGL VA +A VP+KV+E A + +++S+G
Sbjct: 1019 ERD-----GGKEVVFLYEVAEGTSHRSYGLNVARLAKVPEKVIETAEVKSSELEESMG 1071
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 100/414 (24%), Positives = 164/414 (39%), Gaps = 72/414 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + QY ++K ++MD ++ +VG ++ + DA KEL D +
Sbjct: 217 KLTPMELQYLDIKRKHMDTVIVMEVGYKFKFFGEDARTASKELGIVCIPGKFRYDEHPSE 276
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + V++LV +KVG + QLET+ +A + N+ RKL N+
Sbjct: 277 AHYDRFASASFPVHRLQVHVKRLVKANHKVGVVRQLETAALKAAGNNRNTPFVRKLTNLY 336
Query: 377 TPSTTVDG-------TIGPDAV-HLLAIKEGNC---GPDNGSVVYGFAFVDCAALRVWVG 425
T T VD T G A +LL + E N G D V G V A +
Sbjct: 337 TKGTYVDDIEGLETPTAGAQATGYLLCVTETNAKGWGTDE-KVQVGLVAVQPATGDIIYD 395
Query: 426 TINDDASCAALGALLMQVSPKEV--------IYENRGLCKEAQKALRKFSAGSAALELTP 477
D + + L+ ++P E ++ +R + +K K A A ++
Sbjct: 396 DFEDGFMRSEIETRLLHIAPAEFLIVASKTNVFGDRSRVERVEKP--KTMAAQAYSHISN 453
Query: 478 AMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSA-LGGLISHLSRLML 536
A D + +S Q G G+ L+ V Q + L +I++LS L
Sbjct: 454 FYA--DKMKSS------QEGGSEQGA------ILDKVHQLSEHVTICLSAMITYLSDYAL 499
Query: 537 DDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSSGKRLL 576
+ V R + ++G TL +D T G+RLL
Sbjct: 500 EHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDYTSKGSLFWTMDRTKTRFGQRLL 559
Query: 577 RSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLERLLGRV 627
R W+ PL D E + R+ VE L + + V V L K+ DLE++L R+
Sbjct: 560 RKWVGRPLIDKERLEERIAAVEELKEGEHTIAVDKVKFLLGKIKTDLEKVLIRI 613
>gi|189030712|sp|A9KG24.1|MUTS_COXBN RecName: Full=DNA mismatch repair protein MutS
Length = 859
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 168/318 (52%), Gaps = 28/318 (8%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E L++ IEK + AI+ +DVL + A A + N
Sbjct: 532 EKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNA 577
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
Q P++KI+ HP +PND L E R L++TGPNMGGKST +
Sbjct: 578 PQFCDYPIIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYM 632
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R T L +LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L A
Sbjct: 633 RQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNA 692
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV++DE+GRGTSTFDG ++AYA L ++ LFATHY LT ++ P V
Sbjct: 693 TEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKN 752
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
H+ + +++++FL+ L G +SYGLQVA +AG+P+ V++ A
Sbjct: 753 VHLDAV---------EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEE 803
Query: 1023 MKKSIGESFKSSEQRSEF 1040
++ + + +Q F
Sbjct: 804 LENPVISETQQPQQNELF 821
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 81
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 82 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 136
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 137 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 185
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 186 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 236
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 237 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 287
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 288 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 346
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 347 ENLRHIGDLERIVARIALR 365
>gi|449116841|ref|ZP_21753287.1| DNA mismatch repair protein mutS [Treponema denticola H-22]
gi|448953096|gb|EMB33892.1| DNA mismatch repair protein mutS [Treponema denticola H-22]
Length = 884
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 159/279 (56%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 555 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNITGGRHPVV--ENHL 599
Query: 806 -GGLPVPNDILL--GEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE++ D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 600 RAGDFVPNSIKLLSGENTNSEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 659
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 660 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 719
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ H + + + +
Sbjct: 720 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR--LEHEKIINLKL---------DVLEA 768
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 769 EGKIVFLKKVVPGAAGNSYGIHVAGLAGIPQSVLTRAEN 807
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 160/384 (41%), Gaps = 56/384 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ GI
Sbjct: 3 RQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNNVPMCGIPYHAAK 60
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G K+ EQ + RK+V V+TP T D + + +
Sbjct: 61 IYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFLEQGSNNY 114
Query: 394 LAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
LA EGN G D G A++D + + + +++PK
Sbjct: 115 LAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKEIGRINPK 171
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV------Q 495
E++ + Q +F A L P+M + D S K+L
Sbjct: 172 EILIQ--------QSIQSEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTEN 223
Query: 496 LNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR-NGDILP 547
L G+ + SP + LE + DI + + + + LDD R N ++L
Sbjct: 224 LKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTRKNLELLT 283
Query: 548 YKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
LR + + L V T+ G RLLR I +PL+ + I+ RLD V L K+
Sbjct: 284 ------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKKEIDKRLDKVNSLFKD 337
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+ ++ + L + D+ERL GR+
Sbjct: 338 GKASAIIRETLSSILDIERLSGRI 361
>gi|449104170|ref|ZP_21740911.1| DNA mismatch repair protein mutS [Treponema denticola AL-2]
gi|448963688|gb|EMB44364.1| DNA mismatch repair protein mutS [Treponema denticola AL-2]
Length = 883
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 160/279 (57%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 554 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNITGGRHPVV--ENHL 598
Query: 806 -GGLPVPNDILL--GEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE++ D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 599 RAGDFVPNSIKLLSGENTNPEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 658
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 659 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 718
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ L+H + + +
Sbjct: 719 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR---------LEHEKII--NLKLDVLEA 767
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 768 EGKIVFLKKVVPGAAGNSYGIHVAGLAGIPQSVLTRAEN 806
Score = 79.7 bits (195), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 160/384 (41%), Gaps = 56/384 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ GI
Sbjct: 2 RQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCGIPYHAAK 59
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G K+ EQ + RK+V V+TP T D + + +
Sbjct: 60 IYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFLEQGSNNY 113
Query: 394 LAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
LA EGN G D G A++D + + + +++PK
Sbjct: 114 LAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKEIGRINPK 170
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV------Q 495
E++ + Q +F A L P+M + D S K+L
Sbjct: 171 EILIQ--------QSIQSEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTEN 222
Query: 496 LNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR-NGDILP 547
L G+ + SP + LE + DI + + + + LDD R N ++L
Sbjct: 223 LKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFISLDDSTRKNLELLT 282
Query: 548 YKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
LR + + L V T+ G RLLR I +PL+ + I+ RLD V L K+
Sbjct: 283 ------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKKEIDKRLDKVNSLFKD 336
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+ ++ + L + D+ERL GR+
Sbjct: 337 GKASAIIRETLSSILDIERLSGRI 360
>gi|299115252|emb|CBN74093.1| MutS protein homolog 2A [Ectocarpus siliculosus]
Length = 828
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 175/326 (53%), Gaps = 37/326 (11%)
Query: 725 ETLSILIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
E S L+E +E A+ + ++ + +S +D+L SFA A+++ + RP +
Sbjct: 476 EKQSGLVEKAVETAATYLPLVESASALVSELDILVSFADVAALAPTELVRPTM------- 528
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
+D G VLK+ G HP ++ +PND + D +++TGPNMGGKST
Sbjct: 529 ---KDKGTGVLKVMGCRHPCLEWQDEMNFIPNDYDMSSDG----ASFVVVTGPNMGGKST 581
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R ++AQ+G FVPCE +S+ D +F R+GA D G STF+ E E ++++
Sbjct: 582 YIRTLGAVTVMAQVGSFVPCESAEMSVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIIS 641
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
A++DSL+I+DELGRGTSTFDG+ +A+++ +V+ LFATH+H +T V
Sbjct: 642 AASKDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTTQAPCLFATHFHEMTTMAEHDKRV 701
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ K + ++ LY + G C ES+G+ VA MAG P+ V+ A A
Sbjct: 702 KNMHVTAQAKED---------KITMLYEVREGPCLESFGIHVATMAGFPRAVIREAKRKA 752
Query: 1021 L-------AMKKSIGESFKSSEQRSE 1039
AM+++ GE + EQR +
Sbjct: 753 ATLENFEEAMERTGGE---TGEQRKK 775
Score = 43.1 bits (100), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ--YLRKLPDLE 621
L+ C T G RLL W+ PL D E I R D+V L+K+ + Q L+ PDL+
Sbjct: 225 LNRCKTKMGSRLLERWLRQPLTDKEEIERRHDMVG-LLKDEAGLRGSLQDGPLKACPDLD 283
Query: 622 RLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSL 681
L K ++Q ++ + V + V FG ++ G + E I
Sbjct: 284 TL----KTKMQRKKAGLMEVFKLYVFSRSVHTFGDVLSGHFGEDEGEEETETETLINDKF 339
Query: 682 SRIFKPPIFDGSDGLDKFLTQFEAAIDSD-FPD 713
+ F +DG +FL E +D D PD
Sbjct: 340 VKGFAKL----ADGFSRFLQLVEHVLDMDALPD 368
>gi|449129626|ref|ZP_21765856.1| DNA mismatch repair protein mutS [Treponema denticola SP37]
gi|448945674|gb|EMB26544.1| DNA mismatch repair protein mutS [Treponema denticola SP37]
Length = 884
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 159/279 (56%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 555 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNITGGRHPVV--ENHL 599
Query: 806 -GGLPVPNDILL--GEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE++ D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 600 RAGDFVPNSIKLLSGENTNSEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 659
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 660 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 719
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ H + + + +
Sbjct: 720 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR--LEHEKIINLKL---------DVLEA 768
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 769 EGKIVFLKKVVPGAAGNSYGIHVAGLAGIPQSVLTRAEN 807
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 107/449 (23%), Positives = 188/449 (41%), Gaps = 64/449 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ GI
Sbjct: 3 RQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCGIPYHAAK 60
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G K+ EQ + RK+V V+TP T D + + +
Sbjct: 61 IYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFLEQGSNNY 114
Query: 394 LAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
LA EGN G D G A++D + + + +++PK
Sbjct: 115 LAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKEIGRINPK 171
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV------Q 495
E++ + Q +F A L P+M + D S K+L
Sbjct: 172 EILIQ--------QSIQSEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTEN 223
Query: 496 LNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR-NGDILP 547
L G+ + SP + LE + DI + + + + LDD R N ++L
Sbjct: 224 LKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTRKNLELLT 283
Query: 548 YKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
LR + + L V T+ G RLLR I +PL+ + I+ RLD V L K+
Sbjct: 284 ------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKKEIDKRLDKVNSLFKD 337
Query: 604 SEVVMVVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLR 662
+ ++ + L + D+ERL GR+ + + L K+ L +K+ GSL++ +
Sbjct: 338 GKASAIIRETLSSILDIERLSGRIAMQKTHGKDLLAL----KQSLNSVIKM-GSLIQEKK 392
Query: 663 IAMDLLMLMHKEGHIIPSLSRIFKPPIFD 691
++ L L +E ++ + + + I D
Sbjct: 393 --LNFLQLSDEEKKLLTEIRNLLENSIDD 419
>gi|449119093|ref|ZP_21755492.1| DNA mismatch repair protein mutS [Treponema denticola H1-T]
gi|449121484|ref|ZP_21757831.1| DNA mismatch repair protein mutS [Treponema denticola MYR-T]
gi|448950083|gb|EMB30906.1| DNA mismatch repair protein mutS [Treponema denticola MYR-T]
gi|448951019|gb|EMB31835.1| DNA mismatch repair protein mutS [Treponema denticola H1-T]
Length = 884
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 159/279 (56%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 555 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNIIGGRHPVV--ENHL 599
Query: 806 -GGLPVPNDILL--GEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE+S D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 600 RAGDFVPNSIKLLSGENSNSEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 659
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 660 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 719
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ H + + + +
Sbjct: 720 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR--LEHEKIINLKL---------DVLEA 768
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 769 EGKIVFLKKVIPGAAGNSYGIHVAGLAGIPQSVLTRAEN 807
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 160/384 (41%), Gaps = 56/384 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ GI
Sbjct: 3 RQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCGIPYHAAK 60
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G K+ EQ + RK+V V+TP T D + + +
Sbjct: 61 IYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFLEQGSNNY 114
Query: 394 LAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
LA EGN G D G A++D + + + +++PK
Sbjct: 115 LASVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKEIGRINPK 171
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV------Q 495
E++ + Q +F A L P+M + D S K+L
Sbjct: 172 EILIQ--------QSIQSEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLCSTFGTEN 223
Query: 496 LNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR-NGDILP 547
L G+ + SP + LE + DI + + + + LDD R N ++L
Sbjct: 224 LKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTRKNLELLT 283
Query: 548 YKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
LR + + L + T+ G RLLR I +PL+ + I+ RLD V L K+
Sbjct: 284 ------NLRDNSPSYSLFESINYTKTAMGTRLLRRRISYPLRSKKEIDKRLDKVNSLFKD 337
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+ ++ + L + D+ERL GR+
Sbjct: 338 GKASAIIRETLSSILDIERLSGRI 361
>gi|431592259|ref|ZP_19521495.1| DNA mismatch repair protein mutS [Enterococcus faecium E1861]
gi|430591884|gb|ELB29911.1| DNA mismatch repair protein mutS [Enterococcus faecium E1861]
Length = 881
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF ++KA Q +V+ AIS DVL+SFA +
Sbjct: 497 PELKELETQILEAEEKSVDLEYQLFLAVREEVKKAIQPLQVLAKAISAADVLQSFATISE 556
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP ++ K+ + +D PV++ K L H +PN + + ED
Sbjct: 557 RYQYV--RPELVS-DKHQLLIKDGRHPVVE-KVLGHQEY--------IPNSVEMAEDE-- 602
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L V++AQ+GCFVP + VL + D IFTR+GA+D ++
Sbjct: 603 ---MILLITGPNMSGKSTYMRQLALTVLMAQMGCFVPAKEAVLPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRYATPNSLILFDELGRGTATYDGMALAQAIIEYIHRHVQAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT P + H+ K D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELTILEKELPQLKNVHVGAVEK---------DGEVVFLHKMMDGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++E A+
Sbjct: 771 AKIAGLPANLLERAA 785
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 112/464 (24%), Positives = 194/464 (41%), Gaps = 74/464 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY ++K+QY D LF+++G FYEL+ DA + L+ +T + G+
Sbjct: 12 EQYLSIKAQYQDAFLFYRLGDFYELFYEDAIKASQLLELTLTSRNRNAEEPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
++ L+ +GYKV EQ+E + T ++ R+++ +VTP T +D G D
Sbjct: 72 AAQGYIDALIEKGYKVAICEQVE-----DPKTTKGMVKREVIQLVTPGTVMDSKGLSAKD 126
Query: 390 AVHLLA-IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
L A + +GN +GFA+ D + + ++D+ + + L KE+
Sbjct: 127 NNFLTAVVSQGNE--------FGFAYADLSTGELKTARLHDEEAVLNEASAL---QTKEL 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTP----------AMAVTDFLDASEVKKLVQLNG 498
+ L E LR+ +G L + + ++ +D E + +L
Sbjct: 176 V-----LGSEITDTLREQLSGRLGLVFSQQNEMEENAEFSFLTSELVDPLEKEATGKLLT 230
Query: 499 YF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
Y S + KA+E H + L L +R G
Sbjct: 231 YLAVTQKRSLAHIQKAVEYQPDHFLKMDYYSKF-----NLELSQSIRTG----------- 274
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ W+ PL + I R ++V L+ + + +
Sbjct: 275 -KKHGTLLWLLDETKTAMGGRLLKQWLDRPLIQAKQIKARQEMVASLLDSYFERIDLQSA 333
Query: 614 LRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIA--MDLLML 670
L K+ DLERL GRV V I L K +QV + L++G+ LL
Sbjct: 334 LTKVYDLERLAGRVAFGNVNGRDLIQL-----KTSLEQVPMIRGLIEGIDQGQWQSLLSE 388
Query: 671 MHKEGHIIPSLSRIFK--PP--IFDGS---DGLDKFLTQFEAAI 707
M H++ + + + PP I +G+ DG ++ L + +A+
Sbjct: 389 MQPMDHLVQLIDQAIQDDPPLQITEGNIIKDGFNEQLDTYRSAM 432
>gi|385839549|ref|YP_005877179.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
A76]
gi|358750777|gb|AEU41756.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
A76]
Length = 840
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 28/270 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TEGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP + L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAKTANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKAT SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + E I + LFATHYH LT H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHEYIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++T G +SYG+ VA +AG+PQ ++E A
Sbjct: 747 HKITDGPADKSYGIHVAKIAGLPQTLLERA 776
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 74/386 (19%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAATEYIDKLVYLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D + Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKAKRYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGL-CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ +E++ G EAQ + E + +++ + E L++L+G
Sbjct: 166 LKAREIVV---GFPLDEAQVKV---------FERQMNLLISEQFEIPE-NLLIELSGL-- 210
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ- 560
ALEN A L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 -------TALEN--------QAASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFAT 254
Query: 561 -----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 255 KSSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFL 314
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 315 DHFFERSDLIEALKGVYDLERLASRV 340
>gi|408411547|ref|ZP_11182693.1| DNA mismatch repair protein mutS [Lactobacillus sp. 66c]
gi|407874286|emb|CCK84499.1| DNA mismatch repair protein mutS [Lactobacillus sp. 66c]
Length = 857
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 179/317 (56%), Gaps = 40/317 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + H+ L+AE+ S +E LF + + E I ++ +DVL +FA A
Sbjct: 496 PELKEHENLILEAESKSTELEHDLFAKLRDRIKEHIPELQKLGRQLAALDVLVAFAEDAE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDS 820
+ RP A +Q+ + IK HP A+ E G +PND+ + ED+
Sbjct: 556 EKNYC--RPTF-------AKKQE-----IDIKNGRHPVVEAVLETGSY-IPNDLTMDEDT 600
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
L+TGPNM GKST +R L I+AQ+G FVP E L + D IFTR+GA D
Sbjct: 601 S-----IYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPAEAATLPIFDQIFTRIGAADD 655
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940
+ +G+STF+VE +E LQ+A+ SL++ DE+GRGT+T+DG A+A A+ + L +++ +
Sbjct: 656 LYSGKSTFMVEMSEANDALQRASSRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAK 715
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
LFATHYH LT+ + PH+ H+ ++ + +L+FL+++ G +SYG+
Sbjct: 716 TLFATHYHELTELEQTLPHLKNIHVGA---------TQENGKLIFLHKILPGPADQSYGI 766
Query: 1001 QVAVMAGVPQKVVEAAS 1017
VA +AG+P++V+ AS
Sbjct: 767 HVAKLAGLPREVLREAS 783
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 165/379 (43%), Gaps = 46/379 (12%)
Query: 262 IPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG 321
+P EA M +QY+ +KS+Y D LF++VG FYELYE DA G + L+ +T
Sbjct: 1 MPKEATTPM---MQQYYQIKSEYPDAFLFYRVGDFYELYEDDAIKGAQILELTLTHRSNK 57
Query: 322 KCRQV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTP 378
+ G+ +D + LV +GYKV EQLE ++AK ++ R ++ +VTP
Sbjct: 58 SANPIPMAGVPHMAVDSYINTLVEKGYKVAICEQLEDPKKAKG-----MVKRGIIQLVTP 112
Query: 379 STTVDGTIGPD----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
T + GPD + +L ++ G G YG A+ D + V+ T+ +
Sbjct: 113 GTKM--AQGPDEGQESNYLTSVAGGRGG-------YGLAYSDLSTGEVFATTVPNFEEVV 163
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD-----ASE 489
L+ + KEV++ E + + S EL A +++ E
Sbjct: 164 ---NELLSLRSKEVVFAGEMPADERETLEKANITISQPAELAGQHAEISYVEQLLSSPLE 220
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
K QL Y + L+ +++G +L M + V RN ++
Sbjct: 221 KKATRQLVVYLLSTQKRSLAHLQVAESYEVG--------QYLQ--MSNTVQRNLELTQSA 270
Query: 550 VYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+ G + LD T+ G RLL+ W+ PL E I R ++V+ L+ N
Sbjct: 271 T---TGKKQGSLFWVLDKTHTAMGGRLLKQWLSRPLLSKEKILARQEMVQALIDNYFTRE 327
Query: 609 VVAQYLRKLPDLERLLGRV 627
V L+ + DLERL GR+
Sbjct: 328 NVVDALKGVYDLERLSGRI 346
>gi|419759908|ref|ZP_14286193.1| DNA mismatch repair protein MutS [Thermosipho africanus H17ap60334]
gi|407514947|gb|EKF49733.1| DNA mismatch repair protein MutS [Thermosipho africanus H17ap60334]
Length = 828
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 132/209 (63%), Gaps = 14/209 (6%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPNDI + D L R ++TGPNM GKST +R L ++AQ+GCFVP + L + D
Sbjct: 587 VPNDIYM-----DSLRRMYIITGPNMSGKSTYIRQVGLIAVMAQIGCFVPAKSAKLPIFD 641
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+GA D I TG+STFLVE +E A +L KAT+DSLV+LDE+GRGTSTFDG +IA+A+
Sbjct: 642 RIFTRMGARDDISTGKSTFLVEMSEVALILSKATKDSLVLLDEVGRGTSTFDGISIAWAM 701
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+ I C+ +FATH+ LT+ L + K+ + + + +VFL+++
Sbjct: 702 SEYIYNEIKCKTIFATHFTELTE---------LSDVYNGIKNLTIEVEETNDGIVFLHKV 752
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASH 1018
G SYG++VA +AGVP VVE A
Sbjct: 753 VDGVADRSYGIEVAKIAGVPDGVVERAKE 781
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/374 (25%), Positives = 170/374 (45%), Gaps = 47/374 (12%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
LK ++ KQY ++K Y D ++ F++G FYE + DAEI K L+ I L+
Sbjct: 12 LKNLTPMMKQYMDIKKNYEDAIVLFRLGDFYEAFFEDAEIISKVLN--IVLTKRQNAPMA 69
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGT 385
GI +D+ ++KLV GYKV EQ+E QAK ++ R++ V+TP T + +
Sbjct: 70 GIPHHALDNYLKKLVDSGYKVAICEQMEDPSQAKG-----IVRREVTRVITPGTLIEEDL 124
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVG---TINDDASCAALGALLMQ 442
+ + +L+A+ +N + AFVD + ++V TIND ++
Sbjct: 125 LSSENNYLMAV----AFREN----FNTAFVDVSTGELFVKDFETINDLIDFVSI------ 170
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD-ASEVKKLVQLNGY-- 499
V+ ++I C+E K + + +E F D E K+V ++ +
Sbjct: 171 VNISQII------CEENIFEELKDNLPNKFIEKLDDWYFEGFEDKVKETFKIVSIDHFEL 224
Query: 500 FNGSSSPWS---KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
NG K LE + ++ L ++ + N ++P +
Sbjct: 225 SNGQLRVLGALLKYLEYTLMSNLALEEPKKLEESKWMILDSKTVDNLSLIPGE------- 277
Query: 557 MDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
G+ LY L+ T+ G RLL+ WI PLK + I R ++V+ + ++ + +YL
Sbjct: 278 -KGKNLYDILNKTKTAMGSRLLKKWILQPLKVKKDIIERQEIVDAFFNDRLLLNEIREYL 336
Query: 615 RKLPDLERLLGRVK 628
+ D+ER+L R++
Sbjct: 337 NGIFDVERILTRLQ 350
>gi|190359894|sp|Q0UXL8.3|MSH3_PHANO RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=MutS
protein homolog 3
Length = 1119
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 142/238 (59%), Gaps = 10/238 (4%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L I G HP VPND+ L D+ R LL+TGPNMGGKS+ +R+ L I
Sbjct: 859 LDIVGGRHPMVEQLLLDAYVPNDVHLSGDAT----RALLVTGPNMGGKSSYVRSAALIAI 914
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+ Q+G +VP E L + D +FTR+GA D ++ GESTF+VE ETA +L+ AT SL+IL
Sbjct: 915 MGQIGSYVPAESAKLGMLDAVFTRMGALDNMLKGESTFMVELNETADILRSATSRSLIIL 974
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTSTFDG AIA AV ++ + LF THY L + + L+++ +F+
Sbjct: 975 DELGRGTSTFDGVAIAEAVLDYVIRDVGALTLFITHYQHLAR-LQDRFNGELKNVHMSFE 1033
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
G +E+VFLY + G SYGL VA +A VP+KV+E A + +++S+G
Sbjct: 1034 ERD-----GGKEVVFLYEVAEGTSHRSYGLNVARLAKVPEKVIETAEVKSSELEESMG 1086
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 161/419 (38%), Gaps = 67/419 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + QY ++K ++MD ++ +VG ++ + DA KEL D +
Sbjct: 217 KLTPMELQYLDIKRKHMDTVIVMEVGYKFKFFGEDARTASKELGIVCIPGKFRYDEHPSE 276
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + V++LV +KVG + QLET+ +A + N+ RKL N+
Sbjct: 277 AHYDRFASASFPVHRLQVHVKRLVKANHKVGVVRQLETAALKAAGNNRNTPFVRKLTNLY 336
Query: 377 TPSTTVDG-------TIGPDAV-HLLAIKEGNC---GPDNGSVVYGFAFVDCAALRVWVG 425
T T VD T G A +LL + E N G D V G V A +
Sbjct: 337 TKGTYVDDIEGLETPTAGAQATGYLLCVTETNAKGWGTDE-KVQVGLVAVQPATGDIIYD 395
Query: 426 TINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL 485
D + + L+ ++P E + L K K + SA T +
Sbjct: 396 DFEDGFMRSEIETRLLHIAPAEFLIVG-DLSKATDKLIHHLSASK-----TNVFGDRSRV 449
Query: 486 DASEVKKLVQLNGYFNGSS-------------SPWSKALENVMQHDIGFSA-LGGLISHL 531
+ E K + Y + S+ S L+ V Q + L +I++L
Sbjct: 450 ERVEKPKTMAAQAYSHISNFYADKMKSSQEGGSEQGAILDKVHQLSEHVTICLSAMITYL 509
Query: 532 SRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSS 571
S L+ V R + ++G TL +D T
Sbjct: 510 SDYALEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDYTSKGSLFWTMDRTKTRF 569
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLERLLGRV 627
G+RLLR W+ PL D E + R+ VE L + + V V L K+ DLE++L R+
Sbjct: 570 GQRLLRKWVGRPLIDKERLEERIAAVEELKEGEHTIAVDKVKFLLGKIKTDLEKVLIRI 628
>gi|414075212|ref|YP_007000429.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413975132|gb|AFW92596.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 840
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 28/270 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVIAE-KQGYI-RPTL-----------TEGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP + L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAKTANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKAT SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + E I + LFATHYH LT H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHEYIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++T G +SYG+ VA +AG+PQ ++E A
Sbjct: 747 HKITDGPADKSYGIHVAKIAGLPQTLLERA 776
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 74/386 (19%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAATEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D + Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKAKRYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGL-CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ +E++ G EAQ + E + +++ + E L++L+G
Sbjct: 166 LKAREIVV---GFPLDEAQVKV---------FERQMNLLISEQFEIPE-NLLIELSGL-- 210
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ- 560
ALEN A L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 -------TALEN--------QAASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFAT 254
Query: 561 -----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 255 KSSLELTENKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFL 314
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 315 DHFFERSDLIEALKGVYDLERLASRV 340
>gi|367013624|ref|XP_003681312.1| hypothetical protein TDEL_0D05170 [Torulaspora delbrueckii]
gi|359748972|emb|CCE92101.1| hypothetical protein TDEL_0D05170 [Torulaspora delbrueckii]
Length = 962
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 18/297 (6%)
Query: 728 SILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
S L++ + +S V+ +S I DVL SFA +S + RP++ + R
Sbjct: 592 STLVKEIVSITLTYSPVLERLSLILANLDVLCSFAHASSYAPIPYIRPIMHGLNTQRKTR 651
Query: 784 QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
N HP ++ + ND+LL +D + L++TGPNMGGKST +R
Sbjct: 652 LTNSR---------HPVLEMQDDVAFISNDVLLEDD----VANFLIITGPNMGGKSTYIR 698
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ ++AQ+GCFVPCE +++ D I R+GA D + G STF+VE ETAS+L+ AT
Sbjct: 699 QVGVISLMAQIGCFVPCEEAEIAVVDAILCRVGAGDSQLKGVSTFMVEMLETASILKNAT 758
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
++SL+I+DELGRGTST+DG+ +A+A+ + +I C LFATH+H LT +V
Sbjct: 759 KNSLIIVDELGRGTSTYDGFGLAWAIAEFIAGKIGCFALFATHFHELTALSDKLSNVQNM 818
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ + N++ D ++ LY++ G +S+G+ VA + PQK+++ A A
Sbjct: 819 HVVAHIEKGDSNHNDSD-DITLLYKVEPGISDQSFGIHVAEVVQFPQKIIKMAKRKA 874
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV-VMVVAQYLRKLPDLER 622
L++C T++G RLL W+ PL DVE I R +VEYL+ E+ M+ + YL +PD+ R
Sbjct: 341 LNNCKTNAGVRLLNEWLKQPLTDVEKITKRHILVEYLIDQLELRQMLQSDYLPAIPDVRR 400
Query: 623 LLGRV 627
+ ++
Sbjct: 401 ITKKL 405
>gi|354491562|ref|XP_003507924.1| PREDICTED: DNA mismatch repair protein Msh3 [Cricetulus griseus]
Length = 1075
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 163/311 (52%), Gaps = 29/311 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + ++ ++ +D + S A A G RP + + K
Sbjct: 744 VLDCSAEWLDFL-ENFGEHYHTLCKAVNHLATVDCIFSLAKVAK--QGNYCRPTLQEEKK 800
Query: 779 NPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
+ IK HP LGE VPN L +DS+ R +++TGPNM
Sbjct: 801 ------------IVIKNGRHPMIDVLLGEQDQF-VPNSTSLSQDSE----RVMIITGPNM 843
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKS+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+T
Sbjct: 844 GGKSSYIKQVALIAIMAQIGSYVPAEEATIGIVDAIFTRMGAADNIYKGRSTFMEELTDT 903
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A +++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ +
Sbjct: 904 AEIIRKATPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 963
Query: 956 SHP-HVTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVP 1009
+P V HM + G+ E V FLY++T G SYGL VA +A VP
Sbjct: 964 CYPEQVGNYHMGFLVDEDESKQESGNMEQVPDSVTFLYQITRGIASRSYGLNVAKLADVP 1023
Query: 1010 QKVVEAASHAA 1020
++++ A+H +
Sbjct: 1024 GEILKKAAHKS 1034
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 171/404 (42%), Gaps = 72/404 (17%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +VK ++ D +L + G Y + DAEI +EL+ L I +
Sbjct: 179 QYIDVKQKHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDH--NFMTASIPTHRLFV 236
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----D 389
V +LVA+GYKVG ++Q+ET+ +A + +SV SRKL + T ST + + P D
Sbjct: 237 HVRRLVAKGYKVGVVKQMETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNPLIRLDD 296
Query: 390 AV------------HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
+V +LL I KE + G++ G V A V D AS
Sbjct: 297 SVNIDEVMTETSTSYLLCIYEEKENSKDKKKGNISIGIVGVQPATGEVVYDCFQDSASRL 356
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-------------AALELTPAM-A 480
L + + P E++ + L + + + + +A S E + A A
Sbjct: 357 ELETRISSLQPVELLLPSH-LSELTEMLIHRATAVSIRDDRIRVERMDNTYFEYSHAFQA 415
Query: 481 VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
VT+F +++V G N S + N+ + I +L +I +L L+ +L
Sbjct: 416 VTEFY----AREVVDSKGSQNFS------GIINLEKPVI--CSLAAIIRYLKEFNLEKIL 463
Query: 541 -RNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSW 579
+ + + +R++G TL LD TS G+R L+ W
Sbjct: 464 SKPENFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKW 523
Query: 580 ICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
+ PL + IN RLD + + L S V + +LRKLPD+ER
Sbjct: 524 VTQPLLKLRDINARLDAISDVLHSESSVFEQIENHLRKLPDIER 567
>gi|346327086|gb|EGX96682.1| DNA mismatch repair protein MSH2 [Cordyceps militaris CM01]
Length = 930
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 166/299 (55%), Gaps = 14/299 (4%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ ++ A+ + V+ ++ VL V S++ A+H P + + P +
Sbjct: 565 TQSGLVHEVVQVAASYCPVLERLA--GVLAHLDVIVSLAHCAVHAPEVYVR---PTMHPP 619
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G ++ G HP ++ + ND+ L D+ L ++TGPNMGGKST +R
Sbjct: 620 GGQGQTRLVGARHPCLELQDDVQFITNDVTLTRDASSFL----IITGPNMGGKSTYIRQI 675
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+LAQ+G FVPC L++ D + R+GA+D + G STF+ E ETA++L+ AT D
Sbjct: 676 GAIALLAQIGSFVPCTSAELTIFDAVLARVGASDSQLKGVSTFMAEMLETANILKSATAD 735
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C LFATH+H LT HP+V H+
Sbjct: 736 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIRCFALFATHFHELTALADQHPNVANLHV 795
Query: 966 ACAFKSNSENYSKGD----QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
A ++ GD +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 796 -TAHIGGADGGKNGDDGAKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKA 853
Score = 43.9 bits (102), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G RLL W+ PL + I R +VE + ++E+ + + +LR +PDL R
Sbjct: 320 LNHCKTPVGSRLLAQWLKQPLMSKDEIEKRQQLVEAFVTDTELRQTMQETHLRSVPDLYR 379
Query: 623 LLGRVK 628
L R +
Sbjct: 380 LSKRFQ 385
>gi|392940989|ref|ZP_10306633.1| DNA mismatch repair protein MutS [Thermoanaerobacter siderophilus
SR4]
gi|392292739|gb|EIW01183.1| DNA mismatch repair protein MutS [Thermoanaerobacter siderophilus
SR4]
Length = 867
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ D ++ IK HP +
Sbjct: 552 IATIDVLISFAEVAE--TNRYIKPIV-----------DYSDRIV-IKEGRHPVIETISDE 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 598 SYVANDIDIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGI 652
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L+ AT SL+ILDE+GRGTST+DG +IA+
Sbjct: 653 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTSTYDGMSIAH 712
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL
Sbjct: 713 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKMRGVRNYNVSVEEREDDIIFLR 763
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHA--ALAMKKSIGESFKSSEQRSEFSSL 1043
++ G +SYG+QV+ +AG+P +VE A +L K I +++ Q+ F+ +
Sbjct: 764 KIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLESDKVIKSELENASQQLAFTQI 821
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 175/378 (46%), Gaps = 52/378 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KL+ +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKG-----LVKRDVVRIYTPGTI----INPESM 118
Query: 392 ------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+L+++ +G DN YG VD ++ + + + + + +P
Sbjct: 119 DEKTNNYLVSVFKGR---DN----YGICAVDVTTGDLYATELKNCKDIKRVYDEITKYAP 171
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E+I N K K ++ F + A+ + LD E KL++ FN S
Sbjct: 172 SEII-ANEDFLKN-NKYIKIFKNNNCAVNIYEKQ-----LDYEEKIKLIETQ--FNKKSE 222
Query: 506 PWSKALENVMQHDIG--FSALGGL----ISHLSRLML----------DDVLRNGDILPYK 549
+ M + + FS L L + H+++L++ + ++N +IL
Sbjct: 223 ELGIKDKLYMANSLATLFSYLQELQKTALKHINKLLIYEDNSYMGLDSNAIKNLEILESN 282
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R+ + LD VT G RLL+ W+ PL + E I+ RL+ VE L + +
Sbjct: 283 --RNKSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLEAVEELFNDYKNRQD 340
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q+L K+ DLERL ++
Sbjct: 341 LKQFLNKIYDLERLASKI 358
>gi|322785419|gb|EFZ12092.1| hypothetical protein SINV_12798 [Solenopsis invicta]
Length = 895
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 184/352 (52%), Gaps = 34/352 (9%)
Query: 689 IFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAI 748
I D + +F ++ DF D +N + E +I + A+ +S + AI
Sbjct: 512 ILDSNKAGIRFRNNRLNELNDDFTDARNKYM-----ERQKDVITEIVGIAAGYSGTVRAI 566
Query: 749 ----SCIDVLRSFAVTASMSSGAMH-RPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803
+C DVL SFA +A++S+ M+ RP ++ + L + + HP
Sbjct: 567 GDVLACFDVLTSFA-SAAISANKMYVRPKMVSSEEGE----------LNLTQVRHPCLEM 615
Query: 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC 863
+ G + NDI D R ++TGPNMGGKST +R+ +A ++A +G FVPC+
Sbjct: 616 QQGVDYIANDIDFKRDQ----YRFCIITGPNMGGKSTYIRSVGVAALMAHIGSFVPCDKA 671
Query: 864 VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGY 923
+SL D I TR+GA D + G STF++E E A++L+ AT +SLVI+DELGRGTST++G
Sbjct: 672 TISLLDCILTRVGADDSQLKGLSTFMMEMIEIAAILKTATCNSLVIIDELGRGTSTYEGC 731
Query: 924 AIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL 983
IA+++ L I LFATH+H +TK P V QH+ + D +L
Sbjct: 732 GIAWSIAEHLARDIKSYCLFATHFHEITKLAEEIPIVKNQHVTALVE---------DDKL 782
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 1035
LY++ G C +S+GL VA MA P V+E A ++ G +F+ S+
Sbjct: 783 TLLYQVKPGICDQSFGLHVAKMANFPLDVIEFAKRKQAELENYEGIAFEGSD 834
Score = 66.2 bits (160), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 36/270 (13%)
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
V ++A+K G G S V G + VD + + V D+ S + L AL++ ++PKE +
Sbjct: 114 VSVIAVKLGTEGK---SRVVGLSCVDVVSTLISVTEFQDNESFSNLEALIVTLAPKECLL 170
Query: 451 ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKA 510
E Q + + + L T+F S + L L + G
Sbjct: 171 IQGEGSYEFQTLKQLIERSNVMVTLRKK---TEFASDSIIDDLNTLIKFKKGQKQNAQSL 227
Query: 511 LENVMQHDIGFSALGGLIS---------HLSRLMLDDVLRNGDILPYKVYRDCLRMDGQT 561
E + ++ SA LI HL++ L+ + ++ I L ++ Q
Sbjct: 228 PE--VNLNLAMSATSALIKYLDLTSDEGHLNQFKLNQIEQSRYIRLDSAAIRALNIEPQA 285
Query: 562 ---------------LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
LD C T+ G RL+ W+ PL+D+ I R D+VE L++N+E+
Sbjct: 286 DAISNLHGNPVSSILTLLDKCRTAQGHRLIAQWVRQPLRDLSLIKERHDIVELLVQNNEL 345
Query: 607 VMVVA-QYLRKLPDLERL---LGRVKARVQ 632
+++ YL+++PDL++L L R K+ +Q
Sbjct: 346 RSILSDDYLKRIPDLQQLAKKLARKKSVLQ 375
>gi|268611650|ref|ZP_06145377.1| DNA mismatch repair protein MutS [Ruminococcus flavefaciens FD-1]
Length = 871
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 31/324 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+A+ + + + K + A++ +DVL SFA A + Q P
Sbjct: 537 LEADIFAEVRDFLATKLESVQKTASAVATVDVLCSFADVA-----------LRNQYVKPD 585
Query: 782 VRQDNGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
+ D + IK HP L + VPNDI + +D R ++TGPNM GKST
Sbjct: 586 IAIDGA---IDIKAGRHPVVELMLTEEMFVPNDIYIDNKAD----RMSIITGPNMSGKST 638
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R T L V++AQ+G FVP + +S+ D IFTR+GA+D + G+STF+VE +E + +L+
Sbjct: 639 YMRQTALIVLMAQIGSFVPADSAKISVVDKIFTRVGASDDLTAGQSTFMVEMSEVSDILK 698
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHP 958
AT DSLVILDE+GRGTSTFDG +IA AV +V +++ C+ LFATHYH L
Sbjct: 699 NATPDSLVILDEVGRGTSTFDGVSIARAVAEHIVNSKKLGCKTLFATHYHEL-------- 750
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ L++ K+ S +K + FL ++ G ESYG+ VA +AG+P KVV A
Sbjct: 751 -IGLENELEGVKNYSIAVNKHGGNIRFLRKIVRGGVDESYGIDVAKLAGLPAKVVSRARE 809
Query: 1019 AALAMKKS-IGESFKSSEQRSEFS 1041
M+ + E +E+R + S
Sbjct: 810 LLAEMEAAHASEKPVVAEERQQLS 833
Score = 96.3 bits (238), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 108/418 (25%), Positives = 180/418 (43%), Gaps = 65/418 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQ 325
K+S +QY +K +Y D +LFF++G FYE++ DA K L+ +T G +
Sbjct: 7 KISPMMRQYLEMKDKYEDCVLFFRLGDFYEMFFDDAVRVSKALELTLTGRDCGLEERAPM 66
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ D +++L+ G+KV EQL ++K ++ R ++ VVTP T D +
Sbjct: 67 CGVPYHAADMYIKRLIDLGFKVAVCEQLTDPAESKG-----IVIRDVIRVVTPGTLTDSS 121
Query: 386 IGPDAV--HLLAI----KEGNCGPDNGSVVYGFAFVDCAALR-VWVGTINDDASCAALGA 438
+ D ++ +I + +C + + G A + + + G IN+ + C
Sbjct: 122 MLDDGRNNYICSIYYDEENKSCAVASADISTGEAALSTFEGKDMEAGVINELSRC----- 176
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALE-----LTPAMAVTDFLDASEVKKL 493
P EVI+ + L + K A P+ T + VK +
Sbjct: 177 -----RPAEVIFTDSFLSLKNVADFIKIRLECAVTLRDKECFMPSERRTAVMQVFGVKSM 231
Query: 494 VQLN------------GYFNGSSSPWSKALENVMQHDI-GFSALGGLISHLSR-LMLDDV 539
+L G F+ + + + +I G A GL + R L L +
Sbjct: 232 AELGITDDGADCCAVCGLFDYINDTQKTTVSRFTKIEILGGDAFMGLDLNARRNLELTET 291
Query: 540 LRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
LRN + G L+ LDS TS G+RLL++WI PLK I RLD V+
Sbjct: 292 LRNKE------------KKGSLLWVLDSTKTSMGRRLLKNWIEQPLKSPARIIERLDAVD 339
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQ--------ASSCIVLPLIGKKVLK 648
L KNS + + L ++ DLERL+ +V + +++ + LPLI +++ K
Sbjct: 340 ALYKNSVTLADLGDLLDRVYDLERLMTKVMYKSANPRDLKSLSATALQLPLIKQELSK 397
>gi|404482176|ref|ZP_11017403.1| DNA mismatch repair protein MutS [Clostridiales bacterium OBRC5-5]
gi|404344337|gb|EJZ70694.1| DNA mismatch repair protein MutS [Clostridiales bacterium OBRC5-5]
Length = 882
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 206/385 (53%), Gaps = 62/385 (16%)
Query: 728 SILIELFIEKASQWSEVIH-------AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
S+ E+F+E + ++ ++ A++ ID L S A A + N
Sbjct: 525 SLEYEVFVEIRDEIAKNVNRIQSSAKAVAYIDALCSLATVA--------------YNNNY 570
Query: 781 AVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
+ N V+ I+ HP N + ND L ++ R ++TGPNM GKS
Sbjct: 571 VKPEINTTGVIDIRDGRHPVVETMLNDDSFIANDTYLDQNK----KRMSIITGPNMAGKS 626
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T +R T L ++AQ+G FVP + L + D IFTR+GA+D + +G+STF+VE TE A++L
Sbjct: 627 TYMRQTALICMMAQIGSFVPAKQANLCVCDRIFTRVGASDDLASGQSTFMVEMTEVANIL 686
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASH 957
+ AT++SLVILDE+GRGTSTFDG AIA+AV + ++ I + LFATHYH L++ +
Sbjct: 687 RNATRNSLVILDEIGRGTSTFDGLAIAWAVVEHISNIKLIGAKTLFATHYHELSELEGTL 746
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV----- 1012
P V + + K N +N +VFL ++ +G +SYG+QVA +AGVP V
Sbjct: 747 PGV--NNYCISVKENGDN-------IVFLRKIITGGADKSYGIQVAKLAGVPDSVTNRAK 797
Query: 1013 --VEAASHAALAMK-KSIGESF----------KSSE----QRSEFSSLHEEWLKTIVNVS 1055
+E S A +A + + I E+ K SE Q S F +++ + + I +S
Sbjct: 798 ELIEELSSADIATRAREIAEATPAVSKRKPVKKMSEVEAGQLSLFDAINNDTI--IKEIS 855
Query: 1056 RVDCNS-DDDDAYDTLFCLWHELKN 1079
+D S DA +TL+ L +++KN
Sbjct: 856 EIDITSMTPMDALNTLYALQNKIKN 880
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 159/390 (40%), Gaps = 66/390 (16%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
+S +Y K +Y D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 3 LSPMMSKYLETKKEYPDCILFYRLGDFYEMFFEDATEVARELELTLTGKDCGLEERAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGT 385
G+ + + +LV G+KV EQ+E + AK ++ R++V +VTP T T G
Sbjct: 63 GVPYHAAETYINRLVQNGHKVAIAEQMEDPKLAKG-----LVKREVVRIVTPGTITSTGV 117
Query: 386 IGPDA----VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ D + + I E +G A D + +V + S L +
Sbjct: 118 LADDKNNYIISIFYIDER----------FGLAICDISTGDFFVTEL---VSIRELFDEIQ 164
Query: 442 QVSPKEVI----YENRGLCKEAQKALRKFSAGSAALELT--------------------P 477
+ P E+I +E G+ E K +K++ +L+ T
Sbjct: 165 KYQPTEIICNHAFEISGISLEELK--KKYNITITSLDNTYFSEKNSLDILKRHFAVSSIE 222
Query: 478 AMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD 537
A+ +++F DA+ + L + S ++ +G SA M+
Sbjct: 223 ALGLSEFSDAT-ISSGAMLRYLYEMQKSSCAQI--------VGISAYKN-----GDYMIV 268
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
D ++ + R+ + LD T+ G R+LR ++ PL + E I NR + V
Sbjct: 269 DTSSRRNLELVETMREKKKNGSLLGVLDKTNTAMGARMLRGFLEQPLVNKERIINRQEAV 328
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
L + +YL + DLERL+ RV
Sbjct: 329 AELFDRYIDREELREYLNPIYDLERLMSRV 358
>gi|260654148|ref|ZP_05859638.1| DNA mismatch repair protein MutS [Jonquetella anthropi E3_33 E1]
gi|260631133|gb|EEX49327.1| DNA mismatch repair protein MutS [Jonquetella anthropi E3_33 E1]
Length = 841
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/328 (37%), Positives = 173/328 (52%), Gaps = 38/328 (11%)
Query: 700 LTQFEAAIDSDFPDYQNH------DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
L E I + +Y++ + D++ L + ++ + + A++ +DV
Sbjct: 475 LVNGERFITPELKEYEDRRLSAESHIKDIENRIFDELCQAVMDATAALQQTGQALARLDV 534
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPN 812
L SFA AS+ G RP+ P L+I+ HP G+P VPN
Sbjct: 535 LASFADVASV--GQYCRPVFSPDR-------------LEIRAGRHPVVEASLRGVPYVPN 579
Query: 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
D+ + D R L+TGPNM GKST LRA + I+AQ+G FVP E L L D +F
Sbjct: 580 DLTM-----DRTRRVGLVTGPNMAGKSTYLRAAAIIQIMAQMGAFVPAEKASLPLVDRLF 634
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
TR+GA D + G STF+VE ETA++L AT DSLVILDE+GRGTST+DG +IA+A
Sbjct: 635 TRIGARDELSRGNSTFMVEMIETAAILNNATSDSLVILDEVGRGTSTYDGMSIAWAALEY 694
Query: 933 LVERINCR--LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
L + R +LFATHYH LT+ L+ + S S+ D E+ FL+ +
Sbjct: 695 LHGQGGFRPWVLFATHYHELTR---------LEETLDGLFNLSMAVSEADGEVRFLHHVQ 745
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASH 1018
G SYG++VA +AG+P+ VV AS
Sbjct: 746 EGPADRSYGVEVARLAGLPRVVVRRASE 773
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 151/350 (43%), Gaps = 57/350 (16%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL-SGVGKCRQVGI 328
M+ +QY K++Y D LL F++G FYE + DA +ELD +T G K G+
Sbjct: 1 MTPMMRQYLEWKNKYPDCLLLFRMGDFYETFFDDARTVSRELDLTLTARDGDKKLPMAGV 60
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV--DGTI 386
+D + +L+ +GY+V EQ+ + +++ R+++ VVTP T + D ++
Sbjct: 61 PYHAVDGYLARLIEKGYRVAICEQMSEPD------GRTLVDREVIRVVTPGTWLPEDASL 114
Query: 387 GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPK 446
+L KE + AF+ ++ V V D + L+ +P+
Sbjct: 115 NASLAAVLPGKE----------TWAAAFLAPSSPHVRVALAGPD----EILGLITGEAPR 160
Query: 447 EVIYENRGLCKEAQKALRKFSAGSAAL---ELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503
E++ ALR S L E +P + +++ L N
Sbjct: 161 ELLVP----ASSCPPALRGGSWSVLELPKSEFSPTSGQSRLAARWDLRDLAPFGLPENDP 216
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHL---------SRLMLDDVLR-NGDILPYKVYRD 553
+ A + M+ + FS ISHL S L LD + N ++L
Sbjct: 217 RIGAAAAAVSYME-ETSFSK----ISHLQGIVCLTSESYLHLDQSAQMNLELL------- 264
Query: 554 CLRMDGQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
G +L +L+ C T++G+RLL+ WI PL+D +N RLD VE L+
Sbjct: 265 ---NGGASLFAFLNRCRTTAGRRLLQDWIVRPLRDERAVNRRLDAVEALL 311
>gi|345304732|ref|XP_001512218.2| PREDICTED: DNA mismatch repair protein Msh3 [Ornithorhynchus
anatinus]
Length = 1057
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 170/319 (53%), Gaps = 27/319 (8%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D + E L+ L + F E + +H ++ +D + S A A G RP +
Sbjct: 726 VLDCNTEWLNFL-DHFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV----- 777
Query: 779 NPAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
+D G ++ IK HP L + VPN L DS+ R +++TGPNMG
Sbjct: 778 -----EDEGRKIV-IKNGRHPVIDVLLKEQDQYVPNSTHLSGDSE----RVMIITGPNMG 827
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKS+ ++ L ++AQ+G +VP E + + D +FTR+GA D I G STF+ E T+TA
Sbjct: 828 GKSSYIKQVALITLMAQIGSYVPAEEASIGIVDGVFTRMGAADNIYKGRSTFMEELTDTA 887
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
++QKAT SLVILDELGRGTST DG AIAYA ++ + LF THY P+ + S
Sbjct: 888 EIIQKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIKAVTSLTLFVTHYPPVCELEKS 947
Query: 957 HPH-VTLQHMACAFKSNSENYSKGDQE------LVFLYRLTSGACPESYGLQVAVMAGVP 1009
+P V HM S G ++ + FLY+LT G SYGL VA +A VP
Sbjct: 948 YPQEVGNYHMGFLVNEEECEQSPGSEDEQTPEFVTFLYQLTRGVAARSYGLNVAKLADVP 1007
Query: 1010 QKVVEAASHAALAMKKSIG 1028
++++ A+H + +++ +
Sbjct: 1008 GEILKKAAHKSKELEELVN 1026
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 107/430 (24%), Positives = 176/430 (40%), Gaps = 81/430 (18%)
Query: 251 DDPLYDKRT--LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGH 308
D L +KRT +Y P E Q+ +K Q+ D +L + G Y + DAEI
Sbjct: 143 DLKLTNKRTKSIYTPLEL---------QFMEMKQQHKDAILCVECGYKYRFFGEDAEIAA 193
Query: 309 KELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSV 367
+EL+ L I + V +LVA G+KVG ++Q ET+ +A + +S+
Sbjct: 194 RELNIYCHLD--HNFMTASIPTHRLFVHVRRLVANGHKVGVVKQTETAALKAIGENKSSL 251
Query: 368 ISRKLVNVVTPSTTVDGTIGP----DAV------------HLLAIKEG----NCGPDNGS 407
+RKL + T ST + + P D V +LL I E N G+
Sbjct: 252 FTRKLTALYTKSTLIGEDVNPLTLDDTVDVEDTAIDTSSNYLLCICENQNQENVKDKKGA 311
Query: 408 VVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS 467
+ G V A V + D S + L ++++ P E++ + L +++K + + +
Sbjct: 312 IFIGIVGVQPATGEVVFDSFQDSGSRSELETRILRMQPVELLLPSH-LSDQSEKCINRIT 370
Query: 468 A-------------GSAALELTPAMAV-TDF-------------------LDASEVKKLV 494
+ S E + A + T+F LD + L
Sbjct: 371 SICVRDDRIRVERMDSLHFEYSQAFQLMTEFYSKDVLGIQGPPSFSGILDLDKPVICSLA 430
Query: 495 QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
+ Y + LE + + F L + +++ + L+N +IL +
Sbjct: 431 AVIKYLKEFN------LEKTLYNTRNFKQLSSEMEYMT--INGTTLKNLEILQNQTD--- 479
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQ 612
L+ G L+ LD T G+R L+ W+ PL IN RLD V E L+ S + +
Sbjct: 480 LKTKGSLLWVLDHTKTPFGRRRLKKWVTQPLLKSREINARLDAVSEVLLYESSMFGQLQN 539
Query: 613 YLRKLPDLER 622
+L +LPDLER
Sbjct: 540 HLCRLPDLER 549
>gi|209363939|ref|YP_001424366.2| DNA mismatch repair protein MutS [Coxiella burnetii Dugway 5J108-111]
gi|207081872|gb|ABS76827.2| DNA mismatch repair protein [Coxiella burnetii Dugway 5J108-111]
Length = 871
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 166/311 (53%), Gaps = 28/311 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ IEK + AI+ +DVL + A A + N Q P
Sbjct: 551 LLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNAPQFCDYP 596
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++KI+ HP +PND L E R L++TGPNMGGKST +R T L
Sbjct: 597 IIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYMRQTALIT 651
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L AT++SLV+
Sbjct: 652 LLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVL 711
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++AYA L ++ LFATHY LT ++ P V H+
Sbjct: 712 MDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAV- 770
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ +++++FL+ L G +SYGLQVA +AG+P+ V++ A ++ +
Sbjct: 771 --------EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEELENPVIS 822
Query: 1030 SFKSSEQRSEF 1040
+ +Q F
Sbjct: 823 ETQQPQQNELF 833
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 34 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 93
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 94 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 148
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 149 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 197
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 198 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 248
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 249 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 299
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 300 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 358
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 359 ENLRHIGDLERIVARIALR 377
>gi|345017667|ref|YP_004820020.1| DNA mismatch repair protein mutS [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033010|gb|AEM78736.1| DNA mismatch repair protein mutS [Thermoanaerobacter wiegelii Rt8.B1]
Length = 867
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ D ++ +G HP +
Sbjct: 552 IAIIDVLISFAEVAE--TNRYIKPIV-----------DYSDRIVITEG-RHPVIETISDE 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 598 SFVANDIDIGSENP-----IMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGI 652
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L+ AT SL+ILDE+GRGTST+DG +IA+
Sbjct: 653 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTSTYDGMSIAH 712
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL
Sbjct: 713 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHA--ALAMKKSIGESFKSSEQRSEFSSL 1043
++ G +SYG+QV+ +AG+P +VE A +L K I +++ Q+ F+ +
Sbjct: 764 KIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLENDKVIKSELENASQQLAFTQI 821
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 174/379 (45%), Gaps = 54/379 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T VG + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDVGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KL+ +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKG-----LVKRDVVRIYTPGT----IINPESM 118
Query: 392 ------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+L+++ +G DN YG VD ++ + + + + + +P
Sbjct: 119 DEKTNNYLVSVFKGR---DN----YGICAVDVTTGDLYATELKNCKDTKRVYDEITKYAP 171
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E+I N K K ++ F + A+ + LD E KL++ FN S
Sbjct: 172 SEII-ANEDFLKN-NKYVKIFKNNNCAINIYEKQ-----LDYEEKIKLIETQ--FNKKSE 222
Query: 506 PWSKALENVMQHDIG--FSALGGL----ISHLSRLML----------DDVLRNGDILPYK 549
+ M + + FS L L + H+++L++ + ++N +IL
Sbjct: 223 ELGIKDKPYMANSLAALFSYLQELQKTALKHINKLLIYEDNSYMGLDSNAIKNLEILESN 282
Query: 550 VYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+ G L LD VT G RLL+ W+ PL + E I+ RL VE L + +
Sbjct: 283 KNKS---KKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEELFNDYKNRQ 339
Query: 609 VVAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL ++
Sbjct: 340 DLKQLLNKIYDLERLASKI 358
>gi|351695603|gb|EHA98521.1| DNA mismatch repair protein Msh2 [Heterocephalus glaber]
Length = 934
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 161/285 (56%), Gaps = 25/285 (8%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +D + SFA ++ + RP+IL + G + +K H ++
Sbjct: 599 LAQLDAVVSFAHVSNGAPVPYVRPVIL----------EKGQGRIILKASRHACVEVQDEI 648
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+PND+ +D ++TGPNMGGKST +R T + V++AQ+GCFVPCE +S+
Sbjct: 649 AFIPNDVHFEKDKQ----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSI 704
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D I R+GA D + G STF+ E ETAS+L+ AT+DSL+I+DELGRGTST+DG+ +A+
Sbjct: 705 VDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAW 764
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ + RI +FATH+H LT P V H+ D+ L LY
Sbjct: 765 AISDYIATRIGAFCMFATHFHELTALANQIPTVNNLHVTAL---------TTDETLTMLY 815
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGES 1030
++ G C +S+G+ VA +A P+ V+E+A AL ++ +SIG S
Sbjct: 816 QVKKGVCDQSFGIHVAELANFPRHVIESARQKALELEEFQSIGAS 860
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 136/344 (39%), Gaps = 62/344 (18%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY---ENRGLCKEAQK 461
+G G +VD ++ + D+ + L ALL+Q+ PKE + E G + ++
Sbjct: 156 DGQRQLGVGYVDSTQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETFGDMGKMRQ 215
Query: 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSS-SPWSKALENVMQHDI 519
+++ AG E A DF K + Q LN G + + M++ +
Sbjct: 216 IIQR--AGILITERKRA----DF----STKDIYQDLNRLLKGKKGEQMNSVVLPEMENQV 265
Query: 520 GFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD-------------------GQ 560
S+L +I L L D ++ + + +++D Q
Sbjct: 266 AVSSLSAVIKFLELLSDDSNFGQFELTTFD-FSQYMKLDIAAVKALNLFQGSVEDTTGSQ 324
Query: 561 TL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKL 617
+L L+ C T G+RL+ WI PL D I RL++VE +++ E+ + + LR+
Sbjct: 325 SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDVELRQNLQEDLLRRF 384
Query: 618 PDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFG--SLVKGLRIAMDLLMLMHK-E 674
PDL RL KK +Q + L +G+ +++ + K E
Sbjct: 385 PDLNRL-------------------AKKFQRQAANLQDCYRLYQGINQLPNVIQALEKYE 425
Query: 675 GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
G L +F P+ D KF E +D D +NH+
Sbjct: 426 GRHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMD--QVENHE 467
>gi|304438411|ref|ZP_07398351.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368494|gb|EFM22179.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 860
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 187/341 (54%), Gaps = 43/341 (12%)
Query: 697 DKFLTQ----FEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCID 752
++F+T+ FEA I +T L+ + L E E+ V AI+ +D
Sbjct: 498 ERFITEELKDFEAKILG-----AEEKITALEYHLFTELRERVREQLVPIQGVARAIARVD 552
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLP 809
VL+S A A+ + P V D G ++I+ HP L + +
Sbjct: 553 VLQSLAAAAASY-----------RYVRPTVGADGG---IRIRDGRHPLVERILQRD--VF 596
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPND L + T+L+TGPNM GKST +R L ++AQ+G FVP ++ D
Sbjct: 597 VPNDTELSHGGTE----TMLITGPNMAGKSTYMRQVALLTLMAQVGSFVPARTAEIAPVD 652
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+GA+D +++G+STF+VE E A +L++AT+DSLVILDE+GRGTSTFDG +IA AV
Sbjct: 653 RIFTRIGASDDLVSGQSTFMVEMNEVAQILREATRDSLVILDEIGRGTSTFDGMSIARAV 712
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+ RI+ + LFATHYH LT+ + +++ A + +N +VFL R+
Sbjct: 713 VEHIDGRIHAKTLFATHYHELTE----MENERIRNYCIAVREKGKN-------VVFLRRI 761
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGES 1030
+GA +SYG+ VA +AG+PQ+V E A A++ + +S
Sbjct: 762 VAGAADKSYGIHVARLAGLPQRVTERAEEILHALEAAAPQS 802
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 164/382 (42%), Gaps = 45/382 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSG-VGKCRQVGISESG 332
+QY K + LLFF++G FYE++ DA++ KEL +T SG + K G+
Sbjct: 11 QQYLAAKEAHPGELLFFRLGDFYEMFFDDAKVAAKELGLTLTSRSGDLEKNPMCGVPYHA 70
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDA-- 390
D + +LVA+G+KV EQ+ + H R++V VVTP T + DA
Sbjct: 71 ADSYIARLVAKGFKVAIAEQIGDPKAKGLTH------REVVKVVTPGTALSDEALRDASN 124
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDC--AALRVWVGTINDDASCAALGALLMQVSPKEV 448
++++ + E P G V A + A V+ G + A+ + L +++ + +
Sbjct: 125 IYIVLLHE----PAPGQFVLAGADITTGEAFYAVYAG---EHAAQQIMDELYRRMAAELL 177
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS 508
+ E L E +R F A P AV+ ++ Q +F P
Sbjct: 178 LTEGFSLADE----VRAFLAHR-----LPHCAVSVVSREADAALPAQ---HFPAEEIPCD 225
Query: 509 KALENVMQHDIGF--SALGGLISHLSRLMLDD----------VLRNGDILPYKVYRDCLR 556
+ + + + +S ++RL D LRN +I + RD +
Sbjct: 226 AGARAALAALLTYLHETVMADLSQINRLAFLDAAETMQLDTYTLRNLEIT--RSLRDGGK 283
Query: 557 MDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
+ LD T G RLL++W+ HPL I+ RLD V L++ S + + L
Sbjct: 284 KNTLFDVLDFTRTPMGTRLLKAWLEHPLLTPHRIDARLDAVAELVEKSTLRDALRDALHT 343
Query: 617 LPDLERLLGRVKARVQASSCIV 638
+ D ERLL R++ + + +V
Sbjct: 344 VYDFERLLTRIETQTANARDLV 365
>gi|300113486|ref|YP_003760061.1| DNA mismatch repair protein MutS [Nitrosococcus watsonii C-113]
gi|299539423|gb|ADJ27740.1| DNA mismatch repair protein MutS [Nitrosococcus watsonii C-113]
Length = 863
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNG-G 788
L+E F+E +A++ +DVL + A A + PL+ S P + + G
Sbjct: 537 LLEQFMEPLPALRACANALAELDVLHNLAERAKTLEYVV--PLL---SDQPGILIEEGRH 591
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
PV++ + L +PF VPND+ L E R L++TGPNMGGKST +R T L
Sbjct: 592 PVVE-QTLENPF---------VPNDLTLQETR-----RMLIITGPNMGGKSTYMRQTALI 636
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LA +G FVP V+ D IFTR+GA D + G STF+VE TETA++L ATQ SLV
Sbjct: 637 VLLAHIGSFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATQYSLV 696
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
+LDE+GRGTSTFDG ++A+AV LV LFATHY LT H L +A
Sbjct: 697 LLDEVGRGTSTFDGLSLAWAVASYLVNNARSLTLFATHYFELTA-LPEH----LDGVANL 751
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ +E+ + +VFL+ + G +SYGLQVA +AGVPQ+V+ A + ++ +
Sbjct: 752 HLTATEHKER----IVFLHAVKEGPASQSYGLQVAALAGVPQEVIAQARQRLMKLESN 805
Score = 60.1 bits (144), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
K + +QY +K++Y LL +++G FYEL+ DA+ + LD +T G +
Sbjct: 8 KPHTPMMQQYLRIKAEYPATLLLYRMGDFYELFYDDAQRAAELLDITLTSRGQSAGEPIP 67
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVD 383
GI +D + +LV +G V EQ+ +K + R++ ++TP T T +
Sbjct: 68 MAGIPYHALDSYLARLVRQGESVAICEQVGDPATSKG-----PVERQVARIITPGTVTEE 122
Query: 384 GTIGPDAVHLLAI--KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ +LLA +EG+ V+GFA +D + R I + AS +A + L
Sbjct: 123 ALLEARRDNLLAALQREGD--------VFGFAVLDLCSGRF---NILEVASESATISELA 171
Query: 442 QVSPKEVI 449
++ P E++
Sbjct: 172 RIRPAELL 179
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLLR ++ PL+D + R + L++ + ++ + LR + D+ER+
Sbjct: 297 LDRTATAMGSRLLRRYLHRPLRDQTLLKQRQQALAALLEGG-LTDILQKLLRGIGDIERI 355
Query: 624 LGRVKAR 630
L RV R
Sbjct: 356 LSRVALR 362
>gi|198420769|ref|XP_002126892.1| PREDICTED: similar to DNA mismatch repair protein MSH2 [Ciona
intestinalis]
Length = 944
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 158/277 (57%), Gaps = 16/277 (5%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ +DVL SFA A + RP++ P G ++K+ HP ++
Sbjct: 606 IAKLDVLLSFAQAAVTAPTPYVRPVLQPLG--------TGSNLIKLDQCRHPCVERQDDV 657
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+PND+LL ++ + + ++TGPNMGGKST +R +AV++AQ+GCFVPC ++L
Sbjct: 658 SFIPNDLLLKKNEHNFI----IVTGPNMGGKSTYIRQIGVAVLMAQIGCFVPCGGATVTL 713
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D I R+GA D G STF+ E ET+S+L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 714 VDAILARVGAGDCQAQGVSTFMAEMLETSSILRSATSNSLIIIDELGRGTSTYDGFGLAW 773
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ R + I LFATH+H +T A + + A S++EN D + LY
Sbjct: 774 AISRHVALEIRAACLFATHFHEMTS-LADEVTSAVNYHVTALTSSNENV---DSHITMLY 829
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
++ G+C +S+G+ VA P V+ AA A ++
Sbjct: 830 QVKPGSCDKSFGIHVAECVDFPLSVINAAKRKAAELE 866
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 107/258 (41%), Gaps = 30/258 (11%)
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
G G A+VD + V +D+ + L + ++Q+ PKE I EA K
Sbjct: 152 GQSTVGLAYVDTRSCEVMYAEFSDNDHFSNLESAIIQLGPKECIVPKLDTSHEASKLSEV 211
Query: 466 FSAGSAALELTPAMAVTDFLDASEVKKLVQLN-----------GYFNGSSSPWS------ 508
+ P + A ++K+L++ G S P +
Sbjct: 212 IKRSGLLITERPKSDFSTKDLAQDLKRLIKTKKKQSDQDEVPVGASWTSDHPLASSSLSS 271
Query: 509 --KALENVMQHDIGFSALGGLISHLSRLM-LDDVLRNG-DILPYK----VYRDCLRMDGQ 560
+ LE +M + F LS+ M LD + ++ P + V ++ +D
Sbjct: 272 LIRYLE-LMSKEENFGEFRIRKFELSQYMKLDSAAYSALNLFPERTAQGVAQNSKPVDSL 330
Query: 561 TLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM-VVAQYLRKLPD 619
L+ C T G+RLL WI PL DV + RL +VE + SE+ +V ++L+KLPD
Sbjct: 331 YGLLNYCQTVQGQRLLSRWIKQPLIDVNILEERLSIVEAFVDCSELRRSLVDEHLKKLPD 390
Query: 620 LERL---LGRVKARVQAS 634
+RL R KA +Q S
Sbjct: 391 FDRLSKKFHRKKATLQDS 408
>gi|116513155|ref|YP_812062.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
SK11]
gi|123320077|sp|Q02VS3.1|MUTS_LACLS RecName: Full=DNA mismatch repair protein MutS
gi|116108809|gb|ABJ73949.1| DNA mismatch repair protein MutS [Lactococcus lactis subsp. cremoris
SK11]
Length = 840
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 28/270 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TEGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP + L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAKTANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKAT SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + E I + LFATHYH LT H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHEYIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++T G +SYG+ VA +AG+PQ ++E A
Sbjct: 747 HKITDGPADKSYGIHVAKIAGLPQTLLERA 776
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 74/386 (19%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAATEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D + Y +++D + V +++ A +G +
Sbjct: 116 DTANSVDNNFLVAI-------DFKAKRYALSYMDLSTGEFKVTELSE--FSAVVGG-IAS 165
Query: 443 VSPKEVIYENRGL-CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ +E++ G EAQ + E + +++ + E L++L+G
Sbjct: 166 LKAREIVV---GFPLDEAQVKV---------FERQMNLLISEQFEIPE-NLLIELSGL-- 210
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ- 560
ALEN A L++++ + D+ ++ Y++ +D L++D
Sbjct: 211 -------TALEN--------QAASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQLDFAT 254
Query: 561 -----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 255 KSSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFL 314
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 315 DHFFERSDLIEALKGVYDLERLASRV 340
>gi|336113900|ref|YP_004568667.1| DNA mismatch repair protein MutS [Bacillus coagulans 2-6]
gi|335367330|gb|AEH53281.1| DNA mismatch repair protein MutS [Bacillus coagulans 2-6]
Length = 858
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 172/323 (53%), Gaps = 38/323 (11%)
Query: 712 PDYQNHDVTDLDAE--TLSILIELFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L AE + + ELF E + E I A+S IDVL+SFAV +
Sbjct: 490 PELKEKEALILQAEERMIDLEYELFTEIRAHVKEFIPRLQRLAKAVSTIDVLQSFAVVSE 549
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSD 821
P R D VLKI HP + VPND L+ E+ +
Sbjct: 550 KR-----------HYTKPVFRTDG---VLKITEGRHPVVEKVLDSQSYVPNDCLMDENRE 595
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VILAQ+GCFVP L + D IFTR+GA D +
Sbjct: 596 -----ILLITGPNMSGKSTYMRQIALTVILAQIGCFVPAREAELPVFDRIFTRIGAADDL 650
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + + AT+ SL++ DE+GRGTST+DG A+A A+ + + I +
Sbjct: 651 ISGQSTFMVEMLEAKNAIANATERSLILFDEIGRGTSTYDGMALAQAMIEYIHDEIGAKT 710
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT A + H+ A + N ++VFL+++ G +SYG+
Sbjct: 711 LFSTHYHELTALSADLGKLQNVHV-TAMEQNG--------KVVFLHKIKEGPADKSYGIH 761
Query: 1002 VAVMAGVPQKVVEAASHAALAMK 1024
VA +AG+P++V+ A A++
Sbjct: 762 VAKLAGLPEQVIRRAEKILHALE 784
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 159/373 (42%), Gaps = 55/373 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY VK++Y D LFF++G FYE++ DA +EL+ +T G K G+
Sbjct: 3 QQYLQVKAEYQDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGDEKIPMCGVPYH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG-TIGPDA 390
+E+L+ +GYKV EQ+E + AK V+ R+++ ++TP T ++G ++
Sbjct: 63 SASTYIEQLIDKGYKVAICEQMEDPKLAKG-----VVKREVIQLITPGTLMEGKSLAEKE 117
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVD--------CAALRVWVGTINDDASCAALGALLMQ 442
H +A P +G + A++D C + +N+ AS A A++
Sbjct: 118 NHYIA---SVASPADGH--FAIAYIDLSTGEGKGCLLEGPFEEVLNELASIGAKEAVVDP 172
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
P E L K + G+ + AV + + K L QL
Sbjct: 173 EFPDEYAR----LMK---------NTGNITISFETDTAVKEGFE----KLLPQLK----- 210
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR----DCLRMD 558
P L + F + HL + + +V R +I Y + +R
Sbjct: 211 ---PELLQLAAARLLNYLFRTQKRSLDHLQPVEMYEVRRFLNIDYYSKRNLELTETIRGQ 267
Query: 559 GQT----LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
G+ LD +T+ G RLL+ WI PL E I RL +VE + + + L
Sbjct: 268 GKKGSLLWLLDETMTAMGGRLLKQWIGRPLLKQEKIEARLQMVETFLNHYFEREDIRGRL 327
Query: 615 RKLPDLERLLGRV 627
+++ DLERL GRV
Sbjct: 328 KEVYDLERLAGRV 340
>gi|344245098|gb|EGW01202.1| DNA mismatch repair protein Msh2 [Cricetulus griseus]
Length = 852
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 161/285 (56%), Gaps = 25/285 (8%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +D + SFA ++ + RP+IL + K V +K H ++
Sbjct: 517 LAQLDAVVSFAHVSNAAPVPYVRPVILEKGKGRIV----------LKASRHACVEIQDEV 566
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+PND+ +D ++TGPNMGGKST +R T + V++AQ+GCFVPCE +S+
Sbjct: 567 AFIPNDVCFEKDKQ----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSI 622
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D I R+GA D + G STF+ E ETA++L+ AT+DSL+I+DELGRGTST+DG+ +A+
Sbjct: 623 LDCILARVGAGDSQLKGVSTFMAEMLETAAILRSATKDSLIIIDELGRGTSTYDGFGLAW 682
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ + +I +FATH+H LT + P V H+ ++ L LY
Sbjct: 683 AISEYIATKIGAFCMFATHFHELTALASQIPTVNNLHVTAL---------TSEETLTMLY 733
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGES 1030
++ G C +S+G+ VA +A P+ VVE A AL ++ +SIG S
Sbjct: 734 QVKKGVCDQSFGIHVAELANFPRHVVECARQKALELEEFQSIGTS 778
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 133/332 (40%), Gaps = 50/332 (15%)
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G +VD ++ + D+ + L ALL+Q+ PKE + + K + G
Sbjct: 80 GVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIQRGG 139
Query: 471 AALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSS-SPWSKALENVMQHDIGFSALGGLI 528
L DF K + Q LN G + A+ M++ + S+L +I
Sbjct: 140 I---LITERKRADF----STKDICQDLNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVI 192
Query: 529 SHLSRLMLDDVLRNGDILPYKVYRDCLRMD-------------------GQTL--YLDSC 567
L L D ++ + +R +R+D Q+L L+ C
Sbjct: 193 KFLELLSDDSNFGQFELTTFD-FRQYMRLDMAAVRALNLFQGSVEDTTGSQSLAALLNKC 251
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGR 626
T+ G+RL+ WI PL D I RL++VE +++SE+ + + LR+ PDL RL +
Sbjct: 252 KTAQGQRLVNQWIKQPLMDKNRIEERLNLVETFVEDSELRQTLQEDLLRRFPDLNRLAKK 311
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFK 686
+ QA++ L L Q V S+++ L+ +G L +F
Sbjct: 312 FQR--QAAN-----LQDCYRLYQGVNQLPSVIQALK---------KYQGRHQALLMAVFV 355
Query: 687 PPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
P+ D KF E +D D +NH+
Sbjct: 356 TPLIDLRSDFSKFQEMIETTLDMD--QVENHE 385
>gi|429766908|ref|ZP_19299148.1| MutS domain V protein [Clostridium celatum DSM 1785]
gi|429182791|gb|EKY23874.1| MutS domain V protein [Clostridium celatum DSM 1785]
Length = 475
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 169/301 (56%), Gaps = 27/301 (8%)
Query: 722 LDAETLSILIE--LFIE-KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
L AE I +E LF+E + S++ + +++ S +++ AM I P
Sbjct: 80 LGAEEQLIALEYKLFVELRDKVESQIPRLKNSANIISSLDAITTLAKVAMENDYIRPNIN 139
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGG 837
N + + IK HP N G V ND + + + R LL+TGPNM G
Sbjct: 140 NEGI--------IDIKNGRHPVVEKVINNGEFVSNDTYINKKEN----RFLLITGPNMAG 187
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KST +R L ++AQ+G FVP +S+ D IFTR+GA+D + G+STF+VE E ++
Sbjct: 188 KSTYMRQVALITLMAQIGSFVPASYANISVCDKIFTRIGASDDLAGGKSTFMVEMWEVSN 247
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFA 955
+L+ AT DSLV+LDE+GRGTST+DG +IA++V + E + C LFATHYH LTK
Sbjct: 248 ILKNATSDSLVLLDEVGRGTSTYDGLSIAWSVIEYISNKEELKCNTLFATHYHELTK--- 304
Query: 956 SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEA 1015
L+ + K+ S + ++++VFL ++ G +SYG++VA +AG+P++V+
Sbjct: 305 ------LEGIIEGVKNYSVAVKETNEQVVFLRKIVEGGADQSYGIEVAKLAGLPKEVINR 358
Query: 1016 A 1016
A
Sbjct: 359 A 359
>gi|361131040|gb|EHL02770.1| putative DNA mismatch repair protein msh-2 [Glarea lozoyensis 74030]
Length = 783
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 165/299 (55%), Gaps = 22/299 (7%)
Query: 726 TLSILIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L+ + A+ + VI I+ +DV+ SFA + + + RP + P+ +
Sbjct: 427 TQSSLVNEVVSVAASYCPVIEFLAGVIAHLDVIVSFAHCSVHAPTSYVRPKMHPRGEGST 486
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
+ +K HP ++ + ND+ L S + L++TGPN GGKST
Sbjct: 487 I----------LKEARHPCMEMQDDIQFITNDVTLERGS----SQFLIITGPNCGGKSTY 532
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R + ++AQ+GCFVPC L++ D I R+GA+D + G STF+ E ETA++L+
Sbjct: 533 IRQIGVIALMAQIGCFVPCSEAELTIFDCILARVGASDSQLKGVSTFMAEMLETANILKS 592
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT +SL+I+DELGRGTST+DG+ +A+A+ +++ I C +FATH+H LT ++P V
Sbjct: 593 ATSESLIIIDELGRGTSTYDGFGLAWAISEHIIKEIGCFSMFATHFHELTALVDTYPQVQ 652
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
H+ N K +E+ LY++ G C +S+G+ VA + P+KVV A A
Sbjct: 653 NLHVVAHIDDN----GKAKREVTLLYKVEDGICDQSFGIHVAELVRFPEKVVNMAKRKA 707
Score = 44.7 bits (104), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T G RL+ W+ PL + I R +VE ++++E+ + ++LR +PDL R
Sbjct: 183 LNHCKTPIGSRLMAQWLKQPLMSKDEIEKRQQLVEAFVEDTELRQTMQEEHLRSIPDLYR 242
Query: 623 LLGRVKARV 631
L R + ++
Sbjct: 243 LAKRFQRKM 251
>gi|297205602|ref|ZP_06922998.1| DNA mismatch repair protein MutS [Lactobacillus jensenii JV-V16]
gi|297150180|gb|EFH30477.1| DNA mismatch repair protein MutS [Lactobacillus jensenii JV-V16]
Length = 860
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 177/327 (54%), Gaps = 38/327 (11%)
Query: 700 LTQFEAAIDSDFPDYQN------HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
LT E I + +++N + TDL+ + S L E + E+ + I+ +D
Sbjct: 485 LTGSERYITPELKEHENLILEAENKSTDLEYQIFSDLREYIKTFIPKLQELGNTIASLDA 544
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPV 810
L SFA A ++ P+ QD+ +K+ HP L + G +
Sbjct: 545 LTSFATVAEENNYC-----------RPSFHQDS--QEIKVVAGRHPVVEKVLAD--GSYI 589
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PNDI + +D+ L+TGPNM GKST +R L ++AQ+G FVP L + D
Sbjct: 590 PNDIQMADDTS-----VFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEAALPIFDQ 644
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
IFTR+GA D +++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+
Sbjct: 645 IFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAIV 704
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+ L +++ + LFATHYH LT + H+ H+ ++ + +L+FL+++
Sbjct: 705 KYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGA---------TQENGKLIFLHKIL 755
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAAS 1017
G +SYG+ VA +AG+P KV+ AS
Sbjct: 756 PGPADQSYGIHVAQLAGLPNKVLREAS 782
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 163/364 (44%), Gaps = 39/364 (10%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
KQY+++KSQY D LF++VG FYEL+E DA G + L+ +T G+
Sbjct: 9 KQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPIPMAGVPHQ 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D V LV +GYKV EQLE +QAK ++ R ++ +VTP T ++ GP+
Sbjct: 69 AVDSYVNTLVEKGYKVALCEQLEDPKQAKG-----MVKRGIIQLVTPGTMMNE--GPNGA 121
Query: 392 ----HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
+L ++ G +G A+ D + ++ + S A + L+ + KE
Sbjct: 122 KESNYLTSVFSTKSG-------FGLAYSDLSTGEIFTTHLK---SFADVLNELLSLRTKE 171
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPW 507
V++E G ++QK + K S +T + + D +EV +Q N +
Sbjct: 172 VVFE--GSLSDSQKDVLKKS------NITVSTPIQDQEKHAEVSYAIQ--KLSNQAEKDA 221
Query: 508 SKALENVM----QHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+K L + + + + L + V++N L + +M
Sbjct: 222 TKQLVIYLLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASA-KTGKKMGSLFWL 280
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLL+ W+ PL + I R +V+ ++ N V L+ + DLERL
Sbjct: 281 LDKTNTAMGGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFTREGVKDALKGVYDLERL 340
Query: 624 LGRV 627
GR+
Sbjct: 341 TGRI 344
>gi|152997735|ref|YP_001342570.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1]
gi|189083158|sp|A6W1Q6.1|MUTS_MARMS RecName: Full=DNA mismatch repair protein MutS
gi|150838659|gb|ABR72635.1| DNA mismatch repair protein MutS [Marinomonas sp. MWYL1]
Length = 883
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 170/308 (55%), Gaps = 41/308 (13%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E L+E E + A++ +DVL +FA A+ S P+ N
Sbjct: 529 EKELYEALLEQLNEILGELQTTSQALAQLDVLNNFAERANALS------FTCPELHN--- 579
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
GG ++I G HP VPND+ L + L++TGPNMGGKST +
Sbjct: 580 ---RGG--IQIVGGRHPVVESVISEPFVPNDLDLNDKRS-----LLMITGPNMGGKSTYM 629
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L +LA GCFVP E +S+ D IFTR+G++D + G STF+VE TETA++L A
Sbjct: 630 RQIALITLLAHTGCFVPAESASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNA 689
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-----EFASH 957
+++SLV++DE+GRGTSTFDG ++A+A L ++ C +LFATHY LT E A++
Sbjct: 690 SKNSLVLMDEVGRGTSTFDGLSLAWAAVDYLANKLKCYVLFATHYFELTTLADQLENAAN 749
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
H+T ++ + E+VFL+++ G +SYGLQVA +AGVP+ V+
Sbjct: 750 VHLT--------------ATEYEDEIVFLHKVHEGPASQSYGLQVAQLAGVPRDVI---G 792
Query: 1018 HAALAMKK 1025
HA +K+
Sbjct: 793 HAKQKLKE 800
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 176/375 (46%), Gaps = 44/375 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY+ +KSQ+ + LLF+++G FYEL+ DA+ + LD ITL+ G + I +GI
Sbjct: 14 RQYFGLKSQHPNQLLFYRMGDFYELFYDDAKRASRLLD--ITLTARGHSGGIPIPMAGIP 71
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAVH 392
A E +AR ++G E + +EQ T+ + R++ +VTP T D +
Sbjct: 72 YHAAENYIARLVRMG--ESVVVAEQTGDPATSKGPVERQIARIVTPGTISDEAFLEEKRE 129
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
L + + G ++GF+++D A+ R + ++ AL + L ++SP+E++
Sbjct: 130 NLLLSLAHQS-RKGLDIFGFSYLDMASGRFCLFEVD---GHEALSSELQRLSPREILISE 185
Query: 453 RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ------LNGYFNGSSSP 506
+ K + S EL P F S ++L+Q L+G+ + +
Sbjct: 186 DFPARATLKLEKGIS------ELGP----WHFDYESSYRQLIQQFSTKDLSGFGCEAMTA 235
Query: 507 WSKALENVMQH--DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD------ 558
+ ++Q+ D SAL H+ +M++ ++ +L R L +D
Sbjct: 236 AIASAGALLQYAKDTQRSAL----PHIQSIMVEH--KDDSVLIDGATRRNLEIDINLTGG 289
Query: 559 -GQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
TL LD C T G RLL+ W+ P++D+ I R VV L +N A L+
Sbjct: 290 TSNTLVEVLDKCSTPMGSRLLKRWLHTPIRDLNEIQARQQVVAELQQNQSYNAFEAP-LK 348
Query: 616 KLPDLERLLGRVKAR 630
K+ DLER+L RV R
Sbjct: 349 KVGDLERILSRVALR 363
>gi|23099086|ref|NP_692552.1| DNA mismatch repair protein MutS [Oceanobacillus iheyensis HTE831]
gi|44888208|sp|Q8CXG6.1|MUTS_OCEIH RecName: Full=DNA mismatch repair protein MutS
gi|22777314|dbj|BAC13587.1| DNA mismatch repair protein (mismatch recognition step)
[Oceanobacillus iheyensis HTE831]
Length = 867
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 163/306 (53%), Gaps = 39/306 (12%)
Query: 722 LDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTASMSSGAMHRPL 772
L+AE S+ +E LFI+ Q E I H IS +DVL+SFA +
Sbjct: 506 LEAEEKSVELEYDLFIQIRDQIKEEIPLIQQLAHIISQMDVLQSFATVSE---------- 555
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSDDCLPRTLLLT 831
N VR D L++ HP G VPND++ + + LL+T
Sbjct: 556 -----SNNYVRPDFNDEQLQVTKGRHPVVEQVMKDGTFVPNDVVFDKSQN-----MLLIT 605
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNM GKST +R L I+ Q+GCF+P E L + D IFTR+GA D +++G+STF+VE
Sbjct: 606 GPNMSGKSTYMRQVALTSIMGQIGCFIPAEQATLCVFDQIFTRIGAADDLVSGQSTFMVE 665
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951
E + AT SL++LDE+GRGTST+DG A+A A+ + I + LF+THYH LT
Sbjct: 666 MLEARHAISNATDRSLILLDEIGRGTSTYDGMALAQAIVEYIHHNIAAKTLFSTHYHELT 725
Query: 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
S H+ H+ + + +VFL+++ GA +SYG+ VA +A +P +
Sbjct: 726 ALEDSLHHLKNIHVRA---------EEHEGNVVFLHQIKEGAADQSYGIHVAKLADLPNE 776
Query: 1012 VVEAAS 1017
++E AS
Sbjct: 777 LIERAS 782
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 161/388 (41%), Gaps = 69/388 (17%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K++ +QY +K++Y D LF+++G FYEL+ DA +EL+ +T GK +
Sbjct: 1 MAKLTPMMEQYIQIKNEYKDAFLFYRLGDFYELFYEDATRAAQELEITLTKRAGGKGDPI 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ ++ L+ RGYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAENYIKTLIDRGYKVAICEQVEDPKTAKG-----VVKREVVQMITPGTVME 115
Query: 384 GTIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
T+ D E N +GS Y + D + + IND A +
Sbjct: 116 STMLTDG-------ENNYIGSLSHFQDGS--YVIVYNDLSTGENRLAFINDGWD-AVIHE 165
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNG 498
Q + VI N L +E Q L++ L ++ D EV
Sbjct: 166 FYNQPIKEIVISSN--LPEELQIQLKE--------RLNVTLSYQD-----EVT------- 203
Query: 499 YFNGSSSPWSKAL--ENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
FN S+ L E +M+ FS L I + L L+ +++ K Y
Sbjct: 204 -FNAEFRELSENLNDERLMK---AFSRLLNYIQTTQKRSLHH-LQKAEVIELKKYMSLDM 258
Query: 557 MDGQTLYLDSCV-----------------TSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+ L L + T+ G R L+ W+ PL + IN RL+VV+
Sbjct: 259 YSKRNLELTETIMKKSKHGSLLWVLDKTVTAMGARTLKKWLERPLLSKQKINERLEVVQG 318
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ L+ + DLERL GR+
Sbjct: 319 FYDGFMERESLRDLLKSVYDLERLSGRI 346
>gi|406037373|ref|ZP_11044737.1| DNA mismatch repair protein MutS [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 890
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 165/301 (54%), Gaps = 37/301 (12%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+ IDVL +FA A +++ A RP P++ +KI+G HP N
Sbjct: 566 AIAHIDVLANFAHQARLNNWA--RPEFTPETS------------IKIQGGRHPVVEALNK 611
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
PND L D R ++TGPNMGGKST +R T L +LA G FVP + L
Sbjct: 612 TPFTPNDTFL-----DSQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAKSAKLG 666
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV++DE+GRGTST+DG ++A
Sbjct: 667 SIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLSLA 726
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE---- 982
+A L +R+ C LFATHY LT+ ++ +NY QE
Sbjct: 727 WACVLDLTKRVKCLCLFATHYFELTE--------------LGGEAGIDNYHVTAQELNGN 772
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSS 1042
L+ L+++ G +S+GLQVA +AG+P V++ A ++K + +++ Q FS+
Sbjct: 773 LILLHKVQHGPASQSHGLQVAKLAGIPANVIKEAQKRLKILEKQQHQHLQNTVQTDLFSA 832
Query: 1043 L 1043
+
Sbjct: 833 I 833
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 170/387 (43%), Gaps = 69/387 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK+ Y LLF+++G FYEL+ DA K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKTDYPHALLFYRMGDFYELFFEDAHQAAKLLG--ITLTHRGKANGEPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRI----EQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--G 387
A E +AR K GR EQ+ E A +R + + RK+V ++TP T D +
Sbjct: 76 YHAAEGYLARLVKAGRTVAICEQVGEGENAGSR-GKAPMERKVVRILTPGTLTDDALLSS 134
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
+ +L+A+ C N GFA +D +A V D L L ++ P E
Sbjct: 135 YQSSNLVAL----CIQQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLAIELARLMPSE 185
Query: 448 VIYE----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF---------L 485
++ + ++ + ++ +K L F+ +A L AV+ L
Sbjct: 186 ILIDEDLIDQNIIEQIKKNLECPITKRPNVDFNLNNAQKTLCDQFAVSTLSGFGLDPIPL 245
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDI 545
+ L+ ++ P ++++ ++ F AL + RN +I
Sbjct: 246 AKAAAAALIHYAKETQKTALPHIRSIQ--IEQSTDFIALDPITR-----------RNLEI 292
Query: 546 LPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK- 602
+ + L G +L+ ++ C T+ G RLL + P++D ++ RLD E L+K
Sbjct: 293 I------EPLFDHGTSLFQLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDASEQLLKG 346
Query: 603 --NSEVVMVVAQYLRKLPDLERLLGRV 627
S V +V L+++ D+ER+L RV
Sbjct: 347 FHESPVRLV----LKEIGDIERVLSRV 369
>gi|379728095|ref|YP_005320280.1| DNA mismatch repair protein MutS [Melissococcus plutonius DAT561]
gi|376318998|dbj|BAL62785.1| DNA mismatch repair protein MutS [Melissococcus plutonius DAT561]
Length = 862
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 170/306 (55%), Gaps = 37/306 (12%)
Query: 722 LDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTASMSSGAMHRPL 772
L+AE S+ +E LF++ Q E I IS +DVL++FA S H
Sbjct: 507 LEAEEKSVDLEYQLFLKVREQIKENIEHLQYLAKTISNLDVLQAFATV----SEKYH--Y 560
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLT 831
+ P+ KN G L I HP G +PN+I + D TLL+T
Sbjct: 561 VCPELKN-------YGKSLSIVEGRHPVVEKVLGYQEYIPNNIEM-----DSATTTLLIT 608
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNM GKST +R L VI+AQ+GCFVP E +L + D IFTR+GA+D ++ G+STF+VE
Sbjct: 609 GPNMSGKSTYMRQLALTVIMAQIGCFVPAESAILPIFDQIFTRIGASDDLIAGQSTFMVE 668
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951
E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + + LF+THYH LT
Sbjct: 669 MMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHQNVRAKTLFSTHYHELT 728
Query: 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
S P + H+ K+N E++FL+++ G +SYG+ VA +AG+P
Sbjct: 729 ILDQSLPDLKNVHVGAIEKNN---------EVIFLHKIMEGPADKSYGIHVAKIAGLPNG 779
Query: 1012 VVEAAS 1017
++E A+
Sbjct: 780 LLERAT 785
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 157/376 (41%), Gaps = 51/376 (13%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY +K QY D LF+++G FYE++ DA + L+ +T +
Sbjct: 6 KNTPMMEQYLTIKEQYSDAFLFYRLGDFYEMFYDDATQAAQLLELTLTSRNKNADEPIPM 65
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-G 384
GI + ++ L+ +GYKV EQ+E + K ++ R++V ++TP T ++
Sbjct: 66 CGIPYHAAQNYIDILIEKGYKVAICEQVEDPKAVKG-----MVKREVVQLITPGTAMNTK 120
Query: 385 TIGPDAVHLLA--IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
TI + + L I +G +G A+VD + + + D+ S + L
Sbjct: 121 TIDAKSNNYLTALISKGTN--------FGLAYVDLSTGELKTTILMDEESVINEASAL-- 170
Query: 443 VSPKEVIYENRGLCKEAQKALRK-----FSAGSAALELTP-AMAVTDFLDASEVKKLVQL 496
KE++ N L L+ FS A E + ++ + E++ +L
Sbjct: 171 -QTKEMVIGN-TLSDSLYTILKNRLNIVFSKQENAEENAEFSFLTSELTNEIEIEVTGKL 228
Query: 497 NGYF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR 552
Y S + +A+E H + + L L +R G
Sbjct: 229 LTYLAITQKRSLAHIQRAVEYQPDHYLKLDSYSKF-----NLELTQSIRTG--------- 274
Query: 553 DCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G L+ LD T+ G RLL+ W+ PL E I R ++V+ L+ M +
Sbjct: 275 ---QKKGTLLWLLDETKTAMGGRLLKQWLDRPLIQEEQIKKRQEMVQSLLDAYFERMDLQ 331
Query: 612 QYLRKLPDLERLLGRV 627
L + DLERL+GRV
Sbjct: 332 TALTSVYDLERLVGRV 347
>gi|217077343|ref|YP_002335061.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B]
gi|217037198|gb|ACJ75720.1| DNA mismatch repair protein MutS [Thermosipho africanus TCF52B]
Length = 817
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 132/209 (63%), Gaps = 14/209 (6%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPNDI + D L R ++TGPNM GKST +R L ++AQ+GCFVP + L + D
Sbjct: 576 VPNDIYM-----DSLRRMYIITGPNMSGKSTYIRQVGLIAVMAQIGCFVPAKNAKLPIFD 630
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+GA D I TG+STFLVE +E A +L KAT+DSLV+LDE+GRGTSTFDG +IA+A+
Sbjct: 631 RIFTRMGARDDISTGKSTFLVEMSEVALILSKATKDSLVLLDEVGRGTSTFDGISIAWAM 690
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRL 989
+ I C+ +FATH+ LT+ L + K+ + + + +VFL+++
Sbjct: 691 SEYIYNEIKCKTIFATHFTELTE---------LSDVYNGIKNLTIEVEETNDGIVFLHKV 741
Query: 990 TSGACPESYGLQVAVMAGVPQKVVEAASH 1018
G SYG++VA +AGVP VVE A
Sbjct: 742 VDGVADRSYGIEVAKIAGVPDGVVERAKE 770
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 170/374 (45%), Gaps = 47/374 (12%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+K ++ KQY ++K Y D ++ F++G FYE + DAEI K L+ I L+
Sbjct: 1 MKNLTPMMKQYMDIKKNYEDAIVLFRLGDFYEAFFEDAEIISKVLN--IVLTKRQNAPMA 58
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGT 385
GI +D+ ++KLV GYKV EQ+E QAK ++ R++ V+TP T + +
Sbjct: 59 GIPHHALDNYLKKLVDSGYKVAICEQMEDPSQAKG-----IVRREVTRVITPGTLIEEDL 113
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVG---TINDDASCAALGALLMQ 442
+ + +L+A+ +N + AFVD + ++V TIND ++
Sbjct: 114 LSSENNYLMAV----AFREN----FNTAFVDVSTGELFVKDFETINDLIDFVSI------ 159
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD-ASEVKKLVQLNGY-- 499
V+ ++I C+E K + + +E F D E K+V ++ +
Sbjct: 160 VNISQII------CEENIFEELKDNLPNKFIEKLDDWYFEGFEDKVKETFKIVSIDHFEL 213
Query: 500 FNGSSSPWS---KALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
NG K LE + ++ L ++ + N ++P +
Sbjct: 214 SNGQLRVLGALLKYLEYTLMSNLALEEPKKLEESKWMILDSKTVDNLSLIPGE------- 266
Query: 557 MDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
G+ LY L+ T+ G RLL+ WI PLK + I R ++V+ + ++ + +YL
Sbjct: 267 -KGKNLYDILNKTKTAMGSRLLKKWILQPLKVKKDIIERQEIVDAFFNDRLLLNEIREYL 325
Query: 615 RKLPDLERLLGRVK 628
+ D+ER+L R++
Sbjct: 326 NGIFDVERILTRLQ 339
>gi|332685817|ref|YP_004455591.1| DNA mismatch repair protein MutS [Melissococcus plutonius ATCC 35311]
gi|332369826|dbj|BAK20782.1| DNA mismatch repair protein MutS [Melissococcus plutonius ATCC 35311]
Length = 862
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 171/309 (55%), Gaps = 35/309 (11%)
Query: 717 HDVTDLDAETLSILIELFIEKASQWSEVIH-------AISCIDVLRSFAVTASMSSGAMH 769
H + + + +++ + +LF++ Q E I IS +DVL++FA S H
Sbjct: 504 HLILEAEEKSVDLEYQLFLKVREQIKENIEYLQYLAKTISNLDVLQAFATV----SEKYH 559
Query: 770 RPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTL 828
+ P+ KN G L I HP G +PN+I + D TL
Sbjct: 560 --YVCPELKN-------YGKSLSIVEGRHPVVEKVLGYQEYIPNNIEM-----DSATTTL 605
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
L+TGPNM GKST +R L VI+AQ+GCFVP E +L + D IFTR+GA+D ++ G+STF
Sbjct: 606 LITGPNMSGKSTYMRQLALTVIMAQIGCFVPAESAILPIFDQIFTRIGASDDLIAGQSTF 665
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + + LF+THYH
Sbjct: 666 MVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHQNVRAKTLFSTHYH 725
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT S P + H+ K+N E++FL+++ G +SYG+ VA +AG+
Sbjct: 726 ELTILDQSLPDLKNVHVGAIEKNN---------EVIFLHKIMEGPADKSYGIHVAKIAGL 776
Query: 1009 PQKVVEAAS 1017
P ++E A+
Sbjct: 777 PNGLLERAT 785
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 156/376 (41%), Gaps = 51/376 (13%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY +K QY D LF+++G FYE++ DA + L+ +T +
Sbjct: 6 KNTPMMEQYLTIKEQYSDAFLFYRLGDFYEMFYDDATQAAQLLELTLTSRNKNADEPIPM 65
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-G 384
GI + ++ L+ +GYKV EQ+E + K ++ R++V ++TP T ++
Sbjct: 66 CGIPYHAAQNYIDILIEKGYKVAICEQVEDPKAVKG-----MVKREVVQLITPGTAMNTK 120
Query: 385 TIGPDAVHLLA--IKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
TI + + L I +G +G A+VD + + + D+ S + L
Sbjct: 121 TIDAKSNNYLTALISKGTN--------FGLAYVDLSTGELKTTILMDEESVINEASAL-- 170
Query: 443 VSPKEVIYENRGLCKEAQKALRK-----FSAGSAALELTP-AMAVTDFLDASEVKKLVQL 496
KE++ N L L+ FS A E + ++ + E++ +L
Sbjct: 171 -QTKEMVIGNT-LSDSLYTILKNRLNIVFSKQENAEENAEFSFLTSELTNEIEIEVTGKL 228
Query: 497 NGYF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR 552
Y S + +A+E H + + L L +R G
Sbjct: 229 LTYLAITQKRSLAHIQRAVEYQPDHYLKLDSYSKF-----NLELTQSIRTG--------- 274
Query: 553 DCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G L+ LD T+ G RLL+ W+ PL E I R ++V+ L+ M +
Sbjct: 275 ---QKKGTLLWLLDETKTAMGGRLLKQWLDRPLIQEEQIKKRQEMVQSLLDAYFERMDLQ 331
Query: 612 QYLRKLPDLERLLGRV 627
L + DLERL GRV
Sbjct: 332 TALTSVYDLERLAGRV 347
>gi|153206840|ref|ZP_01945681.1| DNA mismatch repair protein MutS [Coxiella burnetii 'MSU Goat Q177']
gi|165918512|ref|ZP_02218598.1| DNA mismatch repair protein MutS [Coxiella burnetii Q321]
gi|120577203|gb|EAX33827.1| DNA mismatch repair protein MutS [Coxiella burnetii 'MSU Goat Q177']
gi|165917758|gb|EDR36362.1| DNA mismatch repair protein MutS [Coxiella burnetii Q321]
Length = 859
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 161/294 (54%), Gaps = 28/294 (9%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E L++ IEK + AI+ +DVL + A A + N
Sbjct: 532 EKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNA 577
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
Q P++KI+ HP +PND L E R L++TGPNMGGKST +
Sbjct: 578 PQFCDYPIIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYM 632
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R T L +LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L A
Sbjct: 633 RQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNA 692
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV++DE+GRGTSTFDG ++AYA L ++ LFATHY LT ++ P V
Sbjct: 693 TEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKN 752
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H+ + +++++FL+ L G +SYGLQVA +AG+P+ V++ A
Sbjct: 753 VHLDAV---------EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHA 797
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 81
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 82 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 136
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 137 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 185
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 186 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 236
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 237 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 287
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 288 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 346
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 347 ENLRHIGDLERIVARIALR 365
>gi|328870366|gb|EGG18740.1| mutS like protein [Dictyostelium fasciculatum]
Length = 923
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/337 (34%), Positives = 179/337 (53%), Gaps = 34/337 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ +DV S +S + RP++ P K + I G HP ++
Sbjct: 619 IATLDVFASLGHVSSSAPSPYVRPIVHPMGKGN----------ITIVGGRHPCVEVQDNV 668
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ NDI L D ++TGPNMGGKST +R + ++AQ+GCFVP E +S+
Sbjct: 669 NFISNDIDLTRDK----STFQIITGPNMGGKSTFIRQVGIITLMAQIGCFVPAEQAEISI 724
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D I TR+GA D + G STF+ E ETA +L+ AT++SL+I+DELGRGTST+DG+ +A+
Sbjct: 725 VDCILTRIGAGDSQLRGVSTFMAEMLETAYILKTATKNSLIIIDELGRGTSTYDGFGLAW 784
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
+ + +I LFATH+H LT P +T++++ ++N ++S L +Y
Sbjct: 785 GIAEYICHQIGAFCLFATHFHELTVLQEILP-LTVKNLHV--QANVNDHSG----LTLMY 837
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEW 1047
++ GAC +S+G+ VA+MAG P +VV+ A A ++ S S + S+F
Sbjct: 838 KVKEGACDQSFGIHVAIMAGFPDQVVQVARLKAKELESFESNSLASLDSVSQF------- 890
Query: 1048 LKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSYQLH 1084
I + +D D D +F L + L + YQL+
Sbjct: 891 ---IQDFKSLDMQQQDQDK---VFNLVNNLLSKYQLN 921
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 34/240 (14%)
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE-VIYENRGLCKEAQKALR 464
G+ V G AF D + V D+ + L + L+Q+ KE +I ++ + +K +
Sbjct: 183 GNRVIGAAFGDSTLKTIGVLQFIDNDHLSNLSSFLLQMGIKECLISVDKKNSVDCKKVMD 242
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
K P +DF + + L +L G N + N ++ ++ +L
Sbjct: 243 KLQDSEVPFTEVPN---SDFNTKNIEQDLTRLLGSINN--------VLNEIEKELAMQSL 291
Query: 525 GGLISHLSRLM--------------LDDVLRNGDILPYK----VYRDCLRMDGQTLY--L 564
LI HL L LD+ +R D +K + D G +++ L
Sbjct: 292 SCLIKHLDLLSNQSYFGKFKLVSFNLDNFMR-LDAATFKGLNIISSDPTNKQGMSIFNLL 350
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLERL 623
D C T G R L W+ PL D E I RL+ VE + E+ + + L+K+ DLERL
Sbjct: 351 DKCNTPMGSRKLSQWVRQPLVDQEEIETRLNFVEIFVNALELRQALRSNDLKKIGDLERL 410
>gi|326471384|gb|EGD95393.1| DNA mismatch repair protein Msh3 [Trichophyton tonsurans CBS 112818]
Length = 1040
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/324 (36%), Positives = 170/324 (52%), Gaps = 23/324 (7%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
DA L +L ++ K + + I A++ ID L S +V A+ P P
Sbjct: 720 DAAFLKLLSDIST-KYQLFRDCIQALATIDALHSLSVIAAQ-----------PGYVKPKY 767
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
D V+ I HP VPND L D R LL+TGPNMGGKS+ +
Sbjct: 768 TDDT---VINISQGRHPMVEKVLIDSYVPNDTQLSTDET----RALLVTGPNMGGKSSYV 820
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L I+ Q+G +VP E L + D ++TR+GA D ++ GESTF+VE +ETA +L++A
Sbjct: 821 RQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADILKQA 880
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLVILDELGRGTST DG AIA AV +V + LF THY L++ ++ P L
Sbjct: 881 TPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSRLASAFPGGEL 940
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
+++ F +E +G Q++ FLY + G SYGL VA +A +P +++ A +
Sbjct: 941 RNVHMKF---TETGDQG-QDITFLYEIGEGVAHRSYGLNVAKLANIPAGILDVAQVKSQE 996
Query: 1023 MKKSIGESFKSSEQRSEFSSLHEE 1046
++ IG R F +L +E
Sbjct: 997 LEAKIGRKKMGGVLRGIFQTLSDE 1020
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/424 (21%), Positives = 169/424 (39%), Gaps = 76/424 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ ++Q +K++++D +L +VG Y+ Y DA K L D +
Sbjct: 130 KLTPMERQIMEIKNKHLDAVLLIQVGYKYQFYGEDARTAAKVLSIVCIPGKLRFDDHPSE 189
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + + + V++LVA GYKVG ++QLET+ +A + N+ RKL N+
Sbjct: 190 AHLTRFASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMY 249
Query: 377 TPSTTVD--------GTIGPDAVHLLAIKE-GNCGPDNGS-VVYGFAFVDCAALRVWVGT 426
T +T ++ G + +LL + E G G +G V G V A V +
Sbjct: 250 TKATYIEDDAELELSGALEASTGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIHDS 309
Query: 427 INDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD 486
D + + L+ +SP E++ L K ++ S G +T F D
Sbjct: 310 FEDGFMRSEIETRLLHISPCELLLVG-DLSAATNKLVQHLSKGR----------MTTFGD 358
Query: 487 ASEVKKLVQ-----------LNGYFNG----SSSPWSKALENVMQHDIGFS-----ALGG 526
+++ + ++ ++ G + SP N++ + L
Sbjct: 359 NVRIERKEKSKTAAAEAHSHISSFYAGKLAATGSPEDAKASNLLDQVLKLPDDVTVCLSA 418
Query: 527 LISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY--------------------LDS 566
+I HL+ L+ V R + ++G TL ++
Sbjct: 419 MIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKGSLFWSMNR 478
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLERL 623
T G+RLLR W+ PL + + R + V L+ + + + + L ++ DLE+
Sbjct: 479 TRTKFGQRLLRRWVGRPLLEKAKLEERTEAVTELLDSDKSTLTYNLGSTLSQVRVDLEKA 538
Query: 624 LGRV 627
L RV
Sbjct: 539 LIRV 542
>gi|326389401|ref|ZP_08210968.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW
200]
gi|325994406|gb|EGD52831.1| DNA mismatch repair protein MutS [Thermoanaerobacter ethanolicus JW
200]
Length = 867
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ D ++ IK HP +
Sbjct: 552 IATIDVLISFAEVAE--TNRYIKPIV-----------DYSDRIV-IKEGRHPVIETISDE 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 598 SFVANDIDIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGI 652
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L+ AT SL+ILDE+GRGTST+DG +IA+
Sbjct: 653 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTSTYDGMSIAH 712
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL
Sbjct: 713 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKMRGVRNYNVSVEEREDDIIFLR 763
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHA--ALAMKKSIGESFKSSEQRSEFSSL 1043
++ G +SYG+QV+ +AG+P +VE A +L K I +++ Q+ F+ +
Sbjct: 764 KIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLESDKVIKSELENASQQLAFTQI 821
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 175/378 (46%), Gaps = 52/378 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KL+ +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKG-----LVKRDVVRIYTPGTI----INPESM 118
Query: 392 ------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+L+++ +G DN YG VD ++ + + + + + +P
Sbjct: 119 DEKTNNYLVSVFKGR---DN----YGICAVDVTTGDLYATELKNCKDIKRVYDEITKYAP 171
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E+I N K K ++ F + A+ + LD E KL++ FN S
Sbjct: 172 SEII-ANEDFLKN-NKYIKIFKNNNCAVNIYEKQ-----LDYEEKIKLIETQ--FNKKSE 222
Query: 506 PWSKALENVMQHDIG--FSALGGL----ISHLSRLML----------DDVLRNGDILPYK 549
+ M + + FS L L + H+++L++ + ++N +IL
Sbjct: 223 ELGIKDKPYMANSLAALFSYLQELQKTALKHINKLLIYEDNSYMGLDSNAIKNLEILESN 282
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R+ + LD VT G RLL+ W+ PL + E I+ RL+ VE L + +
Sbjct: 283 --RNKSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLEAVEELFNDYKNRQD 340
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q+L K+ DLERL ++
Sbjct: 341 LKQFLNKIYDLERLASKI 358
>gi|160933107|ref|ZP_02080496.1| hypothetical protein CLOLEP_01950 [Clostridium leptum DSM 753]
gi|156868181|gb|EDO61553.1| DNA mismatch repair protein MutS [Clostridium leptum DSM 753]
Length = 873
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/275 (40%), Positives = 162/275 (58%), Gaps = 28/275 (10%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
+AI+ +DVL SFA A + RP + K V +++ PV+++ PF
Sbjct: 553 NAIAQLDVLCSFARVAVKNQYC--RPEVNLSGK--IVLKESRHPVVELLSDASPF----- 603
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
VPND LL +D + R L++TGPNM GKST +R L ++AQLG FVP +
Sbjct: 604 ----VPNDALLDQDEN----RVLVITGPNMAGKSTYMRQIALIALMAQLGSFVPAASAEI 655
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
L D IFTR+GA+D + +G+STF+VE E A +L++AT +SL++LDE+GRGTSTFDG +I
Sbjct: 656 GLVDQIFTRVGASDDLASGQSTFMVEMNEVADILKRATSNSLLVLDEIGRGTSTFDGMSI 715
Query: 926 AYAVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL 983
A AV +V+ ++ + LFATHYH LT+ ++ + K+ S K ++
Sbjct: 716 ARAVLEFVVDKRKLGAKTLFATHYHELTE---------MEELMDGVKNYSIAVKKRGDDI 766
Query: 984 VFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
FL R+ G +SYG++VA +AG+PQ V+ A
Sbjct: 767 TFLRRIIRGGADDSYGIEVAKLAGLPQPVINRAKQ 801
Score = 84.7 bits (208), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 104/449 (23%), Positives = 191/449 (42%), Gaps = 68/449 (15%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ ++S +QY +K++ +LFF++G FYE++ DA + KEL+ +T G+ ++
Sbjct: 1 MAELSPMMQQYQKIKAENQGAILFFRLGDFYEMFFDDAVLASKELELTLTARDCGQNKKA 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + + +L+++GYKV EQ+E AK ++ R ++ VVTP T ++
Sbjct: 61 PMCGVPYHSSESYIARLISKGYKVAICEQMEDPALAKG-----LVKRDIIRVVTPGTVLE 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G++ + + G D+ G F D + ++ +++ D L L +
Sbjct: 116 GSMLDEGKNNFICSIYAIG-DHA----GICFCDISTGELYSTSLDKDLENEILNE-LGRF 169
Query: 444 SPKEVIY--ENRGLCKEAQKALRKFSA-----GSAALELTPAMAVTDFLDASEVKKLVQL 496
SP+E++ E + K A K SA A EL E + +
Sbjct: 170 SPREILIGGETVNMKKLAPFIRDKLSACVEMREDAEFELETCRRTVLEQFKKETLDDLGM 229
Query: 497 NGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL-------------------SRLMLD 537
G D SALG L+++L ++ M
Sbjct: 230 EG------------------QDQAVSALGALLNYLKDTQRKVPLKINRIENYTQAQFMGI 271
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597
D+ ++ + R+ + LD T+ GKRLLR+WI PL I R + V
Sbjct: 272 DLNTRRNLELLETMRNKEKRGSLLWVLDQTKTAMGKRLLRTWIEQPLLSCGKIIRRQNAV 331
Query: 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRV--------KARVQASSCIVLPLIGKKVLKQ 649
E L + + +A L + DL+RL+ R+ + R +++ +LP + K + +
Sbjct: 332 EELYCDPFLCGNLADQLTGVFDLQRLITRIVYGTANGRELRSLSATIGLLPELKKMLENR 391
Query: 650 QVKVFGSLVKGLRIAMDLLMLMHKEGHII 678
+ ++ S+ + L D+ L+ EG I+
Sbjct: 392 KSELLQSIYEDLDTLEDVHDLI--EGSIV 418
>gi|405118126|gb|AFR92901.1| DNA mismatch repair protein MSH2 [Cryptococcus neoformans var. grubii
H99]
Length = 954
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 169/295 (57%), Gaps = 18/295 (6%)
Query: 730 LIELFIEKASQWSEVI----HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L++ + AS ++ V+ + I+ +DV+ S A +S + +P K P + +
Sbjct: 585 LVKEVVSIASSYTPVLEMLDNLIAAVDVIVSMAHVSSEAP--------IPYVK-PILTEK 635
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G V+ + G HP ++ + +PND + + + + +LTGPNMGGKST +R
Sbjct: 636 GTGDVV-VLGARHPCLEVQDDIVFIPNDHEMRKGDSEFI----ILTGPNMGGKSTYIRQI 690
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVP L + D I R+GA D + G STF+ E ETA++L+ AT+D
Sbjct: 691 GVIALMAQVGCFVPATEARLPIFDCILARVGAGDNQLKGVSTFMAEMLETATILRSATKD 750
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ + E+I+C LFATH+H LT +PHV H+
Sbjct: 751 SLIIIDELGRGTSTYDGFGLAWAISEYIAEKIHCFCLFATHFHELTTLSEKNPHVKNLHV 810
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
K ++++ LY++ G C +S+G+ VA +A P+ VV+ A A
Sbjct: 811 EALVKDKDGEGGGKERDITLLYQVKEGICDQSFGIHVAELANFPESVVKLAKRKA 865
Score = 43.5 bits (101), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS-EVVMVVAQYLRKLPDLER 622
L+ C TS G RLL W+ PL + I R +VE +++S + +YL+++PD R
Sbjct: 335 LNRCKTSQGTRLLGRWLKQPLVNRHEIIQRQTMVEVFVEDSVNRQSIQTKYLKQMPDFHR 394
Query: 623 LLGRVKARVQASSCIV 638
+ + RV +V
Sbjct: 395 ISKKFHKRVAGLEDVV 410
>gi|367031938|ref|XP_003665252.1| hypothetical protein MYCTH_2308779 [Myceliophthora thermophila ATCC
42464]
gi|347012523|gb|AEO60007.1| hypothetical protein MYCTH_2308779 [Myceliophthora thermophila ATCC
42464]
Length = 873
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 28/320 (8%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L+ + A+ ++ V+ ++ I DV+ SFA + + + RP I P+ +
Sbjct: 488 TQSGLVNEVVGVAASYTPVLERLAGILAHLDVIVSFAHCSVHAPISYVRPKIHPRGEGQT 547
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
+ + P L++ ++ + ND+ L D L ++TGPNMGGKST
Sbjct: 548 ILTEARHPCLEM----------QDDVQFITNDVELTRDKSSFL----VITGPNMGGKSTY 593
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R + ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+
Sbjct: 594 IRQIGVIALMAQIGCFVPCSTAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKS 653
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT +SL+I+DELGRGTST+DG+ +A+A+ +V+ I C LFATH+H LT +P V
Sbjct: 654 ATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPQVR 713
Query: 962 LQHMACAFKSNSENYSKG-----DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H+ + SK +E+ LY++ G C +S+G+ VA + P KVV A
Sbjct: 714 NLHVTAHISGTDSSSSKKKTGTEKREVTLLYKVEPGVCDQSFGIHVAELVRFPDKVVRMA 773
Query: 1017 SHAALAMKKSIGESFKSSEQ 1036
A + E F S++Q
Sbjct: 774 KRKADEL-----EDFTSAKQ 788
Score = 47.0 bits (110), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 123/320 (38%), Gaps = 57/320 (17%)
Query: 345 YKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-----GTIGPDAVHLLAIKEG 399
YK+G+ ++ S N ++ K+V +P D G++ A +LA+K
Sbjct: 15 YKLGKRVEIWAS-------PNGRMNWKIVKQASPGNLQDVEEDLGSLSEAAPIILAVKIS 67
Query: 400 NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEA 459
+ SV G F D + + V D+ + ALL+Q+ KE + KE
Sbjct: 68 TKASEARSV--GVCFADASVRELGVSEFLDNDLYSNFEALLIQLGVKECLIHMEKADKEK 125
Query: 460 QKALRKFSA-----------------GSAALELTPAMAVTD-----FLDASEVKKLV--- 494
L K G+ +E A + D L +++K +
Sbjct: 126 DPELAKLRQIIDNCGIAISERPAADFGTKDIEQDLARLLKDERSATLLPQTDLKLAMGAA 185
Query: 495 -QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVY 551
L Y P + + QHD L++ M D L+ +++P
Sbjct: 186 SALIKYLGVLHDPSNFGQYQLYQHD------------LAQFMKLDAAALKALNLMPSA-- 231
Query: 552 RDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV- 610
RD + L+ C T G RLL W+ PL D I R +VE + ++E+ +
Sbjct: 232 RDGAKTMSLFGLLNHCRTPLGSRLLAQWLKQPLMDKSEIEKRQQLVEAFVNDTELRQTMQ 291
Query: 611 AQYLRKLPDLERLLGRVKAR 630
++LR +PDL RL R + +
Sbjct: 292 EEHLRAIPDLYRLAKRFQRK 311
>gi|167037586|ref|YP_001665164.1| DNA mismatch repair protein MutS [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116001|ref|YP_004186160.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856420|gb|ABY94828.1| DNA mismatch repair protein MutS [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929092|gb|ADV79777.1| DNA mismatch repair protein MutS [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 867
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 30/298 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ D ++ IK HP +
Sbjct: 552 IATIDVLISFAEVAE--TNRYIKPIV-----------DYSDRIV-IKEGRHPVIETISDE 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 598 SFVANDIDIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGI 652
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L+ AT SL+ILDE+GRGTST+DG +IA+
Sbjct: 653 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTSTYDGMSIAH 712
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL
Sbjct: 713 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHA--ALAMKKSIGESFKSSEQRSEFSSL 1043
++ G +SYG+QV+ +AG+P +VE A +L K I +++ Q+ F+ +
Sbjct: 764 KIVPGGADKSYGIQVSKLAGLPYSIVERAKEILNSLENDKVIKSELENASQQLAFTQI 821
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 174/378 (46%), Gaps = 52/378 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KL+ +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKG-----LVKRDVVRIYTPGTI----INPESM 118
Query: 392 ------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+L+++ +G DN YG VD ++ + + + + + +P
Sbjct: 119 DEKTNNYLVSVFKGR---DN----YGICAVDVTTGDLYATELKNCKDIKRVYDEITKYAP 171
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E+I N K K ++ F + A+ + LD E KL++ FN S
Sbjct: 172 SEII-ANEDFLKN-NKYIKIFKNNNCAVNIYEKQ-----LDYEEKIKLIETQ--FNKKSE 222
Query: 506 PWSKALENVMQHDIG--FSALGGL----ISHLSRLML----------DDVLRNGDILPYK 549
+ M + + FS L L + H+++L++ + ++N +IL
Sbjct: 223 ELGIKDKPYMANSLAALFSYLQELQKTALKHINKLLIYEDNSYMGLDSNAIKNLEILESN 282
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R+ + LD VT G RLL+ W+ PL E I+ RL+ VE L + +
Sbjct: 283 --RNKSKKGSLLGVLDKTVTPMGGRLLKKWLEEPLLSKEHIDARLEAVEELFNDYKNRQD 340
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q+L K+ DLERL ++
Sbjct: 341 LKQFLNKIYDLERLASKI 358
>gi|302874906|ref|YP_003843539.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B]
gi|307690474|ref|ZP_07632920.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B]
gi|302577763|gb|ADL51775.1| DNA mismatch repair protein MutS [Clostridium cellulovorans 743B]
Length = 901
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 162/285 (56%), Gaps = 28/285 (9%)
Query: 732 ELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
EL +++ + + I+ ID L S A+ A ++ RP I D G ++
Sbjct: 531 ELVLKEVLRMQQSARLIATIDCLNSLAIVALENN--YTRPAI-----------DVSG-II 576
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
IK HP LP N I D + L++TGPNMGGKST +R L I+
Sbjct: 577 NIKEGRHPVV---EKLLPTGNFISNSISLDREENQLLIITGPNMGGKSTYMRQCALITIM 633
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+G FVP E + + D +FTR+GA+D + G+STF+VE E A++L AT +SLV+LD
Sbjct: 634 AQIGSFVPAESATIGICDKVFTRIGASDDLAGGKSTFMVEMWEVANILNNATNNSLVLLD 693
Query: 912 ELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
E+GRGTST+DG +IA+AV L + + C+ LFATHYH LTK L+
Sbjct: 694 EVGRGTSTYDGLSIAWAVIEFLTTNKNVKCKTLFATHYHELTK---------LEAEFSGV 744
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
K+ S K +E++FL+++ GA ESYG++VA +AG+PQ V++
Sbjct: 745 KNYSVGVKKIGEEIIFLHKIVKGAADESYGIEVARLAGLPQAVLD 789
Score = 71.2 bits (173), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
++ +QY +K + +LFF++G FYE++ DA+I +EL+ +T G +
Sbjct: 3 LTPMMQQYLQIKEENPQCILFFRLGDFYEMFFEDAKIASRELELVLTGRDCGLEERAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
GI + + KLV+RGYKVG EQLE AK ++ R +V V TP T ++G
Sbjct: 63 GIPYHAANVYISKLVSRGYKVGICEQLEDPSVAKG-----IVKRGIVKVYTPGTYIEGNF 117
Query: 387 GPD 389
D
Sbjct: 118 LED 120
Score = 44.7 bits (104), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 552 RDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
RD + LD T+ G R LR WI PL + I RL+ V L+ N + +
Sbjct: 277 RDKTKKGSLLWVLDKTSTAMGARELRKWIDQPLINKNAIELRLEAVAELVSNLSLQEELK 336
Query: 612 QYLRKLPDLERLLGRVKAR 630
L+ + D+ERL+G+V ++
Sbjct: 337 VLLKDIYDIERLVGKVSSK 355
>gi|328957012|ref|YP_004374398.1| DNA mismatch repair protein MutS [Carnobacterium sp. 17-4]
gi|328673336|gb|AEB29382.1| DNA mismatch repair protein MutS [Carnobacterium sp. 17-4]
Length = 874
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 177/315 (56%), Gaps = 35/315 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIH-------AISCIDVLRSFAVTAS 762
P+ + +V L+AE S+L+E LF E + I ++ IDVL+SFA +
Sbjct: 498 PELKEKEVLILEAEEKSMLLEYTLFAEVRETIKDYIERLQNLAKTVAAIDVLQSFATISE 557
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RPL+ S+ ++ + V K+ LG+ VPN + + +D++
Sbjct: 558 KYHYT--RPLMAANSQEISLIEGRHPVVEKV--------LGQQTY--VPNSVEMDQDNE- 604
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L VI+AQ+GCFVP + ++ + D IFTR+GA D ++
Sbjct: 605 ----ILLITGPNMSGKSTYMRQLALTVIMAQMGCFVPADKAIMPIFDQIFTRIGAADDLI 660
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ A+++SL++ DE+GRGT+T+DG A+A A+ + E ++ + L
Sbjct: 661 AGQSTFMVEMMEANEALRYASKNSLILFDEIGRGTATYDGMALAEAIIEYIHENVHAKTL 720
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT +T H+ + + ELVFL+++ G +SYG+QV
Sbjct: 721 FSTHYHELTVLDERLTRLTNVHVGAV---------EEEGELVFLHKMLPGPADKSYGIQV 771
Query: 1003 AVMAGVPQKVVEAAS 1017
A +AG+P ++ A+
Sbjct: 772 AKLAGLPDDLLSRAA 786
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 46/374 (12%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY +K+ Y D LF+++G FYEL+ DA + L+ +T +
Sbjct: 6 KQTPMMEQYLGIKANYPDAFLFYRLGDFYELFNEDAIKASQLLEVTLTSRNRNADEPIPM 65
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ ++ L+ RGYKV EQ+E + AK ++ R++V ++TP T +D T
Sbjct: 66 CGVPYHAAKGYIDSLIERGYKVAICEQVEDPKTAKG-----MVKREVVQLITPGTAMD-T 119
Query: 386 IGPDAV---HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
DA +L AI N Y A+ D + + +N S A+ + LM
Sbjct: 120 KSMDAKTNNYLAAIMGTNTDH------YHLAYADLSTGELKTTKLN---SLEAVMSELMS 170
Query: 443 VSPKEVIYENRGLCKEAQKALRK-----FSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
+ KEV+++ + + Q L S +E +T ++ S++ +V+L
Sbjct: 171 LKAKEVVFK-EAMEVDVQAELETKLGIMVSTQKEMIERAEFSYLTSEIENSDLIDVVKL- 228
Query: 498 GYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDV--LRNGDILPYKVYRDC 554
F+ + L ++ + ++ +S L + H S+ L+ V +R G
Sbjct: 229 -LFSYLYVTQKRNLGHLQKVEV-YSPTNYLKMDHYSKHNLELVSSIRTG----------- 275
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ G L+ LD T+ G RLL+ WI PL + I R ++VE L+ + + +
Sbjct: 276 -QKKGTLLWLLDETKTAMGGRLLKQWIDRPLIQEQQIMMRQNIVESLINHFFERTDLNEA 334
Query: 614 LRKLPDLERLLGRV 627
L ++ DLERL GRV
Sbjct: 335 LTRVYDLERLAGRV 348
>gi|449514801|ref|XP_002190416.2| PREDICTED: DNA mismatch repair protein Msh3 [Taeniopygia guttata]
Length = 963
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 169/327 (51%), Gaps = 33/327 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
++ F E S+ I ++ +D L S A A G RP + QDN
Sbjct: 636 FLDHFSEHYHPVSKAICHLATVDCLFSLAQVAK--QGDYCRPTV----------QDNRRE 683
Query: 790 VLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
++ IK HP LGE VPN L D + R +++TGPNMGGKS+ ++
Sbjct: 684 II-IKNGRHPVIDVLLGEQDQY-VPNTTSLSGDGE----RVMIITGPNMGGKSSYIKQVA 737
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L ++AQ+G FVP E + + D IFTR+GA D I G STF+ E T+TA +++KAT S
Sbjct: 738 LITVMAQIGSFVPAEEATIGVVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSRS 797
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH-VTLQHM 965
LVILDELGRGTST DG AIAYA + + LF THY + + +PH V HM
Sbjct: 798 LVILDELGRGTSTHDGIAIAYATLEHFIRDVQALTLFVTHYPSVCELQQRYPHAVGNYHM 857
Query: 966 ACAFKSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
A G E + FLY++T G SYGL VA +A +P+++++ A+H +
Sbjct: 858 AFLLSEEDAGQHTGQLEENPEFITFLYQITKGVSARSYGLNVAKLADIPEEILKNAAHKS 917
Query: 1021 LAMKKSIGESFKSSEQRSEFSSLHEEW 1047
+++ + + +R + S E W
Sbjct: 918 KELERIV------NMKRRKMKSFAEAW 938
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 113/427 (26%), Positives = 183/427 (42%), Gaps = 81/427 (18%)
Query: 258 RTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL 317
+++Y P E Q+ +K +Y D +L + G Y + DAEI KEL+ L
Sbjct: 52 KSIYTPLEL---------QFIEMKKKYKDAVLCVECGYKYRFFGQDAEIAAKELNIYCHL 102
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
I + V +LVA+G+KVG I+Q+ET+ +A + +S+ SRKL +
Sbjct: 103 DH--NFMTASIPSHRLFVHVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALY 160
Query: 377 TPSTTVDGTIGP-----DAV------------HLLAIKE-GNCGPD--NGSVVYGFAFVD 416
T ST + + P DAV +LL I E G+ D G +V G +
Sbjct: 161 TKSTLIGEDVNPLLKLDDAVDVEEVTADVPDNYLLCICENGDSLKDRKKGDIVTGIVAIQ 220
Query: 417 CAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSA-------- 468
V + D AS + L + ++++ P E+I +R L +++K + ++
Sbjct: 221 PTTGEVIFDSFRDCASRSELESRVLRLQPVEIILPSR-LSDQSEKLIHSITSMRLQDDRI 279
Query: 469 -----GSAALELTPAM-AVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFS 522
+ E + A VTDF A EV G++ P + ++ + +
Sbjct: 280 RIERMENLNFEYSHAFQKVTDFY-AKEVP----------GTAGPQNLSVILSLDKPV-IC 327
Query: 523 ALGGLISHLSRLMLDDVLRN-GDILPYKVYRDCLRMDGQTL------------------- 562
+L +I++L L+ +L N + + + ++G T+
Sbjct: 328 SLAAVITYLKEFNLEKMLYNPSNFKQLSSEAEYMTLNGTTMKNLEILQNQTDMKTKGSLL 387
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDL 620
LD TS G+R L+ W+ PL + IN RLD V E L+ S V + L KLPDL
Sbjct: 388 WVLDHTKTSFGRRRLKKWVTQPLLKLSEINARLDAVSEILLSESSVFGQIQNLLCKLPDL 447
Query: 621 ERLLGRV 627
ER L V
Sbjct: 448 ERGLCSV 454
>gi|365763167|gb|EHN04697.1| Msh2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 964
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 169/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKXVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|392966904|ref|ZP_10332323.1| DNA mismatch repair protein MutS [Fibrisoma limi BUZ 3]
gi|387845968|emb|CCH54369.1| DNA mismatch repair protein MutS [Fibrisoma limi BUZ 3]
Length = 883
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 181/358 (50%), Gaps = 50/358 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAI-------SCID 752
L E I + +Y++ + + + + SI +F E E + AI S +D
Sbjct: 509 LVNAERYITPELKEYED-KILNAEEQIFSIESRMFSEMVMAAGEYVAAIQQNARVLSVLD 567
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD-NGGPVLKIKGLWHPFALGE--NGGLP 809
VL SFA A KN VR + VL IK HP + G
Sbjct: 568 VLASFAHIAL---------------KNRYVRPEITESKVLNIKDGRHPVIEQQLPPGEPY 612
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
+PND+ L DD + +++TGPNM GKS LLR T L V++AQ G FVP + L D
Sbjct: 613 IPNDVYL----DDETQQIVIITGPNMAGKSALLRQTALIVLMAQSGSFVPASSAEIGLVD 668
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
IFTR+GA+D + GESTF+VE TETAS+L ++ SLV++DE+GRGTST+DG +IA+A+
Sbjct: 669 KIFTRVGASDNLSRGESTFMVEMTETASILNNLSERSLVLMDEIGRGTSTYDGVSIAWAI 728
Query: 930 FRQLVERINCR--LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
L +CR LFATHYH L +P + ++A N +++FL
Sbjct: 729 TEYLHNHSDCRPKTLFATHYHELNDLANDNPRIKNYNVAVKEMGN---------KVIFLR 779
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVE---------AASHAALAMKKSIGESFKSSEQ 1036
+L G S+G+ VA MAG+P VV ASH A K+ I + S EQ
Sbjct: 780 KLQEGGSEHSFGIHVAQMAGMPGSVVNRAGQILKQLEASHIREANKEKISMAGPSQEQ 837
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 16/193 (8%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC 323
P K + +QY VK++Y LL F+VG FYE + DA K L +T G
Sbjct: 9 PTKPAKETPLNRQYNQVKAKYPGALLLFRVGDFYETFGEDAIKASKILGITLTKRNNGGA 68
Query: 324 RQ--VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
+ G +D + KLV G +V +QLE QAK ++ R + +VTP +
Sbjct: 69 NEELAGFPHHALDTHLPKLVRAGERVAICDQLEDPAQAKG-----IVRRGVTELVTPGVS 123
Query: 382 V-DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
D + + LA D +G AF+D + N A + LL
Sbjct: 124 FNDNVLDTRRNNYLAAVHFGKSDDQ----FGIAFLDISTGEFLASQGN----SAYIDKLL 175
Query: 441 MQVSPKEVIYENR 453
+P EV+Y R
Sbjct: 176 QSFNPSEVLYCKR 188
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G RLLR W+ PLK+ I RL++V+ L ++ E++ ++ +L+++ DLERL
Sbjct: 301 LDQTVTPMGARLLRKWLNLPLKEKALIEERLNMVDLLHQDDELLEIMVGHLKQIGDLERL 360
Query: 624 LGRVKAR 630
+ +V R
Sbjct: 361 VSKVAVR 367
>gi|336363101|gb|EGN91554.1| hypothetical protein SERLA73DRAFT_164445 [Serpula lacrymans var.
lacrymans S7.3]
Length = 888
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 173/312 (55%), Gaps = 20/312 (6%)
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVI----HAISCIDVLRSFAVTASMSSGAM 768
DYQ + TD + T S L++ + A+ ++ V+ H I+ +DV+ SFA + +
Sbjct: 507 DYQ--ETTDTYSRTQSGLVKEVVNIAATYTPVLEALDHVIAHLDVILSFAHVSVNAPEPY 564
Query: 769 HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTL 828
+P++L + G L +K HP ++ +PND+ + +D +
Sbjct: 565 VKPVML----------EKGTGNLILKEARHPCLEVQDDISFIPNDVEMIKDESEFQ---- 610
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
++TGPNMGGKST +R + ++AQ GCFVPC + + D++ R+GA D + G STF
Sbjct: 611 IITGPNMGGKSTYIRQVGVIALMAQTGCFVPCSEAHVPIFDSVLCRVGAGDSQLKGVSTF 670
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+ E ETA++L+ AT+DSL+I+DELGRGTST+DG+ +A+A+ + +I LFATH+H
Sbjct: 671 MAEMLETATILKSATKDSLIIIDELGRGTSTYDGFGLAWAISEHIASQIRAFCLFATHFH 730
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT HV H+ + + +Q++ LY++ G +S+G+ VA +A
Sbjct: 731 ELTALDQELSHVKNLHVVAHVTQGDDEVASLNQDITLLYKVEPGVSDQSFGIHVAKLANF 790
Query: 1009 PQKVVEAASHAA 1020
P+ VV+ A A
Sbjct: 791 PENVVKLAKRKA 802
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 109/274 (39%), Gaps = 48/274 (17%)
Query: 393 LLAIKEGNCGPDNGSV-VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
++AIK + D G AF D + ++ V D+ + +L++Q+S KE +
Sbjct: 74 VMAIKIVSASADKTKTKTVGIAFADTSIRQLGVADFVDNDLFSNTESLIIQLSVKEALIP 133
Query: 452 NRGLCKEAQKA--LRKFSA-----GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504
+ L K A G E P+ ++ +K LVQ G
Sbjct: 134 TGTASGNTDRDIDLNKLKAVLERCGVVITEKKPSEFTAKNIEDDLMKLLVQDPGSSATVG 193
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV------LRNGDILPYKVYRDCLRMD 558
+P + + + + SAL L+++LS L+ D +R D+ Y +R+D
Sbjct: 194 NPQTIS---QLSLPVAPSALSALVNYLS-LLTDPSNHGAFSIRTHDLSQY------MRLD 243
Query: 559 GQTL-----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
L L+ C T+ G RLL SW+ PL ++ I R +
Sbjct: 244 ASALRALNLTEPPGSAGSINRNATLLGLLNKCKTAQGTRLLGSWLKQPLVNLHEIQKRQN 303
Query: 596 VVEYLMKNSEVVMVVA-QYLRKLPDLERLLGRVK 628
+VE + +S + +L+ +PD+ R+ R K
Sbjct: 304 LVEMFVDDSSTRRNLQDDFLKFMPDMHRISKRFK 337
>gi|394988846|ref|ZP_10381681.1| hypothetical protein SCD_01254 [Sulfuricella denitrificans skB26]
gi|393792225|dbj|GAB71320.1| hypothetical protein SCD_01254 [Sulfuricella denitrificans skB26]
Length = 798
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 137/227 (60%), Gaps = 15/227 (6%)
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+++I G HP + + ND LL + LL+TGPNMGGKST +R T L V
Sbjct: 581 MIEITGGRHPVVEAQTANF-IANDSLLSRTR-----QMLLITGPNMGGKSTYMRQTALIV 634
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G FVP + D IFTR+GA+D + G STF+VE TETA +L AT++SLV+
Sbjct: 635 LLAHCGSFVPAARAKIGPVDQIFTRIGASDDLAGGRSTFMVEMTETADILNNATENSLVL 694
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDE+GRGTSTFDG A+A+A+ R L+E+ C LFATHY LT+ +T H+
Sbjct: 695 LDEIGRGTSTFDGLALAWAIARHLIEKTRCHTLFATHYFELTRLTQEFRQITNVHL---- 750
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ + +VFL+ + G +SYGLQVA +AGVP V++AA
Sbjct: 751 -----DALEHRDHIVFLHSVQEGPASQSYGLQVAALAGVPAPVIQAA 792
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 169/391 (43%), Gaps = 56/391 (14%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK- 322
PE L + + +QY +K+++ D+LL +++G FYEL+ DAE + LD +T G
Sbjct: 4 PEDLSRHTPMMQQYLRIKAEHPDMLLLYRMGDFYELFFEDAEKAAQLLDITLTTRGATAG 63
Query: 323 --CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
+ G+ + + KL+ G V EQ+ +K + RK++ ++TP T
Sbjct: 64 QPIKMAGVPYHAAEQYLAKLIKLGMTVAICEQIGDPATSK-----GPVERKVMRIITPGT 118
Query: 381 TVDGTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
D + + LLA+ G + G A+++ A+ R V I D +L A
Sbjct: 119 LTDAALLDEKQDKLLLALVPGKN-------ILGLAWLNLASGRFSVAEIRPD----SLDA 167
Query: 439 LLMQVSPKEVI----YENRGLCKEAQKALRK------FSAGSAALELTPAMAVTDF--LD 486
L ++ P E++ Y + L E K +R+ F SA L A D
Sbjct: 168 TLERLKPAEILLPENYVHTAL--ENLKCVRRTLPPWQFDYDSALQRLCRQFATLDLQGFG 225
Query: 487 ASEVKKLVQLNG-YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNG 543
+++ ++ G + S AL ++ + + L+ +R L + + LR G
Sbjct: 226 CNDLHCAIEAAGALLEYAKSTQCGALPHIRGLQVERENIYVLLDAAARRNLEISETLR-G 284
Query: 544 DILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
+ P TLY LD+ S G RLLR W+ HPL+D + R D + L+
Sbjct: 285 EPAP-------------TLYSLLDTTAGSMGSRLLRHWLHHPLRDRAELRARFDAIARLI 331
Query: 602 KNS--EVVMVVAQYLRKLPDLERLLGRVKAR 630
S Q L+++ D+ER+ R+ R
Sbjct: 332 GESGAPAYAQTHQGLKQIADIERITARIALR 362
>gi|353237288|emb|CCA69264.1| related to DNA mismatch repair protein [Piriformospora indica DSM
11827]
Length = 1071
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 173/321 (53%), Gaps = 39/321 (12%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
+ ++ ++ D L S A+ A+ P + +D+ ++K + HP
Sbjct: 766 DAVNKLAVADALASLALVATEDG-----------YTKPQIVEDDELEIVKGR---HPLIE 811
Query: 803 GENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM 862
+ VPNDI LG ++ + ++TGPNMGGKS+ R T L VI+AQ GC+VP E
Sbjct: 812 AISSAPFVPNDIALGRRTNLAM----VITGPNMGGKSSCTRLTALLVIMAQSGCWVPAEH 867
Query: 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922
+ L D + TR+GA+D I G STF+VE +ETA ++Q AT+ SLVILDELGRGT+T+DG
Sbjct: 868 ARIPLHDAVLTRMGASDEIQRGRSTFMVEMSETAEIIQSATERSLVILDELGRGTATWDG 927
Query: 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS-HPH-VTLQHMACAFKSNSENYSKGD 980
AIA AV +V I C+ LF THY + E + +P V HM E + G
Sbjct: 928 VAIATAVLDHMVSVIRCKTLFITHYPQIGVELSQKYPGLVANAHMGYL----EEELADGR 983
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEF 1040
+E+ FLYRL G +S+G++ +AG+P+ V+ AS KS+E
Sbjct: 984 REIHFLYRLQDGVADKSFGVECGRLAGLPEVVLAQASR-------------KSAEWEERE 1030
Query: 1041 SSLHEEWLKTIVNVSRVDCNS 1061
SLH T+ +++RV +S
Sbjct: 1031 RSLH--LRSTLKDIARVSTSS 1049
Score = 73.2 bits (178), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 153/379 (40%), Gaps = 39/379 (10%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
Q +K + LL F+VG Y + DA I K L + + + I
Sbjct: 207 QVKQLKEENPGTLLLFEVGYKYRFFGEDARIASKALGIACFMDRNFLTGSIPVYRKMIH- 265
Query: 336 AVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPD----- 389
+KL++ G++VG + Q ET+ KA S R++ + T +T VD D
Sbjct: 266 -TKKLLSLGHRVGIVGQTETAALKKAGDNRSGPFRRQVTELYTATTFVDEMESLDENDLF 324
Query: 390 --AVHLLAIKE---GNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
LL + E G GPD+ V +G V + V +D A L L +
Sbjct: 325 NTGAALLCLAESLMGGMGPDD-RVGFGLVSVIPSTGEVVYDQFSDVAMRTELETRLAHIK 383
Query: 445 PKEVIYENRGLCKEAQKALRKFS-AGSAALE-LTPAMAVTDFLDASEVKKLVQLNGYFNG 502
P E++ GL +K L+ ++ +GSA +E + A+ TD + L+ FN
Sbjct: 384 PCELLLPATGLSSHTEKMLKHYAGSGSARIERIEDALHYTDAFE--------YLHQPFND 435
Query: 503 S---SSPWSKALENVMQH------DIGFSALGGLISHLSR---LMLDDVLRNGDILPYKV 550
P AL + ++H F ++R L+ + L N +I ++
Sbjct: 436 VLDLPKPVVVALAHAVRHLRAYGLSNAFRKTTFFCPFMTRSHMLLNANTLTNLEI--FQN 493
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV- 609
D R +D T G RLLR WI PL + + R VE ++ +V
Sbjct: 494 QTDYSRKGSLIWRVDHTKTKFGSRLLRQWISKPLVNKRLLEERFQAVEDILNTQSAALVK 553
Query: 610 VAQYLRKLPDLERLLGRVK 628
+ L+ LPDL + L R++
Sbjct: 554 LRTVLKGLPDLTKGLSRIQ 572
>gi|310801343|gb|EFQ36236.1| MutS domain V [Glomerella graminicola M1.001]
Length = 922
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 25/321 (7%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ + A+ +S V+ ++ VL V S++ ++H P + P + +
Sbjct: 563 TQSSLVSEVVGVAASYSPVLERLA--GVLAHLDVIISLAHCSVHAP---SEYVRPKIHKR 617
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G + +K HP ++ + ND+ L D L ++TGPNMGGKST +R
Sbjct: 618 GEGQTI-LKEARHPCLEMQDDVQFITNDVALTRDKSSFL----IITGPNMGGKSTYIRQI 672
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 673 GVIALMAQIGCFVPCTEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAE 732
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT HP V H+
Sbjct: 733 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTALADEHPQVHNLHV 792
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+ +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 793 TAHIGGDGGG-KNSKREVTLLYKVDDGVCDQSFGIHVAELVRFPDKVVRMAKRKA----- 846
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
++ +F+S HE+
Sbjct: 847 ---------DELEDFTSKHED 858
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 22/158 (13%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T +G RLL W+ PL + E I R +VE + ++E+ + ++LR +PDL R
Sbjct: 319 LNHCKTPAGSRLLSQWLKQPLMNKEEIEKRQQLVEAFVNDTELRQTMQEEHLRSVPDLYR 378
Query: 623 LLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK--GLRIAMDLLMLMHKEGHIIPS 680
L R + GK L+ V+ + +++ G ++ +M E + P
Sbjct: 379 LAKRFQR-------------GKANLEDVVRAYQVVIRLPGFLGTLEGVM---DEAYRDP- 421
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
L + P+ SD L K E +D D D NH+
Sbjct: 422 LDVAYTTPLRGLSDSLAKLSEMVETTVDLDALD--NHE 457
>gi|409351336|ref|ZP_11234098.1| DNA mismatch repair protein mutS [Lactobacillus equicursoris CIP
110162]
gi|407876814|emb|CCK86156.1| DNA mismatch repair protein mutS [Lactobacillus equicursoris CIP
110162]
Length = 857
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 179/317 (56%), Gaps = 40/317 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + H+ L+AE+ S +E LF + + E I ++ +DVL +FA A
Sbjct: 496 PELKEHENLILEAESKSTELEHDLFAKLRDRIKEHIPELQKLGRQLAALDVLVAFAEDAE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDS 820
+ RP A +Q+ + IK HP A+ E G +PND+ + ED+
Sbjct: 556 EKNYC--RPTF-------AKKQE-----IDIKNGRHPVVEAVLEAGSY-IPNDLTMDEDT 600
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
L+TGPNM GKST +R L I+AQ+G FVP E L + D IFTR+GA D
Sbjct: 601 S-----IYLITGPNMSGKSTYMRQMALIAIMAQVGSFVPAEAATLPIFDQIFTRIGAADD 655
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940
+ +G+STF+VE +E LQ+A+ SL++ DE+GRGT+T+DG A+A A+ + L +++ +
Sbjct: 656 LYSGKSTFMVEMSEANDALQRASSRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAK 715
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
LFATHYH LT+ + PH+ H+ ++ + +L+FL+++ G +SYG+
Sbjct: 716 TLFATHYHELTELEQTLPHLKNIHVGA---------TQENGKLIFLHKILPGPADQSYGI 766
Query: 1001 QVAVMAGVPQKVVEAAS 1017
VA +AG+P++V+ AS
Sbjct: 767 HVAKLAGLPREVLREAS 783
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 165/379 (43%), Gaps = 46/379 (12%)
Query: 262 IPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG 321
+P EA M +QY+ +KS+Y D LF++VG FYELYE DA G + L+ +T
Sbjct: 1 MPKEATTPM---MQQYYQIKSEYPDAFLFYRVGDFYELYEDDAIKGAQILELTLTHRSNK 57
Query: 322 KCRQV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTP 378
+ G+ +D + LV +GYKV EQLE ++AK ++ R ++ +VTP
Sbjct: 58 SANPIPMAGVPHMAVDSYINTLVEKGYKVAICEQLEDPKKAKG-----MVKRGIIQLVTP 112
Query: 379 STTVDGTIGPD----AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
T + GPD + +L ++ G G YG A+ D + V+ T+ +
Sbjct: 113 GTKM--AQGPDEGQESNYLTSVAGGRGG-------YGLAYSDLSTGEVFATTVPNFEEVV 163
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD-----ASE 489
L+ + KEV++ E + + S EL A +++ E
Sbjct: 164 ---NELLSLRTKEVVFAGEMPADERETLEKANITISQPAELAGQHAEISYVEQLLSSPLE 220
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
K QL Y + L+ +++G +L M + V RN ++
Sbjct: 221 KKATRQLVVYLLSTQKRSLAHLQVAESYEVG--------QYLQ--MSNTVQRNLELTQSA 270
Query: 550 VYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+ G + LD T+ G RLL+ W+ PL E I R ++V+ L+ N
Sbjct: 271 T---TGKKQGSLFWVLDKTHTAMGGRLLKQWLSRPLLSKEKILARQEMVQALIDNYFTRE 327
Query: 609 VVAQYLRKLPDLERLLGRV 627
V L+ + DLERL GR+
Sbjct: 328 NVVDALKGVYDLERLSGRI 346
>gi|336388191|gb|EGO29335.1| hypothetical protein SERLADRAFT_433333 [Serpula lacrymans var.
lacrymans S7.9]
Length = 904
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 173/312 (55%), Gaps = 20/312 (6%)
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVI----HAISCIDVLRSFAVTASMSSGAM 768
DYQ + TD + T S L++ + A+ ++ V+ H I+ +DV+ SFA + +
Sbjct: 523 DYQ--ETTDTYSRTQSGLVKEVVNIAATYTPVLEALDHVIAHLDVILSFAHVSVNAPEPY 580
Query: 769 HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTL 828
+P++L + G L +K HP ++ +PND+ + +D +
Sbjct: 581 VKPVML----------EKGTGNLILKEARHPCLEVQDDISFIPNDVEMIKDESEFQ---- 626
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
++TGPNMGGKST +R + ++AQ GCFVPC + + D++ R+GA D + G STF
Sbjct: 627 IITGPNMGGKSTYIRQVGVIALMAQTGCFVPCSEAHVPIFDSVLCRVGAGDSQLKGVSTF 686
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+ E ETA++L+ AT+DSL+I+DELGRGTST+DG+ +A+A+ + +I LFATH+H
Sbjct: 687 MAEMLETATILKSATKDSLIIIDELGRGTSTYDGFGLAWAISEHIASQIRAFCLFATHFH 746
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT HV H+ + + +Q++ LY++ G +S+G+ VA +A
Sbjct: 747 ELTALDQELSHVKNLHVVAHVTQGDDEVASLNQDITLLYKVEPGVSDQSFGIHVAKLANF 806
Query: 1009 PQKVVEAASHAA 1020
P+ VV+ A A
Sbjct: 807 PENVVKLAKRKA 818
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 110/276 (39%), Gaps = 50/276 (18%)
Query: 393 LLAIKEGNCGPDNGSV-VYGFAFVDCAALRVWVGTI--NDDASCAALGALLMQVSPKEVI 449
++AIK + D G AF D + ++ V ND S + +L++Q+S KE +
Sbjct: 88 VMAIKIVSASADKTKTKTVGIAFADTSIRQLGVADFVDNDLFSNTEIKSLIIQLSVKEAL 147
Query: 450 YENRGLCKEAQKA--LRKFSA-----GSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ L K A G E P+ ++ +K LVQ G
Sbjct: 148 IPTGTASGNTDRDIDLNKLKAVLERCGVVITEKKPSEFTAKNIEDDLMKLLVQDPGSSAT 207
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV------LRNGDILPYKVYRDCLR 556
+P + + + + SAL L+++LS L+ D +R D+ Y +R
Sbjct: 208 VGNPQTISQ---LSLPVAPSALSALVNYLS-LLTDPSNHGAFSIRTHDLSQY------MR 257
Query: 557 MDGQTL-----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
+D L L+ C T+ G RLL SW+ PL ++ I R
Sbjct: 258 LDASALRALNLTEPPGSAGSINRNATLLGLLNKCKTAQGTRLLGSWLKQPLVNLHEIQKR 317
Query: 594 LDVVEYLMKNSEVVMVVA-QYLRKLPDLERLLGRVK 628
++VE + +S + +L+ +PD+ R+ R K
Sbjct: 318 QNLVEMFVDDSSTRRNLQDDFLKFMPDMHRISKRFK 353
>gi|295397556|ref|ZP_06807636.1| DNA mismatch repair protein MutS [Aerococcus viridans ATCC 11563]
gi|294974196|gb|EFG49943.1| DNA mismatch repair protein MutS [Aerococcus viridans ATCC 11563]
Length = 868
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 174/320 (54%), Gaps = 38/320 (11%)
Query: 748 ISCIDVLRSFAVTASMSSGAM------HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA 801
++ IDVL+S A + R L L +S++P V +G+
Sbjct: 551 VATIDVLQSLAEISETHQYVKPQFMTDKRDLYLKESRHPVV-----------EGV----- 594
Query: 802 LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
+G+N VPNDI++ D L++TGPNM GKST +R L VILAQ+G FVP +
Sbjct: 595 IGQNRF--VPNDIVM-----DPETSILMITGPNMSGKSTYMRQLGLIVILAQMGSFVPAK 647
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
L + D IFTR+GA D ++ G+STF+VE E LQ AT +SL++ DELGRGTST+D
Sbjct: 648 EARLPIFDKIFTRIGAADDLLAGQSTFMVEMMEANQALQHATDNSLLLFDELGRGTSTYD 707
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + + + ++LF+THYH LT S P + H+ S+ D
Sbjct: 708 GIALAQAILVYIHDHFDAKVLFSTHYHELTALDESLPRLANIHVGA---------SEEDG 758
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
ELVFL+++ +GA +SYG+ VA +AG+P ++++ A ++ + +Q S F
Sbjct: 759 ELVFLHKVFNGATDKSYGIHVAKLAGMPGELLQNAQMVLQELEANNLNEVNKDQQLSLFD 818
Query: 1042 SLHEEWLKTIVNVSRVDCNS 1061
+ EE K V+ VD S
Sbjct: 819 VVQEETSKKPVDNRPVDTPS 838
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 156/377 (41%), Gaps = 49/377 (12%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K + +QY +K QY D LFF++G FYE++ DA + L+ ITL+ K + I
Sbjct: 6 KQTPMMEQYNEMKGQYPDAFLFFRLGDFYEMFNDDALKAAQILE--ITLTSRNKNAEDPI 63
Query: 329 SESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI + ++ LV++GYKV EQLE + T ++ R +V V+TP T ++
Sbjct: 64 PMCGIPYHSASEYIKTLVSQGYKVAIAEQLE-----DPKLTKGMVKRGVVKVLTPGTYMN 118
Query: 384 GTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTIND-DASCAALGAL- 439
+IG I E N D + Y AF D + V T++D +A L
Sbjct: 119 DSIG--------IVENNYLSALDYVNGQYILAFSDVGTGELKVTTLDDFNAVLTEFAQLQ 170
Query: 440 -----LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLV 494
+ Q PK+ + E + L + A + + D D E+ L+
Sbjct: 171 SKELVVSQSVPKDQVEELQHLQSFTLSPFELTAETRAKTRESYKQILADISDDQELNGLL 230
Query: 495 QLNGYFNGSSSP----WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
L Y N S W A + H + S L L + +R
Sbjct: 231 LLLTYVNSMSHQAIDHWQAATHYEVAHYLHMDYYAK-----SNLELTESVRTKK------ 279
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
R +L+ T+ G RLL++W+ PL + I R +E L+++ + +
Sbjct: 280 -----RQGSLLAFLNKTETAMGFRLLKNWLDRPLISLPAIERRQAQIEDLIEHYFQRLEI 334
Query: 611 AQYLRKLPDLERLLGRV 627
L + DLERL+ +V
Sbjct: 335 KDLLHGVYDLERLVAKV 351
>gi|170589733|ref|XP_001899628.1| MutS domain III family protein [Brugia malayi]
gi|158593841|gb|EDP32436.1| MutS domain III family protein [Brugia malayi]
Length = 877
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 159/283 (56%), Gaps = 23/283 (8%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
AS + E+ A++ ID L + ++ AS S RP IL + K VL++K
Sbjct: 569 ASTFCELSGAVATIDTLVALSILASRSPSGYVRPQILDEDKQ----------VLELKKCR 618
Query: 798 HPFALGENGGLP--VPNDILLG-EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQL 854
HP + N P + ND++LG E D + L+LTG NMGGKST LR ++V+LAQ+
Sbjct: 619 HP-VMEANPNSPQFISNDVILGSEQGGDAM--FLMLTGANMGGKSTYLRCCAISVLLAQM 675
Query: 855 GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELG 914
G FVPCE SL D I TR+G+ D G STF+ E + AS+L+ AT SLVI+DELG
Sbjct: 676 GSFVPCESARFSLIDGIHTRIGSCDYQCKGVSTFMAEMNDCASILESATCHSLVIVDELG 735
Query: 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSE 974
RGTST+DG+ +A+A+ +V R+ C ++ATHYH L +P C E
Sbjct: 736 RGTSTYDGFGLAWAIAEDIVSRVKCFCIYATHYHDLAGLSRVYPKQL--KSVCTASQVDE 793
Query: 975 NYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
N +L+ LY++ G S+GL + M G+P+ V++ AS
Sbjct: 794 N-----GQLILLYKIIPGVAGRSFGLNIGKMVGLPENVLQTAS 831
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 555 LRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA- 611
L D +LY L+ C T G+RLLR WI PL D+ IN RLDVVE + N ++
Sbjct: 299 LMNDVGSLYDLLNKCRTPQGQRLLRDWIRRPLHDIRKINERLDVVEAFVNNFSCRTILHD 358
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
LR++PD+ + I L+ KK Q+ +V+ L+ +L +
Sbjct: 359 DILRRIPDI--------------TIITRKLVQKKAGLQECYRLYQVVRLLKRFHQVLDEL 404
Query: 672 HKE-GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAID 708
H G + PS++ + P+ +KF+ E +D
Sbjct: 405 HASCGPLAPSVNDLCLEPLALAQLQFEKFMALIENTVD 442
>gi|397904383|ref|ZP_10505299.1| DNA mismatch repair protein MutS [Caloramator australicus RC3]
gi|397162603|emb|CCJ32633.1| DNA mismatch repair protein MutS [Caloramator australicus RC3]
Length = 858
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 179/320 (55%), Gaps = 38/320 (11%)
Query: 732 ELFIE-------KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
ELF++ + + ++ ++ IDVL SFA + + P+ N + +
Sbjct: 520 ELFVDVRNKVYSQVERIKKIAQYLAIIDVLLSFARVS------FENNYVKPEITNDGIIE 573
Query: 785 --DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
D PV++ K + PF VPND +L D+ +++TGPNM GKST L
Sbjct: 574 IIDGRHPVVE-KVISSPF---------VPNDTIL----DNKENMIIIITGPNMAGKSTYL 619
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L +L+Q+GCFVP + +S+ D IFTR+GA+D + G+STF+VE TE +++L+ A
Sbjct: 620 RQVALITLLSQVGCFVPAKKAKISIVDRIFTRIGASDDLSLGQSTFMVEMTEVSNILKNA 679
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SL+ILDE+GRGTST+DG +IA++V + + I + LFATHYH LT+ L
Sbjct: 680 TKNSLIILDEVGRGTSTYDGLSIAWSVIEYINKSIGAKTLFATHYHELTE---------L 730
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
+ K+ + + +++FL ++ G +SYG+QVA +AG+P +V++ A
Sbjct: 731 EGKIKGVKNYCISVKEHGDDIIFLRKIVRGGADQSYGIQVAKLAGLPDEVIKKAKEILAK 790
Query: 1023 MKKSIGESFKSSEQRSEFSS 1042
++++ K E E ++
Sbjct: 791 LEENDINKIKKDEVIKEVAT 810
Score = 109 bits (273), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 171/373 (45%), Gaps = 42/373 (11%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
++ +QY +K Q+ D +LFF++G FYE++ DAEI +EL+ +T G +
Sbjct: 3 LTPMMQQYLEIKEQHKDCILFFRLGDFYEMFFEDAEIASRELEIALTGRDCGLDKRAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI 386
G+ + + KL+ +GYKV EQ+E + AK ++ R++ ++TP T ++G++
Sbjct: 63 GVPYHSAESYIAKLIEKGYKVAICEQVEDPKLAKG-----IVKREITRIITPGTIIEGSM 117
Query: 387 GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDD--------ASCAALGA 438
+ + I C ++ S + G A D + +V + +++ + A
Sbjct: 118 LNEKANNYII----CIYNSTSKL-GLAICDVSTGDFFVTSFDNEKNKLIDELSKYAPSEL 172
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNG 498
L+++ P I E + K L + D LD + K NG
Sbjct: 173 LIIEEKPNSTINEQLEIIKGRYNC------------LISQIEKYDNLDILDKFKTDNFNG 220
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLIS----HLSRLMLDDVLRNGDILPYKVYRDC 554
S++ K L + + S+LG + S ++S M+ D ++ + R
Sbjct: 221 EEIISAATLLKYLTDTQK-----SSLGHITSIKKYNISDFMILDSFTRKNLELTETLRTR 275
Query: 555 LRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
+ LD +T+ G RLLR WI PL +++ IN RL+ VE + N + + ++L
Sbjct: 276 SKKGTLIDVLDKTLTAMGGRLLRKWIEEPLMNIKEINKRLEAVEEFIDNIYISSDLREFL 335
Query: 615 RKLPDLERLLGRV 627
R + D+ER+L ++
Sbjct: 336 RNIYDIERILSKI 348
>gi|393235788|gb|EJD43340.1| DNA mismatch repair protein [Auricularia delicata TFB-10046 SS5]
Length = 967
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 167/288 (57%), Gaps = 19/288 (6%)
Query: 730 LIELFIEKASQWSEVIHA----ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L++ +E A+ ++EV+ A I+ +DV+ SFA A + A +P +L +
Sbjct: 605 LVKEIVEVAASYTEVLLALDDVIATMDVILSFAHVAMTAPTAYVKPTVL----------E 654
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G +++K HP ++ +PND+ + + ++TGPNMGGKST +R
Sbjct: 655 MGTGNVQLKEARHPCMEVQDEISFIPNDVEMIR----GVSEFQIITGPNMGGKSTYIRQI 710
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+G FVPCE + + D+I R+GA D + G STF+ E ETA++L+ ATQ+
Sbjct: 711 GVIALMAQVGSFVPCESATVPIFDSILARVGAGDSQLKGVSTFMAEMLETATILKSATQN 770
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SLVI+DELGRGTST+DG+ +A+A+ + +I LFATH+H LT PHV H+
Sbjct: 771 SLVIIDELGRGTSTYDGFGLAWAISEHIASQIRAFCLFATHFHELTALDHQLPHVKNLHV 830
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
A + SK D+++ LY++ G C +S+G+ VA +A P+ V+
Sbjct: 831 -VAHVAPRGTESKHDRDITLLYKVQPGICDQSFGIHVAELANFPESVL 877
>gi|354474732|ref|XP_003499584.1| PREDICTED: DNA mismatch repair protein Msh2 [Cricetulus griseus]
Length = 934
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 161/285 (56%), Gaps = 25/285 (8%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +D + SFA ++ + RP+IL + K V +K H ++
Sbjct: 599 LAQLDAVVSFAHVSNAAPVPYVRPVILEKGKGRIV----------LKASRHACVEIQDEV 648
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+PND+ +D ++TGPNMGGKST +R T + V++AQ+GCFVPCE +S+
Sbjct: 649 AFIPNDVCFEKDKQ----MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSI 704
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D I R+GA D + G STF+ E ETA++L+ AT+DSL+I+DELGRGTST+DG+ +A+
Sbjct: 705 LDCILARVGAGDSQLKGVSTFMAEMLETAAILRSATKDSLIIIDELGRGTSTYDGFGLAW 764
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ + +I +FATH+H LT + P V H+ ++ L LY
Sbjct: 765 AISEYIATKIGAFCMFATHFHELTALASQIPTVNNLHVTAL---------TSEETLTMLY 815
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGES 1030
++ G C +S+G+ VA +A P+ VVE A AL ++ +SIG S
Sbjct: 816 QVKKGVCDQSFGIHVAELANFPRHVVECARQKALELEEFQSIGTS 860
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 135/338 (39%), Gaps = 50/338 (14%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRHVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSS-SPWSKALENVMQHDIGFS 522
G L DF K + Q LN G + A+ M++ + S
Sbjct: 216 VIQRGGI---LITERKRADF----STKDICQDLNRLLKGKKGEQMNSAVLPEMENQVAVS 268
Query: 523 ALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD-------------------GQTL- 562
+L +I L L D ++ + +R +R+D Q+L
Sbjct: 269 SLSAVIKFLELLSDDSNFGQFELTTFD-FRQYMRLDMAAVRALNLFQGSVEDTTGSQSLA 327
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDL 620
L+ C T+ G+RL+ WI PL D I RL++VE +++SE+ + + LR+ PDL
Sbjct: 328 ALLNKCKTAQGQRLVNQWIKQPLMDKNRIEERLNLVETFVEDSELRQTLQEDLLRRFPDL 387
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPS 680
RL + + QA++ L L Q V S+++ L+ +G
Sbjct: 388 NRLAKKFQR--QAAN-----LQDCYRLYQGVNQLPSVIQALK---------KYQGRHQAL 431
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
L +F P+ D KF E +D D +NH+
Sbjct: 432 LMAVFVTPLIDLRSDFSKFQEMIETTLDMD--QVENHE 467
>gi|344255402|gb|EGW11506.1| DNA mismatch repair protein Msh3 [Cricetulus griseus]
Length = 851
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 165/308 (53%), Gaps = 23/308 (7%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + ++ ++ +D + S A A G RP + Q +
Sbjct: 520 VLDCSAEWLDFL-ENFGEHYHTLCKAVNHLATVDCIFSLAKVAK--QGNYCRPTL--QEE 574
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ P++ + LGE VPN L +DS+ R +++TGPNMGGK
Sbjct: 575 KKIVIKNGRHPMIDV-------LLGEQDQF-VPNSTSLSQDSE----RVMIITGPNMGGK 622
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 623 SSYIKQVALIAIMAQIGSYVPAEEATIGIVDAIFTRMGAADNIYKGRSTFMEELTDTAEI 682
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + +P
Sbjct: 683 IRKATPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKCYP 742
Query: 959 -HVTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
V HM + G+ E V FLY++T G SYGL VA +A VP ++
Sbjct: 743 EQVGNYHMGFLVDEDESKQESGNMEQVPDSVTFLYQITRGIASRSYGLNVAKLADVPGEI 802
Query: 1013 VEAASHAA 1020
++ A+H +
Sbjct: 803 LKKAAHKS 810
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 146/343 (42%), Gaps = 70/343 (20%)
Query: 337 VEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----DA 390
V +LVA+GYKVG ++Q+ET+ +A + +SV SRKL + T ST + + P D+
Sbjct: 14 VRRLVAKGYKVGVVKQMETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNPLIRLDDS 73
Query: 391 V------------HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAA 435
V +LL I KE + G++ G V A V D AS
Sbjct: 74 VNIDEVMTETSTSYLLCIYEEKENSKDKKKGNISIGIVGVQPATGEVVYDCFQDSASRLE 133
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS-------------AALELTPAM-AV 481
L + + P E++ + L + + + + +A S E + A AV
Sbjct: 134 LETRISSLQPVELLLPSH-LSELTEMLIHRATAVSIRDDRIRVERMDNTYFEYSHAFQAV 192
Query: 482 TDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL- 540
T+F +++V G N S + N+ + I +L +I +L L+ +L
Sbjct: 193 TEFY----AREVVDSKGSQNFS------GIINLEKPVI--CSLAAIIRYLKEFNLEKILS 240
Query: 541 RNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWI 580
+ + + +R++G TL LD TS G+R L+ W+
Sbjct: 241 KPENFKQLSSGMEFMRINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWV 300
Query: 581 CHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
PL + IN RLD + + L S V + +LRKLPD+ER
Sbjct: 301 TQPLLKLRDINARLDAISDVLHSESSVFEQIENHLRKLPDIER 343
>gi|212218392|ref|YP_002305179.1| DNA mismatch repair protein MutS [Coxiella burnetii CbuK_Q154]
gi|212012654|gb|ACJ20034.1| DNA mismatch repair protein [Coxiella burnetii CbuK_Q154]
Length = 871
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 159/287 (55%), Gaps = 28/287 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ IEK + AI+ +DVL + A A + N Q P
Sbjct: 551 LLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNAPQFCDYP 596
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++KI+ HP +PND L E R L++TGPNMGGKST +R T L
Sbjct: 597 IIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYMRQTALIT 651
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L AT++SLV+
Sbjct: 652 LLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVL 711
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++AYA L ++ LFATHY LT ++ P V H+
Sbjct: 712 MDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKNVHLDAV- 770
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ +++++FL+ L G +SYGLQVA +AG+P+ V++ A
Sbjct: 771 --------EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHA 809
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 34 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 93
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 94 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 148
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 149 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 197
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 198 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 248
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 249 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 299
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 300 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 358
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 359 ENLRHIGDLERIVARIALR 377
>gi|395242006|ref|ZP_10419006.1| DNA mismatch repair protein mutS [Lactobacillus pasteurii CRBIP
24.76]
gi|394480754|emb|CCI85246.1| DNA mismatch repair protein mutS [Lactobacillus pasteurii CRBIP
24.76]
Length = 867
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 177/310 (57%), Gaps = 25/310 (8%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHAISCI-DVLRSFAVTASMSSGAM 768
P+ + H+ L+A+T S +E +F++ + + I A+ + + L + V A +S A
Sbjct: 496 PELKEHENLILEAQTKSTDLEHDIFVKLRDEIKQYIPALQNLGNQLAALDVYAGFASVAE 555
Query: 769 HRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRT 827
P +N RQ +KI HP G +PN++++ +++D
Sbjct: 556 ENNYCRPSFQNED-RQ------IKIVAGRHPVVEKVLPAGSYIPNNLVMDDETD-----V 603
Query: 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGEST 887
L+TGPNM GKST +R L VI+AQ+GCFVP + L + D +FTR+GA D +++G+ST
Sbjct: 604 YLITGPNMSGKSTYMRQFALIVIMAQIGCFVPADQASLPIFDQVFTRIGAADDLISGQST 663
Query: 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947
F+VE +E LQ AT SL++ DE+GRGT+T+DG A+A A+ + L +++ + LFATHY
Sbjct: 664 FMVEMSEANDALQHATDHSLILFDEIGRGTATYDGMALAGAIVKYLHDKVGAKTLFATHY 723
Query: 948 HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAG 1007
H LT L+H K+ S+ + +L+FL+++ GA +SYG+ VA +AG
Sbjct: 724 HELT---------GLEHSLAHLKNIHVGASEENGKLIFLHKILPGAADQSYGIHVAKLAG 774
Query: 1008 VPQKVVEAAS 1017
+P V+ A+
Sbjct: 775 LPSAVLREAN 784
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 158/369 (42%), Gaps = 49/369 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY+ +K QY D LF++VG FYEL+E DA G + L+ +T G+
Sbjct: 11 EQYYEIKQQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKSENPIPMAGVPHH 70
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV--DGTIGPD 389
+D V LV +GYKV EQLE +A+ ++ R +V +VTP T + D + D
Sbjct: 71 AVDSYVNTLVEKGYKVAICEQLEDPRKAQG-----MVKRGIVQLVTPGTMMNGDPSESRD 125
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+L ++ + G +G ++ D + V+ + + L+ + KEV+
Sbjct: 126 FNYLTSVVIRDKG-------FGLSYSDLSTGEVYATHLK---KFTDVTNELLSLRTKEVV 175
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTP-----------AMAVTDFLDASEVKKLVQLNG 498
+ GL E +K + A E P +T+ L+ + K+LV
Sbjct: 176 LD--GLLGEQEKEFFQ-KANIVISEPIPLEGQHAEISYVGQNLTNNLEIAATKQLVI--- 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ +++ L + ++N L + +M
Sbjct: 230 YLLSTQKRSLAHLQIAKSYEVS-----------QYLQMSHTVQNNLELIASA-KTGKKMG 277
Query: 559 GQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLP 618
+D T+ G RLL+ WI PL + + I+ R ++V+ L+ N + L+ +
Sbjct: 278 SLFWVIDHTHTAMGGRLLKQWIARPLINHDEIHYRQEMVQALLDNYFTRENIIDALKGVY 337
Query: 619 DLERLLGRV 627
DLERL GR+
Sbjct: 338 DLERLTGRI 346
>gi|357632984|ref|ZP_09130862.1| DNA mismatch repair protein MutS [Desulfovibrio sp. FW1012B]
gi|357581538|gb|EHJ46871.1| DNA mismatch repair protein MutS [Desulfovibrio sp. FW1012B]
Length = 880
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/258 (44%), Positives = 152/258 (58%), Gaps = 21/258 (8%)
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLT 831
++ + P +RQD G + I+ HP G G +PNDI S D R LL+T
Sbjct: 563 VIGEWTRPELRQDLG---ITIRAGRHPVIEAAQGIGNYIPNDI-----SVDDAARLLLIT 614
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNM GKST+LR T L ILAQ+G FVP V+ L D +F R+GA+D + G+STF+VE
Sbjct: 615 GPNMAGKSTVLRQTALIAILAQIGSFVPATQAVIGLVDRVFCRVGASDNLARGQSTFMVE 674
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER---INCRLLFATHYH 948
ETA +L++A + SLVILDE+GRGT+TFDG A+A+AV L R R LFATHYH
Sbjct: 675 MMETARILRQAGKRSLVILDEIGRGTATFDGLALAWAVVEDLAGREGGQGVRTLFATHYH 734
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT P L++ A K KGD ++FL RL G SYG++VA +AGV
Sbjct: 735 ELTALEGRLP--GLRNFNIAVKE-----WKGD--IIFLRRLLPGPADRSYGVEVARLAGV 785
Query: 1009 PQKVVEAASHAALAMKKS 1026
P+ VV+ A +++S
Sbjct: 786 PRNVVKRARELLETLERS 803
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 162/386 (41%), Gaps = 60/386 (15%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV--- 326
M+ +QY VK ++ LL +++G FYE++ DAE +EL +T G V
Sbjct: 1 MTPMLEQYLRVKGEHPGALLLYRMGDFYEMFFEDAETAARELQITLTSRNPGAEAPVPMC 60
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGT 385
G+ ++ + +L+ +G+KV +Q+E + AK ++ R + V+TP T V +G
Sbjct: 61 GVPHHAVEGYIAQLLEKGFKVAVCDQIEDPKLAK-----GLVKRAVTRVLTPGTAVEEGN 115
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+ + LA + G G A+VD + W G + DA A L +++ P
Sbjct: 116 LRAKEHNFLAALFFDADERAG----GLAWVDFSTGE-WSGLFSRDA--ARLWQWTVKIGP 168
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
+E+ L + + + F + P DF A K+++
Sbjct: 169 REL------LLPDGLEPPKDFPKEGVQISRFPPRPHFDF--AGGRDKVLK---------- 210
Query: 506 PWSKALENVMQHDIG-----FSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL----- 555
++A+ ++ D+G A+G L+++L+ + ++ P + R L
Sbjct: 211 --AQAVADLAALDLGDKPQLVRAMGALLTYLAATQMRELGHLSPFRPVNLGRTMLLDEVT 268
Query: 556 --------RMDG----QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
R+DG TL+ LD +T G RLL S + P D+ I V L
Sbjct: 269 EKNLEIFRRLDGGKGVGTLWHVLDKTMTPMGGRLLESRLRQPWLDLGPILETQAAVASLA 328
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L + DLERL R+
Sbjct: 329 ADEGRRTGLREALAGVYDLERLTTRI 354
>gi|302661996|ref|XP_003022658.1| hypothetical protein TRV_03218 [Trichophyton verrucosum HKI 0517]
gi|291186616|gb|EFE42040.1| hypothetical protein TRV_03218 [Trichophyton verrucosum HKI 0517]
Length = 1117
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 168/324 (51%), Gaps = 23/324 (7%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
DA L +L ++ K + + I A++ ID L S +V A+ P P
Sbjct: 797 DAAFLKLLSDIST-KYQLFRDCIQALATIDALHSLSVIAAQ-----------PGYVKPTY 844
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
D ++ I HP VPND L D R LL+TGPNMGGKS+ +
Sbjct: 845 TDDT---IINISQGRHPMVEKVLIDSYVPNDTQLSTDET----RALLVTGPNMGGKSSYV 897
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L I+ Q+G +VP E L + D ++TR+GA D ++ GESTF+VE +ETA +L++A
Sbjct: 898 RQIALICIMGQIGSYVPAESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADILKQA 957
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLVILDELGRGTST DG AIA AV +V + LF THY L++ ++ P L
Sbjct: 958 TPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRNLRSLTLFITHYQNLSRLASAFPGGEL 1017
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
+++ F + ++ Q++ FLY + G SYGL VA +A +P ++E A +
Sbjct: 1018 RNVHMKFTESGDH----GQDITFLYEIGEGVAHRSYGLNVAKLANIPAGILEVAQVKSQE 1073
Query: 1023 MKKSIGESFKSSEQRSEFSSLHEE 1046
++ I R F +L +E
Sbjct: 1074 LEAKISRKKMGGVLRGIFQTLSDE 1097
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 164/413 (39%), Gaps = 78/413 (18%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K++ ++Q +K++++D +L +VG Y+ Y D H + + +
Sbjct: 231 KLTPMERQIMEIKNKHLDAVLLIQVGYKYQFY--DPSEAH-----------LTRFASASV 277
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVD---- 383
+ V++LVA GYKVG ++QLET+ +A + N+ RKL N+ T +T ++
Sbjct: 278 PIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMYTKATYIEDDAE 337
Query: 384 ----GTIGPDAVHLLAIKE-GNCGPDNGS-VVYGFAFVDCAALRVWVGTINDDASCAALG 437
G + P +LL + E G G +G V G V A V + D + +
Sbjct: 338 LELSGALEPSTGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIYDSFEDGFMRSEIE 397
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ-- 495
L+ ++P E++ L K ++ S G +T F D+ +++ Q
Sbjct: 398 TRLLHIAPCELLLIG-DLSAATNKLVQHLSKGR----------MTTFGDSVRIERREQSK 446
Query: 496 ---------LNGYFNG----SSSPWSKALENVMQHDIGFS-----ALGGLISHLSRLMLD 537
++ ++ G + SP N++ + L +I HL+ L+
Sbjct: 447 TAAAEAHSHISSFYAGKMAATGSPEDANASNLLDQVLKLPDDVTICLSAMIKHLTEYGLE 506
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTLY--------------------LDSCVTSSGKRLLR 577
V R + ++G TL ++ T G+RLLR
Sbjct: 507 HVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKGSLFWSMNRTRTKFGQRLLR 566
Query: 578 SWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV---AQYLRKLPDLERLLGRV 627
W+ PL D + R + V L+ + + + A + DLE+ L RV
Sbjct: 567 RWVGRPLLDKVKLEERTEAVTELLDSDKSTLTYNLGATLSQVRVDLEKALIRV 619
>gi|389747671|gb|EIM88849.1| DNA mismatch repair protein Msh6 [Stereum hirsutum FP-91666 SS1]
Length = 1195
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 161/310 (51%), Gaps = 21/310 (6%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F + W I ++ +D L S A SS AM P+ P+ + +G
Sbjct: 856 LFEEFDKDRGVWLRAIRVLAELDCLFSLA----KSSQAMGEPVCRPE-----FVETDGEA 906
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM-GGKSTLLRATCLA 848
+ L HP G +PND+ LG + + R LLTG + GGKST++R T
Sbjct: 907 WVDFVELRHPALAVRTKGDFIPNDVKLGGE----VGRIALLTGELIFGGKSTVMRMTATG 962
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
VI+AQLG +VP + LS D+I TR+GA D + + STF VE E +L+ AT SLV
Sbjct: 963 VIMAQLGMYVPAQKARLSPVDSILTRMGAYDNMFSNASTFKVELDECCKILRDATPRSLV 1022
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
ILDELGRGTST+DG AIA AV QL FATHY LT +FA HP++ HM
Sbjct: 1023 ILDELGRGTSTYDGMAIAGAVLHQLATHTLALTFFATHYGSLTDDFAYHPNIRNMHMETM 1082
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
N E +ELVFLY+L G S+G VA +AGVP +VV+ A + +
Sbjct: 1083 V--NEEK-----RELVFLYKLIDGIASSSFGTHVANLAGVPLEVVQRAEVVSKDFARQFK 1135
Query: 1029 ESFKSSEQRS 1038
E ++S
Sbjct: 1136 EKVDGKRKKS 1145
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 158/538 (29%), Positives = 244/538 (45%), Gaps = 98/538 (18%)
Query: 237 LDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKF 296
LDP D ++ P YD RTLYIP K+ S + Q+W +K + D +LFF+ GKF
Sbjct: 230 LDPM---DKDQVHPGQKGYDPRTLYIPKSVWKEFSPFETQFWEIKQNHYDTVLFFQKGKF 286
Query: 297 YELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLET- 355
ELYE DA IGH+E D K+T K VG+ E + K +A+GYKVGR++Q+ET
Sbjct: 287 LELYEEDARIGHREFDLKLTQR--VKMSMVGVPEMSFNFWAAKFLAKGYKVGRVDQVETA 344
Query: 356 --------SEQAKARHT--NSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGP 403
S+++K + T ++ R+L V T T VD + D A H ++I+E + P
Sbjct: 345 LGAEMRLASDKSKGKKTAGEKIVRRELNKVYTNGTLVDEELLTDEQAGHCVSIRESD--P 402
Query: 404 DN----------GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
D+ G +G +D A + DD L L+ Q+ KE+++
Sbjct: 403 DDFPGASTGSAGGGGAFGICVLDSATSEFNLCAFEDDVCRTRLETLMRQLRVKEIVFTKG 462
Query: 454 GLCKEAQKALRK-----------------FSAGSAALELT----PAMAVTDFLDASEVKK 492
L E + L+ F + EL P+ A +D +E +
Sbjct: 463 NLSVETTRLLKSLLPATCLWTSLRDKKEGFDYETTIEELKQLYPPSEAGSDSQTQNE-ES 521
Query: 493 LVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVL--RNGDILPYK 549
+++ P KA+ ++++ +LG +I +L +L +D D+L RN ++
Sbjct: 522 MIEDEAMEGMEGVP--KAIRDMLKCKSAVESLGSMIWYLRQLNIDKDILTMRNFNVYDPM 579
Query: 550 VYRDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
L +DGQTL L CVT GKRL R W+C PL++++ I
Sbjct: 580 KRGQGLVLDGQTLAHIEVLVNNEGTEEGSLLELLGRCVTPFGKRLFRIWLCMPLREIKDI 639
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQ 650
N RLD +E LM++ + + LPDLER++ +R+ A +C V + KVL
Sbjct: 640 NARLDAIEDLMRDLSFEEQFVKVAKGLPDLERIV----SRIHAKNCKVKDFL--KVL--- 690
Query: 651 VKVFGSLVKGLRIAMD---------LLMLMHKEGHIIPSLSRI---FKPPIFDGSDGL 696
F L +GL D +L L+ + P + + FK P D +D L
Sbjct: 691 -SAFRRLSEGLAELADASESFNSKTILGLLRSAPDLEPHIKNVQSKFKRPDKDNTDEL 747
>gi|395825567|ref|XP_003785999.1| PREDICTED: DNA mismatch repair protein Msh3 [Otolemur garnettii]
Length = 1126
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 163/311 (52%), Gaps = 29/311 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F + + H ++ +D + S A A G RP + + K
Sbjct: 789 VLDCSAEWLDFL-EKFSDHYHSLCKATHHLATVDCIFSLAKVAK--QGDYCRPTVQEEKK 845
Query: 779 NPAVRQDNGGPVLKIKGLWHP---FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
+ IK HP LGE VPN L ++S+ R +++TGPNM
Sbjct: 846 ------------ILIKNGRHPVIDMLLGEQDQY-VPNGTSLSDNSE----RVMIITGPNM 888
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKS+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+T
Sbjct: 889 GGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDT 948
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A ++++AT SLVILDELGRGTST DG AIAYA + + LF THY P+ +
Sbjct: 949 AEIIRRATSQSLVILDELGRGTSTHDGIAIAYATLEYFITDVKSLTLFVTHYPPVCELEK 1008
Query: 956 SHP-HVTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVP 1009
S+P V HM + G +E V FLY++T G SYGL VA +A VP
Sbjct: 1009 SYPQQVGNYHMGFLVSEDESEQDPGKEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVP 1068
Query: 1010 QKVVEAASHAA 1020
++++ A+H +
Sbjct: 1069 GEILQKAAHKS 1079
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 172/399 (43%), Gaps = 58/399 (14%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
QY +K Q+ D +L + G Y + DAEI +EL+ L I +
Sbjct: 224 QYIELKQQHKDAILCVECGYKYRFFGEDAEIAARELNIYCHLD--HNFMTASIPTHRLFV 281
Query: 336 AVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTIGP-----D 389
V +LVA+GYKVG ++Q ET+ +A + +S+ SRKL + T ST + + P D
Sbjct: 282 HVRRLVAKGYKVGVVKQTETAALKAIGDNKSSLFSRKLTALYTKSTLIGEDVNPLIKLDD 341
Query: 390 AV------------HLLAI---KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCA 434
AV +LL I KE G++ G V A V + D AS +
Sbjct: 342 AVNVDEIVTDTSTGYLLCICENKENVKDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRS 401
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA-------------LELTPAM-A 480
L + + P E++ + L ++ + + + +A S E + A A
Sbjct: 402 ELETRISCLQPVELLLPS-ALSEQTETLIHRATAVSVRDDRIRVERMDNVYFEYSHAFQA 460
Query: 481 VTDFL--DASEVKKLVQLNGYFN---------GSSSPWSKA--LENVMQHDIGFSALGGL 527
V +F D ++K ++G N S + K LE V+ F L
Sbjct: 461 VMEFYAKDVVDIKGSQSISGIINLTKPVICSLASLIRYLKEFNLEKVLSKPENFKQLSSE 520
Query: 528 ISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKD 586
++ + LRN +IL + ++ G L+ LD T+ G+R L+SW+ PL
Sbjct: 521 KEFMT--INGTTLRNLEILQNQT---DMKTRGSLLWVLDHTKTAFGRRKLKSWVTQPLLK 575
Query: 587 VEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLERLL 624
+ IN RLD V E L S V + +LRKLPD+ER L
Sbjct: 576 LREINARLDAVSEVLHSESGVFGQIENHLRKLPDIERGL 614
>gi|300814716|ref|ZP_07094966.1| MutS domain V protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511189|gb|EFK38439.1| MutS domain V protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 430
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 169/297 (56%), Gaps = 30/297 (10%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L ++ LS L +E ++ + IS IDVL S + + ++ RPL+
Sbjct: 93 LQSKILSELKNFLLENIIKFQNLSKIISAIDVLVSLSEVSRRNN--YKRPLL-------- 142
Query: 782 VRQDNGGPVLKIKGLWHPFALGEN--GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
N ++ IK HP + EN L VPND L D D L ++TGPNM GKS
Sbjct: 143 ----NKEGLIDIKKGRHPI-VEENYKDELFVPNDTYL--DLDKNLIH--IITGPNMAGKS 193
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T +R L I+A +G FVPCE +S+ D IFTR+GA+D + G+STF+VE E A+++
Sbjct: 194 TYMRQVALITIMAHIGSFVPCEYANISVLDRIFTRIGASDNLAMGQSTFMVEMKEVANII 253
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
A+++SL+ILDE+GRGTST+DG +IAYA+ + + + LFATHYH L +P
Sbjct: 254 DNASKNSLLILDEVGRGTSTYDGLSIAYAILEYIATNLKAKTLFATHYHELCSLEEKYPS 313
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ +++ A K K +++++FL ++ +G SYG+ VA +AG+ +++ A
Sbjct: 314 IS--NLSIAVK-------KEEEDIIFLRKIINGPSNHSYGIDVAKLAGIDDFIIKRA 361
>gi|334312805|ref|XP_001382178.2| PREDICTED: DNA mismatch repair protein Msh2 [Monodelphis domestica]
Length = 934
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 158/278 (56%), Gaps = 23/278 (8%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +D + SFA A+ + RP+IL + G + +KG H ++
Sbjct: 599 LAQLDAVVSFANVANGAPIPYVRPVIL----------EKGQGRIILKGSRHACVEVQDEV 648
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+PNDI ++ ++TGPNMGGKST +R T + V++AQ+GCFVPCE +S+
Sbjct: 649 AFIPNDINFEKNKQTFH----IITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSI 704
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D I R+GA D M G STF+ E ETAS+L+ AT+DSL+I+DELGRGTST+DG+ +A+
Sbjct: 705 VDCILARVGAGDCQMKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAW 764
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ + +I +FATH+H LT P V H++ D+ L LY
Sbjct: 765 AISEYIATKIGAFCMFATHFHELTALADQLPTVNNLHVSAL---------TTDEALTMLY 815
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ G C +S+G+ VA +A P+ V+E A AL +++
Sbjct: 816 QVKKGVCDQSFGIHVAELANFPKHVIENAKQKALELEE 853
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 132/337 (39%), Gaps = 48/337 (14%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G + G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRLVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSAL 524
G L DF V+ L +L G + A+ M++ + S+L
Sbjct: 216 VIERGGI---LITERKKVDFAAKDIVQDLNRLLKSKKGDQ--VNSAVLPEMENQVAISSL 270
Query: 525 GGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG-------------------QTL--Y 563
+I +L L D ++ + + + +++D Q+L
Sbjct: 271 SAVIKYLELLSDDSNFGQFELTTFDLSQ-YMKLDNAAVRALNLFQGSAEDKSGTQSLAAL 329
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G+RLL WI PL D I RL++VE + ++E+ + + LR+ PDL R
Sbjct: 330 LNKCKTPQGQRLLNQWIKQPLLDKNRIEERLNLVEAFVVDAELRQSLQEDLLRRFPDLHR 389
Query: 623 LLGRVKAR-VQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSL 681
+ + C + + + Q V +L K H+ H + L
Sbjct: 390 FAKKFQRHAANLQDCYRM----YQAINQLPNVIQALEK------------HEGKHQMLLL 433
Query: 682 SRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
+ IF P+ D KF E +D + +NH+
Sbjct: 434 A-IFVTPLTDLHSDFSKFQEMIETTLDMN--QVENHE 467
>gi|407921660|gb|EKG14801.1| hypothetical protein MPH_08076 [Macrophomina phaseolina MS6]
Length = 1135
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Query: 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLAD 869
VPND L S PR LL+TGPNMGGKS+ +R L I+AQ+G +VP L + D
Sbjct: 905 VPNDTHLSSTSSSGTPRALLITGPNMGGKSSFVRQVALICIMAQVGSYVPASSATLGMLD 964
Query: 870 TIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929
+ TR+GA D +M GESTF+VE +ETA +L++AT SLVILDELGRGTST DG AIA+AV
Sbjct: 965 AVLTRMGAFDNMMAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIAHAV 1024
Query: 930 FRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS-----ENYSKGDQELV 984
+V + LF THY L + + P L+++ F+ N +E+
Sbjct: 1025 LDYVVRDLRALTLFITHYQNLARLADAFPDGALRNVHMRFEEKEGGGAGRNKKGVGEEIT 1084
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
FLY + G SYGL VA +A VP V+E A+
Sbjct: 1085 FLYEVGEGVAHRSYGLNVARLANVPDAVLEVAA 1117
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 167/430 (38%), Gaps = 82/430 (19%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ ++Q ++K + D +L +VG + + DA + KEL D ++
Sbjct: 242 KLTPMERQIIDLKQSHPDTILVVEVGYKFRFFGEDARVAAKELGIVCIPGKFRFDEHLSE 301
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKA-RHTNSVISRKLVNVV 376
+ + + + V++LVA G+KVG + QLET+ KA + N+ RKL N+
Sbjct: 302 AHLDRFAGASFPTHRLHVHVKRLVAAGHKVGVVRQLETAALKKAGDNRNAPFVRKLTNLY 361
Query: 377 TPSTTVDGTIG------------PDAVHLLAIKEGNC---GPDNGSVVYGFAFVDCAALR 421
T +T +D G P ++L + E N G D V G V A
Sbjct: 362 TKATYIDDVEGLEGAGANASSNSPATGYILCLTESNAKGWGTDE-KVHIGVVAVQPATGD 420
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSA------GSAA--- 472
+ D + + L+ ++P E + + K +K + S G A
Sbjct: 421 IIYDDFEDGFMRSEIETRLLHIAPSEFLIVG-DVSKATEKIVHHLSGSKRNVFGDQARVE 479
Query: 473 -LELTPAMAVTDFLDASEVKKLVQLNGYFN--GSSSPWSKALENVMQHDIGFSA-----L 524
+E MA + S N Y + S+ S++ V+ S L
Sbjct: 480 RVEKPKTMAAQAYSHIS--------NFYADKMKSADEHSESAATVLDKVHALSEHVTICL 531
Query: 525 GGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YL 564
LI+H++ L+ V R + ++G TL +
Sbjct: 532 SALITHMTEYGLEHVFDLTKNFQAFSARSHMMLNGNTLSSLEIYQNQTDHTVKGSLFWTM 591
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
D T G+RLLR W+ PL + E + R+ VE L +VV+ L L+RLL
Sbjct: 592 DRTKTRFGQRLLRKWVGRPLLNKEKLEERIGAVEELRNGDKVVV--------LEKLKRLL 643
Query: 625 GRVKARVQAS 634
+VK ++ S
Sbjct: 644 SQVKTDLEKS 653
>gi|71748512|ref|XP_823311.1| DNA mismatch repair protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832979|gb|EAN78483.1| DNA mismatch repair protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 951
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 172/312 (55%), Gaps = 17/312 (5%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLI-LPQSKNPAVRQDNG--GPVLKIKGLWHPFALGE 804
++ +DV ++A+ SS M RP + PQS+ DN G +L I HP
Sbjct: 616 LAALDVFAAWALVVKDSSRPMVRPTVRAPQSEEVKGNVDNNSNGAILTIVNARHPLVELR 675
Query: 805 NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
PN + L +++ L++TGPNMGGKST +R+ + V LAQ GCFVP +
Sbjct: 676 QPAF-TPNTVQLTNEAN-----ALIITGPNMGGKSTFMRSIGVCVALAQAGCFVPADSAD 729
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
+ + D I R+GATD + G STF+VE E+A++L ATQ +L I+DELGRGTST+DG+
Sbjct: 730 IVVRDAIMCRVGATDHLAQGVSTFMVEMLESAAMLNSATQQTLAIVDELGRGTSTYDGFG 789
Query: 925 IAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+A+A+ +++ LLF+TH+H +T+ A H +V H + + L
Sbjct: 790 LAWAIAQEVAVNAKSALLFSTHFHEMTQLAARHTNVRNVHFGA-------DVDTAARTLR 842
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
F Y+L G C SYGL VA +A +P V+++A A+ ++ G+ K+ Q + FS+
Sbjct: 843 FSYQLQPGPCGRSYGLYVAQLAHIPDDVLDSARQKAVELEDFGGDETKNRAQ-ALFSTAT 901
Query: 1045 EEWLKTIVNVSR 1056
E ++ + ++
Sbjct: 902 PEVVQRVTEYAK 913
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 18/148 (12%)
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV--MVVAQYLRKLPDL 620
+L+ C T G RL++ W+ PL+ +E IN RL +V+ +M S ++ ++ Q LR+ D+
Sbjct: 348 WLNRCTTGMGSRLMQQWLLQPLRSIEDINQRLSLVQ-IMVESPILRDALITQVLRRCTDM 406
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPS 680
+RL +++ R A + Q + VF + V +A+D+L H GH
Sbjct: 407 DRLNRKLQRRTVALKDL-----------QSILVFANTVP---LAVDVLRTYHG-GHDSSL 451
Query: 681 LSRIFKPPIFDGSDGLDKFLTQFEAAID 708
L + + P+ D S+ L T A +D
Sbjct: 452 LLKGYVTPLEDISEHLSNLRTLINATVD 479
>gi|449440909|ref|XP_004138226.1| PREDICTED: DNA mismatch repair protein MSH2-like [Cucumis sativus]
gi|449477104|ref|XP_004154930.1| PREDICTED: DNA mismatch repair protein MSH2-like [Cucumis sativus]
Length = 938
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 173/326 (53%), Gaps = 29/326 (8%)
Query: 730 LIELFIEKASQWSEVIHAI----SCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L+ IE AS ++EV + S +DVL FA AS RP +
Sbjct: 574 LVHRVIETASSFNEVFRPLAELLSELDVLLGFADLASSCPTPYTRP---------DITSS 624
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
N G ++ ++G HP ++ +PND L ++TGPNMGGKST +R
Sbjct: 625 NEGNII-LEGSRHPCVEAQDWVNFIPNDCKLVRGK----SWFQIITGPNMGGKSTFIRQV 679
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ +++AQ+GCFVPC+ +S+ D IF R+GA D + G STF+ E ETAS+L+ AT+
Sbjct: 680 GVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEK 739
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL--- 962
SL+I+DELGRGTST+DG+ +A+A+ LVE I LFATH+H LT +H + L
Sbjct: 740 SLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTA--LAHGNTDLDSH 797
Query: 963 --QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
Q A S + + +L LY++ GAC +S+G+ VA A P VV A A
Sbjct: 798 GKQMAGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANFPSSVVALAREKA 857
Query: 1021 LAMK----KSIGESFKSSEQRSEFSS 1042
++ + + E++ EFSS
Sbjct: 858 AELEDFSIDTTASTTNGKERKREFSS 883
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 9/102 (8%)
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL-- 623
+C GKRLL W+ PL DV+ I++RLD+V+ ++++ + + Q+L+++ D+ERL
Sbjct: 326 TCTAGMGKRLLHMWLKQPLLDVKEISSRLDLVQAFVEDTALCQDLRQHLKRISDIERLTH 385
Query: 624 -LGRVKARVQ-----ASSCIVLPLIGKKVLKQQVKVFGSLVK 659
L + +A +Q S I LP I K L+ F SL+K
Sbjct: 386 YLEKRRAGLQHIVKLYQSSIRLPFI-KNALENYEGQFSSLIK 426
>gi|448683846|ref|ZP_21692466.1| DNA mismatch repair protein MutS [Haloarcula japonica DSM 6131]
gi|445783419|gb|EMA34248.1| DNA mismatch repair protein MutS [Haloarcula japonica DSM 6131]
Length = 919
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 17/302 (5%)
Query: 713 DYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPL 772
D + DV L+ + E F E ++ +E A DV R+ A + +S A+H
Sbjct: 514 DEKERDVLRLEERRHDMEYERFQELRARVAE--RATLLQDVGRTLAELDAFASLAVH--A 569
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTG 832
+ PAV + N L I+ HP E VPND+ + +D + L++TG
Sbjct: 570 VENDWTRPAVAEGN---ELSIEAGRHPVV--EQTTEFVPNDLYMDDDR-----QFLIVTG 619
Query: 833 PNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVEC 892
PNM GKST +R L +LAQ+G FVP + L D IFTR+GA D + G STF+VE
Sbjct: 620 PNMSGKSTYMRQAALITLLAQVGSFVPARSATVGLVDGIFTRVGALDELAQGRSTFMVEM 679
Query: 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952
E +++L AT++SLVILDE+GRGT+TFDG +IA+A +V I + LFATHYH LT
Sbjct: 680 QELSNILHSATEESLVILDEVGRGTATFDGISIAWAATEYIVNSIQSKTLFATHYHELTA 739
Query: 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKV 1012
P V H+A + S ++GD ++ FL + G SYG+ VA +AGVP+ V
Sbjct: 740 LGEELPTVENVHVAVDGEPRS---AEGDGDVTFLRTVRDGPTDRSYGVHVADLAGVPEPV 796
Query: 1013 VE 1014
V+
Sbjct: 797 VD 798
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 101/433 (23%), Positives = 165/433 (38%), Gaps = 72/433 (16%)
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITL--SGVGKCRQVGISESGIDDAVEKLVARGY 345
LL + G FYE + DAEI ELD K++ S G+ + V LV RGY
Sbjct: 22 LLAMQCGDFYEFFAEDAEIVADELDLKVSQKSSHGSSYPMAGVPVDDLTPYVSALVERGY 81
Query: 346 KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDN 405
+V +Q ET E A R++ VVTP T ++ G ++ LA D
Sbjct: 82 RVAIADQHET-ENGHA--------REITRVVTPGTHLE--TGDESAQYLAAVVRETSRDG 130
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
G YG A D + V ++D + AL L +P E++ L + + R
Sbjct: 131 GD-TYGIAATDVTTGQFQVTQLDDADTGEALTELYT-FAPAEIL-PGPELRNDDEFLDRL 187
Query: 466 FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALG 525
AAL L + + + V++ GS + S + + D+ A G
Sbjct: 188 RDRTDAALTLHDSASFEPGRASHTVREQF-------GSETVDSVGIGD---QDVALRAAG 237
Query: 526 GLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQT-----------------LY--LDS 566
++S++ + + + Y RD + +D T L+ +D
Sbjct: 238 AVLSYVEDTGVGTLAAVTRLQAYG-ERDHVDLDATTQRNLELTETMQGDSSGSLFDTIDH 296
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
VT++G RLL+ W+ P ++ + R V L + + + + L DLERL R
Sbjct: 297 TVTAAGGRLLQQWLQRPRRNRAELRRRQSCVAALSEAAMARERIRETLSDAYDLERLAAR 356
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSL-VKGLRIAMDLLMLMHKEGHIIPSLSRIF 685
+ GS + LR + L L+ + + R+
Sbjct: 357 ATS-------------------------GSADARDLRAVQETLSLLGQVADAVTETERLA 391
Query: 686 KPPIFDGSDGLDK 698
+ P+ D DG D+
Sbjct: 392 ESPLADALDGADR 404
>gi|91775187|ref|YP_544943.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|91775331|ref|YP_545087.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|123452014|sp|Q1H2P1.1|MUTS_METFK RecName: Full=DNA mismatch repair protein MutS
gi|91709174|gb|ABE49102.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|91709318|gb|ABE49246.1| DNA mismatch repair protein MutS [Methylobacillus flagellatus KT]
gi|167042436|gb|ABZ07162.1| putative MutS domain V [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 884
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 161/288 (55%), Gaps = 33/288 (11%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ--DNGGPVLKIKGLWH 798
W A++ +DVL +FA A + + PQ + A D PV ++ L
Sbjct: 572 WQRNAEAVAQLDVLATFAERADVLK------YVAPQFSSEAGLDIVDGRHPV--VEQLAQ 623
Query: 799 PFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
PF + N + L + LL+TGPNMGGKST +R T L V+LA GCFV
Sbjct: 624 PF---------IANSVSLSP-----YRQLLLITGPNMGGKSTYMRQTALIVLLAHCGCFV 669
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
P + + D IFTR+GA+D + G STF+VE TETA++L AT+ SLV+LDE+GRGTS
Sbjct: 670 PAKSARIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATERSLVLLDEIGRGTS 729
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
TFDG ++A+AV RQL+E+ LFATHY LT+ H H+ +
Sbjct: 730 TFDGLSLAWAVARQLLEKNRSYTLFATHYFELTRISEEFKHAANVHL--------DAVEH 781
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
GD +VFL+ + G +SYGLQVA +AG+P+ VV AA + +++S
Sbjct: 782 GDG-IVFLHNVEEGPASQSYGLQVAQLAGIPRTVVNAAKRKLVQLEQS 828
Score = 93.2 bits (230), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 169/393 (43%), Gaps = 77/393 (19%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---C 323
L++ + +QY +K+QY D+L+F+++G FYEL+ DAE + L +T G
Sbjct: 38 LEQHTPMMRQYLGIKAQYPDMLVFYRMGDFYELFHDDAEKASRLLGITLTKRGSSNGEPI 97
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
R G+ + + KL G V EQ+ ++K + R++ ++TP T D
Sbjct: 98 RMAGVPYHAAEQYLAKLAKLGEAVAICEQVGDPAKSKG-----PVERQVTRILTPGTLTD 152
Query: 384 GTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ D LLAI G V G A ++ A+ R + I + L L
Sbjct: 153 AALLDDTRDNLLLAIAHGEG-------VLGLARINLASGRFILSEI----TPGLLAQELE 201
Query: 442 QVSPKEVIYEN--------RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
++SP E++Y + + C + + A +F S+ LT + D LD +
Sbjct: 202 RISPAEILYPDDFYHMALEQVKCPKKRLAPWQFDLDSSIQTLTKQFSTYD-LDGFGCAHM 260
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDD----------VLRNG 543
+ ++ + AL + ++H S + H+ LM++ RN
Sbjct: 261 L--------AAIMAAGALLDYVKHTQRTS-----LPHIQSLMVEQGSQFIQLDAATRRNL 307
Query: 544 DILPYKVYRDCLRMDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+I LR + TLY L++ VT+ G RLLRSW+ HPL+ I RL V+ L
Sbjct: 308 EI------DQTLRGESSPTLYSLLNTTVTAMGARLLRSWLHHPLQHQADIQARLQAVKVL 361
Query: 601 MKNSEVVMVVAQY------LRKLPDLERLLGRV 627
AQY LR + D+ER+ RV
Sbjct: 362 Q---------AQYDGLRPLLRNVGDIERMAARV 385
>gi|312072119|ref|XP_003138920.1| MutS domain III family protein [Loa loa]
gi|307765917|gb|EFO25151.1| MutS domain III family protein [Loa loa]
Length = 879
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 165/295 (55%), Gaps = 23/295 (7%)
Query: 728 SILIELFIEK----ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
S I++ +E S + E+ ++ ID L + ++ AS S RP IL + K
Sbjct: 557 SSFIDMVVETCSGYVSTFCELSETVAIIDTLVALSILASGSPFCFVRPQILDEDKQ---- 612
Query: 784 QDNGGPVLKIKGLWHP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
+L+++ HP N + ND++LG + D L+LTG NMGGKST L
Sbjct: 613 ------ILELRKCRHPVMEANPNSSQFICNDVILGREQGDG-AMFLVLTGANMGGKSTYL 665
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L+V+LAQ+G FVPCE SL D I TR+G+ D G STF+ E + AS+L+ A
Sbjct: 666 RCCALSVLLAQIGSFVPCESARFSLIDGIHTRIGSCDYQCKGVSTFMAEMNDCASILESA 725
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T SLVI+DELGRGTST+DG+ +A+A+ +V R+ C ++ATHYH LT+ +P L
Sbjct: 726 TCHSLVIVDELGRGTSTYDGFGLAWAIAEDIVSRVKCFCIYATHYHELTRLSRVYPK-QL 784
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+++ C EN +L+ LY++ G S+GL + M G+P V++ AS
Sbjct: 785 KNV-CTASQIDEN-----GQLILLYKIIPGVAGRSFGLNIGKMIGLPNSVLQTAS 833
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 558 DGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYL 614
D +LY L+ C T G+RLLR WI PL D+ IN RLDVVE L+ NS ++ L
Sbjct: 304 DVGSLYELLNKCRTPQGQRLLRDWIRRPLHDIRKINERLDVVEALVNNSLCRAILHDDIL 363
Query: 615 RKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKE 674
R++PD+ + I L+ KK Q+ +++ L+ +L +H
Sbjct: 364 RRIPDI--------------TTITRKLLQKKAGLQECYRLYQIIRLLKRFHQVLDELHAS 409
Query: 675 -GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAID 708
G + S++ + P+ +KF+ E+ +D
Sbjct: 410 CGSLASSVNDLCLEPLALAQLQFEKFMALIESTVD 444
>gi|162451401|ref|YP_001613768.1| DNA mismatch repair protein [Sorangium cellulosum So ce56]
gi|189083194|sp|A9GIM9.1|MUTS_SORC5 RecName: Full=DNA mismatch repair protein MutS
gi|161161983|emb|CAN93288.1| DNA mismatch repair protein [Sorangium cellulosum So ce56]
Length = 918
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/246 (45%), Positives = 144/246 (58%), Gaps = 23/246 (9%)
Query: 786 NGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
G L I+ HP G VPND L D R L+TGPNM GKSTL+R
Sbjct: 619 TAGEALAIRDGRHPVVERYAAAGHFVPNDTRL----DLSGERLWLITGPNMAGKSTLMRQ 674
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
L V+LAQ+G +VP + L D I +R+GA+D + GESTF+VE ETA +L+ AT+
Sbjct: 675 VALIVVLAQMGSYVPAREAEIGLVDRILSRVGASDNVARGESTFMVEMRETAEILRDATR 734
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
SLVILDE+GRGTST+DG AIA+AV L + I CR LFATHYH LT+ A P +
Sbjct: 735 RSLVILDEIGRGTSTYDGLAIAWAVAEHLFDAIGCRALFATHYHELTELSARAPGIA--- 791
Query: 965 MACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
NYS +E ++FL++L +G SYG+ VA +AGVP+ V+ A + A
Sbjct: 792 ----------NYSVAAREHGDDVIFLHKLEAGPASRSYGVAVARLAGVPEGVL-ARARAI 840
Query: 1021 LAMKKS 1026
LA +S
Sbjct: 841 LATLES 846
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 16/194 (8%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC 323
P A KK++ +QY + K+ + D +LFF++G FYE++ DA + + L+ +T G+
Sbjct: 7 PAARKKLTPVMRQYEDAKALHPDAILFFRMGDFYEMFNDDAVLVSRALNLTLTSRNKGEP 66
Query: 324 RQ---VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPS- 379
+ G+ + +L+A G+KV EQ + K ++ R++V VVTP
Sbjct: 67 DESPMAGVPHHAAHGYIARLLALGHKVAICEQCGDPSKIK-----GLVPRQVVRVVTPGL 121
Query: 380 TTVDGTIGPDAVHLLAIKEGNCGPDNGSV----VYGFAFVDCAALRVWVGTINDDASCAA 435
T + A H LA +G P ++ YG + +D + + ++ D A
Sbjct: 122 VTETEQLDARANHYLAAVDGGGAPRGDALGAGGPYGLSLLDLSTGELSATSVPD---AAT 178
Query: 436 LGALLMQVSPKEVI 449
L A L + P+E +
Sbjct: 179 LLAELARADPREAL 192
>gi|347753700|ref|YP_004861265.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1]
gi|347586218|gb|AEP02485.1| DNA mismatch repair protein MutS [Bacillus coagulans 36D1]
Length = 875
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 169/312 (54%), Gaps = 38/312 (12%)
Query: 712 PDYQNHDVTDLDAE--TLSILIELFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L AE + + ELF E + E I A+S IDVL+SFAV +
Sbjct: 507 PELKEKEALILQAEERMIDLEYELFTEIRAHVKEFIPRLQRLAKAVSTIDVLQSFAVVSE 566
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSD 821
P R+D VLKI HP + VPND L+ E+ +
Sbjct: 567 KR-----------HYTKPVFREDG---VLKITEGRHPVVEKVLDSQSYVPNDCLMDENRE 612
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VILAQ+GCFVP L + D IFTR+GA D +
Sbjct: 613 -----ILLITGPNMSGKSTYMRQIALTVILAQIGCFVPAREAELPVFDRIFTRIGAADDL 667
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + + AT+ SL++ DE+GRGTST+DG A+A A+ + + I +
Sbjct: 668 ISGQSTFMVEMLEAKNAIANATERSLILFDEIGRGTSTYDGMALAQAMIEYIHDEIGAKT 727
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT + H++ A + N ++VFL+++ G +SYG+
Sbjct: 728 LFSTHYHELTALSTELGKLQNVHVS-AMEQNG--------KVVFLHKIKEGPADKSYGIH 778
Query: 1002 VAVMAGVPQKVV 1013
VA +AG+P++V+
Sbjct: 779 VAKLAGLPEQVI 790
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY VK++Y D LFF++G FYE++ DA +EL+ +T G K G+
Sbjct: 20 QQYLQVKAEYQDAFLFFRLGDFYEMFFEDAIKASQELEITLTSRDGGGDEKIPMCGVPYH 79
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG-TIGPDA 390
+E+L+ +GYKV EQ+E + AK V+ R+++ ++TP T ++G ++
Sbjct: 80 SASTYIEQLIDKGYKVAICEQMEDPKLAKG-----VVKREVIQLITPGTLMEGKSLAEKE 134
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
H +A P +G+ + A++D +
Sbjct: 135 NHYIA---SVASPADGN--FAIAYIDLS 157
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD +T+ G RLL+ WI PL E I RL +VE + + + + L+++ DLERL
Sbjct: 294 LDETMTAMGGRLLKQWIGRPLLKQEKIEARLQMVETFLNHYFEREDIRERLKEVYDLERL 353
Query: 624 LGRV 627
GRV
Sbjct: 354 AGRV 357
>gi|345019807|ref|ZP_08783420.1| DNA mismatch repair protein MutS [Ornithinibacillus scapharcae TW25]
Length = 867
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 171/316 (54%), Gaps = 39/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHAI-------SCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF E Q I I S IDVL++FA +
Sbjct: 496 PELKEKEQLILEAEEKSVDLEYTLFTEIREQIKSKIPRIQTLADIVSKIDVLQAFATVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSD 821
++ HRP DN L IK HP + G VPND+ L E
Sbjct: 556 ANN--YHRPSF----------TDNR---LHIKNGRHPVIEKVMDDGTFVPNDVELDEKKS 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L I+ Q+GCFVPC+ L + D IFTR+GA D +
Sbjct: 601 -----MLLITGPNMSGKSTYMRQLALIAIMGQVGCFVPCDEAELMIFDQIFTRIGAADDL 655
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE ET ++ AT SL++LDE+GRGTST+DG A+A A+ + + +
Sbjct: 656 VSGQSTFMVEMLETNHAIEHATNRSLILLDEIGRGTSTYDGMALAQAIVEYIHHNVKAKT 715
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT S P ++ H+ +E Y +VFL+++ GA +SYG+
Sbjct: 716 LFSTHYHELTALEDSLPKLSNVHV------RAEEYEGN---VVFLHQIKEGAADKSYGIH 766
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +A +P+ ++ AS
Sbjct: 767 VAKLASLPENLINRAS 782
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/381 (26%), Positives = 171/381 (44%), Gaps = 55/381 (14%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K + +QY +K+ Y D LFF++G FYE++ DA +EL+ +T G+ ++
Sbjct: 1 MAKYTPMMEQYLTIKADYQDAFLFFRLGDFYEMFFEDAINASRELEITLTKRDAGQDEKI 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ ++ LV +GYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAENYIKNLVEKGYKVAICEQVEDPKTAKG-----VVKREVVQLITPGTVME 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
T+ + E N N + F D + + V++ ++ A + +V
Sbjct: 116 STM---------LNERN----NNYIASVSHFGDGSFVVVYLDLSTGESRIAHV-----EV 157
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-EVKKLVQLNGYF-- 500
S VI+E L + K + S+ L + D L + + V NG +
Sbjct: 158 SFDRVIHE---LYNQPIKEI----VISSNLPEVLQKQLKDRLQITLSYQDEVTFNGEYRD 210
Query: 501 ---NGSSSPWSKALENVMQHDIGFSALGGLISHLSR---LMLDDVL-------RNGDILP 547
N + KA ++ + + F+ L HL R L LD L RN + L
Sbjct: 211 ICENLNDERLVKAFSRLLNY-VQFTQKRSL-DHLKRAEVLELDQYLSLDMYSKRNLE-LT 267
Query: 548 YKVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
+ R+ + G L+ LD VT+ G R+L+ W+ PL D I NRL+ VE
Sbjct: 268 ETILRN--KRHGSLLWVLDKTVTAMGSRMLKKWLERPLLDKVLIENRLEAVEGFYHAFME 325
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+ L+ + DLERL GR+
Sbjct: 326 RDALRDSLKSVYDLERLAGRI 346
>gi|212528164|ref|XP_002144239.1| DNA mismatch repair protein Msh2, putative [Talaromyces marneffei
ATCC 18224]
gi|111380652|gb|ABH09703.1| MSH2-like protein [Talaromyces marneffei]
gi|210073637|gb|EEA27724.1| DNA mismatch repair protein Msh2, putative [Talaromyces marneffei
ATCC 18224]
Length = 944
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 23/302 (7%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L++ + A+ + V+ ++ I DV+ SFA + + A RP + P+
Sbjct: 572 TQSGLVQEVVNVATSYCPVLEQLAGILAHLDVIVSFAHVSVHAPTAYARPKMHPRG---- 627
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILL--GEDSDDCLPRTLLLTGPNMGGKS 839
G +LK HP ++ + ND+ L GE S L++TGPNMGGKS
Sbjct: 628 ----TGNTILK--EARHPCMEMQDDISFITNDVSLVRGESS------FLIITGPNMGGKS 675
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T +R + ++AQ+GCFVPC L++ D I R+GA+D + G STF+ E ET+++L
Sbjct: 676 TYIRQIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNIL 735
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
+ AT +SL+I+DELGRGTST+DG+ +A+A+ +V I C +FATH+H LT +P
Sbjct: 736 KSATSESLIIIDELGRGTSTYDGFGLAWAISEHIVTEIGCFGMFATHFHELTALADRYPK 795
Query: 960 VTLQHMACAFKSNS-ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
AF S++ E S +E+ LYR+ G C +S+G+ VA + P+KVV A
Sbjct: 796 SVKNLHVVAFISDAKEGESNKKREVTLLYRVEPGVCDQSFGIHVAELVRFPEKVVNMARQ 855
Query: 1019 AA 1020
A
Sbjct: 856 KA 857
Score = 46.2 bits (108), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL D I R +VE + ++E+ + ++LR +PDL R
Sbjct: 328 LNHCKTPVGSRLLAQWLKQPLMDQAEIEKRHQLVEAFVVDTELRQTMQEEHLRAIPDLYR 387
Query: 623 LLGRVKARVQAS 634
L R + R QA+
Sbjct: 388 LAKRFQ-RSQAN 398
>gi|26252149|gb|AAH40784.1| Msh3 protein [Mus musculus]
Length = 385
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 164/311 (52%), Gaps = 29/311 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D +AE L L E F E + + ++ +D + S A A G RP + + K
Sbjct: 48 VLDCNAEWLGFL-ENFGEHYHTLCKAVDHLATVDCIFSLAKVAK--QGNYCRPTLQEEKK 104
Query: 779 NPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
+ IK HP LGE VPN L +DS+ R +++TGPNM
Sbjct: 105 ------------IIIKNGRHPMIDVLLGEQDQF-VPNSTSLSQDSE----RVMIITGPNM 147
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKS+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+T
Sbjct: 148 GGKSSYIKQVALVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDT 207
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A ++++A+ SLVILDELGRGTST DG AIAYA + + LF THY P+ +
Sbjct: 208 AEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEK 267
Query: 956 SHP-HVTLQHMACAFKSNSENYSKGDQE-----LVFLYRLTSGACPESYGLQVAVMAGVP 1009
+P V HM + GD E + FLY++T G SYGL VA +A VP
Sbjct: 268 CYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDSVTFLYQITRGIAARSYGLNVAKLADVP 327
Query: 1010 QKVVEAASHAA 1020
++V++ A+H +
Sbjct: 328 REVLQKAAHKS 338
>gi|44888195|sp|Q83CQ2.1|MUTS_COXBU RecName: Full=DNA mismatch repair protein MutS
Length = 859
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 171/318 (53%), Gaps = 28/318 (8%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E L++ IEK + AI+ +DVL + A A + N
Sbjct: 532 EKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNA 577
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
Q P++KI+ HP +PND L E R L++TGPNMGGKST +
Sbjct: 578 PQFCDYPIIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYM 632
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R T L +LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L A
Sbjct: 633 RQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNA 692
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV++DE+GRGTSTFDG ++AYA L ++ LFATHY LT AS TL
Sbjct: 693 TEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTA-LAS----TL 747
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
Q A K+ + + +++++FL+ L G +SYGLQVA +AG+P+ V++ A
Sbjct: 748 Q----AVKNVHLDAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEE 803
Query: 1023 MKKSIGESFKSSEQRSEF 1040
++ + + +Q F
Sbjct: 804 LENPVISETQQPQQNELF 821
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 81
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 82 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 136
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 137 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 185
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 186 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 236
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 237 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 287
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 288 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 346
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 347 ENLRHIGDLERIVARIALR 365
>gi|161831167|ref|YP_001596673.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 331]
gi|189030765|sp|A9NCN3.1|MUTS_COXBR RecName: Full=DNA mismatch repair protein MutS
gi|161763034|gb|ABX78676.1| DNA mismatch repair protein MutS [Coxiella burnetii RSA 331]
Length = 859
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 171/318 (53%), Gaps = 28/318 (8%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E L++ IEK + AI+ +DVL + A A + N
Sbjct: 532 EKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNA 577
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
Q P++KI+ HP +PND L E R L++TGPNMGGKST +
Sbjct: 578 PQFCDYPIIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYM 632
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R T L +LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L A
Sbjct: 633 RQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNA 692
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV++DE+GRGTSTFDG ++AYA L ++ LFATHY LT AS TL
Sbjct: 693 TEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTA-LAS----TL 747
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
Q A K+ + + +++++FL+ L G +SYGLQVA +AG+P+ V++ A
Sbjct: 748 Q----AVKNVHLDAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEE 803
Query: 1023 MKKSIGESFKSSEQRSEF 1040
++ + + +Q F
Sbjct: 804 LENPVISETQQPQQNELF 821
Score = 73.6 bits (179), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 81
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 82 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 136
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 137 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 185
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 186 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 236
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 237 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 287
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 288 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 346
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 347 ENLRHIGDLERIVARIALR 365
>gi|154504380|ref|ZP_02041118.1| hypothetical protein RUMGNA_01884 [Ruminococcus gnavus ATCC 29149]
gi|153795309|gb|EDN77729.1| DNA mismatch repair protein MutS [Ruminococcus gnavus ATCC 29149]
Length = 895
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 193/362 (53%), Gaps = 57/362 (15%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+ +DV S A+ A S+ RP I N V+ IK HP
Sbjct: 564 AIAKVDVFASLALVAERSNYV--RPKI------------NEQGVIDIKDGRHPVVEK--- 606
Query: 807 GLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
+PND+ + D+ DD R ++TGPNM GKST +R L V++AQLG FVP
Sbjct: 607 --MIPNDMFISNDTYLDDKKQRISIITGPNMAGKSTYMRQAALIVLMAQLGSFVPASSAN 664
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
+ L D IFTR+GA+D + +G+STF+VE TE A++L+ AT SL+ILDE+GRGTSTFDG +
Sbjct: 665 IGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLS 724
Query: 925 IAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
IA+AV + + + + LFATHYH LT E H + + A K KGD +
Sbjct: 725 IAWAVVEYISDNKLLGAKTLFATHYHELT-ELEGKIH-NVNNYCIAVK------EKGD-D 775
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVP-------QKVVEAASHAALAMKKSIGESFKSSE 1035
+VFL ++ G +SYG+QVA +AGVP +++VE S + + S S + +
Sbjct: 776 IVFLRKIVKGGADKSYGIQVAKLAGVPDVVITRAKEIVEELSDEDITTRVSEIASREKEQ 835
Query: 1036 QRSEFSSLHEEWLKTIVNVSRVDCNSDDD----------------DAYDTLFCLWHELKN 1079
++ + + ++E + +S D DDD DA +T++ L ++LKN
Sbjct: 836 KKKQKTKKYDEV--DMAQMSLFDTVKDDDVLEELKSIDVGNLTPVDALNTIYRLQNKLKN 893
Query: 1080 SY 1081
+
Sbjct: 894 RW 895
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/412 (23%), Positives = 173/412 (41%), Gaps = 84/412 (20%)
Query: 257 KRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT 316
K+ ++ + + +++ +QY K QY D +LF+++G FYE++ DA +EL+ +T
Sbjct: 3 KKKIHKGEKRVAELTPMMQQYIETKKQYQDCILFYRLGDFYEMFFEDALTASRELEITLT 62
Query: 317 LSGVG---KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLV 373
G K G+ ++ + KLV++GYKV EQ+E +QAK ++ R++V
Sbjct: 63 GKNCGQEEKAPMCGVPYHAVEGYLNKLVSKGYKVAICEQVEDPKQAKG-----IVKREVV 117
Query: 374 NVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVV--------YGFAFVDCAALRVWVG 425
+VTP T +D A+ E N ++ YG + D +V
Sbjct: 118 RIVTPGTNLDTQ---------ALDETK----NNYIMCIVYIADRYGLSIADVTTGDYFVT 164
Query: 426 TINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL 485
+ + A L + + P E+I C E+ + +G +L + +T
Sbjct: 165 ELEESAK---LLDEIYRFMPSEII------CNESY-----YMSGMDLDDLKDRLGIT--- 207
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALEN----------VMQHDIGFSALGGLISHLSR-- 533
+ L+ ++ + K LE+ + +D G + G L+ +L
Sbjct: 208 -------IYSLDSWYFDDAVCRQKLLEHFKVASFAGLGLEDYDCGIISAGALLQYLYETQ 260
Query: 534 ------------------LMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRL 575
+MLD R L + R+ + LD T+ G R+
Sbjct: 261 KNSLAQLTHITAYTTGKYMMLDSSTRRNLELC-ETLREKQKRGSLLWVLDKTKTAMGARM 319
Query: 576 LRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
LR ++ PL + + I RLD VE L + + + +YL + DLERL+ ++
Sbjct: 320 LRKYVEQPLIEKKEILRRLDAVEELKEQAICREEIREYLSPVYDLERLVTKI 371
>gi|282882093|ref|ZP_06290734.1| DNA mismatch repair protein MutS [Peptoniphilus lacrimalis 315-B]
gi|281298123|gb|EFA90578.1| DNA mismatch repair protein MutS [Peptoniphilus lacrimalis 315-B]
Length = 866
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 166/296 (56%), Gaps = 28/296 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L ++ LS L +E ++ + IS IDVL S + + ++ RPL+
Sbjct: 529 LQSKILSELKNFLLENIIKFQNLSKIISAIDVLVSLSEVSRRNN--YKRPLL-------- 578
Query: 782 VRQDNGGPVLKIKGLWHPFA-LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
N ++ IK HP L VPND L D D L ++TGPNM GKST
Sbjct: 579 ----NKEGLIDIKKGRHPIVEKNYKDELFVPNDTYL--DLDKNLIH--IITGPNMAGKST 630
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R L I+A +G FVPCE +S+ D IFTR+GA+D + G+STF+VE E A+++
Sbjct: 631 YMRQVALITIMAHIGSFVPCEYANISVLDRIFTRIGASDNLAMGQSTFMVEMKEVANIID 690
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
A+++SL+ILDE+GRGTST+DG +IAYA+ + + + LFATHYH L +P +
Sbjct: 691 NASKNSLLILDEVGRGTSTYDGLSIAYAILEYIATNLKAKTLFATHYHELCSLEEKYPSI 750
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ +++ A K K +++++FL ++ +G SYG+ VA +AG+ +++ A
Sbjct: 751 S--NLSIAVK-------KEEEDIIFLRKIINGPSNHSYGIDVAKLAGIDDFIIKRA 797
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 166/379 (43%), Gaps = 63/379 (16%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISESG 332
QY + K ++ D +LFF++G FYE++ DA + KEL+ +T G K GI
Sbjct: 12 QYLDTKKKHPDSILFFRLGDFYEMFFDDAILASKELEIALTKRDAGFAQKAPMCGIPYHV 71
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDA 390
+ KL+ +GYKV +Q+E + AK ++ R++ ++TP T D +
Sbjct: 72 AHTYISKLINKGYKVTICDQVEDPKLAKG-----LVKRQVTKIITPGTFTDSDFLKSDEN 126
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGT---INDDASCAALGALLMQVSPKE 447
+L+A+ +Y A+ D + ++ +++++ +++ + ++ P E
Sbjct: 127 NYLMAVYLKKYD------MY-IAYTDFSTGELYYTYRTFLDEESLFSSVRDEIYRIMPSE 179
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS----EVKKLVQLNGYFNGS 503
++ + ++ K L KF L+ +T++ + ++ KLV N G
Sbjct: 180 IL-----VNEDIDKTLNKF--------LSNNFFITNYKNDDIVNIDIGKLVCENLTDLGQ 226
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG--QT 561
+ K L + +I L + ++ L+ + + Y Y++ + + +T
Sbjct: 227 KNFNEKKLSD----NIAIKTLLDYLFKTQKIHLNHI---NNFNHYDYYKNLVLDENSKRT 279
Query: 562 LYLDSCVTSSGK-----------------RLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
L L + ++ K RLL+ W+ PL +++ I +RL+ +E +
Sbjct: 280 LELLKGLNTNNKKGSLLEILDKCKTSMGSRLLKKWLSSPLTNIDRIEDRLNHIEDFNSDL 339
Query: 605 EVVMVVAQYLRKLPDLERL 623
V + L+ + D+ERL
Sbjct: 340 LVTEDIKDRLKNIYDIERL 358
>gi|452981358|gb|EME81118.1| hypothetical protein MYCFIDRAFT_49240, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 929
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 167/306 (54%), Gaps = 25/306 (8%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCI----DVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L+ + A+ + VI ++ + DV+ SFA + + A RP I P+
Sbjct: 559 TQSGLVNEVVNVAASYCPVIEQLAGVLAHLDVIVSFAHVSVHAPAAYVRPKIHPR----- 613
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
G +K HP ++ + ND+ L +S + L ++TGPNMGGKST
Sbjct: 614 -----GTGSTNLKEARHPCLEMQDDVQFITNDVTLARESSEFL----IITGPNMGGKSTY 664
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R + ++AQ+GCFVPC L+L D I R+GA+D + G STF+ E ET+++L+
Sbjct: 665 IRQIGVIALMAQIGCFVPCTEAELTLFDCILARVGASDSQLKGVSTFMAEMLETSNILKT 724
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT++SLVI+DELGRGTST+DG+ +A+A+ +++ I +FATH+H LT ++P V
Sbjct: 725 ATKESLVIIDELGRGTSTYDGFGLAWAISEHIIKEIGAFAMFATHFHELTALVDTYPQVQ 784
Query: 962 LQHMACAFKSNSEN-------YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
H+ +E+ S +E+ LY++ G +S+G+ VA + PQKVV
Sbjct: 785 NLHVVAHISGEAEDTDMTNNGTSTRRREVTLLYKVIPGISDQSFGIHVAELVRFPQKVVN 844
Query: 1015 AASHAA 1020
A A
Sbjct: 845 MAKRKA 850
Score = 46.6 bits (109), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T G RLL W+ PL +E I R +VE + ++E+ + ++LR +PDL R
Sbjct: 315 LNHCKTPVGSRLLAQWLKQPLMSLEEIEKRQQLVEAFVNDTELRQTLQEEHLRSIPDLYR 374
Query: 623 LLGRVKAR 630
L + + +
Sbjct: 375 LAKKFQRK 382
>gi|326202164|ref|ZP_08192034.1| DNA mismatch repair protein MutS [Clostridium papyrosolvens DSM 2782]
gi|325987959|gb|EGD48785.1| DNA mismatch repair protein MutS [Clostridium papyrosolvens DSM 2782]
Length = 873
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 176/318 (55%), Gaps = 37/318 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFI-------EKASQWSEVIHAISCIDVLRSFAVTAS 762
P+ + + L AE +L+E LF+ E+ S+ A++ IDVL S A A
Sbjct: 508 PELKEIEDNILGAEEKIVLLEYSLFVQIKDKIAEQLSRIKSTARALAEIDVLASLAEVAD 567
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
+P I K V D PV++ + + G VPND +L + D
Sbjct: 568 RE--GYCKPEISVSDKIEIV--DGRHPVVE--------KMTDKSGF-VPNDTVLDMEED- 613
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
R ++TGPNM GKST +R + L V++AQ+G FVP + L D IFTR+GA+D +
Sbjct: 614 ---RLAIITGPNMAGKSTYMRQSALIVLMAQIGSFVPASSAKIGLVDRIFTRVGASDDLA 670
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCR 940
+G+STF+VE +E A++L AT+ SL++LDE+GRGTSTFDG +IA+AV +V E++ CR
Sbjct: 671 SGQSTFMVEMSEVANILTNATKRSLLVLDEIGRGTSTFDGLSIAWAVIEYIVSKEQLGCR 730
Query: 941 LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL 1000
LFATHYH LT+ L+ K+ + +++FL ++ G SYG+
Sbjct: 731 TLFATHYHELTE---------LEGKLSGIKNYCITVKEKGDDVIFLRKIIRGGADGSYGI 781
Query: 1001 QVAVMAGVPQKVVEAASH 1018
QVA +AGVPQ V++ A
Sbjct: 782 QVAKLAGVPQGVIDRAKE 799
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 181/393 (46%), Gaps = 82/393 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY ++K QY D +LFF++G FYE++ DAE+ +EL+ +T G + G+
Sbjct: 9 QQYLDIKEQYKDCILFFRLGDFYEMFFSDAELASRELEITLTGRDCGLEERAPMCGVPFH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
++ V +LV++GYKV EQ+E AK ++ R ++ VVTP T D T+ +
Sbjct: 69 AANNYVARLVSKGYKVAICEQVEDPALAKG-----IVKRDVIKVVTPGTVTDITMLDERK 123
Query: 392 --HLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+L++I K GN YG A VD + I + L + + P E+
Sbjct: 124 NNYLMSIYKNGN--------FYGLASVDITTGDFYGTRITWGNTREKLFDEIAKYLPSEI 175
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY---FNGSSS 505
I N LC A ELT E+K+ + N Y F S
Sbjct: 176 IV-NTELC--------------ADNELT-----------CEIKQ--RFNTYVSTFEEGSF 207
Query: 506 PWSKALE-----------NVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVY- 551
+ A++ N+ ++DI +A G L+++L ++ ++N ++ + Y
Sbjct: 208 EYGNAMDTLRNQFENRALNIQEYDIAVNASGALLTYLESTQKVNLSHIQNFNLYALEEYM 267
Query: 552 ------RDCLRM---------DGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLD 595
R L + G L+ LD +TS G RLLR WI PL + I+ RL+
Sbjct: 268 ILDASSRRNLELTETMREKSKKGSLLWVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLN 327
Query: 596 VVEYLMKNSEVVMVVA-QYLRKLPDLERLLGRV 627
VE L KN + V A + L+++ D+ERL+G+V
Sbjct: 328 AVEEL-KNKFMARVEARELLKRVYDIERLMGKV 359
>gi|254796716|ref|YP_003081552.1| DNA mismatch repair protein MutS [Neorickettsia risticii str.
Illinois]
gi|254589940|gb|ACT69302.1| DNA mismatch repair protein MutS [Neorickettsia risticii str.
Illinois]
Length = 815
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 170/316 (53%), Gaps = 34/316 (10%)
Query: 716 NHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILP 775
N + L+ E L E + S E+I A++ +DV+ SFA A+ R + P
Sbjct: 521 NENYRKLELELFRELCEKILASESPLKEMIAAMAELDVIVSFA------EIAVQRKYVRP 574
Query: 776 QSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
Q DN L+I G HPF N VPND+ + C+ LTGPNM
Sbjct: 575 QV-------DNSNE-LRISGGRHPFVEQVNAF--VPNDLAFTSEERVCV-----LTGPNM 619
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GKST LR L +LAQ+G FVP + + + D +F+R+GA+D I G+STF+VE ET
Sbjct: 620 AGKSTYLRQNALITVLAQMGSFVPADSAHIGVVDRVFSRIGASDNIARGKSTFMVEMMET 679
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A+++ AT SLVILDE+GRGTST DG +IA AV L + +NC+ +FATHY+ L +
Sbjct: 680 ANIVNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNELCDLES 739
Query: 956 SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEA 1015
P + K S + E+ +Y++ G +SYG+ A+++G+P+ ++
Sbjct: 740 KLPRM---------KCYSIEVKRWRDEIFLMYKVVPGRGDKSYGIHTAMLSGIPESIIRR 790
Query: 1016 ASHAA----LAMKKSI 1027
A+ A L+M+ S+
Sbjct: 791 ATEIAKEKNLSMESSL 806
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 171/379 (45%), Gaps = 51/379 (13%)
Query: 273 SQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GIS 329
+ K+Y V+ QY D ++F++VG FYE++ DA L +T G K + + G+
Sbjct: 8 AMKRYLEVRCQYPDAVIFYRVGDFYEMFFEDAREVSALLGLHLTRRGTYKGKDIPMCGVP 67
Query: 330 ESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD 389
S + + KLV G KV EQLET+E+AK R +++ R +V +VTP GT+ D
Sbjct: 68 VSSYEVYINKLVKLGRKVAICEQLETAEEAKKRGATAIVRRDVVRLVTP-----GTLTED 122
Query: 390 AVHLLAIKEGN----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+LL E N P + G A++D + ++ + AS A+L + L++ P
Sbjct: 123 --NLLVSGENNYLFCVAPGKNEI--GIAWLDISTKKI----VFTSASPASLESYLVKTEP 174
Query: 446 KEVIY------ENRGLCKEAQKALRK-----FSAGSAALELTPAMAVTD--FLDASEVKK 492
KEV+ E R L ++ + + F A EL V F+DA +
Sbjct: 175 KEVLLPDTIDSELRKLIEQHNIHITRRPNNLFQFEYAENELRGFYNVLQLGFMDARSPCE 234
Query: 493 LV---QLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPY 548
+V L Y + K LE +++ G L LD +R +++
Sbjct: 235 IVACGALIAYARATQMGELKQLEFPKRYERG-----------HYLELDASTVRGLELIES 283
Query: 549 KVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+ + + +D T+ GKRLL+S+I PL VE I R D VE+ E+
Sbjct: 284 QTPGE---KNSLLQVIDQTCTAGGKRLLKSYIVSPLISVEEIQTRQDRVEFFFIQEELRK 340
Query: 609 VVAQYLRKLPDLERLLGRV 627
V L +PD ER L R+
Sbjct: 341 KVRTELSNIPDAERALSRI 359
>gi|449105729|ref|ZP_21742428.1| DNA mismatch repair protein mutS [Treponema denticola ASLM]
gi|451970029|ref|ZP_21923258.1| DNA mismatch repair protein mutS [Treponema denticola US-Trep]
gi|448966703|gb|EMB47350.1| DNA mismatch repair protein mutS [Treponema denticola ASLM]
gi|451701091|gb|EMD55571.1| DNA mismatch repair protein mutS [Treponema denticola US-Trep]
Length = 402
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 160/279 (57%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 73 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNITGGRHPVV--ENHL 117
Query: 806 -GGLPVPNDI--LLGEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE++ D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 118 RAGDFVPNSIELLSGENTNPEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 177
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 178 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 237
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ L+H + + +
Sbjct: 238 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR---------LEHEKII--NLKLDVLEA 286
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 287 EGKIVFLKKVVPGAAGNSYGIHVAGLAGIPQSVLTRAEN 325
>gi|405960469|gb|EKC26394.1| DNA mismatch repair protein Msh2 [Crassostrea gigas]
Length = 915
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 161/288 (55%), Gaps = 28/288 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ +DVL SFAV+A+ + RP +LP+ G +K+ HP +
Sbjct: 582 IAQLDVLVSFAVSATSAPIPFVRPSLLPK----------GSGNIKLIDARHPCLEMQEDI 631
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+PNDI+ +D ++TGPNMGGKST +R+ + V+LAQ+G +VPC +++
Sbjct: 632 SFIPNDIIFEKDKQ----MFHIITGPNMGGKSTYIRSAGVVVLLAQIGSYVPCSEAQVTI 687
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA D + G STF+ E ETAS+L+ AT++SL+I+DELGRGTST+DG+ +A+
Sbjct: 688 VDSILARVGAGDNQVKGISTFMAEMLETASILKSATENSLMIIDELGRGTSTYDGFGLAW 747
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
A+ + +I LFATH+H LT P V H+ A SN L LY
Sbjct: 748 AISEHIATKIKGFCLFATHFHELTTLADKIPTVNNLHV-TALTSND--------TLTLLY 798
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSE 1035
R+ G C +S+G+ VA +A P V+E + A + E F+S E
Sbjct: 799 RVKQGPCDQSFGIHVAELAHFPAHVIEFSKKKAAEL-----EDFQSVE 841
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 32/262 (12%)
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+V +L +K G +N + G F D ++ V D+ + L AL++Q+ KE +
Sbjct: 130 SVGVLGLK---IGTENNERMVGVGFADVMMRKMLVAEFADNDQFSNLEALIVQMGAKECV 186
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
G LR+ S L +DF V+ L +L G +
Sbjct: 187 V---GTGDLHTGKLRQVLERSNIL--ITERKKSDFSSKDVVQDLNRLLKCKKGQQVNSAT 241
Query: 510 ALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------- 562
E M+ I A+ LI +L L +D I + + +++D +
Sbjct: 242 LSE--MEKKIAMEAVSALIKYLELLSNEDYFGQFSIGSFD-FSQYMKLDSAAVQALNLFP 298
Query: 563 -------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
+D C T G+RLL WI PL D+ I R +VE+ +K++E+ +
Sbjct: 299 TSSDGNKNQSILGLMDRCKTVQGQRLLAQWIKQPLMDINRIEERQKLVEFFVKDTELRQL 358
Query: 610 VAQ-YLRKLPDLERLLGRVKAR 630
VA+ +LR+LPD +RL + + R
Sbjct: 359 VAEDHLRRLPDFQRLARKFQQR 380
>gi|302498746|ref|XP_003011370.1| hypothetical protein ARB_02429 [Arthroderma benhamiae CBS 112371]
gi|291174920|gb|EFE30730.1| hypothetical protein ARB_02429 [Arthroderma benhamiae CBS 112371]
Length = 1141
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 160/306 (52%), Gaps = 22/306 (7%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF 800
+ + I A++ ID L S +V A+ P P D ++ I HP
Sbjct: 838 FRDCIQALATIDALHSLSVIAAQ-----------PGYVKPKYTDDT---IINITQGRHPM 883
Query: 801 ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC 860
VPND L D R LL+TGPNMGGKS+ +R L I+ Q+G +VP
Sbjct: 884 VEKVLIDSYVPNDTQLSTDET----RALLITGPNMGGKSSYVRQIALICIMGQIGSYVPA 939
Query: 861 EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920
E L + D ++TR+GA D ++ GESTF+VE +ETA +L++AT SLVILDELGRGTST
Sbjct: 940 ESATLGMLDAVYTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTH 999
Query: 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD 980
DG AIA AV +V + LF THY L++ ++ P L+++ F + ++
Sbjct: 1000 DGVAIAQAVLDYMVRNLRSLTLFITHYQNLSRLASAFPGGELRNVHMKFTESGDH----G 1055
Query: 981 QELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEF 1040
Q++ FLY + G SYGL VA +A +P ++E A + ++ I R F
Sbjct: 1056 QDITFLYEIGEGVAHRSYGLNVAKLANIPAGILEVAQVKSQELEAKISRKKMGGVLRGMF 1115
Query: 1041 SSLHEE 1046
+L +E
Sbjct: 1116 QTLSDE 1121
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 170/424 (40%), Gaps = 76/424 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ ++Q +K++++D +L +VG Y+ Y DA I K L D +
Sbjct: 231 KLTPMERQIMEIKNKHLDAVLLIQVGYKYQFYGEDARIAAKVLSIVCIPGKLRFDEHPSE 290
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + + + V++LVA GYKVG ++QLET+ +A + N+ RKL N+
Sbjct: 291 AHLTRFASASVPIHRLHVHVKRLVAAGYKVGVVKQLETAALKAAGDNRNAPFVRKLTNMY 350
Query: 377 TPSTTVD--------GTIGPDAVHLLAIKE-GNCGPDNGS-VVYGFAFVDCAALRVWVGT 426
T +T ++ G + P +LL + E G G +G V G V A V +
Sbjct: 351 TKATYIEDDAELELSGALEPSTGYLLCLTESGAKGQGDGEKVQIGIVAVQPATGNVIYDS 410
Query: 427 INDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLD 486
D + + L+ ++P E++ L K ++ + G +T F D
Sbjct: 411 FEDGFMRSEIETRLLHIAPCELLLVG-DLSAATNKLVQHLAKGR----------MTTFGD 459
Query: 487 ASEVKKLVQ-----------LNGYFNG----SSSPWSKALENVMQHDIGFS-----ALGG 526
+ +++ + ++ ++ G + SP N++ + L
Sbjct: 460 SVRIERREKSKTAAAEAHSHISSFYAGKMAATGSPEDTNASNLLDQVLKLPDDVTICLSA 519
Query: 527 LISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY--------------------LDS 566
+I HL+ L+ V R + ++G TL ++
Sbjct: 520 MIKHLTEYGLEHVFDLTKYFQSFSARSHMLLNGNTLTNLEIYQNQTDYSSKGSLFWSMNR 579
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV---AQYLRKLPDLERL 623
T G+RLLR W+ PL D + R + V L+ + + + A + DLE+
Sbjct: 580 TRTKFGQRLLRRWVGRPLLDKAKLEERTEAVTELLDSDKSTLTYNLGATLSQVRVDLEKA 639
Query: 624 LGRV 627
L RV
Sbjct: 640 LIRV 643
>gi|34499116|ref|NP_903331.1| DNA mismatch repair protein MutS [Chromobacterium violaceum ATCC
12472]
gi|44888170|sp|Q7NRW7.1|MUTS_CHRVO RecName: Full=DNA mismatch repair protein MutS
gi|34104967|gb|AAQ61323.1| DNA mismatch repair protein [Chromobacterium violaceum ATCC 12472]
Length = 873
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 160/295 (54%), Gaps = 29/295 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L+ + L++ ++ + A++ +DVL +FA A++ G P +P+
Sbjct: 545 LEKQLYEALLDQLAPHIAELKLIAQAVAALDVLSAFAQRAAI--GNYAEPQFVPE----- 597
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
P L I HP E + ND L + + LL+TGPNMGGKST
Sbjct: 598 -------PKLDIVAGRHPVVEAEVERF-IANDTRLSAER-----KLLLITGPNMGGKSTY 644
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R L +LA +G FVP + V+ D IFTR+GA+D + G STF+VE TETA++L
Sbjct: 645 MRQNALITLLAHVGSFVPADSAVIGPIDRIFTRIGASDDLAGGRSTFMVEMTETANILNN 704
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
A++ SLV++DE+GRGTSTFDG A+A+A+ R L+E+ LFATHY LT +P V
Sbjct: 705 ASEHSLVLMDEVGRGTSTFDGLALAWAIARALIEKNRAYTLFATHYFELTTLAGEYPAVA 764
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
H++ + +VFL+ + G +SYGL VA +AGVP KV+ A
Sbjct: 765 NVHLSAVEHKD---------RIVFLHHVEDGPASQSYGLAVAQLAGVPAKVIRDA 810
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 156/399 (39%), Gaps = 77/399 (19%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK- 322
P + + + +QY +K ++ D LLF+++G FYEL+ DAE + LD +T G
Sbjct: 27 PMSTPQHTPMMQQYLALKREHADKLLFYRMGDFYELFYEDAEKASRLLDITLTARGASAG 86
Query: 323 --CRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
+ GI + + +LV G V EQ+ AK + RK+V +VTP T
Sbjct: 87 NPIKMAGIPYHAAEGYLARLVKMGESVAIAEQIGDPALAKG-----PVERKVVRIVTPGT 141
Query: 381 TVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGA 438
D + D L + V G A++ A+ ++ ++ D L +
Sbjct: 142 LTDAALLDDKRDNLVLAVNMV-----KGVLGLAWLSLASGEFKIMQASVED------LAS 190
Query: 439 LLMQVSPKE-VIYENRGLC-----KEAQKALR--KFSAGSAALELTPAMAVTDFLDASEV 490
L ++ P E VI ++ GL +K L +F S+ L LT D
Sbjct: 191 ELERLKPAELVIPDDTGLAAFEGISTPKKKLPPWQFDIESSKLALTRHFGTRDL------ 244
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
F + P + + + S G +H+S L ++D
Sbjct: 245 -------AGFGADTLPVAVGAAGALLEYVK-STQGVNPAHISALSVEDA----------- 285
Query: 551 YRDCLRMDGQTL-------------------YLDSCVTSSGKRLLRSWICHPLKDVEGIN 591
+ +RMD T LD+C TS G RLL W+ HP+++ +
Sbjct: 286 -GELIRMDAATRRNLELTETIRGEASPTLASLLDTCATSMGSRLLGHWLHHPMRNHGKLA 344
Query: 592 NRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
R V L+ + V L ++ D+ER+ RV R
Sbjct: 345 RRHGAVRALLSRYQDVHA---ELDQVSDIERITSRVALR 380
>gi|425744810|ref|ZP_18862865.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-323]
gi|425490406|gb|EKU56706.1| DNA mismatch repair protein MutS [Acinetobacter baumannii WC-323]
Length = 885
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 171/320 (53%), Gaps = 38/320 (11%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+ IDVL +FA A ++S A RP ++ +KI+ HP +
Sbjct: 561 AIAHIDVLANFAHQARLNSWA--RPEFTAET------------CIKIQAGRHPVVEALHK 606
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
PND L D R ++TGPNMGGKST +R T L +LA G FVP + L
Sbjct: 607 APFTPNDTFL-----DPQHRMAIITGPNMGGKSTFMRQTALISLLAYCGSFVPAKAAKLG 661
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV++DE+GRGTST+DG ++A
Sbjct: 662 SIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVLMDEVGRGTSTYDGLSLA 721
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE---- 982
+A L +R+ C LFATHY LT E S ++ +NY QE
Sbjct: 722 WACVVDLTKRVKCLCLFATHYFELT-ELGS-------------EAGIDNYHVTAQELNGN 767
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSS 1042
L+ L+++ G +S+GLQVA +AG+P V++ A ++K + SS Q FSS
Sbjct: 768 LILLHKVQHGPASQSHGLQVAKLAGIPASVIKEAQKRLKILEKQQHQHLPSSVQNDLFSS 827
Query: 1043 L-HEEWLKTIVNVSRVDCNS 1061
+ HE + I + V+ S
Sbjct: 828 VEHEIETQVIEKIVEVEAKS 847
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 161/380 (42%), Gaps = 60/380 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK+ Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKTDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKASGQPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGTIGP-DAV 391
+ E +AR K GR + EQ + RK+V ++TP T T D +G +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLGSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N G A +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIQQNQ---IGLALLDLSAGIFKVQ--QQDYKPEQLAIELARLMPSEILID 184
Query: 452 NRGL-------------CKEAQKALRKFSAGSAALELTPAMAVTDF---------LDASE 489
+ C A++ F+ +A L +V+ L +
Sbjct: 185 EDLIDQNIIEQIKKNLDCPIAKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPFPLARAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P ++++ ++ F AL + RN +I+
Sbjct: 245 AAALIHYAKETQKTALPHIRSIQ--IEQSTDFIALDPITR-----------RNLEII--- 288
Query: 550 VYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+ L G +L+ ++ C T+ G RLL + P++D ++ RLD E L+K
Sbjct: 289 ---EPLFEHGTSLFQLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDATEQLLKGFHEA 345
Query: 608 MVVAQYLRKLPDLERLLGRV 627
V L+++ D+ER+L RV
Sbjct: 346 -PVRLVLKEIGDIERVLSRV 364
>gi|384412173|ref|YP_005621538.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|335932547|gb|AEH63087.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 869
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 181/334 (54%), Gaps = 31/334 (9%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
++++ L+ LIE +EK H +C D L V+A + A+ + P
Sbjct: 524 IESKHLACLIESTLEKRD------HIAACADALARLDVSAGFADCAVQKNWTRPTV---- 573
Query: 782 VRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
D+ I+G HP AL ++G V N+ L D R L+TGPNMGGK
Sbjct: 574 ---DDSCCFDVIQG-RHPVVENALVKSGERFVANNTNL-----DPKNRLWLVTGPNMGGK 624
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST LR L +LAQ G FVP E + L D +F+R+GA+D + G STF+VE ETA++
Sbjct: 625 STFLRQNALLAVLAQTGSFVPAEKARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAI 684
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L +AT S VILDE+GRGTST+DG AIA+AV + + CR LFATHYH LT+ + P
Sbjct: 685 LSQATNRSFVILDEVGRGTSTYDGLAIAWAVVEAVHDINACRCLFATHYHELTQLTSRLP 744
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
++L H+ +GD LV L+ + GA SYG++VA +AG+P V++ AS
Sbjct: 745 ALSLHHVRA-------KEWQGD--LVLLHEMAEGAADRSYGIEVARLAGLPPVVLKRASE 795
Query: 1019 AALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIV 1052
++ S G++ SS S+ + +T++
Sbjct: 796 VLAQLENSSGKNNDSSANLSDLPLFGVQAFQTVL 829
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 173/370 (46%), Gaps = 34/370 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY+ +K+Q D LLF+++G F+EL+ DA+ LD +T G + G+
Sbjct: 3 EQYYELKAQAQDCLLFYRMGDFFELFFDDAKKASAILDIALTSRGTHIEESIPMCGVPIH 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKAR-HTNSVISRKLVNVVTPST-TVDGTIGPD 389
+ + +L+ G +V +Q+ET +AK R + +++ R ++ VVT T T + +
Sbjct: 63 AAESYLARLIKAGCRVAIADQVETPAEAKKRGGSKALVKRAIIRVVTAGTLTEEALLDSR 122
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIND---DASCAALGALLMQVSPK 446
A + L + G D +G A D + R T+++ D+ A L A + ++P+
Sbjct: 123 AANWL-VAVARAGSD-----FGLAAADISTGRFETITLSEGRLDSELARLSAAEV-IAPE 175
Query: 447 EVI----YENRGLCKEAQKALRKFSA--GSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
++ Y+NR + + + F++ G A L+ ++ D +L ++G
Sbjct: 176 SLVQQAAYKNR-IPQAVALSNECFNSPHGEARLKSLFKISTLDGFGIFSRAELAAIDGLL 234
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ 560
W L+ Q + F ++ +++D R+ L R DG
Sbjct: 235 -----AW---LDRAGQGKLPFLQQPVRRAYADHMLIDAATRSSLELTASTEG---RRDGS 283
Query: 561 TL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
+ +D VT +G RLL + + PL D++ I+ RLD+VE+ ++ + V L+ PD
Sbjct: 284 LVSSIDHTVTGAGARLLTADLGAPLMDIDVIHKRLDLVEFFFYDTLLREDVRDLLKGSPD 343
Query: 620 LERLLGRVKA 629
L R+LGR+ A
Sbjct: 344 LARVLGRLVA 353
>gi|398382544|ref|ZP_10540629.1| DNA mismatch repair protein MutS [Sphingobium sp. AP49]
gi|397726650|gb|EJK87083.1| DNA mismatch repair protein MutS [Sphingobium sp. AP49]
Length = 880
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 142/239 (59%), Gaps = 19/239 (7%)
Query: 782 VRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDI-LLGEDSDDCLPRTLLLTGPNMGG 837
V +D GP L I G HP AL G V ND L+ D R L+TGPNMGG
Sbjct: 582 VVEDGVGPCLDIVGGRHPVVEDALRAQGQPFVANDCRLVATD------RLWLVTGPNMGG 635
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KST LR L VILAQ G FVP E L+L D +F+R+GA+D + G STF+VE ETA+
Sbjct: 636 KSTFLRQNALIVILAQAGAFVPAESATLTLVDRLFSRVGASDNLARGRSTFMVEMVETAA 695
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957
+L +AT+ S VILDE+GRGTST+DG A+A+AV + E CR LFATHYH LT+ +
Sbjct: 696 ILAQATEHSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNRCRCLFATHYHELTRLAETL 755
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++L H+ KGD LV L+ L G SYGL VA +AG+P V++ A
Sbjct: 756 NALSLHHVRA-------REWKGD--LVLLHELAEGPADRSYGLAVARLAGLPPMVLKRA 805
Score = 83.6 bits (205), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 159/376 (42%), Gaps = 57/376 (15%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY +K++ D LLF+++G F+EL+ DA++ LD +T G + G+
Sbjct: 17 QYLALKAEAQDCLLFYRMGDFFELFFDDAKMAAATLDIALTSRGEHGGEPIPMCGVPAHS 76
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+ + +L+ G++V EQ E+ +AKAR ++++R +V VT T + T+
Sbjct: 77 AESYLARLIKGGHRVAIAEQTESPAEAKARGGKTLVARAIVRYVTAGTLTEETLLDSRRD 136
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+ + G G G A D + R T+ A L A L ++ P EV+
Sbjct: 137 NMLVALAQTG---GEGELGLAAADISTGRFETMTVR----TADLPAELARLRPSEVVI-- 187
Query: 453 RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL---VQLNGYFNGSSSPWSK 509
A+ ++ + S G A A + +K+L L+G+ +S+
Sbjct: 188 ------AEGSMIEVSNGHA----FDKAAFSSIRAEEALKRLFAVATLDGF-----GQFSR 232
Query: 510 ALENVMQHDIGFSALGGLISHLSRL------MLDDVLR---NGDILPYKVYRDCLRM--- 557
A +A+GGLI +L L LR I R+ L +
Sbjct: 233 A---------ELAAMGGLIGYLDHAGKGTLPFLAPPLRKTSGAHIAIDAATRESLEIVAT 283
Query: 558 -----DGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
G L +D VT +G RLL + PL D I+ RL +V+ ++ + +
Sbjct: 284 TGGTRSGSLLGAIDRTVTGAGARLLAQDLSAPLMDAPLIDARLGLVQLFHDDAILRGQLR 343
Query: 612 QYLRKLPDLERLLGRV 627
LR LPD+ R LGRV
Sbjct: 344 AALRALPDIGRALGRV 359
>gi|242767113|ref|XP_002341306.1| DNA mismatch repair protein Msh2, putative [Talaromyces stipitatus
ATCC 10500]
gi|218724502|gb|EED23919.1| DNA mismatch repair protein Msh2, putative [Talaromyces stipitatus
ATCC 10500]
Length = 944
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 165/300 (55%), Gaps = 19/300 (6%)
Query: 726 TLSILIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
T S L++ + A+ + V+ ++ +DV+ SFA + + A RP + P+
Sbjct: 572 TQSGLVQEVVNVAASYCPVLEQLAGTLAHLDVIVSFAHVSVHAPTAYTRPKMHPRGTGNT 631
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
+ +K HP ++ + ND+ L D + L++TGPNMGGKST
Sbjct: 632 I----------LKEARHPCMEMQDDISFITNDVSLLRD----VSSFLIITGPNMGGKSTY 677
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
+R + ++AQ+GCFVPC L++ D I R+GA+D + G STF+ E ET+++L+
Sbjct: 678 IRQIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKS 737
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT +SL+I+DELGRGTST+DG+ +A+A+ +V I C LFATH+H LT +P
Sbjct: 738 ATSESLIIIDELGRGTSTYDGFGLAWAISEHIVREIGCFGLFATHFHELTALADRYPKAV 797
Query: 962 LQHMACAFKSNS-ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
AF ++ E S +E+ LYR+ G C +S+G+ VA + P+KVV A A
Sbjct: 798 KNLHVVAFIGDAKEGESSKKREVTLLYRVEPGVCDQSFGIHVAELVRFPEKVVNMARQKA 857
Score = 45.4 bits (106), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLPDLER 622
L+ C T G RLL W+ PL D I R +VE + ++E+ + ++LR +PDL R
Sbjct: 328 LNHCKTPVGSRLLAQWLKQPLMDQVEIEKRHQLVEAFVVDTELRQTMQEEHLRAIPDLYR 387
Query: 623 LLGRVKARVQAS 634
L R + R QA+
Sbjct: 388 LAKRFQ-RSQAN 398
>gi|422341112|ref|ZP_16422053.1| DNA mismatch repair protein mutS [Treponema denticola F0402]
gi|325474683|gb|EGC77869.1| DNA mismatch repair protein mutS [Treponema denticola F0402]
Length = 894
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/279 (42%), Positives = 159/279 (56%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 562 VAELDVNQSFAQAA-----------VLHAWTRPELCGDSG--ILNIIGGRHPVV--ENHL 606
Query: 806 -GGLPVPNDI--LLGEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE++ D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 607 RAGDFVPNSIELLSGENTNPEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 666
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 667 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 726
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ H + + + +
Sbjct: 727 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR--LEHEKIINLKL---------DVLEA 775
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 776 EGKIVFLKKVVPGAAGNSYGIHVAGLAGIPQSVLTRAEN 814
Score = 79.3 bits (194), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 161/391 (41%), Gaps = 56/391 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
K + +QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ G
Sbjct: 3 KPQTPMMRQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCG 60
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTI 386
I + +L+ G K+ EQ + RK+V V+TP T D +
Sbjct: 61 IPYHAAKIYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFL 114
Query: 387 GPDAVHLLAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ + LA EGN G D G A++D + +
Sbjct: 115 EQGSNNYLAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKE 171
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV 494
+ +++PKE++ + Q +F A L P+M + D S K+L
Sbjct: 172 IGRINPKEILIQ--------QSIQNEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLC 223
Query: 495 ------QLNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
L G+ + SP + LE + DI + + + + LDD R
Sbjct: 224 STFGTENLKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTR 283
Query: 542 -NGDILPYKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDV 596
N ++L LR + + L V T+ G RLLR I +PL+ I+ RLD
Sbjct: 284 KNLELLT------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKNEIDKRLDK 337
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
V L K+ + ++ + L + D+ERL GR+
Sbjct: 338 VNSLFKDGKASAIIRETLSSILDIERLSGRI 368
>gi|312111577|ref|YP_003989893.1| DNA mismatch repair protein MutS [Geobacillus sp. Y4.1MC1]
gi|311216678|gb|ADP75282.1| DNA mismatch repair protein MutS [Geobacillus sp. Y4.1MC1]
Length = 864
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 171/310 (55%), Gaps = 46/310 (14%)
Query: 722 LDAETLSILIE--LFI---EKASQW----SEVIHAISCIDVLRSFAVTAS-----MSSGA 767
L+AE SI +E LF+ E+ Q+ + AIS +DVL+SFA + +
Sbjct: 505 LEAEEKSIELEYELFVDIRERVKQYIPRLQSLAKAISELDVLQSFATVSEERHYVKPQFS 564
Query: 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRT 827
HR LI+ ++P V + G VPND + ++ +
Sbjct: 565 EHRELIIQAGRHPVVEKVLGTQTY------------------VPNDCYMNKERE-----L 601
Query: 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGEST 887
LL+TGPNM GKST +R L I+AQ+GCFVP + VL + D +FTR+GA D +++G+ST
Sbjct: 602 LLITGPNMSGKSTYMRQIALTAIMAQIGCFVPADKAVLPIFDQVFTRIGAADDLVSGQST 661
Query: 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947
F+VE E + + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I + LF+THY
Sbjct: 662 FMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHY 721
Query: 948 HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAG 1007
H LT S P + H++ A + N ++VFL+++ G +SYG+ VA +AG
Sbjct: 722 HELTDLEQSLPKLKNVHVS-AVEENG--------KVVFLHKIEEGPADQSYGIHVAELAG 772
Query: 1008 VPQKVVEAAS 1017
+P ++ A
Sbjct: 773 LPSSLIRRAE 782
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 170/395 (43%), Gaps = 43/395 (10%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K + +QY ++K+QY D LFF++G FYE++ DA +EL+ +T G +V
Sbjct: 1 MAKYTPMIQQYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERV 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ +E+L+++GYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAQGYIEQLISKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTVME 115
Query: 384 GT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
G + + +L + G YGFA+ D L I AS + L
Sbjct: 116 GRGLLEKENNYLATVTLFADG------TYGFAYTD---LSTGENRITILASFEDVMNELY 166
Query: 442 QVSPKEVIY------ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ 495
+ KE++ + + L KE + G+ E +A D ++ +
Sbjct: 167 AIGTKEIVLASDFPSDEQQLLKERYGVTISYEDGTEMPEGFATIAGGLAQDKLQI-TFAR 225
Query: 496 LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL 555
L Y + ++ V + + M D+ ++ + R
Sbjct: 226 LLHYIIRTQKRRLDHMQPVQ------------VYQVDHYMKIDLYSKRNLELTETIRSKG 273
Query: 556 RMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
R LD VT+ G RLL+ W+ PL D I RL +VE L+ + + + LR
Sbjct: 274 RKGSLLWLLDETVTAMGGRLLKQWLDRPLLDRGQIERRLHMVETLIHHYFERQELRERLR 333
Query: 616 KLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQ 649
++ D+ERL GRV V A I L KK L+Q
Sbjct: 334 EVYDVERLAGRVAYGNVNARDLIQL----KKSLQQ 364
>gi|348029913|ref|YP_004872599.1| DNA mismatch repair protein(MutS) [Glaciecola nitratireducens FR1064]
gi|347947256|gb|AEP30606.1| DNA mismatch repair protein(MutS) [Glaciecola nitratireducens FR1064]
Length = 893
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 186/315 (59%), Gaps = 37/315 (11%)
Query: 711 FPDYQNHDVTDLDAETLSILIE------LFIEKASQWSEVIH---AISCIDVLRSFAVTA 761
P+ + H+ L +++ ++ +E LF + A + ++ A++ +DVL +FA A
Sbjct: 514 IPELKAHEDKVLTSQSKALALEKKLYEALFDDIAPELPNLMQSAVALATLDVLTNFAERA 573
Query: 762 SMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSD 821
+ +HRP ++ ++ + G ++ + + PF + N + + +++
Sbjct: 574 DTLN--LHRPELVDEN---IINYSEGRHLVVEEVMNSPF---------IANPLFMDDNT- 618
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
R L++TGPNMGGKST +R T L V+LA +GC+VP + + D IFTR+GA D +
Sbjct: 619 ----RMLMITGPNMGGKSTYMRQTALIVLLAYVGCYVPAQDVKIGPIDRIFTRIGAADDL 674
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
+G STF+VE TETA++L AT +SLV++DE+GRGTST+DG ++A++ + L E+++
Sbjct: 675 ASGRSTFMVEMTETANILNNATANSLVLMDEIGRGTSTYDGLSLAWSCAQWLSEKLHAFT 734
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LFATHY LT S P +T H++ + + E+ F++++ GA +SYGLQ
Sbjct: 735 LFATHYFELTSLSDSIPTITNVHLSAV---------EHNDEIRFMHQVQQGAASKSYGLQ 785
Query: 1002 VAVMAGVPQKVVEAA 1016
VA +AGVP+ V+++A
Sbjct: 786 VAKLAGVPKAVIDSA 800
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 59/379 (15%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI-- 333
QY +K+ + D+LLF+++G FYEL+ DA+ L+ I+L+ GK I +G+
Sbjct: 22 QYLKIKADHPDILLFYRMGDFYELFFDDAKKASNLLN--ISLTARGKSGGEPIPMAGVPY 79
Query: 334 ---DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---G 387
++ + KLV G V EQ+ +K + R + +VTP T D +
Sbjct: 80 HAAENYLAKLVKMGESVAICEQIGDPATSKG-----PVERAVQRIVTPGTVTDEALLEES 134
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
D+V LLAI + VYG A +D + + I D S A A L ++ P E
Sbjct: 135 KDSV-LLAITKVKD-------VYGLASIDITSGQF---MIFDAQSDEAFQAELQRIQPAE 183
Query: 448 VIYENRGLCK-----EAQKALRK-----FSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
++Y + C E K LR+ F +A L+L +L+
Sbjct: 184 ILYPEQ--CAFFHLIEKCKGLRRRPQWEFDTDTANLKLNTQFGTK------------ELD 229
Query: 498 GYFNGSSSPWSKALENVMQH--DIGFSALGGLISHLSRLMLDD--VLRNGDILPYKVYRD 553
G+ + + A V+Q+ + +AL L +S+ D+ ++ ++ R
Sbjct: 230 GFGINNQAVAIGAAGCVLQYVQETQRTALPHL-RKISQYRADESVLMDAATQQNLELTRT 288
Query: 554 CLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
TL+ L++ T+ G RLL+ W+ P+ D + R + + + S V+
Sbjct: 289 LSGSSENTLFAVLNNTSTAMGSRLLQRWLHRPITDKNKLLFRQNTIADV--QSHNYSVLQ 346
Query: 612 QYLRKLPDLERLLGRVKAR 630
+L+++ D+ER+L R+ R
Sbjct: 347 DFLKQIGDVERILARMALR 365
>gi|395331444|gb|EJF63825.1| DNA mismatch repair protein [Dichomitus squalens LYAD-421 SS1]
Length = 964
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 150/497 (30%), Positives = 254/497 (51%), Gaps = 50/497 (10%)
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSS--GKRLLRSWICHPLKDVEG---- 589
L+DV+R VY+ L+++G ++S TSS K LL+ LK+ +G
Sbjct: 422 LEDVVR--------VYQAVLKLEGFISTIESMETSSEDQKALLKEIYLTKLKEFDGSLSK 473
Query: 590 ----INNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKK 645
+ LD+ E ++N V + Y +L L L V+ + A V +G +
Sbjct: 474 YSEMVQQTLDLDE--LENHNFV-IKPDYDARLQSLADKLAEVRDGLDAEHRKVGKALGLE 530
Query: 646 VLKQQVKVFGSLVKG--LRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQF 703
L +++ + S G RI+ + + L+H + L + K +F + L T+
Sbjct: 531 -LDKKLHLENSPTYGYCFRISKNDVKLLHDDKKRYIELGAL-KSGVFFTTPTLKGLSTE- 587
Query: 704 EAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASM 763
+ ++T+ + T S L++ + AS ++ V+ A++ +V+ VT S+
Sbjct: 588 ------------HTEITEQYSRTQSGLVKEVVNIASTYTPVLEALN--NVIAHLDVTVSL 633
Query: 764 SSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDC 823
+ A++ P + + A G L +K HP ++ +PND+ + +D +
Sbjct: 634 AHVAVNAPETYVKPEILA----RGSGSLVLKEARHPCLEVQDDLSFIPNDVEMIKDESEF 689
Query: 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMT 883
++TGPNMGGKST +R + ++AQ G FVPC + + D+I R+GA D +
Sbjct: 690 Q----IITGPNMGGKSTYIRQVGVIALMAQTGSFVPCASARIPIFDSILCRVGAGDSQLK 745
Query: 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943
G STF+ E ETA++L+ AT+DSL+I+DELGRGTST+DG+ +A+A+ + +I+ +F
Sbjct: 746 GISTFMAEMLETATILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEHIASQIHAFCMF 805
Query: 944 ATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVA 1003
ATH+H LT HV H+ A S+SE GD+++ LY++ G C +S+G+ VA
Sbjct: 806 ATHFHELTALDQEISHVKNLHV-VAHVSDSEE-GGGDRDITLLYKVEPGVCDQSFGIHVA 863
Query: 1004 VMAGVPQKVVEAASHAA 1020
+A P+ VV+ A A
Sbjct: 864 ELANFPESVVKLARKKA 880
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 146/361 (40%), Gaps = 70/361 (19%)
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY---ENRGLCKEAQKALRKFS 467
G A+ D + + V D+ + L++Q+S KE I N G E L+K
Sbjct: 173 GVAYADSSTRELGVADFVDNDLFSNTETLIIQLSVKEAIIPTGTNSG-TTERDFDLKKLK 231
Query: 468 A-----GSAALELTPAMAVTDFLDASEVKKLVQL-NGYFNGSSSPWSKALENVMQHDIGF 521
G E P +DF + LV+L N SSS S A +
Sbjct: 232 EVLDRCGVVITERKP----SDFTVKNINDDLVRLLNASAMPSSSTDSAATIPQLSLPTAP 287
Query: 522 SALGGLISHLSRLMLDD-------VLRNGDILPYKVYRDCLRMDGQTL------------ 562
+AL L+S+LS +L D +R D+ Y +R+D L
Sbjct: 288 AALSALVSYLS--LLSDPSNHGAWSIRTHDLSQY------MRLDASALRALNLTEAPGNI 339
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA- 611
L+ C T+ G RLL SW+ PL + I R +VE +++ ++
Sbjct: 340 GSNKNTTLFGLLNKCKTAQGSRLLGSWLKQPLVNRHDILRRQSLVEAFFEDANTRRILQD 399
Query: 612 QYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM 671
YL+ +PD+ R+ R + + + +V + + VLK ++ F S ++ + + + +
Sbjct: 400 DYLKLMPDMHRICKRFQKSIASLEDVV--RVYQAVLK--LEGFISTIESMETSSEDQKAL 455
Query: 672 HKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVT---DLDAETLS 728
KE ++ K FDGS L K+ + +D D + +NH+ D DA S
Sbjct: 456 LKEIYLT-------KLKEFDGS--LSKYSEMVQQTLDLD--ELENHNFVIKPDYDARLQS 504
Query: 729 I 729
+
Sbjct: 505 L 505
>gi|383861845|ref|XP_003706395.1| PREDICTED: DNA mismatch repair protein Msh2-like [Megachile
rotundata]
Length = 920
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 166/311 (53%), Gaps = 24/311 (7%)
Query: 725 ETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
+ +S +IE+ +S + + ++C+DVL +FA A ++ RP +LP
Sbjct: 573 KVVSEIIEIAAGYSSPVKNIGNILACLDVLTAFASAAVSANKPYIRPQMLPSEAGE---- 628
Query: 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRA 844
+ + HP G + ND+ + C+ +TGPNMGGKST +R+
Sbjct: 629 ------FNLVQVRHPCLENLEGMDYIANDVNFKREYHFCI-----ITGPNMGGKSTYIRS 677
Query: 845 TCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904
+ +LA +G FVPC+ +SL D I R+GA D + G STF++E ETA++L+ AT
Sbjct: 678 AGVTALLAHIGSFVPCDEAKISLLDCILARVGADDSQLKGLSTFMMEMIETAAILKTATC 737
Query: 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964
+SLV++DELGRGTST++G IA+++ L + I C LFATH+H +TK L+
Sbjct: 738 NSLVLIDELGRGTSTYEGCGIAWSIAEYLAKEIKCYCLFATHFHEITK---------LEE 788
Query: 965 MACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024
A K+ D +L LY++ G C +S+G+ VA MA PQ V+E A ++
Sbjct: 789 EVSAVKNQHVTALVDDNKLTLLYKVKPGICDQSFGIHVAKMANFPQNVIEFAKRKQAELE 848
Query: 1025 KSIGESFKSSE 1035
+FK S+
Sbjct: 849 DYQHSTFKGSD 859
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 58/349 (16%)
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+V ++A+K G D S V G + VD A V D+ S + L +L++ ++PKE +
Sbjct: 140 SVRVIAVK---LGMDGKSRVVGLSCVDTTATSFSVCEFQDNESFSNLESLIVTLAPKECL 196
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
E Q + + + L +F S V+ L L + G P +
Sbjct: 197 LIQGEGSYEFQTLKQLMERNNVMITLKKK---NEFSSESVVQDLNTLIKFAKGQQ-PNVQ 252
Query: 510 ALENVMQHDIGFSALGGLISHL---------SRLMLDDVLRNG----DILPYKVYRDCLR 556
+L + + SA LI +L ++ +LD + ++ D K R
Sbjct: 253 SLPEI-NLNFAMSATAALIKYLDLTSDEGNLNQFILDQIEQSRYLKLDAAAIKALNIEPR 311
Query: 557 MDGQTLY-----------LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
+D ++ LD C T+ G RLL W+ PLKD+ I R D+VE L+ ++E
Sbjct: 312 VDTLSILSGNAPTSILTLLDKCRTAQGHRLLAQWVRQPLKDLSLIKERHDIVEALVNDNE 371
Query: 606 VVMVVAQ-YLRKLPDLERL---LGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL 661
+ +++ +LR++PDL+ L L R KA +Q I + ++ L + ++ F ++
Sbjct: 372 LRSNLSEDHLRRIPDLQVLAKKLARKKATLQDCYKIYMCMLH---LPRLIEQFSNIN--- 425
Query: 662 RIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSD 710
+ +L +F P+ + +DK+ E ID D
Sbjct: 426 ----------------VVALKTVFSNPLTELIKDMDKYQQMVEQTIDLD 458
>gi|298373253|ref|ZP_06983242.1| DNA mismatch repair protein MutS [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274305|gb|EFI15857.1| DNA mismatch repair protein MutS [Bacteroidetes oral taxon 274 str.
F0058]
Length = 896
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 195/354 (55%), Gaps = 41/354 (11%)
Query: 700 LTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELF---IEKASQWSEVI----HAISCID 752
LT E I + +Y+ + + + LS+ +F I SQ+ I + ++ ID
Sbjct: 519 LTSAERYITEELKEYETK-ILGAEEKILSLEQRIFNALISSVSQFIATIQLDCNILAQID 577
Query: 753 VLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPN 812
L SF +S + I+ S +RQ PV++ K L +GE+ VPN
Sbjct: 578 CLLSFT---RISQENRYNCPIVNDSTTIDIRQGRH-PVIE-KNL----PIGESY---VPN 625
Query: 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
DILL DD + +++TGPNM GKS LLR T L V++AQ+GC+VP E + + D IF
Sbjct: 626 DILL----DDENQQIIIITGPNMAGKSALLRQTALIVLMAQIGCYVPAESASIGIVDKIF 681
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
TR+GA+D I +GESTF+VE E AS+L + SL++ DELGRGTST+DG +IA+A+
Sbjct: 682 TRVGASDNIASGESTFMVEMNEAASILNNISDRSLILFDELGRGTSTYDGISIAWAIVEY 741
Query: 933 LVERINCR--LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+ E CR LFATHYH L + S+ + K+ + + + D +++F+ +L
Sbjct: 742 IHEMPKCRAKTLFATHYHELNEMERSYRRI---------KNYNVSVREVDGKVLFIRKLV 792
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK------SIGESFKSSEQRS 1038
G S+G+ VA +AG+P V++ A L ++ S+G+S K++ QR+
Sbjct: 793 RGGSEHSFGIHVAKIAGMPPSVIKRADEILLQLENSQRQSDSVGKSMKNASQRA 846
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 166/416 (39%), Gaps = 94/416 (22%)
Query: 257 KRTLYIP---PEALKKMSAS--QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
K +YI P + K++ + KQ+ +K +Y D LL F+VG FYE + DA L
Sbjct: 12 KTLIYISFHRPAYMSKIADTPLMKQHKEIKEKYPDALLLFRVGDFYETFAEDAVKAASIL 71
Query: 312 DWKITLSGVGKCRQV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVI 368
+T G V G +D + KLV G +V +QLE + T +++
Sbjct: 72 GITLTKRQNGAAAHVELAGFPHHALDTYLPKLVRAGLRVAVCDQLE-----DPKLTKTLV 126
Query: 369 SRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGT 426
R + +VTP + + + LA+ E N C G +F+D + ++
Sbjct: 127 KRGVTELVTPGVSTNDNV-------LAVGENNFLCAVHFDKNQVGISFLDISTGEFYLS- 178
Query: 427 INDDASCAALGALLMQVSPKEVIYE--NRGLCKEA---------------------QKAL 463
S L +PKEV+YE NR L +E +
Sbjct: 179 ---QGSLEYAEKLFNSFAPKEVLYERKNRKLFEETLPTKIAKFEQDDWVYTIESARDRLF 235
Query: 464 RKFSAGS--------AALELTPAMAVTDFLDASEVKKLVQLN--GYFNGSSSPWSKALEN 513
++F S + A A+ +LD +E K++ + GS W
Sbjct: 236 KQFEVNSFKGFGVEHLTCGIIAAGAILYYLDQTEHKQISHITKISRIEGSHYVW------ 289
Query: 514 VMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSS 571
L R +RN ++L D + TL+ LD T
Sbjct: 290 -----------------LDRF----TIRNLELL------DSPDDEHNTLFAVLDRNKTPM 322
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
G RL+R W+ PLK+V+ I +RL VV + +N E ++ + L K+ DLER+L +V
Sbjct: 323 GSRLMRRWLTFPLKEVKPITDRLSVVTHFYRNPEQRSIIEESLDKIGDLERILSKV 378
>gi|336432331|ref|ZP_08612166.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_58FAA]
gi|336018668|gb|EGN48405.1| DNA mismatch repair protein mutS [Lachnospiraceae bacterium
2_1_58FAA]
Length = 883
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 193/362 (53%), Gaps = 57/362 (15%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
AI+ +DV S A+ A S+ RP I N V+ IK HP
Sbjct: 552 AIAKVDVFASLALVAERSNYV--RPKI------------NEQGVIDIKDGRHPVVEK--- 594
Query: 807 GLPVPNDILLGEDS--DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864
+PND+ + D+ DD R ++TGPNM GKST +R L V++AQLG FVP
Sbjct: 595 --MIPNDMFISNDTYLDDKKQRISIITGPNMAGKSTYMRQAALIVLMAQLGSFVPASSAN 652
Query: 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924
+ L D IFTR+GA+D + +G+STF+VE TE A++L+ AT SL+ILDE+GRGTSTFDG +
Sbjct: 653 IGLVDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATSKSLLILDEIGRGTSTFDGLS 712
Query: 925 IAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982
IA+AV + + + + LFATHYH LT E H + + A K KGD +
Sbjct: 713 IAWAVVEYISDNKLLGAKTLFATHYHELT-ELEGKIH-NVNNYCIAVK------EKGD-D 763
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVP-------QKVVEAASHAALAMKKSIGESFKSSE 1035
+VFL ++ G +SYG+QVA +AGVP +++VE S + + S S + +
Sbjct: 764 IVFLRKIVKGGADKSYGIQVAKLAGVPDVVITRAKEIVEELSDEDITTRVSEIASREKEQ 823
Query: 1036 QRSEFSSLHEEWLKTIVNVSRVDCNSDDD----------------DAYDTLFCLWHELKN 1079
++ + + ++E + +S D DDD DA +T++ L ++LKN
Sbjct: 824 KKKQKTKKYDEV--DMAQMSLFDTVKDDDVLEELKSIDVGNLTPVDALNTIYRLQNKLKN 881
Query: 1080 SY 1081
+
Sbjct: 882 RW 883
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/402 (23%), Positives = 168/402 (41%), Gaps = 84/402 (20%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ +++ +QY K QY D +LF+++G FYE++ DA +EL+ +T G K
Sbjct: 1 MAELTPMMQQYIETKKQYQDCILFYRLGDFYEMFFEDALTASRELEITLTGKNCGQEEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ + KLV++GYKV EQ+E +QAK ++ R++V +VTP T +D
Sbjct: 61 PMCGVPYHAVEGYLNKLVSKGYKVAICEQVEDPKQAKG-----IVKREVVRIVTPGTNLD 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVV--------YGFAFVDCAALRVWVGTINDDASCAA 435
A+ E N ++ YG + D +V + + A
Sbjct: 116 TQ---------ALDETK----NNYIMCIVYIADRYGLSIADVTTGDYFVTELEESAK--- 159
Query: 436 LGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ 495
L + + P E+I C E+ + +G +L + +T +
Sbjct: 160 LLDEIYRFMPSEII------CNESY-----YMSGMDLDDLKDRLGIT----------IYS 198
Query: 496 LNGYFNGSSSPWSKALEN----------VMQHDIGFSALGGLISHLSR------------ 533
L+ ++ + K LE+ + +D G + G L+ +L
Sbjct: 199 LDSWYFDDAVCRQKLLEHFKVASFAGLGLEDYDCGIISAGALLQYLYETQKNSLAQLTHI 258
Query: 534 --------LMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLK 585
+MLD R L + R+ + LD T+ G R+LR ++ PL
Sbjct: 259 TAYTTGKYMMLDSSTRRNLELC-ETLREKQKRGSLLWVLDKTKTAMGARMLRKYVEQPLI 317
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + I RLD VE L + + + +YL + DLERL+ +V
Sbjct: 318 EKKEILRRLDAVEELKEQAICREEIREYLSPVYDLERLVTKV 359
>gi|259501313|ref|ZP_05744215.1| DNA mismatch repair protein HexA [Lactobacillus iners DSM 13335]
gi|302190963|ref|ZP_07267217.1| DNA mismatch repair protein MutS [Lactobacillus iners AB-1]
gi|259167283|gb|EEW51778.1| DNA mismatch repair protein HexA [Lactobacillus iners DSM 13335]
Length = 854
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 178/325 (54%), Gaps = 29/325 (8%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TDL+ E + L E + ++ +S +DVL +F++ + ++
Sbjct: 512 TDLEYELFTNLREDIKKYIPALQKLAKQLSSLDVLSTFSLLSEQNNYVC----------- 560
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P QD+ + I HP +PND+ + E ++ L+TGPNM GK
Sbjct: 561 PQFSQDSSA--INIVNGRHPVVEKVMSDEEYIPNDVKMDEQTN-----IFLITGPNMSGK 613
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L +I+AQ+GCF+P + VL + D IFTR+GA D +++G+STF+VE +E
Sbjct: 614 STYMRQLALIIIMAQMGCFIPADSAVLPIFDKIFTRIGAGDDLISGKSTFMVEMSEANIA 673
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ AT+ SL++ DE+GRGT+T+DG A+A A+ + L +++ + LFATHYH LT
Sbjct: 674 LKNATKRSLILFDEIGRGTATYDGMALAGAIIKYLHDKVGAKTLFATHYHELTD------ 727
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
L FK+ ++ + L+FL+++ GA +SYG+ VA +AG+P KV+ A+H
Sbjct: 728 ---LDQELAHFKNIHVGATQENGHLIFLHKILPGAADQSYGIHVAQLAGLPTKVLREATH 784
Query: 1019 AALAMKK-SIGESFKSSEQRSEFSS 1042
++K S ++ S EQ F S
Sbjct: 785 MLKQLEKHSDNQAAFSDEQLDLFGS 809
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 100/383 (26%), Positives = 166/383 (43%), Gaps = 63/383 (16%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
+K++ +QY+ +K QY D LF++VG FYEL+E DA G K L+ +T + +
Sbjct: 3 EKITPMMEQYYKIKQQYPDAFLFYRVGDFYELFEDDAVKGAKLLELTLTHRSNKSAKPIP 62
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ +D + LV +GYKV EQLE ++A+ ++ R ++ +VTP T ++
Sbjct: 63 MAGVPHLAVDSYINTLVDKGYKVAICEQLEDPKKAQG-----MVKRGIIQLVTPGTVIND 117
Query: 385 TIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAA-------LRVWVGTINDDAS 432
PD KE N C G +G + D + L W +N+
Sbjct: 118 --NPDQA-----KESNYLTSLCSNSQG---WGLTYCDLSTGESYATHLTSWEMIVNE--- 164
Query: 433 CAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG---SAALELTPAMAVTDFL---- 485
L+ + +E++Y L + Q L+K AG S ++L+ A ++
Sbjct: 165 -------LLSLQTRELVY-GETLTSDKQIFLKK--AGITLSQPVKLSKEHAEVSYVTQQL 214
Query: 486 -DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD 544
+ E+ QL Y + L+ ++ +SH+ + L+ +
Sbjct: 215 HNQLEIAATKQLLAYLLATQKRSLAHLQVTQSYEPNQYL---QMSHIVQTNLELI----- 266
Query: 545 ILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNS 604
K + +M LD T+ G RLL+SWI PL + I +R VV L +
Sbjct: 267 ----KSAKTGKKMGSLFWLLDKTSTAMGGRLLKSWIERPLISLSEIKSRQLVVTALFDDY 322
Query: 605 EVVMVVAQYLRKLPDLERLLGRV 627
+ + L+ + DLERL GRV
Sbjct: 323 FSREKIIKQLQGVYDLERLTGRV 345
>gi|289578351|ref|YP_003476978.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9]
gi|289528064|gb|ADD02416.1| DNA mismatch repair protein MutS [Thermoanaerobacter italicus Ab9]
Length = 866
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 157/271 (57%), Gaps = 28/271 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ D ++ IK HP +
Sbjct: 552 IATIDVLISFAEVAE--TNRYTKPIV-----------DYSDRIV-IKEGRHPVIETISDE 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 598 SFVANDIEIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGI 652
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L+ AT SL+ILDE+GRGTST+DG +IA+
Sbjct: 653 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTSTYDGMSIAH 712
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL
Sbjct: 713 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
++ G +SYG+QV+ +AG+P +VE A
Sbjct: 764 KIVPGGADKSYGIQVSKLAGLPYSIVERAKE 794
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 70/387 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KL+ +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKG-----LVKRDVVRIYTPGT----IINPESM 118
Query: 392 ------HLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
+L+++ KE DN YG VD ++ I + + +++ +
Sbjct: 119 DEKTNNYLVSVFKER----DN----YGICAVDVTTGDLYATEIKNCKDNKKVYDEIIKYA 170
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504
P E+I N K K ++ F + + A+ L E K+++
Sbjct: 171 PSEII-ANEDFLKN-NKYIKIFKSNNCAVNTYEKK-----LYYEEKSKIIK--------- 214
Query: 505 SPWSKALENVMQHDIGF--SALGGL-----------ISHLSRLML----------DDVLR 541
+ ++K LE + D + ++L L + H+++L++ + ++
Sbjct: 215 NQFNKKLEELGIKDKPYVVNSLSTLFCYLNELQKTALKHINKLLIYEDNSYMGLDSNAIK 274
Query: 542 NGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
N +IL + G L LD VT G RLL+ W+ PL + E I+ RL VE L
Sbjct: 275 NLEILESNKNKS---KKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEEL 331
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + Q L K+ DLERL ++
Sbjct: 332 FNDYKNRQDLKQLLNKIYDLERLSSKI 358
>gi|126656702|ref|ZP_01727916.1| DNA mismatch repair protein [Cyanothece sp. CCY0110]
gi|126621922|gb|EAZ92630.1| DNA mismatch repair protein [Cyanothece sp. CCY0110]
Length = 884
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 180/351 (51%), Gaps = 48/351 (13%)
Query: 700 LTQFEAAIDSDFPDYQNHDVT---DLDAETLSILIELFI---EKASQWSEVIHAISCIDV 753
LT E I + + + +T DL+ I +EL + EKA + ++ A++ IDV
Sbjct: 538 LTNEERYITPELKERETRILTAQDDLNKLEYEIFVELRLKVAEKAQEIRKIAKAVAAIDV 597
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG-GLPVPN 812
L FA A RP IL +++I+ HP G GL VPN
Sbjct: 598 LSGFAEIAVFQGYC--RPEILDSR------------LIEIRDGRHPVVEQSLGFGLFVPN 643
Query: 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872
+G + + P ++LTGPN GKS LR L ++AQ G FVP L ++D IF
Sbjct: 644 STNMGNNEKETNPDLIILTGPNASGKSCYLRQVGLIQLMAQTGSFVPATTAKLGISDRIF 703
Query: 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932
TR+GA D + TG+STF+VE ETA++L AT+ SL++LDE+GRGT+TFDG +IA++V
Sbjct: 704 TRVGAVDDLATGQSTFMVEMNETANILNHATEKSLILLDEIGRGTATFDGLSIAWSVAEY 763
Query: 933 LVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL----VFLYR 988
L + R +FATHYH L E AS SN NY QEL VFL++
Sbjct: 764 LATEVQGRTIFATHYHEL-NELAS------------ILSNVANYQVTVQELPHEIVFLHQ 810
Query: 989 LTSGACPESYGLQVAVMAGVPQKV----------VEAASHAALAMKKSIGE 1029
+ G +SYG++ +AG+P V +E S AL +++ I +
Sbjct: 811 VRPGGADKSYGIEAGRLAGLPASVISRAKQVMNQIETHSKIALGLREGISQ 861
Score = 66.2 bits (160), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL----SG 319
P +KK++ + Y VK QY + LL ++VG F+E + DA +EL+ +T
Sbjct: 25 PLEVKKLTPMYQHYVKVKQQYPNALLLYRVGDFFECFFQDAVTISQELELMLTSKEGGKE 84
Query: 320 VGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPS 379
+G+ G+ +D LV +GY V +Q+E S QA A+ ++ R++ ++TP
Sbjct: 85 IGRVAMTGVPHHALDRYSRLLVEKGYAVAICDQVEDSAQAAAQ--GRMVERQITKLLTPG 142
Query: 380 TTVD 383
T D
Sbjct: 143 TLTD 146
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G R LR W+ PL ++GI R + ++ L+ N + + Q LR + DLER+
Sbjct: 335 LDRTCTAMGGRALRRWLLEPLISIKGIIARQNSIQELIDNPTLRQDIRQLLRSIYDLERI 394
Query: 624 LGRVKARVQ--------ASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEG 675
GRV A A S + L + + VL+ Q +L I DL L H
Sbjct: 395 SGRVGAGTANARDLLSLAESLVKLKELAELVLQGQSLYLKALQN---IPPDLEKLGH--- 448
Query: 676 HIIPSLSRIFKPPIF--DGS---DGLDKFLTQFEAAIDSDFPDYQNHDVTD 721
++I L + PP+ DG DG++ L ++ D N ++T+
Sbjct: 449 YVIDHL--VESPPLHLKDGGVIRDGINADLDTMRKRLEDDRQWLANLEITE 497
>gi|449543528|gb|EMD34504.1| hypothetical protein CERSUDRAFT_97762 [Ceriporiopsis subvermispora B]
Length = 1096
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 172/317 (54%), Gaps = 28/317 (8%)
Query: 722 LDAETLSILIELFIEKASQ-----WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ 776
L AE I + F+++ SQ + ++ ++ D L S A A +L
Sbjct: 766 LAAEAQRIYLA-FLKRISQEHYGLLRDTVNKLAVADCLLSLAQVA-----------LLEG 813
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
P Q G L+I HP VPN + +GE P ++++TGPNMG
Sbjct: 814 YTKPVFTQAGG---LEIVEGRHPMVEVLTSAPFVPNTVRMGEGE----PGSIVITGPNMG 866
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKS+ +R L I+AQ+G +VP + L L D+I TR+GA+D + G STF+VE ET+
Sbjct: 867 GKSSAVRMIALCAIMAQIGSYVPAKSMKLGLMDSILTRMGASDELSRGRSTFMVEMQETS 926
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
+L AT SLVILDELGRGTSTFDG A+A AV + LVE C+ LF THY + +
Sbjct: 927 DILHIATSRSLVILDELGRGTSTFDGMAVASAVLQHLVENRKCKTLFITHYPHVAIDLER 986
Query: 957 H-PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEA 1015
PH +++M F ++ G +E+ FLYRLT G ES+G++ A +AG+P+ ++
Sbjct: 987 RFPH-DVRNMHMGFTEDTR--IDGTREVTFLYRLTPGITTESFGVECARLAGLPESILRL 1043
Query: 1016 ASHAALAMKKSIGESFK 1032
A+ A +M+ + + +
Sbjct: 1044 ATEKARSMQDATEQRIR 1060
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 161/401 (40%), Gaps = 61/401 (15%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDD 335
Q ++K++Y +LL +VG YE DA I KEL I Q I +
Sbjct: 209 QIRDLKAKYPGILLMVEVGYKIIFYEDDARIASKELG--IMCYPKRNFMQASIPVHRKEV 266
Query: 336 AVEKLVARGYKVGRIEQLETSEQAK-ARHTNSVISRKLVNVVTPSTTVDG---------T 385
++KL+++GYKVG +EQ ET+ K + + +R+L ++ T +T VD T
Sbjct: 267 HLKKLLSQGYKVGIVEQTETAALKKVGDNRGAPFTRELNHLYTSATYVDALNSVDDLEPT 326
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
P + L+ G D V +W D++ L ++ + P
Sbjct: 327 SPPSLMCLVESLRGGMSVDERVSVAIVVITPSTGDVIW-DEFEDNSMRIELETRMVHMRP 385
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSA-------------ALELTPAMAVTDFLDASEVKK 492
+E++ L + +K L ++A +A AL T A +V A + K
Sbjct: 386 QELLLPASKLSRSTEK-LISYTAENAVSDQKIRIERYEDALSYTDAFSVLSKFYADDTKF 444
Query: 493 LVQLNGYFNG----SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY 548
G+ +G S + + K + H + + LS ++D L
Sbjct: 445 AAASEGFTSGKLMASIADFPKQAAMALAHSVQY---------LSGFGVEDCLLETKFFAK 495
Query: 549 KVYRDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVE 588
R + ++G TL LD T G R LR W+ PL D
Sbjct: 496 FTERTHMLLNGNTLTNLEIYRNETDYTPKGSLMWILDRTTTKFGARTLRQWVGRPLVDST 555
Query: 589 GINNRLDVVEYLMKN-SEVVMVVAQYLRKLPDLERLLGRVK 628
+ R + ++ ++++ S + ++ Q L++LPDL R L R++
Sbjct: 556 VLRQRAEAIDEIIRDTSPRLTLLRQLLKRLPDLARGLCRIQ 596
>gi|295706200|ref|YP_003599275.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319]
gi|294803859|gb|ADF40925.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319]
Length = 885
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 191/364 (52%), Gaps = 40/364 (10%)
Query: 712 PDYQNHDVTDLDAE--TLSILIELFIE-----KA--SQWSEVIHAISCIDVLRSFAVTAS 762
P+ + + L+AE + + ELF++ KA + E+ +S +DVL+ FA +
Sbjct: 495 PELKEKEALILEAEEKIVELEYELFLQIREEVKAYIPRLQELAKKVSELDVLQCFAKISE 554
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSD 821
R P + + NG HP N VPND + +DS
Sbjct: 555 ------ERHYTKPIFSSEDISIQNG---------RHPVVEKVMNSQEYVPNDCQMTDDSS 599
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ILAQ+GCFVP + VL + D +FTR+GA D +
Sbjct: 600 -----ILLITGPNMSGKSTYMRQVALTAILAQIGCFVPADEAVLPIFDQVFTRIGAADDL 654
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE ET + + ATQ SL++LDE+GRGTST+DG A+A A+ + E I C+
Sbjct: 655 ISGQSTFMVEMLETKNAVTNATQSSLILLDEIGRGTSTYDGMALAQAIIEYVHEHIGCKT 714
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT S P + H++ K+ ++VFL+++ GA +SYG+
Sbjct: 715 LFSTHYHELTVLDESLPALKNVHVSAVEKNG---------KVVFLHKIKDGAADKSYGIH 765
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIG-ESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCN 1060
VA +A +P ++E A +++S E + + +R E + + ++V R D
Sbjct: 766 VAELAELPDPLLERARVILHDLEQSSEREPVRQAPKREEMTQQVPQEGASLVQEERADSK 825
Query: 1061 SDDD 1064
D+
Sbjct: 826 KADE 829
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCR--QVGISES 331
+QY +K++Y D LFF++G FYE++ DA +EL+ +T G G+ R G+
Sbjct: 9 QQYLRIKAEYQDAFLFFRLGDFYEMFFEDATTASQELEITLTSRDGGGQERIPMCGVPYH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
+E+L+ +G+KV EQ+E +H V+ R++V V++P T ++
Sbjct: 69 SAPTYIERLIEKGFKVAICEQVE-----DPKHAKGVVKREVVQVISPGTLMN 115
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT+ G RLL++WI PL I+NRL++V+ LMK + + L+ + DLERL
Sbjct: 282 LDQTVTAMGGRLLKNWIDRPLLKQADIDNRLNMVDVLMKQFFEREELRELLKDVYDLERL 341
Query: 624 LGRV 627
GRV
Sbjct: 342 AGRV 345
>gi|215919092|ref|NP_820057.2| DNA mismatch repair protein MutS [Coxiella burnetii RSA 493]
gi|206583977|gb|AAO90571.2| DNA mismatch repair protein [Coxiella burnetii RSA 493]
Length = 871
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 169/311 (54%), Gaps = 28/311 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ IEK + AI+ +DVL + A A + N Q P
Sbjct: 551 LLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNAPQFCDYP 596
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++KI+ HP +PND L E R L++TGPNMGGKST +R T L
Sbjct: 597 IIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYMRQTALIT 651
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L AT++SLV+
Sbjct: 652 LLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVL 711
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++AYA L ++ LFATHY LT AS TLQ A
Sbjct: 712 MDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTA-LAS----TLQ----AV 762
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
K+ + + +++++FL+ L G +SYGLQVA +AG+P+ V++ A ++ +
Sbjct: 763 KNVHLDAVEHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEELENPVIS 822
Query: 1030 SFKSSEQRSEF 1040
+ +Q F
Sbjct: 823 ETQQPQQNELF 833
Score = 73.2 bits (178), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 34 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 93
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 94 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 148
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 149 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 197
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 198 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 248
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 249 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 299
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 300 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 358
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 359 ENLRHIGDLERIVARIALR 377
>gi|358448379|ref|ZP_09158883.1| DNA mismatch repair protein MutS [Marinobacter manganoxydans MnI7-9]
gi|357227476|gb|EHJ05937.1| DNA mismatch repair protein MutS [Marinobacter manganoxydans MnI7-9]
Length = 876
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 154/271 (56%), Gaps = 28/271 (10%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
A++ +DVL +FA A+ S P S++P + G + + L PF
Sbjct: 550 QALAELDVLSNFAERAT--SLRFSAPEF---SESPGFDIEEGRHPVVEQLLDEPF----- 599
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
VPND+L+ D R L++TGPNMGGKST +R L +LA G FVP V+
Sbjct: 600 ----VPNDLLM-----DTQRRMLVMTGPNMGGKSTYMRQAALIALLAYTGSFVPANRAVI 650
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
D IFTR+G++D I G STF+VE TETA++L AT+ SLV++DE+GRGTSTFDG ++
Sbjct: 651 GPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLSL 710
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+A L I C LFATHY LT + A LQH + +E+ D +VF
Sbjct: 711 AWATAEHLAREIRCYTLFATHYFELT-QLADE----LQHAVNVHLTATEH----DDSIVF 761
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
L+ + G +SYGLQVA +AGVPQ V+ A
Sbjct: 762 LHNVHDGPASQSYGLQVAKLAGVPQDVIRNA 792
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 160/392 (40%), Gaps = 66/392 (16%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L K + +QY +K Q+ + L+F+++G FYEL+ DA+ + +D ITL+ G+
Sbjct: 8 LSKHTPMMQQYLKIKGQHPNELVFYRMGDFYELFYEDAKKAAELMD--ITLTARGQSGGN 65
Query: 327 GISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
I +GI + + +LV G + EQ+ +K + R++V +VTP T
Sbjct: 66 PIPMAGIPYHSSEGYIARLVRAGQSIAICEQIGDPATSKG-----PVERQVVRIVTPGTL 120
Query: 382 VDGTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
D D L+AI N +GFA +D ++ R V + + AL
Sbjct: 121 SDDAYLEDRRDNLLVAIY-------NHREQFGFASLDISSGRFAVSELEN---LEALQGE 170
Query: 440 LMQVSPKEVI------YEN--RGLCKEAQKALRKFSAGSAALELTPAMAVTDF--LDASE 489
L ++ P E++ YE+ G ++ F + +A +T + V D E
Sbjct: 171 LQRLRPAEILISEDFPYEDVLEGFTGIRRQGPWLFESDTARRVITHQLQVRDLTGFGCEE 230
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL-------RN 542
+ V G + + + H I L+R D+ + RN
Sbjct: 231 LNLAVCAAGCLLQYAKETQR---TALPH----------IRKLTRERRDEAVILDAASRRN 277
Query: 543 GDILPYKVYRDCLRMDGQTLYL----DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVE 598
+I D M G L D TS G R LR W+ PL+DVE + R V
Sbjct: 278 LEI-------DTNLMGGHQYTLAWVMDRTATSMGGRELRRWLNRPLRDVEIVRQRQQAVS 330
Query: 599 YLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
L+ V L+ + D+ER+L RV R
Sbjct: 331 ALLDGFH-YEPVHDLLKAVGDIERVLARVALR 361
>gi|260665334|ref|ZP_05866182.1| DNA mismatch repair protein MutS [Lactobacillus jensenii SJ-7A-US]
gi|260560838|gb|EEX26814.1| DNA mismatch repair protein MutS [Lactobacillus jensenii SJ-7A-US]
Length = 854
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 177/327 (54%), Gaps = 38/327 (11%)
Query: 700 LTQFEAAIDSDFPDYQN------HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
LT E I + +++N + TDL+ + S L E + E+ + I+ +D
Sbjct: 479 LTGSERYITPELKEHENLILEAENKSTDLEYQIFSDLREYIKTFIPKLQELGNTIASLDA 538
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPV 810
L SFA A ++ P+ QD+ +K+ HP L + G +
Sbjct: 539 LTSFATVAEENNYC-----------RPSFHQDS--QEIKVIAGRHPVVEKVLAD--GSYI 583
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PNDI + +D+ L+TGPNM GKST +R L ++AQ+G FVP L + D
Sbjct: 584 PNDIQMADDTS-----VFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEASLPIFDQ 638
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
IFTR+GA D +++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+
Sbjct: 639 IFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAIV 698
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+ L +++ + LFATHYH LT + H+ H+ ++ + +L+FL+++
Sbjct: 699 KYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGA---------TQENGKLIFLHKIL 749
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAAS 1017
G +SYG+ VA +AG+P KV+ AS
Sbjct: 750 PGPADQSYGIHVAQLAGLPNKVLREAS 776
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 164/362 (45%), Gaps = 35/362 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
KQY+++KSQY D LF++VG FYEL+E DA G + L+ +T + G+
Sbjct: 3 KQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTENPIPMAGVPHQ 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D V LV +GYKV EQLE +QAK ++ R ++ +VTP T ++ GP+
Sbjct: 63 AVDSYVNTLVEKGYKVALCEQLEDPKQAKG-----MVKRGIIQLVTPGTMMNE--GPNGA 115
Query: 392 HLLAIKEGNCGPDNGSVVYGF--AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
KE N S GF A+ D + ++ + S A + L+ + KEV+
Sbjct: 116 -----KESNYLTSVFSTKSGFGLAYSDLSTGEIFTTHLK---SFADVLNELLSLRTKEVV 167
Query: 450 YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSK 509
+E G ++QK + K S +T + + D +EV +Q N + +K
Sbjct: 168 FE--GSLSDSQKDVLKKS------NITVSTPIQDQEKHAEVSYAIQ--KLSNQAEKDATK 217
Query: 510 ALENVM----QHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLD 565
L + + + + L + V++N L + +M LD
Sbjct: 218 QLVTYLLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASA-KTGKKMGSLFWLLD 276
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
T+ G RLL+ W+ PL + I R +V+ ++ N + V L+ + DLERL G
Sbjct: 277 KTNTAMGGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFIREAVKDALKGVYDLERLTG 336
Query: 626 RV 627
R+
Sbjct: 337 RI 338
>gi|238855606|ref|ZP_04645907.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 269-3]
gi|313473091|ref|ZP_07813575.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 1153]
gi|238831750|gb|EEQ24086.1| DNA mismatch repair protein MutS [Lactobacillus jensenii 269-3]
gi|313448795|gb|EEQ67673.2| DNA mismatch repair protein MutS [Lactobacillus jensenii 1153]
Length = 860
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 177/327 (54%), Gaps = 38/327 (11%)
Query: 700 LTQFEAAIDSDFPDYQN------HDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDV 753
LT E I + +++N + TDL+ + S L E + E+ + I+ +D
Sbjct: 485 LTGSERYITPELKEHENLILEAENKSTDLEYQIFSDLREYIKTFIPKLQELGNTIASLDA 544
Query: 754 LRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPV 810
L SFA A ++ P+ QD+ +K+ HP L + G +
Sbjct: 545 LTSFATVAEENNYC-----------RPSFHQDSQE--IKVIAGRHPVVEKVLAD--GSYI 589
Query: 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870
PNDI + +D+ L+TGPNM GKST +R L ++AQ+G FVP L + D
Sbjct: 590 PNDIQMADDTS-----VFLITGPNMSGKSTYMRQMALIAVMAQVGSFVPATEASLPIFDQ 644
Query: 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930
IFTR+GA D +++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+
Sbjct: 645 IFTRIGAADDLISGQSTFMVEMSEANEALQNATKRSLVLFDEIGRGTATYDGMALAGAIV 704
Query: 931 RQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLT 990
+ L +++ + LFATHYH LT + H+ H+ ++ + +L+FL+++
Sbjct: 705 KYLHDKVGAKTLFATHYHELTDMEKTLDHLKNIHVGA---------TQENGKLIFLHKIL 755
Query: 991 SGACPESYGLQVAVMAGVPQKVVEAAS 1017
G +SYG+ VA +AG+P KV+ AS
Sbjct: 756 PGPADQSYGIHVAQLAGLPNKVLREAS 782
Score = 110 bits (275), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 165/364 (45%), Gaps = 39/364 (10%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
KQY+++KSQY D LF++VG FYEL+E DA G + L+ +T + G+
Sbjct: 9 KQYYDIKSQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRSNKTENPIPMAGVPHQ 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D V LV +GYKV EQLE +QAK ++ R ++ +VTP T ++ GP+
Sbjct: 69 AVDSYVNTLVEKGYKVALCEQLEDPKQAKG-----MVKRGIIQLVTPGTMMNE--GPNGA 121
Query: 392 ----HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
+L ++ G +G A+ D + ++ + S A + L+ + KE
Sbjct: 122 KESNYLTSVFSTKSG-------FGLAYSDLSTGEIFTTHLK---SFADVLNELLSLRTKE 171
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPW 507
V++E G ++QK + K S +T + + D +EV +Q N +
Sbjct: 172 VVFE--GSLSDSQKDVLKKS------NITVSTPIQDQEKHAEVSYAIQ--KLSNQAEKDA 221
Query: 508 SKALENVM----QHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+K L + + + + L + V++N L + +M
Sbjct: 222 TKQLVTYLLVTQKRSLAHLQIAKSYEVSQYLQMSHVVQNNLELVASA-KTGKKMGSLFWL 280
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLL+ W+ PL + I R +V+ ++ N + V L+ + DLERL
Sbjct: 281 LDKTNTAMGGRLLKQWLARPLLSISEIEKRQKIVQAMLDNYFIREAVKDALKGVYDLERL 340
Query: 624 LGRV 627
GR+
Sbjct: 341 TGRI 344
>gi|432873486|ref|XP_004072240.1| PREDICTED: DNA mismatch repair protein Msh3-like [Oryzias latipes]
Length = 1090
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 174/335 (51%), Gaps = 32/335 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
++ F E I ++ ID L S A A G RP V +D P
Sbjct: 772 FLDQFGEHYHTMKRAISHLATIDCLFSLAEVAQQ--GGYCRP---------KVCEDQ--P 818
Query: 790 VLKIKGLWHP---FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846
+ I+ HP +GE VPN L D RT+++TGPNMGGKS+ +R
Sbjct: 819 QIMIRDGRHPAIDLLMGEQNQF-VPNHTDLQGDGK----RTMIITGPNMGGKSSYIRQVA 873
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
L I+AQ+G FVP L L D I+TR+GA+D I G STF+ E TE + ++ +AT+ S
Sbjct: 874 LICIMAQIGSFVPASEACLGLLDGIYTRMGASDNIYKGRSTFMEELTEASEIISRATERS 933
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHM 965
LVILDELGRGTST DG AIAYA + + LF THY PL + +P HV+ HM
Sbjct: 934 LVILDELGRGTSTHDGIAIAYATLEYFIRHVKSFTLFVTHYPPLCELERMYPDHVSNFHM 993
Query: 966 ACAFKSN--SENYSKGDQE---LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
A S + GD + + FLY LT GA +SYGL VA +A VP ++ A+ A
Sbjct: 994 AFLLNETHISSDTKDGDVQPEFITFLYNLTEGAAGQSYGLNVAKLADVPDPILCTAARKA 1053
Query: 1021 LAMKKSIGESFKSSEQRSEFSSLHE-----EWLKT 1050
++ ++ +S ++ +E S+ + +WL++
Sbjct: 1054 QELESAVEARRRSKKRLTEMWSIADKPSLLQWLQS 1088
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 161/380 (42%), Gaps = 47/380 (12%)
Query: 286 DVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345
D LL + G Y + DAEI KEL+ IT I + V +LV+ G+
Sbjct: 210 DALLAVECGYKYRFFGDDAEIAAKELN--ITCHLDHNFMTCSIPSHRLFVHVRRLVSHGH 267
Query: 346 KVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTV-------------------DGT 385
KVG ++Q ET+ +A + N++ +R+L + T ST V D
Sbjct: 268 KVGVVKQTETAAIKASGANRNALFTRQLSALYTKSTLVGEDVNQICSLEDVDEGSHGDVM 327
Query: 386 IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSP 445
+ P LL I E N + G V + V++ D +S + L + +++++P
Sbjct: 328 VDPPDSFLLCISE-NWDKLRKQLTVGLVAVQPSTGDVFLDCFPDGSSRSELESRILKINP 386
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E++ + L +E + L + GS + + D + + ++ S
Sbjct: 387 VEILVPS-DLSEETCRLLLSVTNGSFQADDRARVERRDSAQFEYTSAINTVTQFYCRSQQ 445
Query: 506 PWSKALENVMQHDIG-FSALGGLISHLSRLMLDDVLRNGD------------ILPYKVYR 552
S++L V + LG LI +L L+ VLR+ IL R
Sbjct: 446 EDSRSLWRVASFESPVICCLGPLIQYLQEFNLERVLRSESSFQRLSCESEAMILNAATLR 505
Query: 553 DCLRMDGQT---------LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK- 602
+ ++ QT LD T G+RL+R W+ PL D++ I+ R D V+ +M+
Sbjct: 506 NLEILNNQTDRGVRGSLFWVLDHSRTPFGRRLMRKWVSQPLTDLQRISERQDAVQEIMES 565
Query: 603 NSEVVMVVAQYLRKLPDLER 622
+S ++ V L +LPDLER
Sbjct: 566 DSPILDSVKSLLPRLPDLER 585
>gi|328792194|ref|XP_001121207.2| PREDICTED: DNA mismatch repair protein Msh2 [Apis mellifera]
Length = 920
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 170/317 (53%), Gaps = 38/317 (11%)
Query: 714 YQNHDVTDLDAETLSI----------LIELFIEKASQWSEVIHAI----SCIDVLRSFAV 759
++++ + DL+ E + I ++ IE A+ +S I AI + IDVL +FA
Sbjct: 548 FRSNKLNDLNDEYIGIRDKYIMEQKKVVAEIIEIAAGYSNTIKAIGNVLASIDVLTAFAS 607
Query: 760 TASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGED 819
A ++ RP +LP K + + HP + G + NDI +
Sbjct: 608 AAICANKPYVRPEMLPSEKGE----------FNLIQVRHPCLEVQEGVDYIANDINFKRE 657
Query: 820 SDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD 879
C+ +TGPNMGGKST +R+ + ++A +G FVPC+ +SL D I R+GA D
Sbjct: 658 CHFCI-----ITGPNMGGKSTYIRSAGVTALMAHIGSFVPCDQARISLLDCILARVGADD 712
Query: 880 RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939
+ G STF++E ETA++L+ AT +SLV++DELGRGTST++G IA+++ L + I C
Sbjct: 713 CQLKGLSTFMMEMIETAAILKTATCNSLVLIDELGRGTSTYEGCGIAWSIAEYLAKEIKC 772
Query: 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYG 999
LFATH+H +TK V QH+ +N +L LY++ G C +S+G
Sbjct: 773 YCLFATHFHEITKLEEEISTVKNQHVTALVDNN---------KLTLLYKIKPGICDQSFG 823
Query: 1000 LQVAVMAGVPQKVVEAA 1016
+ VA MA PQ V+E A
Sbjct: 824 IHVAKMANFPQDVIEFA 840
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 36/156 (23%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
LD C T G RLL WI PLKD+ I R D+VE L+ ++E+ + + +LR++PDL+
Sbjct: 330 LDKCRTPQGHRLLAQWIRQPLKDLSLIKERHDIVEVLVNDNELRSNLNEDHLRRIPDLQV 389
Query: 623 L---LGRVKARVQ----ASSCIV-LPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKE 674
L L R KA +Q +C+ LP++ ++ LK
Sbjct: 390 LAKKLARKKATLQDCYKIYTCMSHLPILLEQFLKIN------------------------ 425
Query: 675 GHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSD 710
I +L +F P+ + +DKF E ID D
Sbjct: 426 ---IIALKTMFTDPLSEFIKDMDKFQQMVEQTIDLD 458
>gi|282878840|ref|ZP_06287607.1| DNA mismatch repair protein MutS [Prevotella buccalis ATCC 35310]
gi|281299048|gb|EFA91450.1| DNA mismatch repair protein MutS [Prevotella buccalis ATCC 35310]
Length = 887
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 146/249 (58%), Gaps = 24/249 (9%)
Query: 777 SKNPAVR-QDNGGPVLKIKGLWHP-----FALGENGGLPVPNDILLGEDSDDCLPRTLLL 830
+N VR Q + VL IK HP LGE VPNDI L + + +++
Sbjct: 578 EENQYVRPQIDATDVLDIKQGRHPVIEMQLPLGET---YVPNDIYLDTEKQ----QVMMI 630
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNM GKS LLR T L V+LAQ+GCFVP E + L D IFTR+GA+D I GESTF+V
Sbjct: 631 TGPNMAGKSALLRQTALIVLLAQIGCFVPAERAKIGLVDKIFTRVGASDNISLGESTFMV 690
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYH 948
E TE A++L T SLV+ DELGRGTST+DG +IA+A+ L E R R LFATHYH
Sbjct: 691 EMTEAANILNNVTNRSLVLFDELGRGTSTYDGISIAWAIVEYLHEQPRARARTLFATHYH 750
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
L + P + +++ + D +++F+ +L G S+G+ VA +AG+
Sbjct: 751 ELNEMEKHFPRIHNYNVSV---------KEADGKVIFMRKLERGGSEHSFGIHVAEIAGM 801
Query: 1009 PQKVVEAAS 1017
P+ +V+ A+
Sbjct: 802 PRSIVKRAN 810
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 169/384 (44%), Gaps = 43/384 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL----SGVGKC 323
K ++ KQ++++K Q+ D LL F+ G FYE Y DA G + L +T G+
Sbjct: 6 KGLTPMMKQFFSMKRQHPDALLLFRCGDFYETYGDDAIEGSRILGITLTKRNNGGNSGET 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLE----TSEQAKARH----TNSVISRKLVNV 375
G +D + KL+ G +V +QLE E+ K + T+ ++ R + +
Sbjct: 66 AMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSATDKMVKRGITEL 125
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
VTP + + L KE N G G +F+D + G D
Sbjct: 126 VTPGVAMGDNV-------LNYKENNFLAAVHFGKAACGVSFLDISTGEFLTGEGTYDYVE 178
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
LG+ +PKEV+Y++ + F EL + F + S ++L
Sbjct: 179 KLLGSF----APKEVLYDH----NNKRDFDTHFGTKYCVFELEDWV----FTEQSARQRL 226
Query: 494 VQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGDIL 546
++ L G+ A ++Q+ +I G I+ L+R+ + +R
Sbjct: 227 LKHFGTKSLKGFGVEQMKSGIVASGAILQYLEITQHTNIGHITSLARIEEERYVRLDKFT 286
Query: 547 PYKV-YRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
+ + D ++ G++L +D +T G R+LR W+ PLKDV I RLDVV+Y K+
Sbjct: 287 IHSLELIDTMQEGGRSLLNIIDKTITPMGGRMLRRWMVFPLKDVTPIQQRLDVVDYFFKD 346
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+ +V + +++ DLER++ +V
Sbjct: 347 PDFRQLVGEQFQRIGDLERIISKV 370
>gi|294650961|ref|ZP_06728302.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC
19194]
gi|292823142|gb|EFF82004.1| DNA mismatch repair protein MutS [Acinetobacter haemolyticus ATCC
19194]
Length = 879
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L++ + +Q + AI+ IDVL +FA A ++ A RP P++
Sbjct: 544 LLDELRQNIAQLQMMSAAIAYIDVLANFAHQARFNNWA--RPEFTPET------------ 589
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI HP N PND L D R ++TGPNMGGKST +R T L
Sbjct: 590 CIKIHAGRHPVVEALNKAPFTPNDTFL-----DPQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP + L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPAKSAKLGSIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATSQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E +S
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVLDLTKRVKCLCLFATHYFELT-ELSS------------- 750
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ +NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 751 ETGIDNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLKILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ +++ Q FSS+ E
Sbjct: 811 QQHQHLQNTVQNDLFSSIEHE 831
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 165/383 (43%), Gaps = 66/383 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK +Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKMEYSHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGQPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGTIGP-DAV 391
+ E +AR K GR + EQ + RK+V V+TP T T D +G +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRVLTPGTLTDDALLGSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N G A +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIQQNQ---IGIALLDLSASIFKVQ--QQDYKPEQLAIELARLMPSEILID 184
Query: 452 NRGLCKEAQKALRK-------------FSAGSAALELTPAMAVTDF---------LDASE 489
+ + + ++K F+ +A L AV+ L +
Sbjct: 185 EDLIDQNIIEHIKKNLDCSVTKRPNVDFNLNNAQKTLCDQFAVSTLSGFGLDSLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P ++++ ++ F AL + RN +I+
Sbjct: 245 AAALIHYAKETQKTALPHIRSIQ--IEQSTDFIALDPITR-----------RNLEII--- 288
Query: 550 VYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NS 604
+ L G +L+ ++ C T+ G RLL + P++D ++ RLD E L+K S
Sbjct: 289 ---EPLFEHGTSLFQLINDCQTAMGGRLLSRTLMQPIRDTAILDARLDATEQLLKGYHES 345
Query: 605 EVVMVVAQYLRKLPDLERLLGRV 627
V +V L+++ D+ER+L RV
Sbjct: 346 PVRLV----LKEIGDIERVLSRV 364
>gi|421894542|ref|ZP_16325030.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus IE-3]
gi|385272632|emb|CCG90402.1| DNA mismatch repair protein MutS [Pediococcus pentosaceus IE-3]
Length = 873
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 174/299 (58%), Gaps = 29/299 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
TDL+ + + EL ++ + ++ ++ +DVL+SFAV + +P + +KN
Sbjct: 515 TDLEYQLFKEIRELIKKQIERLQDLAKQVAELDVLQSFAVVSEKYQFV--KPTM---TKN 569
Query: 780 PAVR-QDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
A+ +D PV++ K + H VPNDI + +++D LL+TGPNM GK
Sbjct: 570 HAIEIKDGRHPVVE-KVMGHQSY--------VPNDIDMDDNTD-----ILLITGPNMSGK 615
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L VI+AQ+GCFV L + D IFTR+GA D +++G+STF+VE E
Sbjct: 616 STYMRQLALTVIMAQMGCFVAASEATLPIFDQIFTRIGAADDLISGQSTFMVEMQEANRA 675
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L+ T +SLV+ DE+GRGT+T+DG A+A ++ + + ++ + LF+THYH LT+ S
Sbjct: 676 LKDGTSNSLVLFDEIGRGTATYDGMALAQSIIEFIHQNVHAKTLFSTHYHELTELDQSLE 735
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
H+ H+ ++ + LVFL+++ G +SYG+ VA +AG+P K+++ AS
Sbjct: 736 HLKNVHVGAVEQNGN---------LVFLHKMEDGPADKSYGIHVAKLAGMPDKLLKRAS 785
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 201/459 (43%), Gaps = 82/459 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+QY D LF+++G FYEL+ DA G + L+ +T + G+
Sbjct: 12 RQYMEIKNQYPDAFLFYRIGDFYELFYDDAVKGSQLLELTLTARSKNADDPIPMCGVPHH 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ ++ LV +GYKV EQ+E AK ++ R+++ +VTP TT D + DA
Sbjct: 72 AAQNYIDILVDQGYKVAICEQMEDPRTAKG-----MVKREVIQLVTPGTTTDKS-AEDA- 124
Query: 392 HLLAIKEGN----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC--AALGALLMQVSP 445
KE N D+ + YGFA+ D + + V ++D S A+G ++
Sbjct: 125 -----KENNYLTAVNFDSKTKKYGFAYTDLSTGELKVAILDDFDSVINEAVGLQTKEIVT 179
Query: 446 KEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA--VTDFLDASEVKKLVQLNGYFNGS 503
E + E+ +E K L + + +E++ ++ + D ++E++ + QL Y +
Sbjct: 180 DESLAES---FEERFKELNILVSKQSEVEISAELSYLIQDLTSSTEIEVVKQLLTYVQTT 236
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQT 561
++ + ++ F + H S+ L L ++R G + G
Sbjct: 237 QKRNLAHIQKAVAYEPSFFL---RMDHASKYNLELTRLIRTG------------KKQGTL 281
Query: 562 LY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDL 620
L+ LD T+ G RLL+ W+ PL + I +R D V+ L+ + + + L K+ DL
Sbjct: 282 LWLLDETKTAMGGRLLKQWLDRPLIRKKEIISRQDRVQVLVDHFFERSNLQEELTKVYDL 341
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKG---LRIAMDLLMLMHKEGHI 677
ERL GRV FGS V G +++ LL + K HI
Sbjct: 342 ERLAGRV-------------------------AFGS-VNGRDLIQLKTSLLQI-PKVRHI 374
Query: 678 IPSLSRIFKPPIFDGS----DGLDKFLTQFEAAIDSDFP 712
+ LS P+FD + D + + AID D P
Sbjct: 375 LEELSE----PVFDDALEHLDPVSDIAELIQNAIDEDAP 409
>gi|403069108|ref|ZP_10910440.1| DNA mismatch repair protein MutS [Oceanobacillus sp. Ndiop]
Length = 859
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 172/319 (53%), Gaps = 45/319 (14%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIE-------KASQWSEVIHAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF+E + + +S IDVL+ FA +
Sbjct: 496 PELKEKETLILEAEEKSVDLEYILFLEIREKIKNHIPELQHLADTVSKIDVLQGFATVSE 555
Query: 763 MSSGAMHR----PLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGE 818
++ R L + ++P + Q V+K G VPND+ L E
Sbjct: 556 ANNYKRPRFVEGKLTIKNGRHPVIEQ-----VMK-------------QGSFVPNDVSLDE 597
Query: 819 DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT 878
++ R LL+TGPNM GKST +R L VI+ Q+GCFVPC+ L + D IFTR+GA
Sbjct: 598 ET-----RVLLITGPNMSGKSTYMRQLALTVIMGQIGCFVPCDEADLIIFDQIFTRIGAA 652
Query: 879 DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938
D +++G+STF+VE E + AT SL++LDE+GRGTST+DG A+A A+ + I+
Sbjct: 653 DDLVSGQSTFMVEMLEAKHAIANATDQSLILLDEIGRGTSTYDGMALAQAIVEYIHHNIH 712
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
+ LF+THYH LT L+ + K+ + + +VFL+++ GA +SY
Sbjct: 713 AKTLFSTHYHELT---------ALEESLSSLKNVHVRAEEHEGNVVFLHQIKEGAADQSY 763
Query: 999 GLQVAVMAGVPQKVVEAAS 1017
G+ VA +A +P ++E A+
Sbjct: 764 GIHVAKLAELPDALIERAT 782
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 111/439 (25%), Positives = 190/439 (43%), Gaps = 79/439 (17%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K++ +QY +K++Y D LF+++G FYE++ DA +EL+ +T GK +
Sbjct: 1 MAKLTPMMEQYIKIKAEYKDAFLFYRLGDFYEMFYDDAINAARELEITLTKRAGGKSDSI 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + ++ L+ +GYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAEGYIKTLIEKGYKVAICEQVEDPKTAKG-----VVKREVVQLITPGTVME 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSV---------VYGFAFVDCAALRVWVGTINDDASCA 434
+ +KEG +N + + A+ D + + I+ A
Sbjct: 116 SNM---------LKEG----ENNYIASLSQFKDGTHAVAYNDLSTGENRIALISHGWD-A 161
Query: 435 ALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLV 494
+ L Q + VI N L E Q L++ + L+ VT
Sbjct: 162 VIHELYNQPIREIVISSN--LPDELQGQLKE----RLGITLSYQDEVT------------ 203
Query: 495 QLNGYFNGSSSPWSKAL--ENVMQHDIGFSALGGLISHLSRLMLD-----DVLRNGDILP 547
FN S+ L E +M+ FS L I H + LD +V++ D L
Sbjct: 204 -----FNAEYRSLSENLNDERLMK---AFSRLLNYIQHTQKRSLDHLQKAEVIQLQDYLS 255
Query: 548 YKVY-RDCLRM---------DGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
+Y + L + G L+ LD T+ G R+L+ W+ PL + + I RL +
Sbjct: 256 LDMYSKRNLELTETIIKKGKHGSLLWVLDKTATAMGSRMLKKWLERPLLNRKQIEERLQI 315
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKV--LKQQVKV 653
V+ L + + L+ + D+ERL GR+ V A I L +K+ LK +
Sbjct: 316 VDGLYHGFMERDTLREILKSVYDMERLAGRIAFGNVNARDLIQLKQSLQKIPELKNTLYQ 375
Query: 654 FGSLVKGLRIAMDLLMLMH 672
F +L + R+A +L+M H
Sbjct: 376 F-NLPEINRLADELIMPEH 393
>gi|381199348|ref|ZP_09906498.1| DNA mismatch repair protein MutS [Sphingobium yanoikuyae XLDN2-5]
Length = 880
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 142/239 (59%), Gaps = 19/239 (7%)
Query: 782 VRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDI-LLGEDSDDCLPRTLLLTGPNMGG 837
V +D GP L I G HP AL G V ND L+ D R L+TGPNMGG
Sbjct: 582 VVEDGVGPCLDIVGGRHPVVEDALRAQGQPFVANDCRLVATD------RLWLVTGPNMGG 635
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KST LR L VILAQ G FVP E L+L D +F+R+GA+D + G STF+VE ETA+
Sbjct: 636 KSTFLRQNALIVILAQAGAFVPAESATLTLVDRLFSRVGASDNLARGRSTFMVEMVETAA 695
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957
+L +AT+ S VILDE+GRGTST+DG A+A+AV + E CR LFATHYH LT+ +
Sbjct: 696 ILAQATEHSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNRCRCLFATHYHELTRLSETL 755
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++L H+ KGD LV L+ L G SYGL VA +AG+P V++ A
Sbjct: 756 DALSLHHVRA-------REWKGD--LVLLHELAEGPADRSYGLAVARLAGLPPLVLKRA 805
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 157/378 (41%), Gaps = 61/378 (16%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY+ +K++ D LLF+++G F+EL+ DA++ LD +T G + + G+
Sbjct: 17 QYFTLKAEAQDCLLFYRMGDFFELFFDDAKMAAATLDIALTSRGEHAGQPIPMCGVPVHS 76
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+ + +L+ G++V EQ ET +AKAR ++++R +V VT T + T+
Sbjct: 77 AESYLARLIKGGHRVAIAEQTETPAEAKARGGKALVARAIVRYVTAGTLTEETLLDSRRD 136
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+ + G G G A D + R T+ L A L ++ P EV+
Sbjct: 137 NMLVALAQTG---GEGELGLAAADISTGRFETMTVR----AGDLPAELARLRPSEVVIAE 189
Query: 453 RGLCKEAQ-----KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPW 507
+ A KA FS+ A L AV L+G+ +
Sbjct: 190 GSTLEVANSHPFDKA--AFSSARAEDALKRLFAVA------------TLDGF-----GQF 230
Query: 508 SKALENVMQHDIGFSALGGLISHLSRL------MLDDVLR---NGDILPYKVYRDCLRMD 558
S+A +A+GGLIS+L L LR + R+ L +
Sbjct: 231 SRA---------ELAAMGGLISYLDHAGKGTLPFLAPPLRKTSGAHVAIDAATRESLEIV 281
Query: 559 GQT---------LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
T +D VT +G RLL + PL D I+ RL +V+ ++ +
Sbjct: 282 ATTGGTRAGSLLGAVDRTVTGAGARLLAQDLSAPLMDAPLIDARLGLVQLFHDDATLRSQ 341
Query: 610 VAQYLRKLPDLERLLGRV 627
+ LR LPD+ R LGRV
Sbjct: 342 LRAALRALPDIGRALGRV 359
>gi|339448738|ref|ZP_08652294.1| DNA mismatch repair protein MutS [Lactobacillus fructivorans KCTC
3543]
Length = 885
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 152/272 (55%), Gaps = 29/272 (10%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
IS +DVL+SFA + I PQ N G L +K HP G
Sbjct: 541 GISRLDVLQSFATISEKYQ------FIKPQF--------NDGHDLNVKAGRHPVVERVMG 586
Query: 807 GLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
VPND+++ + LL+TGPNM GKST +R L VILAQ+GCFVP E +
Sbjct: 587 AQSYVPNDVVMHPSVSE-----LLITGPNMSGKSTYMRQLALIVILAQMGCFVPAESADM 641
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
+ D IFTR+GA D +++G+STF+VE E L+ AT +SL++ DE+GRGTST+DG A+
Sbjct: 642 PIFDQIFTRIGAADDLISGKSTFMVEMREANEALKHATDNSLILFDEIGRGTSTYDGMAL 701
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A A+ + + I + LF+THYH LT H+ H+ K+ + LVF
Sbjct: 702 AQAIIEYIHDNIGAKTLFSTHYHELTDLDHELKHLKNVHVGAVEKNGN---------LVF 752
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
L+++ +G SYG+ VA +AG+P ++++ A+
Sbjct: 753 LHKIMNGPADRSYGINVAKLAGLPDQLLKRAN 784
Score = 92.8 bits (229), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 164/373 (43%), Gaps = 43/373 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
K+ + +QY VK QY D LF+++G FYEL+ DA G + L+ +T +
Sbjct: 5 KQTTPMMQQYQEVKDQYPDAFLFYRIGDFYELFNEDAVKGAQLLELTLTQRSRKSDNPIP 64
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
G+ + V+ LV +GYKV EQ+E + AK ++ R ++ +VTP T D
Sbjct: 65 MCGVPHQSVQSYVDTLVDKGYKVAICEQMEDPKTAKG-----MVDRDVIQLVTPGTQTDA 119
Query: 385 TIGPDAV--HLLAI--KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
+ +L A+ E N YGF+++D + + V + + A+ +
Sbjct: 120 NAENAKINNYLTAVTYSESNNA-------YGFSYIDLSTGELKVSLLKN---AEAVLNEV 169
Query: 441 MQVSPKEVIYE---NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
+ ++ KEV+ + + L + + S E+ ++ D + + L L
Sbjct: 170 INLNSKEVVVDESIDSDLIDQLKGIGVLISHEDQISEIDSDEIISTIDDPTLLDSLKMLL 229
Query: 498 GYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCL 555
Y + + ++ +Q++ S L I H S+ L L +R G
Sbjct: 230 SYISDTQKRSLSHIQPAVQYEPS-SFLK--IDHNSQYNLELTKNIRTG------------ 274
Query: 556 RMDGQTLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
+ G L++ D T+ G R L+ W+ PL D + I R +VE L+ N +A L
Sbjct: 275 KKSGTLLWIVDDTKTAMGGRKLKQWLERPLIDRKEIEQRQSLVETLLDNYYERSELADNL 334
Query: 615 RKLPDLERLLGRV 627
K+ DLERL GR+
Sbjct: 335 IKVYDLERLAGRI 347
>gi|319789352|ref|YP_004150985.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1]
gi|317113854|gb|ADU96344.1| DNA mismatch repair protein MutS [Thermovibrio ammonificans HB-1]
Length = 860
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 136/404 (33%), Positives = 207/404 (51%), Gaps = 52/404 (12%)
Query: 676 HIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFI 735
H++PS I + + + + L +FE + S + ++ E L
Sbjct: 464 HLVPS-DYIRRQTLVNAERFITPELKEFEEKVLS-----AQERIEKIEYELFKELRRFIS 517
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKG 795
++AS+ E ++ IDVL SFA A RP + + V+ + PVL+ +
Sbjct: 518 DRASRIVETAEKLATIDVLLSFAKVAR--DFNYTRPEVGDFYEVEIVQGRH--PVLE-RS 572
Query: 796 LWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
L F +PND L + LL+TGPNMGGKS LR T L V +AQ+G
Sbjct: 573 LQEEF---------IPNDTTLNREQF-----FLLITGPNMGGKSVFLRQTALIVAMAQMG 618
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP E + + D IFTR+GA+D + G STF++E ETA++L+ AT+ SL+ILDE+GR
Sbjct: 619 SFVPAESARIGVVDRIFTRVGASDSLSRGLSTFMMEMVETANILKNATEKSLIILDEIGR 678
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTST+DG +IA AV + RI + LFATHYH LT+ L+ K+
Sbjct: 679 GTSTYDGMSIARAVVEYICNRIGAKTLFATHYHELTE---------LEGQVRGVKNYHVC 729
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK-------KSIG 1028
+ D ++VF +R+ G +SYG+ VA +AG+P++VVE A +++ KS+
Sbjct: 730 VKEVDGKVVFTHRVKPGPSEKSYGIHVAELAGLPEEVVERAREILKSLESGGRKGSKSLT 789
Query: 1029 ESFKSSE--------QRSEFSS---LHEEWLKTIVNVSRVDCNS 1061
S SSE +R E+ S L E K + +++V+ ++
Sbjct: 790 YSAGSSELPLLQVAQKRVEYGSGPNLEPEVEKILREIAQVEIST 833
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 165/370 (44%), Gaps = 42/370 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG----KC 323
KK++ + +QY +K QY D +L F++G FYE++ DAE+ +EL+ +T G K
Sbjct: 3 KKVTPALRQYLELKEQYKDAILMFRMGDFYEMFFEDAEVAARELEIALTKRSFGKGGEKA 62
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ + KLV +GYKV EQLE + + V+ R +V V+TP T +
Sbjct: 63 PMCGVPYHAVEGYIAKLVKKGYKVAVCEQLE-----EPKPGKKVVKRGVVRVITPGTYFE 117
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
+ L+A+ + G + A+ + ++ T++ L +LL +
Sbjct: 118 DE--SEDRFLMAVFPASRGR------FAVAWAELSSGDFLFTTVD----AQGLRSLLNKF 165
Query: 444 SPKEVIYENRGLCKEAQKALRKFSAGSAALE----LTPAMAVTDFLDASEVKKLVQLNGY 499
PKEVI L + L K +A ++ P + + D D E+ + + +
Sbjct: 166 RPKEVI-----LPPGVKLPLVKEELPAALVQERDYFKPELKLPDAADNGELSAVNAIYRF 220
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG 559
+ + L++ ++ R + D ++ + + L D
Sbjct: 221 VEETQKEFVPKLKSPRRYTG------------ERYVYIDPYTQRNLELTEPLVENLSRDT 268
Query: 560 QTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+ T G+RLL+ WI HPL+ V IN RLD V L ++ + +++ L + D
Sbjct: 269 LFSTLNRTKTGMGRRLLKFWILHPLRSVSEINRRLDAVGELKESFLLADELSELLSGVYD 328
Query: 620 LERLLGRVKA 629
+ERL+ + A
Sbjct: 329 VERLVTKATA 338
>gi|385330787|ref|YP_005884738.1| DNA mismatch repair protein MutS [Marinobacter adhaerens HP15]
gi|311693938|gb|ADP96811.1| DNA mismatch repair protein MutS [Marinobacter adhaerens HP15]
Length = 876
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 154/271 (56%), Gaps = 28/271 (10%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
A++ +DVL +FA A+ S P S++P + G + + L PF
Sbjct: 550 QALAELDVLSNFAERAT--SLRFSAPEF---SESPGFDIEEGRHPVVEQLLDEPF----- 599
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
VPND+L+ D R L++TGPNMGGKST +R L +LA G FVP V+
Sbjct: 600 ----VPNDLLM-----DTQRRMLVITGPNMGGKSTYMRQAALIALLAYTGSFVPANRAVI 650
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
D IFTR+G++D I G STF+VE TETA++L AT+ SLV++DE+GRGTSTFDG ++
Sbjct: 651 GPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTFDGLSL 710
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+A L I C LFATHY LT + A LQH + +E+ D +VF
Sbjct: 711 AWATAEHLAREIRCYTLFATHYFELT-QLADE----LQHAVNVHLTATEH----DDSIVF 761
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
L+ + G +SYGLQVA +AGVPQ V+ A
Sbjct: 762 LHNVHDGPASQSYGLQVAKLAGVPQDVIRNA 792
Score = 74.3 bits (181), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 155/384 (40%), Gaps = 50/384 (13%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKC 323
L K + +QY +K Q+ + L+F+++G FYEL+ DA+ + +D +T SG
Sbjct: 8 LSKHTPMMQQYLKIKGQHPNELVFYRMGDFYELFYEDAKKAAELMDITLTARGQSGGNPI 67
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
GI + + +LV G + EQ+ +K + R++V +VTP T D
Sbjct: 68 PMAGIPYHSSEGYIARLVRAGQSIAICEQIGDPATSKG-----PVDRQVVRIVTPGTLSD 122
Query: 384 GTIGPDAVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
D L+AI N +GFA +D ++ R V + + AL L
Sbjct: 123 DAYLEDRRDNLLVAIY-------NHREQFGFASLDISSGRFAVSELEN---LEALQGELQ 172
Query: 442 QVSPKEVI------YEN--RGLCKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVK 491
++ P E++ YE+ G ++ F + +A +T + V D E+
Sbjct: 173 RLRPAEILISEDFPYEDVLEGFTGIRRQGPWLFESDTARRVITHQLQVRDLTGFGCEELN 232
Query: 492 KLVQLNG-YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
V G + AL ++ + ++ SR RN +I
Sbjct: 233 LAVCAAGCLLQYAKETQRTALPHIRKLTRERRDEAVILDAASR-------RNLEI----- 280
Query: 551 YRDCLRMDGQTLYL----DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEV 606
D M G L D TS G R LR W+ PL+DVE + R V L+
Sbjct: 281 --DTNLMGGHQYTLAWVMDRTATSMGGRELRRWLNRPLRDVEIVRQRQQAVSALLDGFH- 337
Query: 607 VMVVAQYLRKLPDLERLLGRVKAR 630
V L+ + D+ER+L RV R
Sbjct: 338 YEPVHDLLKAVGDIERVLARVALR 361
>gi|297544629|ref|YP_003676931.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842404|gb|ADH60920.1| DNA mismatch repair protein MutS [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 866
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 157/271 (57%), Gaps = 28/271 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ D ++ IK HP +
Sbjct: 552 IATIDVLISFAEVAE--TNRYTKPIV-----------DYSDRIV-IKEGRHPVIETISDE 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+G FVP + +
Sbjct: 598 SFVANDIEIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQIGSFVPASYAKIGI 652
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L+ AT SL+ILDE+GRGTST+DG +IA+
Sbjct: 653 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILKSATSKSLIILDEVGRGTSTYDGMSIAH 712
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL
Sbjct: 713 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKMKGVRNYNVSVEEREDDIIFLR 763
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
++ G +SYG+QV+ +AG+P +VE A
Sbjct: 764 KIVPGGADKSYGIQVSKLAGLPYSIVERAKE 794
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 175/387 (45%), Gaps = 70/387 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G + G+
Sbjct: 8 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 67
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D ++KL+ +GYKV EQLE +AK ++ R +V + TP T I P+++
Sbjct: 68 AADFYIDKLIKKGYKVAICEQLEDPAKAKG-----LVKRDVVRIYTPGT----IINPESM 118
Query: 392 ------HLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
+L+++ KE DN YG VD ++ I + + +++ +
Sbjct: 119 DEKTNNYLVSVFKER----DN----YGICAVDVTTGDLYATEIKNCKDNKKVYDEIIKYA 170
Query: 445 PKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504
P E+I N K K ++ F + + A+ L E K+++
Sbjct: 171 PSEII-ANEDFLKN-NKYIKIFKSNNCAVNTYEKK-----LYYEEKSKIIE--------- 214
Query: 505 SPWSKALENVMQHDIGF--SALGGL-----------ISHLSRLML----------DDVLR 541
+ ++K LE + D + ++L L + H+++L++ + ++
Sbjct: 215 NQFNKKLEELGIKDKPYVVNSLSTLFCYLNELQKTALKHINKLLIYEDNSYMGLDSNAIK 274
Query: 542 NGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
N +IL + G L LD VT G RLL+ W+ PL + E I+ RL VE L
Sbjct: 275 NLEILESNKNKS---KKGSLLGVLDKTVTPMGGRLLKKWLEEPLLNKEHIDARLQAVEEL 331
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + Q L K+ DLERL ++
Sbjct: 332 FNDYKNRQDLKQLLNKIYDLERLSSKI 358
>gi|427409439|ref|ZP_18899641.1| DNA mismatch repair protein mutS [Sphingobium yanoikuyae ATCC 51230]
gi|425711572|gb|EKU74587.1| DNA mismatch repair protein mutS [Sphingobium yanoikuyae ATCC 51230]
Length = 880
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 142/239 (59%), Gaps = 19/239 (7%)
Query: 782 VRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDI-LLGEDSDDCLPRTLLLTGPNMGG 837
V +D GP L I G HP AL G V ND L+ D R L+TGPNMGG
Sbjct: 582 VVEDGVGPCLDIVGGRHPVVEDALRAQGQPFVANDCRLVATD------RLWLVTGPNMGG 635
Query: 838 KSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS 897
KST LR L VILAQ G FVP E L+L D +F+R+GA+D + G STF+VE ETA+
Sbjct: 636 KSTFLRQNALIVILAQAGAFVPAESATLTLVDRLFSRVGASDNLARGRSTFMVEMVETAA 695
Query: 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957
+L +AT+ S VILDE+GRGTST+DG A+A+AV + E CR LFATHYH LT+ +
Sbjct: 696 ILAQATEHSFVILDEVGRGTSTYDGLALAWAVVEAVHEVNRCRCLFATHYHELTRLSETL 755
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++L H+ KGD LV L+ L G SYGL VA +AG+P V++ A
Sbjct: 756 DALSLHHVRA-------REWKGD--LVLLHELAEGPADRSYGLAVARLAGLPPLVLKRA 805
Score = 85.5 bits (210), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 150/363 (41%), Gaps = 31/363 (8%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
QY+ +K++ D LLF+++G F+EL+ DA++ LD +T G + + G+
Sbjct: 17 QYFTLKAEAQDCLLFYRMGDFFELFFDDAKMAAATLDIALTSRGEHAGQPIPMCGVPVHS 76
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+ + +L+ G++V EQ ET +AKAR ++++R +V VT T + T+
Sbjct: 77 AESYLARLIKGGHRVAIAEQTETPAEAKARGGKALVARAIVRYVTAGTLTEETLLDSRRD 136
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
+ + G G G A D + R T+ L A L ++ P EV+
Sbjct: 137 NMLVALAQTG---GEGELGLAAADISTGRFETMTVR----AGDLPAELARLRPSEVVIAE 189
Query: 453 RGLCKEAQ-----KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNG---YFNGSS 504
+ A KA + AL+ A+A D +L + G Y + +
Sbjct: 190 GSTLEVANSHPFDKAAFSSARAEDALKRLFAVATLDGFGQFSRAELAAMGGLIAYLDHAG 249
Query: 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYL 564
L ++ G I +R L+ V G R +
Sbjct: 250 KGTLPFLAPPLRKTSGAHV---AIDAATRESLEIVATTGGT----------RAGSLLGAV 296
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
D VT +G RLL + PL D I+ RL +V+ ++ + + LR LPD+ R L
Sbjct: 297 DRTVTGAGARLLAQDLSAPLMDAPLIDARLGLVQLFHDDATLRSQLRAALRALPDIGRAL 356
Query: 625 GRV 627
GRV
Sbjct: 357 GRV 359
>gi|357049102|ref|ZP_09110331.1| DNA mismatch repair protein mutS [Enterococcus saccharolyticus 30_1]
gi|355384402|gb|EHG31470.1| DNA mismatch repair protein mutS [Enterococcus saccharolyticus 30_1]
Length = 848
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 197/361 (54%), Gaps = 40/361 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF+E + + I AIS +DVL+SFA A
Sbjct: 496 PELKKLETVILEAEEKSVDLEYQLFLEVREEVKKSILRLQKLAKAISAVDVLQSFATIAE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP++ + V D PV++ K L H +PN I++ ED+D
Sbjct: 556 RYQYV--RPVLKKERSLNIV--DGRHPVVE-KVLGHQEY--------IPNSIVMHEDTD- 601
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L VI+AQ+GCFVP + + + D IFTR+GA+D ++
Sbjct: 602 ----ILLITGPNMSGKSTYMRQLALLVIMAQIGCFVPAQSAEMPIFDRIFTRIGASDDLI 657
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + + L
Sbjct: 658 AGQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHKEVKAKTL 717
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT L ++ + D E+VFL+++ G +SYG+ V
Sbjct: 718 FSTHYHELT---------ILDEELLRLRNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHV 768
Query: 1003 AVMAGVPQKVVEAASHAALAMKK---SIGES-FKSSEQRSEFSSLHEEWLKTIVNVSRVD 1058
A +AG+P +++ A+ A+++ +I + + ++Q S FS + E + I + +++
Sbjct: 769 AKIAGLPSGLLQRAATILKALEEHEPTIEKPVIEETQQLSLFSEVSTEEVGVIDQLKKLN 828
Query: 1059 C 1059
Sbjct: 829 L 829
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 174/415 (41%), Gaps = 66/415 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K + +QY ++K+QY D LF+++G FYEL+ DA + L+ +TL+ K + I
Sbjct: 6 KNTPMMEQYLSIKAQYQDAFLFYRLGDFYELFNEDAIKAAQILE--LTLTSRNKNAEEPI 63
Query: 329 SESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + ++ L+ +GYKV EQ+E + T ++ R++V ++TP T +D
Sbjct: 64 PMCGVPYHAASNYIDTLIEQGYKVAICEQVE-----DPKTTKGMVKREVVQLITPGTVMD 118
Query: 384 --GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
G D L A+ + G Y FA+ D + + + D+ + A L
Sbjct: 119 SKGLSAKDNNFLTAVMKTTQG-------YSFAYADLSTGELKTALLEDEDAVLNEAAAL- 170
Query: 442 QVSPKEVIYENRGLCKEAQKALRK---------FSAGSAALELTPAMAVTDFLDASEVKK 492
KEV+ LC E +L++ FS E +T L E
Sbjct: 171 --QTKEVV-----LCSEVPDSLKELLTTRLSVVFSKQETYEENAEFRFLTSGLPEDEKTV 223
Query: 493 LVQLNGYF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY 548
+L Y S + +A+E H + LSR +R G
Sbjct: 224 TGKLLSYLAITQKRSLAHIQQAVEYQPDHSLKMDYYSKFNLELSR-----SIRTG----- 273
Query: 549 KVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+ G L+ LD T+ G RLL+ W+ PL + I R ++V+ L+ +
Sbjct: 274 -------QKHGTLLWLLDETKTAMGARLLKQWLDRPLIQPKKIFARQEMVQSLLDSFFER 326
Query: 608 MVVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL 661
+ L K+ D+ERL+GRV V + L K QQV + L+KG+
Sbjct: 327 ADLQDALTKVYDMERLVGRVAFGNVNGRDLLQL-----KSSLQQVPLIAQLIKGI 376
>gi|87310334|ref|ZP_01092464.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645]
gi|87286833|gb|EAQ78737.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645]
Length = 873
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 193/370 (52%), Gaps = 48/370 (12%)
Query: 652 KVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDF 711
KVFG ++ + + + + + + R P + + + K L+ E A D ++
Sbjct: 471 KVFGYYLEVTNVNRERIPTDYIRKQTLKNAERYITPELKEYEE---KVLSADEKAKDLEY 527
Query: 712 PDY-QNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHR 770
+ Q D LDA+ + Q ++V+ + C+ S++ A R
Sbjct: 528 ELFGQLRDAVQLDAK-----------RIQQTADVLANLDCL---------LSLAELARER 567
Query: 771 PLILPQSKNPAVRQ--DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTL 828
PQ AV + D PVL +K + GG VPND L DS+
Sbjct: 568 NYCRPQVGESAVLRILDGRHPVLDLKEI--------EGGF-VPNDAQL--DSESGF--IG 614
Query: 829 LLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888
L+TGPNM GKST +R L ++AQ+G FVP L + D IF R+GA+D + G+STF
Sbjct: 615 LITGPNMAGKSTYIRQVALISLMAQMGSFVPAREADLGIVDRIFARVGASDELSRGQSTF 674
Query: 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948
+VE TETA +L AT SLVILDE+GRGTST+DG ++A+++ L ++I CR LFATHYH
Sbjct: 675 MVEMTETARILNTATNRSLVILDEIGRGTSTYDGVSLAWSIVEYLHDKIGCRTLFATHYH 734
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008
LT +S P V ++A + D +++FL+++ GA +SYG+ VA +AGV
Sbjct: 735 ELTDLRSSLPGVVNLNVAV---------KEWDDKVIFLHKIVPGAADKSYGIYVARLAGV 785
Query: 1009 PQKVVEAASH 1018
P++V E A
Sbjct: 786 PREVNERAKQ 795
Score = 103 bits (256), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 160/380 (42%), Gaps = 57/380 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK--CRQVGISESG 332
+QY K D +LFF++G FYEL+ DA+ + L +T G+ G
Sbjct: 8 QQYLEAKGVCGDAILFFRMGDFYELFNDDAKTAARVLGMTLTSRDKGENATPMAGFPHHQ 67
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVDGTIGPDAV 391
+D+ + KL+ GY+V +Q+E ++AK ++ R++ +VTP T T D + P
Sbjct: 68 LDNYLGKLIHLGYRVAICDQVENPKEAKG-----IVRREITRIVTPGTLTDDALLEPRES 122
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+ LA G + G A+V+ + R + G A L L +++P E
Sbjct: 123 NYLAAV-ALPGKKETAAEVGVAWVEMSTGRFFSGVF----PTARLADQLARIAPSEC--- 174
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK----LVQLNGYFNGSSSPW 507
L E + S + PA A A EV K + L G+ G
Sbjct: 175 ---LVPEESNVVPTHLHESILMTYRPAWAFGKE-GAGEVLKRHFETMTLEGFGFGD---- 226
Query: 508 SKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK------------------ 549
Q + A G ++ +L +L + PY+
Sbjct: 227 --------QDQLAVCAAGAVLEYLEETQRTSLLHIERLTPYRASSTLEIDEATRRSLELT 278
Query: 550 -VYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
RD R DG L +D CVT G RLL W+ +PL D+E I+ RLD VE L+ +
Sbjct: 279 RTMRDG-RRDGSLLAAIDRCVTVMGSRLLGDWLSNPLTDLEEIHRRLDGVEELVLEPALA 337
Query: 608 MVVAQYLRKLPDLERLLGRV 627
+ + L+++ DLERLL RV
Sbjct: 338 RDLRESLKEVYDLERLLARV 357
>gi|386020150|ref|YP_005938174.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri DSM 4166]
gi|189083218|sp|A4VJN9.2|MUTS_PSEU5 RecName: Full=DNA mismatch repair protein MutS
gi|327480122|gb|AEA83432.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri DSM 4166]
Length = 859
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 168/287 (58%), Gaps = 29/287 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E+ I + E A++ +DVL + A A + ++RP + Q P +R + G
Sbjct: 534 LLEMLIGHLAPLQESAAALAELDVLSNLAERAL--NLDLNRPRFVEQ---PCLRIEQGRH 588
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L PF V ND+ L DD R L++TGPNMGGKST +R T L V
Sbjct: 589 PVVEQVLETPF---------VANDLAL----DDAT-RMLVITGPNMGGKSTYMRQTALIV 634
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LAQ+G FVP C LSL D IFTR+G++D + G STF+VE +ETA++L A+ SLV+
Sbjct: 635 LLAQIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVL 694
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++A+A QL R+ LFATHY LT S P V H++
Sbjct: 695 MDEVGRGTSTFDGLSLAWAAAEQLA-RLRAFTLFATHYFELTVLPESEPVVANVHLSA-- 751
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ ++ +VFL+ + G +SYGL VA +AGVP +V++ A
Sbjct: 752 -------TEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPGEVIQRA 791
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 170/379 (44%), Gaps = 56/379 (14%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QYW +K ++ D L+F+++G FYEL+ DA+ LD ITL+ G+ I +GI
Sbjct: 16 QQYWKLKREHPDQLMFYRMGDFYELFYDDAKKAAALLD--ITLTARGQSAGTAIPMAGIP 73
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAV- 391
+ E +AR K+G E + EQ T+ + R++V ++TP T D + +
Sbjct: 74 FHSAEGYLARLVKLG--ESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEALLDERRD 131
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+LLA G+ ++G + +D A+ R V + L A L ++SP E++
Sbjct: 132 NLLAAVVGD------EKLFGLSVLDIASGRFSVQELK---GWETLLAELERLSPAELLIP 182
Query: 452 N---RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ------LNGYF-- 500
+ +GL E ++ +R+ A DF S K L Q L G+
Sbjct: 183 DDWPQGLPLEKRRGVRR-------------RAPWDFDRDSAFKSLCQQFSTQDLKGFGCE 229
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD-- 558
N + + + + +AL L S + D V+ +G R L +D
Sbjct: 230 NLTLAIGAAGCLLAYAKETQRTALPHLRSLRHERLDDTVILDG------ASRRNLELDVN 283
Query: 559 -----GQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
TL +D C T+ G RLL W+ PL++ E + R D + L+++ +
Sbjct: 284 LAGGRENTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILEARQDSITCLLEHYRFEQLQP 343
Query: 612 QYLRKLPDLERLLGRVKAR 630
Q L+ + DLER+L R+ R
Sbjct: 344 Q-LKDIGDLERILARIGLR 361
>gi|163848498|ref|YP_001636542.1| DNA mismatch repair protein MutS [Chloroflexus aurantiacus J-10-fl]
gi|222526432|ref|YP_002570903.1| DNA mismatch repair protein MutS [Chloroflexus sp. Y-400-fl]
gi|189030708|sp|A9WFZ9.1|MUTS_CHLAA RecName: Full=DNA mismatch repair protein MutS
gi|254766621|sp|B9LB04.1|MUTS_CHLSY RecName: Full=DNA mismatch repair protein MutS
gi|163669787|gb|ABY36153.1| DNA mismatch repair protein MutS [Chloroflexus aurantiacus J-10-fl]
gi|222450311|gb|ACM54577.1| DNA mismatch repair protein MutS [Chloroflexus sp. Y-400-fl]
Length = 966
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 140/241 (58%), Gaps = 18/241 (7%)
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P +R D VL+IK HP + NDI D D + L++TGPNM GK
Sbjct: 663 QPRLRTDR---VLRIKQGRHPVVERTLSEPFIGNDI----DLDGEQAQILIITGPNMAGK 715
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST LR L ++AQ+G FVP + + L D IFTR+GA D I TG+STF+VE TETA++
Sbjct: 716 STFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMTETAAL 775
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYHPLTKEFAS 956
L ++T SL+ILDE+GRGTST+DG AIA AV + + R+ CR LFATHYH L
Sbjct: 776 LMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHDHPRLGCRTLFATHYHELIALERE 835
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P V HMA + D +VFL+ L G SYG+ VA +AG+P +V+ A
Sbjct: 836 LPRVRNYHMAAVER---------DGRVVFLHELRPGGADRSYGIHVAELAGIPPEVIRRA 886
Query: 1017 S 1017
S
Sbjct: 887 S 887
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 36/210 (17%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
++ A +QY +K + D +L F+ G FYE ++ DA++ + LD +T +++
Sbjct: 5 ELHAWYRQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPK 64
Query: 327 ----------GISESGIDDAVEKLVARGYKVGRIEQLETSEQAK---------------A 361
G+ +D V +L+ARGY+V EQL +E +
Sbjct: 65 DQQKLYAPMAGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPV 124
Query: 362 RHTNSVISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+ ++ R +V V+TP T +D + PD +L A+ + G V G A+ D +
Sbjct: 125 ESSGKMVQRAIVRVITPGTVIDPAMLPDRTNNYLAAVIV-----EQGKV--GLAYADLST 177
Query: 420 LRVWVGTINDDASCAALGALLMQVSPKEVI 449
D + L A L ++SP EV+
Sbjct: 178 GEFAAAEFTDARALMQLQAELARLSPAEVL 207
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD T+ G RLLR WI PL +E + R V L+ + + V L LPD+ER
Sbjct: 364 LDRTCTAMGARLLRRWITQPLIVIEPLQVRQHAVARLVAETMARLEVRSALADLPDMERA 423
Query: 624 LGRV 627
L R+
Sbjct: 424 LNRI 427
>gi|387813627|ref|YP_005429109.1| methyl-directed mismatch repair protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338639|emb|CCG94686.1| methyl-directed mismatch repair protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 874
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 157/288 (54%), Gaps = 30/288 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQ-SKNPAVRQDNGG 788
++E E+ + + A++ +DVL +FA A+ P+ + P + G
Sbjct: 530 VLETVAEQLAPLQDAAQALAELDVLSNFAERATSLR------FTAPEFTDQPGFDVEEGR 583
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+ + L PF VPN++L+ D R L++TGPNMGGKST +R L
Sbjct: 584 HPVVEQLLDEPF---------VPNNLLM-----DTRRRMLVITGPNMGGKSTYMRQAALI 629
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
+LA G FVP VL D IFTR+G++D I G STF+VE TETA++L AT+ SLV
Sbjct: 630 ALLAYTGSFVPANRAVLGPVDRIFTRMGSSDDIAGGRSTFMVEMTETANILHNATEHSLV 689
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DE+GRGTSTFDG ++A+A L + I C LFATHY LT+ H H+
Sbjct: 690 LMDEVGRGTSTFDGLSLAWATAEHLAKNIRCYTLFATHYFELTQLADDLEHAVNVHLTA- 748
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ D +VFL+ + G +SYGLQVA +AGVPQ V+ A
Sbjct: 749 --------TEHDDSIVFLHNVHDGPASQSYGLQVAKLAGVPQDVIRNA 788
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 60/389 (15%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKC 323
L K + +QY +K ++ + ++F+++G FYEL+ DA+ + LD +T SG
Sbjct: 4 LSKHTPMMQQYLKIKGEHPNEMVFYRMGDFYELFYDDAKKAAELLDITLTARGQSGGNPI 63
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + + ++V G + EQ+ +K + RK+V +VTP T D
Sbjct: 64 PMAGVPFHSAEGYIARMVRAGQSIAICEQIGDPATSKG-----PVERKVVRIVTPGTLSD 118
Query: 384 GTIGPDAV-HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D +LLA + +GFA +D ++ R V + S AL L +
Sbjct: 119 EAFLEDRRDNLLA------AIYHHKEQFGFASLDISSGRFAVSELE---SLEALQGELQR 169
Query: 443 VSPKEVIYEN--------RGLCKEAQKALRKFSAGSAALELTPAMAVTDF---------L 485
+ P E++ G ++ F + +A +T + V D L
Sbjct: 170 LRPAEILISEDFPYTDILEGFTGVRRQGPWLFESDTALRVITQQLQVRDLTGFGCEDLTL 229
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDI 545
L+Q ++ P + L + D ++ SR RN +I
Sbjct: 230 AVCAAGCLLQYAKETQRTALPHIRKLTRERRED------AVILDAASR-------RNLEI 276
Query: 546 LPYKVYRDCLRMDGQ----TLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
D M GQ +D T+ G R LR W+ PL+DVE + R V L+
Sbjct: 277 -------DTNLMGGQQHTLAWVMDRTATAMGARELRRWLNRPLRDVERVRQRQQAVSALL 329
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
V L+++ D+ER+L RV R
Sbjct: 330 DGFH-YEPVHDLLKRVGDIERILARVALR 357
>gi|340354919|ref|ZP_08677615.1| DNA mismatch repair protein MutS [Sporosarcina newyorkensis 2681]
gi|339622933|gb|EGQ27444.1| DNA mismatch repair protein MutS [Sporosarcina newyorkensis 2681]
Length = 855
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 39/313 (12%)
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD-NGGPVLKIK 794
E+ + ++ +S +DVL +FAV + +N +R + + G L I+
Sbjct: 527 EEVQRIQKLASVVSELDVLLAFAVVSE---------------RNRYIRPEFHNGRALDIQ 571
Query: 795 GLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
HP N L +PN L + S+ LL+TGPNM GKST +R L V++AQ
Sbjct: 572 NGRHPVVEKMMNHSLYIPNSCELADYSN-----MLLITGPNMSGKSTFMRQVALTVVMAQ 626
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+GCFVPCE VL + D IFTR+GA D + +G+STF++E E+ L AT SL++ DE+
Sbjct: 627 IGCFVPCEKAVLPITDQIFTRIGAADDVASGQSTFMMEMMESQYALAHATSRSLLLFDEI 686
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG A+A A+ + E++ LF+THYH LTK + H+A
Sbjct: 687 GRGTSTYDGMALAQAMMEHIHEQVGANTLFSTHYHELTKLEDVLARLLNVHVAA------ 740
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
+ + ++VFL+++ GA SYG+ VA +AG+P ++VE A K + + F+
Sbjct: 741 ---KEQNGKVVFLHKVLPGAADRSYGIHVAELAGLPAELVERA--------KKLLQRFEE 789
Query: 1034 SEQRSEFSSLHEE 1046
+E +S+ E+
Sbjct: 790 ESAANESTSVSEQ 802
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 154/375 (41%), Gaps = 61/375 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K QY D LFF++G FYE++ DA L+ +T G ++ GI
Sbjct: 9 QQYLQIKEQYTDAFLFFRLGDFYEMFFEDAVNASSILEITLTSRDSGAKDRIPMCGIPYH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG-TIGPDA 390
+E L+ G+KV EQ+E R ++ R++V V+TP T +G TI +A
Sbjct: 69 SATGYIETLIQNGHKVAICEQME-----DPRSVKGIVKREVVKVITPGTLTEGKTIDTEA 123
Query: 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI- 449
H + + G + A++D V I + + +L A + + KE++
Sbjct: 124 NHFIGAIDS-----LGDQRFALAYLDVGTGEGKVELI--EGTERSLLAEIESLGMKEIVV 176
Query: 450 -----------YENRGLC-----KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
+ENR + E ++ K + G EL A L
Sbjct: 177 DQTLHLTLHEMFENREIMLSIEDAEQNASIAKDTYGHLPNELQEACNKLQ-------SYL 229
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
+++ G P+ ++ D S + +L L +R+G
Sbjct: 230 MRMQKMVFGHIRPFV-----YIEKDAKLSIDANSMRNLE---LVQTIRSG---------- 271
Query: 554 CLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
+ +G + LD VT+ G R LR WI PL + I RL+ V L+ + + +
Sbjct: 272 --KKEGTLFWVLDETVTAMGARKLRMWIHQPLAQRKAIEERLETVSNLVDEFFLREELVE 329
Query: 613 YLRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 330 ELKNVYDLERLAGRI 344
>gi|50554795|ref|XP_504806.1| YALI0F00154p [Yarrowia lipolytica]
gi|49650676|emb|CAG77608.1| YALI0F00154p [Yarrowia lipolytica CLIB122]
Length = 887
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 209/413 (50%), Gaps = 48/413 (11%)
Query: 618 PDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHI 677
PD+E L KAR++A + +F S+ L + MD + E H
Sbjct: 439 PDMEEGLNDTKARLEACQ------------DRMKDIFASVSDELGMEMDKKLKF--ENHH 484
Query: 678 IPSLSRIFKPPIFDGS--DGLDKF--LTQFEAAIDSDFPDYQN--HDVTDLDAETLSI-- 729
+ S F+ D S GL KF L +A I + ++ ++ TDL E I
Sbjct: 485 VHGWS--FRLTRTDASCLRGLSKFKELATLKAGIIFTTNELRSLSNEFTDLSQEYKKIQA 542
Query: 730 -LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGG 788
L + IE A + ++ C VL V S +S A+ R I P V D+
Sbjct: 543 RLAKEIIEIACSYCPLLE--RCSAVLGQLDVLTSFASVAIERNYIRP----TVVDSDDRK 596
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
+L HP ++ +PND+ LG+DS + L++TGPNMGGKST +R +
Sbjct: 597 CILTASR--HPCLEAQDTF--IPNDVHLGQDS----KKFLVITGPNMGGKSTFIRQVGVI 648
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V++ Q+GCFVPC+ +S+ D I R+GA D + G STF+ E ET+++L+ AT SL+
Sbjct: 649 VLMNQIGCFVPCDRAEISIFDCILARVGAGDSQLKGLSTFMSEMLETSAILKSATDKSLI 708
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMAC 967
I+DELGRGTST+DG+ +A+A+ +V ++NC +FATH+H LT+ HP V H+A
Sbjct: 709 IIDELGRGTSTYDGFGLAWAISEHIV-KMNCFSMFATHFHELTELAKEHPDRVDNLHVAA 767
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+S++ + LY++ G +SYG VA + P KVV A A
Sbjct: 768 HVGESSDD-------ITLLYKVVPGVSSKSYGTHVAEVVKFPTKVVNMAKRKA 813
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 60/319 (18%)
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G AFVD + V D+ + L +LL+Q+ KE I + + ++A
Sbjct: 147 GLAFVDLNNHVLGVSEFEDNECMSNLESLLIQLDVKECITSDDKVKAVIERA-------- 198
Query: 471 AALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISH 530
++ A + + +A+EV+ L+ P S L +++ +G +L LI +
Sbjct: 199 ---GVSRTDAKSSWFNANEVES--NLDNLLAEKLQPTSPELS--LKNALG--SLACLIKY 249
Query: 531 LSRLMLDDVLRNGDI-LPYKVYRDCLRMDGQTL--------------------YLDSCVT 569
LS + D +G + +++D L L+ C T
Sbjct: 250 LS--LTSDASNHGAFTIKTHTLSQYMKLDASALKALHLMPSVKDSTKSSSLYGLLNVCKT 307
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
++G R L W+ PL D + I R ++VE + +S+++ + Q L +PDL RL +
Sbjct: 308 ATGSRTLAQWVKQPLMDKQEIEKRHEIVE-IFTSSDLLESIRQNLSTIPDLNRLTRKFMR 366
Query: 630 RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPI 689
+ + +V + Q V + GLR A L+ E + L I
Sbjct: 367 QAASLEDVVR-------VYQMVATLPHIASGLRAAQSELL----EETFLTQLDSIIT--- 412
Query: 690 FDGSDGLDKFLTQFEAAID 708
GL KF E+ ID
Sbjct: 413 -----GLQKFEELVESTID 426
>gi|338708198|ref|YP_004662399.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336295002|gb|AEI38109.1| DNA mismatch repair protein MutS [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 896
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 160/289 (55%), Gaps = 27/289 (9%)
Query: 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
+E I +A + + I A C D L V ++ A+ I P DN
Sbjct: 556 LETLITQALEQRDSIAA--CADALARLDVATGLAECAVQGNWIRPDV-------DNSVNF 606
Query: 791 LKIKGLWHPF---ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
+KG HP AL ++G V NDI L + R L+TGPNMGGKST LR L
Sbjct: 607 DIVKG-RHPVVEAALSKSGERFVANDIDLNPAN-----RLWLVTGPNMGGKSTFLRQNAL 660
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+LAQ G FVP E + L D +F+R+GA+D + G STF+VE ETA++L +AT+ S
Sbjct: 661 LAVLAQAGSFVPAEKARIGLVDRLFSRVGASDNLARGRSTFMVEMVETAAILAQATKKSF 720
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
VILDE+GRGTST+DG AIA+AV + + CR LFATHYH LT+ + P ++L H+
Sbjct: 721 VILDEVGRGTSTYDGLAIAWAVVEAIHDMNECRCLFATHYHELTQLASRLPTLSLHHVRA 780
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
KGD L+ L+ + GA SYG++VA +AG+P V+ A
Sbjct: 781 -------KEWKGD--LILLHEMAEGAADRSYGIEVARLAGLPPVVLSRA 820
Score = 62.4 bits (150), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG--VGKCRQV-GISES 331
+QY+ +K Q D LLF+++G F+EL+ DA+ LD +T G +G+ + G+
Sbjct: 30 EQYYELKRQVQDCLLFYRMGDFFELFFEDAKRASAILDIALTSRGAHIGEAIPMCGVPAH 89
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKAR-HTNSVISRKLVNVVTPSTTVD 383
++ + +L+ G +V +Q+ET QAK R + +++ R ++ VVT T +
Sbjct: 90 SVESYLARLIKAGCRVAIADQIETPAQAKKRGGSKALVKRAIIRVVTAGTLTE 142
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 12/151 (7%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D VT +G RLL + I PL D++ I+ RLD+VE KNS + + + L+ PD+ R+
Sbjct: 315 VDYLVTGAGTRLLTADISAPLMDIDRIHQRLDLVELFFKNSLLREEIRERLKGSPDIARV 374
Query: 624 LGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK---GLRIAMDLLMLMHKEGHIIPS 680
LGR+ A + L G LK ++ SL+K + LL G ++
Sbjct: 375 LGRLVADRGTPRDLSLLRDG---LKGAFSLYESLIKLDDRPSLLEQLLPSFRGHGALVDL 431
Query: 681 LSR--IFKPPIFDGSDGLDKFLTQ-FEAAID 708
L R + +PPI D S G F+ + ++ A+D
Sbjct: 432 LERALVEQPPI-DASQG--NFIAKGYDTALD 459
>gi|440713279|ref|ZP_20893880.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SWK14]
gi|436441745|gb|ELP34937.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SWK14]
Length = 888
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 158/279 (56%), Gaps = 36/279 (12%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP--- 799
EV +AI+ DV+ S A A+ RP + S VL+I+G HP
Sbjct: 557 EVANAIAMTDVVASLAEVAAQHHWV--RPTLTDDS------------VLRIEGGRHPVLD 602
Query: 800 --FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
A GE VPND + ++ LL+TGPNM GKST +R L +LAQ G F
Sbjct: 603 VTMAQGEF----VPNDCIQSPETG----MILLITGPNMAGKSTYIRQVALITLLAQTGSF 654
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + +AD IF R+GA+D + G+STF+VE ETA +L AT SLVILDE+GRGT
Sbjct: 655 VPATSAEIGIADRIFARVGASDELSRGQSTFMVEMVETARILNTATSRSLVILDEIGRGT 714
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
ST+DG ++A+A+ L E+I R LFATHYH L + P V +++ A K
Sbjct: 715 STYDGLSLAWAITEHLHEQIGARTLFATHYHELAALQETLPRVA--NLSVAVK------- 765
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ E+VFL+R+ G+ +SYG+QVA +AG+P +V E A
Sbjct: 766 EWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERA 804
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 147/395 (37%), Gaps = 71/395 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-----CRQVGIS 329
+QY K D LLFF++G FYEL+ DA++ L +TL+ K G
Sbjct: 3 RQYHEAKEACGDALLFFRMGDFYELFLDDAKVAAGIL--GLTLTSRDKDSENPTAMAGFP 60
Query: 330 ESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-GTIGP 388
+D ++KL+ G++ EQ+E + AK ++ R++ VV+ T D G + P
Sbjct: 61 HHQLDQYLQKLIRAGFRAAVCEQVEDPKAAKG-----LVRREITRVVSAGTLTDEGLLDP 115
Query: 389 DAVHLLAI-------------KEG--NCGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
+ LA KE P G VV G A+ + ++ R G
Sbjct: 116 KEPNYLAAVFAPSQKAREKAQKEAAKTNDPSGGDVV-GIAWAELSSGRFEAGVF----PR 170
Query: 434 AALGALLMQVSPKEVIY-ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK 492
A L L ++ P EV++ E+ A ++A A A A V
Sbjct: 171 ARLDDELARIGPAEVLHCEDDASVHPDSTATWSWTA-RPAWSYAAADAEKSLCKQLSVAN 229
Query: 493 LVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR------------------- 533
L L NG D+ A G ++ +L
Sbjct: 230 LEGLGFEDNG---------------DVAIRAAGAVLCYLKETQRGSLDHFRSLTCHNRSP 274
Query: 534 -LMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINN 592
L +D R + + R R +D VT G RLL + PL D + I
Sbjct: 275 VLQIDAATRRS-LEITRTMRTGSREGALLGVIDRTVTPMGSRLLADHLAAPLIDADAITY 333
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
R D V+ ++N+ + + L DL RLL RV
Sbjct: 334 RTDAVDEFVRNNNLRSDIRTVLGDTYDLTRLLARV 368
>gi|407768113|ref|ZP_11115492.1| DNA mismatch repair protein MutS [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288826|gb|EKF14303.1| DNA mismatch repair protein MutS [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 907
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 170/307 (55%), Gaps = 29/307 (9%)
Query: 725 ETLSILIELFIEKASQWSEVIHAIS-CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVR 783
+ L++ +ELF + E AI+ C L V+A+++ A + I P +
Sbjct: 553 QALALELELFDSLVTGVLEHADAIARCAQALAGLDVSAALAELARDQVCIRPTIDDSLA- 611
Query: 784 QDNGGPVLKIKGLWHPF---ALGENGGLP-VPNDILL-GEDSDDCLPRTLLLTGPNMGGK 838
I+G HP AL ENG P V ND L GE S L+TGPNM GK
Sbjct: 612 -------FDIRGGRHPVVEAALRENGDSPFVANDCRLEGEQS------LWLITGPNMAGK 658
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST LR L +LAQ+G FVP E + + D +F+R+GA D + G STF+VE ETA++
Sbjct: 659 STFLRQNALIAVLAQIGAFVPAETAHIGVIDRLFSRVGAADDLARGRSTFMVEMVETAAI 718
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
L +A+ SLVILDE+GRGT+TFDG +IA+AV L E CR LFATHYH LT A
Sbjct: 719 LNQASDRSLVILDEIGRGTATFDGLSIAWAVVENLHEVNKCRGLFATHYHELTALAAK-- 776
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
L H++C ++ + E+VFL+ + +G+ SYG+ VA +AG+P+ V++ A
Sbjct: 777 ---LAHLSC----HTMLIKEWQGEVVFLHEVGAGSADRSYGIHVAQLAGLPKPVIKRAEQ 829
Query: 1019 AALAMKK 1025
++K
Sbjct: 830 VLKTLEK 836
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 155/382 (40%), Gaps = 61/382 (15%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISESG 332
Q+ +K QY D LLF+++G FYEL+ DA + LD +T G + ++ G+
Sbjct: 28 QFLEIKEQYQDCLLFYRMGDFYELFFDDAVKAAEALDIALTKRGKHQGNEIPMAGVPVHS 87
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
+ +++L+ +G++V EQ+E +AK R SV+ R +V ++TP T + ++ H
Sbjct: 88 HETYLQRLIRKGFRVAVCEQMEDPAEAKKRGAKSVVKRGVVRLITPGTLTEDSLLDARRH 147
Query: 393 --LLAIKE--GNCGP---------------DNGSVVYGFAFVDCAALRVWVGTINDDASC 433
L A+ E G G D G + A +D L + +N
Sbjct: 148 NYLAAVSEVRGKVGLAWLDMSTGDFYVQPCDMGGLPAALARLDAGELLISDKLLNRSEMF 207
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFS--------AGSAALELTPAMAVTDFL 485
++P+ +R + AQ L+K G EL+ A A+ D++
Sbjct: 208 DIYAEYKNVITPQPA---SRFDAENAQLRLKKLYEVAALDAFGGFEIAELSAAGALIDYV 264
Query: 486 DASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDI 545
D ++ ++ +L + P A M+ D L R G +
Sbjct: 265 DLTQKGQMPRL-------APPQRMAAGAAMEIDAATR------RSLELTQTQSGERKGSL 311
Query: 546 LPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
L +D T +G RLL + + PL D IN RLD+V Y
Sbjct: 312 LS---------------VIDRTRTGAGARLLAARLSAPLTDAGTINKRLDLVYYFHDRDA 356
Query: 606 VVMVVAQYLRKLPDLERLLGRV 627
+ + L + PD+ER L R+
Sbjct: 357 LRSDLRAALGECPDIERALSRL 378
>gi|313201553|ref|YP_004040211.1| DNA mismatch repair protein muts [Methylovorus sp. MP688]
gi|312440869|gb|ADQ84975.1| DNA mismatch repair protein MutS [Methylovorus sp. MP688]
Length = 859
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 162/296 (54%), Gaps = 32/296 (10%)
Query: 746 HAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN 805
HA++ +DV+ +F A + + P+ A Q G ++ L PF
Sbjct: 554 HAVAELDVIATFVERAQALN------YVQPEFTAEAGIQITAGRHPVVEQLAQPF----- 602
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
+ ND+ L + LL+TGPNMGGKST +R T L V+LA GCFVP + +
Sbjct: 603 ----IANDVQLTPYR-----QLLLITGPNMGGKSTYMRQTALIVLLAHCGCFVPAKAARI 653
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
D IFTR+GA+D + G STF+VE TETA++L AT+ SLV+LDE+GRGTSTFDG ++
Sbjct: 654 GQVDRIFTRIGASDDLAGGRSTFMVEMTETANILHNATEYSLVLLDEIGRGTSTFDGLSL 713
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVF 985
A+AV RQL+ER LFATHY LT+ H+ N +VF
Sbjct: 714 AWAVARQLLERNRSYTLFATHYFELTRLVEDFKQAANVHLDAVEHGNG---------IVF 764
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
L+ + G +SYGLQVA +AG+P+ VV AA + +++ ++ ++ Q FS
Sbjct: 765 LHAVQEGPASQSYGLQVAQLAGIPRSVVNAAKRKLVQLEQ---QNIQAGPQGDMFS 817
Score = 94.0 bits (232), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 166/379 (43%), Gaps = 63/379 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---CRQVGISES 331
+QY +K+QY D+LLF+++G FYEL+ DAE + L +T G R G+
Sbjct: 21 RQYLGIKAQYPDMLLFYRMGDFYELFHDDAEKAARLLGITLTKRGASNGEPIRMAGVPYH 80
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+ + KL G V EQ+ ++K + R++ ++TP T D + D
Sbjct: 81 AAEQYLAKLAKLGEAVAICEQIGDPAKSK-----GPVDRQVTRILTPGTLTDSALLDDTR 135
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L+A+ G + G A ++ AA ++ + + + L L ++SP E++
Sbjct: 136 DNLLVAVSAGEG-------IVGLARINLAAGQLVLTEV----APGLLAQELERISPAELL 184
Query: 450 ----YENRGL----CKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVKKLVQLNG- 498
Y++ + C + + A +F SA LT D +++ + + G
Sbjct: 185 LADGYQHPSIEALKCPKKRLAPWQFDLDSATQLLTQQFNTHDLAGFGCADLTQAISAAGA 244
Query: 499 ------YFNGSSSPWSKALENVMQHD--IGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
+ SS P AL +V Q I F A + L +D LR G+ P
Sbjct: 245 LLDYVRHTQRSSLPHINAL-SVEQSGEYIQFDA-----ASRRNLEIDQTLR-GEPAP--- 294
Query: 551 YRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
TLY L++C T+ G RLLR W+ HPL+D I RL+ V L++ + +
Sbjct: 295 ----------TLYSLLNTCRTAMGARLLRHWLHHPLRDHAAIQARLEAVAALLQG-DALQ 343
Query: 609 VVAQYLRKLPDLERLLGRV 627
+ L + D+ER+ RV
Sbjct: 344 APRKLLNNIGDIERITARV 362
>gi|257870587|ref|ZP_05650240.1| DNA mismatch repair protein mutS [Enterococcus gallinarum EG2]
gi|257804751|gb|EEV33573.1| DNA mismatch repair protein mutS [Enterococcus gallinarum EG2]
Length = 850
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 197/361 (54%), Gaps = 40/361 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE S+ +E LF+E + + I AIS +DVL+SFA A
Sbjct: 498 PELKKLETVILEAEEKSVDLEYQLFLEVREEVKKSILRLQKLAKAISAVDVLQSFATIAE 557
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDD 822
RP++ + V D PV++ K L H +PN I++ ED+D
Sbjct: 558 RYQYV--RPVLKKERSLNIV--DGRHPVVE-KVLGHQEY--------IPNSIVMHEDTD- 603
Query: 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIM 882
LL+TGPNM GKST +R L VI+AQ+GCFVP + + + D IFTR+GA+D ++
Sbjct: 604 ----ILLITGPNMSGKSTYMRQLALLVIMAQIGCFVPAQSAEMPIFDRIFTRIGASDDLI 659
Query: 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLL 942
G+STF+VE E L+ AT +SL++ DELGRGT+T+DG A+A A+ + + + + L
Sbjct: 660 AGQSTFMVEMMEANQALRHATPNSLILFDELGRGTATYDGMALAQAIIEYIHKEVKAKTL 719
Query: 943 FATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQV 1002
F+THYH LT L ++ + D E+VFL+++ G +SYG+ V
Sbjct: 720 FSTHYHELT---------ILDEELLRLRNIHVGAVEKDGEVVFLHKMMEGPADKSYGIHV 770
Query: 1003 AVMAGVPQKVVEAASHAALAMKK---SIGES-FKSSEQRSEFSSLHEEWLKTIVNVSRVD 1058
A +AG+P +++ A+ A+++ +I + + ++Q S FS + E + I + +++
Sbjct: 771 AKIAGLPSGLLQRAATILKALEEHEPTIEKPVIEETQQLSLFSEVSTEEVGVIDQLKKLN 830
Query: 1059 C 1059
Sbjct: 831 L 831
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 174/415 (41%), Gaps = 66/415 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGI 328
K + +QY ++K+QY D LF+++G FYEL+ DA + L+ +TL+ K + I
Sbjct: 8 KNTPMMEQYLSIKAQYQDAFLFYRLGDFYELFNEDAIKAAQILE--LTLTSRNKNAEEPI 65
Query: 329 SESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + ++ L+ +GYKV EQ+E + T ++ R++V ++TP T +D
Sbjct: 66 PMCGVPYHAASNYIDTLIEQGYKVAICEQVE-----DPKTTKGMVKREVVQLITPGTVMD 120
Query: 384 --GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
G D L A+ + G Y FA+ D + + + D+ + A L
Sbjct: 121 SKGLSAKDNNFLTAVMKTTQG-------YSFAYADLSTGELKTALLEDEDAVLNEAAAL- 172
Query: 442 QVSPKEVIYENRGLCKEAQKALRK---------FSAGSAALELTPAMAVTDFLDASEVKK 492
KEV+ LC E +L++ FS E +T L E
Sbjct: 173 --QTKEVV-----LCSEVPDSLKELLTTRLSVVFSKQETYEENAEFRFLTSGLPEDEKTV 225
Query: 493 LVQLNGYF----NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY 548
+L Y S + +A+E H + LSR +R G
Sbjct: 226 TGKLLSYLAITQKRSLAHIQQAVEYQPDHSLKMDYYSKFNLELSR-----SIRTG----- 275
Query: 549 KVYRDCLRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+ G L+ LD T+ G RLL+ W+ PL + I R ++V+ L+ +
Sbjct: 276 -------QKHGTLLWLLDETKTAMGARLLKQWLDRPLIQPKKIFARQEMVQSLLDSFFER 328
Query: 608 MVVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGL 661
+ L K+ D+ERL+GRV V + L K QQV + L+KG+
Sbjct: 329 ADLQDALTKVYDMERLVGRVAFGNVNGRDLLQL-----KSSLQQVPLIAQLIKGI 378
>gi|410948910|ref|XP_003981170.1| PREDICTED: DNA mismatch repair protein Msh3 [Felis catus]
Length = 1126
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 164/307 (53%), Gaps = 28/307 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + + K
Sbjct: 791 VLDCSAEWLDFL-EDFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGNYCRPTLQEERK 847
Query: 779 NPAVRQDNGGPVLKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNM 835
+ IK HP LGE VPN L DS+ R +++TGPNM
Sbjct: 848 ------------IMIKNGRHPVIDVLLGEQDQY-VPNSTNLSGDSE----RVMIITGPNM 890
Query: 836 GGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895
GGKS+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G+STF+ E T+T
Sbjct: 891 GGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDT 950
Query: 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955
A ++++AT SLVILDELGRGTST DG AIAYA ++ + LF THY P+ +
Sbjct: 951 AEIIKQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIKDVKSLTLFVTHYPPVCELEK 1010
Query: 956 SH-PHVTLQHMACAFKSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQ 1010
S+ V HM + G+++ + FLY++T G SYGL VA +A VP+
Sbjct: 1011 SYLQQVGNYHMGFLVNEDESKEDPGEEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPE 1070
Query: 1011 KVVEAAS 1017
++++ A+
Sbjct: 1071 EILKKAA 1077
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 178/421 (42%), Gaps = 69/421 (16%)
Query: 256 DKRT--LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDW 313
+KRT +Y P E QY +K Q D +L + G Y + DAE+ +EL+
Sbjct: 213 NKRTKSIYTPLEL---------QYIELKQQQKDAILCVECGYKYRFFGEDAEVAARELNI 263
Query: 314 KITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKL 372
L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SRKL
Sbjct: 264 YCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSLFSRKL 321
Query: 373 VNVVTPSTTVDGTIGP-----DAVH------------LLAI---KEGNCGPDNGSVVYGF 412
+ T ST + + P DA++ LL I +E G++ G
Sbjct: 322 TALYTKSTLIGEDVNPLVKLDDAINVDEIVTDNSTNFLLCICEDQENVKDKKKGNIFIGM 381
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAG--- 469
V A V + D AS L ++ + P E++ + L ++ + + + +A
Sbjct: 382 VGVQPATGEVVFDSFQDSASRLELETRILCLQPVELLLPSH-LSEQTEMLIHRATAARVR 440
Query: 470 ----------SAALELTPAM-AVTDFL--DASEVKKLVQLNGYFNGSSSPWSKA------ 510
+ E + A AVT+F D +++ +G N +
Sbjct: 441 DDRIRVERMDNMYFEYSHAFQAVTEFYAKDVVDIQGSQSFSGIINLEKTVICSLAAIIRY 500
Query: 511 -----LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-L 564
LE V+ F L G + ++ + LRN +I+ + ++ G L+ L
Sbjct: 501 LKEFNLEKVLSKPKNFKQLSGEMEFMT--INGTTLRNLEIIQNQTD---MKTKGSLLWVL 555
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLERL 623
D TS GKR L+ W+ PL + IN RLD V E L S V + +LRKLPD+ER
Sbjct: 556 DHTKTSFGKRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERG 615
Query: 624 L 624
L
Sbjct: 616 L 616
>gi|421611501|ref|ZP_16052641.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SH28]
gi|408497744|gb|EKK02263.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SH28]
Length = 891
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 158/279 (56%), Gaps = 36/279 (12%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP--- 799
EV +AI+ DV+ S A A+ RP + S VL+I+G HP
Sbjct: 560 EVANAIAMTDVVASLAEVAAQHHWV--RPTLTDDS------------VLRIEGGRHPVLD 605
Query: 800 --FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
A GE VPND + ++ LL+TGPNM GKST +R L +LAQ G F
Sbjct: 606 VTMAQGEF----VPNDCIQSPETG----MILLITGPNMAGKSTYIRQVALITLLAQTGSF 657
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + +AD IF R+GA+D + G+STF+VE ETA +L AT SLVILDE+GRGT
Sbjct: 658 VPATSAEIGIADRIFARVGASDELSRGQSTFMVEMVETARILNTATSRSLVILDEIGRGT 717
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
ST+DG ++A+A+ L E+I R LFATHYH L + P V +++ A K +
Sbjct: 718 STYDGLSLAWAITEHLHEQIGARTLFATHYHELAALQETLPRVA--NLSVAVKEWQD--- 772
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
E+VFL+R+ G+ +SYG+QVA +AG+P +V E A
Sbjct: 773 ----EVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERA 807
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 149/400 (37%), Gaps = 71/400 (17%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-----CR 324
M+ +QY K D LLFF++G FYEL+ DA++ L +TL+ K
Sbjct: 1 MTPMMRQYHEAKEACGDALLFFRMGDFYELFLDDAKVAAGIL--GLTLTSRDKDSENPTA 58
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G +D ++KL+ G++ EQ+E + AK ++ R++ VV+ T D
Sbjct: 59 MAGFPHHQLDQYLQKLIRAGFRAAVCEQVEDPKAAKG-----LVRREITRVVSAGTLTDE 113
Query: 384 GTIGPDAVHLLAI-------------KEG--NCGPDNGSVVYGFAFVDCAALRVWVGTIN 428
G + P + LA KE P G VV G A+ + ++ R G
Sbjct: 114 GLLDPKEPNYLAAVFAPSQKAREKAQKEAAKTNDPSGGDVV-GIAWAELSSGRFEAGVF- 171
Query: 429 DDASCAALGALLMQVSPKEVIY-ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA 487
A L L ++ P EV++ E+ A ++A A A A
Sbjct: 172 ---PRARLDDELARIGPAEVLHCEDDASVHPDPTATWSWTA-RPAWSYAAADAEKSLCKQ 227
Query: 488 SEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR-------------- 533
V L L NG D+ A G ++ +L
Sbjct: 228 LSVANLEGLGFEDNG---------------DVAIRAAGAVLCYLKETQRGSLDHFRSLTC 272
Query: 534 ------LMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDV 587
L +D R + + R R +D VT G RLL + PL D
Sbjct: 273 HNRSPVLQIDAATRRS-LEITRTMRTGSREGALLGVIDRTVTPMGSRLLADHLAAPLIDA 331
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ I R D V+ ++N+ + + L DL RLL RV
Sbjct: 332 DAITYRTDAVDEFVRNNNLRSDIRTVLGDTYDLTRLLARV 371
>gi|323691987|ref|ZP_08106235.1| DNA mismatch repair protein MutS [Clostridium symbiosum WAL-14673]
gi|323503910|gb|EGB19724.1| DNA mismatch repair protein MutS [Clostridium symbiosum WAL-14673]
Length = 880
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 165/283 (58%), Gaps = 30/283 (10%)
Query: 737 KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
+ + E HA++ DVL S +V A ++ P++ N ++ IK
Sbjct: 536 EVKRIQETAHAVALTDVLTSLSVVAVRNNYV-----------KPSI---NEKGIIHIKNG 581
Query: 797 WHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
HP +GG+ V ND L D+ R ++TGPNM GKST +R T L ++AQ+G
Sbjct: 582 RHPVVEQMMSGGMFVANDTYL----DNGKNRVSIITGPNMAGKSTYMRQTALITLMAQVG 637
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP + + L D IFTR+GA+D + +G+STF+VE TE A++L+ AT+ SL+ILDE+GR
Sbjct: 638 SFVPADEADIGLCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRSSLLILDEIGR 697
Query: 916 GTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GTSTFDG +IA+AV + + + + LFATHYH LT+ + V + A K
Sbjct: 698 GTSTFDGLSIAWAVVEYISNTKLLGAKTLFATHYHELTELEGTMSGV--NNYCIAVK--- 752
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+GD ++VFL ++ G +SYG+QVA +AGVP+ V+E A
Sbjct: 753 ---EQGD-DIVFLRKIVKGGADKSYGIQVAKLAGVPELVIERA 791
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 165/382 (43%), Gaps = 62/382 (16%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISESG 332
QY K QY D +LF+++G FYE++ DA +EL+ +T G + G+
Sbjct: 4 QYLETKKQYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKDCGLEERAPMCGVPYHA 63
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVH 392
++ + KLV +GYKV EQ+E + AK ++ R+++ VVTP T +
Sbjct: 64 LEGYLSKLVQKGYKVAIGEQVEDPKTAKG-----LVKREVIRVVTPGTITNSQ------- 111
Query: 393 LLAIKEGNCGPDNGSV----VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
A++E G V ++G + D + V + + + L + + SP E+
Sbjct: 112 --ALEESKNNYLMGIVYTDGIFGISVADVSTGDYLVTEVKSERN---LIDEIYKFSPSEI 166
Query: 449 IYENRGLCKEAQKALRKFSAGSAALELTPAM--AVTD----FLDASEVKKLVQ------- 495
I C EA + +G +L + ++D F +KL++
Sbjct: 167 I------CNEAF-----YMSGIDLDDLKNRLHAVISDLDNRFFSDEFCRKLLRDHFHVEN 215
Query: 496 LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR---------LMLD-DVLRNGDI 545
L G + A V+Q+ + + HL+R +MLD RN ++
Sbjct: 216 LEGLGLSDYETGTIAAGAVLQY--LYETQKNSLDHLTRITPYTTGQFMMLDTSTRRNLEL 273
Query: 546 LPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSE 605
+ + R+ + LD T+ G R+LRS++ PL E I R + +E L N
Sbjct: 274 I--ETLREKQKRGTLLWVLDKTKTAMGARMLRSFVEQPLIHKEEILKRQNAIEELNMNYI 331
Query: 606 VVMVVAQYLRKLPDLERLLGRV 627
+ +YL + DLERLLGR+
Sbjct: 332 SREEICEYLNPIYDLERLLGRI 353
>gi|323486939|ref|ZP_08092254.1| hypothetical protein HMPREF9474_04005 [Clostridium symbiosum
WAL-14163]
gi|323399711|gb|EGA92094.1| hypothetical protein HMPREF9474_04005 [Clostridium symbiosum
WAL-14163]
Length = 886
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 164/283 (57%), Gaps = 30/283 (10%)
Query: 737 KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
+ + E HA++ DVL S +V A I P++ N ++ IK
Sbjct: 542 EVKRIQETAHAVALTDVLTSLSVVA-----------IRNNYVKPSI---NEKGIIHIKNG 587
Query: 797 WHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
HP +GG+ V ND L D+ R ++TGPNM GKST +R T L ++AQ+G
Sbjct: 588 RHPVVEQMMSGGMFVANDTYL----DNGKNRVSIITGPNMAGKSTYMRQTALITLMAQVG 643
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP + + L D IFTR+GA+D + +G+STF+VE TE A++L+ AT+ SL+ILDE+GR
Sbjct: 644 SFVPADEADIGLCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRSSLLILDEIGR 703
Query: 916 GTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GTSTFDG +IA+AV + + + + LFATHYH LT+ + V + A K
Sbjct: 704 GTSTFDGLSIAWAVVEYISNTKLLGAKTLFATHYHELTELEGTMSGV--NNYCIAVK--- 758
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+GD ++VFL ++ G +SYG+QVA +AGVP+ V+E A
Sbjct: 759 ---EQGD-DIVFLRKIVKGGADKSYGIQVAKLAGVPELVIERA 797
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 169/391 (43%), Gaps = 62/391 (15%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ ++S QY K QY D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 1 MAQLSPMMTQYLETKKQYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKDCGLEERA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ + KLV +GYKV EQ+E + AK ++ R+++ VVTP T +
Sbjct: 61 PMCGVPYHALEGYLSKLVQKGYKVAIGEQVEDPKTAKG-----LVKREVIRVVTPGTITN 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSV----VYGFAFVDCAALRVWVGTINDDASCAALGAL 439
A++E G V ++G + D + V + + + L
Sbjct: 116 SQ---------ALEESKNNYLMGIVYTDGIFGISVADVSTGDYLVTEVKSERN---LIDE 163
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAM--AVTD----FLDASEVKKL 493
+ + SP E+I C EA + +G +L + ++D F +KL
Sbjct: 164 IYKFSPSEII------CNEA-----FYMSGIDLDDLKNRLHAVISDLDNRFFSDEFCRKL 212
Query: 494 VQ-------LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR---------LMLD 537
++ L G + A V+Q+ + + HL+R +MLD
Sbjct: 213 LRDHFHVENLEGLGLSDYETGTIAAGAVLQY--LYETQKNSLEHLTRITPYTTGQFMMLD 270
Query: 538 -DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
RN +++ + R+ + LD T+ G R+LRS++ PL E I R +
Sbjct: 271 TSTRRNLELI--ETLREKQKRGTLLWVLDKTKTAMGARMLRSFVEQPLIHKEEILKRQNA 328
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+E L N + +YL + DLERLLGR+
Sbjct: 329 IEELNMNYISREEICEYLNPIYDLERLLGRI 359
>gi|42518561|ref|NP_964491.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii NCC 533]
gi|48428289|sp|P61668.1|MUTS_LACJO RecName: Full=DNA mismatch repair protein MutS
gi|41582846|gb|AAS08457.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii NCC 533]
Length = 857
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 182/340 (53%), Gaps = 38/340 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHA-------ISCIDVLRSFAVTAS 762
PD + H+ L+AE S +E LF++ + I A I+ +DVL +FA +
Sbjct: 496 PDLKEHEALILEAEAKSTGLEYDLFVKLREDVKKYIPALQKLAKQIASLDVLTNFATVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSD 821
++ RP + + V NG HP G +PND+ + +D++
Sbjct: 556 QNNYV--RPNFVTDKQEINVV--NG---------RHPVVEQVMTAGSYIPNDVKMDQDTN 602
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
L+TGPNM GKST +R L I+AQ+G FVP + L + D IFTR+GA D +
Sbjct: 603 -----IFLITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSATLPIFDQIFTRIGAADDL 657
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+ + L +++ +
Sbjct: 658 ISGQSTFMVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKA 717
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LFATHYH LT TL+H+ +E K L+FL+++ G +SYG+
Sbjct: 718 LFATHYHELTD-----LDQTLKHLKNIHVGATEENGK----LIFLHKILPGPADQSYGIH 768
Query: 1002 VAVMAGVPQKVV-EAASHAALAMKKSIGESFKSSEQRSEF 1040
VA +AG+P KV+ EA + K+ E +SEQ F
Sbjct: 769 VAQLAGLPHKVLREATTMLKRLEKQGASELQPASEQLDLF 808
Score = 107 bits (266), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 168/374 (44%), Gaps = 41/374 (10%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K + KQY+ +K QY D LF++VG FYEL+E DA G + L+ +T K +
Sbjct: 2 AKKDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELTLTHRS-NKTKN 60
Query: 326 ----VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +D V LV +GYKV EQLE ++AK ++ R ++ ++TP T
Sbjct: 61 PIPMAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAKG-----MVKRGIIQLITPGTM 115
Query: 382 VDGT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ D+ +L ++ N G +G A+ D + + + D A+
Sbjct: 116 MQERPDQAKDSNYLTSVISTNSG-------FGLAYSDLSTGETFSTHLAD---FEAVANE 165
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAG-SAALELTPAMAVTDFL-----DASEVKKL 493
L+ + +EV+Y N L + L+K + S +E+ A ++ D +E+K
Sbjct: 166 LLSLQTREVVY-NGHLTDLNKDFLKKANITVSEPVEVEGEHAEISYVAQNLTDDAEIKAT 224
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
QL Y S+ S A V Q L +SH + L+ + K +
Sbjct: 225 KQLVAYL-LSTQKRSLAHLQVAQSYEPTQYLQ--MSHTVQTNLELI---------KSAKT 272
Query: 554 CLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+M LD T+ G RLL+SWI PL V I R ++V+ L+ + V
Sbjct: 273 SKKMGSLFWLLDKTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKVIDS 332
Query: 614 LRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 333 LKGVYDLERLTGRI 346
>gi|376261287|ref|YP_005148007.1| DNA mismatch repair protein MutS [Clostridium sp. BNL1100]
gi|373945281|gb|AEY66202.1| DNA mismatch repair protein MutS [Clostridium sp. BNL1100]
Length = 873
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 164/285 (57%), Gaps = 28/285 (9%)
Query: 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKG 795
E+ S+ A++ IDVL S A A +P + K V D PV++
Sbjct: 541 EQLSRIKSTARALAEIDVLASLAEVADRE--GYCKPDVSVSDKIEIV--DGRHPVVE--- 593
Query: 796 LWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
+ + G VPND +L + D R ++TGPNM GKST +R T L V++AQ+G
Sbjct: 594 -----KMTDKSGF-VPNDTVLDMEED----RLAIITGPNMAGKSTYMRQTALIVLMAQIG 643
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP + L D IFTR+GA+D + +G+STF+VE +E A++L AT+ SL++LDE+GR
Sbjct: 644 SFVPAASAKIGLVDRIFTRVGASDDLASGQSTFMVEMSEVANILINATKRSLLVLDEIGR 703
Query: 916 GTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GTSTFDG +IA+AV +V E++ CR LFATHYH LT+ P + ++ K
Sbjct: 704 GTSTFDGLSIAWAVIEYIVSKEQLGCRTLFATHYHELTELEGKLPGI--KNYCITVK--- 758
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
KGD +++FL ++ G SYG+QVA +AGVP V++ A
Sbjct: 759 ---EKGD-DVIFLRKIIRGGADGSYGIQVAKLAGVPHAVIDRAKE 799
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 109/381 (28%), Positives = 176/381 (46%), Gaps = 58/381 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISES 331
+QY ++K QY D +LFF++G FYE++ DAE+ +EL+ +T G + G+
Sbjct: 9 QQYLDIKEQYKDCILFFRLGDFYEMFFSDAELASRELEITLTGRDCGLEERAPMCGVPFH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
D+ V +LV++GYKV EQ+E AK ++ R ++ VVTP T D T+ +
Sbjct: 69 AADNYVARLVSKGYKVAICEQVEDPALAKG-----IVKRDVIKVVTPGTVTDITMLDERK 123
Query: 392 --HLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
+L++I K GN YG VD + I + L + + P E+
Sbjct: 124 NNYLMSIYKNGN--------FYGLGAVDITTGDFYATRITWGNTRGKLFDEIAKYLPSEI 175
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
I E G + + +KF+ + E T ++ +A + K N + N
Sbjct: 176 IVNTELNGDNELTSEIKQKFNTYVSTFEETSF----EYGNAIDTLK----NQFEN----- 222
Query: 507 WSKALENVMQHDIGFSALGGLISH-------------------LSRLMLDDVLRNGDILP 547
KAL N+ ++DI +A G L+ + L M+ D ++
Sbjct: 223 --KAL-NIQEYDIAVNASGALLKYLESTQKVNLSHIQNFNSYALEEYMILDASSRRNLEL 279
Query: 548 YKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+ R+ + LD +TS G RLLR WI PL + I+ RL+ VE L KN +
Sbjct: 280 TETMREKSKKGSLLWVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLNAVEEL-KNKFMA 338
Query: 608 MVVA-QYLRKLPDLERLLGRV 627
V A + L+++ D+ERL+G+V
Sbjct: 339 RVEARELLKRVYDIERLMGKV 359
>gi|448628069|ref|ZP_21672206.1| DNA mismatch repair protein MutS, partial [Haloarcula vallismortis
ATCC 29715]
gi|445758444|gb|EMA09755.1| DNA mismatch repair protein MutS, partial [Haloarcula vallismortis
ATCC 29715]
Length = 618
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 160/295 (54%), Gaps = 26/295 (8%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
D++ E L E E+A+ +V A++ +D S AV A + RP ++
Sbjct: 226 DMEYERFQELRERVAERATLLQDVGRALAELDAFASLAVHAVEND--WTRPAVVE----- 278
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
G L I+ HP E VPND+ + +D + L++TGPNM GKST
Sbjct: 279 -------GNELSIEAGRHPVV--EQTTEFVPNDLYMDDDR-----QFLIVTGPNMSGKST 324
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R L +LAQ+G FVP + + D IFTR+GA D + G STF+VE E +++L
Sbjct: 325 YMRQAALITLLAQVGSFVPARSATVGMVDGIFTRVGALDELAQGRSTFMVEMQELSNILH 384
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT++SLVILDE+GRGT+TFDG +IA+A +V I + LFATHYH LT P V
Sbjct: 385 SATEESLVILDEVGRGTATFDGISIAWAATEYIVNSIQSKTLFATHYHELTALGEELPTV 444
Query: 961 TLQHMACAFKSNSENYSKG-DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVE 1014
H+A + E S G D ++ FL + G SYG+ VA +AGVP+ VV+
Sbjct: 445 ENVHVAV----DGEPRSAGSDGDVTFLRTVRDGPTDRSYGVHVADLAGVPEPVVD 495
>gi|339640062|ref|ZP_08661506.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453331|gb|EGP65946.1| DNA mismatch repair protein MutS [Streptococcus sp. oral taxon 056
str. F0418]
Length = 841
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 180/323 (55%), Gaps = 40/323 (12%)
Query: 732 ELFI---EKASQWSEVIHAIS----CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784
E+F+ E+A ++ + + A++ IDVL+SFAV A ++ L+ P
Sbjct: 513 EIFMRIREEAGKYIKRLQALAQTLATIDVLQSFAVVAE------NQHLVRPSF------- 559
Query: 785 DNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
LKI+ H G +PN +++ D+D L+TGPNM GKST +R
Sbjct: 560 -TANRTLKIEKGRHAVVEKVMGAQSYIPNSVVMDADTD-----IQLITGPNMSGKSTYMR 613
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ VI+AQ+G +VP E+ VL + D IFTR+GA D +++G+STF+VE E +++A+
Sbjct: 614 QLAIIVIMAQMGSYVPAELAVLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANRAIRQAS 673
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
+ SL++ DELGRGT+T+DG A+A A+ + +R + LFATHYH LT+ S P +
Sbjct: 674 EHSLILFDELGRGTATYDGMALAQAIIEYIHDRTKAKTLFATHYHELTELSTSLPRLENL 733
Query: 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA----SHA 1019
H+A K D ++ FL+++ G +SYG+ VA +AG+P ++E A +H
Sbjct: 734 HVATLEK---------DGQVTFLHKIEEGPADKSYGIHVAKIAGLPVDLLERADSILTHL 784
Query: 1020 ALAMKKSIGESFKSSEQRSEFSS 1042
K+ + + ++EQ S F +
Sbjct: 785 ESQDKQVVSQQKATAEQISLFEA 807
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 165/386 (42%), Gaps = 69/386 (17%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A +K+S +QY ++K Y D L F++G FYEL+ DA + L+ IT
Sbjct: 2 ATEKLSPGMQQYLDIKKDYQDAFLLFRMGDFYELFYEDAVNAAQILEIAITSRNKNSENP 61
Query: 326 V---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
+ G+ ++ LV GYKV EQ+E +QA V+ R++V V+TP T V
Sbjct: 62 IPMAGVPYHSAQQYIDTLVESGYKVAIAEQMEDPKQAVG-----VVKREVVQVITPGTVV 116
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTIND-DASCAALGALLM 441
D + + L + G YG A++D A V T+ D D +C + L
Sbjct: 117 DSSKSSGENNFLVSLDREEGQ------YGLAYMDLATGEFQVTTLADFDQACGEIRNL-- 168
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+EV+ L + +K L + L L+ V D L+ VQL G
Sbjct: 169 --QAREVVV-GYALPESEEKVL----SNQMNLLLS---RVEDVLED------VQLLG--- 209
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD--- 558
SP K + + H + F +SHL + + Y++ +D L+MD
Sbjct: 210 DELSPLEKRVAGKLLHYV-FQTQMRELSHLKK-----------VHHYEI-KDFLQMDYAT 256
Query: 559 ----------------GQTLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
G +L D T+ G RLLRSWI HPL D + I R DVV+ +
Sbjct: 257 KTSLDLIENARTGKKHGSLFWLMDEAKTAMGGRLLRSWIQHPLIDKDRITKRQDVVQVFL 316
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ ++ LR + D+ERL RV
Sbjct: 317 DSFFERSDLSDSLRGVYDIERLASRV 342
>gi|260881009|ref|ZP_05403375.2| DNA mismatch repair protein MutS [Mitsuokella multacida DSM 20544]
gi|260850167|gb|EEX70174.1| DNA mismatch repair protein MutS [Mitsuokella multacida DSM 20544]
Length = 876
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 163/288 (56%), Gaps = 35/288 (12%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
++ + H I+ +DVL S A AS + P +R D V+ IK H
Sbjct: 545 TEIQQTAHEIALVDVLASLAEAASSYNYV-----------RPQMRTDG---VIDIKDGRH 590
Query: 799 PFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
P L + L VPND L D DC +L+TGPNM GKST +R L ++AQ+G
Sbjct: 591 PLVERILTRD--LFVPNDAHL--DHQDC--EIMLITGPNMAGKSTYMRQVALLTLMAQIG 644
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
F+P +S D IFTR+GA+D +++G+STF+VE E A +L+ AT+DSLVILDE+GR
Sbjct: 645 SFIPAREASISPVDRIFTRIGASDDLVSGQSTFMVEMNEVAQILKYATKDSLVILDEIGR 704
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975
GTSTFDG +IA AV + ++++ + LFATHYH LT +++ A K
Sbjct: 705 GTSTFDGMSIARAVIEHIEKKVHAKTLFATHYHELT----DLEDDKIKNFCVAVK----- 755
Query: 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
+G+Q + FL R+ GA +SYG+ VA +AG+P+ V A LAM
Sbjct: 756 -ERGNQ-VAFLRRIVPGAADKSYGIHVARLAGLPKSVTSRAEE-ILAM 800
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 106/389 (27%), Positives = 168/389 (43%), Gaps = 63/389 (16%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-CRQ 325
L +M+ +QY K Q +LFF++G FYE++ DA++ KEL +T G+
Sbjct: 9 LMEMTPMMQQYLATKEQNPGAILFFRLGDFYEMFFEDAKLVSKELGLTLTSRSKGQDAPM 68
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + V KLV RGYKV EQ+ +AK + R+++ VVTP T + +
Sbjct: 69 CGVPYHAAETYVNKLVKRGYKVAIAEQI-GDPKAKG-----LTKREVIKVVTPGTILSES 122
Query: 386 I--GPDAVHLLAIKEGN-----CGPD--NGSVVYGFAFVDCAALRVWVGTINDDASCAAL 436
++ I E G D G YG ++ G L
Sbjct: 123 ALQATQNNYIALIYETGEKIVLAGADISTGECFYG----------IYEGGNRLQMLLDEL 172
Query: 437 GALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALEL-----TPAMAVTDFLDASEVK 491
L+M P+ +I AL++F AAL L TP V+ ++ V+
Sbjct: 173 YRLMM---PELLIVGKPSFA----SALKEF----AALRLPHCSFTPIAEVSHHVEDRIVE 221
Query: 492 KLVQLNGYFNGSSSP-WSKALENVMQ-HDIGFSALGGLISHLSRLMLDD----------V 539
+F+ ++ P S+A E V D + ++ L++LM D
Sbjct: 222 -------HFDAATRPAQSEAKEAVATLLDYLHETVRTDLTQLNQLMYLDASENLVVDTYT 274
Query: 540 LRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
LRN +I + RD + + LD T+ G RLL+ W+ +PL + GI RLD V
Sbjct: 275 LRNLEIT--RNLRDGGKKNTLLDVLDFTETAMGSRLLKKWLEYPLLSIAGITQRLDAVGE 332
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVK 628
L+ + + V + R++ D ERLL R++
Sbjct: 333 LVGDFSLRGGVREGCREIHDFERLLTRIE 361
>gi|184154989|ref|YP_001843329.1| DNA mismatch repair protein MutS [Lactobacillus fermentum IFO 3956]
gi|238692955|sp|B2GB17.1|MUTS_LACF3 RecName: Full=DNA mismatch repair protein MutS
gi|183226333|dbj|BAG26849.1| DNA mismatch repair protein MutS [Lactobacillus fermentum IFO 3956]
Length = 880
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 29/300 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
T L+ E + E E+ + ++ ++ +DV+++FA A
Sbjct: 511 TALEYELFVKVREAVKEQIDRLQKLAANLAALDVIQAFAKVAEDYHFV-----------R 559
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P++ D+ L+I+ HP G VPND+L+G D+ LL+TGPNM GK
Sbjct: 560 PSLNHDHQ---LQIEDGRHPVVEKFMGHQEYVPNDVLMGGDTS-----ILLITGPNMSGK 611
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L ++AQ+GCFVP + L + D IFTR+GA D +++GESTF+VE E +
Sbjct: 612 STYMRQLALTAVMAQMGCFVPAKRAQLPIFDQIFTRIGAADDLVSGESTFMVEMMEANNA 671
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
LQ AT DSL++ DE+GRGT+T+DG A+A A+ + R+ + LF+THYH LT
Sbjct: 672 LQNATADSLILFDEIGRGTATYDGMALAQAIIEFVHNRVGAKTLFSTHYHELTALEGELD 731
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
H+ H+ ++ + ELVFL+++T G +SYG+ VA +AG+P ++ A+
Sbjct: 732 HLQNVHVGA---------TEENGELVFLHKVTPGPADKSYGIHVAKLAGMPTPLLTRANQ 782
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 42/371 (11%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY VK QY D LF+++G FYE++ DA G + L+ +T K +
Sbjct: 4 KQTPMMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTSRSKSKDNSIPM 63
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-- 383
G+ +D+ V+ L+ +GYKV EQ+E + T ++ R++ +VTP TT+D
Sbjct: 64 CGVPHRAVDNYVDILIDKGYKVAICEQME-----DPKTTKGMVKREVTRLVTPGTTMDLA 118
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G +L A+K+ G Y A+ D + + V ++++A AA+ L+ +
Sbjct: 119 GDAARQNNYLTALKQEQGG-------YNLAYADLSTGELKVTKVSNEA--AAINELV-NL 168
Query: 444 SPKEVIYENRG----LCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
+EV+ E L + ++ + + + G + A D DA + + L Y
Sbjct: 169 QTREVVTEPEVSASLLDQLTKRNILRSTQGQVVNQAEVAYLSQDLTDAGQRDVVALLVSY 228
Query: 500 FNGSSSPWSKALENVMQHDIG-FSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLR 556
+ L+ + + + F I H S+ L L LR+G R
Sbjct: 229 LLTTQKRSLAHLQRAVAYQLSSFMK----IDHRSKVNLELTTNLRSGK-----------R 273
Query: 557 MDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
LD T+ G RLL+ W+ PL D I R D V+ L+ + + + L K
Sbjct: 274 QGTLAWLLDETKTAMGSRLLKQWLDRPLLDQAKIERRYDRVQELLDHYFERQNLQEELIK 333
Query: 617 LPDLERLLGRV 627
+ DLERL GRV
Sbjct: 334 VYDLERLAGRV 344
>gi|423720505|ref|ZP_17694687.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidans
TNO-09.020]
gi|383366560|gb|EID43850.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidans
TNO-09.020]
Length = 864
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 171/310 (55%), Gaps = 46/310 (14%)
Query: 722 LDAETLSILIE--LFI---EKASQW----SEVIHAISCIDVLRSFAVTAS-----MSSGA 767
L+AE SI +E LF+ E+ Q+ + AIS +DVL+SFA + +
Sbjct: 505 LEAEEKSIELEYELFVDIRERVKQYIPRLQSLAKAISELDVLQSFATVSEERHYVKPQFS 564
Query: 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRT 827
HR L++ ++P V + G VPND + ++ +
Sbjct: 565 EHRELVIQAGRHPVVEKVLGTQTY------------------VPNDCYMNKERE-----L 601
Query: 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGEST 887
LL+TGPNM GKST +R L I+AQ+GCFVP + VL + D +FTR+GA D +++G+ST
Sbjct: 602 LLITGPNMSGKSTYMRQIALTAIMAQIGCFVPADKAVLPIFDQVFTRIGAADDLVSGQST 661
Query: 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947
F+VE E + + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I + LF+THY
Sbjct: 662 FMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHY 721
Query: 948 HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAG 1007
H LT S P + H++ A + N ++VFL+++ G +SYG+ VA +AG
Sbjct: 722 HELTDLEQSLPKLKNVHVS-AVEENG--------KVVFLHKIEEGPADQSYGIHVAELAG 772
Query: 1008 VPQKVVEAAS 1017
+P ++ A
Sbjct: 773 LPSSLIRRAE 782
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 170/395 (43%), Gaps = 43/395 (10%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K + +QY ++K+QY D LFF++G FYE++ DA +EL+ +T G +V
Sbjct: 1 MAKYTPMIQQYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERV 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ +E+L+++GYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAQGYIEQLISKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTVME 115
Query: 384 GT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
G + + +L + G YGFA+ D L I AS + L
Sbjct: 116 GRGLLEKENNYLATVTLFADG------TYGFAYTD---LSTGENRITILASFEDVMNELY 166
Query: 442 QVSPKEVIY------ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ 495
+ KE++ + + L KE + G+ E +A D ++ +
Sbjct: 167 AIGTKEIVLASDFPSDEQQLLKERYGVTISYEDGTEMPEGFATIAGGLAQDKLQI-TFAR 225
Query: 496 LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCL 555
L Y + ++ V + + M D+ ++ + R
Sbjct: 226 LLHYIIRTQKRRLDHMQPVQ------------VYQVDHYMKIDLYSKRNLELTETIRSKG 273
Query: 556 RMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
R LD VT+ G RLL+ W+ PL D I RL +VE L+ + + + LR
Sbjct: 274 RKGSLLWLLDETVTAMGGRLLKQWLDRPLLDRGQIERRLHMVETLIHHYFERQELRERLR 333
Query: 616 KLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQ 649
++ D+ERL GRV V A I L KK L+Q
Sbjct: 334 EVYDVERLAGRVAYGNVNARDLIQL----KKSLQQ 364
>gi|350538025|ref|NP_001234067.1| mismatch repair protein [Solanum lycopersicum]
gi|296034481|gb|ADG85112.1| mismatch repair protein [Solanum lycopersicum]
Length = 943
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 167/300 (55%), Gaps = 27/300 (9%)
Query: 730 LIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L+ ++ + +SEV ++S +DVL SFA AS A RP I P D
Sbjct: 574 LVARVVQTVASFSEVFEGLAGSLSELDVLLSFADLASSCPTAYSRPNISPP--------D 625
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILL--GEDSDDCLPRTLLLTGPNMGGKSTLLR 843
G +L+ G HP ++ +PND L GE ++TGPNMGGKST +R
Sbjct: 626 TGDIILE--GCRHPCVEAQDWVNFIPNDCRLVRGE------SWFQIITGPNMGGKSTYIR 677
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
+ V++AQ+G FVPC+ +S+ D IF R+GA D + G STF+ E ETAS+L+ AT
Sbjct: 678 QVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLKGVSTFMQEMLETASILKGAT 737
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT---KEFASHPHV 960
SLVI+DELGRGTST+DG+ +A+A+ +VE I LFATH+H LT E ++ H
Sbjct: 738 NRSLVIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELTALANENGNNGHK 797
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ +A S + S ++L LY++ GAC +S+G+ VA A PQ VV A A
Sbjct: 798 QISSVANFHVSAHIDSSS--RKLTMLYKVQPGACDQSFGIHVAEFANFPQSVVALAREKA 855
Score = 62.0 bits (149), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 18/147 (12%)
Query: 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG 625
+C GKRLL W+ PL DV+ IN RLD+V+ ++++ + + Q+L+++ D+ERL
Sbjct: 326 TCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAFVEDAALRQDLRQHLKRISDIERLTH 385
Query: 626 RVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIF 685
++ R +AS L VK++ S G+RI +L +G P + +
Sbjct: 386 NLE-RKRAS------------LLHVVKLYQS---GIRIPYIKSVLERYDGQFAPLIRERY 429
Query: 686 KPPIFDGSDG--LDKFLTQFEAAIDSD 710
+ SD L+KF+ E A+D D
Sbjct: 430 IDSLEKWSDDNHLNKFIALVETAVDLD 456
>gi|336235959|ref|YP_004588575.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidasius
C56-YS93]
gi|335362814|gb|AEH48494.1| DNA mismatch repair protein mutS [Geobacillus thermoglucosidasius
C56-YS93]
Length = 864
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 171/310 (55%), Gaps = 46/310 (14%)
Query: 722 LDAETLSILIE--LFI---EKASQW----SEVIHAISCIDVLRSFAVTAS-----MSSGA 767
L+AE SI +E LF+ E+ Q+ + AIS +DVL+SFA + +
Sbjct: 505 LEAEEKSIELEYELFVDIRERVKQYIPRLQSLAKAISELDVLQSFATVSEERHYVKPQFS 564
Query: 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRT 827
HR L++ ++P V + G VPND + ++ +
Sbjct: 565 EHRELVIQAGRHPVVEKVLGTQTY------------------VPNDCYMNKERE-----L 601
Query: 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGEST 887
LL+TGPNM GKST +R L I+AQ+GCFVP + VL + D +FTR+GA D +++G+ST
Sbjct: 602 LLITGPNMSGKSTYMRQIALTAIMAQIGCFVPADKAVLPIFDQVFTRIGAADDLVSGQST 661
Query: 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947
F+VE E + + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I + LF+THY
Sbjct: 662 FMVEMLEARNAIVHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKTLFSTHY 721
Query: 948 HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAG 1007
H LT S P + H++ A + N ++VFL+++ G +SYG+ VA +AG
Sbjct: 722 HELTDLEQSLPKLKNVHVS-AVEENG--------KVVFLHKIEEGPADQSYGIHVAELAG 772
Query: 1008 VPQKVVEAAS 1017
+P ++ A
Sbjct: 773 LPSSLIRRAE 782
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 176/411 (42%), Gaps = 75/411 (18%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K + +QY ++K+QY D LFF++G FYE++ DA +EL+ +T G +V
Sbjct: 1 MAKYTPMIQQYLDIKAQYPDAFLFFRLGDFYEMFFDDAIKAAQELEITLTSRDGGGDERV 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ +E+L+++GYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAQGYIEQLISKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTVME 115
Query: 384 GT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
G + + +L + G YGFA+ D L I AS + L
Sbjct: 116 GRGLLEKENNYLATVTLFADG------TYGFAYTD---LSTGENRITILASFEDVMNELY 166
Query: 442 QVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ KE++ + E Q ++ + D +E+ +
Sbjct: 167 AIGTKEIVLASDFPSDEQQLLKERYG------------VTISYEDGTEMPE--------- 205
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYR--------- 552
G ++ +N +Q I F+ L I + LD + P +VY+
Sbjct: 206 GFATIAGGLAQNKLQ--ITFARLLHYIIRTQKRRLD------HMQPVQVYQVDHYMKIDL 257
Query: 553 ---------DCLRMDGQT----LYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+ +R G+ LD VT+ G RLL+ W+ PL D I RL +VE
Sbjct: 258 YSKRNLELTETIRSKGRKGSLLWLLDETVTAMGGRLLKQWLDRPLLDRGQIERRLHMVET 317
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVK-ARVQASSCIVLPLIGKKVLKQ 649
L+ + + + LR++ D+ERL GRV V A I L KK L+Q
Sbjct: 318 LIHHYFERQELRERLREVYDVERLAGRVAYGNVNARDLIQL----KKSLQQ 364
>gi|385825393|ref|YP_005861735.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii DPC 6026]
gi|417837009|ref|ZP_12483249.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii pf01]
gi|329666837|gb|AEB92785.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii DPC 6026]
gi|338762688|gb|EGP13955.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii pf01]
Length = 857
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 182/340 (53%), Gaps = 38/340 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHA-------ISCIDVLRSFAVTAS 762
PD + H+ L+AE S +E LF++ + I A I+ +DVL +FA +
Sbjct: 496 PDLKEHEALILEAEAKSTGLEYDLFVKLREDVKKYIPALQKLAKQIASLDVLTNFATVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSD 821
++ RP + + V NG HP G +PND+ + +D++
Sbjct: 556 QNNYV--RPNFVTDKQEINVV--NG---------RHPVVEQVMTAGSYIPNDVKMDQDTN 602
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
L+TGPNM GKST +R L I+AQ+G FVP + L + D IFTR+GA D +
Sbjct: 603 -----IFLITGPNMSGKSTYMRQMALIAIMAQIGSFVPADSATLPIFDQIFTRIGAADDL 657
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+ + L +++ +
Sbjct: 658 ISGQSTFMVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLHDKVGAKT 717
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LFATHYH LT TL+H+ +E K L+FL+++ G +SYG+
Sbjct: 718 LFATHYHELTD-----LDQTLKHLKNIHVGATEENGK----LIFLHKILPGPADQSYGIH 768
Query: 1002 VAVMAGVPQKVV-EAASHAALAMKKSIGESFKSSEQRSEF 1040
VA +AG+P KV+ EA + K+ E +SEQ F
Sbjct: 769 VAQLAGLPHKVLREATTMLKRLEKQGASELQPASEQLDLF 808
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 167/374 (44%), Gaps = 41/374 (10%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K + KQY+ +K QY D LF++VG FYEL+E DA G + L+ +T K +
Sbjct: 2 AKKDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAIKGAQILELTLTHRS-NKTKN 60
Query: 326 ----VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +D V LV +GYKV EQLE ++AK ++ R ++ ++TP T
Sbjct: 61 PIPMAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAKG-----MVKRGIIQLITPGTM 115
Query: 382 VDGT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ D+ +L ++ N G +G A+ D + + + D A
Sbjct: 116 MQERPDQAKDSNYLTSVISTNSG-------FGLAYSDLSTGETFSTHLTDFEGVA---NE 165
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAG-SAALELTPAMAVTDFL-----DASEVKKL 493
L+ + +EV+Y N L + L+K + S +E+ A ++ + +E+K
Sbjct: 166 LLSLQTREVVY-NGHLTDLNKDFLKKANITVSEPVEVEGEHAEISYVAQNLTNDAEIKAT 224
Query: 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRD 553
QL Y S+ S A V Q L +SH + L+ + K +
Sbjct: 225 KQLVAYL-LSTQKRSLAHLQVAQSYEPTQYLQ--MSHTVQTNLELI---------KSAKT 272
Query: 554 CLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+M LD T+ G RLL+SWI PL V I R ++V+ L+ + V
Sbjct: 273 SKKMGSLFWLLDKTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKVIDS 332
Query: 614 LRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 333 LKGVYDLERLTGRI 346
>gi|119476596|ref|ZP_01616906.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143]
gi|119449852|gb|EAW31088.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143]
Length = 855
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 169/300 (56%), Gaps = 28/300 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E+ ++ A+S +DVL + A A + + RP + P ++ + G
Sbjct: 529 LLETLNEQLAELQATASALSELDVLGNLAERAENLN--LERPEF---NTTPLIQIEQGRH 583
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++ + L PF +PND+ D R L++TGPNMGGKST +R T + V
Sbjct: 584 LVVEQVLDEPF---------IPNDVAF-----DDQRRMLIVTGPNMGGKSTYMRQTAVIV 629
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA +G +VP + ++L D IFTR+G++D + G STF+VE TETA++L AT SLV+
Sbjct: 630 LLAHIGSYVPAKSATINLVDQIFTRIGSSDDLAGGRSTFMVEMTETANILHNATDKSLVL 689
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++A+A L R+ LFATHY LT + V H+
Sbjct: 690 MDEIGRGTSTFDGLSLAWASAVYLATRVKAFTLFATHYFELTTLPEDYSQVHNVHL---- 745
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029
+ ++ + +VFL+ + G +SYGLQVA +AG+P VV+AA H +++ G+
Sbjct: 746 -----DATEHNDHIVFLHSIKEGPASKSYGLQVAKLAGMPDAVVQAAKHKLASLEAPEGQ 800
Score = 74.7 bits (182), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 166/382 (43%), Gaps = 63/382 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGI- 333
+QY+ +K+++ + L+F+++G FYEL+ DA++ + + ITL+ GK I +GI
Sbjct: 12 QQYFKIKAEHPNELVFYRMGDFYELFFDDAKLASELM--GITLTARGKSGGEPIPMAGIP 69
Query: 334 ----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD 389
D + KLV G V EQ T + A ++ + R++V VVTP T D + +
Sbjct: 70 FHSADGYLAKLVRHGQSVAICEQ--TGDPATSK---GPVERQVVRVVTPGTISDEALLEE 124
Query: 390 AVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
L+A+ + N +G A +D + R V + D +A+ + L ++ P E
Sbjct: 125 HRDNLLVAVNQVNSR-------FGMATLDIGSGRFQVFEVED---VSAVLSELQRLDPAE 174
Query: 448 VIYENRGLCKE---AQKALRK-----FSAGSAALELTPAMAVTDF---------LDASEV 490
++ + + E A+ +R+ F +A LT D L +
Sbjct: 175 ILIHD-DINNEHILARTGVRRRPPWEFEQDTAERLLTQQFNTKDLTGFGCVGLNLAIAAA 233
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
L+Q ++ P ++L + + D ++LD R ++
Sbjct: 234 GCLLQYAQETQRTALPHIRSLTHERRED--------------SVVLDAATRRN----LEI 275
Query: 551 YRDCLRMDGQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+ D TL +D T+ G RLLR W+ PL D + R D + L+ N +
Sbjct: 276 DTNLTGGDKHTLQWVMDKTKTAMGSRLLRRWLNRPLNDAAILVERQDAIRSLLHNYQ-FE 334
Query: 609 VVAQYLRKLPDLERLLGRVKAR 630
+ L+ + D+ER+L R+ R
Sbjct: 335 PFREGLKPVGDMERILARIALR 356
>gi|32474719|ref|NP_867713.1| DNA mismatch repair protein MutS [Rhodopirellula baltica SH 1]
gi|44888173|sp|Q7UP05.1|MUTS_RHOBA RecName: Full=DNA mismatch repair protein MutS
gi|32445258|emb|CAD75260.1| DNA mismatch repair protein MUTS [Rhodopirellula baltica SH 1]
Length = 891
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 158/279 (56%), Gaps = 36/279 (12%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP--- 799
EV +AI+ DV+ S A A+ RP + S VL+I+G HP
Sbjct: 560 EVANAIAMTDVVASLAEVAAQHHWV--RPTLTDDS------------VLRIEGGRHPVLD 605
Query: 800 --FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
A GE VPND + ++ LL+TGPNM GKST +R L +LAQ G F
Sbjct: 606 VTMAQGEF----VPNDCIQSPETG----MILLITGPNMAGKSTYIRQVALITLLAQTGSF 657
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + +AD IF R+GA+D + G+STF+VE ETA +L AT SLVILDE+GRGT
Sbjct: 658 VPATSAEIGIADRIFARVGASDELSRGQSTFMVEMVETARILNTATSRSLVILDEIGRGT 717
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
ST+DG ++A+A+ L E+I R LFATHYH L + P V +++ A K
Sbjct: 718 STYDGLSLAWAITEHLHEQIGARTLFATHYHELAALQETLPRVA--NLSVAVK------- 768
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ E+VFL+R+ G+ +SYG+QVA +AG+P +V E A
Sbjct: 769 EWQDEVVFLHRIVPGSADKSYGIQVARLAGIPVEVNERA 807
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/400 (24%), Positives = 149/400 (37%), Gaps = 71/400 (17%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK-----CR 324
M+ +QY K D LLFF++G FYEL+ DA++ L +TL+ K
Sbjct: 1 MTPMMRQYHEAKEACGDALLFFRMGDFYELFLDDAKVAAGIL--GLTLTSRDKDSENPTA 58
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G +D ++KL+ G++ EQ+E + AK ++ R++ VV+ T D
Sbjct: 59 MAGFPHHQLDQYLQKLIRAGFRAAVCEQVEDPKAAKG-----LVRREITRVVSAGTLTDE 113
Query: 384 GTIGPDAVHLLAI-------------KEG--NCGPDNGSVVYGFAFVDCAALRVWVGTIN 428
G + P + LA KE P G VV G A+ + ++ R G
Sbjct: 114 GLLDPKEPNYLAAVFAPSQKAREKAQKEAAKTNDPSGGDVV-GIAWAELSSGRFEAGVF- 171
Query: 429 DDASCAALGALLMQVSPKEVIY-ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA 487
A L L ++ P EV++ E+ A ++A A A A
Sbjct: 172 ---PRARLDDELARIGPAEVLHCEDDASVHPDPTATWSWTA-RPAWSYAAADAEKSLCKQ 227
Query: 488 SEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR-------------- 533
V L L NG D+ A G ++ +L
Sbjct: 228 LSVANLEGLGFEDNG---------------DVAIRAAGAVLCYLKETQRGSLDHFRSLTC 272
Query: 534 ------LMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDV 587
L +D R + + R R +D VT G R+L + PL D
Sbjct: 273 HNRSPVLQIDAATRRS-LEITRTMRTGSREGALLGVIDRTVTPMGSRMLADHLAAPLIDA 331
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ I R D V+ ++N+ + + L DL RLL RV
Sbjct: 332 DAITYRTDAVDEFVRNNNLRSDIRTVLGDTYDLTRLLARV 371
>gi|402837040|ref|ZP_10885571.1| DNA mismatch repair protein MutS [Mogibacterium sp. CM50]
gi|402270056|gb|EJU19325.1| DNA mismatch repair protein MutS [Mogibacterium sp. CM50]
Length = 867
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 176/315 (55%), Gaps = 38/315 (12%)
Query: 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPV 790
IE +I + + S +++ +DVL + A AS PAV N V
Sbjct: 540 IEPYIARLQKASA---SVALLDVLTALAAVASRYGYV-----------KPAVDDSN---V 582
Query: 791 LKIKGLWHPFA---LGENGGLPVPNDILLGEDSDDCLPRTLLL-TGPNMGGKSTLLRATC 846
+ I+ HP +GE GL V N LL D + R++L+ TGPNM GKST +R T
Sbjct: 583 IDIREGRHPAVEQMIGE--GLFVSNSTLL-----DTVSRSMLIITGPNMSGKSTYMRQTA 635
Query: 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906
+ V++AQLG FVPCE + + D +FTR+GA+D + G+STF +E +E A++L+ AT S
Sbjct: 636 IIVLMAQLGSFVPCESAHIGVVDRVFTRIGASDNLSYGQSTFYIEMSELANILRNATDRS 695
Query: 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINC-RLLFATHYHPLTKEFASHPHVTLQHM 965
L+ILDE+GRGTSTFDG +IA+A L + NC R +FATHYH LT L+
Sbjct: 696 LIILDEIGRGTSTFDGLSIAWATIEYLSKPGNCIRTMFATHYHELT---------VLESR 746
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
K+ S S+ ++VFL++++ +SYG+ VA +AGVP ++ AS ++
Sbjct: 747 FANVKNLSVAVSEQGSDVVFLHKISEQPASKSYGIHVAKIAGVPAEIRRKASTKLRELES 806
Query: 1026 SIGESFKSSEQRSEF 1040
G S +S+Q S F
Sbjct: 807 DSGTSPLTSDQISFF 821
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/391 (27%), Positives = 174/391 (44%), Gaps = 66/391 (16%)
Query: 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQV 326
+S KQY+ +K QY D LL +++G FYEL+ DA +EL+ +T G +
Sbjct: 3 LSPMMKQYFAIKEQYKDCLLMYRLGDFYELFFDDALTTSRELELTLTGRNCGLEERAPMC 62
Query: 327 GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT-VD-G 384
G+ + + KLV++GYKV EQ+E ++AK +++R+++ ++TP T +D
Sbjct: 63 GVPFHAANSYIAKLVSKGYKVAICEQIEDPKEAKG-----IVNREVIRIITPGTIDIDEA 117
Query: 385 TIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVS 444
T D ++L +I NGS A+VD I DD C L A L ++
Sbjct: 118 TSAKDNLYLASIYV------NGSSS-AIAYVDITTGEFNALEIKDDGDCEQLIAELSRIV 170
Query: 445 PKEVIYENRGLCKEAQKALRKFSA-----------------GSAALELTPAMAVTDF--L 485
P+E+I K+A + ++S S A L VT L
Sbjct: 171 PREII----CYSKDASAFIDRYSKMSPETYINEIDDSYFKYSSCADILKTQFGVTSLIPL 226
Query: 486 DASEVKKLVQLNG----YFNGS---SSPWSKALENVMQHDIGFSALGGLISHLSRLMLD- 537
D + +++ G Y + +SP K L N+ + D G ++LD
Sbjct: 227 DIQDRREITISAGALLLYLTETEKQASPQIKHL-NIKESDSG-------------MVLDR 272
Query: 538 DVLRNGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
+RN ++L + Y + G L +D T+ G RL+R +I PL + IN RLD
Sbjct: 273 STMRNLELLETQ-YNHSQK--GSLLGVIDKTHTAMGGRLIRRFIKEPLNNSNAINKRLDA 329
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
VE L+ + L+ + D ERL R+
Sbjct: 330 VEVLVDLPLNRANIVASLKHVYDFERLTARI 360
>gi|260663384|ref|ZP_05864275.1| DNA mismatch repair protein MutS [Lactobacillus fermentum 28-3-CHN]
gi|260552236|gb|EEX25288.1| DNA mismatch repair protein MutS [Lactobacillus fermentum 28-3-CHN]
Length = 880
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 29/300 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
T L+ E + E E+ + ++ ++ +DV+++FA A
Sbjct: 511 TALEYELFVKVREAVKEQIDRLQKLAANLAALDVIQAFAKVAEDYHFV-----------R 559
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P++ D+ L+I+ HP G VPND+L+G D+ LL+TGPNM GK
Sbjct: 560 PSLNHDHQ---LQIEDGRHPVVEKFMGHQEYVPNDVLMGGDTS-----ILLITGPNMSGK 611
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L ++AQ+GCFVP + L + D IFTR+GA D +++GESTF+VE E +
Sbjct: 612 STYMRQLALTAVMAQMGCFVPAKRAQLPIFDQIFTRIGAADDLVSGESTFMVEMMEANNA 671
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
LQ AT DSL++ DE+GRGT+T+DG A+A A+ + R+ + LF+THYH LT
Sbjct: 672 LQNATADSLILFDEIGRGTATYDGMALAQAIIEFVHNRVGAKTLFSTHYHELTALEGELD 731
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
H+ H+ ++ + ELVFL+++T G +SYG+ VA +AG+P ++ A+
Sbjct: 732 HLQNVHVGA---------TEENGELVFLHKVTPGPADKSYGIHVAKLAGMPTPLLTRANQ 782
Score = 105 bits (262), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 42/371 (11%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV-- 326
K + +QY VK QY D LF+++G FYE++ DA G + L+ +T K +
Sbjct: 4 KQTPMMEQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTSRSKSKDNPIPM 63
Query: 327 -GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD-- 383
G+ +D+ V+ L+ +GYKV EQ+E + T ++ R++ +VTP TT+D
Sbjct: 64 CGVPHRAVDNYVDILIDKGYKVAICEQME-----DPKTTKGMVKREVTRLVTPGTTMDLA 118
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G +L A+K+ G Y A+ D + + V ++++A AA+ L+ +
Sbjct: 119 GDAARQNNYLTALKQEQGG-------YNLAYADLSTGELKVTKVSNEA--AAINELV-NL 168
Query: 444 SPKEVIYENRG----LCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY 499
+EV+ E L + ++ + + + G + A D DA + + L Y
Sbjct: 169 QTREVVTEPEVSASLLDQLTKRNILRSTQGQVVNQAEVAYLSQDLTDAGQRDVVALLVSY 228
Query: 500 FNGSSSPWSKALENVMQHDIG-FSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLR 556
+ L+ + + + F I H S+ L L LR+G R
Sbjct: 229 LLTTQKRSLAHLQRAVAYQLSSFMK----IDHRSKVNLELTTNLRSGK-----------R 273
Query: 557 MDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRK 616
LD T+ G RLL+ W+ PL D I R D V+ L+ + + + L K
Sbjct: 274 QGTLAWLLDETKTAMGSRLLKQWLDRPLLDQAKIERRYDRVQELLDHYFERQNLQEELIK 333
Query: 617 LPDLERLLGRV 627
+ DLERL GRV
Sbjct: 334 VYDLERLAGRV 344
>gi|149727014|ref|XP_001503905.1| PREDICTED: DNA mismatch repair protein Msh3 [Equus caballus]
Length = 1128
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 164/305 (53%), Gaps = 23/305 (7%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 792 VLDCSAEWLEFL-ENFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTL--QEE 846
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
+ ++ PV+ + LGE VPN L DS+ R +++TGPNMGGK
Sbjct: 847 RKILIKNGRHPVIDV-------LLGEQDQY-VPNSTNLSGDSE----RVMIITGPNMGGK 894
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L ++AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 895 SSYIKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 954
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-EFASH 957
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + E +
Sbjct: 955 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELERSYS 1014
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
V HM + +G++E V FLY++T G SYGL VA +A VP ++
Sbjct: 1015 QQVGNYHMGFLVNEDDSKPDQGEEEQVPDFVTFLYQITKGIAARSYGLNVAKLADVPGEI 1074
Query: 1013 VEAAS 1017
++ A+
Sbjct: 1075 LKKAA 1079
Score = 100 bits (248), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 177/419 (42%), Gaps = 69/419 (16%)
Query: 256 DKRT--LYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDW 313
+KRT +Y P E QY +K Q D +L + G Y + DAEI +EL+
Sbjct: 214 NKRTKSIYTPLEL---------QYIEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNI 264
Query: 314 KITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKL 372
L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SRKL
Sbjct: 265 YCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSLFSRKL 322
Query: 373 VNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVYGF 412
+ T ST + + P DAV +LL I KE G++ G
Sbjct: 323 TALYTKSTLIGEDVNPLVKLDDAVNVDEIITDTSTSYLLCICENKENVKDKKKGNIFIGL 382
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
V A V + D AS + L ++ + P E++ + L ++ + +R+ +A S
Sbjct: 383 VGVQPATGEVVFDSFQDSASRSELETRILSLQPVELLLPS-TLSEQTELLIRRATAVSVR 441
Query: 473 -------------LELTPAMA-VTDFL--DASEVKKLVQLNGYFNGSSSPWSKA------ 510
E + A VT+F D +VK +G N +
Sbjct: 442 DDRIRVERMDNMYFEYSHAFQMVTEFYAKDVVDVKGSQSFSGIINLEKAVICSLAAIIRY 501
Query: 511 -----LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY-L 564
LE V+ F G + ++ + LRN +IL + ++ G L+ L
Sbjct: 502 LKDFNLEKVLSKPKNFKQFSGEMEFMT--INGTTLRNLEILQNQTD---MKTKGSLLWVL 556
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLER 622
D T+ G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+ER
Sbjct: 557 DHTKTAFGRRKLKKWVTQPLLKIRDINARLDAVSEVLYSESSVFGQIENHLRKLPDIER 615
>gi|207341422|gb|EDZ69483.1| YOL090Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 872
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 153/268 (57%), Gaps = 13/268 (4%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVE 1014
Y++ G +S+G+ VA + P+K+V+
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVK 870
Score = 63.5 bits (153), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>gi|119491961|ref|XP_001263475.1| DNA mismatch repair protein Msh2, putative [Neosartorya fischeri NRRL
181]
gi|119411635|gb|EAW21578.1| DNA mismatch repair protein Msh2, putative [Neosartorya fischeri NRRL
181]
Length = 940
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 161/297 (54%), Gaps = 24/297 (8%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA A + A RP + P+ V +K HP ++
Sbjct: 593 LAHLDVIVSFAHAAVHAPTAYVRPKMHPRGTGNTV----------LKEARHPCMEMQDDI 642
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L D L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 643 SFITNDVSLIRDESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 698
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D I R+GA+D + G STF+ E ET+++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 699 FDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTYDGFGLAW 758
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD-----QE 982
A+ +V I C LFATH+H LT +P AF + N + G+ Q+
Sbjct: 759 AISEHIVTEIRCFGLFATHFHELTALADRYPKSVKNLHVVAFIGDGTNDNAGEEKSKKQQ 818
Query: 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSE 1039
+ LYR+ G C +S+G+ VA + P+KVV A A + E F S+E + +
Sbjct: 819 VTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAEEL-----EDFTSAEAQGQ 870
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDV--LRNGDILPYKVYRDCLRMDG 559
GS+S K L VM F LS+ M D LR +++P RD R
Sbjct: 262 GSASALIKYL-GVMSDPSNFGQYQLYQHDLSQFMKLDASALRALNLMPGP--RDGSRTMS 318
Query: 560 QTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV-AQYLRKLP 618
L+ C T G RLL W+ PL D+ I R +VE ++N+E+ + ++LR +P
Sbjct: 319 LFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQQLVEAFVENTELRQTLQEEHLRSIP 378
Query: 619 DLERLLGRVKARVQAS 634
DL RL R + R QA+
Sbjct: 379 DLYRLAKRFQ-RKQAN 393
>gi|322708049|gb|EFY99626.1| DNA mismatch repair protein MSH2 [Metarhizium anisopliae ARSEF 23]
Length = 1058
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 163/295 (55%), Gaps = 12/295 (4%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ + AS + V+ ++ VL V S++ ++H P P +
Sbjct: 700 TQSSLVNEVVNVASSYCPVLERLA--GVLAHLDVIVSLAHCSVHAP---EAYVRPKIHTR 754
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G ++ G HP ++ + ND+ D L ++TGPNMGGKST +R
Sbjct: 755 GEGQT-RLIGARHPCMELQDDVQFITNDLEFTRDKSSFL----IITGPNMGGKSTYIRQA 809
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+GCFVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT++
Sbjct: 810 GVIALMAQIGCFVPCAEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATKE 869
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT +P V H+
Sbjct: 870 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTALADQYPQVRNLHV 929
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
++ SK +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 930 TAHISGTGKDNSK--REVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKA 982
Score = 46.6 bits (109), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLER 622
L+ C T G RLL W+ PL D + I R +VE ++E+ + ++LR +PDL R
Sbjct: 455 LNHCKTPVGSRLLAQWLKQPLMDKDEIEKRQQLVEAFFNDTELRQTMQEEHLRSVPDLYR 514
Query: 623 LLGRVK 628
L R +
Sbjct: 515 LSKRFQ 520
>gi|227514527|ref|ZP_03944576.1| DNA mismatch repair protein MutS [Lactobacillus fermentum ATCC 14931]
gi|385812095|ref|YP_005848486.1| DNA mismatch repair protein mutS [Lactobacillus fermentum CECT 5716]
gi|227087084|gb|EEI22396.1| DNA mismatch repair protein MutS [Lactobacillus fermentum ATCC 14931]
gi|299782994|gb|ADJ40992.1| DNA mismatch repair protein mutS [Lactobacillus fermentum CECT 5716]
Length = 873
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 29/300 (9%)
Query: 720 TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779
T L+ E + E E+ + ++ ++ +DV+++FA A
Sbjct: 504 TALEYELFVKVREAVKEQIDRLQKLAANLAALDVIQAFAKVAEDYHFV-----------R 552
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
P++ D+ L+I+ HP G VPND+L+G D+ LL+TGPNM GK
Sbjct: 553 PSLNHDHQ---LQIEDGRHPVVEKFMGHQEYVPNDVLMGGDTS-----ILLITGPNMSGK 604
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST +R L ++AQ+GCFVP + L + D IFTR+GA D +++GESTF+VE E +
Sbjct: 605 STYMRQLALTAVMAQMGCFVPAKRAQLPIFDQIFTRIGAADDLVSGESTFMVEMMEANNA 664
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
LQ AT DSL++ DE+GRGT+T+DG A+A A+ + R+ + LF+THYH LT
Sbjct: 665 LQNATADSLILFDEIGRGTATYDGMALAQAIIEFVHNRVGAKTLFSTHYHELTALEGELD 724
Query: 959 HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
H+ H+ ++ + ELVFL+++T G +SYG+ VA +AG+P ++ A+
Sbjct: 725 HLQNVHVGA---------TEENGELVFLHKVTPGPADKSYGIHVAKLAGMPTPLLTRANQ 775
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 42/365 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY VK QY D LF+++G FYE++ DA G + L+ +T K + G+
Sbjct: 3 EQYQRVKDQYPDAFLFYRLGDFYEMFNEDAVKGAQLLELTLTSRSKSKDNPIPMCGVPHR 62
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+D+ V+ L+ +GYKV EQ+E + T ++ R++ +VTP TT+D G
Sbjct: 63 AVDNYVDILIDKGYKVAICEQME-----DPKTTKGMVKREVTRLVTPGTTMDLAGDAARQ 117
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+L A+K+ G Y A+ D + + V ++++A AA+ L+ + +EV+
Sbjct: 118 NNYLTALKQEQGG-------YNLAYADLSTGELKVTKVSNEA--AAINELV-NLQTREVV 167
Query: 450 YENRG----LCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSS 505
E L + ++ + + + G + A D DA + + L Y +
Sbjct: 168 TEPEVSASLLDQLTKRNILRSTQGQVVNQAEVAYLSQDLTDAGQRDVVALLVSYLLTTQK 227
Query: 506 PWSKALENVMQHDIG-FSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQTL 562
L+ + + + F I H S+ L L LR+G R
Sbjct: 228 RSLAHLQRAVAYQLSSFMK----IDHRSKVNLELTTNLRSGK-----------RQGTLAW 272
Query: 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLER 622
LD T+ G RLL+ W+ PL D I R D V+ L+ + + + L K+ DLER
Sbjct: 273 LLDETKTAMGSRLLKQWLDRPLLDQAKIERRYDRVQELLDHYFERQNLQEELIKVYDLER 332
Query: 623 LLGRV 627
L GRV
Sbjct: 333 LAGRV 337
>gi|197122562|ref|YP_002134513.1| DNA mismatch repair protein MutS [Anaeromyxobacter sp. K]
gi|238689851|sp|B4UCY7.1|MUTS_ANASK RecName: Full=DNA mismatch repair protein MutS
gi|196172411|gb|ACG73384.1| DNA mismatch repair protein MutS [Anaeromyxobacter sp. K]
Length = 882
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 135/210 (64%), Gaps = 12/210 (5%)
Query: 810 VPNDILLG-EDSDDCLPR--TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPND+L+ D+ +C L++TGPNM GKST++R L V+LAQ+G FVP +
Sbjct: 602 VPNDVLVASRDAPECAEHGALLVITGPNMAGKSTVMREAALVVLLAQMGAFVPARRARIG 661
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
L D IFTR+GA+D + G STF+VE TETA++L AT+ SLV+LDE+GRGTSTFDG +IA
Sbjct: 662 LVDRIFTRVGASDDLARGRSTFMVEMTETAAILHNATRRSLVVLDEIGRGTSTFDGVSIA 721
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+AV L + CR LFATHYH L P V +++ A + GD+ +VFL
Sbjct: 722 WAVAEHLHDVTGCRTLFATHYHELQDLARERPAV--RNLTVAVREV------GDR-VVFL 772
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+L G SYG++VA +AG+P +V+ A
Sbjct: 773 RKLVQGGASRSYGIEVAKLAGLPAEVLARA 802
Score = 89.0 bits (219), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 163/379 (43%), Gaps = 38/379 (10%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG-- 321
PE + + +QY K++Y D +LFF++G FYE++ DA + L +T G
Sbjct: 2 PEIAQAHTPMMRQYLETKARYPDAILFFRLGDFYEMFFEDALTASEALQITLTARSKGDD 61
Query: 322 KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
K G+ V +L+ +G+KV +Q+E +++ ++ R++ VVTP
Sbjct: 62 KVPMCGVPYHAARGYVARLLEKGFKVAICDQVEEPGKSQ------LVKREVTRVVTPGMV 115
Query: 382 VDGTI-GPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALL 440
+D + P L G D+G G A +D + ++ G ++ D L L
Sbjct: 116 LDDQVLDPREASWL----GAVALDDGRA--GLALLDASTGQLQCGEVDGDER---LVDEL 166
Query: 441 MQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGY- 499
+ +E+++ + A+ R A +A + D L + + L+G+
Sbjct: 167 RRAGVRELVFSSAADGARAEAIARAVGAPAARRDAAEFERAEDRL--RKHLGVPSLDGFG 224
Query: 500 FNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDG 559
+G + A + A + +SRL DDVL L + R L ++
Sbjct: 225 VSGLPLGLAAAAAALAYLADTQRAAPRHVDRISRLSTDDVL-----LLDEATRTNLELE- 278
Query: 560 QTL-----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
+TL LD VT+ G R L W+ +PL D+ I RLD VE L +
Sbjct: 279 RTLSGGRKKGTLLALLDRTVTAPGGRRLAEWLRYPLTDLARIGARLDAVEELTGAAVARE 338
Query: 609 VVAQYLRKLPDLERLLGRV 627
+A LR + DLERLL R+
Sbjct: 339 ELALALRPVADLERLLSRL 357
>gi|282881060|ref|ZP_06289748.1| DNA mismatch repair protein MutS [Prevotella timonensis CRIS 5C-B1]
gi|281305067|gb|EFA97139.1| DNA mismatch repair protein MutS [Prevotella timonensis CRIS 5C-B1]
Length = 887
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 147/251 (58%), Gaps = 28/251 (11%)
Query: 777 SKNPAVR-QDNGGPVLKIKGLWHP-----FALGENGGLPVPNDILLGEDSDDCLPRTLLL 830
+N VR Q + VL IK HP LGE VPNDI L + + +++
Sbjct: 578 EENQYVRPQIDATDVLDIKQGRHPVIEMQLPLGET---YVPNDIYLDAEKQ----QIMMI 630
Query: 831 TGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890
TGPNM GKS LLR T L V+LAQ+GCFVP E + L D IFTR+GA+D I GESTF+V
Sbjct: 631 TGPNMAGKSALLRQTALIVLLAQIGCFVPAESAKIGLVDKIFTRVGASDNISLGESTFMV 690
Query: 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLFATHYH 948
E TE A++L T SLV+ DELGRGTST+DG +IA+A+ L E R R LFATHYH
Sbjct: 691 EMTEAANILNNVTNRSLVLFDELGRGTSTYDGISIAWAIVEYLHEQPRARARTLFATHYH 750
Query: 949 PLTKEFASHPHVTLQHMACAFKSNSENYS--KGDQELVFLYRLTSGACPESYGLQVAVMA 1006
L + P + N+ N S + D +++F+ +L G S+G+ VA +A
Sbjct: 751 ELNEMEKHFPRI-----------NNYNVSVKEADGKVIFMRKLERGGSEHSFGIHVAEIA 799
Query: 1007 GVPQKVVEAAS 1017
G+P+ +V+ ++
Sbjct: 800 GMPRSIVKRSN 810
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 168/384 (43%), Gaps = 43/384 (11%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL----SGVGKC 323
K ++ KQ++++K Q+ D LL F+ G FYE Y DA G + L +T G+
Sbjct: 6 KGLTPMMKQFFSMKRQHPDALLLFRCGDFYETYGDDAIEGSRILGITLTKRNNGGNSGET 65
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLE----TSEQAKARH----TNSVISRKLVNV 375
G +D + KL+ G +V +QLE E+ K + T+ ++ R + +
Sbjct: 66 AMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSATDKMVKRGITEL 125
Query: 376 VTPSTTVDGTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASC 433
VTP + + L KE N G G +F+D + G D
Sbjct: 126 VTPGVAMGDNV-------LNYKENNFLAAVHFGKAACGVSFLDISTGEFLTGEGTYDYVE 178
Query: 434 AALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493
LG+ +PKEV+Y+ + + F EL + F + S ++L
Sbjct: 179 KLLGSF----APKEVLYDR----NDKRNFDTHFGTKYCVFELEDWV----FTEQSARQRL 226
Query: 494 VQ------LNGYFNGSSSPWSKALENVMQH-DIGFSALGGLISHLSRLMLDDVLRNGDIL 546
++ L G+ A ++Q+ +I G I+ L+R+ + +R
Sbjct: 227 LKHFGTKSLKGFGVEHMKSGIVASGAILQYLEITQHTNIGHITSLARIEEERYVRLDKFT 286
Query: 547 PYKV-YRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
+ + D ++ G++L +D +T G R+LR W+ PLKDV I RLDVV+Y K
Sbjct: 287 IHSLELIDTMQEGGRSLLNIIDKTITPMGGRMLRRWMVFPLKDVTPIQQRLDVVDYFFKA 346
Query: 604 SEVVMVVAQYLRKLPDLERLLGRV 627
+ +V + +++ DLER++ +V
Sbjct: 347 PDFRQLVGEQFQRIGDLERIISKV 370
>gi|333997850|ref|YP_004530462.1| DNA mismatch repair protein MutS [Treponema primitia ZAS-2]
gi|333739864|gb|AEF85354.1| DNA mismatch repair protein MutS [Treponema primitia ZAS-2]
Length = 906
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 140/229 (61%), Gaps = 16/229 (6%)
Query: 791 LKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
L+I+ HP GG +PND++L E L+TGPNM GKST LR L
Sbjct: 568 LEIREGRHPVVEAHLPGGEFIPNDVILEEGG----VVFALITGPNMAGKSTYLRQAALIA 623
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ G FVP + + D I+ R+GA+D + GESTFLVE ETA +L AT+ S+VI
Sbjct: 624 IMAQSGSFVPAREAKIGVTDRIYCRVGASDNLARGESTFLVEMNETAHILNTATERSMVI 683
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGT T+DG +IA+AV +L++RI CR LFATHYH L SHPH+ + M
Sbjct: 684 MDEVGRGTGTYDGLSIAWAVCEELLDRIKCRTLFATHYHELA--LLSHPHLANRSM---- 737
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
E ++G E+VFL +L G ESYGL VA +AG+ ++V+ A+
Sbjct: 738 ----EVLNQGG-EIVFLRKLKEGPAAESYGLHVARLAGLSEEVLRRAAE 781
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D T+ G+RLL+ I HPL+D+ I RLD+VE L ++ + + + L K PDLERL
Sbjct: 274 MDETKTAMGRRLLKRRILHPLRDLGRIKARLDMVEALYRDQGRLTELRELLGKTPDLERL 333
Query: 624 LGRV 627
R+
Sbjct: 334 CSRL 337
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKIT-LSGVGKCRQVGISESGIDDAVEKLVARGYK 346
+LFF++G FYE++ DA L+ +T +GV C GI + +L+ G K
Sbjct: 1 MLFFRLGDFYEMFSDDALEVSALLNLTLTNRNGVPMC---GIPYHAARSYIARLLKFGKK 57
Query: 347 VGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
+ EQL +E K R +I RK+V V+TP TTVD
Sbjct: 58 IAICEQL--TEAGKGR---GIIERKVVEVITPGTTVD 89
>gi|358394352|gb|EHK43745.1| hypothetical protein TRIATDRAFT_127655 [Trichoderma atroviride IMI
206040]
Length = 925
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 162/295 (54%), Gaps = 11/295 (3%)
Query: 726 TLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
T S L+ ++ AS + V+ ++ VL V S+S A+H P P +
Sbjct: 566 TQSSLVNEVVQVASSYCPVLERLA--GVLAHLDVIVSLSHAAVHAP---DAYVRPKIHTR 620
Query: 786 NGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRAT 845
G K+ G HP ++ + ND+ L D + ++TGPNMGGKST +R
Sbjct: 621 GEGQT-KLLGARHPCMELQDDVQFITNDVELTRDQSSFI----IITGPNMGGKSTYIRQA 675
Query: 846 CLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905
+ ++AQ+G FVPC L++ D+I R+GA+D + G STF+ E ETA++L+ AT +
Sbjct: 676 GVIALMAQVGSFVPCSEAELTIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAE 735
Query: 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHM 965
SL+I+DELGRGTST+DG+ +A+A+ +V+ I C +FATH+H LT +P V H+
Sbjct: 736 SLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFAMFATHFHELTALADQYPQVKNMHV 795
Query: 966 ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
A S + +E+ LY++ G C +S+G+ VA + P KVV A A
Sbjct: 796 T-AHISGTNGDVNAKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKA 849
>gi|339493486|ref|YP_004713779.1| DNA mismatch repair protein mutS [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338800858|gb|AEJ04690.1| DNA mismatch repair protein mutS [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 859
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 168/287 (58%), Gaps = 29/287 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E+ I + E A++ +DVL + A A + ++RP + Q P +R + G
Sbjct: 534 LLEMLIGHLAPLQESAAALAELDVLSNLAERAL--NLDLNRPRFVEQ---PCLRIEQGRH 588
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L PF V ND+ L DD R L++TGPNMGGKST +R T L V
Sbjct: 589 PVVEQVLETPF---------VANDLAL----DDAT-RMLVITGPNMGGKSTYMRQTALIV 634
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LAQ+G FVP C LSL D IFTR+G++D + G STF+VE +ETA++L A+ SLV+
Sbjct: 635 LLAQIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVL 694
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++A+A QL R+ LFATHY LT S P V H++
Sbjct: 695 MDEVGRGTSTFDGLSLAWAAAEQLA-RLRAFTLFATHYFELTVLPESEPVVANVHLSA-- 751
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ ++ +VFL+ + G +SYGL VA +AGVP +V++ A
Sbjct: 752 -------TEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPGEVIQRA 791
Score = 80.5 bits (197), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 170/391 (43%), Gaps = 56/391 (14%)
Query: 263 PPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK 322
P L + +QYW +K ++ D L+F+++G FYEL+ DA+ LD ITL+ G+
Sbjct: 4 PNADLSAHTPMMQQYWRLKREHPDQLMFYRMGDFYELFYDDAKKAAALLD--ITLTARGQ 61
Query: 323 CRQVGISESGID-DAVEKLVARGYKVGRIEQLETSEQ-AKARHTNSVISRKLVNVVTPST 380
I +GI + E +AR K+G E + EQ + + R++V ++TP T
Sbjct: 62 SAGTAIPMAGIPFHSAEGYLARLVKLG--ESVVICEQIGDPAASKGPVERQVVRIITPGT 119
Query: 381 TVDGTIGPDAV-HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
D + + +LLA G+ ++G + +D A+ R V + L A
Sbjct: 120 VSDEALLDERRDNLLAAVVGD------ERLFGLSVLDIASGRFSVQELK---GWETLLAE 170
Query: 440 LMQVSPKEVIY-----------ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488
L ++SP E++ + RG+C+ +A F SA L + D L
Sbjct: 171 LERLSPAELLIPDDWPQGLPLEKRRGVCR---RAPWDFDRDSAFKSLCQQFSTQD-LKGF 226
Query: 489 EVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPY 548
+ L G G ++K + +AL L S + D V+ +G
Sbjct: 227 GCENLTLAIGA-AGCLLAYAKETQR--------TALPHLRSLRHERLDDTVILDG----- 272
Query: 549 KVYRDCLRMD-------GQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
R L +D TL +D C T+ G RLL W+ PL++ E + R D +
Sbjct: 273 -ASRRNLELDVNLSGGRDNTLQSVMDRCQTAMGSRLLTRWLNRPLRNREILEARQDSITC 331
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
L+++ + Q L+ + DLER+L R+ R
Sbjct: 332 LLEHYRFEQLQPQ-LKDIGDLERILARIGLR 361
>gi|295659293|ref|XP_002790205.1| DNA mismatch repair protein msh-2 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226281910|gb|EEH37476.1| DNA mismatch repair protein msh-2 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 941
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 156/279 (55%), Gaps = 20/279 (7%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
++ +DV+ SFA + + A RP I P+ G +LK HP ++
Sbjct: 592 LAHLDVIVSFAHVSVHAPSAYVRPKIHPRG--------TGNTILK--EARHPCMEMQDDI 641
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
+ ND+ L + L ++TGPNMGGKST +R + ++AQ GCFVPC L++
Sbjct: 642 SFITNDVSLLRNESSFL----IITGPNMGGKSTYIRQIGVIALMAQTGCFVPCSEAELTI 697
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D+I R+GA+D + G STF+ E ETA++L+ AT +SL+I+DELGRGTST+DG+ +A+
Sbjct: 698 FDSILARVGASDSQLKGVSTFMAEMLETANILKSATSESLIIIDELGRGTSTYDGFGLAW 757
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGD------Q 981
A+ ++ I C LFATH+H LT +P AF S+ ++ + D +
Sbjct: 758 AISEHIITEIRCFALFATHFHELTALQDRYPKSVKNLHVVAFISDGKDAKQNDSADRKKR 817
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
E+ LYR+ G C +S+G+ VA + P+KVV A A
Sbjct: 818 EVTLLYRVEPGVCDQSFGIHVAELVRFPEKVVNMARQKA 856
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLER 622
L+ C T G RLL W+ PL + I R +VE + ++E+ + + LR +PDL R
Sbjct: 322 LNHCKTPVGSRLLAQWLKQPLMNHADIEKRQQLVEAFVVDTELRQTMQEDQLRSIPDLYR 381
Query: 623 LLGR 626
L R
Sbjct: 382 LAKR 385
>gi|164657614|ref|XP_001729933.1| hypothetical protein MGL_2919 [Malassezia globosa CBS 7966]
gi|159103827|gb|EDP42719.1| hypothetical protein MGL_2919 [Malassezia globosa CBS 7966]
Length = 1172
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 211/420 (50%), Gaps = 43/420 (10%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
IRD + RP D YDKRTLYIPP A K + +KQ+W +K Q+ D +LFF+ GKFYELYE
Sbjct: 269 IRDKDMNRPGDMNYDKRTLYIPPSAWKSFTPFEKQFWEIKQQHWDTVLFFQKGKFYELYE 328
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQA-- 359
DA IGH+E D K+T K + VG+ E+ D KL+A GYKVGR++Q ET+
Sbjct: 329 EDALIGHRECDLKLT--DRVKMKMVGVPEASFDMFATKLLALGYKVGRVDQCETAVAKGM 386
Query: 360 ----KARHTNS-VISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYGF 412
K+R S ++ R+L +VVT T VDG++ D + + ++IKE + P +G +G
Sbjct: 387 RVGEKSRGGGSDIVRRELRHVVTSGTIVDGSVLADDLSSYCISIKE-HVLP-SGLSEFGI 444
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
+D A + DDA + L LL + KEV++E + + +R +
Sbjct: 445 CTLDAATAEFRYMSFEDDAVLSQLETLLRSLRIKEVLHEKGVMSPSTLRLIR--NTVPTT 502
Query: 473 LELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLS 532
++T T+FLD E+ +L F+ + E Q + ALGGL+ +L
Sbjct: 503 CQITMLKPDTEFLD--EISTRARLAHLFDSVPDGLAPLAE---QGGLALCALGGLLWYLE 557
Query: 533 RLMLD-DVLRNGDILPYKVYRD---CLRMDGQTLY-------------------LDSCVT 569
+L LD D+ +G+ D L +D ++L L+ C T
Sbjct: 558 QLNLDTDLCASGNFQVQTAPADAQGALVLDAKSLMHLHVLQNDEGSDEGTLHRLLNRCTT 617
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
G+RL + W+ PL +E I RLD V+ L N + + LPDLERL R+ A
Sbjct: 618 PFGRRLFKLWLSSPLSKIEAIEARLDAVDDLRANPAWADAFDAFAKSLPDLERLQSRIAA 677
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 160/287 (55%), Gaps = 24/287 (8%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + ++ I +++ +D L S A SS A+ P P+ V+QD+ + +
Sbjct: 862 FRQDLPSYARAIRSVAQLDCLVSLA----KSSMALGTPACRPE----LVQQDSA--MFRF 911
Query: 794 KGLWHP-FALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L HP A G +PND+ LG D++D ++LTG NM GKST R AVI
Sbjct: 912 TQLRHPCMAPSSLTGATEFIPNDVALGADAED----VMVLTGGNMAGKSTTARTAATAVI 967
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
LAQ+GC+VP ++ D I +R+GA D++ +STF+VE E + +L++AT SLV++
Sbjct: 968 LAQMGCYVPATHARIAPVDRIASRMGANDQLFRRQSTFMVEMLEASKILREATPRSLVLM 1027
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTSTFDG AIAYAV LV R C F THY + + ++P + +HM +
Sbjct: 1028 DELGRGTSTFDGQAIAYAVLYHLVARSQCLCFFMTHYTTMAQSLDTYPRLANRHMEV--R 1085
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
+ E+ + +VF YRL G SYG QVA +AGVP + AS
Sbjct: 1086 VDDEH-----RHVVFTYRLVPGVAESSYGTQVAHIAGVPADICAKAS 1127
>gi|146281879|ref|YP_001172032.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri A1501]
gi|145570084|gb|ABP79190.1| DNA mismatch repair protein MutS [Pseudomonas stutzeri A1501]
Length = 891
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 168/287 (58%), Gaps = 29/287 (10%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E+ I + E A++ +DVL + A A + ++RP + Q P +R + G
Sbjct: 566 LLEMLIGHLAPLQESAAALAELDVLSNLAERAL--NLDLNRPRFVEQ---PCLRIEQGRH 620
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L PF V ND+ L DD R L++TGPNMGGKST +R T L V
Sbjct: 621 PVVEQVLETPF---------VANDLAL----DDAT-RMLVITGPNMGGKSTYMRQTALIV 666
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LAQ+G FVP C LSL D IFTR+G++D + G STF+VE +ETA++L A+ SLV+
Sbjct: 667 LLAQIGSFVPAAACELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNASDRSLVL 726
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTSTFDG ++A+A QL R+ LFATHY LT S P V H++
Sbjct: 727 MDEVGRGTSTFDGLSLAWAAAEQLA-RLRAFTLFATHYFELTVLPESEPVVANVHLSA-- 783
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
++ ++ +VFL+ + G +SYGL VA +AGVP +V++ A
Sbjct: 784 -------TEHNERIVFLHHVLPGPASQSYGLAVAQLAGVPGEVIQRA 823
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 111/416 (26%), Positives = 182/416 (43%), Gaps = 63/416 (15%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEA----LKKMSASQKQYWNVKSQYMDVLLFFKVGKFY 297
+R RRR P +RT P L + +QYW +K ++ D L+F+++G FY
Sbjct: 14 VRQLTRRRCLRP---QRTTPTPMTKSNADLSAHTPMMQQYWKLKREHPDQLMFYRMGDFY 70
Query: 298 ELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID-DAVEKLVARGYKVGRIEQLETS 356
EL+ DA+ LD ITL+ G+ I +GI + E +AR K+G E +
Sbjct: 71 ELFYDDAKKAAALLD--ITLTARGQSAGTAIPMAGIPFHSAEGYLARLVKLG--ESVVIC 126
Query: 357 EQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAV-HLLAIKEGNCGPDNGSVVYGFAF 414
EQ T+ + R++V ++TP T D + + +LLA G+ ++G +
Sbjct: 127 EQIGDPATSKGPVERQVVRIITPGTVSDEALLDERRDNLLAAVVGD------EKLFGLSV 180
Query: 415 VDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN---RGLCKEAQKALRKFSAGSA 471
+D A+ R V + L A L ++SP E++ + +GL E ++ +R+
Sbjct: 181 LDIASGRFSVQELK---GWETLLAELERLSPAELLIPDDWPQGLPLEKRRGVRR------ 231
Query: 472 ALELTPAMAVTDFLDASEVKKLVQ------LNGYF--NGSSSPWSKALENVMQHDIGFSA 523
A DF S K L Q L G+ N + + + + +A
Sbjct: 232 -------RAPWDFDRDSAFKSLCQQFSTQDLKGFGCENLTLAIGAAGCLLAYAKETQRTA 284
Query: 524 LGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD-------GQTL--YLDSCVTSSGKR 574
L L S + D V+ +G R L +D TL +D C T+ G R
Sbjct: 285 LPHLRSLRHERLDDTVILDG------ASRRNLELDVNLAGGRENTLQSVMDRCQTAMGSR 338
Query: 575 LLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630
LL W+ PL++ E + R D + L+++ + Q L+ + DLER+L R+ R
Sbjct: 339 LLTRWLNRPLRNREILEARQDSITCLLEHYRFEQLQPQ-LKDIGDLERILARIGLR 393
>gi|448664403|ref|ZP_21684206.1| DNA mismatch repair protein MutS [Haloarcula amylolytica JCM 13557]
gi|445775048|gb|EMA26062.1| DNA mismatch repair protein MutS [Haloarcula amylolytica JCM 13557]
Length = 921
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 158/293 (53%), Gaps = 24/293 (8%)
Query: 721 DLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNP 780
D++ E L E+A+ +V A++ +D S AV A + P
Sbjct: 529 DMEYERFQTLRGRVAERATLLQDVGRALAELDAFASLAVHA-----------VENDWTRP 577
Query: 781 AVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKST 840
AV + N L I+ HP E VPND+ + +D + L++TGPNM GKST
Sbjct: 578 AVVEGN---ELSIEAGRHPVV--EQTTEFVPNDLYMDDDR-----QFLIVTGPNMSGKST 627
Query: 841 LLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900
+R L +LAQ+G FVP + L D IFTR+GA D + G STF+VE E +++L
Sbjct: 628 YMRQAALITLLAQVGSFVPARSATVGLVDGIFTRVGALDELAQGRSTFMVEMQELSNILH 687
Query: 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960
AT +SLVILDE+GRGT+TFDG +IA+A +V I + LFATHYH LT P V
Sbjct: 688 SATDESLVILDEVGRGTATFDGISIAWAATEYIVNSIQSKTLFATHYHELTALGEELPAV 747
Query: 961 TLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
H+A + S ++GD ++ FL + G SYG+ VA +AGVP+ VV
Sbjct: 748 ENVHVAVDGEPRS---AEGDGDVTFLRTVRDGPTDRSYGVHVADLAGVPEPVV 797
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 161/430 (37%), Gaps = 72/430 (16%)
Query: 288 LLFFKVGKFYELYELDAEIGHKELDWKITL--SGVGKCRQVGISESGIDDAVEKLVARGY 345
LL + G FYE + DAEI ELD K++ S G+ + V LV RGY
Sbjct: 22 LLAMQCGDFYEFFAEDAEIVADELDLKVSQKSSHGSSYPMAGVPVDDLTPYVSALVERGY 81
Query: 346 KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDN 405
+V +Q ET E A R++ VVTP T ++ G ++ LA D
Sbjct: 82 RVAIADQHET-ENGHA--------REITRVVTPGTHLE--TGDESAQYLAAVVRETSRDG 130
Query: 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRK 465
G YG A D + V ++D + AL L +P E++ L + + R
Sbjct: 131 GD-TYGIAATDVTTGQFQVTQLDDADAGEALTELYT-FAPAEIL-PGPELRNDDEFLDRL 187
Query: 466 FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALG 525
AAL L + + + V++ Q G S + D+ A G
Sbjct: 188 RERTGAALTLHDSASFEPGRASHTVRE--QFGGETVDSV--------GIGDQDVAVQAAG 237
Query: 526 GLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQT-----------------LY--LDS 566
++S++ + + + Y RD + +D T L+ +D
Sbjct: 238 AVLSYVEDTGVGTLAAVTRLQAYG-ERDHVDLDATTQRNLELTETMQGDSSGSLFDTIDH 296
Query: 567 CVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
VT++G RLL+ W+ P ++ + R V L + + + + L DLERL R
Sbjct: 297 TVTAAGGRLLQQWLQRPRRNRAELRRRQSCVAALSEAAMARERIRETLSDAYDLERLAAR 356
Query: 627 VKARVQASSCIVLPLIGKKVLKQQVKVFGSL-VKGLRIAMDLLMLMHKEGHIIPSLSRIF 685
+ GS + LR + L L+ + + R+
Sbjct: 357 ATS-------------------------GSADARDLRAVEETLALLGQVADAVTETERLA 391
Query: 686 KPPIFDGSDG 695
+ P+ D DG
Sbjct: 392 ESPLADALDG 401
>gi|355628056|ref|ZP_09049571.1| DNA mismatch repair protein mutS [Clostridium sp. 7_3_54FAA]
gi|354819949|gb|EHF04381.1| DNA mismatch repair protein mutS [Clostridium sp. 7_3_54FAA]
Length = 886
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 165/283 (58%), Gaps = 30/283 (10%)
Query: 737 KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGL 796
+ + E HA++ DVL S +V A ++ P++ N ++ IK
Sbjct: 542 EVKRIQETAHAVALTDVLTSLSVVAVRNNYV-----------KPSI---NEKGIIHIKNG 587
Query: 797 WHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
HP +GG+ V ND L D+ R ++TGPNM GKST +R T L ++AQ+G
Sbjct: 588 RHPVVEQMMSGGMFVANDTYL----DNGKNRVSIITGPNMAGKSTYMRQTALITLMAQVG 643
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
FVP + + L D IFTR+GA+D + +G+STF+VE TE A++L+ AT+ SL+ILDE+GR
Sbjct: 644 SFVPADEADIGLCDRIFTRVGASDDLASGQSTFMVEMTEVANILRNATRSSLLILDEIGR 703
Query: 916 GTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GTSTFDG +IA+AV + + + + LFATHYH LT+ + V + A K
Sbjct: 704 GTSTFDGLSIAWAVVEYISNTKLLGAKTLFATHYHELTELEGTMSGV--NNYCIAVK--- 758
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+GD ++VFL ++ G +SYG+QVA +AGVP+ V+E A
Sbjct: 759 ---EQGD-DIVFLRKIVKGGADKSYGIQVAKLAGVPELVIERA 797
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 169/391 (43%), Gaps = 62/391 (15%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ ++S QY K QY D +LF+++G FYE++ DA +EL+ +T G +
Sbjct: 1 MAQLSPMMTQYLETKKQYPDCILFYRLGDFYEMFFEDALTASRELEITLTGKDCGLEERA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ + KLV +GYKV EQ+E + AK ++ R+++ VVTP T +
Sbjct: 61 PMCGVPYHALEGYLSKLVQKGYKVAIGEQVEDPKTAKG-----LVKREVIRVVTPGTITN 115
Query: 384 GTIGPDAVHLLAIKEGNCGPDNGSV----VYGFAFVDCAALRVWVGTINDDASCAALGAL 439
A++E G V ++G + D + V + + + L
Sbjct: 116 SQ---------ALEESKNNYLMGIVYTDGIFGISVADVSTGDYLVTEVKSERN---LIDE 163
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAM--AVTD----FLDASEVKKL 493
+ + SP E+I C EA + +G +L + ++D F +KL
Sbjct: 164 IYKFSPSEII------CNEA-----FYMSGIDLDDLKNRLHAVISDLDNRFFSDEFCRKL 212
Query: 494 VQ-------LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR---------LMLD 537
++ L G + A V+Q+ + + HL+R +MLD
Sbjct: 213 LRDHFHVENLEGLGLSDYETGTIAAGAVLQY--LYETQKNSLEHLTRITPYTTGQFMMLD 270
Query: 538 -DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDV 596
RN +++ + R+ + LD T+ G R+LRS++ PL E I R +
Sbjct: 271 TSTRRNLELI--ETLREKQKRGTLLWVLDKTKTAMGARMLRSFVEQPLIHKEEILKRQNA 328
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+E L N + +YL + DLERLLGR+
Sbjct: 329 IEELNMNYISREEICEYLNPIYDLERLLGRI 359
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,707,488,168
Number of Sequences: 23463169
Number of extensions: 701381324
Number of successful extensions: 1868496
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8726
Number of HSP's successfully gapped in prelim test: 1865
Number of HSP's that attempted gapping in prelim test: 1827109
Number of HSP's gapped (non-prelim): 23196
length of query: 1085
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 931
effective length of database: 8,745,867,341
effective search space: 8142402494471
effective search space used: 8142402494471
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)