BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040956
(1085 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP
BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE T
INSERT
Length = 1022
Score = 252 bits (643), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 702 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 753
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 754 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 813
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 814 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 873
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 874 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 933
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 934 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987
Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 32 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 91
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 92 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 148
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 149 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 208
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 209 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 268
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 269 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 325
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 326 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 385
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 386 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 445
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 446 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 487
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 222 bits (566), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 239/832 (28%), Positives = 374/832 (44%), Gaps = 170/832 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT--LSGVGKCRQVGISESG 332
+QY ++ QY D LL F+VG FYE + DAE + L +T S GI
Sbjct: 18 QQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRA 77
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP-DAV 391
+ E+L+ G+++ +Q+E +E+A+ ++ R++ ++TP T + ++ P +A
Sbjct: 78 FEAYAERLLKMGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESLLPREAN 132
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L AI G+ +G AF+D + + GT+ S +AL L + P EV+
Sbjct: 133 YLAAIATGDG--------WGLAFLDVSTGE-FKGTVLK--SKSALYDELFRHRPAEVL-- 179
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTD-FLDASEVKKLVQLNGYFNGSSSPWSKA 510
L P + FLD + V L S +P+
Sbjct: 180 -----------------------LAPELLENGAFLDEFRKRFPVML------SEAPFEPE 210
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY---------RDCLR----- 556
E + A G L+++ R + + P++ Y LR
Sbjct: 211 GEGPLALR---RARGALLAYAQRTQGGAL----SLQPFRFYDPGAFMRLPEATLRALEVF 263
Query: 557 --MDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ GQ TL+ LD T+ G+RLL+SW+ HPL D + RLD VE ++ + V
Sbjct: 264 EPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVR 323
Query: 612 QYLRKLPDLERL-----LGRVKAR---VQASSCIVLP----LIGKKV-------LKQQVK 652
+ L +L DLERL LGR + S +LP L+G++V LK++++
Sbjct: 324 RLLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELE 383
Query: 653 VF-----------GSLVK-GLRIAMDLLMLMHKEGHI--------------IPSLSRIFK 686
G L++ G +D L H+EG IP+L +
Sbjct: 384 AALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYN 443
Query: 687 P----------PIFDGSDGLDKFLTQFEAAIDSDFPDYQN--HDVTDLDAETLSILIELF 734
P ++ + + + P+ + +V L+A E+F
Sbjct: 444 AVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVF 503
Query: 735 IE---KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
+E +A + +E + + I L V A+++ A+ + P+ G L
Sbjct: 504 LEVRERAKRQAEALREAARI--LAELDVYAALAEVAVRYGYVRPRF----------GDRL 551
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
+I+ HP E VPND+ + + +L+TGPNM GKST LR T L +L
Sbjct: 552 QIRAGRHPVV--ERRTEFVPNDLEMAHE-------LVLITGPNMAGKSTFLRQTALIALL 602
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+G FVP E L L D I+TR+GA+D + G+STF+VE E A +L++AT++SLV+LD
Sbjct: 603 AQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLD 662
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
E+GRGTS+ DG AIA AV L ER LFATHY LT P + H+A ++
Sbjct: 663 EVGRGTSSLDGVAIATAVAEALHER-RAYTLFATHYFELTA--LGLPRLKNLHVAAREEA 719
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023
LVF +++ G +SYG++VA MAG+P++VV A AM
Sbjct: 720 GG---------LVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAM 762
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna
At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex Dna
At 2.2 A Resolution
Length = 765
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 235/822 (28%), Positives = 369/822 (44%), Gaps = 170/822 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT--LSGVGKCRQVGISESG 332
+QY ++ QY D LL F+VG FYE + DAE + L +T S GI
Sbjct: 18 QQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPXAGIPLRA 77
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP-DAV 391
+ E+L+ G+++ +Q+E +E+A+ ++ R++ ++TP T + ++ P +A
Sbjct: 78 FEAYAERLLKXGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESLLPREAN 132
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L AI G+ +G AF+D + + GT+ S +AL L + P EV+
Sbjct: 133 YLAAIATGDG--------WGLAFLDVSTGE-FKGTVLK--SKSALYDELFRHRPAEVL-- 179
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTD-FLDASEVKKLVQLNGYFNGSSSPWSKA 510
L P + FLD + V L S +P+
Sbjct: 180 -----------------------LAPELLENGAFLDEFRKRFPVXL------SEAPFEPE 210
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY---------RDCLR----- 556
E + A G L+++ R + + P++ Y LR
Sbjct: 211 GEGPLALR---RARGALLAYAQRTQGGAL----SLQPFRFYDPGAFXRLPEATLRALEVF 263
Query: 557 --MDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ GQ TL+ LD T+ G+RLL+SW+ HPL D + RLD VE ++ + V
Sbjct: 264 EPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVR 323
Query: 612 QYLRKLPDLERL-----LGRVKAR---VQASSCIVLP----LIGKKV-------LKQQVK 652
+ L +L DLERL LGR + S +LP L+G++V LK++++
Sbjct: 324 RLLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELE 383
Query: 653 VF-----------GSLVK-GLRIAMDLLMLMHKEGHI--------------IPSLSRIFK 686
G L++ G +D L H+EG IP+L +
Sbjct: 384 AALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYN 443
Query: 687 P----------PIFDGSDGLDKFLTQFEAAIDSDFPDYQN--HDVTDLDAETLSILIELF 734
P ++ + + + P+ + +V L+A E+F
Sbjct: 444 AVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEXKEKEREVYRLEALIRRREEEVF 503
Query: 735 IE---KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
+E +A + +E + + I L V A+++ A+ + P+ G L
Sbjct: 504 LEVRERAKRQAEALREAARI--LAELDVYAALAEVAVRYGYVRPRF----------GDRL 551
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
+I+ HP E VPND+ E + + + L+TGPN GKST LR T L +L
Sbjct: 552 QIRAGRHPVV--ERRTEFVPNDL---EXAHELV----LITGPNXAGKSTFLRQTALIALL 602
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+G FVP E L L D I+TR+GA+D + G+STF VE E A +L++AT++SLV+LD
Sbjct: 603 AQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLD 662
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
E+GRGTS+ DG AIA AV L ER LFATHY LT P + H+A ++
Sbjct: 663 EVGRGTSSLDGVAIATAVAEALHER-RAYTLFATHYFELTA--LGLPRLKNLHVAAREEA 719
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
LVF +++ G +SYG++VA AG+P++VV
Sbjct: 720 GG---------LVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 235/822 (28%), Positives = 369/822 (44%), Gaps = 170/822 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT--LSGVGKCRQVGISESG 332
+QY ++ QY D LL F+VG FYE + DAE + L +T S GI
Sbjct: 18 QQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPXAGIPLRA 77
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP-DAV 391
+ E+L+ G+++ +Q+E +E+A+ ++ R++ ++TP T + ++ P +A
Sbjct: 78 FEAYAERLLKXGFRLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESLLPREAN 132
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L AI G+ +G AF+D + + GT+ S +AL L + P EV+
Sbjct: 133 YLAAIATGDG--------WGLAFLDVSTGE-FKGTVLK--SKSALYDELFRHRPAEVL-- 179
Query: 452 NRGLCKEAQKALRKFSAGSAALELTPAMAVTD-FLDASEVKKLVQLNGYFNGSSSPWSKA 510
L P + FLD + V L S +P+
Sbjct: 180 -----------------------LAPELLENGAFLDEFRKRFPVXL------SEAPFEPE 210
Query: 511 LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVY---------RDCLR----- 556
E + A G L+++ R + + P++ Y LR
Sbjct: 211 GEGPLALR---RARGALLAYAQRTQGGAL----SLQPFRFYDPGAFXRLPEATLRALEVF 263
Query: 557 --MDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ GQ TL+ LD T+ G+RLL+SW+ HPL D + RLD VE ++ + V
Sbjct: 264 EPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVR 323
Query: 612 QYLRKLPDLERL-----LGRVKAR---VQASSCIVLP----LIGKKV-------LKQQVK 652
+ L +L DLERL LGR + S +LP L+G++V LK++++
Sbjct: 324 RLLYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELE 383
Query: 653 VF-----------GSLVK-GLRIAMDLLMLMHKEGHI--------------IPSLSRIFK 686
G L++ G +D L H+EG IP+L +
Sbjct: 384 AALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYN 443
Query: 687 P----------PIFDGSDGLDKFLTQFEAAIDSDFPDYQN--HDVTDLDAETLSILIELF 734
P ++ + + + P+ + +V L+A E+F
Sbjct: 444 AVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEXKEKEREVYRLEALIRRREEEVF 503
Query: 735 IE---KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791
+E +A + +E + + I L V A+++ A+ + P+ G L
Sbjct: 504 LEVRERAKRQAEALREAARI--LAELDVYAALAEVAVRYGYVRPRF----------GDRL 551
Query: 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL 851
+I+ HP E VPND+ E + + + L+TGPN GKST LR T L +L
Sbjct: 552 QIRAGRHPVV--ERRTEFVPNDL---EXAHELV----LITGPNXAGKSTFLRQTALIALL 602
Query: 852 AQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911
AQ+G FVP E L L D I+TR+GA+D + G+STF VE E A +L++AT++SLV+LD
Sbjct: 603 AQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLD 662
Query: 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971
E+GRGTS+ DG AIA AV L ER LFATHY LT P + H+A ++
Sbjct: 663 EVGRGTSSLDGVAIATAVAEALHER-RAYTLFATHYFELTA--LGLPRLKNLHVAAREEA 719
Query: 972 NSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
LVF +++ G +SYG++VA AG+P++VV
Sbjct: 720 GG---------LVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And
Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3) And
Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2) And
Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6) And
Adp
Length = 918
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 176/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 584 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 638
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 639 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 686
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G STF+ E T+TA +
Sbjct: 687 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEI 746
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 747 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 806
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 807 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 866
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 867 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 898
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 183/430 (42%), Gaps = 75/430 (17%)
Query: 243 RDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYEL 302
+ AN+R +++Y P E QY +K Q+ D +L + G Y +
Sbjct: 3 KSANKR--------SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGE 45
Query: 303 DAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKA 361
DAEI +EL+ L I + V +LVA+GYKVG ++Q ET+ +A
Sbjct: 46 DAEIAARELNIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIG 103
Query: 362 RHTNSVISRKLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNC 401
+ +S+ SRKL + T ST + + P DAV +LL I KE
Sbjct: 104 DNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVR 163
Query: 402 GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461
G++ G V A V + D AS + L + + P E++ + L ++ +
Sbjct: 164 DKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEA 222
Query: 462 ALRKFSAGSAA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---- 501
+ + ++ S E + A AVT+F D ++K ++G N
Sbjct: 223 LIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKP 282
Query: 502 -----GSSSPWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
+ + K LE ++ F L + ++ + LRN +IL +
Sbjct: 283 VICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---D 337
Query: 555 LRMDGQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQ 612
++ G L+ LD TS G+R L+ W+ PL + IN RLD V E L S V +
Sbjct: 338 MKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN 397
Query: 613 YLRKLPDLER 622
+LRKLPD+ER
Sbjct: 398 HLRKLPDIER 407
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 166/520 (31%), Positives = 250/520 (48%), Gaps = 96/520 (18%)
Query: 557 MDGQ-TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQY 613
+ GQ TL+ LD T+ G+RLL+SW+ HPL D + RLD VE ++ + V +
Sbjct: 150 LRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRL 209
Query: 614 LRKLPDLERL-----LGRVKAR---VQASSCIVLP----LIGKKV-------LKQQVKVF 654
L +L DLERL LGR + S +LP L+G++V LK++++
Sbjct: 210 LYRLADLERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDLSPLKEELEAA 269
Query: 655 -----------GSLVK-GLRIAMDLLMLMHKEGHI--------------IPSLSRIFKP- 687
G L++ G +D L H+EG IP+L +
Sbjct: 270 LVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNAV 329
Query: 688 ---------PIFDGSDGLDKFLTQFEAAIDSDFPDYQN--HDVTDLDAETLSILIELFIE 736
P ++ + + + P+ + +V L+A E+F+E
Sbjct: 330 FGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLE 389
Query: 737 ---KASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
+A + +E + + I L V A+++ A+ + P+ G L+I
Sbjct: 390 VRERAKRQAEALREAARI--LAELDVYAALAEVAVRYGYVRPRF----------GDRLQI 437
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ HP E VPND+ E + + + L+TGPN GKST LR T L +LAQ
Sbjct: 438 RAGRHPVV--ERRTEFVPNDL---EXAHELV----LITGPNXAGKSTFLRQTALIALLAQ 488
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
+G FVP E L L D I+TR+GA+D + G+STF VE E A +L++AT++SLV+LDE+
Sbjct: 489 VGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALILKEATENSLVLLDEV 548
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTS+ DG AIA AV L ER LFATHY LT P + H+A ++
Sbjct: 549 GRGTSSLDGVAIATAVAEALHER-RAYTLFATHYFELTA--LGLPRLKNLHVAAREEAGG 605
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
LVF +++ G +SYG++VA AG+P++VV
Sbjct: 606 ---------LVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 636
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP
BOUND TO Msh2 Only
Length = 934
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 146/253 (57%), Gaps = 16/253 (6%)
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
PA+ + G ++ +K H ++ +PND+ +D ++TGPNMGGKS
Sbjct: 622 PAILEKGQGRII-LKASRHACVEVQDEIAFIPNDVYFEKDKQ----MFHIITGPNMGGKS 676
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T +R T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L
Sbjct: 677 TYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASIL 736
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
+ AT+DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P
Sbjct: 737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT 796
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019
V H+ + LY++ G C +S+G+ VA +A P+ V+E A
Sbjct: 797 VNNLHVTALTTEETL---------TMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQK 847
Query: 1020 ALAMK--KSIGES 1030
AL ++ + IGES
Sbjct: 848 ALELEEFQYIGES 860
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 131/341 (38%), Gaps = 56/341 (16%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSS-SPWSKALENVMQHDIGFS 522
G L DF K + Q LN G + A+ M++ + S
Sbjct: 216 IIQRGGI---LITERKKADF----STKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVS 268
Query: 523 ALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD-------------------GQTL- 562
+L +I L L D ++ + + +++D Q+L
Sbjct: 269 SLSAVIKFLELLSDDSNFGQFELTTFD-FSQYMKLDIAAVRALNLFQGSVEDTTGSQSLA 327
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDL 620
L+ C T G+RL+ WI PL D I RL++VE ++++E+ + + LR+ PDL
Sbjct: 328 ALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDL 387
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFG--SLVKGLRIAMDLLMLMHK-EGHI 677
RL KK +Q + L +G+ +++ + K EG
Sbjct: 388 NRL-------------------AKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKH 428
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
L +F P+ D KF E +D D +NH+
Sbjct: 429 QKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMD--QVENHE 467
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE T
INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And
Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3) And
Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2) And
Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6) And
Adp
Length = 934
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 146/253 (57%), Gaps = 16/253 (6%)
Query: 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKS 839
PA+ + G ++ +K H ++ +PND+ +D ++TGPNMGGKS
Sbjct: 622 PAILEKGQGRII-LKASRHACVEVQDEIAFIPNDVYFEKDKQ----MFHIITGPNMGGKS 676
Query: 840 TLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVL 899
T +R T + V++AQ+GCFVPCE +S+ D I R+GA D + G STF+ E ETAS+L
Sbjct: 677 TYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASIL 736
Query: 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959
+ AT+DSL+I+DELGRGTST+DG+ +A+A+ + +I +FATH+H LT P
Sbjct: 737 RSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT 796
Query: 960 VTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019
V H+ + LY++ G C +S+G+ VA +A P+ V+E A
Sbjct: 797 VNNLHVTALTTEETL---------TMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQK 847
Query: 1020 ALAMK--KSIGES 1030
AL ++ + IGES
Sbjct: 848 ALELEEFQYIGES 860
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 131/341 (38%), Gaps = 56/341 (16%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALR 464
+G G +VD ++ + D+ + L ALL+Q+ PKE + + K +
Sbjct: 156 DGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQ 215
Query: 465 KFSAGSAALELTPAMAVTDFLDASEVKKLVQ-LNGYFNGSS-SPWSKALENVMQHDIGFS 522
G L DF K + Q LN G + A+ M++ + S
Sbjct: 216 IIQRGGI---LITERKKADF----STKDIYQDLNRLLKGKKGEQMNSAVLPEMENQVAVS 268
Query: 523 ALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD-------------------GQTL- 562
+L +I L L D ++ + + +++D Q+L
Sbjct: 269 SLSAVIKFLELLSDDSNFGQFELTTFD-FSQYMKLDIAAVRALNLFQGSVEDTTGSQSLA 327
Query: 563 -YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDL 620
L+ C T G+RL+ WI PL D I RL++VE ++++E+ + + LR+ PDL
Sbjct: 328 ALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDL 387
Query: 621 ERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFG--SLVKGLRIAMDLLMLMHK-EGHI 677
RL KK +Q + L +G+ +++ + K EG
Sbjct: 388 NRL-------------------AKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKH 428
Query: 678 IPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQNHD 718
L +F P+ D KF E +D D +NH+
Sbjct: 429 QKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMD--QVENHE 467
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP + + D IFTR+GA D + +G
Sbjct: 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT+ SLV++DE+GRGTST+DG ++A+A L +I LFAT
Sbjct: 668 STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F++ + GA +SYGL VA +
Sbjct: 728 HYFELTQLPEKMEGVANVHL--------DALEHGDT-IAFMHSVQDGAASKSYGLAVAAL 778
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 779 AGVPKEVIKRA 789
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF+++G FY+L+ DA+ + LD +T G + GI
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYQLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP T D + +
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTISDEALLQERQ 129
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L AI + + G +G+A +D ++ R +++ A + A L + +P E++
Sbjct: 130 DNLLAAIWQDSKG-------FGYATLDISSGRF---RLSEPADRETMAAELQRTNPAELL 179
Query: 450 Y 450
Y
Sbjct: 180 Y 180
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R+L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 295 LDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 351
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 352 LARLALR 358
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP + + D IFTR+GA D + +G
Sbjct: 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT+ SLV++DE+GRGTST+DG ++A+A L +I LFAT
Sbjct: 668 STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F++ + GA +SYGL VA +
Sbjct: 728 HYFELTQLPEKMEGVANVHL--------DALEHGDT-IAFMHSVQDGAASKSYGLAVAAL 778
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 779 AGVPKEVIKRA 789
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF+++G FY L+ DA+ + LD +T G + GI
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP T D + +
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTISDEALLQERQ 129
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L AI + + G +G+A +D ++ R +++ A + A L + +P E++
Sbjct: 130 DNLLAAIWQDSKG-------FGYATLDISSGRF---RLSEPADRETMAAELQRTNPAELL 179
Query: 450 Y 450
Y
Sbjct: 180 Y 180
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R+L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 295 LDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 351
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 352 LARLALR 358
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A
C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With A
C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With An
A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With An
A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A
G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With A
G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With An
Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With An
Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With A
16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With A
16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP + + D IFTR+GA D + +G
Sbjct: 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT+ SLV++DE+GRGTST+DG ++A+A L +I LFAT
Sbjct: 668 STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F++ + GA +SYGL VA +
Sbjct: 728 HYFELTQLPEKMEGVANVHL--------DALEHGDT-IAFMHSVQDGAASKSYGLAVAAL 778
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 779 AGVPKEVIKRA 789
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF+++G FYEL+ DA+ + LD +T G + GI
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP T D + +
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTISDEALLQERQ 129
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L AI + + G +G+A +D ++ R +++ A + A L + +P E++
Sbjct: 130 DNLLAAIWQDSKG-------FGYATLDISSGRF---RLSEPADRETMAAELQRTNPAELL 179
Query: 450 Y 450
Y
Sbjct: 180 Y 180
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R+L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 295 LDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 351
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 352 LARLALR 358
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP + + D IFTR+GA D + +G
Sbjct: 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT+ SLV++DE+GRGTST+DG ++A+A L +I LFAT
Sbjct: 668 STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F++ + GA +SYGL VA +
Sbjct: 728 HYFELTQLPEKMEGVANVHL--------DALEHGDT-IAFMHSVQDGAASKSYGLAVAAL 778
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 779 AGVPKEVIKRA 789
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF+++G FY L+ DA+ + LD +T G + GI
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYALFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP T D + +
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTISDEALLQERQ 129
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L AI + + G +G+A +D ++ R +++ A + A L + +P E++
Sbjct: 130 DNLLAAIWQDSKG-------FGYATLDISSGRF---RLSEPADRETMAAELQRTNPAELL 179
Query: 450 Y 450
Y
Sbjct: 180 Y 180
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R+L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 295 LDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 351
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 352 LARLALR 358
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 121/191 (63%), Gaps = 9/191 (4%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP + + D IFTR+GA D + +G
Sbjct: 607 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 666
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT+ SLV+++E+GRGTST+DG ++A+A L +I LFAT
Sbjct: 667 STFMVEMTETANILHNATEYSLVLMNEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 726
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F++ + GA +SYGL VA +
Sbjct: 727 HYFELTQLPEKMEGVANVHL--------DALEHGDT-IAFMHSVQDGAASKSYGLAVAAL 777
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 778 AGVPKEVIKRA 788
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF+++G FYEL+ DA+ + LD +T G + GI
Sbjct: 14 QQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 73
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP T D + +
Sbjct: 74 AVENYLAKLVNQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTISDEALLQERQ 128
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L AI + + G +G+A +D ++ R +++ A + A L + +P E++
Sbjct: 129 DNLLAAIWQDSKG-------FGYATLDISSGRF---RLSEPADRETMAAELQRTNPAELL 178
Query: 450 Y 450
Y
Sbjct: 179 Y 179
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R+L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 294 LDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 350
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 351 LARLALR 357
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 160 bits (404), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 120/191 (62%), Gaps = 9/191 (4%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPNMGGKST +R T L ++A +G +VP + + D IFTR+GA D + +G
Sbjct: 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF+VE TETA++L AT+ SLV++DE+G GTST+DG ++A+A L +I LFAT
Sbjct: 668 STFMVEMTETANILHNATEYSLVLMDEIGAGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F++ + GA +SYGL VA +
Sbjct: 728 HYFELTQLPEKMEGVANVHL--------DALEHGDT-IAFMHSVQDGAASKSYGLAVAAL 778
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 779 AGVPKEVIKRA 789
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF+++G FYEL+ DA+ + LD +T G + GI
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP T D + +
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTISDEALLQERQ 129
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L AI + + G +G+A +D ++ R +++ A + A L + +P E++
Sbjct: 130 DNLLAAIWQDSKG-------FGYATLDISSGRF---RLSEPADRETMAAELQRTNPAELL 179
Query: 450 Y 450
Y
Sbjct: 180 Y 180
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R+L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 295 LDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 351
Query: 624 LGRVKAR 630
L R+ R
Sbjct: 352 LARLALR 358
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A
G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With A
G:t Mismatch
Length = 800
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 9/191 (4%)
Query: 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGE 885
R L++TGPN GGKST R T L + A +G +VP + + D IFTR+GA D + +G
Sbjct: 608 RXLIITGPNXGGKSTYXRQTALIALXAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGR 667
Query: 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945
STF VE TETA++L AT+ SLV+ DE+GRGTST+DG ++A+A L +I LFAT
Sbjct: 668 STFXVEXTETANILHNATEYSLVLXDEIGRGTSTYDGLSLAWACAENLANKIKALTLFAT 727
Query: 946 HYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005
HY LT+ V H+ + GD + F + + GA +SYGL VA +
Sbjct: 728 HYFELTQLPEKXEGVANVHL--------DALEHGDT-IAFXHSVQDGAASKSYGLAVAAL 778
Query: 1006 AGVPQKVVEAA 1016
AGVP++V++ A
Sbjct: 779 AGVPKEVIKRA 789
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K+Q+ ++LLF++ G FYEL+ DA+ + LD +T G + GI
Sbjct: 15 QQYLRLKAQHPEILLFYRXGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPXAGIPYH 74
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+++ + KLV +G V EQ+ +K + RK+V +VTP T D + +
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPATSKG-----PVERKVVRIVTPGTISDEALLQERQ 129
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
L AI + + G +G+A +D ++ R + D + A A L + +P E++
Sbjct: 130 DNLLAAIWQDSKG-------FGYATLDISSGRFRLSEPADRETXA---AELQRTNPAELL 179
Query: 450 Y 450
Y
Sbjct: 180 Y 180
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
LD VT G R L+ W+ P++D + R + L + + V LR++ DLER+
Sbjct: 295 LDCTVTPXGSRXLKRWLHXPVRDTRVLLERQQTIGALQDFTAGLQPV---LRQVGDLERI 351
Query: 624 LGRVKARV 631
L R+ R
Sbjct: 352 LARLALRT 359
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 690 FDGSDGL------DKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSE 743
F SDG+ KFL + E F +Q V ++ +ET S+LI+ +I+ +
Sbjct: 95 FAASDGIVLENLASKFLREVEIIEAKKFYSFQIA-VENIHSETYSLLIDNYIKDEKERLN 153
Query: 744 VIHAISCIDVLRSFAVTAS 762
+ HAI I +++ A+ A+
Sbjct: 154 LFHAIENIPAIKNKALWAA 172
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 690 FDGSDGL------DKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSE 743
F SDG+ KFL Q + F +Q V ++ +ET S+LI+ +I+ +
Sbjct: 94 FAASDGIVLENLASKFLRQVKITEAKKFYAFQIA-VENIHSETYSLLIDNYIKDEKERMN 152
Query: 744 VIHAISCIDVLRSFAVTAS 762
+ HAI I +++ A+ A+
Sbjct: 153 LFHAIENIPAVKNKALWAA 171
>pdb|3O0Y|A Chain A, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|B Chain B, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
pdb|3O0Y|C Chain C, The Crystal Structure Of The Putative Lipoprotein From
Colwellia Psychrerythraea
Length = 609
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 323 CRQVGISESGIDDAVEKLVAR-----GYKVGRIEQLETSEQAKAR 362
Q G +ES + +E+ +A GYK+G ++ L EQAKAR
Sbjct: 529 SEQTGTAESDVVAEIERYMAWPGQALGYKLGMLKILSLREQAKAR 573
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,387,818
Number of Sequences: 62578
Number of extensions: 1282498
Number of successful extensions: 2838
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2748
Number of HSP's gapped (non-prelim): 47
length of query: 1085
length of database: 14,973,337
effective HSP length: 109
effective length of query: 976
effective length of database: 8,152,335
effective search space: 7956678960
effective search space used: 7956678960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)