BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040956
(1085 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMV7|MSH7_ARATH DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana GN=MSH7 PE=1
SV=1
Length = 1109
Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/1118 (62%), Positives = 859/1118 (76%), Gaps = 50/1118 (4%)
Query: 1 MQRQQSIHSFFQKCSPANKSG-----AADMSGARKDSNFTTKQRNPVGDSSGQPTVSATE 55
MQRQ+SI SFFQK + A G AA G F K+ + GD+S + VS +
Sbjct: 1 MQRQRSILSFFQKPTAATTKGLVSGDAASGGGGSGGPRFNVKEGDAKGDASVRFAVSKSV 60
Query: 56 DSSLEIRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQ 115
D E+RGTDTPPEKVPR++LPSGFK E SSLFS+IMHKFVKVD R + +R+ +
Sbjct: 61 D---EVRGTDTPPEKVPRRVLPSGFKPAESAGDASSLFSNIMHKFVKVDDRDCSGERSRE 117
Query: 116 HG---NSSTVCSVFGKTGDL--EASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNED 170
N S++C K D+ + S G E+++ F+ +G A V ++ D
Sbjct: 118 DVVPLNDSSLCM---KANDVIPQFRSNNGKTQ---ERNHAFSFSGRAELRSVEDIGVDGD 171
Query: 171 VSGPDTPGMHRVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADT 230
V GP+TPGM RLKR+LED + + K +LDS+KR+++LQD V G K +E +
Sbjct: 172 VPGPETPGMRPRASRLKRVLEDEMTFKEDK-VPVLDSNKRLKMLQDPVCGEK---KEVNE 227
Query: 231 TSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLF 290
+KFEWL+ S+IRDANRRRPDDPLYD++TL+IPP+ KKMSASQKQYW+VKS+YMD++LF
Sbjct: 228 GTKFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLF 287
Query: 291 FKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRI 350
FKVGKFYELYELDAE+GHKELDWK+T+SGVGKCRQVGISESGID+AV+KL+ARGYKVGRI
Sbjct: 288 FKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRI 347
Query: 351 EQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVY 410
EQLETS+QAKAR N++I RKLV V+TPST +G IGPDAVHLLAIKE S VY
Sbjct: 348 EQLETSDQAKARGANTIIPRKLVQVLTPSTASEGNIGPDAVHLLAIKEIKMELQKCSTVY 407
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AG 469
GFAFVDCAALR WVG+I+DDASCAALGALLMQVSPKEV+Y+++GL +EAQKALRK++ G
Sbjct: 408 GFAFVDCAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTG 467
Query: 470 SAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLIS 529
S A++L P V DA+ V+ +++ NGYF GSS W+ A++ + + D+ SALG LI+
Sbjct: 468 STAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVALSALGELIN 527
Query: 530 HLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVT 569
HLSRL L+DVL++GDI PY+VYR CLR+DGQT+ YLD+CV+
Sbjct: 528 HLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLDNCVS 587
Query: 570 SSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
+GKRLLR+WICHPLKDVE IN RLDVVE NSE + + QYL KLPDLERLLGR+K+
Sbjct: 588 PTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLGRIKS 647
Query: 630 RVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPI 689
V++S+ ++ L+GKKVLKQ+VK FG +VKG R +DLL+ + KE +++ L ++ K PI
Sbjct: 648 SVRSSASVLPALLGKKVLKQRVKAFGQIVKGFRSGIDLLLALQKESNMMSLLYKLCKLPI 707
Query: 690 FDGSDGLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAIS 749
G GL+ FL+QFEAAIDSDFP+YQN DVTD +AETL+ILIELFIE+A+QWSEVIH IS
Sbjct: 708 LVGKSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWSEVIHTIS 767
Query: 750 CIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP 809
C+DVLRSFA+ AS+S+G+M RP+I P+S+ Q GP+LKI+GLWHPFA+ +G LP
Sbjct: 768 CLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLP 827
Query: 810 VPNDILLGE---DSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDILLGE S PR+LLLTGPNMGGKSTLLRATCLAVI AQLGC+VPCE C +S
Sbjct: 828 VPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEIS 887
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
L DTIFTRLGA+DRIMTGESTFLVECTETASVLQ ATQDSLVILDELGRGTSTFDGYAIA
Sbjct: 888 LVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIA 947
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG-DQELVF 985
Y+VFR LVE++ CR+LFATHYHPLTKEFASHP VT +HMACAFKS S+ +G DQ+LVF
Sbjct: 948 YSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVF 1007
Query: 986 LYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
LYRLT GACPESYGLQVA+MAG+P +VVE AS AA AMK+SIGE+FKSSE RSEFSSLHE
Sbjct: 1008 LYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSELRSEFSSLHE 1067
Query: 1046 EWLKTIVNVSRVDCNSD--DDDAYDTLFCLWHELKNSY 1081
+WLK++V +SRV N+ +D YDTLFCLWHE+K+SY
Sbjct: 1068 DWLKSLVGISRVAHNNAPIGEDDYDTLFCLWHEIKSSY 1105
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
Length = 1360
Score = 253 bits (647), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 184/296 (62%), Gaps = 14/296 (4%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F + W + I+ +DVL A + G M RP+IL P P L++
Sbjct: 1040 FDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTP--------PFLEL 1091
Query: 794 KGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
KG HP G +PNDIL+G E+ ++ +L+TGPNMGGKSTL+R L
Sbjct: 1092 KGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLA 1151
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
++AQ+GC+VP E+C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L AT SLV+
Sbjct: 1152 VMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVL 1211
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ + V L HMAC
Sbjct: 1212 VDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV 1271
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A +K
Sbjct: 1272 ENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 1325
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 212/462 (45%), Gaps = 74/462 (16%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL K RD +RRRPD P +D TLY+P + L + +++W +KSQ D+++ +KV
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL G G E + LV +GYKV R+EQ
Sbjct: 430 GKFYELYHMDALIGVSELGLVFM---KGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQT 486
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 487 ETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKE 546
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ YG FVD + + ++G +DD C+ L+ P +V++E L KE +
Sbjct: 547 EDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG-----------------S 503
L+ + S L P + F DAS+ + + YF +
Sbjct: 607 TILKSSLSCSLQEGLIPG---SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMT 663
Query: 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL--------------------RNG 543
S S L + ++ SALGG + +L + ++D L R+G
Sbjct: 664 SESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSG 723
Query: 544 DILPYKVYR---DCLRMDGQTLYL---------------DSCVTSSGKRLLRSWICHPLK 585
I R D + ++ ++L D+C T GKRLL+ W+C PL
Sbjct: 724 AIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLC 783
Query: 586 DVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ IN+RLD +E LM + + V + L+KLPDLERLL ++
Sbjct: 784 NHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKI 825
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1
SV=2
Length = 1324
Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 208/354 (58%), Gaps = 25/354 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
LI F E +W +++ A + +DVL S A + G RP+I + +G P
Sbjct: 989 LIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVISGST-------SDGVP 1041
Query: 790 VLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L GL HP G++ G VPN++ +G +LLTGPNMGGKSTLLR CL
Sbjct: 1042 HLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASF---ILLTGPNMGGKSTLLRQVCL 1098
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
AVILAQ+G VP E +S D I R+GA D IM G+STFL E +ETA +L AT++SL
Sbjct: 1099 AVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSL 1158
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V+LDELGRGT+T DG AIA +V +E++ CR F+THYH L+ ++ ++P V+L HMAC
Sbjct: 1159 VVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNPKVSLCHMAC 1218
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027
G +E+ FLYRLT GACP+SYG+ VA +AG+P V++ A + +
Sbjct: 1219 QIGEG----IGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALY 1274
Query: 1028 GESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNSY 1081
G++ + ++ + +++ +K I +S V +SD + D+L C H + N++
Sbjct: 1275 GKNHRKTDHK--LAAM----IKQI--ISSVASDSDYSASKDSL-CELHSMANTF 1319
Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 164/531 (30%), Positives = 262/531 (49%), Gaps = 83/531 (15%)
Query: 202 SSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIR-------DANRRRPDDPL 254
+S+++ +K++ V G+++ + D ++F D K R DA RRRP D
Sbjct: 304 ASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAKRRRPTDEN 363
Query: 255 YDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWK 314
YD RTLY+PP+ +KK++ Q+Q+W K+++MD ++FFK+GKFYEL+E+DA +G KELD +
Sbjct: 364 YDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQ 423
Query: 315 ITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNS-----VIS 369
C G E +EKLV +GY+V +EQ ET +Q + R + V+
Sbjct: 424 YMKGEQPHC---GFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVK 480
Query: 370 RKLVNVVTPSTTVDGTI---GPDAVHLLAIKEGNCGPDNGSVVYGFA--FVDCAALRVWV 424
R++ VVT T DG + PDA +L+A+ EG N + + F VD A ++ +
Sbjct: 481 REVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIIL 540
Query: 425 GTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDF 484
G DD C+AL LL ++ P E+I + L ++ + + + L P +++F
Sbjct: 541 GQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVP---LSEF 597
Query: 485 LDASEVKKLVQL---------------NGYFNGSSSPW-SKALENVMQHD----IGFSAL 524
D+ + V + G G S + K L + D + SAL
Sbjct: 598 WDSEKTIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSAL 657
Query: 525 GGLISHLSRLMLDD-VLRNGDI--LPYKVYRDC-----LRMDGQ---------------- 560
GG I +L + LD+ +LR LPY + + + +D
Sbjct: 658 GGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGY 717
Query: 561 --TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLR 615
TLY L+ C+T+SGKRLL++W+ PL + E I R D V L +N + + L
Sbjct: 718 SGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLS 777
Query: 616 KLPDLERLLGRVKARVQASSCIVLPLIGKKVL------KQQVKVFGSLVKG 660
+LPD+ERL+ R+ + ++AS G KV+ K+QV+ F S ++G
Sbjct: 778 RLPDMERLIARMFSSIEASG-----RNGDKVVLYEDTAKKQVQEFISTLRG 823
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3
Length = 1358
Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 182/297 (61%), Gaps = 15/297 (5%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRP-LILPQSKNPAVRQDNGGPVLK 792
F + W + I+ +DVL A + G M RP ++LP ++ P L+
Sbjct: 1037 FDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPG--------EDTHPFLE 1088
Query: 793 IKGLWHPFALGENGGLP-VPNDILLG---EDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
KG HP G +PNDIL+G E + +L+TGPNMGGKSTL+R L
Sbjct: 1089 FKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLL 1148
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
++AQLGC+VP E C L+ D +FTRLGA+DRIM+GESTF VE +ETAS+L+ AT SLV
Sbjct: 1149 AVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLV 1208
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DELGRGT+TFDG AIA AV ++L E I CR LF+THYH L ++++ V L HMAC
Sbjct: 1209 LVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVCVRLGHMACM 1268
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
++ E+ S+ + + FLY+ GACP+SYG A +A +P++V++ A ++
Sbjct: 1269 VENECEDPSQ--ETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFER 1323
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 215/460 (46%), Gaps = 72/460 (15%)
Query: 234 FEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKV 293
EWL P K RD +RRRPD P ++ TLY+P E L + +++W +KSQ D+++F+KV
Sbjct: 369 LEWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKV 428
Query: 294 GKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQL 353
GKFYELY +DA IG EL + G G E + LV +GYKV R+EQ
Sbjct: 429 GKFYELYHMDAVIGVSELG---LIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQT 485
Query: 354 ETSEQAKAR--------HTNSVISRKLVNVVTPSTTVDGTIGPD-----AVHLLAIKEGN 400
ET E +AR + V+ R++ ++T T + D + +LL++KE
Sbjct: 486 ETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLLSLKEKE 545
Query: 401 CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQ 460
+ VYG FVD + + ++G +DD C+ L+ P ++++E L E +
Sbjct: 546 EETSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETK 605
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG---------------SSS 505
L+ + L P + F DA++ + + GYF G +S
Sbjct: 606 TVLKGSLSSCLQEGLIPG---SQFWDATKTLRTLLEGGYFTGNGDSSTVLPLVLKGMTSE 662
Query: 506 PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRN---------------GDILPYKV 550
S L + ++ SALGG++ +L + ++D L + + P V
Sbjct: 663 SDSVGLTPGEESELALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAV 722
Query: 551 YRDC---LRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDV 587
+ + +D TL LD+C T GKRLL+ W+C PL
Sbjct: 723 FTKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSP 782
Query: 588 EGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
I++RLD VE LM + V VA L+KLPDLERLL ++
Sbjct: 783 SAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKI 822
>sp|Q0AEI7|MUTS_NITEC DNA mismatch repair protein MutS OS=Nitrosomonas eutropha (strain
C91) GN=mutS PE=3 SV=1
Length = 880
Score = 243 bits (619), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 240/872 (27%), Positives = 368/872 (42%), Gaps = 157/872 (18%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---CRQVGISES 331
+QY +K+Q+ D LLF+++G FYEL+ DAE + LD +T G + G+
Sbjct: 21 QQYLRIKTQHTDKLLFYRMGDFYELFYEDAEKAARLLDITLTHRGSSAGEPIKMAGVPFH 80
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI----G 387
D + KLV G + EQ+ +K + R++V ++TP T D + G
Sbjct: 81 AADQYLAKLVKLGESIAICEQIGDPATSKG-----PVERQVVRIITPGTLTDAGLLEERG 135
Query: 388 PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSP 445
V LA+ G V G A+++ AA +RV + S L + L ++ P
Sbjct: 136 NSIVLTLALHHG---------VIGLAWLNLAAGDMRVL------ETSPDNLASELERLHP 180
Query: 446 KEVIY-ENRGL-----CKEAQKALR--KFSAGSAALELTPAMAVTDF--LDASEVKKLVQ 495
E++ E+ L A K L +F A +LT D E++ +
Sbjct: 181 SEILLPESLALPVILNSFTAPKRLPDWQFDYEHAMQQLTRQFGTRDLNAFGCEELRAAIM 240
Query: 496 LNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD--DVLRNGDILPYKVYRD 553
G + QH + ++ HL L ++ + D +
Sbjct: 241 AAGALFEYV--------RLTQHTATDESATQVLGHLQTLRVERPETYLRMDAATRRNLEI 292
Query: 554 CLRMDGQ---TL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVM 608
L + G+ TL LD C TS G RLLR W+ HPL++ + RLD V L+ ++
Sbjct: 293 TLTLRGEEAPTLSSLLDICATSMGSRLLRHWLHHPLRNRITLQQRLDAVSDLIGAKPGIL 352
Query: 609 V--VAQYLRKLPDLERLLGRVKARVQA--------SSCIVLPLIGKKVLKQQVKVFGSLV 658
+ + L+ + D+ER+ R+ R S LP I K + V
Sbjct: 353 YAGIRERLKHIADIERITSRIALRTARPRDLSGLRDSLTALPEIIKLITTSTAIAIHRFV 412
Query: 659 KGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDG-LDK----------FLTQFEA-- 705
+ L L+ +P I DG D LD+ FL Q EA
Sbjct: 413 PAMEPDTTLTQLLVHALQPVPGAVIREGGVIADGYDAELDELRALQKNCGEFLLQLEARE 472
Query: 706 -----------------------------AIDSDF--------------PDYQNHDVTDL 722
I +D+ P+ Q + L
Sbjct: 473 RERTGIPTLKVEYNRVHGFYIEVTRIHGEKIPADYRRRQTLKNAERYSIPELQVFENKTL 532
Query: 723 DAETLSI-----LIELFIEKASQW----SEVIHAISCIDVLRSFAVTASMSSGAMHRPLI 773
A ++ L E +E+ + + E+ +++ +DVL +FA A +
Sbjct: 533 TAREQALAQEKKLYEQLLEQLADFIIPLQEIARSVAELDVLCAFAERADLFG-------- 584
Query: 774 LPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGP 833
P D P L I+ HP + + NDI LG + + + L++TGP
Sbjct: 585 ---YTKPVFTDD---PALDIEAGRHPVVENQIEQY-IANDIQLGAVTREGR-QMLIITGP 636
Query: 834 NMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECT 893
NMGGKST +R T L ++LA G FVP + D IFTR+GA D + G STF+VE T
Sbjct: 637 NMGGKSTYMRQTALIILLAHCGSFVPAGSARIGPIDQIFTRIGAADDLAGGRSTFMVEMT 696
Query: 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953
E AS+L+ AT SLV++DE+GRGTSTFDG A+A+A+ R L+ + LFATHY LT+
Sbjct: 697 EAASILRNATAQSLVLVDEIGRGTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRL 756
Query: 954 FASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVV 1013
P H+ + + +VFL+R+ G+ SYGL VA +AGVP KV+
Sbjct: 757 AEEFPQAINVHVTAV---------EHKRRIVFLHRIEEGSASRSYGLHVAALAGVPDKVI 807
Query: 1014 EAASHAALAMKKSIGESFKSSEQRSEFSSLHE 1045
A +++ E+ S Q++ F ++ E
Sbjct: 808 RNAGKILAQLEQ---EALSKSPQQTLFETIEE 836
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6
PE=3 SV=1
Length = 1260
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 180/304 (59%), Gaps = 18/304 (5%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPA 781
L E L ++ F + + I +S +D L S + SS M RPL
Sbjct: 928 LSKEVLKKILSNFAIYFNHFQIAITKLSQLDCLLSLYKVSFQSSIQMCRPLF-------- 979
Query: 782 VRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTL 841
V D G + +K + HP ++G +PNDI L +++ P ++LTGPNMGGKSTL
Sbjct: 980 VSSDQRG-FIDVKDMRHPCIYSKSGDDFIPNDISLNTENNP--PSLMVLTGPNMGGKSTL 1036
Query: 842 LRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901
LR +C+ VI+AQ+GC+V C +S+ D IFTRLGA D I+ G+STF+VE ET++VL+
Sbjct: 1037 LRQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKY 1096
Query: 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961
AT+ SLVILDELGRGTSTFDGY+IAY+V L ++ +FATHY L E ++
Sbjct: 1097 ATKRSLVILDELGRGTSTFDGYSIAYSVLNYLATKVQSMCIFATHYQSLAYEPTVRDLIS 1156
Query: 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAAL 1021
+M C + ++++FLY+L SG CP SYGL VA MAG+P++++ A +
Sbjct: 1157 TAYMTCHVDEEA-------KKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKST 1209
Query: 1022 AMKK 1025
M+K
Sbjct: 1210 QMEK 1213
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 218/434 (50%), Gaps = 55/434 (12%)
Query: 242 IRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYE 301
I+DAN D P YDKRTL+IP L K S ++Q+W++KS+ D ++FFK GKFYELYE
Sbjct: 332 IKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKKGKFYELYE 391
Query: 302 LDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS----- 356
DA+IGH++L K+T R VG+ E + KL+ G+KV +++Q+ETS
Sbjct: 392 SDADIGHQQLHLKLT--DRVNMRMVGVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAK 449
Query: 357 ---EQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD--AVHLLAIKEGNCGPDNGSVVYG 411
E+ +S+I R+L +++T T +D + D + +L+AIKE YG
Sbjct: 450 RQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKENEYDKQ-----YG 504
Query: 412 FAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSA 471
FVD + ++ TI DD + LL+Q+ PKE++YE +G ++ K +
Sbjct: 505 VCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYE-KGATSPKTISIMKRVLSTV 563
Query: 472 ALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHL 531
+ +++ + ++++ QL G +P + L + + ALGG IS+L
Sbjct: 564 KPVMNARLSLEYWDPTDTMERITQL----CGGKTP--ETLCQMKNEEYLMGALGGCISYL 617
Query: 532 SRLMLDDVLRNGDILPYKVYR-------DCLRMDGQTL--------------------YL 564
+D + N + + R + + +DGQ L +
Sbjct: 618 ----MDIKIGNSVVEQARFKRFNPLDIGNSMILDGQCLVNLEIFNNSTDGSTEGTLFKLM 673
Query: 565 DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLL 624
D C T+ GKR+ R WIC PL + I +R +E+L + E + V L KLPDLER++
Sbjct: 674 DRCTTAFGKRMFRQWICRPLANKNAIVDRQKAIEFLRDSPETLQKVTAILNKLPDLERMI 733
Query: 625 GRVKARVQASSCIV 638
R++A+ S ++
Sbjct: 734 ARIRAQTSKISDLI 747
>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=msh6 PE=1 SV=1
Length = 1254
Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 252/535 (47%), Gaps = 56/535 (10%)
Query: 144 YSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMHRVVPRLKR--------ILEDNLN 195
Y E D++ + A+ M+EDV G + P K+ L ++
Sbjct: 233 YVEPDHISEASSEASLPIDEVESMDEDVDGYSDHSVSVAAPIPKKESRKESSNSLYESYR 292
Query: 196 IGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEE---------ADTTSKFEWLDPSKIRDAN 246
+G + S S + + GV N EE+ + ++EWL +RDA+
Sbjct: 293 LGSQIASPSPSVSGSASPTKSNKNGVLNREEKRRQRMEAFKKENNERYEWL--LDVRDAD 350
Query: 247 RRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEI 306
+ R DP YD RTLYIPP A +KQ+W +K MD ++FF+ GKFYELYE DA I
Sbjct: 351 QNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAI 410
Query: 307 GHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS------EQAK 360
GH+ K+T + VGI E+ D + +A+GY++ R++QLET+ ++ +
Sbjct: 411 GHQVFSLKLT--DRVNMKMVGIPEASFDYWASQFIAKGYRIARVDQLETALGKEIKDRQR 468
Query: 361 ARHTNSVISRKLVNVVTPSTTVD-GTIGPD-AVHLLAIKEGNCGPDNGSVVYGFAFVDCA 418
+ V+ R L V+T T VD + D + + +AIKE + DN +G F+D +
Sbjct: 469 TQKEEKVVQRGLTQVLTSGTLVDEAMLTSDLSTYCMAIKE-SLQSDNEEPSFGICFIDTS 527
Query: 419 ALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPA 478
+ DD L LL QV PKE+I E + +++ +A++ + S+
Sbjct: 528 TGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAIKYCVSSSSIWNFI-- 585
Query: 479 MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVM-QHDIGFSALGGLISHLSRLMLD 537
T+F D V++ + YF K L++ + + + SA G L +L +L LD
Sbjct: 586 KPYTEFWDNERVEREIIAGDYFKNGLEGAPKILKSYLSEKPLAISAFGALFWYLRQLKLD 645
Query: 538 -DVLRNGDILPYKVYRD--CLRMDGQTL--------------------YLDSCVTSSGKR 574
D+ G+ Y + L M+GQTL L CVT GKR
Sbjct: 646 KDMCSMGNFDEYDASQQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKR 705
Query: 575 LLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA 629
L +W+CHPL+ IN RLDVVE + N + + +L KLPDLERL+ RV A
Sbjct: 706 LFHTWLCHPLRSGTAINARLDVVELIADNPVIRDTIWGFLHKLPDLERLISRVHA 760
Score = 229 bits (584), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 169/293 (57%), Gaps = 21/293 (7%)
Query: 734 FIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKI 793
F QW +I + ID S S ++ A+ P P+ + Q +G L
Sbjct: 940 FDSNYEQWLALIKYTASIDCFFSL----SQAAAALGEPYCRPE----IIEQKDGH--LYF 989
Query: 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ 853
+ L HP VPND++LG +S P ++LTGPNM GKSTLLR C+AVI+AQ
Sbjct: 990 EELRHPCINASAASTFVPNDVVLGGES----PNMIVLTGPNMAGKSTLLRQVCIAVIMAQ 1045
Query: 854 LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDEL 913
LGC+VP + ++ +I+TRLGA D IM+ STF+VE +ET +L + SLVILDEL
Sbjct: 1046 LGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDEL 1105
Query: 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNS 973
GRGTST+DG+AIAYAV LV I C F+THY L +F H V L MA A
Sbjct: 1106 GRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAVDEKI 1165
Query: 974 ENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+ + FLY+L G CP+SYG+ VA MAG+P+KV++AA A ++++
Sbjct: 1166 -------RRVTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELEQA 1211
>sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster
GN=Msh6 PE=1 SV=2
Length = 1190
Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 177/303 (58%), Gaps = 23/303 (7%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L E F QW + I ++ +DVL S A A +++ P + D P
Sbjct: 872 LFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQ-------MVICV---PELVSDADQP 921
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
++++ +HP A N +PN + LG S+ L LLTGPNMGGKSTL+R L V
Sbjct: 922 FIQLEEGYHPCA---NASTYIPNGLELGTASEAPLS---LLTGPNMGGKSTLMREVGLLV 975
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
I+AQ+G +P C LSL D IFTRLGA D I+ G STFLVE ET+ +L+ AT SLV+
Sbjct: 976 IMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVL 1035
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDELGRGT+T+DG AIA +V + + CR LF+THYH L F + +TL HMAC
Sbjct: 1036 LDELGRGTATYDGTAIAASVV-NFLANLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMV 1094
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-----AALAMK 1024
+ N +N + + FLY+ T+GACP+SYG A +AG+PQ +++ A A+A++
Sbjct: 1095 E-NEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQ 1153
Query: 1025 KSI 1027
+ I
Sbjct: 1154 RKI 1156
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 160/549 (29%), Positives = 233/549 (42%), Gaps = 89/549 (16%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
K E+L P KI+D RRPD P YDK TL++P + L +S +Q+W +KS D +LFFK
Sbjct: 224 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 283
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
VGKFYELY +DA++G EL + G+ G E D LV RG+KV R+EQ
Sbjct: 284 VGKFYELYHMDADVGVNELGFTYMR---GEFAHSGFPEISFDKMSTILVDRGFKVARVEQ 340
Query: 353 LETSE-------QAKARHTNSVISRKLVNVVTPSTTVDGT---IGPD--AVHLLAI---K 397
ET + + KA + V++R++ + T V G+ IGP+ ++LAI
Sbjct: 341 TETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEKD 400
Query: 398 EGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCK 457
EG C YG F+D + +G DD +C+ L L+ P + E L +
Sbjct: 401 EGTCS------RYGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSALSQ 454
Query: 458 EAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWS---KALENV 514
Q+ +R G E P +K L + GS W + +++
Sbjct: 455 RTQQIVRTV-LGGILKEPVPGNGKHACSAEKTLKLLAERYYAGPGSDDNWPLVLRTMQSD 513
Query: 515 MQH---------DIGFSALGGLISHLSRLMLDDVLRNGDILP---YKVY----------- 551
M H + ALG I + + L+ +LP Y++Y
Sbjct: 514 MDHLGLTPNDNYKLALKALGQCIFFIHKCKLE-----PKVLPMARYQLYVPPDQLADAKP 568
Query: 552 -------RDCLRMDGQTL--------------YLDSCVTSSGKRLLRSWICHPLKDVEGI 590
R + +D TL LD C T GKRLL W+C P DV I
Sbjct: 569 AVASTLRRSHMVLDATTLSNLRIIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVI 628
Query: 591 NNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLG--------RVKARVQASSCIVLPLI 642
R D + L++ + V L +PD ER L ++K S +L
Sbjct: 629 KERQDAIGELIRMPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQMDHPDSRAIL-FE 687
Query: 643 GKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGS-DGLDKFLT 701
K KQ+++ F +++KG L + H+ + L RI + P GS L K L
Sbjct: 688 EKLYNKQKLQGFMAVLKGFNDLTKLPTMFHQCKTTL--LKRITQLPESGGSFPDLSKELQ 745
Query: 702 QFEAAIDSD 710
F A D D
Sbjct: 746 YFATAFDHD 754
>sp|Q1ZXH0|MSH3_DICDI DNA mismatch repair protein Msh3 OS=Dictyostelium discoideum GN=msh3
PE=3 SV=1
Length = 1428
Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 191/336 (56%), Gaps = 31/336 (9%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
S +S ++ IS +D L S A +S+ RP + + K+ ++ +NG H
Sbjct: 1098 SLFSNFVNKISNLDCLFSLAKVSSLE--GYIRPQFVKEKKDGGIQIENG---------RH 1146
Query: 799 PFA---LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855
P L + G VPN I L E + C +++++TGPNMGGKS+LLR T L VI+AQ+G
Sbjct: 1147 PVVEAILSGSDGSYVPNTIELRESA--C--KSMIITGPNMGGKSSLLRQTALIVIMAQVG 1202
Query: 856 CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915
CFVP C LS+ D I+TR+GA D I TG+STF +E ET+ +L+ +TQ++LVILDELGR
Sbjct: 1203 CFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEETSDILKNSTQNTLVILDELGR 1262
Query: 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMACAFKSNSE 974
GTST DG AIAY+ + +VE + C LF THY L + +P V HM + +
Sbjct: 1263 GTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLELQYPTQVGNFHMGYLEEKQDQ 1322
Query: 975 NYSKG-DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
K +++FLY+L GA SYGL +A +AG+P +V+ A + MK+SI
Sbjct: 1323 QLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVIADALKKSNEMKESITRRANL 1382
Query: 1034 SEQR------SEFSSLHEEWLKTIVNVSRVDCNSDD 1063
S+ + +E S+ + W N +R NS+D
Sbjct: 1383 SDGKDQQQIENEIKSIIKNW-----NSNRTTLNSND 1413
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-----KNSEVVMVVAQYLRKLP 618
++ T SG R+ +WIC PL +E I R D VE L+ + +V +++ + +P
Sbjct: 814 MNRTSTFSGSRMFINWICKPLNQLELIKERQDAVEELVNGIKTNSPPIVSIISLFKSHIP 873
Query: 619 DLERLLGRVKARVQAS 634
DL+R L R+ +VQ +
Sbjct: 874 DLQRNLSRIYYKVQCT 889
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 274 QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELD-WKITLSGVGKCRQVGISESG 332
++QY +K + D +L + G Y+ + DAE+ +K L+ + C I
Sbjct: 457 EQQYIAIKKENPDTVLMVECGYKYKFFGEDAEVANKVLNIYSYVAKNFLNC---SIPTQR 513
Query: 333 IDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVVTPSTTVDGTI----- 386
+ + +LV GYKVG +EQ ET+ +A + + RKL V T ST +D I
Sbjct: 514 LFFHLRRLVMAGYKVGIVEQTETAALKAISSSKSQPFERKLTRVYTSSTFIDDDIDDQLT 573
Query: 387 GPDAVHLLAIKEGNCGPDNGSVV---------------------YGFAFVDCAALRVWVG 425
L++ E N V+ F V +
Sbjct: 574 SSSPQFLVSFYESTPKNKNDDVIKKQRDNEEEGIDSSNESSTSTISFVAVSVKTGEIIYD 633
Query: 426 TINDDASCAALGALLMQVSPKEVI 449
T D+ + L +L + P E++
Sbjct: 634 TFKDNVMRSQLETILTHIKPSEIL 657
>sp|Q67NK1|MUTS_SYMTH DNA mismatch repair protein MutS OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=mutS PE=3 SV=1
Length = 875
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 179/313 (57%), Gaps = 30/313 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V DL+ E + + + ++ A++ +D L SFA AS+ RPL+
Sbjct: 529 VMDLEYELFVEIRQRVAAEVTRIQRSARAVAELDALASFAEVASLYGYC--RPLV----- 581
Query: 779 NPAVRQDNGGPVLKIKGLWHPF--ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
+G VL++KG HP + E G VPND+L+ D R LL+TGPNMG
Sbjct: 582 -------DGSTVLELKGSRHPVLERVMEEGAF-VPNDLLV----DTGENRVLLITGPNMG 629
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKST++R LAVILAQ G FVP E + L D +FTR+GA+D + TG STF+VE TE A
Sbjct: 630 GKSTVMRQAALAVILAQAGSFVPAESAHIGLVDRVFTRVGASDDLATGRSTFMVEMTEVA 689
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
++L AT+ SLV+LDE+GRGT+TFDG +IA+A+ + + I CR LFATHYH L +
Sbjct: 690 NILHSATERSLVVLDEVGRGTATFDGLSIAWAITEHIHQAIGCRTLFATHYHELCE---- 745
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
L+ + K+ S + ++++FL +L G SYG+QV +AG+P VVE A
Sbjct: 746 -----LEGILPGVKNYSVAVMEKGEDIIFLRKLVRGGADRSYGIQVGRLAGLPASVVERA 800
Query: 1017 SHAALAMKKSIGE 1029
+++ GE
Sbjct: 801 REILATLEEQEGE 813
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 165/373 (44%), Gaps = 41/373 (10%)
Query: 276 QYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG------VGKCRQVGIS 329
QY +K QY D +LF+++G FYE + DAE+ +EL+ + L+G +G+ GI
Sbjct: 12 QYLQIKEQYPDCILFYRLGDFYETFMDDAELVARELE--LVLTGRDAGKDMGRVPMAGIP 69
Query: 330 ESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD 389
+ + +L+ +GYKV +QLE ++AK ++ R + VVTP T V+ + P+
Sbjct: 70 YHAAEAYIARLIEKGYKVAICDQLEDPKKAKG-----LVKRDVTRVVTPGTLVEPRLLPE 124
Query: 390 AVH--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKE 447
+ L AI G +G A VD + +N S L + ++ P+E
Sbjct: 125 KANNFLAAIAWSRTG-------FGLAVVDLSTGEFAAAQMNGADSLRLLLEEIGRLEPRE 177
Query: 448 VIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS--- 504
VI E GL E ++G A F A+ +KL + G N S
Sbjct: 178 VILEP-GLAAEPSVTGPLKASGIA----VSVFEGRHFNHANAYRKLTEHFGTANLSGFGC 232
Query: 505 ----------SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDC 554
LE + + +G + G + + M+ D ++ + RD
Sbjct: 233 EDLELATSAAGAALAYLEEMHKASLGHVS-GLAVYYPGDYMVLDPATRRNLELTRSLRDG 291
Query: 555 LRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYL 614
R +D VT+ G RLL+SW+ PL D+ I+ R + V L+ + + L
Sbjct: 292 GRRGTLLWVMDRTVTAMGARLLKSWLERPLLDLRQIHARHEAVGELVHRPVLRADLRALL 351
Query: 615 RKLPDLERLLGRV 627
+++ DLERL GRV
Sbjct: 352 QEVHDLERLAGRV 364
>sp|Q03834|MSH6_YEAST DNA mismatch repair protein MSH6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSH6 PE=1 SV=1
Length = 1242
Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 119/282 (42%), Positives = 155/282 (54%), Gaps = 15/282 (5%)
Query: 741 WSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHP- 799
W I AIS ID L + T+ RP I+ + + Q NG LK K L HP
Sbjct: 895 WMPTIQAISNIDCLLAITRTSEYLGAPSCRPTIVDEVDSKTNTQLNG--FLKFKSLRHPC 952
Query: 800 FALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV 858
F LG +PNDI LG++ PR LLTG N GKST+LR C+AVI+AQ+GC+V
Sbjct: 953 FNLGATTAKDFIPNDIELGKEQ----PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYV 1008
Query: 859 PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTS 918
PCE VL+ D I TRLGA D IM G+STF VE ET +L AT SL+++DELGRG S
Sbjct: 1009 PCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLLVVDELGRGGS 1068
Query: 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSK 978
+ DG+AIA +V + I FATHY L F HP V M+ + N
Sbjct: 1069 SSDGFAIAESVLHHVATHIQSLGFFATHYGTLASSFKHHPQVRPLKMSILVDEATRN--- 1125
Query: 979 GDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAA 1020
+ FLY++ G S+G+ VA M G+ +++++ A AA
Sbjct: 1126 ----VTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQIAA 1163
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 215/440 (48%), Gaps = 46/440 (10%)
Query: 233 KFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFK 292
+++WL RDA RR DP YD RTLYIP A K + +KQYW +KS+ D ++FFK
Sbjct: 276 RYQWLVDE--RDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSKMWDCIVFFK 333
Query: 293 VGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQ 352
GKF+ELYE DA + + D KI G + GI E + + + GYKV +++Q
Sbjct: 334 KGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQMGYKVAKVDQ 393
Query: 353 LETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI--GPDAVHLLAIKE--GN----CGP 403
E+ + R + ++ R+L ++T T DG + A LAI+E GN
Sbjct: 394 RESMLAKEMREGSKGIVKRELQCILTSGTLTDGDMLHSDLATFCLAIREEPGNFYNETQL 453
Query: 404 DNGSVV-------YGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLC 456
D+ ++V +G AF+D A + + DD+ C L L+ QV P EV+ E L
Sbjct: 454 DSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQVRPMEVVMERNNLS 513
Query: 457 KEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQ 516
A K + KF++ A+ A +F D + + + YF+ + W + L++
Sbjct: 514 TLANKIV-KFNSAPNAI-FNEVKAGEEFYDCDKTYAEIISSEYFS-TEEDWPEVLKSYYD 570
Query: 517 --HDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRD--CLRMDGQTL--------- 562
+GFSA GGL+ +L L LD +++ +I Y + + +DG TL
Sbjct: 571 TGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEYDFVKSQHSMVLDGITLQNLEIFSNS 630
Query: 563 -----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ +T GKR+++ W+ HPL I +RLD V+ L+++ + +
Sbjct: 631 FDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLE 690
Query: 612 QYLRKLPDLERLLGRVKARV 631
KLPDLER+L R+ +R
Sbjct: 691 ITFSKLPDLERMLARIHSRT 710
>sp|Q82U08|MUTS_NITEU DNA mismatch repair protein MutS OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=mutS PE=3 SV=1
Length = 873
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 167/557 (29%), Positives = 256/557 (45%), Gaps = 103/557 (18%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLPDLE 621
LD+C T G RLLR W+ HPL++ + RLD V L+ + + Q + + D+E
Sbjct: 301 LDTCSTGMGSRLLRHWLHHPLRNRITLQQRLDTVSDLIGAQPETLYAGIRQQFKHIADIE 360
Query: 622 RLLGRVKARVQA--------SSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHK 673
R+ R+ R S + LP I + + + ++ L L+ +
Sbjct: 361 RITSRIALRTARPRDLSGLRDSLMRLPGIIELIATSAAAAVHRFIPPMQPDPLLTQLLVR 420
Query: 674 EGHIIPSLSRIFKPPIFDGSD-------GL----DKFLTQFEAA---------IDSDF-- 711
+P I DG D GL D+FL Q EA + ++
Sbjct: 421 ALQPVPGAVIREGGVIADGFDAELDELRGLQGNCDEFLLQLEARERERTGIPNLKVEYNR 480
Query: 712 -----------------PDY---------QNHDVTDLDA---ETLS----------ILIE 732
PDY + + + +L A +TLS +L E
Sbjct: 481 VHGFYIEVTRAQGEKIPPDYRRRQTLKNAERYIIPELQAFEHKTLSAREQALAREKMLYE 540
Query: 733 LFIEKASQW----SEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGG 788
+E+ + + E+ +++ +DVL +FA A++S P D
Sbjct: 541 RLLEQLADFIIPLQEIARSVAELDVLCAFAERAALSG-----------YTKPVFTDD--- 586
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
PVL I+ HP + + ND+ LG + + + L++TGPNMGGKST +R T L
Sbjct: 587 PVLIIEAGRHPVVENQVEHY-IANDVQLGAITRENR-QMLVITGPNMGGKSTYMRQTALT 644
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
V+LA G FVP ++ + D IFTR+GA D + G STF+VE TE A +L+ AT SLV
Sbjct: 645 VLLAHCGSFVPAQIARIGPIDQIFTRIGAADDLAGGRSTFMVEMTEAAGILRNATAQSLV 704
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DE+GRGTSTFDG A+A+A+ R L+ + LFATHY LT+ P H+
Sbjct: 705 LVDEIGRGTSTFDGLALAFAIARHLLTQNQSYTLFATHYFELTRLAEEFPQAVNIHVTAV 764
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
+ + +VFL+R+ G SYGL VA +AGVP +V+ +AA + +
Sbjct: 765 ---------EHKRRIVFLHRIEEGPASRSYGLHVAALAGVPDRVIR---NAAKILARLEQ 812
Query: 1029 ESFKSSEQRSEFSSLHE 1045
E+ S Q++ F ++ E
Sbjct: 813 ETLSRSPQQTLFETVEE 829
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGK---CRQVGISES 331
+QY +K+Q+ D LLF+++G FYEL+ DAE K LD +T G + G+
Sbjct: 14 QQYLRIKAQHTDKLLFYRMGDFYELFYEDAEKAAKLLDITLTQRGSSAGEPIKMAGVPFH 73
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPD-- 389
D + +LV G + EQ T + A ++ + R+++ ++TP T D + +
Sbjct: 74 AADQYLARLVRLGESIAICEQ--TGDPATSK---GPVERQVIRILTPGTLTDAGLLEERS 128
Query: 390 --AVHLLAIKEGNCG 402
V LA+ G+ G
Sbjct: 129 NSIVLALALHRGSIG 143
>sp|B2S2S5|MUTS_TREPS DNA mismatch repair protein MutS OS=Treponema pallidum subsp.
pallidum (strain SS14) GN=mutS PE=3 SV=1
Length = 900
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 167/288 (57%), Gaps = 26/288 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA-LGENG 806
++ +DVL+SFA A++ G P +D L+I G HP L
Sbjct: 555 VAQLDVLQSFA-HAALQHGW----------SQPVFIKDGA---LRITGGRHPVVELHLPS 600
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
G VPND+ L LPR L+TGPNM GKST LR T L ++AQ+G FVP E L+
Sbjct: 601 GEFVPNDLTLSSSEHAVLPRFALITGPNMAGKSTFLRQTALICLIAQVGSFVPAEKAELT 660
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IF R+GA D + GESTFLVE +ETA +L+ AT+DSLVI+DE+GRGT+T DG +IA
Sbjct: 661 PVDRIFCRVGAADNLARGESTFLVEMSETAHILRAATRDSLVIMDEVGRGTATEDGLSIA 720
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
AV L+ + + LFATHYH L++ +HP L+H+ + + D +VFL
Sbjct: 721 QAVSEYLLHHVRAKTLFATHYHELSR--LAHPQ--LEHLKL-------DVLETDNTIVFL 769
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
++T G+C SYG+ VA +AG+P+ V+ A +++ G + ++S
Sbjct: 770 KKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQRAGSAPRAS 817
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 155/380 (40%), Gaps = 58/380 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +++Q+ D +LFF++G FYE+++ DA H +TL+ G+
Sbjct: 12 RQYHAIRAQHPDAVLFFRLGDFYEMFDSDAL--HVSTLLGLTLTKRNGTPMCGVPVHTAR 69
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G KV EQ+ + + RK++ +++P T V D +
Sbjct: 70 THIARLLKHGKKVALCEQVSHPVPGE------LTQRKVIEIISPGTAVEDDFLSQGFSQY 123
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
LA C D F++++ + ++ + + AL +V P EV+
Sbjct: 124 LATV---CASD---ATVAFSYLEVSTGAFFITSFPRAEAADALQKEFGRVQPSEVLL--- 174
Query: 454 GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA----SEVKKLVQLNGYFNGSSSPWSK 509
+ LR +A L L P + T DA K +L+ F ++
Sbjct: 175 -----SASVLRSLPELAAILSLYPRLVRTTGADALFNPEHTKN--RLHHCFR------TR 221
Query: 510 ALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD--------- 558
L+ ++ H +A G LI++L + I Y ++ D + +D
Sbjct: 222 NLDCLTLLPHSPDLAAAGALIAYLEETTRHPLSHVSAITRYHIH-DFVEIDDATRKNLEI 280
Query: 559 ---------GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+L+ L+ T+ G RLLR W+ HPL+ E I RL V + ++
Sbjct: 281 LQNLHDSTHAHSLFETLNYTHTAMGTRLLRYWLHHPLRSQEEIQKRLSAVVFFHHRPHIL 340
Query: 608 MVVAQYLRKLPDLERLLGRV 627
+ L + D+ERL+ RV
Sbjct: 341 KTLRATLSCVRDVERLVARV 360
>sp|O83348|MUTS_TREPA DNA mismatch repair protein MutS OS=Treponema pallidum (strain
Nichols) GN=mutS PE=3 SV=1
Length = 900
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 167/288 (57%), Gaps = 26/288 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA-LGENG 806
++ +DVL+SFA A++ G P +D L+I G HP L
Sbjct: 555 VAQLDVLQSFA-HAALQHGW----------SQPVFIKDGA---LRITGGRHPVVELHLPS 600
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
G VPND+ L LPR L+TGPNM GKST LR T L ++AQ+G FVP E L+
Sbjct: 601 GEFVPNDLTLSSSEHAVLPRFALITGPNMAGKSTFLRQTALICLIAQVGSFVPAEKAELT 660
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
D IF R+GA D + GESTFLVE +ETA +L+ AT+DSLVI+DE+GRGT+T DG +IA
Sbjct: 661 PVDRIFCRVGAADNLARGESTFLVEMSETAHILRAATRDSLVIMDEVGRGTATEDGLSIA 720
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
AV L+ + + LFATHYH L++ +HP L+H+ + + D +VFL
Sbjct: 721 QAVSEYLLHHVRAKTLFATHYHELSR--LAHPQ--LEHLKL-------DVLETDNTIVFL 769
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS 1034
++T G+C SYG+ VA +AG+P+ V+ A +++ G + ++S
Sbjct: 770 KKVTPGSCGSSYGIYVARLAGLPESVLARACELLKQLQQRAGSAPRAS 817
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 155/380 (40%), Gaps = 58/380 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY +++Q+ D +LFF++G FYE+++ DA H +TL+ G+
Sbjct: 12 RQYHAIRAQHPDAVLFFRLGDFYEMFDSDAL--HVSTLLGLTLTKRNGTPMCGVPVHTAR 69
Query: 335 DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTIGPDAVHL 393
+ +L+ G KV EQ+ + + RK++ +++P T V D +
Sbjct: 70 THIARLLKHGKKVALCEQVSHPVPGE------LTQRKVIEIISPGTAVEDDFLSQGFSQY 123
Query: 394 LAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENR 453
LA C D F++++ + ++ + + AL +V P EV+
Sbjct: 124 LATV---CASD---ATVAFSYLEVSTGAFFITSFPRAEAADALQKEFGRVQPSEVLL--- 174
Query: 454 GLCKEAQKALRKFSAGSAALELTPAMAVTDFLDA----SEVKKLVQLNGYFNGSSSPWSK 509
+ LR +A L L P + T DA K +L+ F ++
Sbjct: 175 -----SASVLRSLPELAAILSLYPRLVRTTGADALFNPEHTKN--RLHHCFR------TR 221
Query: 510 ALE--NVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD--------- 558
L+ ++ H +A G LI++L + I Y ++ D + +D
Sbjct: 222 NLDCLTLLPHSPDLAAAGALIAYLEETTRHPLSHVSAITRYHIH-DFVEIDDATRKNLEI 280
Query: 559 ---------GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVV 607
+L+ L+ T+ G RLLR W+ HPL+ E I RL V + ++
Sbjct: 281 LQNLHDSTHAHSLFETLNYTHTAMGTRLLRYWLHHPLRSQEEIQKRLSAVVFFHHRPHIL 340
Query: 608 MVVAQYLRKLPDLERLLGRV 627
+ L + D+ERL+ RV
Sbjct: 341 KTLRATLSCVRDVERLVARV 360
>sp|A1WXK9|MUTS_HALHL DNA mismatch repair protein MutS OS=Halorhodospira halophila (strain
DSM 244 / SL1) GN=mutS PE=3 SV=1
Length = 868
Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/228 (46%), Positives = 140/228 (61%), Gaps = 14/228 (6%)
Query: 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848
P ++I+G HP VPND+ L D R LL+TGPNMGGKST +R T L
Sbjct: 583 PGVRIEGGRHPVVEQALDAPFVPNDVRL-----DNRRRMLLITGPNMGGKSTYMRQTALI 637
Query: 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLV 908
+LA G FVP + VL D IFTR+GA D + +G STF+VE TETA++L AT +SLV
Sbjct: 638 ALLAYAGAFVPAQRAVLGPIDRIFTRIGAADDLASGRSTFMVEMTETANILHNATAESLV 697
Query: 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968
++DE+GRGTSTFDG A+A+A +L RI LFATHY +T HP V H+ A
Sbjct: 698 LMDEIGRGTSTFDGLALAWATAERLATRIRAFTLFATHYFEMTALEQIHPGVVNVHLEAA 757
Query: 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ + +VFL+ + G +SYGLQVA +AGVPQ+V++AA
Sbjct: 758 ---------EHGERIVFLHAVRDGPANQSYGLQVAALAGVPQEVLKAA 796
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 158/378 (41%), Gaps = 61/378 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+Q+ +K++Y + LLF+++G FYEL+ DAE K LD ITL+ G+ I +G+
Sbjct: 21 RQFLRIKAEYPETLLFYRMGDFYELFYEDAERAAKLLD--ITLTTRGESAGAPIPMAGVP 78
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQ-AKARHTNSVISRKLVNVVTPST-TVDGTIGPDAV 391
+VE +AR ++G E + EQ T + R++V VVTP T T D + +
Sbjct: 79 VQSVESYLARLVRLG--ESVAICEQIGDPNTTKGPVERQVVRVVTPGTLTEDALLEERSA 136
Query: 392 HLL-AIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIY 450
+LL A+ G G +G A ++ ++ R V D AL A L ++ P E+I
Sbjct: 137 NLLTAVAPGPKG------RFGVASLELSSGRFSVLEAPDQ---EALTAELERLRPAELIL 187
Query: 451 EN-------RGLCKEAQKALRKFSAGSAALELTPAMAVTDF--LDASEVKKLVQLNG--- 498
+ G C ++ F SA L + D A E+ V G
Sbjct: 188 PDDDQTPAPEGGCVAQRRPSWHFEYDSARRLLLRQLGTHDLSGFGAEELHAPVTAAGALL 247
Query: 499 -YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSR---LMLDDVLRNGDILPYKVYRDC 554
Y N + AL +V G ++ SR + +D R + +
Sbjct: 248 QYLNETQ---RAALPHV-----------GALTVESRDEAITIDAASRRNLEIEHN----- 288
Query: 555 LRMDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
+ G T + +D+ VT+ G RLLR W+ PL+ E I
Sbjct: 289 --LSGGTEHTLASVIDTSVTAMGGRLLRRWLQRPLRRRETIAA--RHAAVAALADGAFAD 344
Query: 610 VAQYLRKLPDLERLLGRV 627
V L D+ER+L RV
Sbjct: 345 VRSTLEGCADVERILARV 362
>sp|B2G6E5|MUTS_LACRJ DNA mismatch repair protein MutS OS=Lactobacillus reuteri (strain JCM
1112) GN=mutS PE=3 SV=1
Length = 881
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 164/279 (58%), Gaps = 29/279 (10%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
++ ++ ++ +DVL+SFAV S H + P+ N G VLKIK H
Sbjct: 530 TRLQKLAQQLAELDVLQSFAVV----SEDYH--FVRPEM--------NTGHVLKIKDGRH 575
Query: 799 PFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
P G VPND+L+GED+D LL+TGPNM GKST +R L ++AQ+GCF
Sbjct: 576 PVVEKFMGHQEYVPNDVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQIGCF 630
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L + D +FTR+GA D +++GESTF+VE E + L AT SL++ DE+GRGT
Sbjct: 631 VPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEIGRGT 690
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
+T+DG A+A A+ + + + + LF+THYH LT L++ K+ +
Sbjct: 691 ATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELT---------ALENSLARLKNVHVGAT 741
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ D ELVFL+++++G +SYG+ VA +AG+P +++ A
Sbjct: 742 EKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSSLLKRA 780
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 166/378 (43%), Gaps = 54/378 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ +++ ++ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G D +L AI G G V+ A+ D + + ++N+ L+
Sbjct: 118 NGEQARDNNYLAAIS-GQNG------VFSIAYTDLSTGELKTTSLNNANDAV---NELVN 167
Query: 443 VSPKEVI------------YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
+ KEV+ ++ R + + Q + K + S +T LD
Sbjct: 168 LQSKEVVVDGELPVEITTQFKQRNILQSHQPTVLKNAEIS---------YLTQDLDDQAQ 218
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDVLRNGDILPYK 549
+ +V L + ++ S A MQ I + + I H S+ L +++RN
Sbjct: 219 QHVVALLVSYLLTTQKRSLAH---MQKAIAYQPSSFMKIDHYSKTNL-ELMRN------- 267
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R R LD T+ G RLL+ WI PL + I+ R D V+ L+ +
Sbjct: 268 -MRSGKRQGTLAWLLDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSN 326
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL GRV
Sbjct: 327 LQQELIKVYDLERLAGRV 344
>sp|A5VIW9|MUTS_LACRD DNA mismatch repair protein MutS OS=Lactobacillus reuteri (strain DSM
20016) GN=mutS PE=3 SV=1
Length = 881
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 164/279 (58%), Gaps = 29/279 (10%)
Query: 739 SQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWH 798
++ ++ ++ +DVL+SFAV S H + P+ N G VLKIK H
Sbjct: 530 TRLQKLAQQLAELDVLQSFAVV----SEDYH--FVRPEM--------NTGHVLKIKDGRH 575
Query: 799 PFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF 857
P G VPND+L+GED+D LL+TGPNM GKST +R L ++AQ+GCF
Sbjct: 576 PVVEKFMGHQEYVPNDVLMGEDTD-----ILLITGPNMSGKSTYMRQLALIAVMAQIGCF 630
Query: 858 VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917
VP + L + D +FTR+GA D +++GESTF+VE E + L AT SL++ DE+GRGT
Sbjct: 631 VPAKSAELPIFDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEIGRGT 690
Query: 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS 977
+T+DG A+A A+ + + + + LF+THYH LT L++ K+ +
Sbjct: 691 ATYDGMALAQAIIEYVHQHVRAKTLFSTHYHELT---------ALENSLARLKNVHVGAT 741
Query: 978 KGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ D ELVFL+++++G +SYG+ VA +AG+P +++ A
Sbjct: 742 EKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSSLLKRA 780
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 166/378 (43%), Gaps = 54/378 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCR 324
KK + +QY VK QY D LF+++G FYEL+ DA G + L+ +T S
Sbjct: 3 KKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIP 62
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD- 383
G+ +++ ++ L+ +GYKV EQ+E ++AK ++ R + ++TP T +D
Sbjct: 63 MCGVPHRAVNNYIDILIDKGYKVAICEQMEDPKKAKG-----MVKRAVTRLITPGTQMDL 117
Query: 384 -GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
G D +L AI G G V+ A+ D + + ++N+ L+
Sbjct: 118 NGEQARDNNYLAAIS-GQNG------VFSIAYTDLSTGELKTTSLNNANDAV---NELVN 167
Query: 443 VSPKEVI------------YENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEV 490
+ KEV+ ++ R + + Q + K + S +T LD
Sbjct: 168 LQSKEVVVDGELPVEITTQFKQRNILQSHQPTVLKNAEIS---------YLTQDLDDQAQ 218
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL-ISHLSRLMLDDVLRNGDILPYK 549
+ +V L + ++ S A MQ I + + I H S+ L +++RN
Sbjct: 219 QHVVALLVSYLLTTQKRSLAH---MQKAIAYQPSSFMKIDHYSKTNL-ELMRN------- 267
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV 609
R R LD T+ G RLL+ WI PL + I+ R D V+ L+ +
Sbjct: 268 -MRSGKRQGTLAWLLDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDHYFERSN 326
Query: 610 VAQYLRKLPDLERLLGRV 627
+ Q L K+ DLERL GRV
Sbjct: 327 LQQELIKVYDLERLAGRV 344
>sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4
Length = 1137
Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 177/332 (53%), Gaps = 23/332 (6%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
V D AE L L E F E + +H ++ +D + S A A G RP + Q +
Sbjct: 800 VLDCSAEWLDFL-EKFSEHYHSLCKAVHHLATVDCIFSLAKVAK--QGDYCRPTV--QEE 854
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
V ++ PV+ + LGE VPN+ L EDS+ R +++TGPNMGGK
Sbjct: 855 RKIVIKNGRHPVIDV-------LLGEQDQY-VPNNTDLSEDSE----RVMIITGPNMGGK 902
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
S+ ++ L I+AQ+G +VP E + + D IFTR+GA D I G+STF+ E T+TA +
Sbjct: 903 SSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTDTAEI 962
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958
++KAT SLVILDELGRGTST DG AIAYA + + LF THY P+ + ++
Sbjct: 963 IRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 1022
Query: 959 H-VTLQHMACAFKSNSENYSKGDQELV-----FLYRLTSGACPESYGLQVAVMAGVPQKV 1012
H V HM + G E V FLY++T G SYGL VA +A VP ++
Sbjct: 1023 HQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEI 1082
Query: 1013 VEAASHAALAMKKSIGESFKSSEQRSEFSSLH 1044
++ A+H + ++ I K + ++ ++H
Sbjct: 1083 LKKAAHKSKELEGLINTKRKRLKYFAKLWTMH 1114
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 125/483 (25%), Positives = 207/483 (42%), Gaps = 77/483 (15%)
Query: 192 DNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPSKIRDANRRRPD 251
D++++ KN+ + SKR +D+ + + + + + E L + + AN+R
Sbjct: 170 DDISLLHAKNAVSSEDSKRQINQKDTT--LFDLSQFGSSNTSHENLQKTASKSANKR--- 224
Query: 252 DPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL 311
+++Y P E QY +K Q+ D +L + G Y + DAEI +EL
Sbjct: 225 -----SKSIYTPLEL---------QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAAREL 270
Query: 312 DWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISR 370
+ L I + V +LVA+GYKVG ++Q ET+ +A + +S+ SR
Sbjct: 271 NIYCHLDH--NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSR 328
Query: 371 KLVNVVTPSTTVDGTIGP-----DAV------------HLLAI---KEGNCGPDNGSVVY 410
KL + T ST + + P DAV +LL I KE G++
Sbjct: 329 KLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI 388
Query: 411 GFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470
G V A V + D AS + L + + P E++ + L ++ + + + ++ S
Sbjct: 389 GIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVS 447
Query: 471 AA-------------LELTPAM-AVTDFL--DASEVKKLVQLNGYFN---------GSSS 505
E + A AVT+F D ++K ++G N +
Sbjct: 448 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAII 507
Query: 506 PWSKA--LENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTLY 563
+ K LE ++ F L + ++ + LRN +IL + ++ G L+
Sbjct: 508 KYLKEFNLEKMLSKPENFKQLSSKMEFMT--INGTTLRNLEILQNQT---DMKTKGSLLW 562
Query: 564 -LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV-EYLMKNSEVVMVVAQYLRKLPDLE 621
LD TS G+R L+ W+ PL + IN RLD V E L S V + +LRKLPD+E
Sbjct: 563 VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIE 622
Query: 622 RLL 624
R L
Sbjct: 623 RGL 625
>sp|Q1WT15|MUTS_LACS1 DNA mismatch repair protein MutS OS=Lactobacillus salivarius (strain
UCC118) GN=mutS PE=3 SV=1
Length = 876
Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 28/305 (9%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFAL 802
E+ A++ +DVL+SFA + P + DN L IK WHP
Sbjct: 537 ELAGAVAALDVLQSFATVSEQGHFV-----------KPELTTDNHS--LDIKDGWHPVVE 583
Query: 803 GENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861
G +PNDI + +D D LL+TGPNM GKST +R L V++AQ+GCFVP +
Sbjct: 584 KVMGKQSYIPNDIKMDDDLD-----VLLITGPNMSGKSTYMRQLALTVVIAQIGCFVPAK 638
Query: 862 MCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921
+ + D IFTR+GA D +++GESTF+VE ET L AT++SL++ DE+GRGT+T+D
Sbjct: 639 SAKMPIFDQIFTRIGAADDLISGESTFMVEMKETNVALMNATRNSLLLFDEIGRGTATYD 698
Query: 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQ 981
G A+A A+ + I+ + LF+THYH LT S + H+ K+
Sbjct: 699 GMALAQAIIEYVHNNIHAKTLFSTHYHELTILDESLDKLQNVHVGAIEKNG--------- 749
Query: 982 ELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
EL+FL+++ G +SYG+ VA +AG+P K+++ A ++ + S+E +E
Sbjct: 750 ELIFLHKMQEGPADKSYGIHVAKLAGMPDKLLKRADSILNKLESENDFTVDSTESYAEEK 809
Query: 1042 SLHEE 1046
+ E+
Sbjct: 810 HIEEK 814
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 170/370 (45%), Gaps = 40/370 (10%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQ 325
K + +QY +K QY D LF+++G FYE++ DA G + L+ +T V
Sbjct: 6 KQTPMMEQYMQIKKQYPDAFLFYRLGDFYEMFYDDAIKGSQILELTLTQRNKKAVDPIPM 65
Query: 326 VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
G+ + ++ LV +GYKV EQ+E +QAK ++ R+++ +VTP T +D +
Sbjct: 66 CGVPHHAAQNYIDILVDKGYKVAICEQVEDPKQAKG-----MVKREVIQLVTPGTIIDES 120
Query: 386 IG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQV 443
G + +L A+ N YGFA+VD + + V +N + + L+ +
Sbjct: 121 AGEAKENNYLTALHFENDQ-------YGFAYVDLSTGELKVSVLN---TIDTILNELISL 170
Query: 444 SPKEVIYE---NRGLCKEAQKALRKFSAGSAALELTP--AMAVTDFLDASEVKKLVQLNG 498
KE++ + N + + K L+ + E + + A D ++ EV+ + L
Sbjct: 171 RTKEIVVDSSVNDDVLNQI-KNLKILISEQNDTEDSSEVSFASQDVENSVEVEVIKHLIT 229
Query: 499 YFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD 558
Y + L+ + ++ S + H R + ++LRN +
Sbjct: 230 YLKITQKRALSHLQRAVHYEP--SQYLKMDYHAKRNL--ELLRN---------LRTQKKS 276
Query: 559 GQTLY-LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
G L+ LDS T+ G RLL+ WI PL +++ I R +VE L+ + + + L +
Sbjct: 277 GTLLWLLDSTKTAMGGRLLKQWIDRPLINLKEIEARQSMVENLLTHYFERSGLQEELVNV 336
Query: 618 PDLERLLGRV 627
DLERL G+V
Sbjct: 337 YDLERLAGKV 346
>sp|Q045Q5|MUTS_LACGA DNA mismatch repair protein MutS OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=mutS PE=3 SV=1
Length = 857
Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 52/349 (14%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVIHA-------ISCIDVLRSFAVTAS 762
PD + H+ L+AE S +E LF++ + I A ++ +DVL +FA +
Sbjct: 496 PDLKEHESLILEAEAKSTGLEYDLFVKLRENVKKYIPALQKLAKQVASLDVLTNFATVSE 555
Query: 763 MSSGAMHRP--------LILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDI 814
++ RP + + ++P V Q V+ G +PND+
Sbjct: 556 QNNYV--RPDFTVDKQEINVVNGRHPVVEQ-----VM-------------TAGSYIPNDV 595
Query: 815 LLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR 874
+ +D+D L+TGPNM GKST +R L I+AQ+GCFVP + L + D IFTR
Sbjct: 596 KMDQDTD-----IFLITGPNMSGKSTYMRQMALIAIMAQIGCFVPADSATLPIFDQIFTR 650
Query: 875 LGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934
+GA D +++G+STF+VE +E LQ AT+ SLV+ DE+GRGT+T+DG A+A A+ + L
Sbjct: 651 IGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEIGRGTATYDGMALAGAIVKYLH 710
Query: 935 ERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGAC 994
+++ + LFATHYH LT TL+H+ +E K L+FL+++ G
Sbjct: 711 DKVGAKTLFATHYHELTD-----LDQTLKHLKNIHVGATEENGK----LIFLHKILPGPA 761
Query: 995 PESYGLQVAVMAGVPQKVV-EAASHAALAMKKSIGESFKSSEQRSEFSS 1042
+SYG+ VA +AG+P KV+ EA + K+ GE +SEQ F++
Sbjct: 762 DQSYGIHVAQLAGLPHKVLREATTMLKRLEKQGAGELQPASEQLDLFTA 810
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 164/377 (43%), Gaps = 47/377 (12%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K + KQY+ +K QY D LF++VG FYEL+E DA G + L+ +T K +
Sbjct: 2 AKKDTTPMMKQYYEIKEQYPDAFLFYRVGDFYELFEDDAVKGAQILELTLTHRS-NKTKN 60
Query: 326 ----VGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
G+ +D V LV +GYKV EQLE ++AK ++ R ++ ++TP T
Sbjct: 61 PIPMAGVPHLAVDTYVNTLVEKGYKVALCEQLEDPKKAKG-----MVKRGIIQLITPGTM 115
Query: 382 VDGT--IGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ D+ +L ++ N G +G A+ D + + + D A
Sbjct: 116 MHERPDQAKDSNYLTSVISTNSG-------FGLAYSDLSTGETFSTHLTDFEGVA---NE 165
Query: 440 LMQVSPKEVIYE------NRGLCKEAQKALR---KFSAGSAALELTPAMAVTDFLDASEV 490
L+ + +EV+Y N+ K+A + K A + + + D +E+
Sbjct: 166 LLSLQTREVVYNGHLTEANKDFLKKANITVSEPVKVEGEHAEI----SYVTQNLTDDAEI 221
Query: 491 KKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKV 550
K QL Y S+ S A V Q L +SH + L+ + K
Sbjct: 222 KATKQLVAYL-LSTQKRSLAHLQVAQSYEPTQYLQ--MSHTVQTNLELI---------KS 269
Query: 551 YRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610
+ +M LD T+ G RLL+SWI PL V I R ++V+ L+ + V
Sbjct: 270 AKTSKKMGSLFWLLDKTSTAMGGRLLKSWIERPLLSVTEITRRQEMVQALLDDYFTREKV 329
Query: 611 AQYLRKLPDLERLLGRV 627
L+ + DLERL GR+
Sbjct: 330 IDSLKGVYDLERLTGRI 346
>sp|B0VUC9|MUTS_ACIBS DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
SDF) GN=mutS PE=3 SV=1
Length = 881
Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 177/332 (53%), Gaps = 37/332 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEEWLKTIVNVSRV 1057
+ ++S Q F++L E +I + +V
Sbjct: 811 QQQQHLQTSVQSDLFATLDSEVTPSIQVIEKV 842
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/381 (24%), Positives = 167/381 (43%), Gaps = 62/381 (16%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE 451
+L+A+ C N GFA +D +A V D L L ++ P E++ +
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSAGIFKVQ--QQDYKPEQLPIELARLMPSEILID 184
Query: 452 ----NRGLCKEAQKALR---------KFSAGSAALELTPAMAVTDF----LD-----ASE 489
+ + ++ +K L F+ +A L +V+ LD +
Sbjct: 185 EDLVDPNIIEQIKKHLDCPVTKRPNVDFNLNNAQKTLCDQFSVSTLSGFGLDPLPLAKAA 244
Query: 490 VKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYK 549
L+ ++ P +++ +++ F AL I+ + +++ + +G L ++
Sbjct: 245 AAALIHYAKETQKTALPHIRSI--LLEQSTDFIALDP-ITRRNLEIIEPLFEHGTSL-FQ 300
Query: 550 VYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEV 606
+ DC QT + G RLL + P++D ++ RLD +E L++ S V
Sbjct: 301 LVNDC-----QT--------AMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPV 347
Query: 607 VMVVAQYLRKLPDLERLLGRV 627
+V L+++ D+ER+L RV
Sbjct: 348 RLV----LKEIGDIERVLSRV 364
>sp|A5UZK7|MUTS_ROSS1 DNA mismatch repair protein MutS OS=Roseiflexus sp. (strain RS-1)
GN=mutS PE=3 SV=1
Length = 1085
Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 162/302 (53%), Gaps = 29/302 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
+ DL+ + + ++ ++ I+ IDV + A A G RP + ++
Sbjct: 717 LIDLERRAFARICDVVTGAGARLLRTARMIATIDVFAALAEAAV--RGRYVRPELYDDTR 774
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
L+I G HP VPNDI + ++ L+TGPNM GK
Sbjct: 775 ------------LRIVGGRHPVVEQTLDETFVPNDIEMDTETRQIC----LITGPNMSGK 818
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST+LR L ++AQ+G FVP + + L D IFTR+GA D I TG STF+VE TETA++
Sbjct: 819 STVLRQVALIALMAQIGSFVPADAAEIGLVDRIFTRIGAQDDIATGRSTFMVEMTETAAL 878
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFAS 956
L ++T+ SL+ILDE+GRGTST+DG AIA AV + R+ CR LFATHYH LT +
Sbjct: 879 LAQSTRRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCRTLFATHYHELTDLERT 938
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P + HMA ++ D +VFL+ L G SYG+ VA +AG+PQ V+ A
Sbjct: 939 LPRLKNYHMAA---------TEQDGRVVFLHELRPGGADRSYGIHVAELAGIPQSVIRRA 989
Query: 1017 SH 1018
S
Sbjct: 990 SE 991
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/432 (21%), Positives = 169/432 (39%), Gaps = 84/432 (19%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG------- 321
++ A +QY ++K+ + D +L +++G FYE ++ DA++ L+ +T
Sbjct: 21 ELHAWYRQYRSLKAAHPDAILLYRLGDFYETFDDDAKLVADLLEVTLTYKEFASQKGRDQ 80
Query: 322 --KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS-----------------EQAKAR 362
+C GI ++ V +LV GY+V EQ+ + EQ
Sbjct: 81 KQRCPMAGIPYHAVEGYVARLVGAGYRVAIAEQITETPSSRTDTRPRSIFAAGIEQTSLT 140
Query: 363 HTNSVISRKLVNVVTPSTTVD-GTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALR 421
+N ++ RK+V V+TP T ++ G I + + LA D+G + G A+ D +
Sbjct: 141 GSNRMVERKVVRVITPGTIIESGMIPAERNNYLAA----LIADHGRI--GLAYADLSTGE 194
Query: 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAV 481
+ + + L +++ E++ +R + L SA LE
Sbjct: 195 FAAVEFSGERAAQQAQGELTRLNAAEILVPDRADLR-----LPGLEPSSARLEQDLEFLT 249
Query: 482 TD----FLDASEVKKLVQLNG---YFNGSSSPWS------KALENVMQHDIGFSALGGL- 527
+ L V + V+ + +G + W + + + H G +L G
Sbjct: 250 REERELLLPGERVARRVERENNARWAHGRVTAWPERRWDLRNAHDTLLHQFGVRSLAGFG 309
Query: 528 -------------ISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------------ 562
I +R V+ N + D + +D QT
Sbjct: 310 LEDRPLAIRAAGAIVQYARETQQGVVANLRSIRAYTPGDAMFLDPQTQRNLELLEGASGT 369
Query: 563 -------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
LD T G RLLR W+ PL D+ ++ R D VE + ++ + V + LR
Sbjct: 370 TRGSLIGVLDQTRTPMGARLLRRWVSQPLCDLTRLHARHDAVERFVTDAILRASVRETLR 429
Query: 616 KLPDLERLLGRV 627
++ D+ER++ R+
Sbjct: 430 RVGDMERVVNRI 441
>sp|Q0C5G6|MUTS_HYPNA DNA mismatch repair protein MutS OS=Hyphomonas neptunium (strain ATCC
15444) GN=mutS PE=3 SV=1
Length = 890
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 178/322 (55%), Gaps = 41/322 (12%)
Query: 714 YQNHDVTDL---------DAETLSILI-ELFIEKASQWSE----VIHAISCIDVLRSFAV 759
+ H++ DL +A+ I I E F K + + + A++ +DV S AV
Sbjct: 526 FSTHELADLAGRIGRAEDEAKAREIAIFEAFCAKVEELTGPLAVIAAALAELDVAASHAV 585
Query: 760 TASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF---ALGENGGLPVPNDILL 816
A+ +GA+ RP + P+ PV + KGL HP AL + G ND+ L
Sbjct: 586 WAA-ETGAV-RPALDPR------------PVFEAKGLRHPVVEAALRKEGKGFTANDLHL 631
Query: 817 GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG 876
+ ++ R LL+TGPNM GKST LR + LAVILAQ G FVP L L+D +F+R+G
Sbjct: 632 DAEGNEGA-RFLLVTGPNMAGKSTYLRQSALAVILAQAGAFVPAASLRLGLSDRVFSRVG 690
Query: 877 ATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936
A+D + G STF+VE ETA++L +AT +S VILDE+GRGT+T+DG AIA+A L +
Sbjct: 691 ASDDLARGRSTFMVEMVETAAILNQATPESFVILDEVGRGTATWDGLAIAWAAAEHLHDT 750
Query: 937 INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPE 996
CR +FATHYH LT A P A + S + Q+L+FL+ + G
Sbjct: 751 NRCRAIFATHYHELTDLAARMP---------AASNASLKAREWKQDLIFLHEVQPGPADR 801
Query: 997 SYGLQVAVMAGVPQKVVEAASH 1018
SYG+QVA +AG+P+ V A
Sbjct: 802 SYGVQVAKLAGLPRAAVARAGQ 823
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 171/394 (43%), Gaps = 60/394 (15%)
Query: 264 PEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKC 323
P A + + QY ++K+++ LLFF++G FYEL+ DA LD +T G
Sbjct: 7 PSATTEPTPFMAQYLSIKAEHPGALLFFRMGDFYELFFQDAVEAASILDITLTSRGEHDG 66
Query: 324 RQV---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST 380
+ + G+ + + +L+ G +V EQ+ET +AK R + S++ R +V +VTP
Sbjct: 67 KPIPMAGVPYHAAEGYLARLIKGGCRVAVCEQMETPAEAKKRGSKSIVQRGVVRIVTP-- 124
Query: 381 TVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW---VGTINDDASCAA-L 436
GT+ DA LL ++G F+ AAL V G + A AA L
Sbjct: 125 ---GTLTEDA--LLPARQGQA-----LAAIAFSGAGEAALAVCDVSTGAFDLTAIPAARL 174
Query: 437 GALLMQVSPKEVIYE----NRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKK 492
G L+ E++ +R L EA+ L SA + P A T + +K+
Sbjct: 175 GEALLAWPLSELVISADDADRPLILEARGFL------SAPITERPGRAATAKSGEALLKE 228
Query: 493 LVQLNGYFNGSSSPWSKALENVMQHD-IGFSALGGLISHLSRLMLDDVLR---------N 542
+ L AL+++ + F+A G L+ ++ +R
Sbjct: 229 VFGL------------AALDSLGDFSRVEFAAAGLLLDYVKLTQAGAPIRLRAPRRPDTG 276
Query: 543 GDILPYKVYRDCLRM--------DGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
G +L R L + DG L +D VT+ G RLL + + P + V I +R
Sbjct: 277 GILLIDPATRASLEIDRSISGGRDGTLLAVIDRTVTAPGARLLAARLARPSRSVSEITSR 336
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
D V +L+ ++ + V L+ PDLER + R+
Sbjct: 337 YDAVSHLLGDAGQLEDVRVRLKSAPDLERAVMRL 370
>sp|A4SFT1|MUTS_PROVI DNA mismatch repair protein MutS OS=Prosthecochloris vibrioformis
(strain DSM 265) GN=mutS PE=3 SV=1
Length = 874
Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 166/300 (55%), Gaps = 36/300 (12%)
Query: 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTAS-----MSSGAMHRPLILPQ 776
L+AE L E+A+ E AI+ ID L SFA++A H L++ +
Sbjct: 537 LEAEIFQALCASIAERAASIQESALAIAEIDTLASFALSAKEYGYCKPEMKEHEGLLITE 596
Query: 777 SKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836
++P + +I PF V ND D R L++TGPNM
Sbjct: 597 GRHPVLE--------RIMKPDEPF---------VKNDCHF-----DGQQRMLMITGPNMA 634
Query: 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETA 896
GKS+ LR T L V+LAQ G FVP E + + D IFTR+GA+D + +GESTFLVE E A
Sbjct: 635 GKSSYLRQTGLIVLLAQAGSFVPAERAEIGMVDRIFTRVGASDNLASGESTFLVEMNEAA 694
Query: 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956
S+L AT SL++LDE+GRGTSTFDG +IA+++ ++ R+ R LFATHYH L++
Sbjct: 695 SILNNATSSSLILLDEIGRGTSTFDGMSIAWSMSEYIITRLGARTLFATHYHELSELEER 754
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P V + + A +S + ++FL ++ G+ SYG++VA MAG+P +V+E A
Sbjct: 755 LPGV-VNYNATVVESG--------ERVIFLRKIVRGSTDNSYGIEVARMAGMPNEVIERA 805
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ 325
A K++S +QY +VK QY D LL F+VG FYE + DA ++ +T G
Sbjct: 8 ASKELSPMMRQYLDVKKQYADYLLLFRVGDFYETFFDDAATISAAVNIVLTRRSNGSAPD 67
Query: 326 V---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
+ G + + +LV +G+KV EQ+E +AK ++ R++ +VTP T
Sbjct: 68 IPMAGFPYHASEGYIARLVRKGFKVAVCEQVEDPAEAKG-----IVKREITEIVTPGVTY 122
Query: 383 DGTIGPD-------AVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTI 427
+I D AV L KEG + V G A++D + ++
Sbjct: 123 SDSILEDRHNNYLAAVAFL--KEGR------TPVAGIAYLDVTTAEFRIASL 166
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
+D V G RL+R W+ PL+ E I R D VE L+++SE+ V L ++ DLER
Sbjct: 306 MDRTVNPMGARLIRRWLQRPLRVAEAIAERHDGVEELLQSSELSEGVRCSLSEINDLERS 365
Query: 624 LGRV 627
L R+
Sbjct: 366 LARI 369
>sp|Q47DJ8|MUTS_DECAR DNA mismatch repair protein MutS OS=Dechloromonas aromatica (strain
RCB) GN=mutS PE=3 SV=1
Length = 860
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 141/229 (61%), Gaps = 17/229 (7%)
Query: 791 LKIKGLWHPFALGE---NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847
L I G HP GE + ND LL E+ R LL+TGPNMGGKST +R L
Sbjct: 581 LSITGGRHPVVEGELTNQAETFIANDCLLAENR-----RLLLITGPNMGGKSTYMRQVAL 635
Query: 848 AVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSL 907
+LA +GC+VP + CVL D IFTR+GA+D + +G STF+VE TE A++L AT SL
Sbjct: 636 IALLAHIGCYVPADRCVLGPLDRIFTRIGASDDLASGRSTFMVEMTEAAAILHHATNQSL 695
Query: 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967
V++DE+GRGTSTFDG A+A+A+ R L+E+ LFATHY LT+ SH + L ++
Sbjct: 696 VLMDEIGRGTSTFDGMALAFAILRHLIEKNQSLTLFATHYFELTR--LSHEYSELANVHL 753
Query: 968 AFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++ +VF++ + G +SYG+QVA +AG+P VV AA
Sbjct: 754 GAVEHNDR-------IVFMHAVEEGPANQSYGIQVAALAGIPTAVVRAA 795
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 166/398 (41%), Gaps = 79/398 (19%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L K + +QY +K+ + + LLF+++G FYEL+ DAE + LD ITL+ G+ V
Sbjct: 9 LSKHTPMMRQYLALKANHPNTLLFYRMGDFYELFHEDAEKAARLLD--ITLTTRGQSAGV 66
Query: 327 GISESGID-DAVEKLVARGYKVGRIEQLETSEQAKARHTN-SVISRKLVNVVTPSTTVDG 384
I GI ++E +AR K+G E EQ T+ + R + +VTP T D
Sbjct: 67 PIKMCGIPFHSLEPYLARLVKLG--ESAVICEQIGDPATSKGPVERAVARIVTPGTLTDA 124
Query: 385 TIGPDA--VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
+ D + LLA+ G A ++ A+ I + + A L +
Sbjct: 125 ALIDDKQDLWLLAVTTHRN-------TAGIARLNLASGEF----ILIEVPTEQIPATLER 173
Query: 443 VSPKEVIY--------------------------ENRGLCKEAQKA-LRKFSAGSAALEL 475
+ P E++Y R LC + + A L F A +
Sbjct: 174 IRPAEILYPESWTPNFGVDVARTRQPDWYFEFDSARRLLCDQFEVASLAGFGAEGLKPAI 233
Query: 476 TPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLM 535
A A+ + A++ KL L G + +I + LG ++ L
Sbjct: 234 AAAGALLQYAQATQSGKLPHLRG----------------LTVEIEGAYLGLDLATRRNLE 277
Query: 536 LDDVLRNGDILPYKVYRDCLRMDGQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
L + LR G P TL+ LD+CVTS G RLLR + HPL+ + R
Sbjct: 278 LTETLR-GQPSP-------------TLFSLLDNCVTSMGSRLLRHTLHHPLRARDIPAAR 323
Query: 594 LDVVEYLMKN-SEVVMVVAQYLRKLPDLERLLGRVKAR 630
VE L+++ + V + LR + D+ER+ GRV R
Sbjct: 324 HGAVEALLEDYGRLGNEVRKALRGIADIERIAGRVALR 361
>sp|C5BMR5|MUTS_TERTT DNA mismatch repair protein MutS OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=mutS PE=3 SV=1
Length = 864
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 176/322 (54%), Gaps = 38/322 (11%)
Query: 730 LIELFIEKASQWSEVIH----AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQD 785
L E IEK ++ + A++ +DVL +FA A L+ P+ + A +
Sbjct: 534 LYEQLIEKLNEHLRELQISAVAVAELDVLNTFAERAHALK------LVKPEFRGEAGIEI 587
Query: 786 NGG--PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR 843
G PV++ + L PF +PND+ L R L++TGPNMGGKST +R
Sbjct: 588 EKGRHPVVE-QVLTDPF---------IPNDLTLNAQQ-----RMLIITGPNMGGKSTYMR 632
Query: 844 ATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903
T L V+LAQ+G +VP E C L L D IFTR+G++D + G STF+VE TETA++L AT
Sbjct: 633 QTALIVLLAQVGSYVPAEACRLGLVDRIFTRIGSSDDLAGGRSTFMVEMTETANILNNAT 692
Query: 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963
DSLV++DE+GRGTST+DG ++A+A L E++ LFATHY +T A P V
Sbjct: 693 SDSLVLMDEIGRGTSTYDGLSLAWACVEHLAEKLKSFTLFATHYFEITALPAQLPTVKNV 752
Query: 964 HM-ACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
H+ A ++ N +VFL+ + +G +SYGLQVA +AG+P V+ A
Sbjct: 753 HLDATEYQDN----------IVFLHNIQAGPASKSYGLQVAKLAGIPGAVLRQAKDVLHK 802
Query: 1023 MKKSIGESFKSSEQRSEFSSLH 1044
++ ES RS S+
Sbjct: 803 LETGKPESPAPVASRSSKPSMQ 824
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
L++ + +QY +K+Q+ + L+F+++G FYEL+ DA K LD +TL+ GK
Sbjct: 12 LEQHTPMMQQYLRIKAQHPNELVFYRMGDFYELFYEDARKAAKLLD--VTLTARGKSNGE 69
Query: 327 GISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTT 381
I +G+ ++ + KLV G V EQ+ T + RK++ VVTP T
Sbjct: 70 PIPMAGVPYHAAENYLAKLVKLGVSVAICEQI-----GDPATTKGPVERKVMRVVTPGTV 124
Query: 382 VD 383
D
Sbjct: 125 SD 126
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERL 623
L++ T+ G RLLR WI PL+D+ +++R + L++N V Q L+ + DLER+
Sbjct: 300 LNTTATAMGGRLLRRWINTPLRDLHTLHSRQSAIAALLENYRFEQ-VQQELKHIGDLERI 358
Query: 624 LGRVKAR 630
LGR+ R
Sbjct: 359 LGRIALR 365
>sp|Q9CDK9|MUTS_LACLA DNA mismatch repair protein MutS OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=mutS PE=3 SV=1
Length = 840
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 185/336 (55%), Gaps = 33/336 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + +G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TDGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKA+ SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKASSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + + I + LFATHYH LT + H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHDHIGAKTLFATHYHELTDLDEALDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS--SLH 1044
+++T G +SYG+ VA +AG+PQ ++E A ++ + K ++++ + S
Sbjct: 747 HKITEGPADKSYGIHVAKIAGLPQPLLERADLILQKLENKPLPAKKVADEQEQLSLFDFT 806
Query: 1045 EEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
E + I + R N D+ A + L LW ELK+S
Sbjct: 807 ENSSEIIEKIKR--QNVDNMTAREALNFLW-ELKDS 839
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 171/385 (44%), Gaps = 72/385 (18%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYDDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGID-----DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAAAEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKDKHYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
+ +E++ G + + L+ F E + +++ L+ E L+ L+G
Sbjct: 166 LKAREIV---AGFTLD-ESQLKVF-------ERQMNLLISEQLEIPE-NLLIDLSGL--- 210
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ-- 560
ALEN L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 ------TALEN--------QVASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFATK 255
Query: 561 ----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK 602
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 256 SSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLISNSAIQKRMEIVQIFLD 315
Query: 603 NSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 316 HFFERSDLIEALKGVYDLERLASRV 340
>sp|B0VAU7|MUTS_ACIBY DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
AYE) GN=mutS PE=3 SV=1
Length = 881
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 559 GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEVVMVVAQY 613
G +L+ ++ C T+ G RLL + P++D ++ RLD +E L++ S V +V
Sbjct: 295 GTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPVRLV---- 350
Query: 614 LRKLPDLERLLGRV 627
L+++ D+ER+L RV
Sbjct: 351 LKEIGDIERVLSRV 364
>sp|B2HX50|MUTS_ACIBC DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
ACICU) GN=mutS PE=3 SV=1
Length = 881
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 559 GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEVVMVVAQY 613
G +L+ ++ C T+ G RLL + P++D ++ RLD +E L++ S V +V
Sbjct: 295 GTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPVRLV---- 350
Query: 614 LRKLPDLERLLGRV 627
L+++ D+ER+L RV
Sbjct: 351 LKEIGDIERVLSRV 364
>sp|B7IBV9|MUTS_ACIB5 DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
AB0057) GN=mutS PE=3 SV=1
Length = 881
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 559 GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEVVMVVAQY 613
G +L+ ++ C T+ G RLL + P++D ++ RLD +E L++ S V +V
Sbjct: 295 GTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPVRLV---- 350
Query: 614 LRKLPDLERLLGRV 627
L+++ D+ER+L RV
Sbjct: 351 LKEIGDIERVLSRV 364
>sp|B7GW85|MUTS_ACIB3 DNA mismatch repair protein MutS OS=Acinetobacter baumannii (strain
AB307-0294) GN=mutS PE=3 SV=1
Length = 881
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 37/321 (11%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E E + + AI+ IDV+ +FA A +++ A RP P++
Sbjct: 544 LLENLRENIAHLQMMSSAIAQIDVIANFAHQARLNNWA--RPEFTPETG----------- 590
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+KI+G HP + PND L D R ++TGPNMGGKST +R T L
Sbjct: 591 -IKIQGGRHPVVEALSKAPFTPNDTFL-----DVQHRMAIITGPNMGGKSTFMRQTALIS 644
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA G +VP L D IFTR+G+ D + TG+STF+VE TET+ +L AT SLV+
Sbjct: 645 LLAYCGSYVPARAAKLGPIDRIFTRIGSADDLSTGKSTFMVEMTETSQILHHATNQSLVL 704
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
+DE+GRGTST+DG ++A+A L +R+ C LFATHY LT E S P +
Sbjct: 705 MDEVGRGTSTYDGLSLAWACVVDLTKRVKCLCLFATHYFELT-ELGSEPGI--------- 754
Query: 970 KSNSENYSKGDQE----LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025
+NY QE L+ L+++ G +S+GLQVA +AG+P V++ A ++K
Sbjct: 755 ----DNYHVTAQELNGNLILLHKVQQGPASQSHGLQVAKLAGIPANVIKEAQKRLRILEK 810
Query: 1026 SIGESFKSSEQRSEFSSLHEE 1046
+ ++S Q F++L E
Sbjct: 811 QQQQHLQTSVQSDLFATLDSE 831
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY VK Y LLF+++G FYEL+ DA + K L ITL+ GK I +G+
Sbjct: 18 QQYLKVKKDYQHALLFYRMGDFYELFFEDAHLAAKLLG--ITLTHRGKANGNPIPMAGVP 75
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI--GPDAV 391
+ E +AR K GR + EQ + RK+V ++TP T D + +
Sbjct: 76 YHSAEGYLARLVKAGRT--VAICEQVGEVTGKGPVERKVVRILTPGTLTDDALLTSYQSS 133
Query: 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAA 419
+L+A+ C N GFA +D +A
Sbjct: 134 NLVAL----CIHQNQ---IGFALLDLSA 154
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 559 GQTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK---NSEVVMVVAQY 613
G +L+ ++ C T+ G RLL + P++D ++ RLD +E L++ S V +V
Sbjct: 295 GTSLFQLVNDCQTAMGGRLLSRTLMQPVRDTALLDARLDAIEQLIQGYHESPVRLV---- 350
Query: 614 LRKLPDLERLLGRV 627
L+++ D+ER+L RV
Sbjct: 351 LKEIGDIERVLSRV 364
>sp|Q3JCL5|MUTS_NITOC DNA mismatch repair protein MutS OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=mutS PE=3 SV=1
Length = 863
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 163/297 (54%), Gaps = 28/297 (9%)
Query: 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGP 789
L+E F+E +A++ +DVL + A A PL+ S P + + G
Sbjct: 537 LLEQFMEPLPALRACANALAELDVLHNLAERAKTLEYVA--PLL---SDQPGIFIERGRH 591
Query: 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849
+ + L PF VPND+ L E R L++TGPNMGGKST +R T L V
Sbjct: 592 PVVEQTLEDPF---------VPNDLTLHEAR-----RMLIITGPNMGGKSTYMRQTALIV 637
Query: 850 ILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVI 909
+LA +G FVP V+ D IFTR+GA D + G STF+VE TETA++L AT+ SLV+
Sbjct: 638 LLAHIGSFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTETANILHNATEHSLVL 697
Query: 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969
LDE+GRGTSTFDG ++A+AV L ++ LFATHY LT P V H+
Sbjct: 698 LDEVGRGTSTFDGLSLAWAVVSHLANKVRSLTLFATHYFELTTLPECLPGVVNLHLTA-- 755
Query: 970 KSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
++ + +VFL+ + G +SYGLQVA +AGVPQ+++ A + ++ +
Sbjct: 756 -------TEHKEHIVFLHAVKEGPASQSYGLQVAALAGVPQEIIAQARQQLMELENN 805
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 164/387 (42%), Gaps = 56/387 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV- 326
K + +QY +K++Y + LL +++G FYEL+ DA+ + LD +T G +
Sbjct: 8 KPHTPMMQQYLRIKAEYPNTLLLYRMGDFYELFYDDAQRASELLDIALTSRGRSAGEPIP 67
Query: 327 --GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPST-TVD 383
GI +D + +LV +G V EQ+ +K + R++V ++TP T T +
Sbjct: 68 MAGIPYHALDSYLARLVRQGESVAICEQIGNPAASKG-----PVERQVVRIITPGTVTEE 122
Query: 384 GTIGPDAVHLLAI--KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
+ +LLA KEG+ V+GFA +D + R I + AS +A + L
Sbjct: 123 ALLEARRDNLLAALQKEGD--------VFGFAVLDLCSGRF---NILEVASESAATSELA 171
Query: 442 QVSPKE-VIYENRGLC---KEAQKALRK-----FSAGSAALELTPAMAVTDF--LDASEV 490
++ P E ++ E+ L + + +R F SA +L D E+
Sbjct: 172 RIRPAELLVSEDLALILVDSKTEAVVRPLPPWYFDRESAQRQLCRQFGTQDLAGFGCEEM 231
Query: 491 KKLVQLNG----YFNGSSS---PWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNG 543
K + G Y + P AL+ Q + ++LD R
Sbjct: 232 KTAIAAAGCLLHYVQDTQRTQFPHIHALQVERQE--------------TSIILDPSTRRN 277
Query: 544 DILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
L + D R + LD T+ G RLLR ++ PL+D + R + L++
Sbjct: 278 LELEESLSGDSGR-NTLIAVLDHTATAMGSRLLRRYLHRPLRDQTLLKQRQQALATLLEG 336
Query: 604 SEVVMVVAQYLRKLPDLERLLGRVKAR 630
+ V+ LR + D+ER+L RV R
Sbjct: 337 G-LSDVLQTLLRGIGDIERILSRVALR 362
>sp|A2RP10|MUTS_LACLM DNA mismatch repair protein MutS OS=Lactococcus lactis subsp.
cremoris (strain MG1363) GN=mutS PE=3 SV=1
Length = 840
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 183/343 (53%), Gaps = 47/343 (13%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TEGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP E L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAETANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKAT SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + E I + LFATHYH LT H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHEHIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA-------SHAALAMKKSIGESFKSSEQRS- 1038
+++T G +SYG+ VA +AG+PQ ++E A + L KK E EQ S
Sbjct: 747 HKITDGPADKSYGIHVAKIAGLPQTLLERADLILQKLENKPLPAKKVADE----QEQLSL 802
Query: 1039 -EFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHELKNS 1080
+F+ E ++ I N D+ A + L LW ELK+S
Sbjct: 803 FDFAENSSEIIEKIKG-----QNVDNMTAREALNFLW-ELKDS 839
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 74/386 (19%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAATEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D + Y +++D + V +++ +A+ +
Sbjct: 116 DTANSVDNNFLVAI-------DFKAKRYALSYMDLSTGEFKVTELSE---FSAVVGEIAS 165
Query: 443 VSPKEVIYENRGL-CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ +E++ G EAQ + E + +++ + E L++L+G
Sbjct: 166 LKAREIVV---GFPLDEAQVKV---------FERQMNLLISEQFEIPE-NLLIELSGL-- 210
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ- 560
ALEN A L++++ + D+ ++ Y++ +D L+MD
Sbjct: 211 -------TALEN--------QAASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQMDFAT 254
Query: 561 -----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 255 KSSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFL 314
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 315 DHFFERSDLIEALKGVYDLERLASRV 340
>sp|P25847|MSH2_YEAST DNA mismatch repair protein MSH2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSH2 PE=1 SV=2
Length = 964
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 170/315 (53%), Gaps = 23/315 (7%)
Query: 747 AISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806
++ +DV+ SFA T+S + RP + P + HP ++
Sbjct: 616 VLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTH---------LISSRHPVLEMQDD 666
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
+ ND+ L D L ++TGPNMGGKST +R + ++AQ+GCFVPCE ++
Sbjct: 667 ISFISNDVTLESGKGDFL----IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIA 722
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D I R+GA D + G STF+VE ETAS+L+ A+++SL+I+DELGRGTST+DG+ +A
Sbjct: 723 IVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLA 782
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
+A+ + +I C LFATH+H LT+ P+V H+ + N + D+++ L
Sbjct: 783 WAIAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKHDDEDITLL 842
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK--KSIGESFKSS--------EQ 1036
Y++ G +S+G+ VA + P+K+V+ A A + K+ E K + E
Sbjct: 843 YKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKTNNEDLKKAKLSLQEVNEG 902
Query: 1037 RSEFSSLHEEWLKTI 1051
+L +EW++ +
Sbjct: 903 NIRLKALLKEWIRKV 917
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 59/300 (19%)
Query: 405 NGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYE----NRGLCKEAQ 460
+G+ + G AF+D A +V + I D+ + L + L+Q+ KE + + N E Q
Sbjct: 152 DGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQ 211
Query: 461 KALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP--WSKALENVMQHD 518
K + + L + ++F + L +L G S P +SK
Sbjct: 212 KVINVIDRCGCVVTL---LKNSEFSEKDVELDLTKLLGDDLALSLPQKYSK--------- 259
Query: 519 IGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL---------------- 562
+ A LI +L L D + +++ +K+ ++ +++D +
Sbjct: 260 LSMGACNALIGYLQLLSEQDQVGKYELVEHKL-KEFMKLDASAIKALNLFPQGPQNPFGS 318
Query: 563 ----------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
L+ C T++G RLL W+ PL +++ IN R D+V+YL
Sbjct: 319 NNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYL 378
Query: 601 MKNSEV-VMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVK 659
+ E+ M+ ++YL +PD+ RL ++ R + + K++ + V+VF S ++
Sbjct: 379 IDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRI-PEIVQVFTSFLE 437
>sp|Q88UZ7|MUTS_LACPL DNA mismatch repair protein MutS OS=Lactobacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=mutS PE=3 SV=1
Length = 896
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 179/316 (56%), Gaps = 38/316 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LF------IEKASQWSEVI-HAISCIDVLRSFAVTAS 762
P+ ++H+ L+AE+ S +E LF ++KA Q + + A++ IDVL+SFAV +
Sbjct: 496 PELKSHESLILEAESHSTDLEYQLFTKVRETVKKAIQRLQTLAKAVAAIDVLQSFAVVSE 555
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLP-VPNDILLGEDSD 821
RP L +S + LKI HP G VPN++ + D
Sbjct: 556 --DYHFVRPK-LTKSHD-----------LKIVDGRHPVVEKVMGNQSYVPNNVTMSPDE- 600
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L VI+AQ+GCFVP + L + D IFTR+GATD +
Sbjct: 601 ----TVLLITGPNMSGKSTYMRQLALTVIMAQIGCFVPAKSAQLPIFDQIFTRIGATDDL 656
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
++G+STF+VE E + LQ AT +SLV+ DE+GRGT+T+DG A+A A+ + I+ +
Sbjct: 657 ISGQSTFMVEMQEANNALQHATANSLVLFDEIGRGTATYDGMALAQAIIEFVHNHIHAKT 716
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT L ++ ++ D ELVFL+++ GA +SYG+
Sbjct: 717 LFSTHYHELT---------ALDQELSGLRNVHVGATEQDGELVFLHKVEPGAADKSYGVH 767
Query: 1002 VAVMAGVPQKVVEAAS 1017
VA +AG+P ++E A+
Sbjct: 768 VAKLAGMPTSLLERAN 783
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 48/368 (13%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL---SGVGKCRQVGISES 331
+QY+ VK+QY D LF+++G FYE++ DA G + L+ +T S G+
Sbjct: 12 RQYFAVKNQYPDAFLFYRLGDFYEMFFDDAIKGAQLLELTLTTRNHSAENPIPMCGVPHR 71
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD--GTIGPD 389
+ + ++ LV +GYKV EQ+E + AK ++ R+++ +VTP TT++
Sbjct: 72 AVQNYIDILVDKGYKVAICEQMEDPKLAKG-----MVKREVIQLVTPGTTLERGAEQAKT 126
Query: 390 AVHLLAIKEGNCGPDNGSVVYGFAFVDCAA--LRVWVGTINDDASCAALGALLMQVSPKE 447
+L A+ + + YGFA+ D + L+ V T ND L L + KE
Sbjct: 127 NNYLTALIQRDQQ-------YGFAYADLSTGELKTSVLTTND-----TLINELTSLQTKE 174
Query: 448 VIYENRGLCKEAQKALRKFSA-GSAALELTPAMAVT----DFLDASEVKKLVQLNGYFNG 502
++ ++ + + + ++ S +TP ++ D E + + +L Y
Sbjct: 175 IVVDD-SVASDLRDQIKTLGILISEQNNVTPQAQLSYLTQDLTVDLEQQVVERLLMYITV 233
Query: 503 SSSPWSKALENVMQHDIGFSALGGLISHLSR--LMLDDVLRNGDILPYKVYRDCLRMDGQ 560
+ L+ + ++ + + H S+ L L +R G + G
Sbjct: 234 TQKRSLAHLQKAIAYEPSYFL---KLDHNSKYNLELMKSIRTG------------KKQGT 278
Query: 561 TLYL-DSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPD 619
L+L D T+ G RLL+ WI PL I R + V L+ + + + L K+ D
Sbjct: 279 LLWLLDETKTAMGGRLLKQWIDRPLIVKADIETRQNKVATLLDHYFERSNLQEELTKVYD 338
Query: 620 LERLLGRV 627
LERL GRV
Sbjct: 339 LERLAGRV 346
>sp|Q7NLT8|MUTS_GLOVI DNA mismatch repair protein MutS OS=Gloeobacter violaceus (strain PCC
7421) GN=mutS PE=3 SV=1
Length = 890
Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 144/243 (59%), Gaps = 30/243 (12%)
Query: 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVL 865
G VPND +G +++ P ++LTGPNM GKS+ +R L +LAQ+G FVP VL
Sbjct: 662 AGFFVPNDARMGAEAE---PDLIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARGAVL 718
Query: 866 SLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925
+AD IFTR+GA D + TG+STF+VE TETA++L AT SLV+LDE+GRGT+TFDG AI
Sbjct: 719 GVADRIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEIGRGTATFDGLAI 778
Query: 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQEL-- 983
A+AV L I CR +FATHYH L E AS S NY QEL
Sbjct: 779 AWAVAEYLASHIRCRTIFATHYHEL-NELAS------------VVSGVANYQVTVQELAD 825
Query: 984 --VFLYRLTSGACPESYGLQVAVMAGVPQKV----------VEAASHAALAMKKSIGESF 1031
VFL+R+T G SYG++V +AG+P V VE S A+ ++ S G +
Sbjct: 826 RIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVARARTVLAQVEQHSQIAVGLRDSNGSAS 885
Query: 1032 KSS 1034
+S+
Sbjct: 886 ESA 888
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 164/419 (39%), Gaps = 89/419 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSG------VGKCRQVGI 328
+QY VK+Q+ LL +++G FYE + DAEI +EL+ I L+G +G+ GI
Sbjct: 26 QQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSRELE--IVLTGRQAGDKIGRIPMAGI 83
Query: 329 SESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRK----------------- 371
++ +L+ +GY V +Q+E+ EQAK R + ++R+
Sbjct: 84 PHHALERYCAQLIEKGYAVVICDQVESPEQAKERARQAKVARRSKSDGDAPLLPLLLEDG 143
Query: 372 ----------------LVNVVTPSTTVDGT--IGPDAVHLLA-IKEGNCGPDNGSVVYGF 412
+ V+TP T ++ +G +L A ++ G C +G
Sbjct: 144 EQIDWEGAESVLVRRAVTRVLTPGTVLEDQLLVGRRNNYLAALVQAGEC--------WGL 195
Query: 413 AFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAA 472
AF D + V + S AL L+++ P EV+ G + LR A S
Sbjct: 196 AFADISTGEFQVTQLE---SAEALVQELLRLQPAEVLLS--GDAPDPLVLLRPGEASSER 250
Query: 473 LELTPA-----MAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGL 527
E P+ + + + E ++L+ G S EN+ + A GGL
Sbjct: 251 PECLPSQFCYTLRPRRYFELDEARRLLMET---FGVRSLEGFGCENL---PLAVRAAGGL 304
Query: 528 ISHL--------------------SRLMLDDVLRNGDILPYKVYRDCLRMDGQTLYLDSC 567
+ HL L+LD R L V RD + LD
Sbjct: 305 VQHLLETQRGVSIPLEGIRTYTLSQYLILDHQTRRNLELTQTV-RDGAQYGSLLWALDRT 363
Query: 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGR 626
T G R LR W+ PL D I R D V L + + + L + DLERL GR
Sbjct: 364 RTVMGGRALRRWLLQPLLDTRAIGRRQDSVAELYDEGLLRERLQRILESVYDLERLAGR 422
>sp|Q0AYB5|MUTS_SYNWW DNA mismatch repair protein MutS OS=Syntrophomonas wolfei subsp.
wolfei (strain Goettingen) GN=mutS PE=3 SV=1
Length = 859
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 164/287 (57%), Gaps = 32/287 (11%)
Query: 743 EVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPF-- 800
E HAI+ +DVL+ A A ++ RP I DN G + +I+ HP
Sbjct: 550 ETAHAIAILDVLQGLAEVAYQNN--YIRPEI-----------DNSGKI-RIRAGRHPVVE 595
Query: 801 -ALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
AL E VPND+ L D R ++TGPNMGGKST +R L V++AQ+G F+P
Sbjct: 596 KALRE--ARFVPNDLQLDRDK----ARFAIITGPNMGGKSTFMRQAALLVLMAQMGSFIP 649
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E + L D IFTR+GA+D + G+STF+VE E A++L A+ +SLVILDE+GRGTST
Sbjct: 650 AEEARIGLVDKIFTRVGASDDLAAGQSTFMVEMIEVANILNNASDNSLVILDEIGRGTST 709
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
+DG +IA AV L+E ++LFATHYH LT+ P + +++ + K
Sbjct: 710 YDGLSIAQAVSEYLLENSRSKVLFATHYHQLTRLAEKLPGII--NLSVSVKETGNT---- 763
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026
+VFL ++ G +SYGL VA +AG+P+K++ A ++K+
Sbjct: 764 ---VVFLKKVLPGKADKSYGLHVARLAGLPEKLIIRAEDILQGLEKN 807
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 171/398 (42%), Gaps = 81/398 (20%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL--SGVG-KCRQVGISES 331
+QY +K + D +LFF++G FYE++ DA I +EL+ +T G G K G+
Sbjct: 9 QQYLQIKEEQQDAILFFRLGDFYEMFFEDARIASRELEIVLTARDGGAGSKIPMCGVPYH 68
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGPDAV 391
+D+ + +L+ RGYKV EQ+E +AK ++ R++ +VTP T ++ + A
Sbjct: 69 SVDNYLARLINRGYKVAICEQVEDPREAKG-----IVKREVTRIVTPGTIIEEQLLDQAK 123
Query: 392 H--LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVI 449
+ L A++E + G A++D + W+ I + + + + + ++++SP E +
Sbjct: 124 NNFLAAVEE-------EPLCTGIAYIDISTGEFWLSEIAGENARSRVESEILRISPAECL 176
Query: 450 YENRG----------------------------------LCKEAQKA-LRKFSAGSAALE 474
G L ++ Q A L F S +
Sbjct: 177 LAGSGSLTGSWEEEWLRQQNITLTVWDELPLSLERAESLLLRQLQVASLESFGLKSYSAG 236
Query: 475 LTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRL 534
+ A + FL+ ++ L + SS +N ++ D +S L
Sbjct: 237 IKAAARIIAFLEETQKTSLQHIKSLRCYSS-------DNFLEMDF-YSR--------RNL 280
Query: 535 MLDDVLRNGDILPYKVYRDCLRMDGQTL-YLDSCVTSSGKRLLRSWICHPLKDVEGINNR 593
L LR G + +G L LD T+ GKRLLR WI PL++ I R
Sbjct: 281 ELTATLREG------------KREGSLLSILDESRTAMGKRLLRRWIEQPLREAGEIEER 328
Query: 594 LDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARV 631
LD V+ L + + L ++ DLERL G++ A V
Sbjct: 329 LDAVDELKNTLSLRTELTPLLSRINDLERLGGKIGASV 366
>sp|P61672|MUTS_TREDE DNA mismatch repair protein MutS OS=Treponema denticola (strain ATCC
35405 / CIP 103919 / DSM 14222) GN=mutS PE=3 SV=1
Length = 891
Score = 189 bits (481), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 121/279 (43%), Positives = 160/279 (57%), Gaps = 34/279 (12%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-- 805
++ +DV +SFA A +L P + D+G +L I G HP EN
Sbjct: 562 VAELDVNQSFAQAA-----------VLHAWTRPELCSDSG--ILNITGGRHPVV--ENHL 606
Query: 806 -GGLPVPNDILL--GEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859
G VPN I L GE+S D+ +P ++TGPNM GKST LR T L +LAQ+G FVP
Sbjct: 607 RAGDFVPNSIKLLSGENSNPEDETIPSFAVITGPNMAGKSTFLRQTALICLLAQIGSFVP 666
Query: 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919
E VLS D IF R+GATD + GESTFLVE ETA +L AT++SLVI+DE+GRGTS
Sbjct: 667 AEKAVLSPVDKIFCRVGATDNLARGESTFLVEMIETAYILNSATRNSLVIMDEVGRGTSM 726
Query: 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKG 979
DG AIA AV L+ I + LFATHYH LT+ L+H + + +
Sbjct: 727 EDGLAIAQAVSEHLLNTIKAKTLFATHYHELTR---------LEHEKII--NLKLDVLEA 775
Query: 980 DQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH 1018
+ ++VFL ++ GA SYG+ VA +AG+PQ V+ A +
Sbjct: 776 EGKIVFLKKVVHGAAGNSYGIHVAGLAGIPQSVLTRAEN 814
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 161/391 (41%), Gaps = 56/391 (14%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
K + +QY ++K++Y D +LFF++G FYE++ +A + L+ +TL+ G
Sbjct: 3 KPQTPMMRQYLSIKAKYKDEILFFRLGDFYEMFFDEAVEVSRILN--LTLTKRNDVPMCG 60
Query: 328 ISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV-DGTI 386
I + +L+ G K+ EQ + RK+V V+TP T D +
Sbjct: 61 IPYHAAKIYIARLLRAGKKIA------ICEQVTEPVAGGLTERKVVEVITPGTVAEDDFL 114
Query: 387 GPDAVHLLAI-------KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGAL 439
+ + LA EGN G D G A++D + +
Sbjct: 115 EQGSNNYLAAVYCSNKKTEGNSGFD---YYAGLAYIDVTTGNFFATSFPKTDFKEQFLKE 171
Query: 440 LMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS-----EVKKLV 494
+ +++PKE++ + Q +F A L P+M + D S K+L
Sbjct: 172 IGRINPKEILIQ--------QSIQNEFPALKQILSEFPSMMQNFYPDWSFNPDQAEKRLC 223
Query: 495 ------QLNGYFNGSSSP-------WSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR 541
L G+ + SP + LE + DI + + + + LDD R
Sbjct: 224 STFGTENLKGFLLNTDSPEVPPAGLLLQYLEEISGRDISHISGIKIYAESDFVSLDDSTR 283
Query: 542 -NGDILPYKVYRDCLRMDGQTLYLDSCV----TSSGKRLLRSWICHPLKDVEGINNRLDV 596
N ++L LR + + L V T+ G RLLR I +PL+ I+ RLD
Sbjct: 284 KNLELLT------NLRDNSPSYSLFESVNYTKTAMGTRLLRRRISYPLRSKNEIDKRLDK 337
Query: 597 VEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
V L K+ + ++ + L + D+ERL GR+
Sbjct: 338 VNSLFKDGKASAIIRETLSSILDIERLSGRI 368
>sp|B8CX98|MUTS_HALOH DNA mismatch repair protein MutS OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=mutS PE=3 SV=1
Length = 896
Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 168/292 (57%), Gaps = 38/292 (13%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
IS +DVL S A A+ R P R +N G + IKG HP G
Sbjct: 552 ISKLDVLTSLA------QNALERDYNRP-------RINNDGVIEIIKG-RHPVVEDMGKG 597
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
VPND L + + R +++TGPNM GKST +R L V++AQ+G FVP + + +
Sbjct: 598 AFVPNDTYLDLEEE----RFIIITGPNMSGKSTYMRQVALIVLMAQMGSFVPADKATIGI 653
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D + TG+STF+VE E A+++ AT++SL+ILDE+GRGTST+DG +IA+
Sbjct: 654 VDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNNATRNSLIILDEVGRGTSTYDGLSIAW 713
Query: 928 AVFRQL--VERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYS---KGDQE 982
AV + +RI R LFATHYH LT + + P + +NY+ + D++
Sbjct: 714 AVSEYINNPDRIGARTLFATHYHELT-QLENRPGI-------------KNYNVLVEEDED 759
Query: 983 LV-FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKS 1033
V FL+++ G ESYG++VA +AG+P +++ A ++K ES K+
Sbjct: 760 GVHFLHKIIPGKASESYGIEVAQLAGLPMEIIIRAQEILAELEKKGKESTKT 811
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 128/484 (26%), Positives = 210/484 (43%), Gaps = 107/484 (22%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+ K++ +QY ++K++Y D +LFF++G FYE++ DA+I +ELD +T G K
Sbjct: 1 MSKLTPMMQQYQSIKNKYKDAILFFRLGDFYEMFNDDAKIAARELDLALTARNKGGGEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + + KL+ +GYKV EQ+E +AK ++SR++V ++TP T ++
Sbjct: 61 PMAGVPCHSAESYIAKLLEKGYKVAICEQIEDPSEAKG-----LVSREVVRIITPGTIIE 115
Query: 384 GTIGPDAVHLLAIKEGN------CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
+L KE N C D+ GF++VD + +V + S
Sbjct: 116 N-------EMLKDKENNYLASAICYKDH----LGFSYVDISTGEFYVTQFSQKFSDKVWD 164
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
L ++ P+EVI +CKE ++ +F D + Q+N
Sbjct: 165 E-LDRIQPREVI-----ICKELEET-------------------ENFADKKK-----QMN 194
Query: 498 GYFNGSSSPWSKALENVMQHDI------GFS---------ALGGLISHLSRLMLDDVLRN 542
+N S KA N + GF A G +I+ L +
Sbjct: 195 FVYNYSRIEKVKAAYNFLLEHFKTNSLSGFGCEDKPAAILAAGEIINFLKDTQKRTLEHI 254
Query: 543 GDILPYKVYRDCLRMDGQTLY--------------------LDSCVTSSGKRLLRSWICH 582
I Y + D + +D T Y LD +TS G RL++ WI
Sbjct: 255 NRITTYNL-TDYMVLDSATRYNLELTSTIRGNKHKGSLLNVLDQTITSMGGRLIKKWINQ 313
Query: 583 PLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV-----KARVQAS--- 634
PL D I RLD VE L+ N ++ + ++L+ + DLER+LG+V AR A+
Sbjct: 314 PLIDRNKIETRLDAVEELVNNYLLLQEIREHLKGIYDLERILGKVSYGSANARDLAALKY 373
Query: 635 SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSD 694
S + LP I K + + K+F ++ + +DL L+ + S + +PP+
Sbjct: 374 SILKLPQIKKDLEQLNTKLFKNMHETFDPLIDLAGLLDR--------SIVDEPPVSVREG 425
Query: 695 GLDK 698
GL K
Sbjct: 426 GLIK 429
>sp|Q5L0E5|MUTS_GEOKA DNA mismatch repair protein MutS OS=Geobacillus kaustophilus (strain
HTA426) GN=mutS PE=3 SV=1
Length = 896
Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 176/328 (53%), Gaps = 38/328 (11%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + L+AE SI +E LF+ Q + I AI+ +DVL+SFA +
Sbjct: 488 PELKEKEALILEAEEKSIELEYELFVAIREQVKQYIPRLQTLAKAIAELDVLQSFATISD 547
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG-LPVPNDILLGEDSD 821
+ PQ V L I+G HP G + VPND + + +
Sbjct: 548 EYR------YVRPQFSTERV--------LVIQGGRHPVVEKVLGAQMYVPNDCYMNRERE 593
Query: 822 DCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881
LL+TGPNM GKST +R L ++AQ+GCFVP E VL + D +FTR+GA D +
Sbjct: 594 -----MLLITGPNMAGKSTYMRQVALTAVMAQIGCFVPAERAVLPIFDQVFTRIGAADDL 648
Query: 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941
G+STF+VE E + ATQ+SL++ DE+GRGTST+DG A+A A+ + + I +
Sbjct: 649 SAGQSTFMVEMLEARHAIAHATQNSLILFDEIGRGTSTYDGMALAQAIIEYIHDHIGAKT 708
Query: 942 LFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQ 1001
LF+THYH LT S P ++ H A A + N ++VFL+++ G +SYG+
Sbjct: 709 LFSTHYHELTALERSLPRLSNVH-ARAIEENG--------KVVFLHQIADGPADKSYGIH 759
Query: 1002 VAVMAGVPQKVVEAASHAALAMKKSIGE 1029
VA +AG+P ++E A ++K+ G+
Sbjct: 760 VAELAGLPASLIERARAILAELEKAAGK 787
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 161/387 (41%), Gaps = 85/387 (21%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCR--QVGISESG 332
+QY ++K+QY D LFF++G FYEL+ DA +EL+ +T G R G+
Sbjct: 3 QQYLHIKAQYPDAFLFFRLGDFYELFFDDAIKAAQELEITLTSRDGGDERVPMCGVPYHS 62
Query: 333 IDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDAV 391
+E+L+ +GYKV EQ+E + AK V+ R++V ++TP T ++G +
Sbjct: 63 AQGYIEQLIEKGYKVAICEQVEDPKTAKG-----VVRREVVQLITPGTLMEGKGLTEKEN 117
Query: 392 HLLAIKEGNCGP-DNGSVVYGFAFVDCAA-------LRVWVGTINDDASCAALGALLMQV 443
H LA P +G+ YG A+ D + L W N+ + A ++
Sbjct: 118 HYLA----ALTPFADGT--YGLAYADLSTGEVRLTLLSSWEEAANELHAVGAREIIVATD 171
Query: 444 SPKEVIYE-------------NRGLCKE--------AQKALRKFSAGSAALELTPAMAVT 482
S +E + E + LC E AQ+ LR+ AA L + T
Sbjct: 172 SGEEWVRELKERYGAAVSYEDDTSLCDEWNGVIGHVAQEKLRQ-----AAARLLHYLVRT 226
Query: 483 D--FLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL 540
LD + +L Q++ Y + S+L L+ V
Sbjct: 227 QKRRLDHLQPAELYQVDHYMK--------------------------MDRHSKLHLELV- 259
Query: 541 RNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYL 600
+ R R LD VT+ G RLL+ W+ PL D I RLD VE L
Sbjct: 260 --------ETVRSKGRKGSLLWLLDETVTAMGGRLLKQWLDRPLIDRREIERRLDFVETL 311
Query: 601 MKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + LR + D+ERL+GRV
Sbjct: 312 KTSYFERQELRDRLRGVYDIERLVGRV 338
>sp|Q8RA71|MUTS_THETN DNA mismatch repair protein MutS OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=mutS PE=3 SV=1
Length = 869
Score = 189 bits (480), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 166/294 (56%), Gaps = 28/294 (9%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ IDVL SFA A + +P++ + + + IK HP +
Sbjct: 554 IAIIDVLISFAEVAE--TNKYVKPIVDYEDR------------IVIKEGRHPVVETISDE 599
Query: 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSL 867
V NDI +G ++ +++TGPNM GKST +R L V++AQ+GCFVP + +
Sbjct: 600 GFVANDIDIGPENP-----IMIITGPNMAGKSTYMRQVALIVLMAQVGCFVPASYARIGI 654
Query: 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927
D IFTR+GA+D I G+STF+VE +E A++L AT SL+ILDE+GRGTST+DG +IA
Sbjct: 655 VDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSLIILDEVGRGTSTYDGMSIAQ 714
Query: 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLY 987
AV + E+I + LFATHYH LTK L+ ++ + + + + +++FL+
Sbjct: 715 AVIEYIHEKIKAKTLFATHYHELTK---------LEGKLRGVRNFNVSVEEREDDIIFLH 765
Query: 988 RLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFS 1041
++ G SYG+QV+ +AG+P ++E A A+++ + E S+F+
Sbjct: 766 KIVPGGSDRSYGIQVSKLAGLPYSIIERAKEILEALERDKAVKNELEEAVSQFA 819
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 174/393 (44%), Gaps = 69/393 (17%)
Query: 269 KMSAS--QKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
KMS + +QY +K +Y D +LFF++G FYE++ DAEI KEL+ +T G +
Sbjct: 3 KMSVTPMMEQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERA 62
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ D ++KLV +GYKV EQLE +AK ++ R +V + TP T
Sbjct: 63 PMAGVPYHAADFYIDKLVKKGYKVAICEQLEDPSKAKG-----LVKRDVVRIYTPGTI-- 115
Query: 384 GTIGPDAV------HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALG 437
I P+++ +L+++ DN YG VD ++ I + + +
Sbjct: 116 --INPESMDEKSNNYLVSVYREK---DN----YGICAVDVTTGELYATEIKNCKNGKRIY 166
Query: 438 ALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497
+ + SP E+I N K K ++ F + A+ A ++ +SE+
Sbjct: 167 DEIAKYSPSEII-SNEEFLKN-NKYIKVFKNNNCAVN---AYKPLNYEASSEL------- 214
Query: 498 GYFNGSSSPWSKALENVMQHDIGF--SALGGLISHLSRLM-------------------- 535
+ K +E + D F +LG L+S+L L
Sbjct: 215 -----IEKQFDKKVEELELEDKKFVIHSLGALLSYLKELQKTSLKHINKLTLYQDNSYMG 269
Query: 536 LD-DVLRNGDILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRL 594
LD + +RN +IL R+ + LD VT G RLL+ W+ PL D + I RL
Sbjct: 270 LDSNAIRNLEILESN--RNKSKKGSLLGVLDRTVTPMGGRLLKKWLEEPLIDKDEIEKRL 327
Query: 595 DVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
D VE L N + + + L K+ DLERL ++
Sbjct: 328 DAVEELFNNYRERIELKELLNKVYDLERLASKI 360
>sp|A4XL47|MUTS_CALS8 DNA mismatch repair protein MutS OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mutS
PE=3 SV=1
Length = 863
Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 182/346 (52%), Gaps = 47/346 (13%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG- 806
I+ ID L SFA A +P++ G + IK HP G
Sbjct: 540 IAIIDALCSFAHIAI--DNRYTKPIVYL------------GDRIYIKNGRHPVVEKMIGY 585
Query: 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPND L D + R L++TGPNM GKST +R L VI+AQ+GCFVP E +
Sbjct: 586 SNFVPNDTELDNDQN----RVLIITGPNMAGKSTYMRQVALIVIMAQMGCFVPAEEAQIG 641
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IF+R+GA+D I +G+STF+VE +E A++L+ AT SL+I DE+GRGTST+DG +IA
Sbjct: 642 IVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFDEVGRGTSTYDGLSIA 701
Query: 927 YAVFRQLVE--RINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELV 984
+AV + + +I + LFATHYH LT+ L+ K+ + + + ++
Sbjct: 702 WAVLEFVADKSKIGAKTLFATHYHELTE---------LEEKISGVKNYRVDVKEEGKNII 752
Query: 985 FLYRLTSGACPESYGLQVAVMAGVPQKVVEAASH-------------AALAMKKSIGESF 1031
FL ++ G C SYG+ VA +AG+P++V++ A A ++K I F
Sbjct: 753 FLRKIVRGGCDSSYGIHVARLAGIPEEVLQRAEQILKKLEEADINRKEAKRLRKEIKREF 812
Query: 1032 KSSEQRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFCLWHEL 1077
+EQ FS +E ++ I N+ + N A + L L HE+
Sbjct: 813 --TEQIEFFSYKKDEIIEKIENLDIL--NITPIQALNILSELKHEI 854
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 158/366 (43%), Gaps = 33/366 (9%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KC 323
+++++ +QY +K + D +LFF++G FYE++ DA I KEL+ +T G K
Sbjct: 1 MQELTPMMQQYMEIKQRVKDCILFFRLGDFYEMFFDDAIIASKELEIALTARDCGNNEKA 60
Query: 324 RQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ + KL+ +GYKV EQ+E + AK V+ R++ ++TP T +D
Sbjct: 61 PMCGVPYHSAHSYIAKLIEKGYKVAICEQVEDPKLAKG-----VVKREITRIITPGTFID 115
Query: 384 GTIGPDAVHLLAIKEGN--CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLM 441
K N C + FVD + ++ I +D + +
Sbjct: 116 ENFS---------KANNFICCVARVESDFALTFVDISTGEMYACLIEND--IQKMINEIS 164
Query: 442 QVSPKEVIYENRGLCKEAQKALRK-FSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYF 500
+ +P E++ + L E + +R+ +++ +E D +D ++ +N
Sbjct: 165 KYAPSEILISH--LDNELYEVIRENYNSFVQRIEFIEIDRCYDLIDKQ--MQITNINDKV 220
Query: 501 NGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLD-DVLRNGDILPYKVYRDCLRMDG 559
S L + + + + L +D RN ++ + R
Sbjct: 221 ALSVGNLLNYLVDTQKISFNYIKKFEFYRVQNYLQIDLSTKRNLELTESIIARS----KK 276
Query: 560 QTLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKL 617
+L+ LD TS G RL++ W+ PL DV IN RLD VE L N ++M + L +
Sbjct: 277 NSLFGILDQAKTSMGSRLIKKWLERPLIDVVEINRRLDAVEELYNNFPLLMQIEGLLEGI 336
Query: 618 PDLERL 623
D+ERL
Sbjct: 337 YDIERL 342
>sp|A7NPT5|MUTS_ROSCS DNA mismatch repair protein MutS OS=Roseiflexus castenholzii (strain
DSM 13941 / HLO8) GN=mutS PE=3 SV=1
Length = 1088
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 159/301 (52%), Gaps = 29/301 (9%)
Query: 719 VTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778
+ DL+ + + E + I+ IDV + A A G RP + ++
Sbjct: 721 LIDLERRAFARICETLAGAGVRLLRTARTIATIDVFAALAEAAV--RGRYVRPELYDDTR 778
Query: 779 NPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGK 838
L+I G HP +PNDI + ++ L+TGPNM GK
Sbjct: 779 ------------LRIIGGRHPVVEQTLDETFIPNDIEMDTETRQIC----LITGPNMSGK 822
Query: 839 STLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASV 898
ST+LR L ++AQ+G FVP + + + D IFTR+GA D I TG STF+VE TETA++
Sbjct: 823 STVLRQVALIALMAQIGSFVPADAAEIGVVDRIFTRIGAQDDIATGRSTFMVEMTETAAL 882
Query: 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQL--VERINCRLLFATHYHPLTKEFAS 956
L ++T SL+ILDE+GRGTST+DG AIA AV + R+ CR LFATHYH LT +
Sbjct: 883 LAQSTHRSLIILDEVGRGTSTYDGMAIAQAVIEYIHNEPRLGCRTLFATHYHELTDLERT 942
Query: 957 HPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
P + HMA ++ D +VFL+ L G SYG+ VA +AG+PQ V+ A
Sbjct: 943 LPRLKNYHMAA---------TEQDGRVVFLHELRPGGADRSYGIHVAELAGIPQPVIRRA 993
Query: 1017 S 1017
+
Sbjct: 994 T 994
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 91/435 (20%), Positives = 172/435 (39%), Gaps = 90/435 (20%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG------- 321
++ A +QY ++K+ + D +L +++G FYE ++ DA++ L+ +T
Sbjct: 21 ELHAWYRQYRSLKAAHPDAILLYRLGDFYETFDDDAKLVADLLEVTLTYKEFASQKGRDQ 80
Query: 322 --KCRQVGISESGIDDAVEKLVARGYKVGRIEQLETS-----------------EQAKAR 362
+C GI ++ V +LV GY+V EQ+ + EQ
Sbjct: 81 KQRCPMAGIPYHAVEGYVARLVGAGYRVAIAEQMTETPSSRTDTRPRSIFAAGIEQTALI 140
Query: 363 HTNSVISRKLVNVVTPSTTVDGTIGPDAV--HLLAIKEGNCGPDNGSVVYGFAFVDCAAL 420
+ ++ RK+V ++TP T ++ + P +L A+ D+G + G A+ D +
Sbjct: 141 GGHKMVERKVVRIITPGTIIESGMLPAERNNYLAALIA-----DHGRI--GLAYADLSTG 193
Query: 421 RVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA 480
+ + + L +++P E++ +R + L SA LE
Sbjct: 194 EFAAIEFSGERAAQQAQGELARLNPAEILVPDRADLR-----LPGLEPSSARLEQDLEFL 248
Query: 481 VTD----FLDASEVKKLVQLNG---YFNGSSSPWS------KALENVMQHDIGFSALGGL 527
+ L + + V+ + +G + WS + + + H G +L G
Sbjct: 249 TREERERVLPGERIARRVERENHARWAHGHVTAWSEQRWDLRNARDTLLHQFGVHSLAGF 308
Query: 528 --------------ISHLSRLMLDDVLRNGDILPYKVYR--DCLRMDGQTL--------- 562
I +R + N + +VY D + +D QT
Sbjct: 309 GLADRPLAIRAAGAIVQYARETQQGTVAN--LRAIRVYTPGDAMVLDPQTQRNLELLEGN 366
Query: 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ 612
LD T G RLLR WI PL D+ + R D V++ + ++ + V +
Sbjct: 367 SGTTRGSLIGVLDQTRTPMGARLLRRWISQPLCDLARLRARHDAVDHFVNDAILRASVRE 426
Query: 613 YLRKLPDLERLLGRV 627
LR++ D+ER++ R+
Sbjct: 427 TLRRVGDMERVVNRI 441
>sp|B8I2Q5|MUTS_CLOCE DNA mismatch repair protein MutS OS=Clostridium cellulolyticum
(strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=mutS
PE=3 SV=1
Length = 873
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 177/320 (55%), Gaps = 41/320 (12%)
Query: 712 PDYQNHDVTDLDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTAS 762
P+ + + T L AE I +E LF+E + +E + A++ IDVL S A A
Sbjct: 508 PELKEIEDTILGAEEKIIQLEYSLFVEIKEKIAEQLSRIKSTARALAEIDVLASLAEVAD 567
Query: 763 MSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA--LGENGGLPVPNDILLGEDS 820
P V + +++ + HP + + G VPND +L +
Sbjct: 568 REGYC-----------KPEVSLSDKIEIIEGR---HPVVEKMTDKSGF-VPNDTVLDMEE 612
Query: 821 DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR 880
D R ++TGPNM GKST +R T L V++AQ+G FVP + L D IFTR+GA+D
Sbjct: 613 D----RLAIITGPNMAGKSTYMRQTALIVLMAQIGSFVPAATAKIGLVDRIFTRVGASDD 668
Query: 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERIN 938
+ +G+STF+VE +E A++L AT+ SL++LDE+GRGTSTFDG +IA+AV +V E++
Sbjct: 669 LASGQSTFMVEMSEVANILINATKRSLLVLDEIGRGTSTFDGLSIAWAVIEYIVNKEQLG 728
Query: 939 CRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESY 998
CR LFATHYH LT+ P + ++ K E+ ++FL ++ G SY
Sbjct: 729 CRTLFATHYHELTELEGKLPGI--KNYCITVKEKGED-------VIFLRKIIRGGADGSY 779
Query: 999 GLQVAVMAGVPQKVVEAASH 1018
G+QVA +AGVPQ V++ A
Sbjct: 780 GIQVAKLAGVPQSVIDRAKE 799
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 178/385 (46%), Gaps = 66/385 (17%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISES--- 331
+QY ++K QY D +LFF++G FYE++ DAE+ +EL+ ITL+G R G+ E
Sbjct: 9 QQYLDIKEQYKDCILFFRLGDFYEMFFSDAELASRELE--ITLTG----RDCGLEERAPM 62
Query: 332 ------GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT 385
D+ + +LV++GYKV EQ+E AK ++ R +V VVTP T D T
Sbjct: 63 CGVPFHAADNYIARLVSKGYKVAICEQVEDPALAKG-----IVKRDVVKVVTPGTVTDIT 117
Query: 386 IGPDAV--HLLAI-KEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
+ + +L+++ K GN YG A VD + I + L + +
Sbjct: 118 MLDERKNNYLMSVYKNGN--------FYGLASVDITTGDFYATRITWGNTRGKLLDEIAK 169
Query: 443 VSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNG 502
P E+I N L + ++ ++ V+ F + S + +
Sbjct: 170 YLPSEIIVNNE---------LNSDNELTSEIKQRFNTYVSTFEETS-----FEYGNSMDI 215
Query: 503 SSSPWSKALENVMQHDIGFSALGGL-----------ISHLSRL--------MLDDVLRNG 543
++ + K N+ ++DI +A G L +SH+ + M+ D
Sbjct: 216 LANHFEKQTLNIQEYDIAVNASGALLKYLESTQKVNLSHIQKFNSYALEEYMILDASSRR 275
Query: 544 DILPYKVYRDCLRMDGQTLYLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKN 603
++ + R+ + LD +TS G RLLR WI PL + I+ RLD VE L KN
Sbjct: 276 NLELTETMREKSKKGSLLWVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLDAVEEL-KN 334
Query: 604 SEVVMVVA-QYLRKLPDLERLLGRV 627
+V V A + L+++ D+ERL+G+V
Sbjct: 335 KFMVRVEARELLKRVYDIERLMGKV 359
>sp|Q6AQ04|MUTS_DESPS DNA mismatch repair protein MutS OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=mutS PE=3 SV=1
Length = 879
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/282 (39%), Positives = 167/282 (59%), Gaps = 30/282 (10%)
Query: 738 ASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLW 797
+S++ H ++ +D S A + + HRP I +D+G L+I+
Sbjct: 552 SSRFLATAHQLALLDFYASAAEVSQQYN--YHRPEI----------RDDGS--LEIREGR 597
Query: 798 HP-FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856
HP G VPND+ L + ++ L ++TGPNM GKST+LR T L V++AQ+G
Sbjct: 598 HPVIERSLPAGKFVPNDVYLDQAENEIL----VITGPNMAGKSTVLRQTALIVLMAQMGY 653
Query: 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916
+VP + + + D IFTR+GA D + G+STF+VE +ETA++L AT SLVILDE+GRG
Sbjct: 654 YVPADSARIGVVDRIFTRVGAMDDLRRGQSTFMVEMSETANILNNATPRSLVILDEIGRG 713
Query: 917 TSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSE 974
TST+DG +IA+AV LV++ I + +FATHYH LT + + +Q+ + A +
Sbjct: 714 TSTYDGLSIAWAVTEHLVQKDGIGVKTMFATHYHELTD--LARRYARIQNYSIAVR---- 767
Query: 975 NYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+ + ++FL++L G SYG+QVA +AGVP +VVE A
Sbjct: 768 ---EWQKSVIFLHKLIKGGTSRSYGIQVAALAGVPAQVVERA 806
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 158/395 (40%), Gaps = 67/395 (16%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKIT----LSGVGKCR 324
K++ +QY+ +K Q+ +LF+++G FYE++ DA K L +T S +
Sbjct: 5 KITPMMQQYFKLKEQHPHTILFYRMGDFYEMFFEDAITASKILGITLTSRNKKSDSAQIP 64
Query: 325 QVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384
GI + + K+V G +V EQ+E A+ ++ R++V +VTP D
Sbjct: 65 MCGIPYHALQGYLAKMVEAGKRVAICEQVEDPSTAQG-----IVKREVVQIVTPGVVTDN 119
Query: 385 TIGPDAVHLLAIKEGNC------GPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
LL K N G +N YG +F+D V A +
Sbjct: 120 -------QLLDAKSNNFVTAISRGKNNR---YGLSFLDITTGEFIVADFAGSDGEADILD 169
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVT-------DFLDASEVK 491
L +++P E++ L A+ A L P + +T DF D S K
Sbjct: 170 QLTRLTPTELLVSEEELEDFAETI-------DLATTLIPGLCITPRPHHLFDF-DQSHEK 221
Query: 492 KL-----VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISH---LSRLMLDDVLRNG 543
L + L+G+ G + + + D I H LSRL LD +L+
Sbjct: 222 LLEHFAVISLDGF--GCETLVEGQIAAAILLDYIEETQKSAIHHIEKLSRLELDAILQID 279
Query: 544 DILPYKVYRDCLRMDGQTLY-----------LDSCVTSSGKRLLRSWICHPLKDVEGINN 592
D R L + QT+ LD T G R L+ I PL+D I
Sbjct: 280 D-----SSRRNLELT-QTIVGGNRSGSLLSVLDLTTTPMGARFLKQAILFPLQDRARILR 333
Query: 593 RLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRV 627
RL+ V Y NSE + + L ++ D+ERL R+
Sbjct: 334 RLNAVGYFFNNSEARHQIRELLDQVYDIERLNSRI 368
>sp|A9KG24|MUTS_COXBN DNA mismatch repair protein MutS OS=Coxiella burnetii (strain Dugway
5J108-111) GN=mutS PE=3 SV=1
Length = 859
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 168/318 (52%), Gaps = 28/318 (8%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E L++ IEK + AI+ +DVL + A A + N
Sbjct: 532 EKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERAD--------------TLNFNA 577
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
Q P++KI+ HP +PND L E R L++TGPNMGGKST +
Sbjct: 578 PQFCDYPIIKIEAGRHPIVENVMTDPFMPNDTHLDEKR-----RMLIITGPNMGGKSTYM 632
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R T L +LA +G FVP + L D IFTR+GA D + +G STF+VE TETA++L A
Sbjct: 633 RQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNA 692
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962
T++SLV++DE+GRGTSTFDG ++AYA L ++ LFATHY LT ++ P V
Sbjct: 693 TEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLPAVKN 752
Query: 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALA 1022
H+ + +++++FL+ L G +SYGLQVA +AG+P+ V++ A
Sbjct: 753 VHLDAV---------EHEEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEE 803
Query: 1023 MKKSIGESFKSSEQRSEF 1040
++ + + +Q F
Sbjct: 804 LENPVISETQQPQQNELF 821
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 162/379 (42%), Gaps = 58/379 (15%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV---GISES 331
+QY +K++Y D+L+F+++G FYEL+ DA+ K L+ +T G + G+
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 81
Query: 332 GIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTI---GP 388
+++ + KLV G V EQ+ +K ++R++ ++TP T D +
Sbjct: 82 AVENYLTKLVRLGESVVICEQIGDPATSKG-----PVAREVTRIITPGTVSDEALLDEHR 136
Query: 389 DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEV 448
D ++ +E + +G A +D + R + I S AL A + ++ P E+
Sbjct: 137 DNTLMVIHQEKDR--------FGIATLDITSGRFLIQEI---ISENALFAEIERIRPAEL 185
Query: 449 IY--ENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSP 506
+ EN +A R+ E A A+T + K L+G F + P
Sbjct: 186 LISEENSVHPLKADSIKRR-----PPWEFDHATALTLLCQQFQTKS---LDG-FGITHLP 236
Query: 507 WSKALENVMQHDIGFSALGGLISHL---------SRLMLD-DVLRNGDILPYKVYRDCLR 556
+ + + ++ L H+ L +D + RN +++
Sbjct: 237 LAITAAGCLLQYVNYTQKSAL-PHIHSIQAEQNEEALFIDANTRRNLELIT--------N 287
Query: 557 MDGQTLY-----LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA 611
+ G+ ++ LD T G RLLR WI PL+D + R + V L++ +
Sbjct: 288 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLEKRNYSEIY- 346
Query: 612 QYLRKLPDLERLLGRVKAR 630
+ LR + DLER++ R+ R
Sbjct: 347 ENLRHIGDLERIVARIALR 365
>sp|Q0UXL8|MSH3_PHANO DNA mismatch repair protein MSH3 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=MSH3 PE=3 SV=3
Length = 1119
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 142/238 (59%), Gaps = 10/238 (4%)
Query: 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850
L I G HP VPND+ L D+ R LL+TGPNMGGKS+ +R+ L I
Sbjct: 859 LDIVGGRHPMVEQLLLDAYVPNDVHLSGDAT----RALLVTGPNMGGKSSYVRSAALIAI 914
Query: 851 LAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVIL 910
+ Q+G +VP E L + D +FTR+GA D ++ GESTF+VE ETA +L+ AT SL+IL
Sbjct: 915 MGQIGSYVPAESAKLGMLDAVFTRMGALDNMLKGESTFMVELNETADILRSATSRSLIIL 974
Query: 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970
DELGRGTSTFDG AIA AV ++ + LF THY L + + L+++ +F+
Sbjct: 975 DELGRGTSTFDGVAIAEAVLDYVIRDVGALTLFITHYQHLAR-LQDRFNGELKNVHMSFE 1033
Query: 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIG 1028
G +E+VFLY + G SYGL VA +A VP+KV+E A + +++S+G
Sbjct: 1034 ERD-----GGKEVVFLYEVAEGTSHRSYGLNVARLAKVPEKVIETAEVKSSELEESMG 1086
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 161/419 (38%), Gaps = 67/419 (15%)
Query: 269 KMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKEL-----------DWKITL 317
K++ + QY ++K ++MD ++ +VG ++ + DA KEL D +
Sbjct: 217 KLTPMELQYLDIKRKHMDTVIVMEVGYKFKFFGEDARTASKELGIVCIPGKFRYDEHPSE 276
Query: 318 SGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSE-QAKARHTNSVISRKLVNVV 376
+ + + V++LV +KVG + QLET+ +A + N+ RKL N+
Sbjct: 277 AHYDRFASASFPVHRLQVHVKRLVKANHKVGVVRQLETAALKAAGNNRNTPFVRKLTNLY 336
Query: 377 TPSTTVDG-------TIGPDAV-HLLAIKEGNC---GPDNGSVVYGFAFVDCAALRVWVG 425
T T VD T G A +LL + E N G D V G V A +
Sbjct: 337 TKGTYVDDIEGLETPTAGAQATGYLLCVTETNAKGWGTDE-KVQVGLVAVQPATGDIIYD 395
Query: 426 TINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFL 485
D + + L+ ++P E + L K K + SA T +
Sbjct: 396 DFEDGFMRSEIETRLLHIAPAEFLIVG-DLSKATDKLIHHLSASK-----TNVFGDRSRV 449
Query: 486 DASEVKKLVQLNGYFNGSS-------------SPWSKALENVMQHDIGFSA-LGGLISHL 531
+ E K + Y + S+ S L+ V Q + L +I++L
Sbjct: 450 ERVEKPKTMAAQAYSHISNFYADKMKSSQEGGSEQGAILDKVHQLSEHVTICLSAMITYL 509
Query: 532 SRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------YLDSCVTSS 571
S L+ V R + ++G TL +D T
Sbjct: 510 SDYALEHVFDLTKYFQPFSARSYMLLNGNTLSSLEIYQNQTDYTSKGSLFWTMDRTKTRF 569
Query: 572 GKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMV--VAQYLRKLP-DLERLLGRV 627
G+RLLR W+ PL D E + R+ VE L + + V V L K+ DLE++L R+
Sbjct: 570 GQRLLRKWVGRPLIDKERLEERIAAVEELKEGEHTIAVDKVKFLLGKIKTDLEKVLIRI 628
>sp|Q02VS3|MUTS_LACLS DNA mismatch repair protein MutS OS=Lactococcus lactis subsp.
cremoris (strain SK11) GN=mutS PE=3 SV=1
Length = 840
Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 28/270 (10%)
Query: 748 ISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGG 807
I+ ID L+S +V A G + RP + G +++IKG H G
Sbjct: 534 IAEIDCLQSLSVVAE-KQGYI-RPTL-----------TEGSRIVEIKGGRHAVVEAVMGA 580
Query: 808 LP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS 866
VPNDI L E +D L+TGPNM GKST +R L VI+AQ+G FVP + L
Sbjct: 581 QEYVPNDIELPEQTD-----IQLITGPNMSGKSTYMRQFALTVIMAQIGSFVPAKTANLP 635
Query: 867 LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926
+ D IFTR+GA+D +++GESTF+VE +E +QKAT SL+I DELGRGT+T+DG A+A
Sbjct: 636 IFDAIFTRIGASDNLISGESTFMVEMSEANHAIQKATSRSLIIFDELGRGTATYDGMALA 695
Query: 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986
A+ + E I + LFATHYH LT H+ H+A ++ + + FL
Sbjct: 696 QAIIEYVHEYIGAKTLFATHYHELTDLDKELDHLDNVHVATLEQNGN---------VTFL 746
Query: 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016
+++T G +SYG+ VA +AG+PQ ++E A
Sbjct: 747 HKITDGPADKSYGIHVAKIAGLPQTLLERA 776
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 74/386 (19%)
Query: 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVG 327
+K+S +QY ++K Y D L F++G FYEL+ DA + L+ +TL+ K +
Sbjct: 3 EKISPGMQQYLDIKQDYPDAFLLFRMGDFYELFYEDAVNAAQILE--LTLTSRNKNSENP 60
Query: 328 ISESGI-----DDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTV 382
I +G+ + ++KLV GYKV EQ+E ++A ++ R + V+TP TT+
Sbjct: 61 IPMAGVPHHAATEYIDKLVDLGYKVAVAEQMEDPKKAVG-----IVKRAVTQVITPGTTI 115
Query: 383 DGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQ 442
D D L+AI D + Y +++D + V +++ A +G +
Sbjct: 116 DTANSVDNNFLVAI-------DFKAKRYALSYMDLSTGEFKVTELSE--FSAVVGG-IAS 165
Query: 443 VSPKEVIYENRGL-CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501
+ +E++ G EAQ + E + +++ + E L++L+G
Sbjct: 166 LKAREIVV---GFPLDEAQVKV---------FERQMNLLISEQFEIPE-NLLIELSGL-- 210
Query: 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQ- 560
ALEN A L++++ + D+ ++ Y++ +D L++D
Sbjct: 211 -------TALEN--------QAASKLLAYVKETQMRDLSHLQEVEHYEI-KDFLQLDFAT 254
Query: 561 -----------------TLY--LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM 601
TLY LD T+ G R+LRSWI PL I R+++V+ +
Sbjct: 255 KSSLELTANKRENKKHGTLYWLLDETKTAMGTRMLRSWIDRPLVSNSAIQKRMEIVQVFL 314
Query: 602 KNSEVVMVVAQYLRKLPDLERLLGRV 627
+ + + L+ + DLERL RV
Sbjct: 315 DHFFERSDLIEALKGVYDLERLASRV 340
>sp|A6W1Q6|MUTS_MARMS DNA mismatch repair protein MutS OS=Marinomonas sp. (strain MWYL1)
GN=mutS PE=3 SV=1
Length = 883
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 170/308 (55%), Gaps = 41/308 (13%)
Query: 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAV 782
+ E L+E E + A++ +DVL +FA A+ S P+ N
Sbjct: 529 EKELYEALLEQLNEILGELQTTSQALAQLDVLNNFAERANALS------FTCPELHN--- 579
Query: 783 RQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLL 842
GG ++I G HP VPND+ L + L++TGPNMGGKST +
Sbjct: 580 ---RGG--IQIVGGRHPVVESVISEPFVPNDLDLNDKRS-----LLMITGPNMGGKSTYM 629
Query: 843 RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902
R L +LA GCFVP E +S+ D IFTR+G++D + G STF+VE TETA++L A
Sbjct: 630 RQIALITLLAHTGCFVPAESASISVVDRIFTRMGSSDDLAGGRSTFMVEMTETANILNNA 689
Query: 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK-----EFASH 957
+++SLV++DE+GRGTSTFDG ++A+A L ++ C +LFATHY LT E A++
Sbjct: 690 SKNSLVLMDEVGRGTSTFDGLSLAWAAVDYLANKLKCYVLFATHYFELTTLADQLENAAN 749
Query: 958 PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAAS 1017
H+T ++ + E+VFL+++ G +SYGLQVA +AGVP+ V+
Sbjct: 750 VHLT--------------ATEYEDEIVFLHKVHEGPASQSYGLQVAQLAGVPRDVI---G 792
Query: 1018 HAALAMKK 1025
HA +K+
Sbjct: 793 HAKQKLKE 800
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 176/375 (46%), Gaps = 44/375 (11%)
Query: 275 KQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGID 334
+QY+ +KSQ+ + LLF+++G FYEL+ DA+ + LD ITL+ G + I +GI
Sbjct: 14 RQYFGLKSQHPNQLLFYRMGDFYELFYDDAKRASRLLD--ITLTARGHSGGIPIPMAGIP 71
Query: 335 -DAVEKLVARGYKVGRIEQLETSEQAKARHTNS-VISRKLVNVVTPSTTVDGTIGPDAVH 392
A E +AR ++G E + +EQ T+ + R++ +VTP T D +
Sbjct: 72 YHAAENYIARLVRMG--ESVVVAEQTGDPATSKGPVERQIARIVTPGTISDEAFLEEKRE 129
Query: 393 LLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYEN 452
L + + G ++GF+++D A+ R + ++ AL + L ++SP+E++
Sbjct: 130 NLLLSLAHQS-RKGLDIFGFSYLDMASGRFCLFEVD---GHEALSSELQRLSPREILISE 185
Query: 453 RGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ------LNGYFNGSSSP 506
+ K + S EL P F S ++L+Q L+G+ + +
Sbjct: 186 DFPARATLKLEKGIS------ELGP----WHFDYESSYRQLIQQFSTKDLSGFGCEAMTA 235
Query: 507 WSKALENVMQH--DIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMD------ 558
+ ++Q+ D SAL H+ +M++ ++ +L R L +D
Sbjct: 236 AIASAGALLQYAKDTQRSAL----PHIQSIMVEH--KDDSVLIDGATRRNLEIDINLTGG 289
Query: 559 -GQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLR 615
TL LD C T G RLL+ W+ P++D+ I R VV L +N A L+
Sbjct: 290 TSNTLVEVLDKCSTPMGSRLLKRWLHTPIRDLNEIQARQQVVAELQQNQSYNAFEAP-LK 348
Query: 616 KLPDLERLLGRVKAR 630
K+ DLER+L RV R
Sbjct: 349 KVGDLERILSRVALR 363
>sp|Q8CXG6|MUTS_OCEIH DNA mismatch repair protein MutS OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=mutS PE=3
SV=1
Length = 867
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/306 (36%), Positives = 163/306 (53%), Gaps = 39/306 (12%)
Query: 722 LDAETLSILIE--LFIEKASQWSEVI-------HAISCIDVLRSFAVTASMSSGAMHRPL 772
L+AE S+ +E LFI+ Q E I H IS +DVL+SFA +
Sbjct: 506 LEAEEKSVELEYDLFIQIRDQIKEEIPLIQQLAHIISQMDVLQSFATVSE---------- 555
Query: 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALG-ENGGLPVPNDILLGEDSDDCLPRTLLLT 831
N VR D L++ HP G VPND++ + + LL+T
Sbjct: 556 -----SNNYVRPDFNDEQLQVTKGRHPVVEQVMKDGTFVPNDVVFDKSQN-----MLLIT 605
Query: 832 GPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVE 891
GPNM GKST +R L I+ Q+GCF+P E L + D IFTR+GA D +++G+STF+VE
Sbjct: 606 GPNMSGKSTYMRQVALTSIMGQIGCFIPAEQATLCVFDQIFTRIGAADDLVSGQSTFMVE 665
Query: 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951
E + AT SL++LDE+GRGTST+DG A+A A+ + I + LF+THYH LT
Sbjct: 666 MLEARHAISNATDRSLILLDEIGRGTSTYDGMALAQAIVEYIHHNIAAKTLFSTHYHELT 725
Query: 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQK 1011
S H+ H+ + + +VFL+++ GA +SYG+ VA +A +P +
Sbjct: 726 ALEDSLHHLKNIHVRA---------EEHEGNVVFLHQIKEGAADQSYGIHVAKLADLPNE 776
Query: 1012 VVEAAS 1017
++E AS
Sbjct: 777 LIERAS 782
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 161/388 (41%), Gaps = 69/388 (17%)
Query: 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQV 326
+ K++ +QY +K++Y D LF+++G FYEL+ DA +EL+ +T GK +
Sbjct: 1 MAKLTPMMEQYIQIKNEYKDAFLFYRLGDFYELFYEDATRAAQELEITLTKRAGGKGDPI 60
Query: 327 ---GISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVD 383
G+ ++ ++ L+ RGYKV EQ+E + AK V+ R++V ++TP T ++
Sbjct: 61 PMCGVPYHSAENYIKTLIDRGYKVAICEQVEDPKTAKG-----VVKREVVQMITPGTVME 115
Query: 384 GTIGPDAVHLLAIKEGN-----CGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGA 438
T+ D E N +GS Y + D + + IND A +
Sbjct: 116 STMLTDG-------ENNYIGSLSHFQDGS--YVIVYNDLSTGENRLAFINDGWD-AVIHE 165
Query: 439 LLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNG 498
Q + VI N L +E Q L++ L ++ D EV
Sbjct: 166 FYNQPIKEIVISSN--LPEELQIQLKE--------RLNVTLSYQD-----EVT------- 203
Query: 499 YFNGSSSPWSKAL--ENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLR 556
FN S+ L E +M+ FS L I + L L+ +++ K Y
Sbjct: 204 -FNAEFRELSENLNDERLMK---AFSRLLNYIQTTQKRSLHH-LQKAEVIELKKYMSLDM 258
Query: 557 MDGQTLYLDSCV-----------------TSSGKRLLRSWICHPLKDVEGINNRLDVVEY 599
+ L L + T+ G R L+ W+ PL + IN RL+VV+
Sbjct: 259 YSKRNLELTETIMKKSKHGSLLWVLDKTVTAMGARTLKKWLERPLLSKQKINERLEVVQG 318
Query: 600 LMKNSEVVMVVAQYLRKLPDLERLLGRV 627
+ L+ + DLERL GR+
Sbjct: 319 FYDGFMERESLRDLLKSVYDLERLSGRI 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,850,291
Number of Sequences: 539616
Number of extensions: 16867291
Number of successful extensions: 48679
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 44383
Number of HSP's gapped (non-prelim): 2229
length of query: 1085
length of database: 191,569,459
effective HSP length: 128
effective length of query: 957
effective length of database: 122,498,611
effective search space: 117231170727
effective search space used: 117231170727
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)