Query 040956
Match_columns 1085
No_of_seqs 571 out of 4078
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217 Mismatch repair ATPase 100.0 3E-139 7E-144 1237.1 49.1 761 229-1027 207-1093(1125)
2 COG0249 MutS Mismatch repair A 100.0 1E-123 3E-128 1146.1 63.3 700 266-1027 2-800 (843)
3 TIGR01070 mutS1 DNA mismatch r 100.0 3E-121 6E-126 1137.6 64.8 685 270-1026 1-784 (840)
4 PRK05399 DNA mismatch repair p 100.0 2E-120 4E-125 1136.5 69.3 697 267-1026 5-799 (854)
5 KOG0218 Mismatch repair MSH3 [ 100.0 1E-110 3E-115 957.2 46.7 730 268-1027 160-1031(1070)
6 KOG0219 Mismatch repair ATPase 100.0 8.5E-76 1.8E-80 685.2 40.2 707 266-1029 8-840 (902)
7 KOG0220 Mismatch repair ATPase 100.0 3.3E-63 7.2E-68 571.3 36.3 643 392-1082 105-866 (867)
8 KOG0221 Mismatch repair ATPase 100.0 7E-55 1.5E-59 494.1 32.6 475 517-1026 193-796 (849)
9 PRK00409 recombination and DNA 100.0 3.9E-52 8.6E-57 516.0 33.8 272 724-1029 248-520 (782)
10 PF00488 MutS_V: MutS domain V 100.0 2.5E-49 5.4E-54 429.3 17.5 233 768-1025 1-234 (235)
11 TIGR01069 mutS2 MutS2 family p 100.0 1E-47 2.2E-52 475.5 33.5 274 724-1031 243-517 (771)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 2.4E-45 5.2E-50 393.4 17.6 217 793-1016 2-218 (218)
13 cd03287 ABC_MSH3_euk MutS3 hom 100.0 1.6E-43 3.4E-48 380.4 17.4 221 791-1016 1-222 (222)
14 cd03285 ABC_MSH2_euk MutS2 hom 100.0 1.3E-42 2.8E-47 374.2 19.3 220 793-1023 2-221 (222)
15 cd03284 ABC_MutS1 MutS1 homolo 100.0 9.8E-40 2.1E-44 350.6 18.6 214 792-1019 1-215 (216)
16 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.7E-38 3.8E-43 340.2 17.8 209 792-1008 1-213 (213)
17 cd03282 ABC_MSH4_euk MutS4 hom 100.0 2.8E-38 6E-43 336.3 17.4 201 793-1007 2-203 (204)
18 smart00534 MUTSac ATPase domai 100.0 3.6E-36 7.7E-41 315.6 16.3 184 827-1019 1-184 (185)
19 cd03283 ABC_MutS-like MutS-lik 100.0 6.7E-35 1.4E-39 309.4 16.7 197 792-1008 1-199 (199)
20 cd03243 ABC_MutS_homologs The 100.0 2.8E-33 6.1E-38 297.5 15.7 201 792-1008 1-202 (202)
21 cd03280 ABC_MutS2 MutS2 homolo 100.0 5.1E-33 1.1E-37 295.2 15.4 198 793-1008 2-200 (200)
22 PF01624 MutS_I: MutS domain I 100.0 1.3E-31 2.7E-36 259.4 10.8 109 271-384 1-112 (113)
23 COG1193 Mismatch repair ATPase 100.0 1.3E-29 2.7E-34 309.6 26.7 266 724-1027 240-506 (753)
24 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 1.5E-20 3.2E-25 203.7 13.6 167 789-969 3-220 (254)
25 cd03227 ABC_Class2 ABC-type Cl 99.8 3.2E-20 6.9E-25 190.9 12.6 134 793-954 2-147 (162)
26 smart00533 MUTSd DNA-binding d 99.8 3.9E-18 8.5E-23 192.0 21.0 68 563-630 7-74 (308)
27 COG1116 TauB ABC-type nitrate/ 99.8 3.4E-18 7.3E-23 183.4 13.4 160 789-961 2-204 (248)
28 COG1131 CcmA ABC-type multidru 99.8 4.5E-18 9.8E-23 191.1 14.6 161 789-962 3-211 (293)
29 COG1120 FepC ABC-type cobalami 99.8 4.2E-18 9E-23 185.6 13.8 159 790-960 2-211 (258)
30 COG1126 GlnQ ABC-type polar am 99.8 9.3E-18 2E-22 175.5 14.8 157 790-960 2-208 (240)
31 COG4152 ABC-type uncharacteriz 99.7 8.2E-18 1.8E-22 177.9 12.9 162 790-963 2-205 (300)
32 PRK13537 nodulation ABC transp 99.7 2.2E-17 4.7E-22 186.8 14.6 160 789-962 6-212 (306)
33 COG1127 Ttg2A ABC-type transpo 99.7 3.2E-17 6.9E-22 173.9 13.1 160 789-961 7-219 (263)
34 PRK13536 nodulation factor exp 99.7 3.2E-17 6.9E-22 187.9 13.9 160 789-962 40-246 (340)
35 COG1136 SalX ABC-type antimicr 99.7 1.4E-16 3E-21 170.7 14.0 157 791-956 2-211 (226)
36 PRK11247 ssuB aliphatic sulfon 99.7 1.6E-16 3.5E-21 175.5 15.0 158 789-959 11-205 (257)
37 TIGR01288 nodI ATP-binding ABC 99.7 1.3E-16 2.7E-21 180.4 13.9 159 789-961 3-208 (303)
38 cd03265 ABC_DrrA DrrA is the A 99.7 1.3E-16 2.8E-21 171.8 13.2 155 791-958 1-202 (220)
39 cd03259 ABC_Carb_Solutes_like 99.7 1.3E-16 2.8E-21 170.8 13.0 154 792-958 2-201 (213)
40 PF05192 MutS_III: MutS domain 99.7 8.7E-16 1.9E-20 162.3 18.7 175 563-759 25-204 (204)
41 cd03293 ABC_NrtD_SsuB_transpor 99.7 1.7E-16 3.6E-21 170.9 13.4 160 792-960 2-204 (220)
42 cd03261 ABC_Org_Solvent_Resist 99.7 1.7E-16 3.8E-21 172.5 13.6 156 792-960 2-209 (235)
43 COG0411 LivG ABC-type branched 99.7 1.1E-16 2.3E-21 170.7 11.4 162 789-962 3-224 (250)
44 TIGR00960 3a0501s02 Type II (G 99.7 2.1E-16 4.6E-21 169.6 13.6 156 791-958 2-208 (216)
45 TIGR02315 ABC_phnC phosphonate 99.7 2.7E-16 5.9E-21 171.7 14.4 156 791-958 2-216 (243)
46 TIGR02673 FtsE cell division A 99.7 2.4E-16 5.3E-21 168.7 13.7 155 791-958 2-207 (214)
47 cd03215 ABC_Carb_Monos_II This 99.7 3.2E-16 7E-21 164.1 14.3 144 789-958 3-174 (182)
48 cd03258 ABC_MetN_methionine_tr 99.7 2.6E-16 5.6E-21 170.8 13.8 157 791-960 2-213 (233)
49 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 2.5E-16 5.3E-21 169.2 13.3 157 792-958 2-210 (218)
50 cd03226 ABC_cobalt_CbiO_domain 99.7 2.6E-16 5.5E-21 167.7 13.1 142 808-958 13-196 (205)
51 cd03301 ABC_MalK_N The N-termi 99.7 2.2E-16 4.7E-21 169.0 12.6 154 792-958 2-201 (213)
52 cd03268 ABC_BcrA_bacitracin_re 99.7 2.7E-16 5.9E-21 167.8 13.1 154 791-958 1-196 (208)
53 COG1125 OpuBA ABC-type proline 99.7 3.1E-16 6.8E-21 167.0 13.3 159 791-962 2-210 (309)
54 COG4555 NatA ABC-type Na+ tran 99.7 8.7E-17 1.9E-21 166.1 8.8 157 791-960 2-205 (245)
55 cd03225 ABC_cobalt_CbiO_domain 99.7 3.1E-16 6.6E-21 167.6 13.1 142 808-958 14-204 (211)
56 cd03266 ABC_NatA_sodium_export 99.7 3.1E-16 6.8E-21 168.4 13.2 154 791-958 2-206 (218)
57 cd03230 ABC_DR_subfamily_A Thi 99.7 3.8E-16 8.3E-21 162.2 13.4 144 792-958 2-165 (173)
58 PRK11629 lolD lipoprotein tran 99.7 5.6E-16 1.2E-20 168.4 15.2 158 789-955 4-213 (233)
59 PRK11264 putative amino-acid A 99.7 5.7E-16 1.2E-20 169.9 15.3 157 790-960 3-216 (250)
60 COG1118 CysA ABC-type sulfate/ 99.7 2.4E-16 5.1E-21 172.1 12.0 167 791-970 3-220 (345)
61 cd03262 ABC_HisP_GlnQ_permease 99.7 4.6E-16 1E-20 166.4 14.0 153 792-958 2-205 (213)
62 PRK11248 tauB taurine transpor 99.7 3E-16 6.5E-21 173.1 12.9 158 791-961 2-202 (255)
63 cd03214 ABC_Iron-Siderophores_ 99.7 3.4E-16 7.4E-21 163.6 12.5 154 793-959 2-169 (180)
64 PRK09544 znuC high-affinity zi 99.7 5.2E-16 1.1E-20 170.9 14.5 160 789-961 3-194 (251)
65 cd03235 ABC_Metallic_Cations A 99.7 4.2E-16 9.2E-21 166.9 13.5 154 793-960 2-204 (213)
66 cd03269 ABC_putative_ATPase Th 99.7 3.3E-16 7E-21 167.4 12.4 153 792-958 2-198 (210)
67 cd03296 ABC_CysA_sulfate_impor 99.7 4.6E-16 9.9E-21 169.7 13.8 157 790-959 2-208 (239)
68 TIGR03522 GldA_ABC_ATP gliding 99.7 2.8E-16 6.2E-21 177.4 12.6 158 790-962 2-206 (301)
69 PRK11432 fbpC ferric transport 99.7 5E-16 1.1E-20 178.7 14.7 161 789-962 5-211 (351)
70 TIGR03265 PhnT2 putative 2-ami 99.7 4.6E-16 9.9E-21 179.2 14.3 162 789-963 3-210 (353)
71 cd03256 ABC_PhnC_transporter A 99.7 5.2E-16 1.1E-20 169.1 13.9 156 792-960 2-217 (241)
72 cd03219 ABC_Mj1267_LivG_branch 99.7 4.6E-16 1E-20 169.1 13.4 155 792-960 2-215 (236)
73 COG3842 PotA ABC-type spermidi 99.7 2.9E-16 6.2E-21 178.2 12.1 167 789-968 4-217 (352)
74 PRK10247 putative ABC transpor 99.7 9.6E-16 2.1E-20 165.9 15.8 157 789-959 6-208 (225)
75 cd03218 ABC_YhbG The ABC trans 99.7 4.5E-16 9.9E-21 168.7 13.2 154 792-959 2-204 (232)
76 PRK11831 putative ABC transpor 99.7 5.6E-16 1.2E-20 172.2 14.2 157 789-958 6-214 (269)
77 PRK11000 maltose/maltodextrin 99.7 5E-16 1.1E-20 180.1 14.1 160 790-962 3-208 (369)
78 PRK13543 cytochrome c biogenes 99.7 6.9E-16 1.5E-20 165.7 14.2 157 788-958 9-207 (214)
79 TIGR01188 drrA daunorubicin re 99.7 3.8E-16 8.2E-21 176.4 12.6 146 807-961 5-197 (302)
80 PRK09536 btuD corrinoid ABC tr 99.7 5.3E-16 1.1E-20 181.0 14.0 159 789-961 2-212 (402)
81 PRK10575 iron-hydroxamate tran 99.7 8E-16 1.7E-20 170.6 14.6 158 789-959 10-219 (265)
82 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 6.2E-16 1.3E-20 168.4 13.5 154 791-958 2-202 (236)
83 cd03216 ABC_Carb_Monos_I This 99.7 4.4E-16 9.6E-21 160.4 11.6 150 791-958 1-152 (163)
84 PRK11153 metN DL-methionine tr 99.7 6.4E-16 1.4E-20 177.6 14.0 162 791-961 2-214 (343)
85 cd03292 ABC_FtsE_transporter F 99.7 8.6E-16 1.9E-20 164.4 14.1 154 792-958 2-206 (214)
86 PRK11650 ugpC glycerol-3-phosp 99.7 1.1E-15 2.3E-20 176.4 15.9 161 790-962 3-209 (356)
87 PRK13647 cbiO cobalt transport 99.7 7.3E-16 1.6E-20 171.8 13.9 160 789-961 3-211 (274)
88 PRK13637 cbiO cobalt transport 99.7 1.1E-15 2.4E-20 171.4 15.4 162 791-960 3-217 (287)
89 PRK13638 cbiO cobalt transport 99.7 6.7E-16 1.4E-20 171.7 13.5 156 791-960 2-208 (271)
90 PRK09452 potA putrescine/sperm 99.7 8.5E-16 1.8E-20 178.1 14.7 161 789-962 13-219 (375)
91 TIGR03258 PhnT 2-aminoethylpho 99.6 6.2E-16 1.4E-20 178.5 13.4 160 790-962 5-213 (362)
92 PRK09984 phosphonate/organopho 99.6 1.1E-15 2.4E-20 169.0 14.8 158 789-959 3-224 (262)
93 cd03213 ABCG_EPDR ABCG transpo 99.6 1.3E-15 2.8E-20 161.3 14.5 156 789-958 2-182 (194)
94 PRK10851 sulfate/thiosulfate t 99.6 9.1E-16 2E-20 176.8 14.4 160 790-962 2-211 (353)
95 cd03246 ABCC_Protease_Secretio 99.6 1.1E-15 2.3E-20 158.9 13.4 142 792-957 2-164 (173)
96 PRK11300 livG leucine/isoleuci 99.6 1.3E-15 2.8E-20 167.7 14.6 158 789-958 4-224 (255)
97 PRK10895 lipopolysaccharide AB 99.6 1.1E-15 2.5E-20 166.7 14.1 155 790-958 3-207 (241)
98 PRK13652 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 170.0 14.8 159 790-960 3-210 (277)
99 TIGR02314 ABC_MetN D-methionin 99.6 9.5E-16 2.1E-20 175.7 14.0 162 791-961 2-214 (343)
100 TIGR03410 urea_trans_UrtE urea 99.6 9.5E-16 2.1E-20 166.1 13.3 155 792-959 2-203 (230)
101 PRK14250 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 165.8 15.1 157 790-959 3-203 (241)
102 COG3839 MalK ABC-type sugar tr 99.6 8.5E-16 1.8E-20 173.5 13.2 159 790-962 3-208 (338)
103 PRK11614 livF leucine/isoleuci 99.6 7.6E-16 1.6E-20 167.7 12.4 157 789-959 4-208 (237)
104 PRK10253 iron-enterobactin tra 99.6 1.4E-15 3E-20 168.7 14.7 157 789-958 6-214 (265)
105 cd03224 ABC_TM1139_LivF_branch 99.6 7.4E-16 1.6E-20 165.8 12.1 153 792-958 2-202 (222)
106 COG2884 FtsE Predicted ATPase 99.6 1.5E-15 3.3E-20 155.8 13.5 154 791-957 2-206 (223)
107 cd03263 ABC_subfamily_A The AB 99.6 8.3E-16 1.8E-20 165.3 12.4 156 791-959 1-203 (220)
108 cd03257 ABC_NikE_OppD_transpor 99.6 1.9E-15 4E-20 163.3 15.2 159 791-958 2-216 (228)
109 PRK09493 glnQ glutamine ABC tr 99.6 1.4E-15 3.1E-20 165.9 14.3 156 791-960 2-208 (240)
110 PRK10584 putative ABC transpor 99.6 1.5E-15 3.2E-20 164.4 14.1 159 789-957 5-215 (228)
111 cd03232 ABC_PDR_domain2 The pl 99.6 1.5E-15 3.2E-20 160.5 13.7 155 789-958 2-179 (192)
112 cd03295 ABC_OpuCA_Osmoprotecti 99.6 1.4E-15 3.1E-20 166.2 14.0 155 792-959 2-207 (242)
113 cd03228 ABCC_MRP_Like The MRP 99.6 1.2E-15 2.5E-20 158.3 12.6 141 792-957 2-163 (171)
114 COG1119 ModF ABC-type molybden 99.6 1.2E-15 2.7E-20 162.7 12.9 154 788-954 29-239 (257)
115 TIGR02211 LolD_lipo_ex lipopro 99.6 1.4E-15 3E-20 163.7 13.7 154 791-953 2-207 (221)
116 PRK13651 cobalt transporter AT 99.6 2.1E-15 4.5E-20 170.7 15.5 162 790-960 2-237 (305)
117 PRK13646 cbiO cobalt transport 99.6 2E-15 4.2E-20 169.4 15.1 162 791-960 3-218 (286)
118 PRK11607 potG putrescine trans 99.6 1.5E-15 3.2E-20 176.3 14.5 161 789-962 18-224 (377)
119 PRK14268 phosphate ABC transpo 99.6 2.3E-15 5E-20 166.2 15.4 157 789-960 11-225 (258)
120 cd03229 ABC_Class3 This class 99.6 8.8E-16 1.9E-20 160.2 11.4 154 792-958 2-171 (178)
121 PRK13636 cbiO cobalt transport 99.6 2.2E-15 4.7E-20 168.8 15.3 160 789-960 4-214 (283)
122 PRK10908 cell division protein 99.6 1.7E-15 3.6E-20 163.4 13.9 155 791-958 2-207 (222)
123 PRK13538 cytochrome c biogenes 99.6 1.5E-15 3.2E-20 161.9 13.2 152 791-956 2-197 (204)
124 TIGR03411 urea_trans_UrtD urea 99.6 2.3E-15 4.9E-20 164.4 14.9 155 790-959 2-213 (242)
125 COG1122 CbiO ABC-type cobalt t 99.6 1.1E-15 2.4E-20 166.0 12.2 160 789-960 2-211 (235)
126 cd03260 ABC_PstB_phosphate_tra 99.6 1.8E-15 3.8E-20 163.7 13.6 153 792-959 2-211 (227)
127 PRK10419 nikE nickel transport 99.6 3.6E-15 7.9E-20 165.7 16.4 164 789-960 2-224 (268)
128 PRK13635 cbiO cobalt transport 99.6 1.7E-15 3.7E-20 169.3 13.7 158 789-958 4-210 (279)
129 PRK10619 histidine/lysine/argi 99.6 2.3E-15 5E-20 166.1 14.5 157 789-959 4-223 (257)
130 PRK13631 cbiO cobalt transport 99.6 4.1E-15 8.8E-20 169.3 16.8 165 788-961 19-249 (320)
131 PRK11231 fecE iron-dicitrate t 99.6 2.5E-15 5.3E-20 165.6 14.6 156 790-959 2-209 (255)
132 PRK13634 cbiO cobalt transport 99.6 2.5E-15 5.4E-20 168.9 14.9 162 791-960 3-218 (290)
133 PRK14242 phosphate transporter 99.6 4.1E-15 9E-20 163.5 16.2 155 789-958 5-218 (253)
134 cd03231 ABC_CcmA_heme_exporter 99.6 2.1E-15 4.5E-20 160.5 13.3 153 791-957 1-194 (201)
135 TIGR00968 3a0106s01 sulfate AB 99.6 1.9E-15 4E-20 164.9 13.3 155 792-959 2-202 (237)
136 PRK13641 cbiO cobalt transport 99.6 2.9E-15 6.3E-20 168.1 15.2 162 790-960 2-217 (287)
137 cd03217 ABC_FeS_Assembly ABC-t 99.6 2.6E-15 5.6E-20 159.7 13.9 150 792-960 2-177 (200)
138 TIGR02769 nickel_nikE nickel i 99.6 2.5E-15 5.5E-20 166.6 14.4 161 790-958 2-221 (265)
139 PRK13648 cbiO cobalt transport 99.6 2.4E-15 5.1E-20 167.2 14.2 158 789-958 6-212 (269)
140 PRK13548 hmuV hemin importer A 99.6 2.2E-15 4.8E-20 166.5 13.8 156 790-958 2-211 (258)
141 PRK15112 antimicrobial peptide 99.6 2.5E-15 5.3E-20 166.9 14.2 163 789-959 3-221 (267)
142 PRK11124 artP arginine transpo 99.6 3.2E-15 7E-20 163.3 14.9 155 790-958 2-211 (242)
143 TIGR03005 ectoine_ehuA ectoine 99.6 2.6E-15 5.7E-20 165.1 14.3 155 792-959 2-218 (252)
144 COG3638 ABC-type phosphate/pho 99.6 1.5E-15 3.3E-20 160.9 11.7 158 789-958 2-218 (258)
145 PRK15079 oligopeptide ABC tran 99.6 4E-15 8.6E-20 170.1 16.2 166 788-961 6-235 (331)
146 TIGR03740 galliderm_ABC gallid 99.6 2.3E-15 5.1E-20 162.4 13.4 154 792-959 2-195 (223)
147 PRK14275 phosphate ABC transpo 99.6 4.1E-15 8.9E-20 166.8 15.7 158 787-959 36-252 (286)
148 TIGR01978 sufC FeS assembly AT 99.6 3.3E-15 7.2E-20 163.0 14.5 156 791-959 1-216 (243)
149 PRK13632 cbiO cobalt transport 99.6 2.5E-15 5.4E-20 167.2 13.8 158 789-958 6-212 (271)
150 PRK14259 phosphate ABC transpo 99.6 3.9E-15 8.5E-20 165.5 15.3 158 789-961 12-226 (269)
151 PRK14248 phosphate ABC transpo 99.6 5.4E-15 1.2E-19 164.2 16.3 157 789-960 20-235 (268)
152 PRK14245 phosphate ABC transpo 99.6 4.2E-15 9.1E-20 163.3 15.0 157 789-960 2-217 (250)
153 PRK13643 cbiO cobalt transport 99.6 4.2E-15 9.1E-20 166.9 15.2 161 791-960 2-216 (288)
154 cd03264 ABC_drug_resistance_li 99.6 2.7E-15 5.8E-20 160.5 13.0 151 792-958 2-199 (211)
155 PRK14273 phosphate ABC transpo 99.6 4.6E-15 1E-19 163.3 15.1 157 789-960 6-221 (254)
156 PRK13540 cytochrome c biogenes 99.6 2.8E-15 6E-20 159.3 12.8 149 791-953 2-192 (200)
157 PRK13633 cobalt transporter AT 99.6 3.7E-15 8.1E-20 166.6 14.4 161 789-958 3-214 (280)
158 PRK15439 autoinducer 2 ABC tra 99.6 3.1E-15 6.8E-20 180.7 14.7 159 789-961 10-213 (510)
159 TIGR02323 CP_lyasePhnK phospho 99.6 3.8E-15 8.3E-20 163.8 14.1 157 789-958 2-219 (253)
160 PRK13644 cbiO cobalt transport 99.6 3.4E-15 7.4E-20 166.5 13.8 154 791-958 2-205 (274)
161 PRK14274 phosphate ABC transpo 99.6 5.2E-15 1.1E-19 163.4 15.1 157 789-960 11-226 (259)
162 cd03250 ABCC_MRP_domain1 Domai 99.6 2.3E-15 5E-20 160.2 11.9 153 792-957 2-196 (204)
163 cd03300 ABC_PotA_N PotA is an 99.6 4.2E-15 9.2E-20 161.5 14.1 154 792-958 2-201 (232)
164 PRK13539 cytochrome c biogenes 99.6 3.5E-15 7.6E-20 159.4 13.2 150 790-953 2-192 (207)
165 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 2.1E-15 4.5E-20 152.4 10.9 136 792-958 2-137 (144)
166 TIGR03873 F420-0_ABC_ATP propo 99.6 2.8E-15 6.2E-20 165.2 12.9 155 791-959 2-208 (256)
167 COG0410 LivF ABC-type branched 99.6 3.7E-15 8.1E-20 157.9 13.1 161 789-961 2-210 (237)
168 PRK11701 phnK phosphonate C-P 99.6 5.4E-15 1.2E-19 163.2 15.0 158 789-959 5-223 (258)
169 PRK10938 putative molybdenum t 99.6 3.4E-15 7.3E-20 179.5 14.5 158 790-961 3-208 (490)
170 PRK13650 cbiO cobalt transport 99.6 3.6E-15 7.8E-20 166.7 13.7 159 789-958 3-210 (279)
171 cd03294 ABC_Pro_Gly_Bertaine T 99.6 1.7E-15 3.6E-20 168.4 11.0 146 806-959 35-232 (269)
172 cd03223 ABCD_peroxisomal_ALDP 99.6 3E-15 6.5E-20 154.7 12.1 143 792-957 2-156 (166)
173 PRK15093 antimicrobial peptide 99.6 5.4E-15 1.2E-19 169.1 15.4 164 789-961 2-232 (330)
174 PRK15056 manganese/iron transp 99.6 3.8E-15 8.3E-20 165.8 13.8 156 790-958 6-212 (272)
175 cd03247 ABCC_cytochrome_bd The 99.6 3.8E-15 8.3E-20 155.4 12.9 144 792-957 2-165 (178)
176 PRK10744 pstB phosphate transp 99.6 6.8E-15 1.5E-19 162.7 15.6 156 789-959 12-226 (260)
177 cd03298 ABC_ThiQ_thiamine_tran 99.6 4.3E-15 9.3E-20 158.9 13.4 153 792-959 2-200 (211)
178 TIGR01166 cbiO cobalt transpor 99.6 2.5E-15 5.3E-20 158.3 11.3 135 807-950 4-189 (190)
179 TIGR03608 L_ocin_972_ABC putat 99.6 2.9E-15 6.2E-20 159.4 11.9 148 794-956 2-201 (206)
180 COG1137 YhbG ABC-type (unclass 99.6 1.5E-15 3.2E-20 156.9 9.2 160 789-961 3-212 (243)
181 PRK13649 cbiO cobalt transport 99.6 6.4E-15 1.4E-19 164.6 15.2 160 791-959 3-216 (280)
182 PRK11308 dppF dipeptide transp 99.6 6.9E-15 1.5E-19 167.9 15.7 165 789-961 4-228 (327)
183 PRK10762 D-ribose transporter 99.6 4E-15 8.6E-20 179.4 14.5 159 789-961 3-214 (501)
184 PRK10771 thiQ thiamine transpo 99.6 5.1E-15 1.1E-19 160.8 13.9 153 791-958 2-200 (232)
185 PRK09580 sufC cysteine desulfu 99.6 5.5E-15 1.2E-19 161.9 14.3 153 791-957 2-215 (248)
186 PRK14247 phosphate ABC transpo 99.6 6.3E-15 1.4E-19 161.8 14.7 155 790-959 3-216 (250)
187 PRK14269 phosphate ABC transpo 99.6 5.1E-15 1.1E-19 162.3 13.8 155 790-959 2-212 (246)
188 PRK14239 phosphate transporter 99.6 7.2E-15 1.6E-19 161.4 15.0 157 789-960 4-219 (252)
189 PRK10418 nikD nickel transport 99.6 5.8E-15 1.3E-19 162.7 14.3 155 790-958 4-211 (254)
190 PRK14267 phosphate ABC transpo 99.6 7.9E-15 1.7E-19 161.3 15.3 156 789-959 3-219 (253)
191 PRK13549 xylose transporter AT 99.6 3.5E-15 7.5E-20 180.1 13.6 159 789-961 4-216 (506)
192 PRK14254 phosphate ABC transpo 99.6 8.5E-15 1.9E-19 164.2 15.8 157 787-958 36-249 (285)
193 TIGR00972 3a0107s01c2 phosphat 99.6 5.8E-15 1.3E-19 161.8 14.2 154 791-959 2-214 (247)
194 PRK10070 glycine betaine trans 99.6 3.8E-15 8.3E-20 173.7 13.4 146 808-961 41-238 (400)
195 TIGR01277 thiQ thiamine ABC tr 99.6 4E-15 8.6E-20 159.6 12.5 153 792-959 2-200 (213)
196 PRK14265 phosphate ABC transpo 99.6 7.8E-15 1.7E-19 163.6 15.3 158 789-961 19-233 (274)
197 cd03267 ABC_NatA_like Similar 99.6 2.4E-15 5.2E-20 164.0 10.9 145 806-958 32-224 (236)
198 PRK09700 D-allose transporter 99.6 5.1E-15 1.1E-19 178.8 14.7 159 789-961 4-218 (510)
199 PRK13640 cbiO cobalt transport 99.6 6.2E-15 1.3E-19 165.1 13.9 158 789-958 4-213 (282)
200 PRK14235 phosphate transporter 99.6 9.5E-15 2.1E-19 162.2 15.3 156 789-959 18-233 (267)
201 PRK11022 dppD dipeptide transp 99.6 7E-15 1.5E-19 167.9 14.5 163 790-961 3-227 (326)
202 PRK09473 oppD oligopeptide tra 99.6 8.7E-15 1.9E-19 167.3 15.3 165 788-961 10-235 (330)
203 TIGR02982 heterocyst_DevA ABC 99.6 8.2E-15 1.8E-19 157.9 14.3 158 791-958 2-211 (220)
204 cd03245 ABCC_bacteriocin_expor 99.6 6E-15 1.3E-19 158.7 13.1 154 791-958 3-208 (220)
205 PRK14270 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 160.1 15.3 157 789-960 3-218 (251)
206 PRK13645 cbiO cobalt transport 99.6 6.9E-15 1.5E-19 165.2 14.0 162 789-958 5-221 (289)
207 PRK10636 putative ABC transpor 99.6 1.2E-14 2.5E-19 179.9 17.3 157 788-961 310-500 (638)
208 PRK13639 cbiO cobalt transport 99.6 8.8E-15 1.9E-19 163.2 14.5 157 791-960 2-209 (275)
209 COG1117 PstB ABC-type phosphat 99.6 1.2E-14 2.7E-19 151.7 14.4 157 789-960 6-220 (253)
210 COG0488 Uup ATPase components 99.6 1.1E-14 2.4E-19 174.4 16.3 214 723-960 259-508 (530)
211 PRK14249 phosphate ABC transpo 99.6 1.4E-14 2.9E-19 159.3 15.4 157 789-960 3-218 (251)
212 PRK14251 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 159.9 14.8 156 789-959 3-217 (251)
213 COG1124 DppF ABC-type dipeptid 99.6 1.3E-14 2.8E-19 154.9 14.4 165 789-961 2-215 (252)
214 PRK14243 phosphate transporter 99.6 1.5E-14 3.3E-19 160.3 15.7 158 789-961 9-223 (264)
215 PRK14256 phosphate ABC transpo 99.6 1.3E-14 2.8E-19 159.6 15.0 157 789-960 3-219 (252)
216 TIGR01189 ccmA heme ABC export 99.6 6.6E-15 1.4E-19 156.1 12.2 145 792-950 2-189 (198)
217 PRK14237 phosphate transporter 99.6 1.6E-14 3.4E-19 160.5 15.7 158 789-961 19-235 (267)
218 cd00267 ABC_ATPase ABC (ATP-bi 99.6 6.7E-15 1.5E-19 150.3 11.7 148 793-958 2-150 (157)
219 PRK11288 araG L-arabinose tran 99.6 7.5E-15 1.6E-19 177.0 14.1 159 789-961 3-213 (501)
220 PRK14261 phosphate ABC transpo 99.6 1.5E-14 3.3E-19 159.1 15.1 156 789-959 5-219 (253)
221 PRK14262 phosphate ABC transpo 99.6 1.1E-14 2.4E-19 159.9 13.9 155 789-958 2-215 (250)
222 CHL00131 ycf16 sulfate ABC tra 99.6 1.4E-14 3.1E-19 159.1 14.8 157 789-958 6-222 (252)
223 PRK14255 phosphate ABC transpo 99.6 1.8E-14 3.9E-19 158.4 15.4 156 789-959 4-218 (252)
224 PRK13409 putative ATPase RIL; 99.6 8.5E-15 1.8E-19 179.1 14.1 160 788-961 338-527 (590)
225 cd03297 ABC_ModC_molybdenum_tr 99.6 1E-14 2.2E-19 156.4 13.0 138 813-959 16-203 (214)
226 PRK14253 phosphate ABC transpo 99.6 2E-14 4.3E-19 157.8 15.6 156 790-960 3-216 (249)
227 PRK14258 phosphate ABC transpo 99.6 1.7E-14 3.7E-19 159.7 15.0 160 789-961 6-224 (261)
228 COG0488 Uup ATPase components 99.6 5.4E-15 1.2E-19 177.1 11.9 152 789-958 2-220 (530)
229 PRK14271 phosphate ABC transpo 99.6 1.8E-14 3.9E-19 160.8 15.3 158 788-960 19-234 (276)
230 TIGR03269 met_CoM_red_A2 methy 99.6 1E-14 2.2E-19 176.7 14.3 157 791-960 1-241 (520)
231 TIGR01186 proV glycine betaine 99.6 9.4E-15 2E-19 168.6 13.3 149 806-962 4-204 (363)
232 TIGR02324 CP_lyasePhnL phospho 99.6 1.3E-14 2.8E-19 156.6 13.5 158 791-957 2-218 (224)
233 PRK11144 modC molybdate transp 99.6 1.2E-14 2.6E-19 167.7 14.1 155 791-961 2-202 (352)
234 PRK14236 phosphate transporter 99.6 2.5E-14 5.5E-19 159.3 16.2 156 789-959 24-238 (272)
235 TIGR02770 nickel_nikD nickel i 99.6 1E-14 2.2E-19 158.4 12.5 142 810-959 1-197 (230)
236 PRK10938 putative molybdenum t 99.6 7.4E-15 1.6E-19 176.6 12.6 158 789-959 259-474 (490)
237 cd03254 ABCC_Glucan_exporter_l 99.6 1.4E-14 3.1E-19 156.7 13.6 152 791-957 3-206 (229)
238 cd03222 ABC_RNaseL_inhibitor T 99.6 8.2E-15 1.8E-19 153.1 11.2 131 807-958 12-142 (177)
239 PRK14241 phosphate transporter 99.6 2.1E-14 4.6E-19 158.5 15.1 156 790-960 4-219 (258)
240 COG1135 AbcC ABC-type metal io 99.6 2.7E-14 5.9E-19 156.5 15.5 164 791-962 2-216 (339)
241 PRK14240 phosphate transporter 99.6 2.2E-14 4.7E-19 157.6 14.9 154 790-958 3-215 (250)
242 cd03233 ABC_PDR_domain1 The pl 99.6 2.5E-14 5.3E-19 152.5 14.8 162 789-959 2-191 (202)
243 TIGR02633 xylG D-xylose ABC tr 99.6 9.7E-15 2.1E-19 176.0 13.2 157 791-961 2-214 (500)
244 PRK14238 phosphate transporter 99.6 2.1E-14 4.5E-19 159.9 14.8 158 788-960 22-238 (271)
245 cd03248 ABCC_TAP TAP, the Tran 99.6 1.9E-14 4.2E-19 155.5 14.1 157 788-957 9-217 (226)
246 PRK14260 phosphate ABC transpo 99.6 3.4E-14 7.4E-19 157.0 16.3 158 789-961 6-222 (259)
247 cd03244 ABCC_MRP_domain2 Domai 99.6 2E-14 4.3E-19 154.8 14.1 153 791-957 3-206 (221)
248 PRK15134 microcin C ABC transp 99.6 1.1E-14 2.5E-19 176.6 13.6 163 789-960 4-229 (529)
249 TIGR02142 modC_ABC molybdenum 99.6 1.4E-14 3.1E-19 167.1 13.6 141 813-961 15-205 (354)
250 PRK14272 phosphate ABC transpo 99.6 2.4E-14 5.2E-19 157.3 14.6 155 790-959 4-218 (252)
251 PRK13642 cbiO cobalt transport 99.6 1.7E-14 3.6E-19 161.1 13.5 159 789-958 3-210 (277)
252 PRK13547 hmuV hemin importer A 99.6 1.6E-14 3.4E-19 161.0 13.2 156 791-958 2-225 (272)
253 PRK14264 phosphate ABC transpo 99.6 3.1E-14 6.8E-19 161.2 15.7 155 789-958 44-269 (305)
254 COG0396 sufC Cysteine desulfur 99.6 3.4E-14 7.4E-19 150.2 14.8 154 789-955 2-211 (251)
255 cd03238 ABC_UvrA The excision 99.6 9.1E-15 2E-19 152.6 10.4 141 808-957 8-157 (176)
256 PRK09700 D-allose transporter 99.6 1.5E-14 3.3E-19 174.7 14.0 155 789-959 264-480 (510)
257 PRK14244 phosphate ABC transpo 99.6 3.1E-14 6.6E-19 156.5 15.0 154 791-959 6-219 (251)
258 cd03251 ABCC_MsbA MsbA is an e 99.6 1.6E-14 3.5E-19 156.9 12.6 153 792-958 2-206 (234)
259 PRK14246 phosphate ABC transpo 99.6 2.6E-14 5.5E-19 158.0 13.8 157 789-960 9-224 (257)
260 PRK15064 ABC transporter ATP-b 99.6 1.5E-14 3.3E-19 175.6 13.1 151 791-958 2-222 (530)
261 cd03299 ABC_ModC_like Archeal 99.6 2.2E-14 4.7E-19 156.3 13.0 153 792-958 2-200 (235)
262 TIGR01184 ntrCD nitrate transp 99.6 1.6E-14 3.4E-19 157.0 11.8 140 812-959 2-186 (230)
263 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 1.4E-14 2.9E-19 156.9 11.1 155 791-958 23-212 (224)
264 TIGR03269 met_CoM_red_A2 methy 99.6 3.6E-14 7.7E-19 171.9 15.9 163 789-959 278-499 (520)
265 COG1129 MglA ABC-type sugar tr 99.6 2E-14 4.3E-19 168.8 13.0 160 789-961 7-218 (500)
266 cd03369 ABCC_NFT1 Domain 2 of 99.5 4.6E-14 9.9E-19 150.6 14.7 154 789-957 5-192 (207)
267 PRK15134 microcin C ABC transp 99.5 2.1E-14 4.5E-19 174.3 13.2 164 789-960 274-498 (529)
268 cd03252 ABCC_Hemolysin The ABC 99.5 3.1E-14 6.7E-19 155.0 13.3 152 792-957 2-205 (237)
269 PRK13545 tagH teichoic acids e 99.5 2.3E-14 4.9E-19 169.9 13.1 161 789-960 20-215 (549)
270 PRK10261 glutathione transport 99.5 2.5E-14 5.4E-19 176.7 14.0 165 788-961 10-242 (623)
271 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 3E-14 6.4E-19 155.2 12.7 154 792-958 2-207 (238)
272 PRK14252 phosphate ABC transpo 99.5 7.1E-14 1.5E-18 155.0 15.8 157 789-960 15-232 (265)
273 cd03253 ABCC_ATM1_transporter 99.5 3.4E-14 7.4E-19 154.5 13.0 151 792-957 2-204 (236)
274 PRK11819 putative ABC transpor 99.5 2.5E-14 5.4E-19 174.6 13.4 152 789-958 5-230 (556)
275 PLN03073 ABC transporter F fam 99.5 8.4E-14 1.8E-18 173.5 18.0 155 789-959 507-695 (718)
276 PRK10982 galactose/methyl gala 99.5 2.5E-14 5.4E-19 172.1 12.9 146 807-961 10-207 (491)
277 PRK13546 teichoic acids export 99.5 4E-14 8.6E-19 157.1 13.4 160 790-958 4-213 (264)
278 TIGR01257 rim_protein retinal- 99.5 3.3E-14 7.2E-19 189.7 15.0 167 789-967 1936-2150(2272)
279 PRK13549 xylose transporter AT 99.5 3E-14 6.4E-19 172.1 13.4 160 789-959 258-476 (506)
280 PRK15064 ABC transporter ATP-b 99.5 3.8E-14 8.3E-19 172.1 14.3 154 789-959 318-506 (530)
281 PRK10261 glutathione transport 99.5 4.5E-14 9.8E-19 174.4 15.1 166 788-961 311-537 (623)
282 PRK14266 phosphate ABC transpo 99.5 8E-14 1.7E-18 153.1 15.3 155 790-959 3-216 (250)
283 COG4674 Uncharacterized ABC-ty 99.5 4.2E-14 9E-19 145.7 11.4 183 789-987 4-243 (249)
284 TIGR02633 xylG D-xylose ABC tr 99.5 4.6E-14 9.9E-19 170.2 13.9 161 789-960 256-475 (500)
285 PRK14263 phosphate ABC transpo 99.5 1E-13 2.2E-18 153.6 15.2 158 789-961 7-221 (261)
286 PRK13541 cytochrome c biogenes 99.5 4.5E-14 9.7E-19 149.5 11.8 148 791-953 2-188 (195)
287 cd03237 ABC_RNaseL_inhibitor_d 99.5 5.1E-14 1.1E-18 154.7 12.6 147 810-960 9-188 (246)
288 TIGR03415 ABC_choXWV_ATP choli 99.5 3.6E-14 7.8E-19 164.6 11.9 148 806-961 35-238 (382)
289 cd03234 ABCG_White The White s 99.5 6.3E-14 1.4E-18 151.7 13.1 160 790-959 3-215 (226)
290 cd03290 ABCC_SUR1_N The SUR do 99.5 5.8E-14 1.3E-18 151.0 12.6 141 808-957 14-210 (218)
291 PRK15439 autoinducer 2 ABC tra 99.5 4.7E-14 1E-18 170.5 12.9 152 789-959 267-474 (510)
292 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 6.1E-14 1.3E-18 171.0 13.8 155 788-959 320-511 (552)
293 cd03289 ABCC_CFTR2 The CFTR su 99.5 1.5E-13 3.2E-18 153.4 14.9 154 791-958 3-206 (275)
294 PRK10762 D-ribose transporter 99.5 8.6E-14 1.9E-18 167.9 13.7 153 789-960 256-467 (501)
295 PRK11819 putative ABC transpor 99.5 8.6E-14 1.9E-18 169.9 13.8 153 789-958 323-512 (556)
296 PRK03695 vitamin B12-transport 99.5 6.9E-14 1.5E-18 153.7 11.7 141 810-959 11-204 (248)
297 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 8.9E-14 1.9E-18 169.7 13.6 154 789-958 3-228 (552)
298 TIGR01257 rim_protein retinal- 99.5 8.1E-14 1.8E-18 186.1 14.1 161 788-961 926-1133(2272)
299 PRK10636 putative ABC transpor 99.5 1.1E-13 2.5E-18 171.1 14.2 151 791-958 2-216 (638)
300 PRK10982 galactose/methyl gala 99.5 9.1E-14 2E-18 167.3 12.8 155 789-959 249-462 (491)
301 cd03288 ABCC_SUR2 The SUR doma 99.5 2.1E-13 4.5E-18 150.7 14.5 155 789-957 18-223 (257)
302 PRK14257 phosphate ABC transpo 99.5 3.4E-13 7.3E-18 154.2 16.5 160 789-961 79-297 (329)
303 cd03291 ABCC_CFTR1 The CFTR su 99.5 1.9E-13 4.2E-18 153.0 13.4 152 789-957 38-227 (282)
304 PRK11288 araG L-arabinose tran 99.5 1.4E-13 3.1E-18 166.0 13.1 153 789-959 256-467 (501)
305 COG4181 Predicted ABC-type tra 99.5 1.3E-13 2.8E-18 139.3 10.3 166 789-963 5-222 (228)
306 PRK11147 ABC transporter ATPas 99.5 1.6E-13 3.4E-18 170.0 13.3 157 788-961 317-510 (635)
307 COG4598 HisP ABC-type histidin 99.5 2.2E-13 4.8E-18 138.5 11.9 165 789-968 5-230 (256)
308 COG4619 ABC-type uncharacteriz 99.5 1.6E-13 3.5E-18 138.3 10.7 155 806-965 14-212 (223)
309 TIGR03771 anch_rpt_ABC anchore 99.5 2.5E-13 5.4E-18 146.9 13.1 132 824-960 5-185 (223)
310 cd03236 ABC_RNaseL_inhibitor_d 99.5 4E-13 8.6E-18 148.4 14.5 141 809-959 15-210 (255)
311 COG2274 SunT ABC-type bacterio 99.5 7.9E-13 1.7E-17 163.4 17.5 153 790-955 471-675 (709)
312 COG0444 DppD ABC-type dipeptid 99.5 4.8E-13 1.1E-17 148.5 13.5 164 791-963 2-229 (316)
313 PRK15177 Vi polysaccharide exp 99.5 3.8E-13 8.3E-18 144.6 12.2 140 810-959 2-174 (213)
314 PRK11147 ABC transporter ATPas 99.4 3.8E-13 8.2E-18 166.6 13.8 150 790-958 3-223 (635)
315 COG4525 TauB ABC-type taurine 99.4 1.4E-12 3.1E-17 134.5 15.5 144 808-958 18-203 (259)
316 KOG0062 ATPase component of AB 99.4 2.1E-13 4.5E-18 157.3 10.5 151 790-956 80-263 (582)
317 COG1134 TagH ABC-type polysacc 99.4 3E-13 6.6E-18 144.7 10.8 146 807-959 39-218 (249)
318 PRK10522 multidrug transporter 99.4 2.3E-12 5.1E-17 157.1 19.9 152 790-953 322-515 (547)
319 COG4604 CeuD ABC-type enteroch 99.4 3.7E-13 8E-18 139.0 10.4 155 791-958 2-206 (252)
320 PRK13409 putative ATPase RIL; 99.4 5E-13 1.1E-17 163.6 13.5 150 796-961 79-284 (590)
321 COG4559 ABC-type hemin transpo 99.4 1.2E-12 2.6E-17 136.7 14.1 159 791-960 2-213 (259)
322 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 3E-12 6.5E-17 160.2 19.9 149 790-953 451-650 (686)
323 COG1123 ATPase components of v 99.4 1.1E-12 2.4E-17 155.2 14.6 167 789-964 4-231 (539)
324 PRK13657 cyclic beta-1,2-gluca 99.4 3.6E-12 7.8E-17 156.8 19.8 151 789-953 333-535 (588)
325 PLN03073 ABC transporter F fam 99.4 6.2E-13 1.3E-17 165.8 13.2 153 789-958 176-411 (718)
326 COG4988 CydD ABC-type transpor 99.4 3.6E-12 7.8E-17 150.4 18.6 194 736-955 276-522 (559)
327 COG3845 ABC-type uncharacteriz 99.4 1.2E-12 2.7E-17 151.1 14.4 170 789-970 3-223 (501)
328 COG4586 ABC-type uncharacteriz 99.4 1.2E-12 2.6E-17 141.2 12.8 144 809-959 38-228 (325)
329 TIGR01194 cyc_pep_trnsptr cycl 99.4 1.3E-12 2.9E-17 159.5 15.1 160 789-957 336-539 (555)
330 TIGR01842 type_I_sec_PrtD type 99.4 6E-12 1.3E-16 153.4 20.3 156 789-957 315-522 (544)
331 PLN03211 ABC transporter G-25; 99.4 6.4E-13 1.4E-17 164.6 11.9 145 807-960 80-279 (659)
332 PRK10790 putative multidrug tr 99.4 6.8E-12 1.5E-16 154.4 20.0 151 789-953 339-540 (592)
333 TIGR03375 type_I_sec_LssB type 99.4 6.3E-12 1.4E-16 157.5 19.8 152 789-953 462-665 (694)
334 COG3840 ThiQ ABC-type thiamine 99.4 1.5E-12 3.3E-17 133.0 11.3 141 811-958 15-200 (231)
335 COG4133 CcmA ABC-type transpor 99.4 1E-12 2.2E-17 135.2 10.1 135 806-949 13-191 (209)
336 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.7E-12 3.8E-17 162.9 14.3 152 790-957 477-680 (710)
337 TIGR01193 bacteriocin_ABC ABC- 99.4 7.4E-12 1.6E-16 157.3 19.9 149 790-953 473-674 (708)
338 TIGR02203 MsbA_lipidA lipid A 99.4 7.8E-12 1.7E-16 153.2 19.6 151 790-953 330-533 (571)
339 COG4175 ProV ABC-type proline/ 99.4 1.7E-12 3.6E-17 142.4 12.1 146 809-961 42-238 (386)
340 TIGR02204 MsbA_rel ABC transpo 99.4 9E-12 1.9E-16 152.8 19.8 153 789-953 336-540 (576)
341 PRK11176 lipid transporter ATP 99.4 1E-11 2.2E-16 152.6 19.9 151 790-953 341-544 (582)
342 TIGR01192 chvA glucan exporter 99.4 1.4E-11 3E-16 151.5 20.1 151 789-953 333-535 (585)
343 cd03278 ABC_SMC_barmotin Barmo 99.4 3.2E-12 6.8E-17 136.0 12.2 132 812-952 14-180 (197)
344 COG4107 PhnK ABC-type phosphon 99.4 3.4E-12 7.4E-17 129.2 11.5 164 788-962 4-226 (258)
345 PRK10535 macrolide transporter 99.4 4E-12 8.7E-17 157.8 14.8 159 789-958 3-213 (648)
346 COG1123 ATPase components of v 99.4 4.8E-12 1E-16 149.8 14.3 168 788-962 278-504 (539)
347 TIGR00954 3a01203 Peroxysomal 99.4 3.8E-12 8.1E-17 158.3 13.9 152 789-957 450-647 (659)
348 TIGR01187 potA spermidine/putr 99.4 2.3E-12 4.9E-17 147.3 11.0 128 830-961 1-174 (325)
349 PRK11160 cysteine/glutathione 99.4 2E-11 4.4E-16 149.8 20.1 152 789-953 337-539 (574)
350 PRK10789 putative multidrug tr 99.4 2.4E-11 5.3E-16 148.9 20.6 151 790-953 313-515 (569)
351 COG4608 AppF ABC-type oligopep 99.4 7E-12 1.5E-16 136.7 13.9 167 789-963 3-185 (268)
352 TIGR01846 type_I_sec_HlyB type 99.3 2.2E-11 4.7E-16 152.7 20.3 154 790-957 455-660 (694)
353 PRK11174 cysteine/glutathione 99.3 1.9E-11 4.1E-16 150.4 19.1 150 790-953 349-549 (588)
354 TIGR02868 CydC thiol reductant 99.3 1.9E-11 4.2E-16 148.4 18.9 145 790-948 334-529 (529)
355 PF05188 MutS_II: MutS domain 99.3 1.1E-11 2.4E-16 123.0 13.7 134 391-541 1-134 (137)
356 TIGR02857 CydD thiol reductant 99.3 2E-11 4.3E-16 148.4 18.6 151 790-953 320-522 (529)
357 TIGR00958 3a01208 Conjugate Tr 99.3 2.3E-11 5E-16 152.8 19.7 151 789-953 477-679 (711)
358 KOG0057 Mitochondrial Fe/S clu 99.3 3.4E-11 7.4E-16 140.4 19.3 160 790-963 351-561 (591)
359 KOG0927 Predicted transporter 99.3 3E-12 6.5E-17 148.5 10.1 158 788-959 387-577 (614)
360 cd03270 ABC_UvrA_I The excisio 99.3 1.1E-11 2.4E-16 134.5 11.9 143 807-958 7-208 (226)
361 COG4987 CydC ABC-type transpor 99.3 1.3E-11 2.8E-16 143.8 12.7 155 790-957 336-542 (573)
362 KOG0059 Lipid exporter ABCA1 a 99.3 1.3E-11 2.8E-16 157.8 13.5 168 790-968 564-779 (885)
363 TIGR00955 3a01204 The Eye Pigm 99.3 1.6E-11 3.4E-16 151.8 13.2 147 806-961 36-240 (617)
364 COG4618 ArpD ABC-type protease 99.3 8.1E-11 1.7E-15 136.2 17.9 154 790-955 334-539 (580)
365 PLN03140 ABC transporter G fam 99.3 2.3E-11 4.9E-16 161.6 15.2 163 790-961 867-1093(1470)
366 TIGR00956 3a01205 Pleiotropic 99.3 1.9E-11 4.2E-16 162.5 13.8 163 789-961 758-976 (1394)
367 PTZ00265 multidrug resistance 99.3 2.9E-11 6.4E-16 161.1 15.0 160 790-960 382-651 (1466)
368 cd03279 ABC_sbcCD SbcCD and ot 99.2 4.1E-11 8.9E-16 128.8 11.9 155 790-959 5-204 (213)
369 COG4161 ArtP ABC-type arginine 99.2 1.3E-10 2.7E-15 116.7 12.9 154 791-958 3-211 (242)
370 TIGR00956 3a01205 Pleiotropic 99.2 6.1E-11 1.3E-15 157.8 12.7 145 808-960 74-283 (1394)
371 COG1101 PhnK ABC-type uncharac 99.2 1E-10 2.2E-15 122.7 11.3 146 807-957 18-218 (263)
372 TIGR00957 MRP_assoc_pro multi 99.2 3E-10 6.5E-15 152.8 18.3 157 790-957 636-830 (1522)
373 PTZ00243 ABC transporter; Prov 99.2 5.8E-11 1.2E-15 159.5 10.9 142 807-958 672-851 (1560)
374 COG4148 ModC ABC-type molybdat 99.2 6.2E-11 1.4E-15 128.3 9.0 141 813-960 16-201 (352)
375 PLN03140 ABC transporter G fam 99.2 5.7E-11 1.2E-15 157.9 10.6 145 808-960 178-410 (1470)
376 KOG0927 Predicted transporter 99.2 1.5E-10 3.2E-15 134.7 12.3 152 790-957 75-288 (614)
377 COG4778 PhnL ABC-type phosphon 99.2 1.2E-10 2.5E-15 118.0 10.0 161 790-958 4-222 (235)
378 PLN03232 ABC transporter C fam 99.2 4.5E-10 9.7E-15 150.9 18.5 152 790-954 1234-1436(1495)
379 COG1132 MdlB ABC-type multidru 99.2 2.4E-10 5.3E-15 140.1 14.7 157 790-961 328-536 (567)
380 TIGR01271 CFTR_protein cystic 99.1 7.9E-11 1.7E-15 157.9 10.8 142 808-959 439-618 (1490)
381 PLN03130 ABC transporter C fam 99.1 4.8E-10 1E-14 151.0 18.3 157 790-960 1237-1444(1622)
382 PLN03232 ABC transporter C fam 99.1 6.6E-10 1.4E-14 149.4 18.8 155 789-954 613-806 (1495)
383 cd03240 ABC_Rad50 The catalyti 99.1 3E-10 6.4E-15 121.6 11.9 57 895-953 132-188 (204)
384 cd03271 ABC_UvrA_II The excisi 99.1 5.6E-10 1.2E-14 123.6 14.3 79 873-956 154-239 (261)
385 KOG0055 Multidrug/pheromone ex 99.1 2.5E-10 5.3E-15 144.5 12.8 156 789-957 349-556 (1228)
386 TIGR01271 CFTR_protein cystic 99.1 3.6E-10 7.8E-15 151.7 14.7 153 789-954 1216-1418(1490)
387 cd03274 ABC_SMC4_euk Eukaryoti 99.1 4.5E-10 9.8E-15 120.9 11.7 148 790-957 5-198 (212)
388 PLN03130 ABC transporter C fam 99.1 4.7E-10 1E-14 151.1 14.3 155 789-954 613-806 (1622)
389 PTZ00243 ABC transporter; Prov 99.1 4.9E-10 1.1E-14 150.7 14.3 152 790-954 1308-1511(1560)
390 TIGR00957 MRP_assoc_pro multi 99.1 1.3E-09 2.9E-14 146.7 17.9 152 790-954 1284-1486(1522)
391 PTZ00265 multidrug resistance 99.1 5.4E-10 1.2E-14 149.2 13.4 154 790-953 1165-1424(1466)
392 KOG0061 Transporter, ABC super 99.1 5.8E-10 1.3E-14 137.3 12.6 159 790-956 25-240 (613)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.1 5.2E-10 1.1E-14 119.2 10.4 127 827-954 23-182 (198)
394 KOG0066 eIF2-interacting prote 99.1 5E-10 1.1E-14 126.4 10.4 149 789-953 585-766 (807)
395 KOG0056 Heavy metal exporter H 99.1 7E-10 1.5E-14 126.9 11.6 149 789-951 536-736 (790)
396 PF00005 ABC_tran: ABC transpo 99.0 2.3E-10 4.9E-15 113.7 6.1 97 811-914 1-136 (137)
397 COG4136 ABC-type uncharacteriz 99.0 7.6E-10 1.6E-14 110.1 8.6 140 806-952 13-199 (213)
398 COG4172 ABC-type uncharacteriz 99.0 3.2E-09 7E-14 120.0 14.5 165 789-962 5-232 (534)
399 cd03239 ABC_SMC_head The struc 99.0 1E-09 2.3E-14 115.0 9.6 122 827-952 24-162 (178)
400 cd03272 ABC_SMC3_euk Eukaryoti 99.0 2.8E-09 6.1E-14 116.5 13.1 69 886-958 160-230 (243)
401 cd03275 ABC_SMC1_euk Eukaryoti 99.0 1.9E-09 4.1E-14 118.7 11.1 68 886-956 157-226 (247)
402 KOG0058 Peptide exporter, ABC 99.0 3.7E-09 7.9E-14 127.6 14.3 153 789-953 464-668 (716)
403 COG2401 ABC-type ATPase fused 99.0 3.2E-09 6.9E-14 120.1 11.6 142 807-955 395-575 (593)
404 cd03273 ABC_SMC2_euk Eukaryoti 99.0 5.2E-09 1.1E-13 115.4 13.2 68 883-953 165-234 (251)
405 COG4615 PvdE ABC-type sideroph 98.9 2E-08 4.4E-13 113.2 15.0 152 789-952 321-513 (546)
406 COG4172 ABC-type uncharacteriz 98.9 2.5E-08 5.4E-13 112.9 14.7 165 787-961 273-500 (534)
407 cd03277 ABC_SMC5_euk Eukaryoti 98.9 6.2E-09 1.3E-13 112.2 9.4 54 902-956 146-200 (213)
408 COG4138 BtuD ABC-type cobalami 98.9 2.3E-09 5E-14 109.2 5.5 133 824-959 24-203 (248)
409 COG4178 ABC-type uncharacteriz 98.9 6.8E-08 1.5E-12 116.4 18.9 153 789-955 391-581 (604)
410 KOG0062 ATPase component of AB 98.8 2E-08 4.3E-13 116.8 12.8 241 695-961 279-552 (582)
411 COG1245 Predicted ATPase, RNas 98.8 3.8E-08 8.2E-13 112.9 13.0 135 824-961 99-286 (591)
412 TIGR00630 uvra excinuclease AB 98.8 7E-08 1.5E-12 123.0 15.2 81 873-956 813-898 (924)
413 KOG0055 Multidrug/pheromone ex 98.8 5.8E-08 1.3E-12 123.5 14.2 153 790-954 987-1191(1228)
414 PRK00349 uvrA excinuclease ABC 98.7 1E-07 2.3E-12 121.6 15.2 67 885-956 831-900 (943)
415 COG1245 Predicted ATPase, RNas 98.7 3.4E-08 7.4E-13 113.3 9.2 133 824-958 366-526 (591)
416 PRK00635 excinuclease ABC subu 98.7 9.7E-08 2.1E-12 127.1 12.7 72 885-959 810-882 (1809)
417 KOG0066 eIF2-interacting prote 98.6 1.9E-08 4.2E-13 113.8 4.9 56 895-957 423-478 (807)
418 KOG2355 Predicted ABC-type tra 98.6 1.8E-07 3.8E-12 97.9 10.3 153 789-955 12-215 (291)
419 KOG0064 Peroxisomal long-chain 98.6 4.8E-07 1E-11 105.4 13.9 135 807-952 494-673 (728)
420 KOG0054 Multidrug resistance-a 98.6 7.1E-07 1.5E-11 116.2 16.7 158 787-955 515-710 (1381)
421 COG3910 Predicted ATPase [Gene 98.5 4.6E-07 1E-11 93.8 9.3 56 895-952 137-192 (233)
422 KOG0060 Long-chain acyl-CoA tr 98.5 7.6E-07 1.6E-11 105.1 11.7 152 789-952 432-631 (659)
423 COG4167 SapF ABC-type antimicr 98.5 9.8E-07 2.1E-11 90.9 11.0 165 789-960 3-222 (267)
424 COG1129 MglA ABC-type sugar tr 98.4 1.4E-06 3.1E-11 103.3 12.5 156 789-962 262-475 (500)
425 cd03241 ABC_RecN RecN ATPase i 98.4 1.9E-06 4.1E-11 96.6 12.6 50 904-957 192-241 (276)
426 COG4170 SapD ABC-type antimicr 98.4 1.2E-06 2.5E-11 91.9 9.1 164 790-962 3-233 (330)
427 KOG0054 Multidrug resistance-a 98.4 2.7E-06 5.8E-11 111.0 14.3 151 790-953 1138-1339(1381)
428 KOG0065 Pleiotropic drug resis 98.4 3.8E-07 8.3E-12 116.3 6.5 154 789-950 786-992 (1391)
429 COG5265 ATM1 ABC-type transpor 98.3 6.2E-06 1.3E-10 94.6 14.6 149 790-952 262-462 (497)
430 TIGR02858 spore_III_AA stage I 98.2 2.5E-06 5.3E-11 95.3 8.0 110 826-952 112-233 (270)
431 PRK08533 flagellar accessory p 98.1 1.5E-05 3.3E-10 87.1 10.9 124 824-950 23-164 (230)
432 PRK00635 excinuclease ABC subu 98.1 1E-05 2.2E-10 108.4 10.6 57 895-953 1710-1767(1809)
433 PF02463 SMC_N: RecF/RecN/SMC 98.1 1.7E-05 3.6E-10 85.6 10.6 53 901-956 155-207 (220)
434 PRK13695 putative NTPase; Prov 98.0 1.5E-05 3.3E-10 83.0 8.7 56 902-961 94-152 (174)
435 COG0178 UvrA Excinuclease ATPa 98.0 1.5E-05 3.2E-10 97.6 9.4 50 902-953 841-890 (935)
436 cd03242 ABC_RecF RecF is a rec 98.0 4.1E-05 8.9E-10 85.6 11.2 64 886-955 185-255 (270)
437 PF13304 AAA_21: AAA domain; P 97.9 1.9E-05 4E-10 84.1 7.8 55 895-951 247-302 (303)
438 cd01120 RecA-like_NTPases RecA 97.9 3.9E-05 8.5E-10 77.2 8.8 122 828-951 2-140 (165)
439 cd01124 KaiC KaiC is a circadi 97.8 5.9E-05 1.3E-09 78.8 9.3 120 828-950 2-142 (187)
440 smart00382 AAA ATPases associa 97.8 0.0001 2.2E-09 71.2 10.3 25 825-849 2-26 (148)
441 PRK06067 flagellar accessory p 97.8 0.00011 2.4E-09 80.2 10.5 124 824-950 24-167 (234)
442 cd01131 PilT Pilus retraction 97.6 0.00014 3E-09 77.7 8.4 110 827-952 3-113 (198)
443 KOG0219 Mismatch repair ATPase 97.6 4.6E-06 1E-10 101.1 -4.5 217 789-1026 623-840 (902)
444 TIGR02788 VirB11 P-type DNA tr 97.5 0.00027 5.8E-09 80.7 8.4 108 824-953 143-258 (308)
445 PRK09183 transposase/IS protei 97.5 0.00034 7.4E-09 77.9 8.8 104 824-948 101-206 (259)
446 cd00009 AAA The AAA+ (ATPases 97.4 0.00055 1.2E-08 66.8 8.6 25 825-849 19-43 (151)
447 COG3845 ABC-type uncharacteriz 97.4 0.0015 3.2E-08 77.1 13.1 162 788-962 255-477 (501)
448 PRK14722 flhF flagellar biosyn 97.4 0.00045 9.7E-09 80.5 8.5 85 824-916 136-227 (374)
449 PRK04296 thymidine kinase; Pro 97.3 0.0011 2.4E-08 70.4 10.1 112 825-948 2-116 (190)
450 KOG0063 RNAse L inhibitor, ABC 97.3 0.00034 7.4E-09 80.5 6.5 132 825-958 367-527 (592)
451 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00014 3E-09 70.1 2.2 35 808-846 2-36 (107)
452 KOG0065 Pleiotropic drug resis 97.2 0.00056 1.2E-08 88.3 8.1 142 808-956 128-331 (1391)
453 cd01130 VirB11-like_ATPase Typ 97.1 0.00073 1.6E-08 71.4 6.5 25 824-848 24-48 (186)
454 PRK14721 flhF flagellar biosyn 97.1 0.00093 2E-08 79.0 7.7 89 824-921 190-284 (420)
455 TIGR01420 pilT_fam pilus retra 97.1 0.00092 2E-08 77.5 7.6 112 824-951 121-233 (343)
456 PRK06995 flhF flagellar biosyn 97.1 0.00082 1.8E-08 80.7 7.3 85 824-916 255-346 (484)
457 PF13401 AAA_22: AAA domain; P 97.1 0.0011 2.3E-08 65.0 7.0 114 824-947 3-125 (131)
458 PRK06526 transposase; Provisio 97.1 0.0022 4.8E-08 71.3 10.0 104 825-948 98-201 (254)
459 PRK06893 DNA replication initi 97.1 0.0016 3.5E-08 71.1 8.8 94 826-948 40-134 (229)
460 PRK06921 hypothetical protein; 97.1 0.0029 6.3E-08 70.9 10.6 102 825-948 117-225 (266)
461 cd01125 repA Hexameric Replica 97.0 0.0031 6.7E-08 69.2 10.5 123 825-949 1-160 (239)
462 PRK14723 flhF flagellar biosyn 97.0 0.0021 4.5E-08 80.7 10.1 86 824-917 184-276 (767)
463 TIGR00630 uvra excinuclease AB 97.0 0.002 4.3E-08 83.1 10.1 74 882-958 485-558 (924)
464 PF13555 AAA_29: P-loop contai 97.0 0.0005 1.1E-08 59.8 3.2 32 812-848 15-46 (62)
465 PRK00349 uvrA excinuclease ABC 97.0 0.0018 3.9E-08 83.7 9.2 84 872-958 473-560 (943)
466 cd01393 recA_like RecA is a b 97.0 0.0055 1.2E-07 66.2 11.7 127 824-951 18-172 (226)
467 PRK12723 flagellar biosynthesi 97.0 0.0071 1.5E-07 71.1 13.3 87 825-918 174-268 (388)
468 PRK06793 fliI flagellum-specif 97.0 0.0017 3.7E-08 77.0 8.1 135 810-956 146-294 (432)
469 cd01122 GP4d_helicase GP4d_hel 97.0 0.0034 7.5E-08 69.9 10.0 38 809-850 18-55 (271)
470 PRK11889 flhF flagellar biosyn 97.0 0.0082 1.8E-07 70.2 13.2 86 825-918 241-334 (436)
471 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0036 7.7E-08 68.1 9.9 125 824-948 18-170 (235)
472 PF13481 AAA_25: AAA domain; P 96.9 0.004 8.8E-08 65.4 9.9 124 824-947 31-188 (193)
473 PRK07721 fliI flagellum-specif 96.9 0.0026 5.5E-08 75.9 8.8 37 807-848 145-181 (438)
474 PRK05703 flhF flagellar biosyn 96.9 0.0071 1.5E-07 72.1 12.4 87 825-918 221-313 (424)
475 PRK14088 dnaA chromosomal repl 96.9 0.0025 5.4E-08 76.4 8.6 110 826-954 131-244 (440)
476 cd01121 Sms Sms (bacterial rad 96.9 0.0075 1.6E-07 70.7 12.0 119 824-948 81-210 (372)
477 cd00984 DnaB_C DnaB helicase C 96.8 0.011 2.3E-07 64.7 12.4 127 824-950 12-175 (242)
478 PF00004 AAA: ATPase family as 96.8 0.0027 5.7E-08 61.9 6.9 102 828-951 1-115 (132)
479 PRK12727 flagellar biosynthesi 96.8 0.0057 1.2E-07 73.9 10.9 89 824-916 349-440 (559)
480 PRK08181 transposase; Validate 96.8 0.006 1.3E-07 68.4 10.4 104 825-948 106-209 (269)
481 PF13173 AAA_14: AAA domain 96.8 0.0053 1.1E-07 60.8 8.6 98 825-951 2-102 (128)
482 TIGR00767 rho transcription te 96.8 0.0037 8E-08 73.2 8.4 51 790-848 130-191 (415)
483 PRK06731 flhF flagellar biosyn 96.8 0.019 4.1E-07 64.5 13.7 90 824-917 74-167 (270)
484 TIGR03015 pepcterm_ATPase puta 96.8 0.007 1.5E-07 67.1 10.3 23 825-847 43-65 (269)
485 TIGR00416 sms DNA repair prote 96.7 0.01 2.2E-07 71.4 12.1 120 824-949 93-223 (454)
486 PRK11823 DNA repair protein Ra 96.7 0.0076 1.6E-07 72.4 10.9 118 824-947 79-207 (446)
487 TIGR02237 recomb_radB DNA repa 96.7 0.011 2.3E-07 63.4 11.0 121 824-948 11-150 (209)
488 PRK12377 putative replication 96.7 0.0071 1.5E-07 67.1 9.8 104 826-947 102-205 (248)
489 PF01695 IstB_IS21: IstB-like 96.7 0.0045 9.8E-08 65.2 7.7 103 825-947 47-149 (178)
490 TIGR02012 tigrfam_recA protein 96.7 0.0092 2E-07 68.4 10.7 123 824-949 54-193 (321)
491 PRK07952 DNA replication prote 96.7 0.0042 9E-08 68.7 7.6 104 827-947 101-204 (244)
492 TIGR03499 FlhF flagellar biosy 96.7 0.0038 8.3E-08 70.4 7.4 83 825-914 194-282 (282)
493 PLN03210 Resistant to P. syrin 96.6 0.0044 9.6E-08 82.7 9.0 24 824-847 206-229 (1153)
494 PF00448 SRP54: SRP54-type pro 96.6 0.0055 1.2E-07 65.6 8.0 104 826-932 2-111 (196)
495 PRK09361 radB DNA repair and r 96.6 0.01 2.3E-07 64.3 10.3 123 824-948 22-162 (225)
496 cd01128 rho_factor Transcripti 96.6 0.0032 6.9E-08 69.8 6.2 25 824-848 15-39 (249)
497 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.016 3.5E-07 63.0 11.4 25 824-848 19-43 (229)
498 PRK08727 hypothetical protein; 96.6 0.0088 1.9E-07 65.6 9.2 93 825-948 41-136 (233)
499 PTZ00454 26S protease regulato 96.5 0.01 2.3E-07 70.1 10.3 24 825-848 179-202 (398)
500 PRK08939 primosomal protein Dn 96.5 0.014 3.1E-07 66.6 11.1 103 826-948 157-261 (306)
No 1
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.4e-139 Score=1237.09 Aligned_cols=761 Identities=38% Similarity=0.603 Sum_probs=613.0
Q ss_pred ccCCcccccCCCCCCcCCCCCCCCCCCCCcccccChhhhccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHh
Q 040956 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGH 308 (1085)
Q Consensus 229 ~~~~~~~~l~p~~irD~~gr~p~dp~YDp~Tl~iP~~~~~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaa 308 (1085)
..++++.||.++++||+++|||+||+|||+||||||++|+++||+++|||+||++|||+|||||+|||||||++||.+++
T Consensus 207 ~~~E~~r~l~~e~~RD~~rrr~~dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~ 286 (1125)
T KOG0217|consen 207 FDHEKERYLKLEDVRDALRRRRGDPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGA 286 (1125)
T ss_pred hcccchhhccHHHhhhhhcCCCCCCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhh
Confidence 34555667777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccEEEecCCCCccccccCccCHHHHHHHHHHcCCeEEEEeecCChHHHhhcc-----CCCceeeeEEEEecCCcccc
Q 040956 309 KELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH-----TNSVISRKLVNVVTPSTTVD 383 (1085)
Q Consensus 309 k~L~L~lT~~~~g~~~~aGfPe~sl~~y~~kLV~~GYKVAVVEQ~Et~~~~k~r~-----~~~vv~Rev~~V~TpGT~~d 383 (1085)
++|+|++|. ++++|+||||++|+.|+.+|+++|||||+|||+|||.++..|. +++||+||||+|+|+||++|
T Consensus 287 ~~~dl~f~~---vN~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td 363 (1125)
T KOG0217|consen 287 RLFDLKFMD---VNMPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTD 363 (1125)
T ss_pred hhcceeecc---cccccCCCCccchhhHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchh
Confidence 999999984 8999999999999999999999999999999999999887663 36799999999999999999
Q ss_pred CCCC--CCCceEEEEeecCCCCCCCCceEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHH
Q 040956 384 GTIG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQK 461 (1085)
Q Consensus 384 ~~~~--~~~~yllaI~E~~~~~~~~~~~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k 461 (1085)
..+. +.+.||+||+|.......+...+|+|++|++||+|+++||+||..++.|+|+|.|++|+|+|.+.++++..+..
T Consensus 364 ~~l~~~~~akylmai~e~~~~~~~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~ 443 (1125)
T KOG0217|consen 364 IALLTSDLAKYLMAIKESEESYSTGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKV 443 (1125)
T ss_pred HHHhccHHHHHHHHHhhcCCCCCcCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceee
Confidence 7764 34679999998755333567889999999999999999999999999999999999999999999998877765
Q ss_pred HHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCCCC-CCchhhhhhh-hcCchhHHHHHHHHHHHHHHhccccc
Q 040956 462 ALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS-SSPWSKALEN-VMQHDIGFSALGGLISHLSRLMLDDV 539 (1085)
Q Consensus 462 ~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~-~~~~~~~l~~-~~~~~~al~Alg~ll~YL~~~~l~~~ 539 (1085)
.++-.+..+.. .+-++ ..+||+++.+.+.+-...||... ...|+..+.. ..+.+++++|+|++++||+.+.+|..
T Consensus 444 ~ik~~~~~~~~--~n~~~-~~eFwdsek~~~eii~~dy~~~~g~e~~~sil~~p~~~~~la~safg~~~~Ylk~~~id~~ 520 (1125)
T KOG0217|consen 444 IIKLKLSSNLV--ENLVP-KSEFWDSEKTGREIISEDYFESLGLEDSPSILKSPNTDKELALSAFGGLFYYLKKLLIDEE 520 (1125)
T ss_pred eeeeeecchhh--hcccC-hhhhcchhhHHHHHhhhhhhhcccccCchhhccCCCccchhhHHHHHHHHHHHHHHhhHHH
Confidence 55433221111 22233 45999998887755556787721 3345555543 23467999999999999999999874
Q ss_pred -cccCCccccccc-cccccccccee--------------------ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHH
Q 040956 540 -LRNGDILPYKVY-RDCLRMDGQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVV 597 (1085)
Q Consensus 540 -l~~~~~~~~~~~-~~~m~lD~~Tl--------------------~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daV 597 (1085)
++...+..|... ...|.+|++|| .+|+|.||||||||+.|+++||+|.+.|++|||||
T Consensus 521 llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav 600 (1125)
T KOG0217|consen 521 LLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAV 600 (1125)
T ss_pred HhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHH
Confidence 333333333221 34599999998 89999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 040956 598 EYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDLLMLM------ 671 (1085)
Q Consensus 598 e~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~~l~~l~~~~l~~~i~~~~~l~~~l~~~~d~l~~l------ 671 (1085)
+.|..++..+..+...|+++||+||+|.|+|+...... ..+..|...+.+++...+++..+
T Consensus 601 ~~l~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~~~-------------k~i~~f~rvLegfk~~~~~~~~~~~v~~~ 667 (1125)
T KOG0217|consen 601 DSLGKAPMDRTKVGETLKKLPDLERLLVRIHNGGEKNK-------------KKIADFIRVLEGFKEINKLLGSLINVLKE 667 (1125)
T ss_pred HHHhcCchhHHHHHHHHhhCCcHHHHHHHHHhcCccch-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999997532200 00011111111111100000000
Q ss_pred -------HHhccCcchh-------hhhc---------CCCcccCC---------------CcHHHHHHHHHHh-------
Q 040956 672 -------HKEGHIIPSL-------SRIF---------KPPIFDGS---------------DGLDKFLTQFEAA------- 706 (1085)
Q Consensus 672 -------~~~~~~i~~l-------~~~~---------~~~~l~~~---------------~~l~~~l~~~e~~------- 706 (1085)
.......+.+ ...+ .++...+. +.+..++.++...
T Consensus 668 ~~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c~si~ 747 (1125)
T KOG0217|consen 668 GEGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGCSSIV 747 (1125)
T ss_pred hHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 0000000000 0000 00000000 0011111111111
Q ss_pred -----------------------------hccCCCcccccccchH--------------HHHHHHHHHHHHHHHHHHHHH
Q 040956 707 -----------------------------IDSDFPDYQNHDVTDL--------------DAETLSILIELFIEKASQWSE 743 (1085)
Q Consensus 707 -----------------------------i~~~~~~~~~~~i~~~--------------~~~~l~~l~~~~~~~~~~~~~ 743 (1085)
-.+.+.+|.++++... .....++++.+|.+++..|++
T Consensus 748 ~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~ 827 (1125)
T KOG0217|consen 748 FVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQA 827 (1125)
T ss_pred EeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 1123456666554332 123346778889999999999
Q ss_pred HHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecC-CCCcccccccccCCCCCC
Q 040956 744 VIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDD 822 (1085)
Q Consensus 744 ~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~-~~~~~V~ndisL~~~~~~ 822 (1085)
++.+++.||||+|+|.+|....+++|||+++.... ..+.+.++.++|||+... .++.|||||+.++...
T Consensus 828 tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d--------t~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~-- 897 (1125)
T KOG0217|consen 828 TVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD--------TPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGAE-- 897 (1125)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccceeecccC--------CCceeEEecccCceeecCcCCCccccchhhccccc--
Confidence 99999999999999999998889999999985432 224899999999998653 3467999999998542
Q ss_pred CCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC
Q 040956 823 CLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 823 ~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a 902 (1085)
.....++|||||+|||||||++|.++||||+||+|||+.+.++++|+||+|+|+.|+++.|.|||++|+.|++.||..+
T Consensus 898 -e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~a 976 (1125)
T KOG0217|consen 898 -ENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHA 976 (1125)
T ss_pred -cceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhc
Confidence 4556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCc
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQE 982 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~ 982 (1085)
|++||||+||+||||++.||.+||.++|++|....+|..+|+||||.++..+.+||.|.+.||+|.++. +.+
T Consensus 977 T~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~--------e~~ 1048 (1125)
T KOG0217|consen 977 TRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDE--------EID 1048 (1125)
T ss_pred CccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecC--------Ccc
Confidence 999999999999999999999999999999999899999999999999999999999999999999862 337
Q ss_pred EEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 040956 983 LVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027 (1085)
Q Consensus 983 i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~~ 1027 (1085)
++|+|++.+|+|++|||++||+|||+|.+||++|..++.+++...
T Consensus 1049 vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~ 1093 (1125)
T KOG0217|consen 1049 VTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSS 1093 (1125)
T ss_pred EEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875
No 2
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-123 Score=1146.12 Aligned_cols=700 Identities=35% Similarity=0.509 Sum_probs=545.6
Q ss_pred hhccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEecCCCCccccccCccCHHHHHHHHHHcCC
Q 040956 266 ALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGY 345 (1085)
Q Consensus 266 ~~~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~~~g~~~~aGfPe~sl~~y~~kLV~~GY 345 (1085)
.++++||||||||+||++|+|++||||||||||+|++||.++|++|+|++|.| +++||||||+|+++.|+++||++||
T Consensus 2 ~~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r--~~~pm~gvP~h~~~~yl~~li~~g~ 79 (843)
T COG0249 2 SKAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKR--GNIPMAGVPYHALDYYLAKLIELGY 79 (843)
T ss_pred CcccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecC--CCCcCCCCccccHHHHHHHHHhCCC
Confidence 36789999999999999999999999999999999999999999999999976 5699999999999999999999999
Q ss_pred eEEEEeecCChHHHhhccCCCceeeeEEEEecCCccccCCCCC--CCceEEEEeecCCCCCCCCceEEEEEEEcCcceEE
Q 040956 346 KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP--DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVW 423 (1085)
Q Consensus 346 KVAVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~~~~~--~~~yllaI~E~~~~~~~~~~~iGva~vD~STGef~ 423 (1085)
|||||||+|+|..+| ++|+|+|+||+||||++|+.+.. +++|++|+.... +. .||+||+|++||+|+
T Consensus 80 kVAiceQ~e~~~~~k-----~~v~R~v~rv~TpGt~~d~~~l~~~~~n~l~a~~~~~-----~~-~~gla~~dlstGef~ 148 (843)
T COG0249 80 KVAICEQLEDPAEAK-----GVVERKVVRVVTPGTLTDEALLSDRENNYLAALAIDR-----DG-KVGLAFIDLSTGEFF 148 (843)
T ss_pred eEEEEEcccChhhhc-----CcceeEEEEEECCCeeeccccccccccceEEEEEecC-----CC-EEEEEEEEcccCeEE
Confidence 999999999998766 49999999999999999998753 578999997421 12 899999999999999
Q ss_pred EEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCCCC
Q 040956 424 VGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGS 503 (1085)
Q Consensus 424 l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~ 503 (1085)
+.+|. +..|.+.|.+++|+|||++.+..+........ .+.+++.+ .+.|........+ ..+|...
T Consensus 149 ~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~~~~~~~-------~~~~~~~~-~~~f~~~~~~~~l---~~~~~~~ 213 (843)
T COG0249 149 VSEFE----REKLLSELKRLQPKELLLSESLLSSTLAEIQK-------GLFVVRLP-ASFFDEDDAEEIL---SEYFGVR 213 (843)
T ss_pred EEEee----HHHHHHHHHhCCCcEEEeccccCchhhhhhhh-------ceeeeecc-hhhcCccHHHHHH---HHHhCcc
Confidence 99997 77899999999999999998755443221111 11123333 5566554333332 2355433
Q ss_pred CCchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee--------------------e
Q 040956 504 SSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------------Y 563 (1085)
Q Consensus 504 ~~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl--------------------~ 563 (1085)
+.. .+ .......+++|+|+++.|++..+... +.+.....+.....+|.||..|+ +
T Consensus 214 ~l~---~~-~~~~~~~~~~a~~~ll~Y~~~t~~~~-l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ 288 (843)
T COG0249 214 DLD---GF-GLISTPLALSAAGALLSYLKDTQKTF-LPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWL 288 (843)
T ss_pred ccc---cc-ccccchHHHHHHHHHHHHHHHhhhcc-ccccccceeeccCcEEEEcHHHHhcccccccCCCCCCCCcHHHH
Confidence 210 00 12235788999999999997655333 22322222333356788887766 9
Q ss_pred cccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhccc-------
Q 040956 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSC------- 636 (1085)
Q Consensus 564 Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~------- 636 (1085)
||+|+|+||+|+|++||++||+|.+.|+.|||+|++|..+..++..++..|+++||+||+++|+.........
T Consensus 289 ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~ 368 (843)
T COG0249 289 LDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRASPRDLLRLRDS 368 (843)
T ss_pred hccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCCCChhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999753211000
Q ss_pred -chhhHHH----------------H---------HH---HHHH--------HHHHHHHHHHHHHHHHHHHHHH-------
Q 040956 637 -IVLPLIG----------------K---------KV---LKQQ--------VKVFGSLVKGLRIAMDLLMLMH------- 672 (1085)
Q Consensus 637 -~~l~~l~----------------~---------~~---l~~~--------i~~~~~l~~~l~~~~d~l~~l~------- 672 (1085)
...|.+. . .+ +... +.+ +.+..|+...+|.+..+.
T Consensus 369 l~~~~~i~~~l~~~~~~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~-~ii~~g~~~eLd~lr~~~~~~~~~i 447 (843)
T COG0249 369 LEKIPEIFKLLSSLKSESDLLLLLEDIESLDYLAELLELLETAINEDPPLAVRD-GIIKEGYNIELDELRDLLNNAKEWI 447 (843)
T ss_pred HHHHHHHHHHHhccccchhhhHHhhhhhccccHHHHHHHHHHHhhhcchhhcch-hHHhcchhHHHHHHHHHHHHHHHHH
Confidence 0000000 0 00 0000 000 112223333333222221
Q ss_pred -------HhccCcchhh----hhcCCCcccCCCcHHHHH-HHHHHhhccCCCcccccccch--------------HHHHH
Q 040956 673 -------KEGHIIPSLS----RIFKPPIFDGSDGLDKFL-TQFEAAIDSDFPDYQNHDVTD--------------LDAET 726 (1085)
Q Consensus 673 -------~~~~~i~~l~----~~~~~~~l~~~~~l~~~l-~~~e~~i~~~~~~~~~~~i~~--------------~~~~~ 726 (1085)
++...+..+. +.+++............- ..+.....++..+|.+.++++ .+.++
T Consensus 448 ~~le~~~r~~~gi~slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l 527 (843)
T COG0249 448 AKLELEERERTGIKSLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYEL 527 (843)
T ss_pred HHHHHHHHHhcCCchhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333322 111111100000000000 012222333445555544433 34556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecCCC
Q 040956 727 LSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENG 806 (1085)
Q Consensus 727 l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~~ 806 (1085)
+..+.+.+..+...++.+..++|+|||++|||..|.. .+||||++.+.. -+.|+++|||+++....
T Consensus 528 ~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~--~~y~rP~~~~~~------------~l~i~~gRHPvvE~~~~ 593 (843)
T COG0249 528 FDELREKILAHINELQALAKALAELDVLSSLAEIAAE--QNYVRPEFVDSN------------DLEIKEGRHPVVEAVLD 593 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCceecCCC------------CEEEEecCcchhhhhcc
Confidence 6778888899999999999999999999999999964 789999998542 29999999999987654
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccc
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGES 886 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~S 886 (1085)
..|||||+.|+. .+++++|||||||||||||||+|+++||||+||||||+.+.++++|+||||+|+.|++..|.|
T Consensus 594 ~~fVpNd~~L~~-----~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~S 668 (843)
T COG0249 594 NGFVPNDIDLSG-----NRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRS 668 (843)
T ss_pred CCcccCceeeCC-----CceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhcccc
Confidence 449999999986 368999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeE
Q 040956 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMA 966 (1085)
Q Consensus 887 tf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~ 966 (1085)
|||+||.|+++||++||++|||||||.|||||++||.+|||++++||.++.+|++||+||||++++.....+.|.|+||+
T Consensus 669 TFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~ 748 (843)
T COG0249 669 TFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMS 748 (843)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEE
Confidence 99999999999999999999999999999999999999999999999997799999999999999998888999999999
Q ss_pred EEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 040956 967 CAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027 (1085)
Q Consensus 967 ~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~~ 1027 (1085)
+.. .++.++|+|++.+|+|.+|||++||++||+|.+||+||++++.++++.-
T Consensus 749 ~~e---------~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~~ 800 (843)
T COG0249 749 AVE---------EGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKES 800 (843)
T ss_pred EEE---------cCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc
Confidence 763 3566999999999999999999999999999999999999999998864
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=2.9e-121 Score=1137.59 Aligned_cols=685 Identities=33% Similarity=0.477 Sum_probs=521.0
Q ss_pred CCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEecCCC---CccccccCccCHHHHHHHHHHcCCe
Q 040956 270 MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISESGIDDAVEKLVARGYK 346 (1085)
Q Consensus 270 ~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~~~g---~~~~aGfPe~sl~~y~~kLV~~GYK 346 (1085)
+||||+|||+||++|||+|||||||||||||++||.++|++|||++|.|+.+ ++||||||+|+++.|+++||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 6999999999999999999999999999999999999999999999987542 4899999999999999999999999
Q ss_pred EEEEeecCChHHHhhccCCCceeeeEEEEecCCccccCCCC--CCCceEEEEeecCCCCCCCCceEEEEEEEcCcceEEE
Q 040956 347 VGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWV 424 (1085)
Q Consensus 347 VAVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~~~~--~~~~yllaI~E~~~~~~~~~~~iGva~vD~STGef~l 424 (1085)
||||||+|||+.+| ++|+||||+||||||++|+++. .+++||+||.+. ...||+||+|+|||+|++
T Consensus 81 Vai~eQ~e~~~~~k-----g~v~Rev~ri~TpGT~~~~~~l~~~~~nyl~ai~~~-------~~~~gla~~D~sTG~~~~ 148 (840)
T TIGR01070 81 VAICEQIEDPKTAK-----GPVEREVVQLITPGTVSDEALLPERQDNLLAAIAQE-------SNGFGLATLDLTTGEFKV 148 (840)
T ss_pred EEEEEecCCchhcC-----CceeeEEEEEECCCcccccccccCCCCceEEEEEeC-------CCeEEEEEEEccccEEEE
Confidence 99999999997544 5999999999999999999875 357899999642 125999999999999999
Q ss_pred EEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCCCCC
Q 040956 425 GTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504 (1085)
Q Consensus 425 ~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~~ 504 (1085)
++|.|+ ..|.+.|.+++|+|||++.+ ++......+. .|+.......+ ..+|...+
T Consensus 149 ~~~~d~---~~l~~~l~~~~P~Eil~~~~-~~~~~~~~~~------------------~f~~~~~~~~l---~~~f~~~~ 203 (840)
T TIGR01070 149 TELADK---ETLYAELQRLNPAEVLLAED-LSEMEAIELR------------------EFRKDTAVMSL---EAQFGTED 203 (840)
T ss_pred EEecCH---HHHHHHHhccCCeEEEEcCC-CChHHHHHhH------------------hcchhHHHHHH---HHhcCccc
Confidence 999875 35889999999999999865 3322211111 12211111111 23454321
Q ss_pred CchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee-------------------ecc
Q 040956 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL-------------------YLD 565 (1085)
Q Consensus 505 ~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl-------------------~Ln 565 (1085)
. ..+ .+.....+++|+|++++||+...... +.+...+.+...+++|.||++|+ +||
T Consensus 204 l---~~~-~~~~~~~~~~a~g~ll~Yl~~~~~~~-~~~~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~~~~gSL~~~ld 278 (840)
T TIGR01070 204 L---GGL-GLRNAPLGLTAAGCLLQYAKRTQRTA-LPHLQPVRLYELQDFMQLDAATRRNLELTENLRGGKQNTLFSVLD 278 (840)
T ss_pred h---hhc-CCCCCHHHHHHHHHHHHHHHHhChhh-hhhCCCcEEECCCCEEEeCHHHHHhccCCccCCCCCCCcHHHHHh
Confidence 1 111 12345678899999999999876433 22222122222367899998776 899
Q ss_pred cCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccc--------
Q 040956 566 SCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCI-------- 637 (1085)
Q Consensus 566 ~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~-------- 637 (1085)
+|+|+||+|+||+||++||+|++.|++|||+|++|.++..++..++..|+++||+||+++|+.........+
T Consensus 279 ~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~ 358 (840)
T TIGR01070 279 ETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALGNARPRDLARLRTSLE 358 (840)
T ss_pred hcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987532110000
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh---ccC--cc---hhhhhcCCCcccC----CCcHHHHHHHHH
Q 040956 638 VLPLIGKKVLKQQ-VKVFGSLVKGLRIAMDLLMLMHKE---GHI--IP---SLSRIFKPPIFDG----SDGLDKFLTQFE 704 (1085)
Q Consensus 638 ~l~~l~~~~l~~~-i~~~~~l~~~l~~~~d~l~~l~~~---~~~--i~---~l~~~~~~~~l~~----~~~l~~~l~~~e 704 (1085)
.++.+.. .+... -..+..+...+....++...+.+. ... +. .++..++ +.+.. ..+...++..++
T Consensus 359 ~~~~l~~-~l~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~-~~Ld~lr~~~~~~~~~l~~l~ 436 (840)
T TIGR01070 359 QLPELRA-LLEELEGPTLQALAAQIDDFSELLELLEAALIENPPLVVRDGGLIREGYD-EELDELRAASREGTDYLARLE 436 (840)
T ss_pred HHHHHHH-HHHhcCcHHHHHHHHhcccHHHHHHHHHHHHhcCCccccccCCeeCCCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 0011100 00000 000000000000000000000000 000 00 0000000 00000 000011111111
Q ss_pred H-------------------------------hhcc---------CCCcccccccc--------------hHHHHHHHHH
Q 040956 705 A-------------------------------AIDS---------DFPDYQNHDVT--------------DLDAETLSIL 730 (1085)
Q Consensus 705 ~-------------------------------~i~~---------~~~~~~~~~i~--------------~~~~~~l~~l 730 (1085)
. .++. ...+|.++++. +.+.+++..+
T Consensus 437 ~~~~~~~~i~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L 516 (840)
T TIGR01070 437 ARERERTGIPTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEEL 516 (840)
T ss_pred HHHHHHcCCCceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0111 11123333222 2234556677
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecCCCCccc
Q 040956 731 IELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPV 810 (1085)
Q Consensus 731 ~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~~~~~V 810 (1085)
.+.+.++...|..+.+.++.|||++|+|.+|.. .+||||++.+. +.+.|+++|||+++...+..||
T Consensus 517 ~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~------------~~i~i~~~RHP~le~~~~~~~V 582 (840)
T TIGR01070 517 RELLKKYLEALQEAARALAELDVLANLAEVAET--LHYTRPRFGDD------------PQLRIREGRHPVVEQVLRTPFV 582 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcCceecCC------------CcEEEEeeECHHHHhccCCCeE
Confidence 788888889999999999999999999999985 68999999753 4699999999998754345799
Q ss_pred ccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhH
Q 040956 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLV 890 (1085)
Q Consensus 811 ~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~ 890 (1085)
|||+.|+. ..++++||||||||||||||++|++++|||+||||||+++.++++|+||+|+|+.|++..|.||||+
T Consensus 583 pNdi~l~~-----~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~ 657 (840)
T TIGR01070 583 PNDLEMAH-----NRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMV 657 (840)
T ss_pred eeeeecCC-----CccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHH
Confidence 99999984 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEe
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~ 970 (1085)
||.+++.||+.++++|||||||+||||++.||.+|+++++++|.+..+|++||+||||++......+++|.++||++..+
T Consensus 658 Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~ 737 (840)
T TIGR01070 658 EMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEH 737 (840)
T ss_pred HHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999856999999999999999888889999999998632
Q ss_pred cCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 040956 971 SNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026 (1085)
Q Consensus 971 ~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~ 1026 (1085)
++.++|+|+|.+|.|++|||++||++||+|++||+||++++++++..
T Consensus 738 ---------~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 738 ---------NGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred ---------CCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999864
No 4
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.8e-120 Score=1136.49 Aligned_cols=697 Identities=33% Similarity=0.461 Sum_probs=531.1
Q ss_pred hccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEecCCC---CccccccCccCHHHHHHHHHHc
Q 040956 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVG---KCRQVGISESGIDDAVEKLVAR 343 (1085)
Q Consensus 267 ~~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~~~g---~~~~aGfPe~sl~~y~~kLV~~ 343 (1085)
.+++||||+|||+||++|||+|||||||||||||++||+++|++|||++|.|+.+ ..||||||+|+++.|+++||++
T Consensus 5 ~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~ 84 (854)
T PRK05399 5 MSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKK 84 (854)
T ss_pred cCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHC
Confidence 4579999999999999999999999999999999999999999999999986433 4699999999999999999999
Q ss_pred CCeEEEEeecCChHHHhhccCCCceeeeEEEEecCCccccCCCCC--CCceEEEEeecCCCCCCCCceEEEEEEEcCcce
Q 040956 344 GYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP--DAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALR 421 (1085)
Q Consensus 344 GYKVAVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~~~~~--~~~yllaI~E~~~~~~~~~~~iGva~vD~STGe 421 (1085)
|||||||||+|||+.+| ++|+|+||+||||||++|+.+.. .++||+||.+. ...||+||+|++||+
T Consensus 85 GyKVaI~EQ~e~~~~~k-----~~v~R~v~~i~TpGT~~~~~~l~~~~~~yl~ai~~~-------~~~~Gia~~D~stg~ 152 (854)
T PRK05399 85 GYKVAICEQVEDPATAK-----GPVKREVVRIVTPGTVTDEALLDEKQNNYLAAIAQD-------GGGYGLAYLDLSTGE 152 (854)
T ss_pred CCEEEEEEecCChhhcC-----CccceEEEEEECCCeeecccccCCCCCcEEEEEEEC-------CCeEEEEEEECCCCe
Confidence 99999999999997654 59999999999999999988743 57899999863 236999999999999
Q ss_pred EEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCC
Q 040956 422 VWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFN 501 (1085)
Q Consensus 422 f~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~ 501 (1085)
|++++| .+++|++.|.+++|+|||++.+..+.. +.... ..+..+. ...|........+ ..+|.
T Consensus 153 ~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~~~----~~~~~-----~~~~~~~-~~~f~~~~~~~~l---~~~f~ 215 (854)
T PRK05399 153 FRVTEL----DEEELLAELARLNPAEILVPEDFSEDE----LLLLR-----RGLRRRP-PWEFDLDTAEKRL---LEQFG 215 (854)
T ss_pred EEEEEE----cHHHHHHHHHhcCCcEEEEcCCcchhh----Hhhcc-----ccceecc-ccccChHHHHHHH---HHHhC
Confidence 999999 467899999999999999987543322 11111 0011111 3355433332222 23554
Q ss_pred CCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee-------------------
Q 040956 502 GSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------------------- 562 (1085)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl------------------- 562 (1085)
..+ . ..+ .. ....+++|+|++++||+.+.... +.+...+.+....++|.||.+|+
T Consensus 216 ~~~--~-~~~-~~-~~~~~~~a~~all~Yl~~~~~~~-~~~~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~~~~~gSL~~ 289 (854)
T PRK05399 216 VAS--L-DGF-GV-DLPLAIRAAGALLQYLKETQKRS-LPHLRSPKRYEESDYLILDAATRRNLELTENLRGGRKNSLLS 289 (854)
T ss_pred cCC--c-ccc-CC-CCHHHHHHHHHHHHHHHHhchhh-hhccCCCEEECCCCEEEcCHHHHHhccCCccCCCCCCCcHHH
Confidence 321 0 011 11 45678999999999999877533 22222122222367888888776
Q ss_pred ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccc-----
Q 040956 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCI----- 637 (1085)
Q Consensus 563 ~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~----- 637 (1085)
+||+|+|+||+|+||+||++||+|+++|++|||+|++|+++..++..++..|+++||+||+++|+.........+
T Consensus 290 ~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~ 369 (854)
T PRK05399 290 VLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGRANPRDLAALRD 369 (854)
T ss_pred HhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999986532110000
Q ss_pred ---hhhHHHHH-------HHHHH---HHHHHHHHHHHHHHHH----------------------HHHHHHHh-ccCcc--
Q 040956 638 ---VLPLIGKK-------VLKQQ---VKVFGSLVKGLRIAMD----------------------LLMLMHKE-GHIIP-- 679 (1085)
Q Consensus 638 ---~l~~l~~~-------~l~~~---i~~~~~l~~~l~~~~d----------------------~l~~l~~~-~~~i~-- 679 (1085)
..+.+... .+... +..+..+.+.+...++ .+....++ ...+.
T Consensus 370 ~l~~~~~l~~~l~~~~~~~l~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~ 449 (854)
T PRK05399 370 SLEALPELKELLAELDSPLLAELAEQLDPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLAEL 449 (854)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHhhcccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00111000 00000 0011111111111111 00000000 00000
Q ss_pred --hhhhhcCCCccc-------------CCCcHHHHHHHHH-HhhccCCCcccccccc--------------hHHHHHHHH
Q 040956 680 --SLSRIFKPPIFD-------------GSDGLDKFLTQFE-AAIDSDFPDYQNHDVT--------------DLDAETLSI 729 (1085)
Q Consensus 680 --~l~~~~~~~~l~-------------~~~~l~~~l~~~e-~~i~~~~~~~~~~~i~--------------~~~~~~l~~ 729 (1085)
.+.+.++++.+. .......+-..+. ..-.+...+|.++++. +.+.+++..
T Consensus 450 ~~~~~~~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~ 529 (854)
T PRK05399 450 EARERERTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEE 529 (854)
T ss_pred HHHHHHHcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111100 0000000000000 0001122234433322 233456677
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecC-CCCc
Q 040956 730 LIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGL 808 (1085)
Q Consensus 730 l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~-~~~~ 808 (1085)
+.+.+.++...|..+.+.+++||||+|+|.+|.. .+||||++.+. +.+.|+++|||+++.. .+..
T Consensus 530 l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~------------~~l~i~~~rHP~le~~~~~~~ 595 (854)
T PRK05399 530 LREEVAEHIERLQKLAKALAELDVLASLAEVAEE--NNYVRPEFTDD------------PGIDIEEGRHPVVEQVLGGEP 595 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCccccEEeCC------------CCEEEEeccCcEEecccCCCc
Confidence 8888889999999999999999999999999985 68999999853 4699999999999764 3467
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchh
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTF 888 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf 888 (1085)
|||||+.|+. .+++++||||||||||||||++|++++|||+||||||+++.++++|+||+|+|+.|++..|.|||
T Consensus 596 ~vpnd~~l~~-----~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF 670 (854)
T PRK05399 596 FVPNDCDLDE-----ERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTF 670 (854)
T ss_pred eEecceeeCC-----CCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccH
Confidence 9999999984 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEE
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~ 968 (1085)
|+||.+++.||+.++++||||||||||||++.||.+++++++++|.+..+|++||+|||+++......+++|.++||.+.
T Consensus 671 ~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~ 750 (854)
T PRK05399 671 MVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVK 750 (854)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEE
Confidence 99999999999999999999999999999999999999999999998767999999999999988888899999999987
Q ss_pred EecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 040956 969 FKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026 (1085)
Q Consensus 969 ~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~ 1026 (1085)
. .++.++|+|+|.+|+|++||||+||++||+|++||+||+++++++++.
T Consensus 751 ~---------~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~~ 799 (854)
T PRK05399 751 E---------HGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESA 799 (854)
T ss_pred E---------eCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2 257899999999999999999999999999999999999999999863
No 5
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-110 Score=957.16 Aligned_cols=730 Identities=29% Similarity=0.420 Sum_probs=546.7
Q ss_pred ccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEecCCCCccccccCccCHHHHHHHHHHcCCeE
Q 040956 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKV 347 (1085)
Q Consensus 268 ~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~~~g~~~~aGfPe~sl~~y~~kLV~~GYKV 347 (1085)
+++||+++||.++|++|+|+||..+||+.|.+|++||+||+++|||.+..- .++..|.||.++++.|++|||++||||
T Consensus 160 s~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~d--hnFmtaS~P~~Rl~vHleRLv~~g~KV 237 (1070)
T KOG0218|consen 160 SKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHND--HNFMTASFPDVRLNVHLERLVHHGLKV 237 (1070)
T ss_pred cccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEec--cceeeccCCcchhhHHHHHHHhcCceE
Confidence 479999999999999999999999999999999999999999999987642 478889999999999999999999999
Q ss_pred EEEeecCChHHHhhc-cCCCceeeeEEEEecCCccccCC---------CCCCCceEEEEeecCCC--CCCCCceEEEEEE
Q 040956 348 GRIEQLETSEQAKAR-HTNSVISRKLVNVVTPSTTVDGT---------IGPDAVHLLAIKEGNCG--PDNGSVVYGFAFV 415 (1085)
Q Consensus 348 AVVEQ~Et~~~~k~r-~~~~vv~Rev~~V~TpGT~~d~~---------~~~~~~yllaI~E~~~~--~~~~~~~iGva~v 415 (1085)
|||+|+||++.++-. ++++++.|+|++|||+||+.++. .+..++|++|+.++... ...+...+|+.-|
T Consensus 238 aVVkQtETAAiKs~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ksg~v~vgligV 317 (1070)
T KOG0218|consen 238 AVVKQTETAAIKSHGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSKEKSGVVKVGLIGV 317 (1070)
T ss_pred EEEeehhhHHHHhcCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhhhhcCceEEEEEEE
Confidence 999999999865421 23679999999999999998653 12346799999874321 1235678999999
Q ss_pred EcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHH
Q 040956 416 DCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQ 495 (1085)
Q Consensus 416 D~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~ 495 (1085)
.++||++.+.+|.|+..++.|++.|..++|.|+|++. .+++++...|.+-. ..++.. ....|.-...+...+.
T Consensus 318 qlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~-~ls~qt~all~~~~---Vsve~~---~~rv~r~~naV~q~ik 390 (1070)
T KOG0218|consen 318 QLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNT-DLSPQTVALLFKDN---VSVELI---HKRVYRLENAVVQAIK 390 (1070)
T ss_pred ecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCC-CCcHHHHHHHHhcc---cchhhh---hhhhhhchhHHHHHHH
Confidence 9999999999999999999999999999999999985 57888876665311 111111 0111211111111111
Q ss_pred -----HcccCCCCCC-chhhhhhhhcC--chhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee-----
Q 040956 496 -----LNGYFNGSSS-PWSKALENVMQ--HDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL----- 562 (1085)
Q Consensus 496 -----~~~~f~~~~~-~~~~~l~~~~~--~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl----- 562 (1085)
..++|....- .-...+..+++ +...++.++.+++||+++++++++....+........+|.++++||
T Consensus 391 la~e~~q~f~~~k~~l~gs~ii~li~nl~~psvic~la~~is~lkefnlE~~l~~psf~s~~ss~e~Mtls~ntLq~Lei 470 (1070)
T KOG0218|consen 391 LANEKIQNFEDDKEMLEGSEIICLIMNLSHPSVICLLAKLISHLKEFNLEQVLLIPSFYSPFSSKEHMTLSPNTLQSLEI 470 (1070)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHhchHHheecccccCcccccceeeechhhhhceee
Confidence 1223322110 00112222333 2335555999999999999999877666554444456799999888
Q ss_pred ---------------ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH---hCcHHHHHHHHHhcCCCCHHHHH
Q 040956 563 ---------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM---KNSEVVMVVAQYLRKLPDLERLL 624 (1085)
Q Consensus 563 ---------------~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~---~~~~~~~~l~~~L~~lpDlERll 624 (1085)
+||||.|.||.||||.|+.+||+|...|++|+|||+++. ++..+...+++.|.++|||+|-+
T Consensus 471 f~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~vf~si~~~l~rlpDl~rgL 550 (1070)
T KOG0218|consen 471 FTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIVFESINQMLNRLPDLLRGL 550 (1070)
T ss_pred eeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCcHhHhhH
Confidence 999999999999999999999999999999999999993 34457889999999999999999
Q ss_pred HHHhhhhhhcccchhhHHHHHHHHHHHHHHHH--------------------HHHHHHHHH----------HHHHHHHHh
Q 040956 625 GRVKARVQASSCIVLPLIGKKVLKQQVKVFGS--------------------LVKGLRIAM----------DLLMLMHKE 674 (1085)
Q Consensus 625 ~ri~~~~~~~~~~~l~~l~~~~l~~~i~~~~~--------------------l~~~l~~~~----------d~l~~l~~~ 674 (1085)
+||....+....-....+ +.+.. ..+.|.. ++..+-..+ ..|..+...
T Consensus 551 ~rIy~~tCtp~~eff~vl-k~iy~-a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~ 628 (1070)
T KOG0218|consen 551 NRIYYGTCTPRKEFFFVL-KQIYS-AVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVS 628 (1070)
T ss_pred HHHhcccCCcHHHHHHHH-HHHHH-HHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccccccHHHHHHHhhHH
Confidence 999764322111000000 00000 0000000 000000000 000000000
Q ss_pred ----ccCcchhhhhcCCCcccCCCc--------------HHHHHHHHHHh---------------------------hcc
Q 040956 675 ----GHIIPSLSRIFKPPIFDGSDG--------------LDKFLTQFEAA---------------------------IDS 709 (1085)
Q Consensus 675 ----~~~i~~l~~~~~~~~l~~~~~--------------l~~~l~~~e~~---------------------------i~~ 709 (1085)
......+....++|.+....+ +++-+.++++. ++.
T Consensus 629 aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiRk~Lk~pnlef~~vsgv~flIEvkns~~kkiP~ 708 (1070)
T KOG0218|consen 629 AAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIRKYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPD 708 (1070)
T ss_pred HHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCeeEEEEecccccccCCc
Confidence 000011111111222111111 11111222211 111
Q ss_pred CC---------CcccccccchHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCC
Q 040956 710 DF---------PDYQNHDVTDLD--------------AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSG 766 (1085)
Q Consensus 710 ~~---------~~~~~~~i~~~~--------------~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~ 766 (1085)
+| .||.++.+.... ......+.++|.+++..++.+...+|.+||+.|||..+. +.
T Consensus 709 dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~--n~ 786 (1070)
T KOG0218|consen 709 DWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSC--NV 786 (1070)
T ss_pred cceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cC
Confidence 22 245554443211 112345678889999999999999999999999999997 48
Q ss_pred CcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhh
Q 040956 767 AMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 767 ~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
+||||+|+++. ..|.|+++|||+++...++.|||||+.|..+ .+++.+||||||||||+|+||+|
T Consensus 787 nYvRPtfvd~~-----------~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~e----gerc~IITGPNMGGKSsyIrQvA 851 (1070)
T KOG0218|consen 787 NYVRPTFVDGQ-----------QEIIIKNGRHPVIESLLVDYFVPNDIMLSPE----GERCNIITGPNMGGKSSYIRQVA 851 (1070)
T ss_pred CccCcccccch-----------hhhhhhcCCCchHHHHhhhccCCCcceecCC----CceEEEEeCCCCCCchHHHHHHH
Confidence 99999998653 2488999999999865567799999999976 67899999999999999999999
Q ss_pred hHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 040956 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926 (1085)
Q Consensus 847 ~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia 926 (1085)
++.||||+||||||+.+.++++|.||+|||+.|++..|.||||+||.+++.||+.|+.+|||||||+||||++.||.||+
T Consensus 852 LitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIs 931 (1070)
T KOG0218|consen 852 LITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAIS 931 (1070)
T ss_pred HHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEEechhHHHhhcCcc-ceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHH
Q 040956 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHP-HVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVM 1005 (1085)
Q Consensus 927 ~avle~L~~~~~~tiL~aTH~~el~~~~~~~~-~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~l 1005 (1085)
+|+++|+.+...|.+||+|||+.+++.-...| .|.++||++....... ..+-+.++|+|||++|.|.+|||++||+|
T Consensus 932 YAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~--~~d~dsVtfLYklvrGlasrSyGlnVAkl 1009 (1070)
T KOG0218|consen 932 YATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKT--GEDWDSVTFLYKLVRGLASRSYGLNVAKL 1009 (1070)
T ss_pred HHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeecccc--CCCchhhhhHHHHhhhhhhccccccHHHH
Confidence 99999999998999999999999988766554 5899999987622111 12357899999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q 040956 1006 AGVPQKVVEAASHAALAMKKSI 1027 (1085)
Q Consensus 1006 aGlP~~vi~rA~~~~~~l~~~~ 1027 (1085)
|++|.+||+||-.+++++|.+.
T Consensus 1010 A~ip~sii~rA~siSeeleke~ 1031 (1070)
T KOG0218|consen 1010 ARIPKSIINRAFSISEELEKES 1031 (1070)
T ss_pred hCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.5e-76 Score=685.17 Aligned_cols=707 Identities=29% Similarity=0.475 Sum_probs=490.3
Q ss_pred hhccCCHHHHHHHHHhhhC---CCeEEEEeeCCeEEEehhhHHHHhhcccc-----E-EEecCCCCccccccCccCHHHH
Q 040956 266 ALKKMSASQKQYWNVKSQY---MDVLLFFKVGKFYELYELDAEIGHKELDW-----K-ITLSGVGKCRQVGISESGIDDA 336 (1085)
Q Consensus 266 ~~~k~TP~~kQyweIK~k~---~D~VLFFkvGkFYEly~~DA~iaak~L~L-----~-lT~~~~g~~~~aGfPe~sl~~y 336 (1085)
...+-+.+.+-|..+=+.. -++|-||-.|+||-.|++||..+++.--- + |..-+..++..+.+.-..|+..
T Consensus 8 ~~~~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~ 87 (902)
T KOG0219|consen 8 TLGKDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKV 87 (902)
T ss_pred hhcccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHH
Confidence 3445566777777764433 38999999999999999999999874321 1 1000122445577788889999
Q ss_pred HHHHH-HcCCeEEEEeecCChHHHhhccCCCceeeeEEEEecCCccccCC-CCCCCceE------EEEeecCCCCCCCCc
Q 040956 337 VEKLV-ARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGT-IGPDAVHL------LAIKEGNCGPDNGSV 408 (1085)
Q Consensus 337 ~~kLV-~~GYKVAVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~~-~~~~~~yl------laI~E~~~~~~~~~~ 408 (1085)
++.|+ ..+|+|-+.+=-| -+|+++.==+||.+.+-. +.-.++|. +.++-. ...+..
T Consensus 88 vr~~l~~~~~~Ve~y~~~~-------------~~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~---~~~~~~ 151 (902)
T KOG0219|consen 88 VRELLLVLRYRVEVYSSNQ-------------GDWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHP---GVDGQR 151 (902)
T ss_pred HHHHHHHhccceEEeecCc-------------cceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEee---ccCCCc
Confidence 99955 8999998885332 257777778999886521 11112221 111111 113567
Q ss_pred eEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchH
Q 040956 409 VYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDAS 488 (1085)
Q Consensus 409 ~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~ 488 (1085)
.+|+|++|++.-.+++++|.||+.+++|+..+.++.|+|+|++.+ .+..-.+.++... ....+.++... ..+|.+..
T Consensus 152 ~vgv~~~d~~~~k~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~-~~~~~~~kl~~~~-~r~g~~~t~~~-~~e~~~kd 228 (902)
T KOG0219|consen 152 RVGVAFVDTINVKIGLSEFVDDDSFSNLEALLIQLGPKECVLPEG-SVAGEMKKLRNII-DRCGVLITLRK-KSESSWKD 228 (902)
T ss_pred eeEEEEechhheeeehhhhcCcHHHHHHHHHHHhcCCeEEEecCc-ccchHHHHHHHHH-hccCeEEEEec-ccchhHHH
Confidence 899999999999999999999999999999999999999999943 3333334455554 22233333333 45555443
Q ss_pred HHHHHHHHcccCCCCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee------
Q 040956 489 EVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL------ 562 (1085)
Q Consensus 489 ~~~~l~~~~~~f~~~~~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl------ 562 (1085)
-+..+... ..... . ...+. -..+..+++++.+++.|+.-..-.......++..+. ....|.+|..++
T Consensus 229 v~~~l~~~---l~~~~-~-~~~~~-e~~~q~a~~~~~~~i~yl~~~~e~~~s~~~ei~~~~-~~~~m~ld~~av~alnlf 301 (902)
T KOG0219|consen 229 VEQDLNRL---LKSQE-H-AAYLP-ELELQLAMSALSALIKYLDLENEYSNSGKYELTNHG-LHQFMRLDSAAVRALNLF 301 (902)
T ss_pred HHHHHHhc---ccchh-h-hccch-HHHhHHHHHHHHHHHHHHhhcccccccceEEEeecc-hHHHhhHHHHHHHHHhhc
Confidence 33332211 11100 0 00011 123567889999999999432211111111111111 123455554433
Q ss_pred ----------------ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHH-HHhcCCCCHHHHHH
Q 040956 563 ----------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVA-QYLRKLPDLERLLG 625 (1085)
Q Consensus 563 ----------------~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~-~~L~~lpDlERll~ 625 (1085)
+||||.|++|.|||++|+.+||+++..|++|+|.|+.|+.+.+.++.++ +.|..+||+-|+..
T Consensus 302 ~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~pdi~rl~~ 381 (902)
T KOG0219|consen 302 PLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQKLRDDLLRRIPDISRLAR 381 (902)
T ss_pred CCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHhhcChhHHHhhh
Confidence 8999999999999999999999999999999999999999999998886 67899999999999
Q ss_pred HHhhh-hhhc-----ccchhhHHHHHH----------HHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhc
Q 040956 626 RVKAR-VQAS-----SCIVLPLIGKKV----------LKQ----QVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIF 685 (1085)
Q Consensus 626 ri~~~-~~~~-----~~~~l~~l~~~~----------l~~----~i~~~~~l~~~l~~~~d~l~~l~~~~~~i~~l~~~~ 685 (1085)
++... ++.. ....+|.+...+ +.. ..+.+......+...+|+.... ..+..+. ..|
T Consensus 382 ~l~~~~L~d~~r~yq~~~~l~~~~~~l~~~~~~~~~ll~~~l~~~~~~~~kf~~~ve~t~D~da~e-e~ey~VR---~eF 457 (902)
T KOG0219|consen 382 RLMKANLQDVNRIYQAAKLLPTVVQVLISLSESHNRLLKSPLTEHLKKLEKFQEMVETTVDLDAEE-ENEYRVR---VDF 457 (902)
T ss_pred hhhhcchHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhHhHHh-cCcEEEe---ccc
Confidence 87521 1100 011111111100 000 0001111111111122211100 0000000 000
Q ss_pred CCCcccCCCcHHHHHHHHHHh-----------------------------------------hc--cCCC---------c
Q 040956 686 KPPIFDGSDGLDKFLTQFEAA-----------------------------------------ID--SDFP---------D 713 (1085)
Q Consensus 686 ~~~~l~~~~~l~~~l~~~e~~-----------------------------------------i~--~~~~---------~ 713 (1085)
+ +.+ ..+.+.+.+++.. +. ++|. .
T Consensus 458 d-eeL---~eLrq~LdeL~~~m~~~hkrv~~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~ 533 (902)
T KOG0219|consen 458 D-EEL---QELREKLDELERKMEKLHKKVSADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVK 533 (902)
T ss_pred C-HHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEE
Confidence 0 000 0011111111100 00 0110 1
Q ss_pred cccccc--------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCC
Q 040956 714 YQNHDV--------------TDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKN 779 (1085)
Q Consensus 714 ~~~~~i--------------~~~~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~ 779 (1085)
|.+..+ .+.+.++.++++..-..+.+-+..+...+|.|||+.|||.+|.....+|+||.+.+.+.
T Consensus 534 FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs- 612 (902)
T KOG0219|consen 534 FTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGS- 612 (902)
T ss_pred EEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccch-
Confidence 111111 11112222333332223334567788889999999999999987778999999987653
Q ss_pred CcccCCCCCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccc
Q 040956 780 PAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP 859 (1085)
Q Consensus 780 ~~~~~~~~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VP 859 (1085)
..+.+++.|||+++......|||||+.|... ++++++|||||||||||++|+.|.+++|||||||||
T Consensus 613 ---------~rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~----~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVP 679 (902)
T KOG0219|consen 613 ---------KRLELKQSRHPVLEGQDEIPFIPNDVVLEKG----KCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVP 679 (902)
T ss_pred ---------hHHHHHhcccchhhccccCCCCCCccccccC----CceEEEEeCCCcCccchhhhhhhHHHHHHHhCCcee
Confidence 2689999999999887667899999999865 678999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 040956 860 CEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939 (1085)
Q Consensus 860 a~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~ 939 (1085)
|+.+.++++|.|++|.|+.|....|.||||+||.+++.|++.++++||||+|||||||+++||..+||++-+|++.+.+|
T Consensus 680 ce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~c 759 (902)
T KOG0219|consen 680 CESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGC 759 (902)
T ss_pred hhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 040956 940 RLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019 (1085)
Q Consensus 940 tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~ 1019 (1085)
.+||+||+|+++.+...++.|.+.||.+.++ ++.++.+|++.+|+|..||||+||+++|+|+.||+.|+.+
T Consensus 760 f~lfATHfhElt~lae~~~~vKn~h~~a~i~---------~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~ 830 (902)
T KOG0219|consen 760 FCLFATHFHELTKLAEQLPTVKNLHVTAQIE---------NDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQK 830 (902)
T ss_pred hHHHHhHHHHHHhhhhhhhhhhhheeeeEec---------CcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHH
Confidence 9999999999999988899999999999874 5779999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 040956 1020 ALAMKKSIGE 1029 (1085)
Q Consensus 1020 ~~~l~~~~~~ 1029 (1085)
+.++++....
T Consensus 831 ~~ele~~~~~ 840 (902)
T KOG0219|consen 831 AEELEDELVI 840 (902)
T ss_pred HHHHHHHHhh
Confidence 9999887644
No 7
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-63 Score=571.34 Aligned_cols=643 Identities=24% Similarity=0.350 Sum_probs=441.6
Q ss_pred eEEEEeecCCCCCCCCceEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhh-cCC
Q 040956 392 HLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFS-AGS 470 (1085)
Q Consensus 392 yllaI~E~~~~~~~~~~~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~-~~~ 470 (1085)
.++++.|..+. ....+|+|.+|+.++++++++|.|+..|.++.+.+.-+.|-||+++....-....+++-... ...
T Consensus 105 v~~~v~e~r~~---~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~~~e~~ 181 (867)
T KOG0220|consen 105 VIVAVVEGRGL---ARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTLITENF 181 (867)
T ss_pred eEEEEEecCCc---ccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHHHhhcc
Confidence 47788887643 34589999999999999999999999999999999999999999998766555555443332 222
Q ss_pred CceEeeecCcccccCchHHHHHHHHHcccCCCCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCC-ccccc
Q 040956 471 AALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGD-ILPYK 549 (1085)
Q Consensus 471 ~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~~~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~-~~~~~ 549 (1085)
..+.++... .+.|+...+... +.. .++. ....+++.++++..+++|+++++.|+..... ....... .+.+.
T Consensus 182 ~~v~~~~~s-~k~fns~~gl~~-i~~-~~~~----~~s~vle~i~~k~~al~a~a~llky~~~~~~-~~~~~~slri~~~ 253 (867)
T KOG0220|consen 182 KNVNFTTIS-RKYFNSTKGLEY-IEQ-LCIA----EFSTVLEEIQSKTYALGAAAALLKYVEEIQS-SVYAPKSLRICFQ 253 (867)
T ss_pred cccceeehh-hhhcCchhhHHH-HHH-HHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccceeEEEee
Confidence 233344443 566765444332 221 1222 2334677788899999999999999987543 1111100 01111
Q ss_pred ccccccccc-----------------ccee--ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHH
Q 040956 550 VYRDCLRMD-----------------GQTL--YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVV 610 (1085)
Q Consensus 550 ~~~~~m~lD-----------------~~Tl--~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l 610 (1085)
.+...+.|| +.++ ++|+|.|++|.|.||..+++||+|...|+.|++++++|..++++...+
T Consensus 254 gs~nT~~id~~~~~~lelV~~~~~kn~~~l~~vl~~T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~L 333 (867)
T KOG0220|consen 254 GSENTAMIDSSSAQSLELVINNQYKNNHTLFGVLNYTKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGL 333 (867)
T ss_pred cccceeeeecccccceEEechhhhhcccceeeeeeeeecccchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhh
Confidence 122222233 3344 999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHhhhh-----hhcccchh--hHHH----------HHHHHH---H---------HHHHHHHHHHH
Q 040956 611 AQYLRKLPDLERLLGRVKARV-----QASSCIVL--PLIG----------KKVLKQ---Q---------VKVFGSLVKGL 661 (1085)
Q Consensus 611 ~~~L~~lpDlERll~ri~~~~-----~~~~~~~l--~~l~----------~~~l~~---~---------i~~~~~l~~~l 661 (1085)
+..+++.+|+++++++.-... ......+. ..+. ..+... . .+.+..+.+++
T Consensus 334 r~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~~s~~~~e~~~~~~~~r~~~i~~~i 413 (867)
T KOG0220|consen 334 RSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKINNLIYLKHTLELVDPLKIALKNCNSNLLREYYGSFKDKRFGIILEKI 413 (867)
T ss_pred HHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999998863211 10000000 0000 000000 0 00111122222
Q ss_pred HHHHHH-----------------------------HHHHH----H-hccCcchhhhhcCCCcccCCCcHHHHHHHH----
Q 040956 662 RIAMDL-----------------------------LMLMH----K-EGHIIPSLSRIFKPPIFDGSDGLDKFLTQF---- 703 (1085)
Q Consensus 662 ~~~~d~-----------------------------l~~l~----~-~~~~i~~l~~~~~~~~l~~~~~l~~~l~~~---- 703 (1085)
...++. ..... + ....++.+.+.+.++.....+....|...+
T Consensus 414 ~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~~nl~~~f~sarGF~~ri~~~~ 493 (867)
T KOG0220|consen 414 KEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFSLNLRLSFSSARGFFIRITTDC 493 (867)
T ss_pred HHHhhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccEEEEeeccc
Confidence 211110 00000 0 000111111111111000000000000000
Q ss_pred ----HHhhc---------cCCCcccccc-------cchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 040956 704 ----EAAID---------SDFPDYQNHD-------VTDLD-------AETLSILIELFIEKASQWSEVIHAISCIDVLRS 756 (1085)
Q Consensus 704 ----e~~i~---------~~~~~~~~~~-------i~~~~-------~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~S 756 (1085)
...++ .++.++.+.+ ++... ..++..+++.+.++.+.+..+.++++.||+|+|
T Consensus 494 ~~~~~~~lP~~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~s 573 (867)
T KOG0220|consen 494 IALPSDTLPSEFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCS 573 (867)
T ss_pred cccccccCchhhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 00000 0011111111 11111 123445666777888889999999999999999
Q ss_pred HHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCC
Q 040956 757 FAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMG 836 (1085)
Q Consensus 757 lA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgs 836 (1085)
||..... ..||+|++.+ .+-|+++|||+++....+++|-||..++.. .++.+||||||+
T Consensus 574 fa~~~~~--~~y~~P~fT~--------------slaI~qGRHPILe~i~~ek~i~N~t~~t~~-----s~f~IITGPNMs 632 (867)
T KOG0220|consen 574 FAHACTL--SDYVRPEFTD--------------SLAIKQGRHPILEKISAEKPIANNTYVTEG-----SNFLIITGPNMS 632 (867)
T ss_pred HHHhhcc--ccccccccCC--------------ceeeccCCCchhhhhcccCcccCcceeecc-----cceEEEECCCCC
Confidence 9988775 4899999973 389999999999887777899999999864 479999999999
Q ss_pred CcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCC
Q 040956 837 GKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 837 GKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrG 916 (1085)
||||||||+|+++|||||||||||..+.+++|++||+|||..|++..+.|+|+.||.++|.|++.++.+|||+|||+|||
T Consensus 633 GKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~ 712 (867)
T KOG0220|consen 633 GKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRG 712 (867)
T ss_pred cchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCC-C
Q 040956 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGAC-P 995 (1085)
Q Consensus 917 Ts~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~-~ 995 (1085)
||+.||.+|+||+.|++++- .+.++++||+.+++......|.|.++||-+..+. +......|+|..|.. .
T Consensus 713 TSteeGiaityAvCE~lL~L-kayTflATHFldIa~lan~~paVdnlHF~~q~~e--------Nssk~~k~kLsrg~~~~ 783 (867)
T KOG0220|consen 713 TSTEEGIAITYAVCEYLLSL-KAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDE--------NSSKNKKYKLSRGLTEE 783 (867)
T ss_pred CccccchhhHHHHHHHHHHh-hHhHHHHHHHHHHHHHhhcCccccceeeeeeecc--------cchhhhhhhhhhhhhhc
Confidence 99999999999999999985 8899999999999999999999999999887542 222223699999986 5
Q ss_pred CchHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcccccch-h--hhhhhhhHHHHHHHHHHhhcccccCCCChhhHHHHHH
Q 040956 996 ESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESFKSS-E--QRSEFSSLHEEWLKTIVNVSRVDCNSDDDDAYDTLFC 1072 (1085)
Q Consensus 996 ~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1085)
.-||+++|++.-+|.+|++.|+.++.++..+.....+.. + .+.....+ -..+.+ . .... ......+++.+
T Consensus 784 ~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~v~~~~rd~~~~~rq~~Vy~~----a~~~~~-t-~gn~-~e~~~~~klk~ 856 (867)
T KOG0220|consen 784 KNYGLKAAEVSSLPDSIVEDAKEITTQITAQILQNQRDTPEMERQRAVYHL----ATRLVQ-T-AGNS-DEDSLRIKLKN 856 (867)
T ss_pred ccccceEEEEecCCHHHHHhhhHHHHHHHHHHHhhccCchHHHHHHHHHHH----HHHHHH-h-hCCC-CcHHHHHHHHH
Confidence 699999999999999999999999999887765443322 1 11212221 122221 1 1111 34566677777
Q ss_pred HHHHHHhhhc
Q 040956 1073 LWHELKNSYQ 1082 (1085)
Q Consensus 1073 ~~~el~~~~~ 1082 (1085)
+...++..+.
T Consensus 857 l~k~~ve~~~ 866 (867)
T KOG0220|consen 857 LKKKYKEDFP 866 (867)
T ss_pred HHHHHHhhcc
Confidence 7776666553
No 8
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=7e-55 Score=494.12 Aligned_cols=475 Identities=28% Similarity=0.472 Sum_probs=346.2
Q ss_pred chhHHHHHHHHHHHHHHhccccccccCCcc------ccccccccccccccee---------------------------e
Q 040956 517 HDIGFSALGGLISHLSRLMLDDVLRNGDIL------PYKVYRDCLRMDGQTL---------------------------Y 563 (1085)
Q Consensus 517 ~~~al~Alg~ll~YL~~~~l~~~l~~~~~~------~~~~~~~~m~lD~~Tl---------------------------~ 563 (1085)
.+.+..|+|+++.++.+.++...+....+. .+.....-|.+|-+|+ +
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~~v~~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l 272 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDYNVSVPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLFGL 272 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccccccccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHHHH
Confidence 457789999999999876543222111110 1111234455666655 9
Q ss_pred cccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHh--CcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccch--h
Q 040956 564 LDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMK--NSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIV--L 639 (1085)
Q Consensus 564 Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~--~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~~--l 639 (1085)
+|+|.+..|+|+||.|+.+|++|..+|..||++|++|+. |.++.+.+.+.|+++||+--++.|++++...-..+. .
T Consensus 273 ~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t~l~~W~~~~ 352 (849)
T KOG0221|consen 273 LNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHTKLSDWQVLY 352 (849)
T ss_pred HHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCceechHHHHH
Confidence 999999999999999999999999999999999999985 567888999999999999999999876432100000 0
Q ss_pred hHHHHHH-HHHHH------------------HHHHHHH---------------------HHHHHHHHHHHHHHHhccCcc
Q 040956 640 PLIGKKV-LKQQV------------------KVFGSLV---------------------KGLRIAMDLLMLMHKEGHIIP 679 (1085)
Q Consensus 640 ~~l~~~~-l~~~i------------------~~~~~l~---------------------~~l~~~~d~l~~l~~~~~~i~ 679 (1085)
..+...+ +.+.+ ..+..+. .|+...+|..+.. -..++
T Consensus 353 stv~~~~~i~~~~rslp~s~~~~~~~~~~~~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~---y~~lp 429 (849)
T KOG0221|consen 353 STVYSALGIRDACRSLPQSIQLFRDIAQEFSDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRR---YMGLP 429 (849)
T ss_pred HHHHHHHHHHHHHHhCccchhhhhHHHHHHHHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHH---Hccch
Confidence 0010000 00000 0000000 0111111111110 00000
Q ss_pred hh----h-h-------------hcCCCcc---------cC-------CCcHHHHHHHHHHhhccCCCccccc--------
Q 040956 680 SL----S-R-------------IFKPPIF---------DG-------SDGLDKFLTQFEAAIDSDFPDYQNH-------- 717 (1085)
Q Consensus 680 ~l----~-~-------------~~~~~~l---------~~-------~~~l~~~l~~~e~~i~~~~~~~~~~-------- 717 (1085)
.+ . + .+.+|.+ .+ ..+++.... ..+--+|++.
T Consensus 430 ~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~------s~E~l~~rnart~eLD~~ 503 (849)
T KOG0221|consen 430 SFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFL------SEEKLHYRNARTKELDAL 503 (849)
T ss_pred HHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhc------ccceeEeecccHHhHHHH
Confidence 00 0 0 0000100 00 000000000 0000112221
Q ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEE
Q 040956 718 ------DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVL 791 (1085)
Q Consensus 718 ------~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l 791 (1085)
.+.|.+.+++-.|..++.+....+..+....++||+|+|||..|.+ ++|.+|.++++. -++
T Consensus 504 ~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~--~gy~~P~lv~e~-----------~il 570 (849)
T KOG0221|consen 504 LGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAAD--YGYSRPRLVPEV-----------LIL 570 (849)
T ss_pred hhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCccccHH-----------HHH
Confidence 2344555666677777888888899999999999999999999975 789999999763 358
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHH
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I 871 (1085)
.|+|+|||..+.. .+.||||++..+.+ +|++.+|||||.||||.||+|+|++++|||+||||||+.|+++++|+|
T Consensus 571 ~I~ngrh~l~e~~-~dtfvPNst~iggd----kgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI 645 (849)
T KOG0221|consen 571 RIQNGRHPLMELC-ADTFVPNSTEIGGD----KGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRI 645 (849)
T ss_pred HHHcCChhHHHHH-HHhcCCCceeecCC----CceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHH
Confidence 9999999997654 25799999998865 799999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCc--eEEEEEechh
Q 040956 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC--RLLFATHYHP 949 (1085)
Q Consensus 872 ~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~--tiL~aTH~~e 949 (1085)
|+||+..+.+..++||||..+.++|.+|+.||..||||+||.|.||++.||.++..+++.|+..+..+ +++++||+|+
T Consensus 646 ~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfhe 725 (849)
T KOG0221|consen 646 FTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHE 725 (849)
T ss_pred HHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987333 7999999999
Q ss_pred HHHhhc--CccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 040956 950 LTKEFA--SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026 (1085)
Q Consensus 950 l~~~~~--~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~ 1026 (1085)
|..+.. ..+-+..+.|.+.- +..+.++|+|++.+|.+..|+|+++|+.+|+|++||.||++++..++..
T Consensus 726 L~ne~~L~~n~i~qfltm~vlr--------~~ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg 796 (849)
T KOG0221|consen 726 LVNEQLLPQNPIVQFLTMEVLR--------EDGEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSG 796 (849)
T ss_pred hhhhccCCcchhhhhhhHHHHH--------hccCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcC
Confidence 987543 44445555554331 1367899999999999999999999999999999999999999999864
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=3.9e-52 Score=516.03 Aligned_cols=272 Identities=27% Similarity=0.382 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeec
Q 040956 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803 (1085)
Q Consensus 724 ~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~ 803 (1085)
..++..|...+.++...+..+.+.++.||+++|+|.+|.. .+||+|.+.+. ..+.++++|||+++.
T Consensus 248 ~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~--~~~~~P~~~~~------------~~i~l~~~rHPll~~ 313 (782)
T PRK00409 248 ERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKA--LKATFPLFNDE------------GKIDLRQARHPLLDG 313 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCccceEcCC------------CcEEEcCcCCceecc
Confidence 3556777788888899999999999999999999999986 67999999743 469999999999843
Q ss_pred CCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc-cccchHHHHHHHcCCccccc
Q 040956 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIM 882 (1085)
Q Consensus 804 ~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~-a~i~~~d~I~trig~~D~i~ 882 (1085)
..+||||+.++.. +++++|||||||||||+||++|++++|||+||||||.. +.+++||+||+++|..+++.
T Consensus 314 ---~~~Vpndi~l~~~-----~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~ 385 (782)
T PRK00409 314 ---EKVVPKDISLGFD-----KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIE 385 (782)
T ss_pred ---CceECceeEECCC-----ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchh
Confidence 4699999999753 57899999999999999999999999999999999986 79999999999999999999
Q ss_pred cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 883 ~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.+.|+|+.+|.+++.|++.+++++||||||||+|||+.+|.+++.++++++.+. ++++|++|||++++....+++.|.+
T Consensus 386 ~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIitTH~~el~~~~~~~~~v~~ 464 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIATTHYKELKALMYNREGVEN 464 (782)
T ss_pred hchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECChHHHHHHHhcCCCeEE
Confidence 999999999999999999999999999999999999999999999999999875 8999999999999999999999988
Q ss_pred ceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Q 040956 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGE 1029 (1085)
Q Consensus 963 ~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~~~~ 1029 (1085)
.+|.+ + .+.+.|+|+|..|+++.|||+++|+++|+|++||++|+++...-+.++++
T Consensus 465 ~~~~~--d---------~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~ 520 (782)
T PRK00409 465 ASVEF--D---------EETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNE 520 (782)
T ss_pred EEEEE--e---------cCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHH
Confidence 77754 2 45799999999999999999999999999999999999987665554443
No 10
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=2.5e-49 Score=429.32 Aligned_cols=233 Identities=41% Similarity=0.698 Sum_probs=198.1
Q ss_pred cccceecCCCCCCcccCCCCCCEEEEEcceeeeeecC-CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhh
Q 040956 768 MHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 768 ~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~-~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
||||++.++ ..+.++++|||+++.. .+..+||||+.++.. ..++++||||||||||||||+||
T Consensus 1 y~~P~~~~~------------~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~----~~~~~iiTGpN~sGKSt~lk~i~ 64 (235)
T PF00488_consen 1 YCRPKISEE------------KSLKIKEGRHPLLEEKLENKKFVPNDIELSNN----KSRIIIITGPNMSGKSTFLKQIG 64 (235)
T ss_dssp EB-EEEEST------------TEEEEEEE--TTHHHHTTTSSC--EEEEESSS----SSSEEEEESSTTSSHHHHHHHHH
T ss_pred CcccEEcCC------------CCEEEEeccCCEEeccccCCceecceeecCCC----ceeEEEEeCCCccchhhHHHHHH
Confidence 799999854 4799999999998765 357899999999865 34799999999999999999999
Q ss_pred hHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 040956 847 LAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926 (1085)
Q Consensus 847 ~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia 926 (1085)
++++|||+||||||+.+.++++|+||++++..|++..+.|+|+.||.+++.|++.+++++|||+||+|+||++.||.+++
T Consensus 65 ~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~ 144 (235)
T PF00488_consen 65 LIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIA 144 (235)
T ss_dssp HHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHH
T ss_pred HHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHc
Q 040956 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMA 1006 (1085)
Q Consensus 927 ~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~la 1006 (1085)
++++++|.++.+|.+|++||+++++......+.|.++||.+.. .++.+.|+|+|.+|.+..|||+++|+++
T Consensus 145 ~aile~l~~~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~---------~~~~~~f~Ykl~~G~~~~S~ai~iA~~~ 215 (235)
T PF00488_consen 145 IAILEYLLEKSGCFVIIATHFHELAELLERNPNVQNYHMEVEE---------DNDSLTFTYKLKEGICSSSYAIEIAKLA 215 (235)
T ss_dssp HHHHHHHHHTTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEE---------ETTEEEEEEEEEES--SSTCHHHHHHHT
T ss_pred HHHHHHHHHhccccEEEEeccchhHHHhhhCccccccceeeee---------eccccceeEEEeECCCCCcHHHHHHHHh
Confidence 9999999985689999999999999888878889999998873 3688999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 040956 1007 GVPQKVVEAASHAALAMKK 1025 (1085)
Q Consensus 1007 GlP~~vi~rA~~~~~~l~~ 1025 (1085)
|+|++||+||+++.++|++
T Consensus 216 g~p~~II~rA~~i~~~l~~ 234 (235)
T PF00488_consen 216 GLPEEIIERAKEILKQLEE 234 (235)
T ss_dssp T--HHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHhc
Confidence 9999999999999999975
No 11
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=1e-47 Score=475.50 Aligned_cols=274 Identities=26% Similarity=0.360 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeec
Q 040956 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803 (1085)
Q Consensus 724 ~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~ 803 (1085)
..++..|...+.++...+..+.+.++.||+++|+|.+|.. ..+|+|.+.+. ..+.+++++||++..
T Consensus 243 ~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~--~~~~~P~~~~~------------~~i~l~~~rhPll~~ 308 (771)
T TIGR01069 243 EKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKA--VKGEFPMPSFT------------GKIILENARHPLLKE 308 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCeeceecCC------------CCEEEccccCceecC
Confidence 3456777888888899999999999999999999999985 67899998643 369999999999742
Q ss_pred CCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc-cccchHHHHHHHcCCccccc
Q 040956 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIM 882 (1085)
Q Consensus 804 ~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~-a~i~~~d~I~trig~~D~i~ 882 (1085)
..+||||+.++.. .++++||||||||||||||+++++++|+|.|++||+.. ..++++|++|+++|..+++.
T Consensus 309 ---~~~vp~di~l~~~-----~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~ 380 (771)
T TIGR01069 309 ---PKVVPFTLNLKFE-----KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIE 380 (771)
T ss_pred ---CceEeceeEeCCC-----ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHh
Confidence 3599999999742 36999999999999999999999999999999999976 68999999999999999999
Q ss_pred cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 883 ~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.+.|+|+.+|.+++.|+..+++++||||||||+|||+.+|.++++++++++.+. ++++|++|||+++......+++|.+
T Consensus 381 ~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~-g~~viitTH~~eL~~~~~~~~~v~~ 459 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQ-NAQVLITTHYKELKALMYNNEGVEN 459 (771)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHHHhcCCCCeEE
Confidence 999999999999999999999999999999999999999999999999999875 8999999999999877777888988
Q ss_pred ceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcccc
Q 040956 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSIGESF 1031 (1085)
Q Consensus 963 ~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~~~~~~ 1031 (1085)
.+|.+ + .+.+.|+|+|.+|+++.|||+++|+++|+|++||++|+++....+.++++.+
T Consensus 460 ~~~~~--d---------~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li 517 (771)
T TIGR01069 460 ASVLF--D---------EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLI 517 (771)
T ss_pred eEEEE--c---------CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHH
Confidence 87753 2 4579999999999999999999999999999999999999887776654433
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.4e-45 Score=393.39 Aligned_cols=217 Identities=59% Similarity=0.922 Sum_probs=201.6
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHH
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~ 872 (1085)
++++|||+++...+..+||||++|+.. ++++++||||||+|||||+|+++++++|||+||||||+.+.++++|+||
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~----~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~ 77 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGAT----SPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIF 77 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeec----CCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEE
Confidence 678999999754456799999999876 5789999999999999999999999999999999999999999999999
Q ss_pred HHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 873 trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
++++..|++..+.|+|+.||.+++.|++.+++++||||||||+||++.||.+++++++++|.+..++++|++|||++++.
T Consensus 78 ~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~ 157 (218)
T cd03286 78 TRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCD 157 (218)
T ss_pred EecCcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998755899999999999999
Q ss_pred hhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHH
Q 040956 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016 (1085)
Q Consensus 953 ~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA 1016 (1085)
.+..++.|.++||.+.++...+. .++.+.|+|+|.+|+|..|||+++|+++|+|++||+||
T Consensus 158 ~~~~~~~v~~~~m~~~~~~~~~~---~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 158 EFHEHGGVRLGHMACAVKNESDP---TIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred HhhcCcceEEEEEEEEEeccccC---CCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 99989999999999987542211 24789999999999999999999999999999999987
No 13
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.6e-43 Score=380.42 Aligned_cols=221 Identities=43% Similarity=0.661 Sum_probs=199.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHH
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~ 870 (1085)
|+|+++|||+++......+|+||+++... .|++++|+||||+|||||||+++++.++||+|+||||..+.++++|+
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~----~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~ 76 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAE----GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDS 76 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEec----CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccce
Confidence 47899999999765455799999999976 68899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 871 I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
||++++..|++..+.|+|+.||.+++.|++.+++++|+||||||+||++.|+.+++++++++|.+..++++|++||++++
T Consensus 77 i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 77 VLTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred EEEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998658899999999999
Q ss_pred HHhhcCc-cceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHH
Q 040956 951 TKEFASH-PHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAA 1016 (1085)
Q Consensus 951 ~~~~~~~-~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA 1016 (1085)
+...... +.+.++||.+........ ...+++++|+|||.+|+|..|||+++|+++|+|++||+||
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 157 GEILRRFEGSIRNYHMSYLESQKDFE-TSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred HHHHHhcccCeEEEEEEEEEeccccc-cccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 8866543 468899998764321110 1135789999999999999999999999999999999997
No 14
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.3e-42 Score=374.23 Aligned_cols=220 Identities=42% Similarity=0.756 Sum_probs=201.6
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHH
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~ 872 (1085)
++++|||+++...+..+||||++++.. .+++++||||||||||||||++|.+++|||+||||||..+.++++|+|+
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~----~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il 77 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRG----KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCIL 77 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeec----CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeE
Confidence 678999999875556899999999975 5789999999999999999999999999999999999999999999999
Q ss_pred HHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 873 trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
+++|..|.+..+.|+|+.||.+++.+++.+++++||||||||+||++.|+.++++++++++.++.++++||+||++++..
T Consensus 78 ~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~ 157 (222)
T cd03285 78 ARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTA 157 (222)
T ss_pred eeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998655899999999988877
Q ss_pred hhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHH
Q 040956 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAM 1023 (1085)
Q Consensus 953 ~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l 1023 (1085)
.....+.+.++||...... .++.+.|+|+|.+|+|..|||+++|+++|+|++||+||+++++++
T Consensus 158 ~~~~~~~i~~g~~~~~~~~-------~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 158 LADEVPNVKNLHVTALTDD-------ASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred HhhcCCCeEEEEEEEEEeC-------CCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 6666677888888766431 247899999999999999999999999999999999999998876
No 15
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=9.8e-40 Score=350.56 Aligned_cols=214 Identities=46% Similarity=0.717 Sum_probs=196.8
Q ss_pred EEEcceeeeeecCC-CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHH
Q 040956 792 KIKGLWHPFALGEN-GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~-~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~ 870 (1085)
+|+++|||+++... ...+||||++|+.. .++++||||||||||||||+++++++++|+|+++|+..+.++++++
T Consensus 1 ~i~~~~hp~~~~~~~~~~~v~n~~~l~~~-----~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~ 75 (216)
T cd03284 1 EIEGGRHPVVEQVLDNEPFVPNDTELDPE-----RQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDR 75 (216)
T ss_pred CcccccCCEEeeccCCCceEeeeEEecCC-----ceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceee
Confidence 36899999997643 36799999999975 3799999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 871 I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
||++++..|++..+.|+|+.||.+++.++..+++++||||||||+||++.|+.+++++++++|.+..++++|++||++++
T Consensus 76 i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l 155 (216)
T cd03284 76 IFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHEL 155 (216)
T ss_pred EeccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987558999999999988
Q ss_pred HHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 040956 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019 (1085)
Q Consensus 951 ~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~ 1019 (1085)
.......+.+.++||.+.. ..+++.|+|++.+|.+..|||+.+|+++|+|++||+||+++
T Consensus 156 ~~l~~~~~~v~~~~~~~~~---------~~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 156 TELEGKLPRVKNFHVAVKE---------KGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred HHHhhcCCCeEEEEEEEEe---------eCCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 8876667889899987653 35789999999999999999999999999999999999985
No 16
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.7e-38 Score=340.22 Aligned_cols=209 Identities=33% Similarity=0.582 Sum_probs=187.3
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHH
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I 871 (1085)
+|+++|||+++.. ...+||||+.++.. .+++++||||||+|||||||+++.+.+|+|+|+++|+..+.++++|++
T Consensus 1 ~i~~~rHPll~~~-~~~~vpnd~~l~~~----~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i 75 (213)
T cd03281 1 EIQGGRHPLLELF-VDSFVPNDTEIGGG----GPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKI 75 (213)
T ss_pred CcccccCCEEecc-CCceEcceEEecCC----CceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeee
Confidence 3689999999753 35799999999753 247999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh-c-CceEEEEEechh
Q 040956 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-I-NCRLLFATHYHP 949 (1085)
Q Consensus 872 ~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~-~-~~tiL~aTH~~e 949 (1085)
+++++..|++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+. . ++++|++|||++
T Consensus 76 ~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 76 FTRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred eeeeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 1 358999999999
Q ss_pred HHHhhc--CccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCC
Q 040956 950 LTKEFA--SHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008 (1085)
Q Consensus 950 l~~~~~--~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGl 1008 (1085)
++..+. .++.+.++||.+.++.... ...++++|+|+|.+|+|..|||+++|+++|+
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 156 LFNRSLLPERLKIKFLTMEVLLNPTST---SPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred HHHhhhhccCCceEEEEEEEEEcCCcc---CCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 998876 6789999999988653211 1257899999999999999999999999996
No 17
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.8e-38 Score=336.26 Aligned_cols=201 Identities=35% Similarity=0.577 Sum_probs=187.5
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHH
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIF 872 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~ 872 (1085)
|+++|||+++.. ..++|+||++|+.. .|++++||||||+|||||||+++++++|+|+||||||..+.++++|+|+
T Consensus 2 i~~~~hpll~~~-~~~~v~~~~~~~~~----~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~ 76 (204)
T cd03282 2 IRDSRHPILDRD-KKNFIPNDIYLTRG----SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLL 76 (204)
T ss_pred cccccCCeEecc-CCcEEEeeeEEeeC----CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhhee
Confidence 678999998753 46799999999986 6789999999999999999999999999999999999999999999999
Q ss_pred HHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 873 TRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 873 trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
++++..|++..+.|+|+.||.+++.++..+++++|+|||||++||++.|+.++++++++++.+. ++++|++||++++++
T Consensus 77 ~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~TH~~~l~~ 155 (204)
T cd03282 77 SRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFATHFRDIAA 155 (204)
T ss_pred EecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999886 999999999999999
Q ss_pred hhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCC-CchHHHHHHHcC
Q 040956 953 EFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACP-ESYGLQVAVMAG 1007 (1085)
Q Consensus 953 ~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~-~S~gi~vA~laG 1007 (1085)
.++..+.+.++||..... .++.+.|+|+|.+|+|. .|||+++||+..
T Consensus 156 ~~~~~~~v~~~~~~~~~~--------~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 156 ILGNKSCVVHLHMKAQSI--------NSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred HhhcCCCeEEEEEEEEEc--------CCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 999889999999987753 24778999999999999 999999999764
No 18
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=3.6e-36 Score=315.62 Aligned_cols=184 Identities=54% Similarity=0.839 Sum_probs=172.0
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCc
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~s 906 (1085)
+++||||||||||||||+++++++|||+|+||||+.+.++++|+++++++..|++..+.|+|+.||.+++.++..+++++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEe
Q 040956 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFL 986 (1085)
Q Consensus 907 LvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~fl 986 (1085)
|+|+|||++|||+.++.++++++++++.++.++++|++||++++.......+.|.++||.+..+ ++++.|+
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~---------~~~~~~~ 151 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEE---------TENLTFL 151 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEe---------cCceeEE
Confidence 9999999999999999999999999987644889999999999887776778899999987642 4679999
Q ss_pred EeeccCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 040956 987 YRLTSGACPESYGLQVAVMAGVPQKVVEAASHA 1019 (1085)
Q Consensus 987 Ykl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~ 1019 (1085)
|+|.+|.+..|||+++|+++|+|++|++||+++
T Consensus 152 Y~l~~G~~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 152 YKLTPGVAGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred EEEeECCCCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999999999999999999999999975
No 19
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=6.7e-35 Score=309.42 Aligned_cols=197 Identities=31% Similarity=0.423 Sum_probs=181.7
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHH
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I 871 (1085)
+++++|||+++. .++|+||++|+. |++++||||||||||||||+|++.+++++.|++||+..+.+. .+.+
T Consensus 1 ~~~~~~hp~~~~---~~~v~n~i~l~~------g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l 70 (199)
T cd03283 1 EAKNLGHPLIGR---EKRVANDIDMEK------KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKI 70 (199)
T ss_pred CCcccCCCeecC---CCeecceEEEcC------CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceE
Confidence 367999999863 479999999985 589999999999999999999999999999999999988888 7899
Q ss_pred HHHcCCccccccccchhhHHhHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechh
Q 040956 872 FTRLGATDRIMTGESTFLVECTETASVLQKAT--QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHP 949 (1085)
Q Consensus 872 ~trig~~D~i~~~~Stf~~Em~ela~iL~~at--~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~e 949 (1085)
|.++...|++..+.|.|..|+.++..+|..+. +++|+|+|||++|||+.++..+.+++++.+.+. +.++|++||+++
T Consensus 71 ~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiivTH~~~ 149 (199)
T cd03283 71 FTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIISTHDLE 149 (199)
T ss_pred EEeccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEcCcHH
Confidence 99999999999999999999999999999988 999999999999999999988888888888765 899999999999
Q ss_pred HHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCC
Q 040956 950 LTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008 (1085)
Q Consensus 950 l~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGl 1008 (1085)
++..+...++|.++||.+.++ ++.++|+|+|.+|+|+.|||+++|+++|+
T Consensus 150 ~~~~~~~~~~v~~~~~~~~~~---------~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 150 LADLLDLDSAVRNYHFREDID---------DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred HHHhhhcCCCeEEEEEEEEEE---------CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 999888889999999998864 47899999999999999999999999996
No 20
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=2.8e-33 Score=297.50 Aligned_cols=201 Identities=53% Similarity=0.818 Sum_probs=182.0
Q ss_pred EEEcceeeeeecC-CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHH
Q 040956 792 KIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADT 870 (1085)
Q Consensus 792 ~ik~lrhp~~~~~-~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~ 870 (1085)
++++++||+++.. ....+||||+.++. |++++||||||||||||||+|++..+++|.|+|+|+..+.++++|+
T Consensus 1 ~~~~~~~p~l~~~~~~~~~~~~~~~l~~------~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dq 74 (202)
T cd03243 1 EIKGGRHPVLLALTKGETFVPNDINLGS------GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDR 74 (202)
T ss_pred CcccccCCEEeccccCCceEeeeEEEcC------CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCE
Confidence 3689999998753 34679999999983 5799999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 871 IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 871 I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
++++++..+++..+.|+|+.|+.+++.++..+.+++++|+|||++|||+.++..+.+.+++.+.+. ++++|++||++++
T Consensus 75 i~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi~~tH~~~~ 153 (202)
T cd03243 75 IFTRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHEL 153 (202)
T ss_pred EEEEecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEECChHHH
Confidence 999999999999999999999999999999999999999999999999999988888888888765 8999999999999
Q ss_pred HHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCC
Q 040956 951 TKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008 (1085)
Q Consensus 951 ~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGl 1008 (1085)
+..++..+.+.++||.... ..+.+.|+|++.+|.+..|||+.+|+..|+
T Consensus 154 ~~~~~~~~~l~~~~~~~~~---------~~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 154 ADLPEQVPGVKNLHMEELI---------TTGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred HHHhhcCCCeEEEEEEEEe---------cCCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 9877766778888887553 246799999999999999999999999886
No 21
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=5.1e-33 Score=295.17 Aligned_cols=198 Identities=36% Similarity=0.523 Sum_probs=173.3
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc-cccchHHHH
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTI 871 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~-a~i~~~d~I 871 (1085)
|++++||+++.. ..++|++|+.+... .++++||||||+|||||||+++.+.+++|+|++||+.. ..++++|++
T Consensus 2 ~~~~~hp~~~~~-~~~~~~~~~~i~~~-----~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~ 75 (200)
T cd03280 2 LREARHPLLPLQ-GEKVVPLDIQLGEN-----KRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENI 75 (200)
T ss_pred CcccCCCEEecc-CCceEcceEEECCC-----ceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEE
Confidence 689999999764 56799999999742 25899999999999999999999999999999999975 678889999
Q ss_pred HHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 872 ~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
+++++..+.+..+.|+|+.||.++..++..+++++++|+|||++|||+.++..+...+++.+.+. ++++|++||++++.
T Consensus 76 ~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~~l~ 154 (200)
T cd03280 76 FADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYGELK 154 (200)
T ss_pred EEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHHHHH
Confidence 99999999999999999999999999998899999999999999999999998888888888765 89999999998876
Q ss_pred HhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCC
Q 040956 952 KEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008 (1085)
Q Consensus 952 ~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGl 1008 (1085)
........+.++++. ++ .+.+.|+|++.+|.|..|||+++|+.+|+
T Consensus 155 ~~~d~~~~l~~g~l~--~~---------~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 155 AYAYKREGVENASME--FD---------PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred HHHhcCCCeEEEEEE--Ee---------cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 655544555555553 22 35689999999999999999999999996
No 22
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.97 E-value=1.3e-31 Score=259.42 Aligned_cols=109 Identities=37% Similarity=0.671 Sum_probs=94.2
Q ss_pred CHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEec--CCCC-ccccccCccCHHHHHHHHHHcCCeE
Q 040956 271 SASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS--GVGK-CRQVGISESGIDDAVEKLVARGYKV 347 (1085)
Q Consensus 271 TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~--~~g~-~~~aGfPe~sl~~y~~kLV~~GYKV 347 (1085)
|||++|||++|++|||+|+|||+|+|||+|++||+.+++.|+++++.+ +.++ ++|||||.++++.|+++||++||||
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V 80 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRV 80 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEE
Confidence 899999999999999999999999999999999999999999998764 2233 8999999999999999999999999
Q ss_pred EEEeecCChHHHhhccCCCceeeeEEEEecCCccccC
Q 040956 348 GRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG 384 (1085)
Q Consensus 348 AVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~ 384 (1085)
+||||+|++...+ ++++|+|++|+||||++|+
T Consensus 81 ~i~~q~~~~~~~~-----~~~~R~v~~i~TpGt~~~~ 112 (113)
T PF01624_consen 81 AIYEQVETPSETK-----GLIEREVTRIYTPGTLIDD 112 (113)
T ss_dssp EEEEE-S-HHHHS-----SS--EEEEEEEBTTS-TST
T ss_pred EEEEecCCccccC-----CCccEEEEEEECcCeecCc
Confidence 9999999987653 5899999999999999985
No 23
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.3e-29 Score=309.64 Aligned_cols=266 Identities=29% Similarity=0.399 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeec
Q 040956 724 AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALG 803 (1085)
Q Consensus 724 ~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~ 803 (1085)
..++..+...+.++...+......++++|++.+-+.++.. ...+.|.+.+. ..|.+.+.+||.+.
T Consensus 240 e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~--~~~v~P~~~~~------------~~l~l~~~~HPll~- 304 (753)
T COG1193 240 ERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKA--LKGVKPDFSND------------GVLELLDARHPLLK- 304 (753)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHh--hccCCCccCCC------------ceEEeccccCccCc-
Confidence 3456777788888888888899999999999999999985 67899999733 47999999999963
Q ss_pred CCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccccc-ccchHHHHHHHcCCccccc
Q 040956 804 ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC-VLSLADTIFTRLGATDRIM 882 (1085)
Q Consensus 804 ~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a-~i~~~d~I~trig~~D~i~ 882 (1085)
..||+++.++.+ -+.++|||||++|||+.|+++|++.+|+|.|.++|+... .+++|+.||..+|..+++.
T Consensus 305 ----~~v~~~i~~~~e-----~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIe 375 (753)
T COG1193 305 ----EDVPNDLELGEE-----LDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIE 375 (753)
T ss_pred ----cccccccccccc-----cceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHH
Confidence 239999999865 358999999999999999999999999999999999876 8999999999999999999
Q ss_pred cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 883 TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 883 ~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
..+|||+.+|..++.+|.. ..+|+++||+|+||++.+|.+++.++++++.++ ++.++.+|||.++-.....++.+.+
T Consensus 376 qsLSTFSshm~~i~~il~~--~dsLvl~DElg~GTdp~EgaaLai~ile~l~~~-~~~~~~tTH~~elk~~~~~~~~v~n 452 (753)
T COG1193 376 QSLSTFSSHMTNIVEILEK--ADSLVLFDELGSGTDPDEGAALAIAILEDLLEK-PAKIVATTHYRELKALAAEREGVEN 452 (753)
T ss_pred HHHhhhHHHHHHHHHHHhh--cchhHHHHHhhcCCCcchhHHHHHHHHHHHHhc-ccceehHhhHHHHHHHHhcchhhhc
Confidence 9999999999999999943 449999999999999999999999999999986 9999999999999988888888888
Q ss_pred ceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 040956 963 QHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKSI 1027 (1085)
Q Consensus 963 ~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~~ 1027 (1085)
..|... .+.+..+|++..|+...||++.+|..+|+|..+|++|+.....-...+
T Consensus 453 as~~fd-----------~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~~~~~~ 506 (753)
T COG1193 453 ASMEFD-----------AETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEEKELL 506 (753)
T ss_pred hhhhhh-----------HHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCchHhHH
Confidence 766432 577999999999999999999999999999999999998764444433
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.5e-20 Score=203.74 Aligned_cols=167 Identities=25% Similarity=0.315 Sum_probs=132.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------H---------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------L--------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------l--------- 851 (1085)
+.|+++|+..-| +...|+.||+|.+. +|++++|+||||||||||+|.|.++.- .
T Consensus 3 ~~i~v~nl~v~y-----~~~~vl~~i~l~v~----~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSY-----GNRPVLEDISLSVE----KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEE-----CCEeeeeccEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc
Confidence 579999999988 33379999999998 789999999999999999999987542 1
Q ss_pred -hhccccccccc-----ccc-------------------------chHHHHHHHcCCccccccccchhhHHhH---HHHH
Q 040956 852 -AQLGCFVPCEM-----CVL-------------------------SLADTIFTRLGATDRIMTGESTFLVECT---ETAS 897 (1085)
Q Consensus 852 -aqiG~~VPa~~-----a~i-------------------------~~~d~I~trig~~D~i~~~~Stf~~Em~---ela~ 897 (1085)
..+| |||+.. +-+ ..++..+.++|..+-....++..+++.. -+|+
T Consensus 74 ~~~Ig-YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 74 RLRIG-YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR 152 (254)
T ss_pred CCeEE-EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence 2377 999853 111 2244567777776665555555555433 3888
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEE
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAF 969 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~ 969 (1085)
+| +++|+|+|||||+.|.|+.. ....+.++.+|.++ |+|+|++|||+..+..+.++.-..|.|+.+.-
T Consensus 153 AL--~~~p~lllLDEP~~gvD~~~-~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G 220 (254)
T COG1121 153 AL--AQNPDLLLLDEPFTGVDVAG-QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLIASG 220 (254)
T ss_pred Hh--ccCCCEEEecCCcccCCHHH-HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCeeEecc
Confidence 88 99999999999999999665 45577899999988 99999999999999999998888888887763
No 25
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.83 E-value=3.2e-20 Score=190.91 Aligned_cols=134 Identities=40% Similarity=0.467 Sum_probs=115.2
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh----------ccccccccc
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ----------LGCFVPCEM 862 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq----------iG~~VPa~~ 862 (1085)
+...+||.. +++||+.+.. +.+++|||||||||||+||+++.+..+++ .|+++|+.+
T Consensus 2 i~~~~~~~~-------~~~~~i~~~~------~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 68 (162)
T cd03227 2 IVLGRFPSY-------FVPNDVTFGE------GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVS 68 (162)
T ss_pred ceeCCCCEE-------EeccEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeE
Confidence 455678874 7999999863 36999999999999999999999999999 999999988
Q ss_pred cccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCce
Q 040956 863 CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT--QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR 940 (1085)
Q Consensus 863 a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at--~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~t 940 (1085)
..+ ++++++ .|.++.++..++++|..++ +++++|+|||++|||+.++.+++..+.+++. + +++
T Consensus 69 ~~~-----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~-~-~~~ 133 (162)
T cd03227 69 AEL-----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-K-GAQ 133 (162)
T ss_pred EEE-----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCE
Confidence 766 555544 7888999999999997665 8999999999999999999999988887754 3 789
Q ss_pred EEEEEechhHHHhh
Q 040956 941 LLFATHYHPLTKEF 954 (1085)
Q Consensus 941 iL~aTH~~el~~~~ 954 (1085)
+|++||+++++...
T Consensus 134 vii~TH~~~~~~~~ 147 (162)
T cd03227 134 VIVITHLPELAELA 147 (162)
T ss_pred EEEEcCCHHHHHhh
Confidence 99999999998753
No 26
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.79 E-value=3.9e-18 Score=192.04 Aligned_cols=68 Identities=47% Similarity=0.785 Sum_probs=65.0
Q ss_pred ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhh
Q 040956 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKAR 630 (1085)
Q Consensus 563 ~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~ 630 (1085)
+||+|+|++|+|+||+|+++|++|.++|++||++|++|.++..+...++..|+++||++|++.++..+
T Consensus 7 ~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~ 74 (308)
T smart00533 7 LLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERG 74 (308)
T ss_pred HHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999888999999999999999999998753
No 27
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.4e-18 Score=183.39 Aligned_cols=160 Identities=26% Similarity=0.268 Sum_probs=120.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------------h
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------A 852 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------a 852 (1085)
..+.++++++-| +...|+.|++|++. +|+++.|+||+|||||||||.|+++.-. .
T Consensus 2 ~~l~i~~v~~~f-----~~~~vl~~i~L~v~----~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~ 72 (248)
T COG1116 2 ALLEIEGVSKSF-----GGVEVLEDINLSVE----KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGP 72 (248)
T ss_pred ceEEEEeeEEEe-----CceEEeccceeEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCC
Confidence 468899999988 45789999999998 8999999999999999999999886521 1
Q ss_pred hccccccccccccch------------------------HHHHHHHcCCccccccccchhhHHhH---HHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMCVLSL------------------------ADTIFTRLGATDRIMTGESTFLVECT---ETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a~i~~------------------------~d~I~trig~~D~i~~~~Stf~~Em~---ela~iL~~at~~ 905 (1085)
.+| ||+++.+-+++ ++.++..+|..+.........+++|+ .+|++| +.+|
T Consensus 73 ~~~-~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL--~~~P 149 (248)
T COG1116 73 DIG-YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL--ATRP 149 (248)
T ss_pred CEE-EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHH--hcCC
Confidence 233 66666544432 34456666655544444444444554 477777 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
.++||||||..+|......+-..+++ +.++.+.|++|+|||.+.+-.++++..|.
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~-lw~~~~~TvllVTHdi~EAv~LsdRivvl 204 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLR-LWEETRKTVLLVTHDVDEAVYLADRVVVL 204 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHH-HHHhhCCEEEEEeCCHHHHHhhhCEEEEe
Confidence 99999999999998887665555554 55556899999999999999999876543
No 28
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=4.5e-18 Score=191.09 Aligned_cols=161 Identities=20% Similarity=0.297 Sum_probs=122.9
Q ss_pred CEEEEEcceeeeeecCCC-CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------
Q 040956 789 PVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------ 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~-~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------ 849 (1085)
..+.++++.+.| + ...+++|++|.+. +|++++|+||||||||||||+++++.
T Consensus 3 ~~i~~~~l~k~~-----~~~~~~l~~vs~~i~----~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 3 EVIEVRNLTKKY-----GGDKTALDGVSFEVE----PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEP 73 (293)
T ss_pred ceeeecceEEEe-----CCCCEEEeceeEEEc----CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCH
Confidence 357889999998 5 4799999999998 79999999999999999999997654
Q ss_pred --HHhhccccccccccc------------------------cchHHHHHHHcCCccccccccchhhHHhH---HHHHHHH
Q 040956 850 --ILAQLGCFVPCEMCV------------------------LSLADTIFTRLGATDRIMTGESTFLVECT---ETASVLQ 900 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~------------------------i~~~d~I~trig~~D~i~~~~Stf~~Em~---ela~iL~ 900 (1085)
+..++| |+|+...- ...++.++..+|..+......++|+.+|+ .+|.+|
T Consensus 74 ~~~~~~ig-y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL- 151 (293)
T COG1131 74 AKVRRRIG-YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL- 151 (293)
T ss_pred HHHHhheE-EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH-
Confidence 234677 88875411 11345677788877633333445555544 466666
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+.+|+|+|||||++|.|+.-... .+.++..+.++.+.|+|++||+++.+..++++..+..
T Consensus 152 -~~~P~lliLDEPt~GLDp~~~~~-~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~ 211 (293)
T COG1131 152 -LHDPELLILDEPTSGLDPESRRE-IWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211 (293)
T ss_pred -hcCCCEEEECCCCcCCCHHHHHH-HHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe
Confidence 89999999999999999887554 5667788887644899999999999999888655443
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.76 E-value=4.2e-18 Score=185.61 Aligned_cols=159 Identities=22% Similarity=0.261 Sum_probs=119.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...| +++.|.+|++|++. +|++++|+||||||||||||+++++.
T Consensus 2 ~L~~~~ls~~y-----~~~~il~~ls~~i~----~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGY-----GGKPILDDLSFSIP----KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEE-----CCeeEEecceEEec----CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHH
Confidence 58899999988 57899999999998 79999999999999999999997744
Q ss_pred HHhhcccccccccc---ccc-------------------------hHHHHHHHcCCcccccc---ccchhhHHhHHHHHH
Q 040956 850 ILAQLGCFVPCEMC---VLS-------------------------LADTIFTRLGATDRIMT---GESTFLVECTETASV 898 (1085)
Q Consensus 850 ilaqiG~~VPa~~a---~i~-------------------------~~d~I~trig~~D~i~~---~~Stf~~Em~ela~i 898 (1085)
-+|+.-.|||+... .++ .++..+..+|..+-... .+|.....+.-+|++
T Consensus 73 elAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 73 ELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred HHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence 23544458988631 111 23334666665544444 444433344457778
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
| +.++.++|||||++.+|...... ...++..+.++.|.|+|+++||++++..++++.-+
T Consensus 153 L--aQ~~~iLLLDEPTs~LDi~~Q~e-vl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~ 211 (258)
T COG1120 153 L--AQETPILLLDEPTSHLDIAHQIE-VLELLRDLNREKGLTVVMVLHDLNLAARYADHLIL 211 (258)
T ss_pred H--hcCCCEEEeCCCccccCHHHHHH-HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 8 99999999999977777666555 44577777766689999999999999999987543
No 30
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=9.3e-18 Score=175.47 Aligned_cols=157 Identities=21% Similarity=0.284 Sum_probs=122.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+.+-| |+..|+++|+|++. +|++++|+||+|||||||||++.++.
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~----~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVE----KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEc----CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhH
Confidence 68999999998 67899999999998 89999999999999999999994332
Q ss_pred --HHhhccccccccccccc---hHH----------------------HHHHHcCCccccccccchhhHHh---HHHHHHH
Q 040956 850 --ILAQLGCFVPCEMCVLS---LAD----------------------TIFTRLGATDRIMTGESTFLVEC---TETASVL 899 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~i~---~~d----------------------~I~trig~~D~i~~~~Stf~~Em---~ela~iL 899 (1085)
+..++| +|.+...-++ ..+ .++.++|..|......+..+++. ..+|++|
T Consensus 73 ~~~R~~vG-mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 73 LKLRRKVG-MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHHHHhcC-eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 234566 6766543222 222 36788898777666555555554 4477777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
|.+|.++|+||||+.+||.-... ...++..|++. |.|.|++||.+.++..++++.-+
T Consensus 152 --aM~P~vmLFDEPTSALDPElv~E-VL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 152 --AMDPKVMLFDEPTSALDPELVGE-VLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred --cCCCCEEeecCCcccCCHHHHHH-HHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEE
Confidence 99999999999999888876333 56788888886 99999999999999999987433
No 31
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=8.2e-18 Score=177.94 Aligned_cols=162 Identities=21% Similarity=0.287 Sum_probs=122.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-----------------HHh
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-----------------ILA 852 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-----------------ila 852 (1085)
.++++++++.| |+..+.+|++|.+. +|++++++||||+||||.+|+|.++. +-.
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~----~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVP----PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhcc-----Cceeeecceeeeec----CCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhh
Confidence 47889998888 67889999999998 89999999999999999999997654 234
Q ss_pred hccccccccc---cccchHHH---------------------HHHHcCCccccccccchhhHHhHH-HHHHHHhCCCCcE
Q 040956 853 QLGCFVPCEM---CVLSLADT---------------------IFTRLGATDRIMTGESTFLVECTE-TASVLQKATQDSL 907 (1085)
Q Consensus 853 qiG~~VPa~~---a~i~~~d~---------------------I~trig~~D~i~~~~Stf~~Em~e-la~iL~~at~~sL 907 (1085)
.|| |+|.+. -.+++.|. .+.|++.........-+.+.++++ +-.|...+++|.|
T Consensus 73 rIG-yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 73 RIG-YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hcc-cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 688 999875 34445554 345555555555555555555554 2222223699999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeec
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~ 963 (1085)
|||||||+|+||.....+-.++. .+.++ |+|+||+||-++-++++|++..+...
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~-~lk~~-GatIifSsH~Me~vEeLCD~llmL~k 205 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIF-ELKEE-GATIIFSSHRMEHVEELCDRLLMLKK 205 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHH-HHHhc-CCEEEEecchHHHHHHHhhhhheecC
Confidence 99999999999999766555555 45554 99999999999999999988655543
No 32
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.73 E-value=2.2e-17 Score=186.85 Aligned_cols=160 Identities=18% Similarity=0.204 Sum_probs=117.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
+.|+++++.+.| ++..+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 6 ~~i~i~~l~k~~-----~~~~~l~~vsl~i~----~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRY-----GDKLVVDGLSFHVQ----RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEE-----CCeEEEecceEEEe----CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH
Confidence 579999999988 45679999999998 79999999999999999999997653
Q ss_pred -HHhhcccccccccc---ccchHHH---------------------HHHHcCCcccccc---ccchhhHHhHHHHHHHHh
Q 040956 850 -ILAQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRIMT---GESTFLVECTETASVLQK 901 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL~~ 901 (1085)
+..++| |+|++.. .+++.+. ++..++..+.... .+|..+.....+|++|
T Consensus 77 ~~~~~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL-- 153 (306)
T PRK13537 77 HARQRVG-VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL-- 153 (306)
T ss_pred HHHhcEE-EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH--
Confidence 123466 7777532 1223222 3334444333333 3444444444577777
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+.+|+++|||||++|+|+..... .+.++..+.++ |.|+|++||+++++..++++..+..
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~-l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~ 212 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHL-MWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIE 212 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 89999999999999999877554 55567777654 8999999999999999998766554
No 33
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=3.2e-17 Score=173.89 Aligned_cols=160 Identities=21% Similarity=0.266 Sum_probs=121.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
+.|++++++..| |++.|.++++|++. +|++++|+||+|+|||||||+|+++.
T Consensus 7 ~~I~vr~v~~~f-----G~~~Ild~v~l~V~----~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 7 PLIEVRGVTKSF-----GDRVILDGVDLDVP----RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred ceEEEeeeeeec-----CCEEEecCceeeec----CCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence 789999999998 78999999999998 89999999999999999999997643
Q ss_pred -----HHhhcccccccccc---ccchHHHH----------------------HHHcCCc----cccccccchhhHHhHHH
Q 040956 850 -----ILAQLGCFVPCEMC---VLSLADTI----------------------FTRLGAT----DRIMTGESTFLVECTET 895 (1085)
Q Consensus 850 -----ilaqiG~~VPa~~a---~i~~~d~I----------------------~trig~~----D~i~~~~Stf~~Em~el 895 (1085)
+.-++| ++.+..| .++++|++ +..+|.. +.....+|..|.....+
T Consensus 78 ~~~~~ir~r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 78 EELYEIRKRMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HHHHHHHhhee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 233455 4444332 34444442 1223433 33344455555555568
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
|+++ +.+|+|+++|||++|.||.....+ ..++..|.+..+.|++++|||.+.+..++++..+.
T Consensus 157 ARAi--aldPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 157 ARAI--ALDPELLFLDEPTSGLDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred HHHH--hcCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence 8888 999999999999999999986554 45667788888999999999999998888875543
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.72 E-value=3.2e-17 Score=187.88 Aligned_cols=160 Identities=21% Similarity=0.245 Sum_probs=117.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
++|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 40 ~~i~i~nl~k~y-----~~~~~l~~is~~i~----~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 40 VAIDLAGVSKSY-----GDKAVVNGLSFTVA----SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110 (340)
T ss_pred eeEEEEEEEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchH
Confidence 579999999998 45679999999998 79999999999999999999997753
Q ss_pred -HHhhcccccccccc---ccchHH---------------------HHHHHcCCccccccccchhhHH---hHHHHHHHHh
Q 040956 850 -ILAQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMTGESTFLVE---CTETASVLQK 901 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~ 901 (1085)
....+| |+|+... .+++.+ .++.+++..+.......+++.+ ...+|++|
T Consensus 111 ~~~~~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL-- 187 (340)
T PRK13536 111 LARARIG-VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL-- 187 (340)
T ss_pred HHhccEE-EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHH--
Confidence 122355 7776531 122222 2334445543333333444444 44466666
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+.+|+++|||||+.|+|+..... .+.++..+.+. |.|+|++||+++.+..++++..+..
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~-l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~ 246 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHL-IWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLE 246 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence 89999999999999999877554 45566667654 8999999999999999998765543
No 35
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=1.4e-16 Score=170.68 Aligned_cols=157 Identities=21% Similarity=0.289 Sum_probs=113.0
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
++++++++-|..... ...++++++|.++ +|++++|+||+||||||||++++++.-
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~----~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIE----AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEc----CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHH
Confidence 567888887743221 2579999999998 899999999999999999999986541
Q ss_pred -----Hhhcccccccccccc---ch---------------------HHHHHHHcCCccccc-cccchhhHH---hHHHHH
Q 040956 851 -----LAQLGCFVPCEMCVL---SL---------------------ADTIFTRLGATDRIM-TGESTFLVE---CTETAS 897 (1085)
Q Consensus 851 -----laqiG~~VPa~~a~i---~~---------------------~d~I~trig~~D~i~-~~~Stf~~E---m~ela~ 897 (1085)
..++| ||.+...-+ +. ...++.++|..+... ...+..+++ ...+|+
T Consensus 77 ~~~~R~~~iG-fvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 77 LAKLRRKKIG-FVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHHHhEE-EECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 13466 666654221 11 233556667776655 434444444 444777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
+| +.+|+|||.||||..+|...+..+ ..++..+.++.|.|+|+||||.+++.....
T Consensus 156 AL--~~~P~iilADEPTgnLD~~t~~~V-~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 156 AL--INNPKIILADEPTGNLDSKTAKEV-LELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HH--hcCCCeEEeeCccccCChHHHHHH-HHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 77 899999999999999997776654 456666776668999999999999885443
No 36
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.69 E-value=1.6e-16 Score=175.49 Aligned_cols=158 Identities=17% Similarity=0.128 Sum_probs=112.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------Hh
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------LA 852 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------la 852 (1085)
+.|+++|+.+.| ++..+++|++|.+. +|++++|+||||+|||||||+|+++.- ..
T Consensus 11 ~~l~i~~l~~~~-----~~~~il~~isl~i~----~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRY-----GERTVLNQLDLHIP----AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEE-----CCcceeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhC
Confidence 679999999888 34679999999998 799999999999999999999987531 11
Q ss_pred hccccccccccc---cchH---------------HHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEEEEe
Q 040956 853 QLGCFVPCEMCV---LSLA---------------DTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLVILD 911 (1085)
Q Consensus 853 qiG~~VPa~~a~---i~~~---------------d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLD 911 (1085)
++| |+|+.... .++. ..++..+|..+......+.++.+ ...++++| +.+|+++|||
T Consensus 82 ~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL--~~~p~lllLD 158 (257)
T PRK11247 82 DTR-LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARAL--IHRPGLLLLD 158 (257)
T ss_pred ceE-EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH--hcCCCEEEEe
Confidence 233 66654311 1222 23445566554433333444444 44466666 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
||++|+|+..... ...++..+.++.+.++|++||+.+++..++++..
T Consensus 159 EPt~~LD~~~~~~-l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~ 205 (257)
T PRK11247 159 EPLGALDALTRIE-MQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVL 205 (257)
T ss_pred CCCCCCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999776544 4445566655447899999999999888777543
No 37
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.69 E-value=1.3e-16 Score=180.43 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=113.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
.+|+++++.+.| ++..++++++|++. +|++++|+||||||||||||+++++.-
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~vsl~i~----~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSY-----GDKVVVNDLSFTIA----RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEe-----CCeEEEcceeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHH
Confidence 478999999988 35679999999998 799999999999999999999977531
Q ss_pred --Hhhcccccccccc---ccchHHH---------------------HHHHcCCccccccccchhhHH---hHHHHHHHHh
Q 040956 851 --LAQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRIMTGESTFLVE---CTETASVLQK 901 (1085)
Q Consensus 851 --laqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i~~~~Stf~~E---m~ela~iL~~ 901 (1085)
..++| |+|+... .+++.+. ++.+++..+.......+++.+ ...+|++|
T Consensus 74 ~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al-- 150 (303)
T TIGR01288 74 LARVAIG-VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARAL-- 150 (303)
T ss_pred HHhhcEE-EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHH--
Confidence 12345 7776532 1233332 233444443333333344444 34466666
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|.++|||||++|.|+..... .+.++..+.++ |.++|++||+++++..++++..+.
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~-l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l 208 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHL-IWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVL 208 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEE
Confidence 89999999999999999776544 45566666654 889999999999998888765443
No 38
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.3e-16 Score=171.79 Aligned_cols=155 Identities=18% Similarity=0.235 Sum_probs=107.7
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+.+.| ++..+++|++|.+. +|++++|+||||+|||||||+|+++.-
T Consensus 1 i~~~~~~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKY-----GDFEAVRGVSFRVR----RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEE-----CCEEeeeceeEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHH
Confidence 3577777777 34579999999997 789999999999999999999987531
Q ss_pred Hhhcccccccccc---ccchH---------------------HHHHHHcCCccccccc---cchhhHHhHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMC---VLSLA---------------------DTIFTRLGATDRIMTG---ESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a---~i~~~---------------------d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at 903 (1085)
...+| |+|+... .+++. +.++.++|..+..... +|..+.....+++++ +.
T Consensus 72 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al--~~ 148 (220)
T cd03265 72 RRRIG-IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSL--VH 148 (220)
T ss_pred hhcEE-EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH--hc
Confidence 11233 6666431 11222 2234455554433333 344444344466666 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+|+++|||||++|.|+..... ...++..+.++.+.++|++||+.+.+..++++.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i 202 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAH-VWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999776544 445666666544789999999999998888754
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.3e-16 Score=170.82 Aligned_cols=154 Identities=22% Similarity=0.240 Sum_probs=106.8
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------h
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------------------A 852 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------------------a 852 (1085)
+++++.+.| ++..++++++|++. +|++++|+||||+|||||||+++++.-. .
T Consensus 2 ~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 2 ELKGLSKTY-----GSVRALDDLSLTVE----PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72 (213)
T ss_pred eeeeeEEEe-----CCeeeecceeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhc
Confidence 566777766 24579999999998 7999999999999999999999875310 1
Q ss_pred hcccccccccc---ccchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~ 905 (1085)
++| |+|+... ..++.+ .++..+|..+.... .+|..+.....++++| +.+|
T Consensus 73 ~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al--~~~p 149 (213)
T cd03259 73 NIG-MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARAL--AREP 149 (213)
T ss_pred cEE-EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH--hcCC
Confidence 233 6666431 112222 23444554433333 3444444445567777 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.++|||||++|.|+..... ...++..+.++.+.++|++||+.+++..++++.
T Consensus 150 ~~lllDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v 201 (213)
T cd03259 150 SLLLLDEPLSALDAKLREE-LREELKELQRELGITTIYVTHDQEEALALADRI 201 (213)
T ss_pred CEEEEcCCcccCCHHHHHH-HHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEE
Confidence 9999999999999776544 445555665544789999999999988877754
No 40
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.69 E-value=8.7e-16 Score=162.32 Aligned_cols=175 Identities=31% Similarity=0.472 Sum_probs=111.2
Q ss_pred ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccchhhHH
Q 040956 563 YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLPLI 642 (1085)
Q Consensus 563 ~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~~l~~l 642 (1085)
+||+|+|++|+|+||+||++|++|++.|++||++|++|.+|+++...++..|++++|+++++.++......
T Consensus 25 ~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~l~~~~di~~~l~~l~~~~~~--------- 95 (204)
T PF05192_consen 25 LLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSILKKIPDIERILKRLRSGRAS--------- 95 (204)
T ss_dssp HH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC-SHHHHHHHHHTTHHH---------
T ss_pred HHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhhhhccchHHHHHHHHHHhhcC---------
Confidence 89999999999999999999999999999999999999999999999999999999999999998653210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhcCCCcccCCCcHHHHHHHHHHhhccCCCcccc-----c
Q 040956 643 GKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFLTQFEAAIDSDFPDYQN-----H 717 (1085)
Q Consensus 643 ~~~~l~~~i~~~~~l~~~l~~~~d~l~~l~~~~~~i~~l~~~~~~~~l~~~~~l~~~l~~~e~~i~~~~~~~~~-----~ 717 (1085)
...+..+...+....++...+...-...+.+.+... .+ ..+..+...++..++.+...... .
T Consensus 96 --------~~~~~~l~~~l~~~~~i~~~~~~~~~~~~~L~~l~~--~l---~~~~~l~~~i~~~id~~~~~~~~~~~~I~ 162 (204)
T PF05192_consen 96 --------PQDLLKLYKTLRSIIEIKKLLSERLESSPLLRKLLS--SL---PDFSELLDEIESTIDEDKSLAIREQDIIR 162 (204)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHH--HH---CSHHHHHHHHHHHBHTS-CCHCTTSSSBS
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH--hc---ccHHHHHHHHHHHHhcCcHHHHhcccHHH
Confidence 111111222222222221111111010011221111 00 12344555566555543211111 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 040956 718 DVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAV 759 (1085)
Q Consensus 718 ~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~ 759 (1085)
.+.+.+..++..+...+.++.+.|..+.+++++||||+|+|+
T Consensus 163 ~~~~~~~~i~~~L~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 163 DINDEEQRILRELTNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp THHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 145566778888888888899999999999999999999985
No 41
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.7e-16 Score=170.92 Aligned_cols=160 Identities=20% Similarity=0.181 Sum_probs=107.1
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------------hhcc
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------AQLG 855 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------aqiG 855 (1085)
+++++...|-.. .+...+.++++|++. +|++++|+||||+|||||||+++++.-. .++|
T Consensus 2 ~~~~l~~~~~~~-~~~~~il~~vs~~i~----~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 2 EVRNVSKTYGGG-GGAVTALEDISLSVE----EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred eEEEEEEEcCCC-CcceEEEeceeEEEe----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEE
Confidence 466776666100 001579999999998 7999999999999999999999876311 1233
Q ss_pred cccccccc---ccchHH---------------------HHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEE
Q 040956 856 CFVPCEMC---VLSLAD---------------------TIFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSLV 908 (1085)
Q Consensus 856 ~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLv 908 (1085)
|||+... ..++.+ .++.++|..+... ..+|..+.....++++| +.+|+++
T Consensus 77 -~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al--~~~p~ll 153 (220)
T cd03293 77 -YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL--AVDPDVL 153 (220)
T ss_pred -EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH--HcCCCEE
Confidence 6665421 112222 2344455543333 33444444445567777 8999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
|||||++|.|+..... .+.++..+.++.+.++|++||+.+.+..++++..+
T Consensus 154 lLDEPt~~LD~~~~~~-~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (220)
T cd03293 154 LLDEPFSALDALTREQ-LQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV 204 (220)
T ss_pred EECCCCCCCCHHHHHH-HHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence 9999999999777554 44455555544478999999999988877775433
No 42
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.7e-16 Score=172.49 Aligned_cols=156 Identities=22% Similarity=0.223 Sum_probs=107.2
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++|+...| ++..+.+|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 2 ELRGLTKSF-----GGRTVLKGVDLDVR----RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred eEEEEEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhH
Confidence 567777766 34579999999998 799999999999999999999976431
Q ss_pred ---Hhhcccccccccc---ccchHHH----------------------HHHHcCCccccccc---cchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMC---VLSLADT----------------------IFTRLGATDRIMTG---ESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~a---~i~~~d~----------------------I~trig~~D~i~~~---~Stf~~Em~ela~iL 899 (1085)
..++| |||+... .+++.+. ++.++|..+..... +|..+.....++++|
T Consensus 73 ~~~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 73 YRLRRRMG-MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred HHHhcceE-EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 11244 6666431 1222222 33444544333333 444444444566666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+.+|+++|||||++|.|+..... ...++..+.++.+.++|++||+.+.+..++++..+
T Consensus 152 --~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~ 209 (235)
T cd03261 152 --ALDPELLLYDEPTAGLDPIASGV-IDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV 209 (235)
T ss_pred --hcCCCEEEecCCcccCCHHHHHH-HHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE
Confidence 89999999999999999766444 44556666553478999999999998888775433
No 43
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=1.1e-16 Score=170.72 Aligned_cols=162 Identities=29% Similarity=0.333 Sum_probs=122.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++++++++...| |+-.+.||++|++. +|++++|+||||+||||+++.|.+..-
T Consensus 3 ~lL~v~~l~k~F-----GGl~Al~~Vsl~v~----~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 3 PLLEVRGLSKRF-----GGLTAVNDVSLEVR----PGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP 73 (250)
T ss_pred ceeeeccceeec-----CCEEEEeceeEEEc----CCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCH
Confidence 578899999888 77899999999998 899999999999999999999965431
Q ss_pred --Hhhcccc----ccccccccchHHH---------------------------------HHHHcCC---ccccccccchh
Q 040956 851 --LAQLGCF----VPCEMCVLSLADT---------------------------------IFTRLGA---TDRIMTGESTF 888 (1085)
Q Consensus 851 --laqiG~~----VPa~~a~i~~~d~---------------------------------I~trig~---~D~i~~~~Stf 888 (1085)
.++.|.- ++.-...++++++ ++.++|. .+.....+|..
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 1122210 0001112222222 4444553 34455567777
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.....|+|++| |++|.|+|||||..|.++.+...++. ++..+.+..+.+++++.|++.++..++++..|.+
T Consensus 154 ~qR~LEIArAL--a~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~ 224 (250)
T COG0411 154 QQRRLEIARAL--ATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN 224 (250)
T ss_pred HhHHHHHHHHH--hcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc
Confidence 77888999999 99999999999999999999877665 5566777667999999999999999999876654
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.68 E-value=2.1e-16 Score=169.55 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=107.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|++.-|- .+...+.++++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 2 l~~~~l~~~~~---~~~~~il~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYP---GGHQPALDNLNFHIT----KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEec---CCCeeEEEeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhH
Confidence 67888877762 012469999999998 799999999999999999999976531
Q ss_pred ----Hhhcccccccccc---ccchHHH---------------------HHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+... ..++.+. ++..+|..+.... .+|..+.....++++|
T Consensus 75 ~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 75 IPFLRRHIG-MVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred HHHHHHhce-EEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 11344 6666532 1222222 3344555433333 3444444444567777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|+|+.....+. .++..+.+. +.++|++||+.+++..++++.
T Consensus 154 --~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i 208 (216)
T TIGR00960 154 --VHKPPLLLADEPTGNLDPELSRDIM-RLFEEFNRR-GTTVLVATHDINLVETYRHRT 208 (216)
T ss_pred --hcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE
Confidence 8999999999999999977655544 455666554 889999999999988777653
No 45
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.68 E-value=2.7e-16 Score=171.66 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=107.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|.++++...|- ++..+.+|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 2 l~~~~l~~~~~----~~~~il~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYP----NGKQALKNINLNIN----PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecC----CCcceeecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHH
Confidence 56778877761 14579999999998 799999999999999999999976431
Q ss_pred ----Hhhcccccccccc---ccchHHH-----------------------------HHHHcCCcccccc---ccchhhHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLADT-----------------------------IFTRLGATDRIMT---GESTFLVE 891 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d~-----------------------------I~trig~~D~i~~---~~Stf~~E 891 (1085)
..++| |+|+... .+++.+. ++..+|..+.... .+|..+..
T Consensus 74 ~~~~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (243)
T TIGR02315 74 LRKLRRRIG-MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQ 152 (243)
T ss_pred HHHHHhheE-EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 12244 6666431 1222222 2334444332223 34444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
...++++| +.+|+++|||||++|.|+..... ...++..+.++.++++|++||+.+.+..++++.
T Consensus 153 rv~la~al--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v 216 (243)
T TIGR02315 153 RVAIARAL--AQQPDLILADEPIASLDPKTSKQ-VMDYLKRINKEDGITVIINLHQVDLAKKYADRI 216 (243)
T ss_pred HHHHHHHH--hcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 44466666 89999999999999999766444 455666665544789999999999988777654
No 46
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.68 E-value=2.4e-16 Score=168.75 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=107.8
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...|- ++..+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 l~~~~l~~~~~----~~~~il~~is~~i~----~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYP----GGVAALHDVSLHIR----KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeC----CCceeecceeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH
Confidence 67888887771 23579999999998 799999999999999999999977531
Q ss_pred ----Hhhcccccccccc---ccchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+... ..++.+ .++..+|..+.... .+|..+.....++++|
T Consensus 74 ~~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 74 LPLLRRRIG-VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred HHHHHhheE-EEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 11233 6665432 112222 23444555443333 3444444444566666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|.|+..... ...++..+.++ +.++|++||+.+.+..++++.
T Consensus 153 --~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i 207 (214)
T TIGR02673 153 --VNSPPLLLADEPTGNLDPDLSER-ILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRV 207 (214)
T ss_pred --hCCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEE
Confidence 89999999999999999776554 44455555554 889999999999988877654
No 47
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.68 E-value=3.2e-16 Score=164.11 Aligned_cols=144 Identities=22% Similarity=0.162 Sum_probs=104.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++++++.| +.++++|.+. +|++++|+||||+|||||||++++..-.
T Consensus 3 ~~l~~~~l~~~~---------~l~~vs~~i~----~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 3 PVLEVRGLSVKG---------AVRDVSFEVR----AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP 69 (182)
T ss_pred cEEEEeccEEEe---------eecceEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH
Confidence 578999988754 7889999987 7899999999999999999999875311
Q ss_pred -----hhccccccccc------cccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChH
Q 040956 852 -----AQLGCFVPCEM------CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTF 920 (1085)
Q Consensus 852 -----aqiG~~VPa~~------a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~ 920 (1085)
.++| |+|++. ...++.+.+.... .+|..+.....++++| +.+|+++|||||+.|.|+.
T Consensus 70 ~~~~~~~i~-~~~q~~~~~~~~~~~t~~e~l~~~~--------~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 70 RDAIRAGIA-YVPEDRKREGLVLDLSVAENIALSS--------LLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred HHHHhCCeE-EecCCcccCcccCCCcHHHHHHHHh--------hcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCHH
Confidence 1222 444431 1123333321110 1666666666788888 9999999999999999977
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 921 DGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 921 Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.... ...++..+.++ +.++|++||+.+.+..++++.
T Consensus 139 ~~~~-l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v 174 (182)
T cd03215 139 AKAE-IYRLIRELADA-GKAVLLISSELDELLGLCDRI 174 (182)
T ss_pred HHHH-HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE
Confidence 6554 44566666554 789999999999888877654
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.6e-16 Score=170.82 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=108.5
Q ss_pred EEEEcceeeeeecCCCCc----ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------
Q 040956 791 LKIKGLWHPFALGENGGL----PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~----~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------- 850 (1085)
|+++++...| ++. .+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 i~~~~l~~~~-----~~~~~~~~il~~~s~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 2 IELKNVSKVF-----GDTGGKVTALKDVSLSVP----KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL 72 (233)
T ss_pred eEEecceEEc-----cCCCCceeeeecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC
Confidence 6778888777 223 79999999998 799999999999999999999976531
Q ss_pred --------Hhhcccccccccc---ccchHHH---------------------HHHHcCCccccccc---cchhhHHhHHH
Q 040956 851 --------LAQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRIMTG---ESTFLVECTET 895 (1085)
Q Consensus 851 --------laqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i~~~---~Stf~~Em~el 895 (1085)
..++| |+|+... .+++.+. ++.++|..+..... +|..+.....+
T Consensus 73 ~~~~~~~~~~~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 151 (233)
T cd03258 73 SGKELRKARRRIG-MIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGI 151 (233)
T ss_pred CHHHHHHHHhheE-EEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHH
Confidence 12344 6666532 1223332 33445544333333 34444444446
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+++| +.+|+++|||||++|+|+..... ...++..+.++.+.++|++||+.+.+..++++..+
T Consensus 152 a~al--~~~p~lllLDEP~~~LD~~~~~~-l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~ 213 (233)
T cd03258 152 ARAL--ANNPKVLLCDEATSALDPETTQS-ILALLRDINRELGLTIVLITHEMEVVKRICDRVAV 213 (233)
T ss_pred HHHH--hcCCCEEEecCCCCcCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 6666 89999999999999999776544 44566666554478999999999998887775433
No 49
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.68 E-value=2.5e-16 Score=169.20 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=104.9
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++++...|-.. .....+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~~~~-~~~~~il~~~s~~i~----~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 2 ELKNLSKTYGGG-GEKVQALKGVSLSIE----KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred eEeeeEEEecCC-CcceeEEeeeEEEEc----CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH
Confidence 466776666100 001579999999998 799999999999999999999976531
Q ss_pred ---H-hhcccccccccc---ccch---------------------HHHHHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 851 ---L-AQLGCFVPCEMC---VLSL---------------------ADTIFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---l-aqiG~~VPa~~a---~i~~---------------------~d~I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
. .++| |+|+... .+++ ++.++..+|..+.... .+|..+.....++++|
T Consensus 77 ~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 77 AAFRRRHIG-FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHHHhhcEE-EEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 0 1244 6665421 1121 2234455555433333 3444444445567777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|+|+.... ....++..+.++.+.++|++||+.+.+. ++++.
T Consensus 156 --~~~p~lllLDEP~~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v 210 (218)
T cd03255 156 --ANDPKIILADEPTGNLDSETGK-EVMELLRELNKEAGTTIVVVTHDPELAE-YADRI 210 (218)
T ss_pred --ccCCCEEEEcCCcccCCHHHHH-HHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEE
Confidence 8999999999999999976644 4455666666534789999999999876 66543
No 50
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.68 E-value=2.6e-16 Score=167.70 Aligned_cols=142 Identities=19% Similarity=0.172 Sum_probs=101.0
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------Hhhccccccccc----ccc
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------LAQLGCFVPCEM----CVL 865 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------laqiG~~VPa~~----a~i 865 (1085)
..++++++|.+. +|++++|+||||||||||||+++++.- ..++| |+|+.. ...
T Consensus 13 ~~~l~~v~~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~-~~~q~~~~~~~~~ 87 (205)
T cd03226 13 TEILDDLSLDLY----AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG-YVMQDVDYQLFTD 87 (205)
T ss_pred CceeeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceE-EEecChhhhhhhc
Confidence 578999999987 799999999999999999999977531 11344 667653 112
Q ss_pred chHH-----------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 040956 866 SLAD-----------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925 (1085)
Q Consensus 866 ~~~d-----------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~ai 925 (1085)
++.+ .++.++|..+.... .+|..+.....++++| +.+|+++|||||++|.|+.....
T Consensus 88 tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~~p~llllDEPt~~LD~~~~~~- 164 (205)
T cd03226 88 SVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAAL--LSGKDLLIFDEPTSGLDYKNMER- 164 (205)
T ss_pred cHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHH--HhCCCEEEEeCCCccCCHHHHHH-
Confidence 2322 33445555433333 3444444444566666 88999999999999999776554
Q ss_pred HHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 926 a~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
...++..+.++ +.++|++||+.+.+..++++.
T Consensus 165 l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 165 VGELIRELAAQ-GKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE
Confidence 45566666554 889999999999988777654
No 51
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.67 E-value=2.2e-16 Score=169.00 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=106.8
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------h
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------------------A 852 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------------------a 852 (1085)
+++++++.| ++..+.+|++|++. +|++++|+||||+|||||||+++++.-. .
T Consensus 2 ~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 2 ELENVTKRF-----GNVTALDDLNLDIA----DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred EEEeeEEEE-----CCeeeeeceEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccc
Confidence 567777766 34578999999998 7999999999999999999999875310 0
Q ss_pred hcccccccccc---ccchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~ 905 (1085)
++| |+|+... ..++.+ .++.++|..+.... .+|..+.....++++| +.+|
T Consensus 73 ~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral--~~~p 149 (213)
T cd03301 73 DIA-MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAI--VREP 149 (213)
T ss_pred eEE-EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHH--hcCC
Confidence 133 5665431 112222 23445555433333 3444444444566666 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+++|||||++|.|+..... ...++..+.++.++++|++||+.+++..++++.
T Consensus 150 ~llllDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i 201 (213)
T cd03301 150 KVFLMDEPLSNLDAKLRVQ-MRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201 (213)
T ss_pred CEEEEcCCcccCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 9999999999999776554 445666666544789999999999988877654
No 52
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.67 E-value=2.7e-16 Score=167.77 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=107.8
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------H
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------L 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------l 851 (1085)
|+++++.+.| ++..++++++|++. +|++++|+||||+|||||||+++++.- .
T Consensus 1 l~~~~l~~~~-----~~~~~l~~~~~~i~----~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTY-----GKKRVLDDISLHVK----KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEE-----CCeEeEeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHH
Confidence 3567777776 34579999999987 799999999999999999999977531 1
Q ss_pred hhcccccccccc---ccchHHH-----------------HHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEE
Q 040956 852 AQLGCFVPCEMC---VLSLADT-----------------IFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLV 908 (1085)
Q Consensus 852 aqiG~~VPa~~a---~i~~~d~-----------------I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLv 908 (1085)
.++| |+|+... ..++.+. ++.+++..+.... .+|..+.....+++++ +.+|+++
T Consensus 72 ~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~p~ll 148 (208)
T cd03268 72 RRIG-ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL--LGNPDLL 148 (208)
T ss_pred hhEE-EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHH--hcCCCEE
Confidence 2344 6776532 1223332 3344454433322 3444444444566666 8999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|||||++|.|+..... ...++..+.+ .+.++|++||+.+++..++++.
T Consensus 149 llDEPt~~LD~~~~~~-l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 149 ILDEPTNGLDPDGIKE-LRELILSLRD-QGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred EECCCcccCCHHHHHH-HHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEE
Confidence 9999999999776544 4456666665 3789999999999998877754
No 53
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=3.1e-16 Score=167.05 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=118.1
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|+++|+.+.| ++..+.+|++|+++ .|++++++||+||||||+||+|-.++
T Consensus 2 I~~~nvsk~y-----~~~~av~~v~l~I~----~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRY-----GNKKAVDDVNLTIE----EGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhc-----CCceeeeeeeEEec----CCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHH
Confidence 6788888888 46789999999998 79999999999999999999994332
Q ss_pred HHhhcccccccccccc------------------------chHHHHHHHcCCcc-----ccccccchhhHHhHHHHHHHH
Q 040956 850 ILAQLGCFVPCEMCVL------------------------SLADTIFTRLGATD-----RIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 850 ilaqiG~~VPa~~a~i------------------------~~~d~I~trig~~D-----~i~~~~Stf~~Em~ela~iL~ 900 (1085)
+--.|| ||-+...-+ .-++.++..+|... +....+|.......-++++|
T Consensus 73 LRr~IG-YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL- 150 (309)
T COG1125 73 LRRKIG-YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL- 150 (309)
T ss_pred HHHhhh-hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH-
Confidence 222344 333221111 12345666677543 33444555555555688888
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
|.+|.++||||||...|+..+..+-. -+..+.++.+.|++|+|||.+.+-.++++..|..
T Consensus 151 -AadP~ilLMDEPFgALDpI~R~~lQ~-e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~ 210 (309)
T COG1125 151 -AADPPILLMDEPFGALDPITRKQLQE-EIKELQKELGKTIVFVTHDIDEALKLADRIAVMD 210 (309)
T ss_pred -hcCCCeEeecCCccccChhhHHHHHH-HHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec
Confidence 99999999999999999999877554 4455777789999999999999999998876654
No 54
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.67 E-value=8.7e-17 Score=166.09 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=108.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh-----------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ----------------- 853 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq----------------- 853 (1085)
|++.++++.|- .......|++|..+ .|++++|.||||+||||+||+|+.+.+..+
T Consensus 2 l~v~~l~K~y~----~~v~AvrdVSF~ae----~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYG----SKVQAVRDVSFEAE----EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhcc----CHHhhhhheeEEec----cceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHH
Confidence 67778887772 11236899999988 799999999999999999999988764432
Q ss_pred ---cccccccc---ccccc------hHHH---------------HHHHcCCccc---cccccchhhHHhHHHHHHHHhCC
Q 040956 854 ---LGCFVPCE---MCVLS------LADT---------------IFTRLGATDR---IMTGESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 854 ---iG~~VPa~---~a~i~------~~d~---------------I~trig~~D~---i~~~~Stf~~Em~ela~iL~~at 903 (1085)
+| .++.+ +++++ +|-+ +..+++..+. -..+.|+.|..-..+|++| .+
T Consensus 74 rr~IG-Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAl--vh 150 (245)
T COG4555 74 RRKIG-VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARAL--VH 150 (245)
T ss_pred hhhcc-eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHH--hc
Confidence 33 11211 01111 1111 2223333332 3345666666666688888 99
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+|+++|+|||++|+|-... .....++.++... |.++||+||.++.++.+|++.-+
T Consensus 151 ~P~i~vlDEP~sGLDi~~~-r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrviv 205 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTR-RKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIV 205 (245)
T ss_pred CCCeEEEcCCCCCccHHHH-HHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEE
Confidence 9999999999999996553 4455666666554 88999999999999999986433
No 55
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.67 E-value=3.1e-16 Score=167.62 Aligned_cols=142 Identities=23% Similarity=0.219 Sum_probs=99.2
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------Hhhcccccccccc---
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------------LAQLGCFVPCEMC--- 863 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------------laqiG~~VPa~~a--- 863 (1085)
..++++++|.+. +|++++|+||||+|||||||+++++.- ..++| |+|+...
T Consensus 14 ~~il~~vs~~i~----~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~ 88 (211)
T cd03225 14 RPALDDISLTIK----KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVG-LVFQNPDDQF 88 (211)
T ss_pred eeeecceEEEEc----CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhce-EEecChhhhc
Confidence 568999999987 799999999999999999999976531 12234 6666531
Q ss_pred -ccchHHH---------------------HHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCC
Q 040956 864 -VLSLADT---------------------IFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDELGRGTS 918 (1085)
Q Consensus 864 -~i~~~d~---------------------I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs 918 (1085)
..++.+. ++.++|..+.+... +|..+.....++++| +.+|+|+|||||++|.|
T Consensus 89 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral--~~~p~llllDEPt~~LD 166 (211)
T cd03225 89 FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL--AMDPDILLLDEPTAGLD 166 (211)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH--hcCCCEEEEcCCcccCC
Confidence 1222222 34445554333333 344444444466666 89999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 919 ~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.....+ ..++..+.++ ++++|++||+.+++..++++.
T Consensus 167 ~~~~~~~-~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i 204 (211)
T cd03225 167 PAGRREL-LELLKKLKAE-GKTIIIVTHDLDLLLELADRV 204 (211)
T ss_pred HHHHHHH-HHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 7765544 4455566655 889999999999998877654
No 56
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.67 E-value=3.1e-16 Score=168.38 Aligned_cols=154 Identities=23% Similarity=0.261 Sum_probs=107.4
Q ss_pred EEEEcceeeeeecCCCCc----ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------
Q 040956 791 LKIKGLWHPFALGENGGL----PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~----~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------- 850 (1085)
|+++|+...| ++. .+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 l~~~~v~~~~-----~~~~~~~~il~~~sl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 72 (218)
T cd03266 2 ITADALTKRF-----RDVKKTVQAVDGVSFTVK----PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE 72 (218)
T ss_pred eEEEEEEEec-----CCCCccceeecceEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC
Confidence 5678887776 222 69999999997 789999999999999999999987541
Q ss_pred ----Hhhcccccccccc---ccchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+... .+++.+ .++.++|..+.... .+|..+.....+++++
T Consensus 73 ~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (218)
T cd03266 73 PAEARRRLG-FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARAL 151 (218)
T ss_pred HHHHHhhEE-EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHH
Confidence 12344 6665431 122222 23444555433333 3444444444566666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|.|+..... ...++..+.++ ++++|++||+.+.+..++++.
T Consensus 152 --~~~p~illlDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i 206 (218)
T cd03266 152 --VHDPPVLLLDEPTTGLDVMATRA-LREFIRQLRAL-GKCILFSTHIMQEVERLCDRV 206 (218)
T ss_pred --hcCCCEEEEcCCCcCCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEE
Confidence 89999999999999999776544 44566666554 889999999999988877754
No 57
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=3.8e-16 Score=162.23 Aligned_cols=144 Identities=21% Similarity=0.289 Sum_probs=101.4
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc---------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--------------- 856 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--------------- 856 (1085)
++++++..| ++..++++++|+.. +|++++|+||||+|||||||+++++.- ..-|.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~~~~~i~----~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 2 EVRNLSKRY-----GKKTALDDISLTVE----KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred EEEEEEEEE-----CCeeeeeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhh
Confidence 466666666 23468999999997 799999999999999999999987531 11221
Q ss_pred -----cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 040956 857 -----FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931 (1085)
Q Consensus 857 -----~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle 931 (1085)
|+|++... +..+...+++. +|..+.....++++| +.+|+++|||||++|.|...... ...+++
T Consensus 72 ~~~i~~~~q~~~~-------~~~~tv~~~~~--LS~G~~qrv~laral--~~~p~illlDEPt~~LD~~~~~~-l~~~l~ 139 (173)
T cd03230 72 KRRIGYLPEEPSL-------YENLTVRENLK--LSGGMKQRLALAQAL--LHDPELLILDEPTSGLDPESRRE-FWELLR 139 (173)
T ss_pred hccEEEEecCCcc-------ccCCcHHHHhh--cCHHHHHHHHHHHHH--HcCCCEEEEeCCccCCCHHHHHH-HHHHHH
Confidence 33333211 00011112221 666666666788888 99999999999999999776554 445666
Q ss_pred HHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 932 QLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 932 ~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.+.++ +.++|++||+.+++..++++.
T Consensus 140 ~~~~~-g~tiii~th~~~~~~~~~d~i 165 (173)
T cd03230 140 ELKKE-GKTILLSSHILEEAERLCDRV 165 (173)
T ss_pred HHHHC-CCEEEEECCCHHHHHHhCCEE
Confidence 66665 789999999999988777653
No 58
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=5.6e-16 Score=168.40 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=108.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++++...|-... ....++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 4 ~~l~~~~l~~~~~~~~-~~~~il~~isl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS-VQTDVLHNVSFSIG----EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred ceEEEEeEEEEcCCCC-cceeeEEeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCH
Confidence 5799999988772100 01479999999998 799999999999999999999977531
Q ss_pred -----H--hhcccccccccc---ccchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHH
Q 040956 851 -----L--AQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETA 896 (1085)
Q Consensus 851 -----l--aqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela 896 (1085)
. ..+| |+|+... .+++.+ .++.++|..+.... .+|..+.....++
T Consensus 79 ~~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 79 AAKAELRNQKLG-FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHHHHHHhccEE-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 0 1244 6666532 112222 23445555433333 3444444444466
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
+++ +.+|+++|||||++|+|+.... ....++..+.+..|.++|++||+.+.+..++
T Consensus 158 ~al--~~~p~lllLDEPt~~LD~~~~~-~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~ 213 (233)
T PRK11629 158 RAL--VNNPRLVLADEPTGNLDARNAD-SIFQLLGELNRLQGTAFLVVTHDLQLAKRMS 213 (233)
T ss_pred HHH--hcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC
Confidence 666 8999999999999999976644 3455666665544789999999999887653
No 59
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.67 E-value=5.7e-16 Score=169.94 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=109.5
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
+|++++++..| ++..+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKF-----HGQTVLHGIDLEVK----PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEE-----CCeeeeccceEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc
Confidence 58899998888 34579999999998 799999999999999999999976531
Q ss_pred ----------Hhhcccccccccc---ccchHHH----------------------HHHHcCCcccccc---ccchhhHHh
Q 040956 851 ----------LAQLGCFVPCEMC---VLSLADT----------------------IFTRLGATDRIMT---GESTFLVEC 892 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a---~i~~~d~----------------------I~trig~~D~i~~---~~Stf~~Em 892 (1085)
..++| |||+... ..++.+. ++.++|..+.... .+|..+...
T Consensus 74 ~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 74 SQQKGLIRQLRQHVG-FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred cchhhHHHHhhhhEE-EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 11233 6665432 1222222 2333444332222 334444444
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
..++++| +.+|+++|||||++|+|+..... ...++..+.++ +.++|++||+.+.+..++++..+
T Consensus 153 v~la~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~ 216 (250)
T PRK11264 153 VAIARAL--AMRPEVILFDEPTSALDPELVGE-VLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIF 216 (250)
T ss_pred HHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 4466666 89999999999999999766544 44566666654 88999999999998887775433
No 60
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=2.4e-16 Score=172.15 Aligned_cols=167 Identities=25% Similarity=0.244 Sum_probs=122.7
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|.+.+...-+ +...+.+||+|++. .|+.++|+|||||||||+||+|+++.-
T Consensus 3 i~i~~~~~~~-----~~~~a~~di~l~i~----~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 3 IRINNVKKRF-----GAFGALDDISLDIK----SGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA 73 (345)
T ss_pred eeehhhhhhc-----ccccccccceeeec----CCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc
Confidence 4555555544 44567779999998 789999999999999999999988651
Q ss_pred --Hhhccccccccccc---cchHHHHH-----------------------HHc---CCccccccccchhhHHhHHHHHHH
Q 040956 851 --LAQLGCFVPCEMCV---LSLADTIF-----------------------TRL---GATDRIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 851 --laqiG~~VPa~~a~---i~~~d~I~-----------------------tri---g~~D~i~~~~Stf~~Em~ela~iL 899 (1085)
-..+| ||.++++. ++++|+|- .-+ +..++....+|.....+..+|++|
T Consensus 74 ~~~R~VG-fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 74 VRDRKVG-FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhhccee-EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh
Confidence 13467 77776543 33444431 111 234555556666677777788988
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEe
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFK 970 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~ 970 (1085)
|..|.++|||||++++|..-... ....|..+.++.|++++|+|||.+.+..++++.-+.+..-...+.
T Consensus 153 --A~eP~vLLLDEPf~ALDa~vr~~-lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 153 --AVEPKVLLLDEPFGALDAKVRKE-LRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred --hcCCCeEeecCCchhhhHHHHHH-HHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeC
Confidence 99999999999999988766544 455677777888999999999999999999987777655444443
No 61
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.67 E-value=4.6e-16 Score=166.36 Aligned_cols=153 Identities=24% Similarity=0.282 Sum_probs=105.8
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
++++++.-| ++..+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~l~~~s~~i~----~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 2 EIKNLHKSF-----GDFHVLKGIDLTVK----KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred EEEEEEEEE-----CCeEeecCceEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHH
Confidence 566777666 34578999999987 799999999999999999999987531
Q ss_pred --Hhhcccccccccc---ccchHHH----------------------HHHHcCCcccccc---ccchhhHHhHHHHHHHH
Q 040956 851 --LAQLGCFVPCEMC---VLSLADT----------------------IFTRLGATDRIMT---GESTFLVECTETASVLQ 900 (1085)
Q Consensus 851 --laqiG~~VPa~~a---~i~~~d~----------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL~ 900 (1085)
..++| |+|+... ..++.+. ++.++|....+.. .+|..+.....++++|
T Consensus 73 ~~~~~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al- 150 (213)
T cd03262 73 ELRQKVG-MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL- 150 (213)
T ss_pred HHHhcce-EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH-
Confidence 01233 6665432 1222222 3344454332223 3444444444566666
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||+.|.|+.... ....++..+.+. +.++|++||+.+.+..++++.
T Consensus 151 -~~~p~llllDEP~~~LD~~~~~-~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i 205 (213)
T cd03262 151 -AMNPKVMLFDEPTSALDPELVG-EVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRV 205 (213)
T ss_pred -hcCCCEEEEeCCccCCCHHHHH-HHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 8999999999999999976544 455566666654 789999999999988877754
No 62
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3e-16 Score=173.10 Aligned_cols=158 Identities=23% Similarity=0.226 Sum_probs=109.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------------hhc
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------AQL 854 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------aqi 854 (1085)
|+++++...| ++..+++|++|.+. +|++++|+||||+|||||||+++++.-. ..+
T Consensus 2 l~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADY-----GGKPALEDINLTLE----SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEe-----CCeeeEeeeeEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcE
Confidence 6788888777 34579999999998 7999999999999999999999875311 113
Q ss_pred ccccccccc---ccchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcE
Q 040956 855 GCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSL 907 (1085)
Q Consensus 855 G~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sL 907 (1085)
| |+|+... ..++.+ .++.++|..+.... .+|..+.....++++| +.+|++
T Consensus 73 ~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral--~~~p~l 149 (255)
T PRK11248 73 G-VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARAL--AANPQL 149 (255)
T ss_pred E-EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH--hcCCCE
Confidence 3 5565421 112222 23445555433333 3444444444466666 899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|||||++|.|+..... ...++..+.++.++++|++||+.+.+..++++..+.
T Consensus 150 llLDEPt~~LD~~~~~~-l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l 202 (255)
T PRK11248 150 LLLDEPFGALDAFTREQ-MQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL 202 (255)
T ss_pred EEEeCCCccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999766544 445556664444889999999999998888765443
No 63
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.67 E-value=3.4e-16 Score=163.64 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=106.6
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccc-----------
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE----------- 861 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~----------- 861 (1085)
++++.+-| ++..++++++|.+. +|++++|+||||+|||||||+++++. -+.-|......
T Consensus 2 ~~~l~~~~-----~~~~~l~~~~~~i~----~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~ 71 (180)
T cd03214 2 VENLSVGY-----GGRTVLDDLSLSIE----AGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLASLSPKEL 71 (180)
T ss_pred eeEEEEEE-----CCeeeEeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCcCCHHHH
Confidence 44555545 23468999999987 79999999999999999999998853 23334221110
Q ss_pred ccccchHHHHHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 040956 862 MCVLSLADTIFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN 938 (1085)
Q Consensus 862 ~a~i~~~d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~ 938 (1085)
...++++..++..+|..+.+... +|..+.....+++++ +.+|+++|||||++|.|...... ...++..+.++.+
T Consensus 72 ~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral--~~~p~llllDEP~~~LD~~~~~~-~~~~l~~~~~~~~ 148 (180)
T cd03214 72 ARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARAL--AQEPPILLLDEPTSHLDIAHQIE-LLELLRRLARERG 148 (180)
T ss_pred HHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCHHHHHH-HHHHHHHHHHhcC
Confidence 01234444466777776554443 455444455566667 89999999999999999766544 4456666655437
Q ss_pred ceEEEEEechhHHHhhcCccc
Q 040956 939 CRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 939 ~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+++|++||+.+.+..++++..
T Consensus 149 ~tiii~sh~~~~~~~~~d~~~ 169 (180)
T cd03214 149 KTVVMVLHDLNLAARYADRVI 169 (180)
T ss_pred CEEEEEeCCHHHHHHhCCEEE
Confidence 899999999999887776543
No 64
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.67 E-value=5.2e-16 Score=170.91 Aligned_cols=160 Identities=24% Similarity=0.329 Sum_probs=112.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------hhccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------AQLGCFV 858 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------aqiG~~V 858 (1085)
++|+++++...| ++..++++++|.+. +|++++|+||||+|||||||+|+++.-. ..+| |+
T Consensus 3 ~~l~~~~l~~~~-----~~~~vl~~vs~~i~----~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~-~v 72 (251)
T PRK09544 3 SLVSLENVSVSF-----GQRRVLSDVSLELK----PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIG-YV 72 (251)
T ss_pred cEEEEeceEEEE-----CCceEEEeEEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEE-Ee
Confidence 478999998888 34579999999997 7999999999999999999999875311 1233 66
Q ss_pred cccccc-----cch--------------HHHHHHHcCCccccccccchhh---HHhHHHHHHHHhCCCCcEEEEeCCCCC
Q 040956 859 PCEMCV-----LSL--------------ADTIFTRLGATDRIMTGESTFL---VECTETASVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 859 Pa~~a~-----i~~--------------~d~I~trig~~D~i~~~~Stf~---~Em~ela~iL~~at~~sLvLLDEpgrG 916 (1085)
|+.... .++ +..++..+|..+.+......++ .....++++| +.+|+++|||||++|
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral--~~~p~lllLDEPt~~ 150 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARAL--LNRPQLLVLDEPTQG 150 (251)
T ss_pred ccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCCcC
Confidence 664211 111 1123445565544433333444 3344466666 899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 917 Ts~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|+..... ...++..+.++.++++|++||+.+++..++++..+.
T Consensus 151 LD~~~~~~-l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 151 VDVNGQVA-LYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred CCHHHHHH-HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99776544 444555565544789999999999998888765443
No 65
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.67 E-value=4.2e-16 Score=166.89 Aligned_cols=154 Identities=25% Similarity=0.319 Sum_probs=104.6
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------Hhhccc
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------LAQLGC 856 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------laqiG~ 856 (1085)
++|+.+.| ++..+.++++|++. +|++++|+||||+|||||||+++++.- ..++|
T Consensus 2 ~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~- 71 (213)
T cd03235 2 VEDLTVSY-----GGHPVLEDVSFEVK----PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG- 71 (213)
T ss_pred cccceeEE-----CCEEeeecceeEEc----CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheE-
Confidence 44555555 23568999999997 799999999999999999999977531 12344
Q ss_pred ccccccc-----ccchHHH-------------------------HHHHcCCccccccccchhhHH---hHHHHHHHHhCC
Q 040956 857 FVPCEMC-----VLSLADT-------------------------IFTRLGATDRIMTGESTFLVE---CTETASVLQKAT 903 (1085)
Q Consensus 857 ~VPa~~a-----~i~~~d~-------------------------I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at 903 (1085)
|+|+... ..++.+. ++..+|..+......+.++.+ ...++++| +.
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al--~~ 149 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL--VQ 149 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH--Hc
Confidence 6666431 1222222 334445443333333334433 44466666 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+|+++|||||++|+|+.....+. .++..+.++ +.++|++||+.+++..++++..+
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 150 DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRRE-GMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEE
Confidence 99999999999999977755544 455555553 78999999999998888776443
No 66
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.3e-16 Score=167.41 Aligned_cols=153 Identities=21% Similarity=0.277 Sum_probs=105.6
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------Hhhc
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-----------------LAQL 854 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-----------------laqi 854 (1085)
+++++.+.| ++..++++++|++. +|++++|+||||+||||||++++++.- ..++
T Consensus 2 ~~~~l~~~~-----~~~~~l~~v~~~i~----~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 2 EVENVTKRF-----GRVTALDDISFSVE----KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred EEEEEEEEE-----CCEEEEeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccE
Confidence 567777766 34578999999987 799999999999999999999987531 1223
Q ss_pred ccccccccc---ccchHH---------------------HHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcE
Q 040956 855 GCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSL 907 (1085)
Q Consensus 855 G~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sL 907 (1085)
| |+|+... ..++.+ .++..+|..+... ..+|..+.....++++| +.+|++
T Consensus 73 ~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al--~~~p~~ 149 (210)
T cd03269 73 G-YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV--IHDPEL 149 (210)
T ss_pred E-EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHH--hcCCCE
Confidence 3 6665421 122222 2334444433222 23444444444566666 899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+|||||++|.|+..... ...++..+.++ ++++|++||+.+++..++++.
T Consensus 150 lllDEP~~~LD~~~~~~-~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i 198 (210)
T cd03269 150 LILDEPFSGLDPVNVEL-LKDVIRELARA-GKTVILSTHQMELVEELCDRV 198 (210)
T ss_pred EEEeCCCcCCCHHHHHH-HHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEE
Confidence 99999999999776544 44456666554 789999999999988777653
No 67
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=4.6e-16 Score=169.73 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=109.3
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
.|+++++...| ++..+++|++|++. +|++++|+||||+|||||||+++++.-.
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 2 SIEVRNVSKRF-----GDFVALDDVSLDIP----SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72 (239)
T ss_pred EEEEEeEEEEE-----CCEEeeeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc
Confidence 37888888877 34679999999998 7999999999999999999999875310
Q ss_pred -hhcccccccccc---ccchHH-------------------------HHHHHcCCccccc---cccchhhHHhHHHHHHH
Q 040956 852 -AQLGCFVPCEMC---VLSLAD-------------------------TIFTRLGATDRIM---TGESTFLVECTETASVL 899 (1085)
Q Consensus 852 -aqiG~~VPa~~a---~i~~~d-------------------------~I~trig~~D~i~---~~~Stf~~Em~ela~iL 899 (1085)
.++| |+|+... ..++.+ .++.++|..+... ..+|..+.....++++|
T Consensus 73 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 73 ERNVG-FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred ccceE-EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 1233 5665421 112222 2344445433222 23444444445566666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.+|+++|||||++|.|+..... ...++..+.++.++++|++||+.+.+..++++..
T Consensus 152 --~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~ 208 (239)
T cd03296 152 --AVEPKVLLLDEPFGALDAKVRKE-LRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV 208 (239)
T ss_pred --hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 89999999999999999776544 4556666665447899999999998887777543
No 68
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.66 E-value=2.8e-16 Score=177.39 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=114.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.++++++...| ++..+++|++|.+. +|++++|+||||+|||||||+++++.
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~----~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 2 SIRVSSLTKLY-----GTQNALDEVSFEAQ----KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEEEEEEEE-----CCEEEEEEeEEEEe----CCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHH
Confidence 37888888887 45679999999998 79999999999999999999997653
Q ss_pred HHhhcccccccccc---ccchH---------------------HHHHHHcCCccccc---cccchhhHHhHHHHHHHHhC
Q 040956 850 ILAQLGCFVPCEMC---VLSLA---------------------DTIFTRLGATDRIM---TGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 850 ilaqiG~~VPa~~a---~i~~~---------------------d~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~a 902 (1085)
+..++| |+|+... .+++. +.++..+|..+... ..+|..+.....++++| +
T Consensus 73 ~~~~ig-~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al--~ 149 (301)
T TIGR03522 73 VQRNIG-YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL--I 149 (301)
T ss_pred HHhceE-EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH--h
Confidence 122455 7776531 12222 23344555543333 33455554455577777 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.+|.++|||||+.|.|+.... ..+.++..+. + +.++|++||+++.+..++++..+..
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~-~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~ 206 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLV-EIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIIN 206 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHH-HHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 999999999999999977654 4555666664 3 6899999999999999998866553
No 69
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=5e-16 Score=178.72 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=117.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++++++.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-.
T Consensus 5 ~~l~~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 5 NFVVLKNITKRF-----GSNTVIDNLNLTIK----QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred cEEEEEeEEEEE-----CCeEEEeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH
Confidence 689999999988 45678999999997 7899999999999999999999875411
Q ss_pred --hhcccccccccccc---chHHH---------------------HHHHcCCccc---cccccchhhHHhHHHHHHHHhC
Q 040956 852 --AQLGCFVPCEMCVL---SLADT---------------------IFTRLGATDR---IMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 852 --aqiG~~VPa~~a~i---~~~d~---------------------I~trig~~D~---i~~~~Stf~~Em~ela~iL~~a 902 (1085)
..+| ||+++.+-+ ++.+. +...+|..+. ....+|..+.....+|++| +
T Consensus 76 ~~r~ig-~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL--~ 152 (351)
T PRK11432 76 QQRDIC-MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARAL--I 152 (351)
T ss_pred HHCCEE-EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH--H
Confidence 2344 666654322 22332 3344454332 2334444444445577777 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.+|+|+|||||++|+|+.-...+. ..+..+.++.+.|+|++|||.+.+..++++..+..
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~ 211 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN 211 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 999999999999999987766544 45566666568999999999999988888776654
No 70
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.66 E-value=4.6e-16 Score=179.23 Aligned_cols=162 Identities=23% Similarity=0.223 Sum_probs=117.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++|+++.| ++..+++|++|.+. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 3 PYLSIDNIRKRF-----GAFTALKDISLSVK----KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP 73 (353)
T ss_pred cEEEEEEEEEEe-----CCeEEEEeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH
Confidence 468999999988 34568999999987 789999999999999999999987641
Q ss_pred -Hhhcccccccccccc---chH---------------------HHHHHHcCCccccccc---cchhhHHhHHHHHHHHhC
Q 040956 851 -LAQLGCFVPCEMCVL---SLA---------------------DTIFTRLGATDRIMTG---ESTFLVECTETASVLQKA 902 (1085)
Q Consensus 851 -laqiG~~VPa~~a~i---~~~---------------------d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~a 902 (1085)
...+| |||+..+.+ ++. +.++..+|..+..... +|..+.....+|++| +
T Consensus 74 ~~r~ig-~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL--~ 150 (353)
T TIGR03265 74 QKRDYG-IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARAL--A 150 (353)
T ss_pred HHCCEE-EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHH--h
Confidence 11244 677654322 222 2345555654433333 444444444577777 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeec
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~ 963 (1085)
.+|+++|||||++|+|......+. ..+..+.++.+.|+|++||+.+.+..++++..+...
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~ 210 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999977765544 455566665689999999999999988887665543
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=5.2e-16 Score=169.10 Aligned_cols=156 Identities=21% Similarity=0.233 Sum_probs=106.8
Q ss_pred EEEcceeeeeecCCCC-cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 792 KIKGLWHPFALGENGG-LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~-~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
+++++.+.| ++ ..+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 2 EVENLSKTY-----PNGKKALKDVSLSIN----PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred EEeeEEEec-----CCccEEEecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhH
Confidence 566777666 23 579999999998 799999999999999999999976531
Q ss_pred ----Hhhcccccccccc---ccchHHH-----------------------------HHHHcCCcccccc---ccchhhHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLADT-----------------------------IFTRLGATDRIMT---GESTFLVE 891 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d~-----------------------------I~trig~~D~i~~---~~Stf~~E 891 (1085)
...+| |+|+... ..++.+. ++..++..+.... .+|..+..
T Consensus 73 ~~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 73 LRQLRRQIG-MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHHhccE-EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 01233 6665431 1222222 2334444332222 34444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
...++++| +.+|+++|||||++|.|+..... ...++..+.++.+.++|++||+.+.+..++++..+
T Consensus 152 rv~la~al--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~ 217 (241)
T cd03256 152 RVAIARAL--MQQPKLILADEPVASLDPASSRQ-VMDLLKRINREEGITVIVSLHQVDLAREYADRIVG 217 (241)
T ss_pred HHHHHHHH--hcCCCEEEEeCccccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 44566666 89999999999999999766544 45566666654478999999999999888876433
No 72
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.66 E-value=4.6e-16 Score=169.10 Aligned_cols=155 Identities=24% Similarity=0.270 Sum_probs=105.5
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
++++++..| ++..++++++|++. +|++++|+||||||||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 2 EVRGLTKRF-----GGLVALDDVSFSVR----PGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred eeeeeEEEE-----CCEEEecCceEEec----CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHH
Confidence 566777766 34568999999997 799999999999999999999977531
Q ss_pred H-hhcccccccccc---ccchHH-------------------------------HHHHHcCCccccccccchhhHH---h
Q 040956 851 L-AQLGCFVPCEMC---VLSLAD-------------------------------TIFTRLGATDRIMTGESTFLVE---C 892 (1085)
Q Consensus 851 l-aqiG~~VPa~~a---~i~~~d-------------------------------~I~trig~~D~i~~~~Stf~~E---m 892 (1085)
. ..+| |+|+... .+++.+ .++..+|..+......+.++.+ .
T Consensus 73 ~~~~i~-~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 73 ARLGIG-RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HhcCEE-EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 0 1133 6666431 112222 2333444443333333334433 3
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
..++++| +.+|+++|||||++|.|+..... .+.++..+.+ .++++|++||+.+++..++++..+
T Consensus 152 v~la~al--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~ 215 (236)
T cd03219 152 LEIARAL--ATDPKLLLLDEPAAGLNPEETEE-LAELIRELRE-RGITVLLVEHDMDVVMSLADRVTV 215 (236)
T ss_pred HHHHHHH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 4466666 89999999999999999766444 4556666665 488999999999999888876433
No 73
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.66 E-value=2.9e-16 Score=178.23 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=120.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.++++++++.| ++..+.+|++|++. +|+++.|.||+||||||+||+||++.-.
T Consensus 4 ~~l~i~~v~k~y-----g~~~av~~isl~i~----~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSF-----GDFTAVDDISLDIK----KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeec-----CCeeEEecceeeec----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence 579999999999 67899999999998 8999999999999999999999986522
Q ss_pred --hhccccccccccccc---hHHH----------------------HHHHcCCccccccccchhhHH---hHHHHHHHHh
Q 040956 852 --AQLGCFVPCEMCVLS---LADT----------------------IFTRLGATDRIMTGESTFLVE---CTETASVLQK 901 (1085)
Q Consensus 852 --aqiG~~VPa~~a~i~---~~d~----------------------I~trig~~D~i~~~~Stf~~E---m~ela~iL~~ 901 (1085)
-.+| +|+++++-+| +.++ ++..++..+......+..+++ -..+|++|
T Consensus 75 ~kR~ig-~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL-- 151 (352)
T COG3842 75 EKRPIG-MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL-- 151 (352)
T ss_pred hhcccc-eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHh--
Confidence 1344 5666554333 3333 233333333333333333333 33377777
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEE
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACA 968 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~ 968 (1085)
+.+|.++|||||.+.+|..-+..+-. -+..+.++.|.|+|++|||.+.+..++++..|.+..-...
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~-Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRK-ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHH-HHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 99999999999988888666555444 4455666679999999999999999999887766544333
No 74
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.66 E-value=9.6e-16 Score=165.86 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=109.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|.+++++..| ++..+.+|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 6 ~~i~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLA-----GDAKILNNISFSLR----AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEee-----CCceeeeccEEEEc----CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH
Confidence 579999999888 34679999999998 799999999999999999999987531
Q ss_pred ---Hhhccccccccccc--cchH-------------------HHHHHHcCCcc-ccc---cccchhhHHhHHHHHHHHhC
Q 040956 851 ---LAQLGCFVPCEMCV--LSLA-------------------DTIFTRLGATD-RIM---TGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 851 ---laqiG~~VPa~~a~--i~~~-------------------d~I~trig~~D-~i~---~~~Stf~~Em~ela~iL~~a 902 (1085)
...+| |+|+...- .++. ..++..+|..+ ... ..+|..+.....++++| +
T Consensus 77 ~~~~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral--~ 153 (225)
T PRK10247 77 EIYRQQVS-YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL--Q 153 (225)
T ss_pred HHHHhccE-EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH--h
Confidence 11233 66654211 1222 23445555532 222 23444444444567777 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.+|+++|||||++|.|+.... ....++..+.++.+.++|++||+.+++. .+++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~-~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~ 208 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKH-NVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVI 208 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEE
Confidence 999999999999999976644 3445556665544789999999999886 465443
No 75
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.66 E-value=4.5e-16 Score=168.72 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=105.9
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++++...| ++..++++++|.+. +|++++|+||||||||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 2 RAENLSKRY-----GKRKVVNGVSLSVK----QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR 72 (232)
T ss_pred eEEEEEEEe-----CCEEeeccceeEec----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHH
Confidence 567777776 34579999999987 799999999999999999999977531
Q ss_pred H-hhcccccccccc---ccchHH---------------------HHHHHcCCccccccc---cchhhHHhHHHHHHHHhC
Q 040956 851 L-AQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMTG---ESTFLVECTETASVLQKA 902 (1085)
Q Consensus 851 l-aqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~a 902 (1085)
. ..+| |+|+... .+++.+ .++..+|..+..... +|..+.....++++| +
T Consensus 73 ~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al--~ 149 (232)
T cd03218 73 ARLGIG-YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARAL--A 149 (232)
T ss_pred HhccEE-EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH--h
Confidence 0 1233 6665431 112222 233444444333333 344444344466666 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.+|.++|||||++|.|+..... ...++..+.+. +.++|++||+.+.+..++++..
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~-~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~ 204 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQD-IQKIIKILKDR-GIGVLITDHNVRETLSITDRAY 204 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999776544 45566666654 7899999999998888887543
No 76
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.66 E-value=5.6e-16 Score=172.24 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=109.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+...| ++..+++|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTR-----GNRCIFDNISLTVP----RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccCh
Confidence 579999998877 34679999999998 799999999999999999999976531
Q ss_pred ------Hhhcccccccccc---ccchHHHH----------------------HHHcCCccccccccchhhHH---hHHHH
Q 040956 851 ------LAQLGCFVPCEMC---VLSLADTI----------------------FTRLGATDRIMTGESTFLVE---CTETA 896 (1085)
Q Consensus 851 ------laqiG~~VPa~~a---~i~~~d~I----------------------~trig~~D~i~~~~Stf~~E---m~ela 896 (1085)
..++| |+|+... .+++.+.+ +.++|..+......+.++.+ ...++
T Consensus 77 ~~~~~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 77 SRLYTVRKRMS-MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hhHHHHhhcEE-EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 11233 6666532 12233332 33344433222223334443 34466
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|.++|||||++|.|+..... ...++..+.++.++++|++||+.+.+..++++.
T Consensus 156 ral--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v 214 (269)
T PRK11831 156 RAI--ALEPDLIMFDEPFVGQDPITMGV-LVKLISELNSALGVTCVVVSHDVPEVLSIADHA 214 (269)
T ss_pred HHH--hcCCCEEEEcCCCccCCHHHHHH-HHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEE
Confidence 666 89999999999999999766444 445566665544789999999999988887754
No 77
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5e-16 Score=180.08 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=114.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++++.+.| ++..++++++|++. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~l~i~~l~~~~-----~~~~vl~~vsl~i~----~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAY-----GDVVISKDINLDIH----EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEe-----CCeEEEeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh
Confidence 58899999888 34578999999997 789999999999999999999987531
Q ss_pred Hhhccccccccccc---cchHHH---------------------HHHHcCCcccccc---ccchhhHHhHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMCV---LSLADT---------------------IFTRLGATDRIMT---GESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a~---i~~~d~---------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at 903 (1085)
...+| |||++... +++.+. ++..+|..+.... .+|..+.....+|++| +.
T Consensus 74 ~~~i~-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL--~~ 150 (369)
T PRK11000 74 ERGVG-MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL--VA 150 (369)
T ss_pred HCCEE-EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH--hc
Confidence 11244 67765321 222222 3445555433333 3444444445577777 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+|+++|||||++|+|+.....+ ..++..+.++.+.|+|++||+.+++..++++..+..
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l-~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~ 208 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 208 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999997765544 445566665558899999999999988888765543
No 78
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=6.9e-16 Score=165.73 Aligned_cols=157 Identities=18% Similarity=0.088 Sum_probs=110.1
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------- 850 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------- 850 (1085)
.++|.++++.+.+ ++..+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 9 ~~~l~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 9 PPLLAAHALAFSR-----NEEPVFGPLDFHVD----AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79 (214)
T ss_pred cceEEEeeEEEec-----CCceeeecceEEEC----CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchh
Confidence 3679999999887 34579999999998 799999999999999999999987531
Q ss_pred -Hhhcccccccccc---ccchHHH------------------HHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCC
Q 040956 851 -LAQLGCFVPCEMC---VLSLADT------------------IFTRLGATDRIMT---GESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 851 -laqiG~~VPa~~a---~i~~~d~------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~ 905 (1085)
...+| |+|+... .+++.+. ++..++..+.... .+|..+.....+++++ +.+|
T Consensus 80 ~~~~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~~p 156 (214)
T PRK13543 80 RSRFMA-YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW--LSPA 156 (214)
T ss_pred hhhceE-EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHH--hcCC
Confidence 01133 6665421 1223332 3334444322222 3334333344466666 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+++|||||+.|+|..... ....++..+.++ ++++|++||+++++..++++.
T Consensus 157 ~llllDEPt~~LD~~~~~-~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 157 PLWLLDEPYANLDLEGIT-LVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRM 207 (214)
T ss_pred CEEEEeCCcccCCHHHHH-HHHHHHHHHHhC-CCEEEEEecChhhhhhhcceE
Confidence 999999999999977644 455667666654 789999999999998887654
No 79
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.66 E-value=3.8e-16 Score=176.44 Aligned_cols=146 Identities=19% Similarity=0.244 Sum_probs=105.1
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------HHhhcccccccccc---
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------ILAQLGCFVPCEMC--- 863 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------ilaqiG~~VPa~~a--- 863 (1085)
+..+++|++|++. +|++++|+||||||||||||+++++. +..++| |+|+...
T Consensus 5 ~~~~l~~vs~~i~----~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~ 79 (302)
T TIGR01188 5 DFKAVDGVNFKVR----EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDE 79 (302)
T ss_pred CeeEEeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCC
Confidence 3568899999997 79999999999999999999997653 122455 7776531
Q ss_pred ccch---------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 040956 864 VLSL---------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLVILDELGRGTST 919 (1085)
Q Consensus 864 ~i~~---------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrGTs~ 919 (1085)
.+++ ++.++..+|..+......++++.+ ...+|++| +.+|.++|||||++|.|+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al--~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASL--IHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCCcCCCH
Confidence 1122 223455566554333334444444 44466666 899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 920 ~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
..... .+.++..+.++ |.++|++||+.+.+..++++..+.
T Consensus 158 ~~~~~-l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l 197 (302)
T TIGR01188 158 RTRRA-IWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAII 197 (302)
T ss_pred HHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEE
Confidence 76544 55566777655 899999999999999888876554
No 80
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.66 E-value=5.3e-16 Score=181.03 Aligned_cols=159 Identities=21% Similarity=0.230 Sum_probs=116.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
++|+++|+...| ++..++++++|.+. +|++++|+||||+|||||||+++++.
T Consensus 2 ~~L~~~nls~~y-----~~~~vL~~vs~~i~----~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 2 PMIDVSDLSVEF-----GDTTVLDGVDLSVR----EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA 72 (402)
T ss_pred ceEEEeeEEEEE-----CCEEEEEeeEEEEC----CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH
Confidence 468999999888 45789999999998 89999999999999999999998753
Q ss_pred --HHhhcccccccccc---ccchH-------------------------HHHHHHcCCcccccc---ccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMC---VLSLA-------------------------DTIFTRLGATDRIMT---GESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a---~i~~~-------------------------d~I~trig~~D~i~~---~~Stf~~Em~ela 896 (1085)
+..++| |||++.. .++.. +.++..+|..+.... .+|..+.....+|
T Consensus 73 ~~~~~~ig-~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 73 RAASRRVA-SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHHhcceE-EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 112355 6666431 12222 234445555433333 3444444445577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
++| +.+|.++|||||+.|+|+..... ...++..+.++ +.|+|++||+++++..++++..+.
T Consensus 152 rAL--~~~P~iLLLDEPtsgLD~~~~~~-l~~lL~~l~~~-g~TIIivsHdl~~~~~~adrii~l 212 (402)
T PRK09536 152 RAL--AQATPVLLLDEPTASLDINHQVR-TLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLL 212 (402)
T ss_pred HHH--HcCCCEEEEECCcccCCHHHHHH-HHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 777 89999999999999999876554 44566777654 889999999999999988876544
No 81
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=8e-16 Score=170.56 Aligned_cols=158 Identities=14% Similarity=0.124 Sum_probs=111.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++++++.| ++..++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 10 ~~l~i~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 10 TTFALRNVSFRV-----PGRTLLHPLSLTFP----AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS 80 (265)
T ss_pred ceEEEeeEEEEE-----CCEEEEeeeeeEEc----CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH
Confidence 579999999888 34579999999998 799999999999999999999987531
Q ss_pred ---Hhhcccccccccc---ccchHH-------------------------HHHHHcCCccccc---cccchhhHHhHHHH
Q 040956 851 ---LAQLGCFVPCEMC---VLSLAD-------------------------TIFTRLGATDRIM---TGESTFLVECTETA 896 (1085)
Q Consensus 851 ---laqiG~~VPa~~a---~i~~~d-------------------------~I~trig~~D~i~---~~~Stf~~Em~ela 896 (1085)
...+| |+|+... .+++.+ .++.+++..+.+. ..+|..+.....++
T Consensus 81 ~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 81 KAFARKVA-YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHHhhheE-EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 11234 6665421 112222 2344445433222 23444444455577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++| +.+|+++|||||++|+|...... ...++..+.+..++++|++||+.+++..++++..
T Consensus 160 ral--~~~p~lllLDEPt~~LD~~~~~~-~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~ 219 (265)
T PRK10575 160 MLV--AQDSRCLLLDEPTSALDIAHQVD-VLALVHRLSQERGLTVIAVLHDINMAARYCDYLV 219 (265)
T ss_pred HHH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 777 89999999999999999666443 4456666665447899999999999888777543
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.66 E-value=6.2e-16 Score=168.36 Aligned_cols=154 Identities=27% Similarity=0.303 Sum_probs=106.1
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...| ++..++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAY-----GARRALDDVSFTVR----PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh
Confidence 6788888777 34579999999998 799999999999999999999977531
Q ss_pred Hhhcccccccccc---ccchHH---------------------HHHHHcCCccccccc---cchhhHHhHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMTG---ESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at 903 (1085)
..++| |+|+... ..++.+ .++..+|..+..... +|..+.....++++| +.
T Consensus 73 ~~~i~-~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral--~~ 149 (236)
T TIGR03864 73 LARLG-VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARAL--LH 149 (236)
T ss_pred hhhEE-EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH--hc
Confidence 11233 6665431 122222 234445544333333 344333344466666 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+|+++|||||++|.|+.....+. .++..+.++.+.++|++||+.+++.. +++.
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i 202 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQGLSVLWATHLVDEIEA-DDRL 202 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEecChhhHhh-CCEE
Confidence 99999999999999977765544 45556654347899999999999864 6543
No 83
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.65 E-value=4.4e-16 Score=160.41 Aligned_cols=150 Identities=23% Similarity=0.230 Sum_probs=102.6
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccc-cccc-cccchH
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV-PCEM-CVLSLA 868 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~V-Pa~~-a~i~~~ 868 (1085)
|+++++.+.| ++..+.++++|.+. +|++++|+||||+|||||||+++++.- ..-|... .... ......
T Consensus 1 l~~~~l~~~~-----~~~~vl~~i~~~i~----~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRF-----GGVKALDGVSLSVR----RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEE-----CCeEEEeeeEEEEe----CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHH
Confidence 3567777777 24579999999998 899999999999999999999988532 2233211 1111 011111
Q ss_pred HHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 869 DTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 869 d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
+.....++.. ..+|..+.....+++++ +.+|+++|||||++|+|...... ...++..+.++ +.++|++||++
T Consensus 71 ~~~~~~i~~~----~qLS~G~~qrl~laral--~~~p~illlDEP~~~LD~~~~~~-l~~~l~~~~~~-~~tiii~sh~~ 142 (163)
T cd03216 71 DARRAGIAMV----YQLSVGERQMVEIARAL--ARNARLLILDEPTAALTPAEVER-LFKVIRRLRAQ-GVAVIFISHRL 142 (163)
T ss_pred HHHhcCeEEE----EecCHHHHHHHHHHHHH--hcCCCEEEEECCCcCCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCH
Confidence 1111122211 11666666666677777 89999999999999999776544 44555566554 78999999999
Q ss_pred hHHHhhcCcc
Q 040956 949 PLTKEFASHP 958 (1085)
Q Consensus 949 el~~~~~~~~ 958 (1085)
+.+..++++.
T Consensus 143 ~~~~~~~d~~ 152 (163)
T cd03216 143 DEVFEIADRV 152 (163)
T ss_pred HHHHHhCCEE
Confidence 9888777653
No 84
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.4e-16 Score=177.57 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=112.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+.+.|-.. .+...+++|++|++. +|++++|+||||||||||||+++++.-
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~----~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIP----AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHH
Confidence 6788888877200 013579999999998 799999999999999999999976531
Q ss_pred ----Hhhcccccccccc---ccchHH---------------------HHHHHcCCccccccc---cchhhHHhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMTG---ESTFLVECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~~---~Stf~~Em~ela~iL 899 (1085)
..++| |||+... ..++.+ .++..+|..+..... +|..+.....+|++|
T Consensus 77 ~~~~~~~ig-~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 155 (343)
T PRK11153 77 LRKARRQIG-MIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHhcCEE-EEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 12355 6776532 122222 234445554433333 444444444577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|+++|||||++|+|+..... .+.++..+.++.|.|+|++||+++.+..++++..+.
T Consensus 156 --~~~p~iLlLDEPts~LD~~~~~~-l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 156 --ASNPKVLLCDEATSALDPATTRS-ILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred --HcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 89999999999999999776544 445666666545889999999999998888765443
No 85
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.65 E-value=8.6e-16 Score=164.41 Aligned_cols=154 Identities=15% Similarity=0.200 Sum_probs=105.6
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
++++++..|- +...++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~~----~~~~~l~~~sl~i~----~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 2 EFINVTKTYP----NGTAALDGINISIS----AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred EEEEEEEEeC----CCceeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 4666666661 12479999999997 799999999999999999999977531
Q ss_pred ---Hhhccccccccccc---cchHH---------------------HHHHHcCCccccc---cccchhhHHhHHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRIM---TGESTFLVECTETASVLQ 900 (1085)
Q Consensus 851 ---laqiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i~---~~~Stf~~Em~ela~iL~ 900 (1085)
..+++ |+|++... .++.+ .++.++|..+... ..+|..+.....++++|
T Consensus 74 ~~~~~~i~-~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral- 151 (214)
T cd03292 74 PYLRRKIG-VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI- 151 (214)
T ss_pred HHHHHheE-EEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH-
Confidence 11233 66654311 12222 2344455443322 33444444455567777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|.|+..... ...++..+.++ +.++|++||+.+.+..++++.
T Consensus 152 -~~~p~llllDEPt~~LD~~~~~~-~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i 206 (214)
T cd03292 152 -VNSPTILIADEPTGNLDPDTTWE-IMNLLKKINKA-GTTVVVATHAKELVDTTRHRV 206 (214)
T ss_pred -HcCCCEEEEeCCCCcCCHHHHHH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 89999999999999999776544 44555666554 889999999999988777653
No 86
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.1e-15 Score=176.35 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=116.2
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++++++-|- ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~----~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVA----DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEc----CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 588999988772 24579999999998 789999999999999999999987641
Q ss_pred Hhhccccccccccc---cchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at 903 (1085)
-..+| |||+..+- +++.+ .++..+|..+.... .+|..+.....+|++| +.
T Consensus 75 ~r~ig-~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL--~~ 151 (356)
T PRK11650 75 DRDIA-MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAI--VR 151 (356)
T ss_pred HCCEE-EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH--hc
Confidence 12345 66665422 22222 34455565443333 3444444445577777 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+|+|+|||||++|+|..-...+. ..+..+.++.+.|+|++||+.+.+..++++..+..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~ 209 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMN 209 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999977765544 45556666568999999999999988888766554
No 87
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7.3e-16 Score=171.83 Aligned_cols=160 Identities=21% Similarity=0.167 Sum_probs=112.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
+.|+++++...|- +...+.+|++|.+. +|++++|+||||+|||||||+++++.
T Consensus 3 ~~l~~~~l~~~~~----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 3 NIIEVEDLHFRYK----DGTKALKGLSLSIP----EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE 74 (274)
T ss_pred ceEEEEEEEEEeC----CCCeeeeeEEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence 3688999988772 23579999999998 79999999999999999999997653
Q ss_pred --HHhhccccccccc----cccchHHH---------------------HHHHcCCccccc---cccchhhHHhHHHHHHH
Q 040956 850 --ILAQLGCFVPCEM----CVLSLADT---------------------IFTRLGATDRIM---TGESTFLVECTETASVL 899 (1085)
Q Consensus 850 --ilaqiG~~VPa~~----a~i~~~d~---------------------I~trig~~D~i~---~~~Stf~~Em~ela~iL 899 (1085)
+..++| |||+.. ...++.+. ++..+|..+... ..+|..+.....+|++|
T Consensus 75 ~~~~~~i~-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 75 KWVRSKVG-LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHHHhhEE-EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 112345 777653 11122222 333445433333 33444444444577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|+++|||||++|+|+..... ...++..+.++ |+|+|++||+++.+..++++..+.
T Consensus 154 --~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l 211 (274)
T PRK13647 154 --AMDPDVIVLDEPMAYLDPRGQET-LMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVL 211 (274)
T ss_pred --HcCCCEEEEECCCcCCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 89999999999999999777554 45566666665 899999999999998888765443
No 88
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.1e-15 Score=171.43 Aligned_cols=162 Identities=19% Similarity=0.146 Sum_probs=112.8
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|+++++.+.|-........+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~----~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIE----DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccH
Confidence 77888888772111012469999999998 79999999999999999999997653
Q ss_pred --HHhhccccccccc----cccchHH---------------------HHHHHcCCc--cccc---cccchhhHHhHHHHH
Q 040956 850 --ILAQLGCFVPCEM----CVLSLAD---------------------TIFTRLGAT--DRIM---TGESTFLVECTETAS 897 (1085)
Q Consensus 850 --ilaqiG~~VPa~~----a~i~~~d---------------------~I~trig~~--D~i~---~~~Stf~~Em~ela~ 897 (1085)
+..++| |||+.. ...++.+ .++..+|.. +... ..+|..+.....+|+
T Consensus 79 ~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 79 SDIRKKVG-LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HHHhhceE-EEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 112355 787753 1123322 234455654 2222 334444444555777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+| +.+|+++|||||++|+|+..... ...++..+.++.+.|+|++||+++++..++++..+
T Consensus 158 aL--~~~P~llllDEPt~gLD~~~~~~-l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~ 217 (287)
T PRK13637 158 VV--AMEPKILILDEPTAGLDPKGRDE-ILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIV 217 (287)
T ss_pred HH--HcCCCEEEEECCccCCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 77 89999999999999999766544 45566666654588999999999998888876443
No 89
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.7e-16 Score=171.75 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=107.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+...| ++..++++++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 2 l~~~~l~~~~-----~~~~il~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRY-----QDEPVLKGLNLDFS----LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEc-----CCcccccceEEEEc----CCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCH
Confidence 6788888877 34679999999998 799999999999999999999976431
Q ss_pred ---Hhhcccccccccc----ccchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMC----VLSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~a----~i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
..++| |||+... ..++.+ .++..+|..+.... .+|..+.....++++|
T Consensus 73 ~~~~~~i~-~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 73 LALRQQVA-TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHHHhheE-EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 11244 6776531 111111 12333444332222 3344444444566666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+.+|+++|||||++|+|+..... ...++..+.++ +.++|++||+.+++..++++..+
T Consensus 152 --~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~ 208 (271)
T PRK13638 152 --VLQARYLLLDEPTAGLDPAGRTQ-MIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYV 208 (271)
T ss_pred --HcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 89999999999999999776544 44566666654 78999999999999888876443
No 90
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.65 E-value=8.5e-16 Score=178.13 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=115.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++++++.| ++..+.++++|++. +|++++|+||||||||||||+|+++.-.
T Consensus 13 ~~L~l~~l~~~~-----~~~~~l~~vsl~i~----~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSF-----DGKEVISNLDLTIN----NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEE-----CCeEEEeeeEEEEe----CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 679999999988 34578999999997 7899999999999999999999875411
Q ss_pred --hhccccccccccc---cchHHH---------------------HHHHcCCccccccc---cchhhHHhHHHHHHHHhC
Q 040956 852 --AQLGCFVPCEMCV---LSLADT---------------------IFTRLGATDRIMTG---ESTFLVECTETASVLQKA 902 (1085)
Q Consensus 852 --aqiG~~VPa~~a~---i~~~d~---------------------I~trig~~D~i~~~---~Stf~~Em~ela~iL~~a 902 (1085)
..+| ||++..+- +++.+. ++..+|..+..... +|..+.....+|++| +
T Consensus 84 ~~r~ig-~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL--~ 160 (375)
T PRK09452 84 ENRHVN-TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV--V 160 (375)
T ss_pred HHCCEE-EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH--h
Confidence 1244 66665432 233333 33444544333333 343333344466667 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.+|+++|||||++|+|...... ....+..+.++.+.++|++||+.+++..++++..+..
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~-l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~ 219 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQ-MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR 219 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999776554 4455666666568999999999999988888765543
No 91
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.65 E-value=6.2e-16 Score=178.53 Aligned_cols=160 Identities=20% Similarity=0.184 Sum_probs=115.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
.|+++++.+.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-.
T Consensus 5 ~l~~~~l~~~~-----~~~~~l~~vsl~i~----~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAY-----GANTVLDDLSLEIE----AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEE-----CCeEEEeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC
Confidence 48999999988 34579999999997 7899999999999999999999875321
Q ss_pred ---hhcccccccccccc---chH---------------------HHHHHHcCCcccc---ccccchhhHHhHHHHHHHHh
Q 040956 852 ---AQLGCFVPCEMCVL---SLA---------------------DTIFTRLGATDRI---MTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 852 ---aqiG~~VPa~~a~i---~~~---------------------d~I~trig~~D~i---~~~~Stf~~Em~ela~iL~~ 901 (1085)
..+| ||++....+ ++. +.++..+|..+.. ...+|..+.....+|++|
T Consensus 76 ~~~r~ig-~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL-- 152 (362)
T TIGR03258 76 PHKRGLA-LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAI-- 152 (362)
T ss_pred HHHCCEE-EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHH--
Confidence 1233 555543221 222 2344555554333 334455544455577777
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhc-CceEEEEEechhHHHhhcCccceee
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI-NCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~-~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+.+|+|+|||||++|+|+.....+ ...+..+.++. |.|+|++||+.+++..++++..+..
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l-~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~ 213 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANM-REEIAALHEELPELTILCVTHDQDDALTLADKAGIMK 213 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHH-HHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999998776554 44555666655 7899999999999988888765553
No 92
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.65 E-value=1.1e-15 Score=168.99 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=111.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++|+...| ++..++++++|.+. +|++++|+||||+|||||||+|+++.-.
T Consensus 3 ~~l~~~nl~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 3 TIIRVEKLAKTF-----NQHQALHAVDLNIH----HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQR 73 (262)
T ss_pred cEEEEeeEEEEe-----CCeEEEecceEEEc----CCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccc
Confidence 578999999887 35679999999997 7999999999999999999999875421
Q ss_pred ------------hhcccccccccc---ccchHHH-----------------------------HHHHcCCccccc---cc
Q 040956 852 ------------AQLGCFVPCEMC---VLSLADT-----------------------------IFTRLGATDRIM---TG 884 (1085)
Q Consensus 852 ------------aqiG~~VPa~~a---~i~~~d~-----------------------------I~trig~~D~i~---~~ 884 (1085)
..+| |+|+... .+++.+. ++.++|..+... ..
T Consensus 74 ~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (262)
T PRK09984 74 EGRLARDIRKSRANTG-YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152 (262)
T ss_pred ccccchhHHHHHhheE-EEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 0123 6665421 1122222 334455443222 33
Q ss_pred cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 885 ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 885 ~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+|..+.....++++| +.+|+|+|||||++|.|...... ...++..+.++.|.++|++||+.+++..++++..
T Consensus 153 LS~G~~qrv~laral--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 153 LSGGQQQRVAIARAL--MQQAKVILADEPIASLDPESARI-VMDTLRDINQNDGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred cCHHHHHHHHHHHHH--hcCCCEEEecCccccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 444444455577777 89999999999999999776544 4556666665447899999999999888887543
No 93
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.65 E-value=1.3e-15 Score=161.25 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=109.1
Q ss_pred CEEEEEcceeeeeecC-CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--H---------------
Q 040956 789 PVLKIKGLWHPFALGE-NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--I--------------- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~-~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--i--------------- 850 (1085)
+.|+++++...|-... .....+.++++|.+. +|++++|+||||+|||||||+++++. -
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~----~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~ 77 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAK----PGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK 77 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch
Confidence 4588999988872100 002579999999998 79999999999999999999998864 1
Q ss_pred ---Hhhcccccccccc---ccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 040956 851 ---LAQLGCFVPCEMC---VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYA 924 (1085)
Q Consensus 851 ---laqiG~~VPa~~a---~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~a 924 (1085)
...+| |+|+... .+++.+.+..... ...+|..+.....++++| +.+|+++|||||++|+|.....
T Consensus 78 ~~~~~~i~-~~~q~~~~~~~~t~~~~i~~~~~-----~~~LS~G~~qrv~laral--~~~p~illlDEP~~~LD~~~~~- 148 (194)
T cd03213 78 RSFRKIIG-YVPQDDILHPTLTVRETLMFAAK-----LRGLSGGERKRVSIALEL--VSNPSLLFLDEPTSGLDSSSAL- 148 (194)
T ss_pred HhhhheEE-EccCcccCCCCCcHHHHHHHHHH-----hccCCHHHHHHHHHHHHH--HcCCCEEEEeCCCcCCCHHHHH-
Confidence 11233 5555422 2344444321100 015677666666788888 8999999999999999976654
Q ss_pred HHHHHHHHHHHhcCceEEEEEechh-HHHhhcCcc
Q 040956 925 IAYAVFRQLVERINCRLLFATHYHP-LTKEFASHP 958 (1085)
Q Consensus 925 ia~avle~L~~~~~~tiL~aTH~~e-l~~~~~~~~ 958 (1085)
....++..+.++ +.++|++||+++ .+..++++.
T Consensus 149 ~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v 182 (194)
T cd03213 149 QVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKL 182 (194)
T ss_pred HHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEE
Confidence 455566666654 889999999986 566666654
No 94
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.65 E-value=9.1e-16 Score=176.77 Aligned_cols=160 Identities=23% Similarity=0.214 Sum_probs=114.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|++++++..| ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 2 ~L~i~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSF-----GRTQVLNDISLDIP----SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEe-----CCeEEEEEeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 37889998887 34579999999997 799999999999999999999987531
Q ss_pred Hhhcccccccccccc---chH-------------------------HHHHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 851 LAQLGCFVPCEMCVL---SLA-------------------------DTIFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 851 laqiG~~VPa~~a~i---~~~-------------------------d~I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
...+| |||++..-+ ++. +.++..++..+.... .+|..+.....+|++|
T Consensus 73 ~r~i~-~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 73 DRKVG-FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HCCEE-EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 01244 666543211 122 224445555433333 3444444444577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+.+|+++|||||++|+|......+. .++..+.++.+.|+|++||+++.+..++++..+..
T Consensus 152 --~~~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~ 211 (353)
T PRK10851 152 --AVEPQILLLDEPFGALDAQVRKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS 211 (353)
T ss_pred --hcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 8999999999999999987765544 45666666568999999999999999998765554
No 95
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.65 E-value=1.1e-15 Score=158.93 Aligned_cols=142 Identities=17% Similarity=0.173 Sum_probs=96.7
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc---------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--------------- 856 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--------------- 856 (1085)
+++++...|- .+...+.+|++|.+. +|++++|+||||+|||||||+++++.- ..-|.
T Consensus 2 ~~~~l~~~~~---~~~~~~l~~~~~~i~----~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 2 EVENVSFRYP---GAEPPVLRNVSFSIE----PGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNE 73 (173)
T ss_pred EEEEEEEEcC---CCCCcceeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHH
Confidence 4666666551 012468999999987 789999999999999999999988532 12221
Q ss_pred ------cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 040956 857 ------FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930 (1085)
Q Consensus 857 ------~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avl 930 (1085)
|++++...+ . ....+++ +|..+.....++++| +.+|+++|||||++|.|+.....+ ..++
T Consensus 74 ~~~~i~~~~q~~~~~-------~-~tv~~~l---LS~G~~qrv~la~al--~~~p~~lllDEPt~~LD~~~~~~l-~~~l 139 (173)
T cd03246 74 LGDHVGYLPQDDELF-------S-GSIAENI---LSGGQRQRLGLARAL--YGNPRILVLDEPNSHLDVEGERAL-NQAI 139 (173)
T ss_pred HHhheEEECCCCccc-------c-CcHHHHC---cCHHHHHHHHHHHHH--hcCCCEEEEECCccccCHHHHHHH-HHHH
Confidence 233221100 0 0111222 565555555677777 899999999999999997775554 4455
Q ss_pred HHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 931 RQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 931 e~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
..+.++ +.++|++||+.+++. .+++
T Consensus 140 ~~~~~~-~~tii~~sh~~~~~~-~~d~ 164 (173)
T cd03246 140 AALKAA-GATRIVIAHRPETLA-SADR 164 (173)
T ss_pred HHHHhC-CCEEEEEeCCHHHHH-hCCE
Confidence 666554 889999999998875 4554
No 96
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.3e-15 Score=167.66 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=109.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++|+...| ++..++++++|++. +|++++|+||||+|||||||+++++.-.
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 4 PLLSVSGLMMRF-----GGLLAVNNVNLEVR----EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred ceEEEeeEEEEE-----CCEEEEEeeeeEEc----CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH
Confidence 479999999877 34679999999998 7999999999999999999999875310
Q ss_pred ---hhcc-cccccccc---ccchHHH------------------------------------HHHHcCCccccccc---c
Q 040956 852 ---AQLG-CFVPCEMC---VLSLADT------------------------------------IFTRLGATDRIMTG---E 885 (1085)
Q Consensus 852 ---aqiG-~~VPa~~a---~i~~~d~------------------------------------I~trig~~D~i~~~---~ 885 (1085)
...+ .|+|+... .+++.+. ++..+|..+..... +
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 1111 14555421 1222222 22334443322233 3
Q ss_pred chhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|..+.....++++| +.+|+++|||||++|.|+..... .+.++..+.++.++++|++||+.+++..++++.
T Consensus 155 S~G~~qrv~la~al--~~~p~llllDEPt~~LD~~~~~~-l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i 224 (255)
T PRK11300 155 AYGQQRRLEIARCM--VTQPEILMLDEPAAGLNPKETKE-LDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224 (255)
T ss_pred CHHHHHHHHHHHHH--hcCCCEEEEcCCccCCCHHHHHH-HHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence 44444444466666 89999999999999999776544 455666666544789999999999998877754
No 97
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=166.74 Aligned_cols=155 Identities=22% Similarity=0.220 Sum_probs=108.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++++.+.| ++..+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~~sl~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAY-----KGRRVVEDVSLTVN----SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEe-----CCEEEEeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 58899998887 34679999999998 799999999999999999999977531
Q ss_pred ---Hhhcccccccccc---ccchHHH----------------------HHHHcCCccccc---cccchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMC---VLSLADT----------------------IFTRLGATDRIM---TGESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~a---~i~~~d~----------------------I~trig~~D~i~---~~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+... ..++.+. ++..+|..+... ..+|..+.....++++|
T Consensus 74 ~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 74 ARARRGIG-YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred HHHHhCeE-EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 11244 6666431 1223332 333344333222 23444444444566666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|.|+..... .+.++..+.++ +.++|++||+.+.+..++++.
T Consensus 153 --~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tiii~sH~~~~~~~~~d~v 207 (241)
T PRK10895 153 --AANPKFILLDEPFAGVDPISVID-IKRIIEHLRDS-GLGVLITDHNVRETLAVCERA 207 (241)
T ss_pred --hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEE
Confidence 89999999999999999766544 44566666654 889999999998888777654
No 98
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.3e-15 Score=170.03 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=112.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
++.++|+.+.|- +...+++|++|++. +|++++|+||||+|||||||+|+++.
T Consensus 3 ~l~~~~l~~~~~----~~~~~l~~vsl~i~----~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYS----GSKEALNNINFIAP----RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeC----CCCceeeEeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 588999998882 23469999999998 79999999999999999999997653
Q ss_pred -HHhhccccccccc----cccchHHH---------------------HHHHcCCcccc---ccccchhhHHhHHHHHHHH
Q 040956 850 -ILAQLGCFVPCEM----CVLSLADT---------------------IFTRLGATDRI---MTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 850 -ilaqiG~~VPa~~----a~i~~~d~---------------------I~trig~~D~i---~~~~Stf~~Em~ela~iL~ 900 (1085)
+..++| |+|+.. ...++.+. ++.++|..+.. ...+|..+.....++++|
T Consensus 75 ~~~~~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL- 152 (277)
T PRK13652 75 EVRKFVG-LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVI- 152 (277)
T ss_pred HHHhheE-EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH-
Confidence 112344 676653 11233332 33344543322 334555555555577777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+.+|+++|||||++|.|+..... ...++..+.++.+.|+|++||+.+++..++++..+
T Consensus 153 -~~~p~llilDEPt~gLD~~~~~~-l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~ 210 (277)
T PRK13652 153 -AMEPQVLVLDEPTAGLDPQGVKE-LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYV 210 (277)
T ss_pred -HcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 89999999999999999766544 44566666654478999999999999888876543
No 99
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.64 E-value=9.5e-16 Score=175.72 Aligned_cols=162 Identities=18% Similarity=0.232 Sum_probs=115.0
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+.+-|-.. .+...+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~----~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVP----AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 6788888877211 012479999999998 799999999999999999999976431
Q ss_pred ----Hhhccccccccccc---cchHH---------------------HHHHHcCCccccccccchhhH---HhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRIMTGESTFLV---ECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i~~~~Stf~~---Em~ela~iL 899 (1085)
...+| |+|+.... .++.+ .++.++|..+......+.++. ....+|++|
T Consensus 77 l~~~r~~Ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL 155 (343)
T TIGR02314 77 LTKARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARAL 155 (343)
T ss_pred HHHHhcCEE-EEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 12355 67765321 12222 245556665544444444444 444577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+++|+++|+|||++|+|+..... ...++..+.++.+.|+|++||+++.+..++++..+.
T Consensus 156 --~~~P~iLLlDEPts~LD~~t~~~-i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 156 --ASNPKVLLCDEATSALDPATTQS-ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred --HhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 89999999999999999877554 445667776656899999999999999888865443
No 100
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.64 E-value=9.5e-16 Score=166.11 Aligned_cols=155 Identities=20% Similarity=0.191 Sum_probs=104.6
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++++...| ++..+.+|++|++. +|++++|+||||||||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 2 EVSNLNVYY-----GQSHILRGVSLEVP----KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHER 72 (230)
T ss_pred EEEeEEEEe-----CCeEEecceeeEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 567777766 34579999999998 799999999999999999999976531
Q ss_pred -Hhhccccccccccc---cchHHH------------------HHHHcC-Ccccc---ccccchhhHHhHHHHHHHHhCCC
Q 040956 851 -LAQLGCFVPCEMCV---LSLADT------------------IFTRLG-ATDRI---MTGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 851 -laqiG~~VPa~~a~---i~~~d~------------------I~trig-~~D~i---~~~~Stf~~Em~ela~iL~~at~ 904 (1085)
..++| |+|++... .++.+. +...++ ..+.. ...+|..+.....++++| +.+
T Consensus 73 ~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~ 149 (230)
T TIGR03410 73 ARAGIA-YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL--VTR 149 (230)
T ss_pred HHhCeE-EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH--hcC
Confidence 11244 67765321 122222 222222 11111 222344444344466666 899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
|+++|||||++|+|+..... ...++..+.++.++|+|++||+.+++..++++..
T Consensus 150 p~illlDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 203 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKD-IGRVIRRLRAEGGMAILLVEQYLDFARELADRYY 203 (230)
T ss_pred CCEEEecCCcccCCHHHHHH-HHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999776554 4455556655447899999999999888777543
No 101
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.6e-15 Score=165.77 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=109.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+.+.| ++..+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 3 EIEFKEVSYSS-----FGKEILKDISVKFE----GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChH
Confidence 47888988777 34579999999997 799999999999999999999977531
Q ss_pred --Hhhcccccccccccc--ch-----------------HHHHHHHcCCc-cccc---cccchhhHHhHHHHHHHHhCCCC
Q 040956 851 --LAQLGCFVPCEMCVL--SL-----------------ADTIFTRLGAT-DRIM---TGESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 851 --laqiG~~VPa~~a~i--~~-----------------~d~I~trig~~-D~i~---~~~Stf~~Em~ela~iL~~at~~ 905 (1085)
...+| |+|++...+ ++ +..++.++|.. +... ..+|..+.....+++++ +.+|
T Consensus 74 ~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al--~~~p 150 (241)
T PRK14250 74 DLRRKIG-MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL--ANNP 150 (241)
T ss_pred HhhhcEE-EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH--hcCC
Confidence 11233 566542111 11 12344555654 2222 23454444445567777 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+++|||||++|.|..... ....++..+.++.|.++|++||+.+++..++++..
T Consensus 151 ~llllDEPt~~LD~~~~~-~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~ 203 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTE-IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTA 203 (241)
T ss_pred CEEEEeCCcccCCHHHHH-HHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEE
Confidence 999999999999976544 44456666665448899999999999888887643
No 102
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.64 E-value=8.5e-16 Score=173.54 Aligned_cols=159 Identities=21% Similarity=0.184 Sum_probs=116.1
Q ss_pred EEEEEcceeeeeecCCCCcc-cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 790 VLKIKGLWHPFALGENGGLP-VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~-V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
.|+++|+.+-| +.. +.++++|.+. .|++++|+||||||||||||+||++.-.
T Consensus 3 ~i~l~~v~K~y------g~~~~l~~i~l~i~----~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF------GSFEVLKDVNLDIE----DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc------CCceeeecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence 58999999999 344 9999999998 7999999999999999999999987521
Q ss_pred --hhccccccccccc---cchHHHH---------------------HHHcCCcccccc---ccchhhHHhHHHHHHHHhC
Q 040956 852 --AQLGCFVPCEMCV---LSLADTI---------------------FTRLGATDRIMT---GESTFLVECTETASVLQKA 902 (1085)
Q Consensus 852 --aqiG~~VPa~~a~---i~~~d~I---------------------~trig~~D~i~~---~~Stf~~Em~ela~iL~~a 902 (1085)
-.+| +|++.++- ++++++| ...+++.+-+.. .+|........++++| .
T Consensus 73 ~~R~ia-mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAl--V 149 (338)
T COG3839 73 EKRGIA-MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARAL--V 149 (338)
T ss_pred hHCCEE-EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHH--h
Confidence 1344 56665543 3344433 233444444433 3444444444577777 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.+|+++|||||.+.+|..-... ....+..|.++.+.|+|++|||...+..++++..|.+
T Consensus 150 r~P~v~L~DEPlSnLDa~lR~~-mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~ 208 (338)
T COG3839 150 RKPKVFLLDEPLSNLDAKLRVL-MRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN 208 (338)
T ss_pred cCCCEEEecCchhHhhHHHHHH-HHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe
Confidence 9999999999976666555444 3344555777789999999999999999999887776
No 103
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=7.6e-16 Score=167.72 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=107.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++++++.| +...+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 4 VMLSFDKVSAHY-----GKIQALHEVSLHIN----QGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT 74 (237)
T ss_pred cEEEEEeEEEee-----CCceeeeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH
Confidence 578999999887 34679999999998 799999999999999999999976431
Q ss_pred ----Hhhccccccccccc---cchHHHH-------------------HHHc-CCccccccc---cchhhHHhHHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMCV---LSLADTI-------------------FTRL-GATDRIMTG---ESTFLVECTETASVLQ 900 (1085)
Q Consensus 851 ----laqiG~~VPa~~a~---i~~~d~I-------------------~tri-g~~D~i~~~---~Stf~~Em~ela~iL~ 900 (1085)
..++| |+|+.... .++.+.+ ...+ +..+..... +|..+.....++++|
T Consensus 75 ~~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al- 152 (237)
T PRK11614 75 AKIMREAVA-IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL- 152 (237)
T ss_pred HHHHHhCEE-EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH-
Confidence 11244 66664321 2233332 1222 122111122 333333333466666
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.+|+++|||||++|.|+... .....++..+.++ +.++|++||+.+.+..++++..
T Consensus 153 -~~~p~illlDEPt~~LD~~~~-~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 208 (237)
T PRK11614 153 -MSQPRLLLLDEPSLGLAPIII-QQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGY 208 (237)
T ss_pred -HhCCCEEEEcCccccCCHHHH-HHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEE
Confidence 899999999999999996654 4455566667655 8899999999998888877543
No 104
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=168.67 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=110.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..|.++++...| ++..++++++|.+. +|++++|+||||+|||||||+|+++.-
T Consensus 6 ~~l~i~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 6 ARLRGEQLTLGY-----GKYTVAENLTVEIP----DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred cEEEEEEEEEEE-----CCEEEeeecceEEC----CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH
Confidence 579999999888 34679999999998 799999999999999999999977531
Q ss_pred ---Hhhccccccccccc---cchHH-------------------------HHHHHcCCcccccc---ccchhhHHhHHHH
Q 040956 851 ---LAQLGCFVPCEMCV---LSLAD-------------------------TIFTRLGATDRIMT---GESTFLVECTETA 896 (1085)
Q Consensus 851 ---laqiG~~VPa~~a~---i~~~d-------------------------~I~trig~~D~i~~---~~Stf~~Em~ela 896 (1085)
...+| |+|++... .++.+ .++..+|..+.... .+|..+.....++
T Consensus 77 ~~~~~~i~-~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 77 KEVARRIG-LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHHhhheE-EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 11234 66654211 12222 23344454332222 3444444444567
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+++ +.+|+++|||||+.|.|+..... ...++..+.++.+.++|++||+.+++..++++.
T Consensus 156 ral--~~~p~llllDEPt~gLD~~~~~~-l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i 214 (265)
T PRK10253 156 MVL--AQETAIMLLDEPTTWLDISHQID-LLELLSELNREKGYTLAAVLHDLNQACRYASHL 214 (265)
T ss_pred HHH--hcCCCEEEEeCccccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 777 89999999999999999776554 444555665544789999999999988888754
No 105
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.64 E-value=7.4e-16 Score=165.85 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=103.2
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++|+.+.| ++..+.++++|++. +|++++|+||||||||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 2 EVENLNAGY-----GKSQILFGVSLTVP----EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72 (222)
T ss_pred EEeeEEeec-----CCeeEeeeeeEEEc----CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHH
Confidence 567777766 34578999999998 799999999999999999999976531
Q ss_pred H-hhcccccccccc---ccchHHH-------------------HHHHc-CCcccccc---ccchhhHHhHHHHHHHHhCC
Q 040956 851 L-AQLGCFVPCEMC---VLSLADT-------------------IFTRL-GATDRIMT---GESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 851 l-aqiG~~VPa~~a---~i~~~d~-------------------I~tri-g~~D~i~~---~~Stf~~Em~ela~iL~~at 903 (1085)
. .++| |+|+... .+++.+. ++..+ +..+.... .+|..+.....++++| +.
T Consensus 73 ~~~~i~-~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~ 149 (222)
T cd03224 73 ARAGIG-YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARAL--MS 149 (222)
T ss_pred HhcCeE-EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHH--hc
Confidence 1 1244 6666532 1122222 22223 12222222 2344444444466666 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+|+++|||||++|.|...... ...++..+.+ .++++|++||+.+.+..++++.
T Consensus 150 ~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i 202 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEE-IFEAIRELRD-EGVTILLVEQNARFALEIADRA 202 (222)
T ss_pred CCCEEEECCCcccCCHHHHHH-HHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEE
Confidence 999999999999999766544 4456666655 3889999999999988877754
No 106
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.64 E-value=1.5e-15 Score=155.84 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=113.3
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|.+++....|. ++..+++|++|.+. +|+++.||||+|||||||||+|....
T Consensus 2 I~f~~V~k~Y~----~g~~aL~~vs~~i~----~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYP----GGREALRDVSFHIP----KGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcC----CCchhhhCceEeec----CceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccc
Confidence 67778777773 34679999999998 89999999999999999999996643
Q ss_pred ---HHhhcccccccccc---ccchHHH---------------------HHHHcCCccccccccchhhHH---hHHHHHHH
Q 040956 850 ---ILAQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRIMTGESTFLVE---CTETASVL 899 (1085)
Q Consensus 850 ---ilaqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i~~~~Stf~~E---m~ela~iL 899 (1085)
+--||| .|.++.- ..+++|+ .+..+|..+....-.+..+++ ...+|+++
T Consensus 74 iP~LRR~IG-vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAi 152 (223)
T COG2884 74 IPFLRRQIG-VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAI 152 (223)
T ss_pred cchhhheee-eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHH
Confidence 234677 5666542 2233332 456677766665555555543 33466767
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
..+|.|+|.|||+..+|+.-...|.. +++.+.. .|.|+|++|||.++++.+..+
T Consensus 153 --V~~P~vLlADEPTGNLDp~~s~~im~-lfeeinr-~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 153 --VNQPAVLLADEPTGNLDPDLSWEIMR-LFEEINR-LGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred --ccCCCeEeecCCCCCCChHHHHHHHH-HHHHHhh-cCcEEEEEeccHHHHHhccCc
Confidence 89999999999999999877555443 5566554 599999999999999987654
No 107
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.64 E-value=8.3e-16 Score=165.33 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=104.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...|- .+...++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 1 l~~~~l~~~~~---~~~~~il~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYK---KGTKPAVDDLSLNVY----KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeC---CCCceeecceEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHH
Confidence 35677777661 011579999999998 799999999999999999999977531
Q ss_pred Hhhcccccccccc---ccchH---------------------HHHHHHcCCccccccc---cchhhHHhHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMC---VLSLA---------------------DTIFTRLGATDRIMTG---ESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a---~i~~~---------------------d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at 903 (1085)
..++| |+|+... ..++. +.++..++..+..... +|..+.....++++| +.
T Consensus 74 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~ 150 (220)
T cd03263 74 RQSLG-YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIAL--IG 150 (220)
T ss_pred hhhEE-EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHH--hc
Confidence 11234 6665421 11222 2234445554333333 333333334466666 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+|+++|||||+.|.|+..... ...++..+.+ ++++|++||+++++..++++..
T Consensus 151 ~p~llllDEP~~~LD~~~~~~-l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~ 203 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRA-IWDLILEVRK--GRSIILTTHSMDEAEALCDRIA 203 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHH-HHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEE
Confidence 999999999999999766544 4445555543 5899999999999988776543
No 108
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.64 E-value=1.9e-15 Score=163.29 Aligned_cols=159 Identities=23% Similarity=0.245 Sum_probs=105.6
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...|-.. .....++++++|.+. +|++++|+||||+||||||++++++.-
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTG-GGSVKALDDVSFSIK----KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCC-CcceeeecCceeEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhh
Confidence 6778888777210 001269999999998 799999999999999999999976531
Q ss_pred ----Hhhcccccccccc-----ccchHHH-----------------------HHHHcCCc-cccc---cccchhhHHhHH
Q 040956 851 ----LAQLGCFVPCEMC-----VLSLADT-----------------------IFTRLGAT-DRIM---TGESTFLVECTE 894 (1085)
Q Consensus 851 ----laqiG~~VPa~~a-----~i~~~d~-----------------------I~trig~~-D~i~---~~~Stf~~Em~e 894 (1085)
..++| |+|+... ..++.+. ++..++.. +... ..+|..+.....
T Consensus 77 ~~~~~~~i~-~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 77 RKIRRKEIQ-MVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred HHHhhccEE-EEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHH
Confidence 11344 6665531 1222222 22334442 1122 234444444444
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++++| +.+|+++|||||++|.|+..... ...++..+.++.+.++|++||+.+.+..++++.
T Consensus 156 laral--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 216 (228)
T cd03257 156 IARAL--ALNPKLLIADEPTSALDVSVQAQ-ILDLLKKLQEELGLTLLFITHDLGVVAKIADRV 216 (228)
T ss_pred HHHHH--hcCCCEEEecCCCCCCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE
Confidence 66666 89999999999999999766544 445555565544789999999999988777654
No 109
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.64 E-value=1.4e-15 Score=165.86 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=108.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...| ++..+.+|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHF-----GPTQVLHNIDLNID----QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEE-----CCeEEeeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhH
Confidence 5778887776 34579999999997 799999999999999999999976531
Q ss_pred ---Hhhcccccccccc---ccchHH----------------------HHHHHcCCccccccc---cchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMC---VLSLAD----------------------TIFTRLGATDRIMTG---ESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~a---~i~~~d----------------------~I~trig~~D~i~~~---~Stf~~Em~ela~iL 899 (1085)
..++| |+|+... ..++.+ .++.++|..+..... +|..+.....+++++
T Consensus 73 ~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 73 RLIRQEAG-MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHHhhceE-EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 01233 5665421 112222 234445544333333 444444444567777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+.+|+++|||||++|.|......+ ..++..+.++ +.++|++||+.+++..++++..+
T Consensus 152 --~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~ 208 (240)
T PRK09493 152 --AVKPKLMLFDEPTSALDPELRHEV-LKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIF 208 (240)
T ss_pred --hcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 899999999999999997765544 4466666654 78999999999999888776433
No 110
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.64 E-value=1.5e-15 Score=164.37 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=107.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|++++++..|-... ....++++++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~----~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-HELSILTGVELVVK----RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDE 79 (228)
T ss_pred ceEEEeeeEEEccCCC-cceEEEeccEEEEc----CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCH
Confidence 5789999988772100 00258999999998 799999999999999999999987531
Q ss_pred ------H-hhcccccccccc---ccchHHH---------------------HHHHcCCcccccc---ccchhhHHhHHHH
Q 040956 851 ------L-AQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRIMT---GESTFLVECTETA 896 (1085)
Q Consensus 851 ------l-aqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i~~---~~Stf~~Em~ela 896 (1085)
. ..+| |+|+... ..++.|. ++..+|..+.... .+|..+.....++
T Consensus 80 ~~~~~~~~~~i~-~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 80 EARAKLRAKHVG-FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHHHHHhheEE-EEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 0 1244 6665432 1223332 2334444333322 3444444444566
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
++| +.+|+++|||||++|.|+.... ....++..+.++.+.++|++||+.+++.. +++
T Consensus 159 ~al--~~~p~llllDEPt~~LD~~~~~-~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~ 215 (228)
T PRK10584 159 RAF--NGRPDVLFADEPTGNLDRQTGD-KIADLLFSLNREHGTTLILVTHDLQLAAR-CDR 215 (228)
T ss_pred HHH--hcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCE
Confidence 666 8999999999999999976644 44556666655447899999999998754 554
No 111
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.5e-15 Score=160.47 Aligned_cols=155 Identities=20% Similarity=0.172 Sum_probs=107.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..|+++++...|-.. ..+..+.+|++|.+. +|++++|+||||+|||||||++++...
T Consensus 2 ~~l~~~~l~~~~~~~-~~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~ 76 (192)
T cd03232 2 SVLTWKNLNYTVPVK-GGKRQLLNNISGYVK----PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN 76 (192)
T ss_pred cEEEEeeeEEEecCC-CCceEeEEccEEEEe----CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHH
Confidence 468899998887210 012569999999987 799999999999999999999987531
Q ss_pred -Hhhcccccccccc---ccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 040956 851 -LAQLGCFVPCEMC---VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926 (1085)
Q Consensus 851 -laqiG~~VPa~~a---~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia 926 (1085)
...+| |+|+... ..++.+.+.... ....+|..+.....+++++ +.+|+++|+|||++|.|...... .
T Consensus 77 ~~~~i~-~~~q~~~~~~~~tv~~~l~~~~-----~~~~LSgGe~qrv~la~al--~~~p~vlllDEP~~~LD~~~~~~-l 147 (192)
T cd03232 77 FQRSTG-YVEQQDVHSPNLTVREALRFSA-----LLRGLSVEQRKRLTIGVEL--AAKPSILFLDEPTSGLDSQAAYN-I 147 (192)
T ss_pred hhhceE-EecccCccccCCcHHHHHHHHH-----HHhcCCHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCCHHHHHH-H
Confidence 11233 5554321 233444432100 0015666666666677777 89999999999999999666544 4
Q ss_pred HHHHHHHHHhcCceEEEEEechhH-HHhhcCcc
Q 040956 927 YAVFRQLVERINCRLLFATHYHPL-TKEFASHP 958 (1085)
Q Consensus 927 ~avle~L~~~~~~tiL~aTH~~el-~~~~~~~~ 958 (1085)
+.++..+.+. ++++|++||+.+. +..++++.
T Consensus 148 ~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i 179 (192)
T cd03232 148 VRFLKKLADS-GQAILCTIHQPSASIFEKFDRL 179 (192)
T ss_pred HHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEE
Confidence 5566666654 8899999999984 55566543
No 112
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.4e-15 Score=166.16 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=105.6
Q ss_pred EEEcceeeeeecCCCC-cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 792 KIKGLWHPFALGENGG-LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~-~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
++++++..| ++ ..++++++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~~l~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 2 EFENVTKRY-----GGGKKAVNNLNLEIA----KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred EEEEEEEEe-----CCcceEeeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHH
Confidence 566777666 23 568999999998 799999999999999999999976531
Q ss_pred -Hhhcccccccccc---ccchHH---------------------HHHHHcCCcc--cccc---ccchhhHHhHHHHHHHH
Q 040956 851 -LAQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATD--RIMT---GESTFLVECTETASVLQ 900 (1085)
Q Consensus 851 -laqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D--~i~~---~~Stf~~Em~ela~iL~ 900 (1085)
...+| |+|+... ..++.+ .++.++|... .... .+|..+.....++++|
T Consensus 73 ~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral- 150 (242)
T cd03295 73 LRRKIG-YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL- 150 (242)
T ss_pred hhcceE-EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH-
Confidence 11233 6666431 122222 2344555542 2222 3344333344466666
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.+|+++|||||++|.|+.... ....++..+.++.++++|++||+.+.+..++++..
T Consensus 151 -~~~p~llllDEPt~~LD~~~~~-~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~ 207 (242)
T cd03295 151 -AADPPLLLMDEPFGALDPITRD-QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIA 207 (242)
T ss_pred -hcCCCEEEecCCcccCCHHHHH-HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE
Confidence 8999999999999999976544 44556666655447899999999998888777543
No 113
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.2e-15 Score=158.33 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=95.8
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc---------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--------------- 856 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--------------- 856 (1085)
++++++..|-. ....+.++++|.+. +|++++|+||||+|||||||+++++.- ..-|.
T Consensus 2 ~~~~l~~~~~~---~~~~~l~~i~~~i~----~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 2 EFKNVSFSYPG---RPKPVLKDVSLTIK----PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred EEEEEEEEcCC---CCcccccceEEEEc----CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHH
Confidence 46666665510 11278999999997 799999999999999999999988532 12221
Q ss_pred ------cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 040956 857 ------FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930 (1085)
Q Consensus 857 ------~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avl 930 (1085)
|+|+... ++. ....|++ +|..+.....+++++ +.+|+++|||||++|+|...... ...++
T Consensus 74 ~~~~i~~~~~~~~-------~~~-~t~~e~l---LS~G~~~rl~la~al--~~~p~llllDEP~~gLD~~~~~~-l~~~l 139 (171)
T cd03228 74 LRKNIAYVPQDPF-------LFS-GTIRENI---LSGGQRQRIAIARAL--LRDPPILILDEATSALDPETEAL-ILEAL 139 (171)
T ss_pred HHhhEEEEcCCch-------hcc-chHHHHh---hCHHHHHHHHHHHHH--hcCCCEEEEECCCcCCCHHHHHH-HHHHH
Confidence 2222211 111 1112222 666655566677777 89999999999999999776544 44455
Q ss_pred HHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 931 RQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 931 e~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
..+. + ++++|++||+++++.. +++
T Consensus 140 ~~~~-~-~~tii~~sh~~~~~~~-~d~ 163 (171)
T cd03228 140 RALA-K-GKTVIVIAHRLSTIRD-ADR 163 (171)
T ss_pred HHhc-C-CCEEEEEecCHHHHHh-CCE
Confidence 5553 3 6899999999999876 554
No 114
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.2e-15 Score=162.70 Aligned_cols=154 Identities=22% Similarity=0.226 Sum_probs=105.1
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------ 849 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------ 849 (1085)
.+.|+++|+.--+ +++.|+.|+++.++ +|+.++|+|||||||||||+++++-.
T Consensus 29 ~~li~l~~v~v~r-----~gk~iL~~isW~V~----~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 29 EPLIELKNVSVRR-----NGKKILGDLSWQVN----PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred cceEEecceEEEE-----CCEeeccccceeec----CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCc
Confidence 3689999998777 67899999999998 78999999999999999999995321
Q ss_pred ----HHhhcccccccc-------------------ccccc------------hHHHHHHHcCCccccc---cccchhhHH
Q 040956 850 ----ILAQLGCFVPCE-------------------MCVLS------------LADTIFTRLGATDRIM---TGESTFLVE 891 (1085)
Q Consensus 850 ----ilaqiG~~VPa~-------------------~a~i~------------~~d~I~trig~~D~i~---~~~Stf~~E 891 (1085)
+-..|| +|..+ .+.++ ....+...+|+..-.. ..+|.....
T Consensus 100 ~~~elrk~IG-~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 100 TIFELRKRIG-LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred chHHHHHHhC-ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 223344 22110 11122 1223566666554333 344444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh-cCceEEEEEechhHHHhh
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~-~~~tiL~aTH~~el~~~~ 954 (1085)
..=+|++| ++.|.|+|||||+.|.|..-... ....+..++.. .+.++|||||+.+.+--+
T Consensus 179 rvLiaRAL--v~~P~LLiLDEP~~GLDl~~re~-ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~ 239 (257)
T COG1119 179 RVLIARAL--VKDPELLILDEPAQGLDLIAREQ-LLNRLEELAASPGAPALLFVTHHAEEIPPC 239 (257)
T ss_pred HHHHHHHH--hcCCCEEEecCccccCChHHHHH-HHHHHHHHhcCCCCceEEEEEcchhhcccc
Confidence 44477777 89999999999999999766444 33344444443 356899999998886543
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.64 E-value=1.4e-15 Score=163.70 Aligned_cols=154 Identities=23% Similarity=0.212 Sum_probs=103.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...|-.. .+...+.++++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~isl~i~----~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEG-KLDTRVLKGVSLSIG----KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCC-CcceEeEeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhH
Confidence 5677777766210 011469999999998 799999999999999999999976520
Q ss_pred ----H-hhcccccccccc---ccchHH---------------------HHHHHcCCccccccc---cchhhHHhHHHHHH
Q 040956 851 ----L-AQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMTG---ESTFLVECTETASV 898 (1085)
Q Consensus 851 ----l-aqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~~---~Stf~~Em~ela~i 898 (1085)
. ..+| |+|+... ..++.+ .++..+|..+..... +|..+.....++++
T Consensus 77 ~~~~~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 77 RAKLRNKKLG-FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHHHHHhcEE-EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 0 1244 6766531 122222 234445554333333 44444444456666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
| +.+|+++|||||++|.|+..... ...++..+.++.+.++|++||+.+++..
T Consensus 156 l--~~~p~illlDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 156 L--VNQPSLVLADEPTGNLDNNNAKI-IFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred H--hCCCCEEEEeCCCCcCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 6 89999999999999999776544 4456666655447899999999988764
No 116
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.1e-15 Score=170.69 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=111.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+++.|-........+++|++|.+. +|++++|+||||||||||||+++++.-
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~----~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEIN----QGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEe----CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccc
Confidence 378899998882111011369999999998 799999999999999999999976531
Q ss_pred --------------------------Hhhccccccccc----cccchH---------------------HHHHHHcCCc-
Q 040956 851 --------------------------LAQLGCFVPCEM----CVLSLA---------------------DTIFTRLGAT- 878 (1085)
Q Consensus 851 --------------------------laqiG~~VPa~~----a~i~~~---------------------d~I~trig~~- 878 (1085)
...+| |||+.. ...++. ..++..+|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVG-VVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceE-EEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh
Confidence 11234 777642 111222 2234455553
Q ss_pred ccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 879 DRIMT---GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 879 D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
+.... .+|..+.....+|++| +.+|+|+|||||++|+|+... .....++..+.+. |.|+|++||+.+.+..++
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL--~~~P~lLlLDEPt~~LD~~~~-~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGIL--AMEPDFLVFDEPTAGLDPQGV-KEILEIFDNLNKQ-GKTIILVTHDLDNVLEWT 232 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC-CCEEEEEeeCHHHHHHhC
Confidence 22333 3444444444577777 899999999999999997654 4455667777654 899999999999988888
Q ss_pred Cccce
Q 040956 956 SHPHV 960 (1085)
Q Consensus 956 ~~~~V 960 (1085)
++..+
T Consensus 233 drv~v 237 (305)
T PRK13651 233 KRTIF 237 (305)
T ss_pred CEEEE
Confidence 76543
No 117
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2e-15 Score=169.40 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=113.1
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|+++++...|-.....+..+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFE----QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78888888872111012469999999998 79999999999999999999997653
Q ss_pred ----HHhhcccccccccc----ccchHH---------------------HHHHHcCCc-cc---cccccchhhHHhHHHH
Q 040956 850 ----ILAQLGCFVPCEMC----VLSLAD---------------------TIFTRLGAT-DR---IMTGESTFLVECTETA 896 (1085)
Q Consensus 850 ----ilaqiG~~VPa~~a----~i~~~d---------------------~I~trig~~-D~---i~~~~Stf~~Em~ela 896 (1085)
+...+| |||+... ..++.+ .++..+|.. +. ....+|..+.....+|
T Consensus 79 ~~~~~~~~ig-~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 79 YIRPVRKRIG-MVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred hHHHHHhheE-EEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 112345 7776421 112222 234455553 22 2344555555556677
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
++| +.+|+++|||||++|.|+..... ...++..+.++.|.|+|++||+.+++..++++..+
T Consensus 158 raL--~~~p~illlDEPt~~LD~~~~~~-l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~ 218 (286)
T PRK13646 158 SIL--AMNPDIIVLDEPTAGLDPQSKRQ-VMRLLKSLQTDENKTIILVSHDMNEVARYADEVIV 218 (286)
T ss_pred HHH--HhCCCEEEEECCcccCCHHHHHH-HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 777 89999999999999999776544 44566666654589999999999998888876443
No 118
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.5e-15 Score=176.31 Aligned_cols=161 Identities=19% Similarity=0.158 Sum_probs=116.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++++++.| ++..++++++|++. +|++++|+||||||||||||+|+++.-.
T Consensus 18 ~~l~l~~v~~~~-----~~~~~l~~vsl~i~----~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 18 PLLEIRNLTKSF-----DGQHAVDDVSLTIY----KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred ceEEEEeEEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 579999999988 34578999999997 7899999999999999999999876411
Q ss_pred --hhcccccccccccc---chHHH---------------------HHHHcCCccc---cccccchhhHHhHHHHHHHHhC
Q 040956 852 --AQLGCFVPCEMCVL---SLADT---------------------IFTRLGATDR---IMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 852 --aqiG~~VPa~~a~i---~~~d~---------------------I~trig~~D~---i~~~~Stf~~Em~ela~iL~~a 902 (1085)
..+| ||+++.+-+ ++.++ ++..++..+. ....+|..+.....++++| +
T Consensus 89 ~~r~ig-~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL--~ 165 (377)
T PRK11607 89 YQRPIN-MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSL--A 165 (377)
T ss_pred HHCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH--h
Confidence 1244 666654322 23332 3344444322 2334555555555577777 9
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.+|+|+|||||++|+|......+.. .+..+.++.+.|+|++||+.+.+..++++..+..
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~-~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~ 224 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQL-EVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMN 224 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEe
Confidence 9999999999999999777655544 4444555558999999999999988888765543
No 119
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=2.3e-15 Score=166.23 Aligned_cols=157 Identities=16% Similarity=0.135 Sum_probs=109.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++++++.| ++..+++|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 11 ~~l~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i 81 (258)
T PRK14268 11 PQIKVENLNLWY-----GEKQALKNVSMQIP----KNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81 (258)
T ss_pred eeEEEeeeEEEe-----CCeeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEc
Confidence 679999999887 34579999999998 799999999999999999999987531
Q ss_pred ----------Hhhccccccccccc--cchHHH---------------------HHHHcCCc-------cccccccchhhH
Q 040956 851 ----------LAQLGCFVPCEMCV--LSLADT---------------------IFTRLGAT-------DRIMTGESTFLV 890 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a~--i~~~d~---------------------I~trig~~-------D~i~~~~Stf~~ 890 (1085)
...+| |+|+.... .++.+. ++..++.. +.....+|..+.
T Consensus 82 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 82 YEPDVDVVELRKNVG-MVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred ccccchHHHHhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 11233 66654311 222222 23333331 111223444444
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
....++++| +.+|+++|||||++|.|+..... ...++..+. + ++++|++||+.+++..++++..+
T Consensus 161 qrv~laral--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~ 225 (258)
T PRK14268 161 QRLCIARTL--AVKPKIILFDEPTSALDPISTAR-IEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGF 225 (258)
T ss_pred HHHHHHHHH--HcCCCEEEEeCCCcccCHHHHHH-HHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEE
Confidence 444567777 89999999999999999776554 445566664 3 68999999999998888876544
No 120
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=8.8e-16 Score=160.24 Aligned_cols=154 Identities=23% Similarity=0.254 Sum_probs=101.1
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccc-ccccc-cccch-H
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF-VPCEM-CVLSL-A 868 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~-VPa~~-a~i~~-~ 868 (1085)
++++++..| ++..++++++|++. +|++++|+||||+|||||||+++++. -..-|.. +.... ...+. .
T Consensus 2 ~~~~l~~~~-----~~~~~l~~i~~~i~----~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 2 ELKNVSKRY-----GQKTVLNDVSLNIE----AGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred EEEEEEEEE-----CCeEEEeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhH
Confidence 567777766 24578999999997 79999999999999999999998753 1222211 11100 00000 0
Q ss_pred HH-------------HHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHH
Q 040956 869 DT-------------IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE 935 (1085)
Q Consensus 869 d~-------------I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~ 935 (1085)
.. ++..+...+++....|..+.....++++| +.+|.++|||||+.|.|+.... ....++..+.+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al--~~~p~llilDEP~~~LD~~~~~-~l~~~l~~~~~ 148 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARAL--AMDPDVLLLDEPTSALDPITRR-EVRALLKSLQA 148 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHH--HCCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHH
Confidence 00 11111112222222566565566677777 8999999999999999966644 45556666666
Q ss_pred hcCceEEEEEechhHHHhhcCcc
Q 040956 936 RINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 936 ~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+.++|++||+++++..++++.
T Consensus 149 ~~~~tiii~sH~~~~~~~~~d~i 171 (178)
T cd03229 149 QLGITVVLVTHDLDEAARLADRV 171 (178)
T ss_pred hcCCEEEEEeCCHHHHHHhcCEE
Confidence 44689999999999988777653
No 121
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.2e-15 Score=168.75 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=114.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
++|+++|+.+.|- ++..+.++++|.+. +|++++|+||||+|||||||+|+++.
T Consensus 4 ~~l~~~~l~~~~~----~~~~~l~~vs~~i~----~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 4 YILKVEELNYNYS----DGTHALKGININIK----KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred ceEEEEeEEEEeC----CCCeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcc
Confidence 4789999999882 23579999999998 79999999999999999999997653
Q ss_pred ----HHhhccccccccc----cccchHHH---------------------HHHHcCCcc---ccccccchhhHHhHHHHH
Q 040956 850 ----ILAQLGCFVPCEM----CVLSLADT---------------------IFTRLGATD---RIMTGESTFLVECTETAS 897 (1085)
Q Consensus 850 ----ilaqiG~~VPa~~----a~i~~~d~---------------------I~trig~~D---~i~~~~Stf~~Em~ela~ 897 (1085)
+...+| |+|+.. ...++.+. ++.++|..+ .....+|..+.....+++
T Consensus 76 ~~~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 76 GLMKLRESVG-MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred hHHHHHhhEE-EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 112345 777753 12233332 334444433 233345555555555777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+| +.+|.|+|||||+.|.|+..... ...++..+.++.|.|+|++||+.+.+..++++..+
T Consensus 155 aL--~~~p~lLilDEPt~gLD~~~~~~-l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~ 214 (283)
T PRK13636 155 VL--VMEPKVLVLDEPTAGLDPMGVSE-IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV 214 (283)
T ss_pred HH--HcCCCEEEEeCCccCCCHHHHHH-HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 77 89999999999999999766544 44566666654588999999999999888876543
No 122
>PRK10908 cell division protein FtsE; Provisional
Probab=99.63 E-value=1.7e-15 Score=163.41 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=106.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+..-|. ++..+.++++|.+. +|++++|+||||+|||||||+|+++.-
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYL----GGRQALQGVTFHMR----PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEec----CCCeEEeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhH
Confidence 56778776662 23579999999998 799999999999999999999976431
Q ss_pred ----Hhhcccccccccc---ccchHH---------------------HHHHHcCCccccccc---cchhhHHhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLAD---------------------TIFTRLGATDRIMTG---ESTFLVECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d---------------------~I~trig~~D~i~~~---~Stf~~Em~ela~iL 899 (1085)
...+| |+|+... ..++.+ .++.+++..+..... +|..+.....+++++
T Consensus 74 ~~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 74 VPFLRRQIG-MIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHHHHhheE-EEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 11233 6666432 122222 233444544333333 344444444466666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||+.|.|+.....+ ..++..+.++ +.++|++||+++++..++++.
T Consensus 153 --~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i 207 (222)
T PRK10908 153 --VNKPAVLLADEPTGNLDDALSEGI-LRLFEEFNRV-GVTVLMATHDIGLISRRSYRM 207 (222)
T ss_pred --HcCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE
Confidence 899999999999999997665444 4455666554 789999999999998887754
No 123
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.63 E-value=1.5e-15 Score=161.92 Aligned_cols=152 Identities=17% Similarity=0.075 Sum_probs=105.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|++++++..| +...+.+|++|.+. +|++++|+||||+|||||+|++++..-
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACER-----DERILFSGLSFTLN----AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEE-----CCEEEEecceEEEC----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHh
Confidence 6778887776 34578999999998 799999999999999999999976421
Q ss_pred Hhhcccccccccc---ccchH------------------HHHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCc
Q 040956 851 LAQLGCFVPCEMC---VLSLA------------------DTIFTRLGATDRIM---TGESTFLVECTETASVLQKATQDS 906 (1085)
Q Consensus 851 laqiG~~VPa~~a---~i~~~------------------d~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~s 906 (1085)
..++| |+|.... ..++. +.++.++|..+... ..+|..+.....+++++ +.+|+
T Consensus 73 ~~~~~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al--~~~p~ 149 (204)
T PRK13538 73 HQDLL-YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLW--LTRAP 149 (204)
T ss_pred hhheE-EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH--hcCCC
Confidence 11233 4443321 11222 23444555543333 33444444455567777 89999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 907 LvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
++|||||++|.|+.....+ ..++..+.++ +.++|++||+.+++..+..
T Consensus 150 llllDEPt~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARL-EALLAQHAEQ-GGMVILTTHQDLPVASDKV 197 (204)
T ss_pred EEEEeCCCccCCHHHHHHH-HHHHHHHHHC-CCEEEEEecChhhhccCCc
Confidence 9999999999997775554 4566666554 7899999999999887554
No 124
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.63 E-value=2.3e-15 Score=164.42 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=106.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
+|+++++...| ++..+.++++|++. +|++++|+||||+|||||||++++..-
T Consensus 2 ~i~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSF-----DGFKALNDLSLYVD----PGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEc-----CCeEEeeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHH
Confidence 57888988877 34579999999998 799999999999999999999987531
Q ss_pred --H-hhcccccccccc---ccchHH-----------------------------HHHHHcCCccccccc---cchhhHHh
Q 040956 851 --L-AQLGCFVPCEMC---VLSLAD-----------------------------TIFTRLGATDRIMTG---ESTFLVEC 892 (1085)
Q Consensus 851 --l-aqiG~~VPa~~a---~i~~~d-----------------------------~I~trig~~D~i~~~---~Stf~~Em 892 (1085)
. ..+| |+|+... .+++.+ .++.++|..+..... +|..+...
T Consensus 73 ~~~~~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 73 QIARAGIG-RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred HHHhcCee-EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 0 1133 5554321 112222 234445544333333 33333334
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
..+++++ +.+|+++|||||++|.|+.....+ +.++..+.+ +.++|++||+++++..++++..
T Consensus 152 v~laral--~~~p~~lllDEPt~~LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~ 213 (242)
T TIGR03411 152 LEIGMLL--MQDPKLLLLDEPVAGMTDEETEKT-AELLKSLAG--KHSVVVVEHDMEFVRSIADKVT 213 (242)
T ss_pred HHHHHHH--hcCCCEEEecCCccCCCHHHHHHH-HHHHHHHhc--CCEEEEEECCHHHHHHhCCEEE
Confidence 4466666 899999999999999997765544 445555543 5799999999999988887643
No 125
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.1e-15 Score=165.98 Aligned_cols=160 Identities=22% Similarity=0.209 Sum_probs=116.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.+.+++++|.|- ++..+.+|++|.+. +|+.++|+||||||||||+++++++..-
T Consensus 2 ~~i~~~~l~~~y~----~~~~~l~~v~~~i~----~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYP----GRKAALKDVSLEIE----KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcC----CCceeeeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhh
Confidence 4688999999983 22589999999998 7999999999999999999999775421
Q ss_pred -----hhccccccccc----cccc---------------------hHHHHHHHcCCccc---cccccchhhHHhHHHHHH
Q 040956 852 -----AQLGCFVPCEM----CVLS---------------------LADTIFTRLGATDR---IMTGESTFLVECTETASV 898 (1085)
Q Consensus 852 -----aqiG~~VPa~~----a~i~---------------------~~d~I~trig~~D~---i~~~~Stf~~Em~ela~i 898 (1085)
.++| +|.+.. ..-+ .++.....+|..+. ....+|........+|.+
T Consensus 74 ~~~~~~~vG-~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 74 LLELRQKVG-LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred HHHhhcceE-EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHH
Confidence 2234 443321 0111 12234455565543 334455555555668888
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
| |.+|.++||||||+|.|+.-... ...++..|....|.|+|++|||++++..++++..+
T Consensus 153 L--a~~P~iliLDEPta~LD~~~~~~-l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v 211 (235)
T COG1122 153 L--AMGPEILLLDEPTAGLDPKGRRE-LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211 (235)
T ss_pred H--HcCCCEEEEcCCCCCCCHHHHHH-HHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence 8 99999999999999999776544 55677777776678999999999999998886544
No 126
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.63 E-value=1.8e-15 Score=163.66 Aligned_cols=153 Identities=21% Similarity=0.172 Sum_probs=105.5
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-----HH---------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-----IL--------------- 851 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-----il--------------- 851 (1085)
+++|+...| ++..+.+|++|++. +|++++|+||||+|||||||+|+++. -.
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 2 ELRDLNVYY-----GDKHALKDISLDIP----KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred EEEEEEEEc-----CCceeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 567777666 34579999999998 79999999999999999999998875 11
Q ss_pred --------hhcccccccccc--ccchHH----------------------HHHHHcCCccccc-----cccchhhHHhHH
Q 040956 852 --------AQLGCFVPCEMC--VLSLAD----------------------TIFTRLGATDRIM-----TGESTFLVECTE 894 (1085)
Q Consensus 852 --------aqiG~~VPa~~a--~i~~~d----------------------~I~trig~~D~i~-----~~~Stf~~Em~e 894 (1085)
.++| |+|+... ..++.+ .++..+|..+... ..+|..+.....
T Consensus 73 ~~~~~~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 73 DVDVLELRRRVG-MVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred chHHHHHHhhEE-EEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH
Confidence 1233 6666431 112222 2334445543222 334444444455
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++++| +.+|+++|||||++|.|+..... ...++..+.++ .++|++||+.+++..++++..
T Consensus 152 la~al--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~ 211 (227)
T cd03260 152 LARAL--ANEPEVLLLDEPTSALDPISTAK-IEELIAELKKE--YTIVIVTHNMQQAARVADRTA 211 (227)
T ss_pred HHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEE
Confidence 66666 89999999999999999766544 44555566543 789999999999888777543
No 127
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.63 E-value=3.6e-15 Score=165.67 Aligned_cols=164 Identities=23% Similarity=0.197 Sum_probs=111.9
Q ss_pred CEEEEEcceeeeeec----CCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------
Q 040956 789 PVLKIKGLWHPFALG----ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~----~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------- 850 (1085)
++|+++|+.+.|-.. ...+..+++|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLK----SGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA 77 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence 368899998877210 0013579999999998 799999999999999999999976531
Q ss_pred ----------Hhhcccccccccc-----ccch----------------------HHHHHHHcCCc-cc---cccccchhh
Q 040956 851 ----------LAQLGCFVPCEMC-----VLSL----------------------ADTIFTRLGAT-DR---IMTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a-----~i~~----------------------~d~I~trig~~-D~---i~~~~Stf~ 889 (1085)
...+| |+|+... ..+. ++.++.++|.. +. ....+|..+
T Consensus 78 ~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 78 KLNRAQRKAFRRDIQ-MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred ccChhHHHHHHhcEE-EEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 11233 5665421 0111 22344455553 22 223345555
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|+++|||||++|+|..... ....+++.+.++.+.++|++||+.+++..++++..+
T Consensus 157 ~qrl~laral--~~~p~lllLDEPt~~LD~~~~~-~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~ 224 (268)
T PRK10419 157 LQRVCLARAL--AVEPKLLILDEAVSNLDLVLQA-GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMV 224 (268)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCCcccCHHHHH-HHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEE
Confidence 4455567777 8999999999999999976544 345566666655578999999999999888876433
No 128
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.7e-15 Score=169.29 Aligned_cols=158 Identities=20% Similarity=0.169 Sum_probs=110.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++++...|- .....++++++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 4 ~~l~~~~l~~~~~---~~~~~~l~~vsl~i~----~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 4 EIIRVEHISFRYP---DAATYALKDVSFSVY----EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV 76 (279)
T ss_pred ceEEEEEEEEEeC---CCCccceeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH
Confidence 5789999998882 013569999999998 799999999999999999999987531
Q ss_pred ---Hhhcccccccccc----ccchHHH---------------------HHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMC----VLSLADT---------------------IFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~a----~i~~~d~---------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
...+| |+|+... ..++.+. ++..+|..+.+.. .+|..+.....++++|
T Consensus 77 ~~~~~~i~-~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 77 WDVRRQVG-MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred HHHhhheE-EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 12344 6666431 1233332 3344454443333 3444444444567777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+|+|||||++|+|+..... ...++..+.++.++|+|++||+++++.. +++.
T Consensus 156 --~~~p~lllLDEPt~gLD~~~~~~-l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i 210 (279)
T PRK13635 156 --ALQPDIIILDEATSMLDPRGRRE-VLETVRQLKEQKGITVLSITHDLDEAAQ-ADRV 210 (279)
T ss_pred --HcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 89999999999999999776544 4456666665458899999999998864 5543
No 129
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.63 E-value=2.3e-15 Score=166.07 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=111.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|++++++..| ++..++++++|++. +|++++|+||||+|||||||++++..-
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 4 NKLNVIDLHKRY-----GEHEVLKGVSLQAN----AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred ccEEEeeeEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccc
Confidence 468999999888 34679999999998 799999999999999999999976531
Q ss_pred ----------------Hhhccccccccccc---cchHHH----------------------HHHHcCCcccc----cccc
Q 040956 851 ----------------LAQLGCFVPCEMCV---LSLADT----------------------IFTRLGATDRI----MTGE 885 (1085)
Q Consensus 851 ----------------laqiG~~VPa~~a~---i~~~d~----------------------I~trig~~D~i----~~~~ 885 (1085)
...+| |+|+...- +++.+. ++.++|..+.. ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred cccccccccchHHHHHhhceE-EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 01233 66654321 222222 33444543322 2234
Q ss_pred chhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
|..+.....++++| +.+|+++|||||++|.|+..... ...++..+.+. |+++|++||+.+++..++++..
T Consensus 154 S~G~~qrv~laral--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 154 SGGQQQRVSIARAL--AMEPEVLLFDEPTSALDPELVGE-VLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred CHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEE
Confidence 44444445577777 89999999999999999776554 44566666654 8999999999999988777543
No 130
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=4.1e-15 Score=169.35 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=113.5
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------- 850 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------- 850 (1085)
.+.|+++++++.|-........+++|++|.+. +|++++|+||||||||||+|+++++.-
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~----~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFE----KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc
Confidence 37899999999883111112469999999998 799999999999999999999976421
Q ss_pred --------------------Hhhccccccccc----cccchHH---------------------HHHHHcCCc-cccc--
Q 040956 851 --------------------LAQLGCFVPCEM----CVLSLAD---------------------TIFTRLGAT-DRIM-- 882 (1085)
Q Consensus 851 --------------------laqiG~~VPa~~----a~i~~~d---------------------~I~trig~~-D~i~-- 882 (1085)
..++| ||++.. ...++.+ .++..+|.. +...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVS-MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred ccccccccccccccchHHHHHhcEE-EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 11234 666642 1112222 233444543 2222
Q ss_pred -cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 883 -TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 883 -~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
..+|..+.....+|++| +.+|+++|||||++|+|+.....+ ..++..+.++ +.|+|++||+.+.+..++++..+.
T Consensus 174 ~~~LSgGqkqRvaiAraL--~~~p~iLLLDEPtsgLD~~~~~~l-~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGIL--AIQPEILIFDEPTAGLDPKGEHEM-MQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred cccCCHHHHHHHHHHHHH--HcCCCEEEEECCccCCCHHHHHHH-HHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 23455454555577777 899999999999999998775544 4555666554 889999999999888888765443
No 131
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.5e-15 Score=165.63 Aligned_cols=156 Identities=21% Similarity=0.190 Sum_probs=107.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
+|.++++.+.| ++..++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (255)
T PRK11231 2 TLRTENLTVGY-----GTKRILNDLSLSLP----TGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72 (255)
T ss_pred EEEEEeEEEEE-----CCEEEEeeeeeEEc----CCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHH
Confidence 47888988877 34679999999997 799999999999999999999977531
Q ss_pred --Hhhcccccccccc---ccchHHH-------------------------HHHHcCCccccc---cccchhhHHhHHHHH
Q 040956 851 --LAQLGCFVPCEMC---VLSLADT-------------------------IFTRLGATDRIM---TGESTFLVECTETAS 897 (1085)
Q Consensus 851 --laqiG~~VPa~~a---~i~~~d~-------------------------I~trig~~D~i~---~~~Stf~~Em~ela~ 897 (1085)
...+| |+|++.. .+++.+. ++..+|..+... ..+|..+.....+++
T Consensus 73 ~~~~~i~-~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 73 QLARRLA-LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HHhhheE-EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 11244 6666431 1122222 233334332222 234444444444666
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++ +.+|+|+|||||++|.|+..... ...++..+.++ ++++|++||+.+.+..++++..
T Consensus 152 al--~~~p~llllDEP~~~LD~~~~~~-l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~ 209 (255)
T PRK11231 152 VL--AQDTPVVLLDEPTTYLDINHQVE-LMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLV 209 (255)
T ss_pred HH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEE
Confidence 66 89999999999999999766544 44455566554 7899999999999888877543
No 132
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.5e-15 Score=168.88 Aligned_cols=162 Identities=17% Similarity=0.122 Sum_probs=113.0
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++++-|-........+++|++|++. +|++++|+||||+|||||||+++++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIP----SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78888888882111012469999999998 899999999999999999999976531
Q ss_pred -----Hhhccccccccc----cccchH---------------------HHHHHHcCCc-c---ccccccchhhHHhHHHH
Q 040956 851 -----LAQLGCFVPCEM----CVLSLA---------------------DTIFTRLGAT-D---RIMTGESTFLVECTETA 896 (1085)
Q Consensus 851 -----laqiG~~VPa~~----a~i~~~---------------------d~I~trig~~-D---~i~~~~Stf~~Em~ela 896 (1085)
...+| |||+.. ...++. +.++..+|.. + .....+|..+.....+|
T Consensus 79 ~~~~~~~~ig-~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 79 KLKPLRKKVG-IVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred hHHHHHhhEE-EEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 11345 677642 111222 2234455654 2 22334555555555577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
++| +.+|+++|||||++|+|+..... ...++..+.++.|.|+|++||+.+++..++++..+
T Consensus 158 raL--~~~P~llllDEPt~~LD~~~~~~-l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~ 218 (290)
T PRK13634 158 GVL--AMEPEVLVLDEPTAGLDPKGRKE-MMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV 218 (290)
T ss_pred HHH--HcCCCEEEEECCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 777 89999999999999999776544 44566666665588999999999999888876543
No 133
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=4.1e-15 Score=163.50 Aligned_cols=155 Identities=20% Similarity=0.214 Sum_probs=107.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
|.|+++++.+.| ++..++++++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 5 ~~l~~~~l~~~~-----~~~~il~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 5 PKMEARGLSFFY-----GDFQALHDISLEFE----QNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred cEEEEeeeEEEE-----CCeeeecceeEEEe----CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 789999999888 34579999999998 799999999999999999999987531
Q ss_pred ----------Hhhccccccccccc--cchHHHH----------------------HHHcCCcc-------ccccccchhh
Q 040956 851 ----------LAQLGCFVPCEMCV--LSLADTI----------------------FTRLGATD-------RIMTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a~--i~~~d~I----------------------~trig~~D-------~i~~~~Stf~ 889 (1085)
..++| |+|+.... .++.+.+ +..+|..+ .....+|..+
T Consensus 76 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 154 (253)
T PRK14242 76 YDPHVDVVELRRRVG-MVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQ 154 (253)
T ss_pred cccccCHHHHhhcEE-EEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 01233 56654311 1233332 12223211 1122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.....++++| +.+|+++|||||++|.|+.....+ ..++..+. + +.++|++||+.+.+..++++.
T Consensus 155 ~qrv~laral--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 155 QQRLCIARAL--AVEPEVLLMDEPASALDPIATQKI-EELIHELK-A-RYTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHh-c-CCeEEEEEecHHHHHHhCCEE
Confidence 4444566667 899999999999999997765544 44555553 3 689999999999988877754
No 134
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.63 E-value=2.1e-15 Score=160.49 Aligned_cols=153 Identities=20% Similarity=0.137 Sum_probs=104.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++.+.| ++..+++|++|.+. +|++++|+||||+|||||||++++..-
T Consensus 1 l~i~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCER-----DGRALFSGLSFTLA----AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEe-----CCceeeccceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHh
Confidence 3567777776 34678999999997 799999999999999999999976531
Q ss_pred Hhhcccccccccc---ccchH---------------HHHHHHcCCcccc---ccccchhhHHhHHHHHHHHhCCCCcEEE
Q 040956 851 LAQLGCFVPCEMC---VLSLA---------------DTIFTRLGATDRI---MTGESTFLVECTETASVLQKATQDSLVI 909 (1085)
Q Consensus 851 laqiG~~VPa~~a---~i~~~---------------d~I~trig~~D~i---~~~~Stf~~Em~ela~iL~~at~~sLvL 909 (1085)
..++| |+|+... ..++. +.++..+|..+.. ...+|..+.....+++++ +.+|+++|
T Consensus 72 ~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral--~~~p~lll 148 (201)
T cd03231 72 ARGLL-YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLL--LSGRPLWI 148 (201)
T ss_pred hhheE-EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHH--hcCCCEEE
Confidence 11334 5554321 11222 2344555554332 233444444445567777 89999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 910 LDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
||||++|.|+.....+ ..++..+.++ ++++|++||+......++++
T Consensus 149 lDEPt~~LD~~~~~~l-~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 149 LDEPTTALDKAGVARF-AEAMAGHCAR-GGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCchhhhhccce
Confidence 9999999997775554 4455555554 88999999998776655543
No 135
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.63 E-value=1.9e-15 Score=164.89 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=106.6
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------Hh
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------LA 852 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------la 852 (1085)
+++++..-| ++..++++++|++. +|++++|+||||+|||||+++|+++.- ..
T Consensus 2 ~i~~l~~~~-----~~~~il~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 2 EIANISKRF-----GSFQALDDVNLEVP----TGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDR 72 (237)
T ss_pred EEEEEEEEE-----CCeeeeeeEEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhc
Confidence 566776666 24579999999997 799999999999999999999987531 01
Q ss_pred hccccccccccc---cchH---------------------HHHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMCV---LSLA---------------------DTIFTRLGATDRIMT---GESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a~---i~~~---------------------d~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~ 905 (1085)
.+| |+|+.... .++. +.++.+++..+.... ..|..+.....++++| +.+|
T Consensus 73 ~i~-~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral--~~~p 149 (237)
T TIGR00968 73 KIG-FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARAL--AVEP 149 (237)
T ss_pred CEE-EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH--hcCC
Confidence 233 66654211 1111 234455555433333 3444444444566666 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+++|||||++|.|..... ..+.++..+.++.++++|++||+++++..++++..
T Consensus 150 ~llllDEP~~~LD~~~~~-~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~ 202 (237)
T TIGR00968 150 QVLLLDEPFGALDAKVRK-ELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV 202 (237)
T ss_pred CEEEEcCCcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 999999999999966544 44556666655447899999999999888777643
No 136
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.9e-15 Score=168.08 Aligned_cols=162 Identities=17% Similarity=0.135 Sum_probs=111.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|.++++..-|-........+++|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~----~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELE----EGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEe----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 367888887772000001469999999998 899999999999999999999976520
Q ss_pred ------Hhhccccccccc----cccchHHH---------------------HHHHcCCc-c---ccccccchhhHHhHHH
Q 040956 851 ------LAQLGCFVPCEM----CVLSLADT---------------------IFTRLGAT-D---RIMTGESTFLVECTET 895 (1085)
Q Consensus 851 ------laqiG~~VPa~~----a~i~~~d~---------------------I~trig~~-D---~i~~~~Stf~~Em~el 895 (1085)
...+| |+|+.. ...++.+. ++..+|.. + .....+|..+.....+
T Consensus 78 ~~~~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 78 KNLKKLRKKVS-LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred chHHHHHhceE-EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 11244 677652 11233332 23344543 2 2223455555555557
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+++| +.+|+++|||||++|+|+..... ...++..+.++ |.|+|++||+++.+..++++..+
T Consensus 157 aral--~~~p~lLlLDEPt~gLD~~~~~~-l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~ 217 (287)
T PRK13641 157 AGVM--AYEPEILCLDEPAAGLDPEGRKE-MMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLV 217 (287)
T ss_pred HHHH--HcCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 7777 89999999999999999776544 45566777654 88999999999999888876543
No 137
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.63 E-value=2.6e-15 Score=159.69 Aligned_cols=150 Identities=24% Similarity=0.185 Sum_probs=102.7
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-HHhhcc---------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-ILAQLG--------------- 855 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-ilaqiG--------------- 855 (1085)
.+++++..| ++..+.++++|.+. +|++++|+||||+|||||||++++.. .-..-|
T Consensus 2 ~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 2 EIKDLHVSV-----GGKEILKGVNLTIK----KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred eEEEEEEEe-----CCEEeeeccceEEC----CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 466776666 24579999999987 79999999999999999999998863 111222
Q ss_pred -------ccccccccccc--hHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 040956 856 -------CFVPCEMCVLS--LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926 (1085)
Q Consensus 856 -------~~VPa~~a~i~--~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia 926 (1085)
.|+|+....++ .+..+. +.....+|..+.....++++| +.+|+++|||||++|+|+..... .
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l------~~~~~~LS~G~~qrv~laral--~~~p~illlDEPt~~LD~~~~~~-l 143 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL------RYVNEGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGLDIDALRL-V 143 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH------hhccccCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-H
Confidence 13443321111 011111 112235666666666677777 89999999999999999766544 4
Q ss_pred HHHHHHHHHhcCceEEEEEechhHHHh-hcCccce
Q 040956 927 YAVFRQLVERINCRLLFATHYHPLTKE-FASHPHV 960 (1085)
Q Consensus 927 ~avle~L~~~~~~tiL~aTH~~el~~~-~~~~~~V 960 (1085)
+.++..+.++ ++++|++||+++.+.. ++++..+
T Consensus 144 ~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~ 177 (200)
T cd03217 144 AEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHV 177 (200)
T ss_pred HHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEE
Confidence 5566666554 7899999999998876 5765433
No 138
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.63 E-value=2.5e-15 Score=166.58 Aligned_cols=161 Identities=20% Similarity=0.234 Sum_probs=109.9
Q ss_pred EEEEEcceeeeeecC----CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------
Q 040956 790 VLKIKGLWHPFALGE----NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~----~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------- 850 (1085)
+|.++++++-|-... .++..+++|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIE----EGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 478888887772100 013579999999998 899999999999999999999976530
Q ss_pred ---------Hhhcccccccccc-----ccchHH----------------------HHHHHcCCcc----ccccccchhhH
Q 040956 851 ---------LAQLGCFVPCEMC-----VLSLAD----------------------TIFTRLGATD----RIMTGESTFLV 890 (1085)
Q Consensus 851 ---------laqiG~~VPa~~a-----~i~~~d----------------------~I~trig~~D----~i~~~~Stf~~ 890 (1085)
...+| |+|+... ..++.+ .++..+|..+ .....+|..+.
T Consensus 78 ~~~~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 78 LDRKQRRAFRRDVQ-LVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred cCHHHHHHHhhceE-EEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 11244 6666521 122222 2344455531 22233454444
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
....++++| +.+|+++|||||++|+|+..... ...++..+.+..+.|+|++||+.+.+..++++.
T Consensus 157 qrv~laral--~~~p~illLDEPt~~LD~~~~~~-l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 157 QRINIARAL--AVKPKLIVLDEAVSNLDMVLQAV-ILELLRKLQQAFGTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEE
Confidence 455577777 89999999999999999766444 445566665544789999999999998877754
No 139
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.4e-15 Score=167.19 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=109.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|.++++.+.|-. ....+++|++|.+. +|++++|+||||+|||||+|+|+++.-
T Consensus 6 ~~l~i~~l~~~~~~---~~~~~l~~isl~i~----~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 6 SIIVFKNVSFQYQS---DASFTLKDVSFNIP----KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF 78 (269)
T ss_pred ceEEEEEEEEEcCC---CCCcceeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 67999999988821 12468999999998 799999999999999999999977531
Q ss_pred ---Hhhcccccccccc----ccch---------------------HHHHHHHcCCccccc---cccchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMC----VLSL---------------------ADTIFTRLGATDRIM---TGESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~a----~i~~---------------------~d~I~trig~~D~i~---~~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+... ...+ +..+...+|..+... ..+|..+.....+++++
T Consensus 79 ~~~~~~i~-~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (269)
T PRK13648 79 EKLRKHIG-IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157 (269)
T ss_pred HHHHhhee-EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 12344 6665431 0111 122344455443332 34555555555567777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+|+|||||++|.|+.....+. .++..+.++.+.|+|++||+.+.+.. +++.
T Consensus 158 --~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i 212 (269)
T PRK13648 158 --ALNPSVIILDEATSMLDPDARQNLL-DLVRKVKSEHNITIISITHDLSEAME-ADHV 212 (269)
T ss_pred --HcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCchHHhc-CCEE
Confidence 8999999999999999987765544 45555555447899999999998864 5543
No 140
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.62 E-value=2.2e-15 Score=166.45 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=108.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
+|+++++.+.| ++..+++|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRL-----GGRTLLDDVSLTLR----PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEe-----CCeeeeeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHH
Confidence 47888988877 34679999999998 799999999999999999999977531
Q ss_pred --Hhhcccccccccc---ccchHHH---------------------HHHHcCCcccc---ccccchhhHHhHHHHHHHHh
Q 040956 851 --LAQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRI---MTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 851 --laqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i---~~~~Stf~~Em~ela~iL~~ 901 (1085)
..++| |+|+... ..++.+. ++..+|..+.. ...+|..+.....++++|
T Consensus 73 ~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al-- 149 (258)
T PRK13548 73 ELARRRA-VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL-- 149 (258)
T ss_pred HhhhheE-EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH--
Confidence 11233 6665431 1223332 33444443322 233444444455577777
Q ss_pred C------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 902 A------TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 902 a------t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+ .+|+++|||||++|+|+.....+ ..++..+.++.+.++|++||+++++..++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHV-LRLARQLAHERGLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhcCEE
Confidence 5 48999999999999997765544 44555665334789999999999988887754
No 141
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.62 E-value=2.5e-15 Score=166.90 Aligned_cols=163 Identities=14% Similarity=0.105 Sum_probs=111.4
Q ss_pred CEEEEEcceeeeeecC----CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------
Q 040956 789 PVLKIKGLWHPFALGE----NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~----~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------- 850 (1085)
++|+++|+.+-|-... .+...+++|++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~----~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLR----EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH 78 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEec----CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 5789999998872100 012469999999998 799999999999999999999977531
Q ss_pred ------H-hhcccccccccc-----ccch----------------------HHHHHHHcCCc-ccc---ccccchhhHHh
Q 040956 851 ------L-AQLGCFVPCEMC-----VLSL----------------------ADTIFTRLGAT-DRI---MTGESTFLVEC 892 (1085)
Q Consensus 851 ------l-aqiG~~VPa~~a-----~i~~----------------------~d~I~trig~~-D~i---~~~~Stf~~Em 892 (1085)
. ..+| |+|+... ..++ ++.++..+|.. +.. ...+|..+...
T Consensus 79 ~~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 157 (267)
T PRK15112 79 FGDYSYRSQRIR-MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQR 157 (267)
T ss_pred CCchhhHhccEE-EEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHH
Confidence 0 1244 6665421 0011 12244555653 222 23455555445
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
..++++| +.+|.++|||||++|.|+.... ....++..+.++.+.++|++||+.+.+..++++..
T Consensus 158 v~laral--~~~p~lllLDEPt~~LD~~~~~-~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~ 221 (267)
T PRK15112 158 LGLARAL--ILRPKVIIADEALASLDMSMRS-QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL 221 (267)
T ss_pred HHHHHHH--HhCCCEEEEcCCcccCCHHHHH-HHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE
Confidence 5566667 8999999999999999976544 34455666655447899999999999988777543
No 142
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=3.2e-15 Score=163.29 Aligned_cols=155 Identities=22% Similarity=0.229 Sum_probs=107.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++++.+.| ++..++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFY-----GAHQALFDITLDCP----QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEE-----CCeeeEeeeeeEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccc
Confidence 36788888877 34579999999998 799999999999999999999976531
Q ss_pred --------Hhhcccccccccc---ccchHHH----------------------HHHHcCCccccc---cccchhhHHhHH
Q 040956 851 --------LAQLGCFVPCEMC---VLSLADT----------------------IFTRLGATDRIM---TGESTFLVECTE 894 (1085)
Q Consensus 851 --------laqiG~~VPa~~a---~i~~~d~----------------------I~trig~~D~i~---~~~Stf~~Em~e 894 (1085)
..++| |+|+... ..++.+. ++..+|..+... ..+|..+.....
T Consensus 73 ~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 73 SDKAIRELRRNVG-MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred chhhHHHHHhheE-EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 11244 6666432 1223332 233444433222 234444444445
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+++++ +.+|+|+|||||++|.|+..... ...++..+.++ +.++|++||+.+++..++++.
T Consensus 152 laral--~~~p~llilDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 152 IARAL--MMEPQVLLFDEPTAALDPEITAQ-IVSIIRELAET-GITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred HHHHH--hcCCCEEEEcCCCCcCCHHHHHH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEE
Confidence 66666 88999999999999999765443 44566666554 889999999999988777654
No 143
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.62 E-value=2.6e-15 Score=165.06 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=105.9
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++|++.-| ++..+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 2 RFSDVTKRF-----GILTVLDGLNFSVA----AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred EEEEEEEEe-----CCeeEEeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccc
Confidence 567777766 34579999999998 899999999999999999999977531
Q ss_pred -------------Hhhcccccccccc---ccchHHH----------------------HHHHcCCcccccc---ccchhh
Q 040956 851 -------------LAQLGCFVPCEMC---VLSLADT----------------------IFTRLGATDRIMT---GESTFL 889 (1085)
Q Consensus 851 -------------laqiG~~VPa~~a---~i~~~d~----------------------I~trig~~D~i~~---~~Stf~ 889 (1085)
..++| |+|+... ..++.+. ++.++|..+.... .+|..+
T Consensus 73 ~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIG-MVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQ 151 (252)
T ss_pred cccccchhHHHHHhhCeE-EEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHH
Confidence 01233 5555421 1222222 3344454333222 344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....++++| +.+|+++|||||++|.|+..... ...++..+.++.+.++|++||+++.+..++++..
T Consensus 152 ~qrv~laral--~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T TIGR03005 152 QQRVAIARAL--AMRPKVMLFDEVTSALDPELVGE-VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218 (252)
T ss_pred HHHHHHHHHH--HcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 4445566667 89999999999999999766444 4455666655447899999999999877776543
No 144
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.5e-15 Score=160.88 Aligned_cols=158 Identities=21% Similarity=0.304 Sum_probs=121.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
.+|+++|+...|. +++.+++||+|.++ +|++++|+||+|+|||||||++.+++
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~----~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEIN----QGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeC----CCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccch
Confidence 4789999988884 57899999999998 89999999999999999999996543
Q ss_pred -----HHhhccccccccccc---cchHH-----------------------------HHHHHcCCccccccccchhhHH-
Q 040956 850 -----ILAQLGCFVPCEMCV---LSLAD-----------------------------TIFTRLGATDRIMTGESTFLVE- 891 (1085)
Q Consensus 850 -----ilaqiG~~VPa~~a~---i~~~d-----------------------------~I~trig~~D~i~~~~Stf~~E- 891 (1085)
+.+++| ++.+...- ++++. ..++|+|..|......++.+++
T Consensus 74 k~lr~~r~~iG-mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ 152 (258)
T COG3638 74 KELRKLRRDIG-MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ 152 (258)
T ss_pred HHHHHHHHhce-eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence 456777 55443311 11111 1467788877777666666655
Q ss_pred --hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 892 --CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 892 --m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
...+|++| +.++.++|.|||.+++||..... ....+..+.++.|.|+|+.-|+.+++..++++.
T Consensus 153 QQRVaIARaL--~Q~pkiILADEPvasLDp~~a~~-Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Ri 218 (258)
T COG3638 153 QQRVAIARAL--VQQPKIILADEPVASLDPESAKK-VMDILKDINQEDGITVIVNLHQVDLAKKYADRI 218 (258)
T ss_pred hHHHHHHHHH--hcCCCEEecCCcccccChhhHHH-HHHHHHHHHHHcCCEEEEEechHHHHHHHHhhh
Confidence 34588888 99999999999999999887544 334566666777999999999999999999763
No 145
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.62 E-value=4e-15 Score=170.12 Aligned_cols=166 Identities=19% Similarity=0.168 Sum_probs=115.3
Q ss_pred CCEEEEEcceeeeeecCC--------CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------
Q 040956 788 GPVLKIKGLWHPFALGEN--------GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------- 850 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~--------~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------- 850 (1085)
.++|+++|+...|-.... +...+.+|++|++. +|++++|+|+||||||||+|+|+++.-
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~----~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~ 81 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLY----EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEc----CCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence 478999999998832100 12468999999998 799999999999999999999976430
Q ss_pred ---------------Hhhcccccccccc-----ccchHHH-----------------------HHHHcCCcc-ccc---c
Q 040956 851 ---------------LAQLGCFVPCEMC-----VLSLADT-----------------------IFTRLGATD-RIM---T 883 (1085)
Q Consensus 851 ---------------laqiG~~VPa~~a-----~i~~~d~-----------------------I~trig~~D-~i~---~ 883 (1085)
..++| ||+++.. .+++.+. ++.++|..+ ... .
T Consensus 82 G~~i~~~~~~~~~~~r~~i~-~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~ 160 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQ-MIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160 (331)
T ss_pred CEECCcCCHHHHHHHhCceE-EEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcc
Confidence 12344 6776531 1223332 233445422 122 2
Q ss_pred ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 884 GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 884 ~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
.+|..+.....+|++| +.+|+|||+|||++|+|......+ ..++..+.++.+.++||+|||++++..++++..|.
T Consensus 161 ~LSgG~~QRv~iArAL--~~~P~llilDEPts~LD~~~~~~i-~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 161 EFSGGQCQRIGIARAL--ILEPKLIICDEPVSALDVSIQAQV-VNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 3444444444577777 899999999999999997765544 44666666655899999999999999888875544
No 146
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.62 E-value=2.3e-15 Score=162.40 Aligned_cols=154 Identities=22% Similarity=0.208 Sum_probs=106.7
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------hhc
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-----------------AQL 854 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-----------------aqi 854 (1085)
+++++.+.| ++..+.++++|.+. +|++++|+||||+||||||++++++.-. ..+
T Consensus 2 ~l~~v~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 2 ETKNLSKRF-----GKQTAVNNISLTVP----KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred EEEeEEEEE-----CCEEEEeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccE
Confidence 567777766 24578999999987 7999999999999999999999875310 123
Q ss_pred ccccccccc---ccchHHH-----------------HHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEe
Q 040956 855 GCFVPCEMC---VLSLADT-----------------IFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLVILD 911 (1085)
Q Consensus 855 G~~VPa~~a---~i~~~d~-----------------I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLD 911 (1085)
| |+|+... ..++.+. ++.++|..+.... .+|..+.....+++++ +.+|+++|||
T Consensus 73 ~-~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral--~~~p~llllD 149 (223)
T TIGR03740 73 G-SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL--LNHPKLLILD 149 (223)
T ss_pred E-EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHH--hcCCCEEEEC
Confidence 3 5555421 1233333 3344554433322 3444444444566666 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
||++|.|+..... .+.++..+.++ +.++|++||+.+++..++++..
T Consensus 150 EP~~~LD~~~~~~-l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 195 (223)
T TIGR03740 150 EPTNGLDPIGIQE-LRELIRSFPEQ-GITVILSSHILSEVQQLADHIG 195 (223)
T ss_pred CCccCCCHHHHHH-HHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEE
Confidence 9999999776544 45566666554 7899999999999988887643
No 147
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=4.1e-15 Score=166.83 Aligned_cols=158 Identities=19% Similarity=0.163 Sum_probs=108.3
Q ss_pred CCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------
Q 040956 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------- 850 (1085)
Q Consensus 787 ~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------- 850 (1085)
++++|.++++.+.| ++..+.+|++|.+. +|++++|+||||+|||||||+|+++.-
T Consensus 36 ~~~~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~ 106 (286)
T PRK14275 36 GKPHVVAKNFSIYY-----GEFEAVKKVNADIL----SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106 (286)
T ss_pred CceEEEEeeeEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence 45789999999888 34569999999998 799999999999999999999988521
Q ss_pred ------------Hhhcccccccccccc--chHHH----------------------HHHHcCCc----ccc---ccccch
Q 040956 851 ------------LAQLGCFVPCEMCVL--SLADT----------------------IFTRLGAT----DRI---MTGEST 887 (1085)
Q Consensus 851 ------------laqiG~~VPa~~a~i--~~~d~----------------------I~trig~~----D~i---~~~~St 887 (1085)
...+| |+|++...+ ++.+. ++..+|.. +.. ...+|.
T Consensus 107 ~i~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 185 (286)
T PRK14275 107 DIYGKFTDEVLLRKKIG-MVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG 185 (286)
T ss_pred EhhhcccchHHhhhcEE-EECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCH
Confidence 01233 566543211 22222 22233321 111 223444
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 888 f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.+.....++++| +.+|+++|||||++|.|+..... ...++..+.. +.++|++||+++++..++++..
T Consensus 186 Gq~qrv~LAraL--~~~p~lllLDEPt~gLD~~~~~~-l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~ 252 (286)
T PRK14275 186 GQQQRLCVARTL--AVEPEILLLDEPTSALDPKATAK-IEDLIQELRG--SYTIMIVTHNMQQASRVSDYTM 252 (286)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEE
Confidence 444444566666 89999999999999999766544 4445555543 5789999999999988877543
No 148
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.62 E-value=3.3e-15 Score=163.00 Aligned_cols=156 Identities=23% Similarity=0.186 Sum_probs=106.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-HH------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-IL------------------ 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-il------------------ 851 (1085)
|+++++...| ++..+++|++|.+. +|++++|+||||||||||||+|+++. +-
T Consensus 1 l~~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSV-----EDKEILKGVNLTVK----KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEE-----CCEEEEeccceEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH
Confidence 3567777777 34578999999998 79999999999999999999998862 00
Q ss_pred ---hhcc-cccccccccc---ch----------------------------HHHHHHHcCCcccc----cc-ccchhhHH
Q 040956 852 ---AQLG-CFVPCEMCVL---SL----------------------------ADTIFTRLGATDRI----MT-GESTFLVE 891 (1085)
Q Consensus 852 ---aqiG-~~VPa~~a~i---~~----------------------------~d~I~trig~~D~i----~~-~~Stf~~E 891 (1085)
...+ .|+|+..... +. ++.++.++|..+.. .. .+|..+..
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHH
Confidence 1111 2566543110 11 12233445554221 12 25555555
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh-cCccc
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF-ASHPH 959 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~-~~~~~ 959 (1085)
...++++| +.+|+++|||||++|.|+..... ...++..+.++ +.++|++||+.+++..+ +++..
T Consensus 152 rl~la~al--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 152 RNEILQMA--LLEPKLAILDEIDSGLDIDALKI-VAEGINRLREP-DRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred HHHHHHHH--hcCCCEEEecCCcccCCHHHHHH-HHHHHHHHHHC-CcEEEEEEecHHHHHhhcCCeEE
Confidence 55577777 89999999999999999776554 44555666553 78999999999999876 66543
No 149
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=2.5e-15 Score=167.21 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=109.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+.+.|- .++..++++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 6 ~~l~~~nl~~~~~---~~~~~il~~isl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYP---NSENNALKNVSFEIN----EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcC---CCCccceeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCH
Confidence 6899999998872 123579999999998 799999999999999999999987531
Q ss_pred ---Hhhcccccccccc----ccchHHH---------------------HHHHcCCccccc---cccchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMC----VLSLADT---------------------IFTRLGATDRIM---TGESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~a----~i~~~d~---------------------I~trig~~D~i~---~~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+... ..++.+. ++.++|..+.+. ..+|..+.....++++|
T Consensus 79 ~~~~~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 79 KEIRKKIG-IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred HHHhcceE-EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 11244 6776531 1233332 233444433222 33444444445567777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+|+|||||++|.|+.... ....++..+.++.+.++|++||+.+.+. .+++.
T Consensus 158 --~~~p~lllLDEP~~gLD~~~~~-~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v 212 (271)
T PRK13632 158 --ALNPEIIIFDESTSMLDPKGKR-EIKKIMVDLRKTRKKTLISITHDMDEAI-LADKV 212 (271)
T ss_pred --HcCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEE
Confidence 8999999999999999976644 3445666665543589999999998875 45543
No 150
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=165.51 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=108.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++++...| ++..+++|++|++. +|++++|+||||+|||||||+++++.-.
T Consensus 12 ~~l~i~nl~~~~-----~~~~il~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i 82 (269)
T PRK14259 12 IIISLQNVTISY-----GTFEAVKNVFCDIP----RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDL 82 (269)
T ss_pred ceEEEEeEEEEE-----CCEEEEcceEEEEc----CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 579999999888 34579999999998 7999999999999999999999876310
Q ss_pred -----------hhcccccccccccc--chHHHH--------------------HHHcCCc-------cccccccchhhHH
Q 040956 852 -----------AQLGCFVPCEMCVL--SLADTI--------------------FTRLGAT-------DRIMTGESTFLVE 891 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~i--~~~d~I--------------------~trig~~-------D~i~~~~Stf~~E 891 (1085)
..+| |+|+....+ ++.+.+ +..++.. +.....+|..+..
T Consensus 83 ~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 83 YDPRVDPVEVRRRIG-MVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred ccccCCHHHHhhceE-EEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHH
Confidence 1233 666543211 222222 2222221 1112234444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
...++++| +.+|+++|||||++|+|+.....+ ..++..+. + +.++|++||+.+++..++++..+.
T Consensus 162 rl~laral--~~~p~lllLDEPt~gLD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 226 (269)
T PRK14259 162 RLCIARTI--AIEPEVILMDEPCSALDPISTLKI-EETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFF 226 (269)
T ss_pred HHHHHHHH--hcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 44566666 899999999999999998765544 44555553 3 679999999999998888765443
No 151
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=5.4e-15 Score=164.18 Aligned_cols=157 Identities=21% Similarity=0.198 Sum_probs=107.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-H----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-L---------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-l---------------- 851 (1085)
++|+++|+++.| ++..++++++|++. +|++++|+||||+|||||||+++++.- .
T Consensus 20 ~~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 20 HILEVKDLSIYY-----GEKRAVNDISMDIE----KHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred ceEEEEEEEEEe-----CCceeeeceEEEEc----CCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 689999999888 34679999999998 799999999999999999999987531 0
Q ss_pred -----------hhccccccccccc--cchHHHHH----------------------HHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADTIF----------------------TRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~I~----------------------trig~~-------D~i~~~~Stf~ 889 (1085)
..+| |+|+.... .++.+.+. ..++.. +.....+|..+
T Consensus 91 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 169 (268)
T PRK14248 91 LDSNINVVNLRREIG-MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQ 169 (268)
T ss_pred ccccccHHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHH
Confidence 1133 55554321 12333221 222221 11122244444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|.++|||||++|.|+.....+ ..++..+.+ +.|+|++||+.+.+..++++..+
T Consensus 170 ~qrl~laral--~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~ 235 (268)
T PRK14248 170 QQRLCIARTL--AMKPAVLLLDEPASALDPISNAKI-EELITELKE--EYSIIIVTHNMQQALRVSDRTAF 235 (268)
T ss_pred HHHHHHHHHH--hCCCCEEEEcCCCcccCHHHHHHH-HHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEE
Confidence 4444567777 899999999999999997765544 456666643 57999999999988887775433
No 152
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=4.2e-15 Score=163.26 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=108.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--H----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--I---------------- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--i---------------- 850 (1085)
+.|+++++...| +...+++|++|++. +|++++|+||||+|||||||+++++. +
T Consensus 2 ~~l~~~~~~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14245 2 VKIDARDVNFWY-----GDFHALKGISMEIE----EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72 (250)
T ss_pred cEEEEEEEEEEE-----CCEeEEeeeeEEEe----CCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEec
Confidence 578999999887 34579999999998 79999999999999999999997641 0
Q ss_pred ----------Hhhccccccccccc--cchHHH----------------------HHHHcCCcc-------ccccccchhh
Q 040956 851 ----------LAQLGCFVPCEMCV--LSLADT----------------------IFTRLGATD-------RIMTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a~--i~~~d~----------------------I~trig~~D-------~i~~~~Stf~ 889 (1085)
..++| |+|+.... .++.+. ++..+|..+ .....+|..+
T Consensus 73 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 73 YDKGVQVDELRKNVG-MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccccccHHHHhhheE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 01233 56654211 122222 233344322 1122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|+++|||||++|+|+..... ...++..+. + ++++|++||+.+.+..++++..+
T Consensus 152 ~qrv~laral--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 152 QQRLCIARAM--AVSPSVLLMDEPASALDPISTAK-VEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEE
Confidence 4455577777 89999999999999999776554 445555553 3 68999999999998887776433
No 153
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=4.2e-15 Score=166.91 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=110.7
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++.+-|-........+++|++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~----~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVK----KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEc----CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 67888888873111011369999999998 799999999999999999999976531
Q ss_pred -----Hhhccccccccc----cccchHH---------------------HHHHHcCCcc----ccccccchhhHHhHHHH
Q 040956 851 -----LAQLGCFVPCEM----CVLSLAD---------------------TIFTRLGATD----RIMTGESTFLVECTETA 896 (1085)
Q Consensus 851 -----laqiG~~VPa~~----a~i~~~d---------------------~I~trig~~D----~i~~~~Stf~~Em~ela 896 (1085)
...+| ||++.. ...++.+ .++..+|..+ .....+|..+.....+|
T Consensus 78 ~~~~~~~~ig-~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 78 EIKPVRKKVG-VVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred cHHHHHhhEE-EEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 12344 666642 1112222 2334445432 22233455554455577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
++| +.+|+++|||||++|.|+..... ...++..+.++ |.|+|++||+++++..++++..+
T Consensus 157 ~aL--~~~p~illLDEPt~gLD~~~~~~-l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~ 216 (288)
T PRK13643 157 GIL--AMEPEVLVLDEPTAGLDPKARIE-MMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYL 216 (288)
T ss_pred HHH--HhCCCEEEEECCccCCCHHHHHH-HHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 777 89999999999999999776544 44566777654 88999999999999888876533
No 154
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=2.7e-15 Score=160.47 Aligned_cols=151 Identities=20% Similarity=0.270 Sum_probs=104.3
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------H
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------L 851 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------l 851 (1085)
+++++.+.| ++..+.++++|++. +| +++|+||||+|||||||+++++.- .
T Consensus 2 ~~~~~~~~~-----~~~~~l~~vs~~i~----~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 2 QLENLTKRY-----GKKRALDGVSLTLG----PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred EEEEEEEEE-----CCEEEEcceeEEEc----CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHH
Confidence 567777766 34579999999997 68 999999999999999999987531 1
Q ss_pred hhccccccccccc---cchHH---------------------HHHHHcCCcccc---ccccchhhHHhHHHHHHHHhCCC
Q 040956 852 AQLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRI---MTGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 852 aqiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i---~~~~Stf~~Em~ela~iL~~at~ 904 (1085)
.++| |+|++... .++.+ .++..+|..+.. ...+|..+.....++++| +.+
T Consensus 72 ~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~ 148 (211)
T cd03264 72 RRIG-YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQAL--VGD 148 (211)
T ss_pred hheE-EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHH--hcC
Confidence 2344 66664321 12222 233444543322 233455555455577777 899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|+++|||||++|.|...... ...++..+.+ +.++|++||+.+++..++++.
T Consensus 149 p~llllDEPt~~LD~~~~~~-l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIR-FRNLLSELGE--DRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred CCEEEEcCCcccCCHHHHHH-HHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEE
Confidence 99999999999999766443 4556666653 589999999999988777654
No 155
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=4.6e-15 Score=163.31 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=108.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++++++.| ++..+.++++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (254)
T PRK14273 6 AIIETENLNLFY-----TDFKALNNINIKIL----KNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI 76 (254)
T ss_pred ceEEEeeeEEEe-----CCceeecceeeEEc----CCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEec
Confidence 579999999988 34579999999998 7999999999999999999999875321
Q ss_pred -----------hhcccccccccc--ccchHHHHH----------------------HHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMC--VLSLADTIF----------------------TRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a--~i~~~d~I~----------------------trig~~-------D~i~~~~Stf~ 889 (1085)
.++| |+|++.. ..++.+.|. ..++.. +.....+|..+
T Consensus 77 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 77 YSNNFDILELRRKIG-MVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred ccccccHHHHhhceE-EEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHH
Confidence 1123 5555421 123333331 122221 11122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|+|+|||||++|+|......+ ..++..+. + ++++|++||+.+++..++++..+
T Consensus 156 ~qrv~laral--~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~ 221 (254)
T PRK14273 156 QQRLCIARTL--AIEPNVILMDEPTSALDPISTGKI-EELIINLK-E-SYTIIIVTHNMQQAGRISDRTAF 221 (254)
T ss_pred HHHHHHHHHH--HcCCCEEEEeCCCcccCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4444567777 899999999999999997765544 44555664 3 68999999999998888876433
No 156
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.62 E-value=2.8e-15 Score=159.32 Aligned_cols=149 Identities=18% Similarity=0.133 Sum_probs=103.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------H
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------I 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------i 850 (1085)
|.+++++..| ++..++++++|++. +|++++|+||||+|||||||+|++.. +
T Consensus 2 l~~~~l~~~~-----~~~~il~~~s~~i~----~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDY-----HDQPLLQQISFHLP----AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEe-----CCeeEEeeeeEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHH
Confidence 6788888777 34579999999998 79999999999999999999997643 1
Q ss_pred Hhhcccccccccc---ccchHHH----------------HHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEE
Q 040956 851 LAQLGCFVPCEMC---VLSLADT----------------IFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSLV 908 (1085)
Q Consensus 851 laqiG~~VPa~~a---~i~~~d~----------------I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLv 908 (1085)
..++| |+|+... ..++.+. ++..++..+... ..+|..+.....+++++ +.+|+++
T Consensus 73 ~~~i~-~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral--~~~p~~l 149 (200)
T PRK13540 73 QKQLC-FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLW--MSKAKLW 149 (200)
T ss_pred HhheE-EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHH--hcCCCEE
Confidence 23455 5665321 1233332 334444433222 23444444455566666 8999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
|||||++|.|...... ...++..+.+. ++++|++||+.+++..
T Consensus 150 ilDEP~~~LD~~~~~~-l~~~l~~~~~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 150 LLDEPLVALDELSLLT-IITKIQEHRAK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred EEeCCCcccCHHHHHH-HHHHHHHHHHc-CCEEEEEeCCchhccc
Confidence 9999999999766544 44455555544 8899999999988765
No 157
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.7e-15 Score=166.62 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=111.4
Q ss_pred CEEEEEcceeeeeecCC-CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGEN-GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~-~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------- 850 (1085)
++|+++++...|-.... +...++++++|++. +|++++|+||||+|||||||+++++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVK----KGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 57899999988831100 12479999999998 799999999999999999999976531
Q ss_pred -----Hhhcccccccccc----ccchH---------------------HHHHHHcCCccccc---cccchhhHHhHHHHH
Q 040956 851 -----LAQLGCFVPCEMC----VLSLA---------------------DTIFTRLGATDRIM---TGESTFLVECTETAS 897 (1085)
Q Consensus 851 -----laqiG~~VPa~~a----~i~~~---------------------d~I~trig~~D~i~---~~~Stf~~Em~ela~ 897 (1085)
..++| |+|+... ...+. +.++.++|..+... ..+|..+.....+++
T Consensus 79 ~~~~~~~~i~-~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar 157 (280)
T PRK13633 79 NLWDIRNKAG-MVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAG 157 (280)
T ss_pred cHHHHhhheE-EEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 11244 6666431 01111 22344555544333 344554544555777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+| +.+|+|+|||||++|+|+.....+ ..++..+.++.|+++|++||+++.+.. +++.
T Consensus 158 al--~~~p~llllDEPt~gLD~~~~~~l-~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v 214 (280)
T PRK13633 158 IL--AMRPECIIFDEPTAMLDPSGRREV-VNTIKELNKKYGITIILITHYMEEAVE-ADRI 214 (280)
T ss_pred HH--HcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecChHHHhc-CCEE
Confidence 77 899999999999999998776554 456666655458899999999998865 5543
No 158
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.61 E-value=3.1e-15 Score=180.66 Aligned_cols=159 Identities=21% Similarity=0.265 Sum_probs=115.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++|+.+.| ++..+++|++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 10 ~~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 10 PLLCARSISKQY-----SGVEVLKGIDFTLH----AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP 80 (510)
T ss_pred ceEEEEeEEEEe-----CCceeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 579999999988 34679999999998 7999999999999999999999775310
Q ss_pred -----hhcccccccccc---ccchHH-----------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCC
Q 040956 852 -----AQLGCFVPCEMC---VLSLAD-----------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 852 -----aqiG~~VPa~~a---~i~~~d-----------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at 903 (1085)
..+| |||++.. .+++.+ .++..+|..+.... .+|..+.....+|++| +.
T Consensus 81 ~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL--~~ 157 (510)
T PRK15439 81 AKAHQLGIY-LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL--MR 157 (510)
T ss_pred HHHHhCCEE-EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH--Hc
Confidence 1234 6776532 112222 24455665543333 3444444445577777 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|+++|||||++|.|+..... ...++..+.++ |.++|++||+.+++..++++..+.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 158 DSRILILDEPTASLTPAETER-LFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999776554 44566666655 889999999999998888765443
No 159
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.61 E-value=3.8e-15 Score=163.76 Aligned_cols=157 Identities=24% Similarity=0.261 Sum_probs=108.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------H
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-----------------L 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-----------------l 851 (1085)
+.|+++++...| ++..+++|++|++. +|++++|+||||+|||||||+++++.- +
T Consensus 2 ~~l~~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 2 PLLQVSGLSKSY-----GGGKGCRDVSFDLY----PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELEL 72 (253)
T ss_pred ceEEEeeeEEEe-----CCceEeecceEEEe----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccccccccc
Confidence 578999999988 34568999999998 799999999999999999999976530 0
Q ss_pred -------------hhcccccccccc-----ccchH----------------------HHHHHHcCCcc-cccc---ccch
Q 040956 852 -------------AQLGCFVPCEMC-----VLSLA----------------------DTIFTRLGATD-RIMT---GEST 887 (1085)
Q Consensus 852 -------------aqiG~~VPa~~a-----~i~~~----------------------d~I~trig~~D-~i~~---~~St 887 (1085)
..+| |+|+... ..+.. +.++..+|..+ .... .+|.
T Consensus 73 ~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg 151 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWG-FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG 151 (253)
T ss_pred ccCCHHHHHHhhhcceE-EEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH
Confidence 0133 5565421 11111 12334455432 2222 3444
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 888 f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.+.....+|++| +.+|+++|||||++|.|+.....+ ..++..+.++.+.++|++||+.+++..++++.
T Consensus 152 G~~qrv~laral--~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~ 219 (253)
T TIGR02323 152 GMQQRLQIARNL--VTRPRLVFMDEPTGGLDVSVQARL-LDLLRGLVRDLGLAVIIVTHDLGVARLLAQRL 219 (253)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 444444577777 899999999999999997775544 44555555444789999999999998877654
No 160
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.4e-15 Score=166.46 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=106.0
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...|- +...+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYP----DGTPALENINLVIK----KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcC----CCCceeeeeEEEEe----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHH
Confidence 67788887762 23469999999998 799999999999999999999976531
Q ss_pred --Hhhcccccccccc----ccchHHH---------------------HHHHcCCccccc---cccchhhHHhHHHHHHHH
Q 040956 851 --LAQLGCFVPCEMC----VLSLADT---------------------IFTRLGATDRIM---TGESTFLVECTETASVLQ 900 (1085)
Q Consensus 851 --laqiG~~VPa~~a----~i~~~d~---------------------I~trig~~D~i~---~~~Stf~~Em~ela~iL~ 900 (1085)
...+| |+|+... ..++.+. +...+|..+... ..+|..+.....++++|
T Consensus 74 ~~~~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral- 151 (274)
T PRK13644 74 GIRKLVG-IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL- 151 (274)
T ss_pred HHHhheE-EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH-
Confidence 11244 6666421 1223222 233445433222 33444444444567777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+|+|||||++|.|+.... ..+.++..+.++ |.|+|++||+.+.+. .+++.
T Consensus 152 -~~~p~lllLDEPt~gLD~~~~~-~l~~~l~~l~~~-g~til~~tH~~~~~~-~~d~v 205 (274)
T PRK13644 152 -TMEPECLIFDEVTSMLDPDSGI-AVLERIKKLHEK-GKTIVYITHNLEELH-DADRI 205 (274)
T ss_pred -HcCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCHHHHh-hCCEE
Confidence 8999999999999999976644 445566666654 899999999999885 46654
No 161
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=5.2e-15 Score=163.43 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=108.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++|+.+.| +...+++|++|.+. +|++++|+||||+|||||||+|+++.-.
T Consensus 11 ~~l~i~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 11 EVYQINGMNLWY-----GQHHALKNINLSIP----ENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred ceEEEeeEEEEE-----CCeeeEEeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEc
Confidence 679999999887 34579999999998 7999999999999999999999875320
Q ss_pred -----------hhccccccccccc--cchHHH----------------------HHHHcCCcc-------ccccccchhh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADT----------------------IFTRLGATD-------RIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~----------------------I~trig~~D-------~i~~~~Stf~ 889 (1085)
.++| |+|+.... .++.+. ++..++..+ .....+|..+
T Consensus 82 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq 160 (259)
T PRK14274 82 LKGKVDLVELRKNIG-MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQ 160 (259)
T ss_pred cccccCHHHHhhceE-EEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 1123 55554211 122222 222333321 1122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|+|+|||||++|.|+.....+ ..++..+. + +.++|++||+.+.+..++++..+
T Consensus 161 ~qrv~laral--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~ 226 (259)
T PRK14274 161 QQRLCIARAL--ATNPDVLLMDEPTSALDPVSTRKI-EELILKLK-E-KYTIVIVTHNMQQAARVSDQTAF 226 (259)
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEE
Confidence 4445567777 899999999999999997765544 45566664 3 68999999999998888776433
No 162
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.61 E-value=2.3e-15 Score=160.23 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=101.8
Q ss_pred EEEcceeeeeecCCCC----cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------hhcccccc
Q 040956 792 KIKGLWHPFALGENGG----LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------AQLGCFVP 859 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~----~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------aqiG~~VP 859 (1085)
+++|+...|- +. ..++++++|.+. +|++++|+||||+|||||||+++++.-. .++| |+|
T Consensus 2 ~~~~l~~~~~----~~~~~~~~il~~~s~~i~----~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~-~~~ 72 (204)
T cd03250 2 SVEDASFTWD----SGEQETSFTLKDINLEVP----KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA-YVS 72 (204)
T ss_pred EEeEEEEecC----CCCccccceeeeeeEEEC----CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEE-EEe
Confidence 4666666651 11 369999999998 7999999999999999999999886421 1233 666
Q ss_pred cccc--ccchHHHH--------------HHHcCCcc--------------ccccccchhhHHhHHHHHHHHhCCCCcEEE
Q 040956 860 CEMC--VLSLADTI--------------FTRLGATD--------------RIMTGESTFLVECTETASVLQKATQDSLVI 909 (1085)
Q Consensus 860 a~~a--~i~~~d~I--------------~trig~~D--------------~i~~~~Stf~~Em~ela~iL~~at~~sLvL 909 (1085)
+... ..++.+.+ ...++..+ .....+|..+.....++++| +.+|+++|
T Consensus 73 q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral--~~~p~lll 150 (204)
T cd03250 73 QEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV--YSDADIYL 150 (204)
T ss_pred cCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH--hcCCCEEE
Confidence 6531 11222222 11122211 11234555555555577777 89999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 910 LDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|||++|+|+.....+...++..+.++ +.++|++||+++.+.. +++
T Consensus 151 lDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~ 196 (204)
T cd03250 151 LDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQ 196 (204)
T ss_pred EeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCE
Confidence 999999999766555544455544444 7899999999998876 554
No 163
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=4.2e-15 Score=161.51 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=107.5
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------h
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------------------A 852 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------------------a 852 (1085)
.++++...| ++..+.++++|++. +|++++|+||||+||||||+++++..-. .
T Consensus 2 ~~~~l~~~~-----~~~~il~~i~~~i~----~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 2 ELENVSKFY-----GGFVALDGVSLDIK----EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKR 72 (232)
T ss_pred EEEeEEEEe-----CCeeeeccceEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhc
Confidence 567777766 34579999999998 7999999999999999999999775311 1
Q ss_pred hccccccccccc---cchH---------------------HHHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMCV---LSLA---------------------DTIFTRLGATDRIM---TGESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a~---i~~~---------------------d~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~ 905 (1085)
.+| |+|++... .++. +.++.++|..+.+. ...|..+.....++++| +.+|
T Consensus 73 ~i~-~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral--~~~p 149 (232)
T cd03300 73 PVN-TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL--VNEP 149 (232)
T ss_pred ceE-EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH--hcCC
Confidence 233 55554311 1222 22344556543333 33444444445567777 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+++|||||+.|+|...... .+.++..+.++.++|+|++||+.+++..++++.
T Consensus 150 ~llllDEP~~gLD~~~~~~-l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i 201 (232)
T cd03300 150 KVLLLDEPLGALDLKLRKD-MQLELKRLQKELGITFVFVTHDQEEALTMSDRI 201 (232)
T ss_pred CEEEEcCCcccCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 9999999999999766544 455666666544889999999999988777754
No 164
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=3.5e-15 Score=159.44 Aligned_cols=150 Identities=20% Similarity=0.148 Sum_probs=103.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------H
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------L 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------l 851 (1085)
+|+++++...| ++..++++++|.+. +|++++|+||||+|||||+++++++.. .
T Consensus 2 ~l~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 72 (207)
T PRK13539 2 MLEGEDLACVR-----GGRVLFSGLSFTLA----AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72 (207)
T ss_pred EEEEEeEEEEE-----CCeEEEeceEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhH
Confidence 47888888777 34579999999998 799999999999999999999977531 1
Q ss_pred hhcccccccccc---ccchHH-----------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEE
Q 040956 852 AQLGCFVPCEMC---VLSLAD-----------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLV 908 (1085)
Q Consensus 852 aqiG~~VPa~~a---~i~~~d-----------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLv 908 (1085)
.++| |+|.... ..++.+ .++..+|..+.... .+|..+.....+++++ +.+|+|+
T Consensus 73 ~~~~-~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al--~~~p~ll 149 (207)
T PRK13539 73 EACH-YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLL--VSNRPIW 149 (207)
T ss_pred hhcE-EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHH--hcCCCEE
Confidence 1233 5554321 122222 23444554432222 3344444444466666 8999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
|||||+.|.|+.....+ ..++..+.++ +.++|++||+.+.+..
T Consensus 150 llDEPt~~LD~~~~~~l-~~~l~~~~~~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 150 ILDEPTAALDAAAVALF-AELIRAHLAQ-GGIVIAATHIPLGLPG 192 (207)
T ss_pred EEeCCcccCCHHHHHHH-HHHHHHHHHC-CCEEEEEeCCchhhcc
Confidence 99999999997765544 4566666555 8899999999988775
No 165
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.61 E-value=2.1e-15 Score=152.37 Aligned_cols=136 Identities=19% Similarity=0.150 Sum_probs=93.3
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHH
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTI 871 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I 871 (1085)
++++++..| ++..+.++++|... +|++++|+||||+|||||++++++..- ..-|...-.....+.++
T Consensus 2 ~~~~l~~~~-----~~~~~l~~~~~~~~----~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~--- 68 (144)
T cd03221 2 ELENLSKTY-----GGKLLLKDISLTIN----PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYF--- 68 (144)
T ss_pred EEEEEEEEE-----CCceEEEeeEEEEC----CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEE---
Confidence 456666655 23468899999987 799999999999999999999987532 12221100000011111
Q ss_pred HHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 872 ~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
..+|..+.....+++++ +.+|+++|+|||++|.|......+ ..++.. .++++|++||+.+.+
T Consensus 69 -----------~~lS~G~~~rv~laral--~~~p~illlDEP~~~LD~~~~~~l-~~~l~~----~~~til~~th~~~~~ 130 (144)
T cd03221 69 -----------EQLSGGEKMRLALAKLL--LENPNLLLLDEPTNHLDLESIEAL-EEALKE----YPGTVILVSHDRYFL 130 (144)
T ss_pred -----------ccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCHHHHHHH-HHHHHH----cCCEEEEEECCHHHH
Confidence 11666666666778888 899999999999999997654332 223332 367999999999998
Q ss_pred HhhcCcc
Q 040956 952 KEFASHP 958 (1085)
Q Consensus 952 ~~~~~~~ 958 (1085)
..++++.
T Consensus 131 ~~~~d~v 137 (144)
T cd03221 131 DQVATKI 137 (144)
T ss_pred HHhCCEE
Confidence 8777653
No 166
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.61 E-value=2.8e-15 Score=165.24 Aligned_cols=155 Identities=23% Similarity=0.225 Sum_probs=108.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+++.| ++..+++|++|.+. +|++++|+||||+|||||||+|+++.-
T Consensus 2 l~~~~l~~~~-----~~~~il~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSA-----GGRLIVDGVDVTAP----PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEE-----CCEEEEeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHH
Confidence 5788888877 34679999999998 799999999999999999999977531
Q ss_pred -Hhhcccccccccc---ccchHHH-------------------------HHHHcCCcccc---ccccchhhHHhHHHHHH
Q 040956 851 -LAQLGCFVPCEMC---VLSLADT-------------------------IFTRLGATDRI---MTGESTFLVECTETASV 898 (1085)
Q Consensus 851 -laqiG~~VPa~~a---~i~~~d~-------------------------I~trig~~D~i---~~~~Stf~~Em~ela~i 898 (1085)
...+| |+|++.. ..++.+. ++.++|..+.. ...+|..+.....++++
T Consensus 73 ~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 73 RARRVA-LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred HhhheE-EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 11244 6666531 1222222 23334433222 22344555555557777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+ +.+|+++|||||++|.|+..... ...++..+.++ +.++|++||+++.+..++++..
T Consensus 152 l--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 208 (256)
T TIGR03873 152 L--AQEPKLLLLDEPTNHLDVRAQLE-TLALVRELAAT-GVTVVAALHDLNLAASYCDHVV 208 (256)
T ss_pred H--hcCCCEEEEcCccccCCHHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 7 89999999999999999766444 45566666654 7899999999999988887543
No 167
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=3.7e-15 Score=157.93 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=121.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++++++++.-.| |...|+.+++|.+. .|++++|+||||+|||||||+|++++-
T Consensus 2 ~mL~v~~l~~~Y-----G~~~~L~gvsl~v~----~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 2 PMLEVENLSAGY-----GKIQALRGVSLEVE----RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CceeEEeEeecc-----cceeEEeeeeeEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH
Confidence 578999988777 66789999999998 899999999999999999999987651
Q ss_pred --Hhhcc-cccccccc---ccch--------------------HHHHHHHcC----CccccccccchhhHHhHHHHHHHH
Q 040956 851 --LAQLG-CFVPCEMC---VLSL--------------------ADTIFTRLG----ATDRIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 851 --laqiG-~~VPa~~a---~i~~--------------------~d~I~trig----~~D~i~~~~Stf~~Em~ela~iL~ 900 (1085)
.+..| +|||+... .+++ .|.+|+.+- -.+.....+|.....|..++++|
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL- 151 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL- 151 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH-
Confidence 12222 37776431 1111 344544433 12223345666677788899999
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+++|.|++||||+.|++|.=...|. .++..|.++.+.|||++.++...+..++++..|.
T Consensus 152 -m~~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 152 -MSRPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEGGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred -hcCCCEEEecCCccCcCHHHHHHHH-HHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEE
Confidence 9999999999999999998765554 4666777665789999999999999999886554
No 168
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.61 E-value=5.4e-15 Score=163.23 Aligned_cols=158 Identities=24% Similarity=0.249 Sum_probs=110.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------H
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-----------------L 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-----------------l 851 (1085)
++|+++++..-| ++..+++|++|++. +|++++|+||||+|||||||+++++.- +
T Consensus 5 ~~l~~~~l~~~~-----~~~~il~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 5 PLLSVRGLTKLY-----GPRKGCRDVSFDLY----PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred ceEEEeeeEEEc-----CCceeeeeeeEEEe----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcccccccc
Confidence 578999998877 34579999999998 799999999999999999999976530 1
Q ss_pred h-------------hcccccccccc-----ccchH----------------------HHHHHHcCCcc-ccc---cccch
Q 040956 852 A-------------QLGCFVPCEMC-----VLSLA----------------------DTIFTRLGATD-RIM---TGEST 887 (1085)
Q Consensus 852 a-------------qiG~~VPa~~a-----~i~~~----------------------d~I~trig~~D-~i~---~~~St 887 (1085)
. .+| |+|+... .++.. +.++..++..+ ... ..+|.
T Consensus 76 ~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 154 (258)
T PRK11701 76 YALSEAERRRLLRTEWG-FVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSG 154 (258)
T ss_pred ccCCHHHHHHHhhcceE-EEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCH
Confidence 0 133 7776531 01111 12344555532 222 33444
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 888 f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.+.....+|++| +.+|+++|||||++|+|+..... ...++..+.++.+.++|++||+.+++..++++..
T Consensus 155 Gq~qrl~laral--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~ 223 (258)
T PRK11701 155 GMQQRLQIARNL--VTHPRLVFMDEPTGGLDVSVQAR-LLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL 223 (258)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 444445567777 89999999999999999766444 4455556655447899999999999988777643
No 169
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.61 E-value=3.4e-15 Score=179.52 Aligned_cols=158 Identities=16% Similarity=0.072 Sum_probs=112.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
+|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+++++.-.
T Consensus 3 ~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRL-----SDTKTLQLPSLTLN----AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEc-----CCeeecccceEEEc----CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHH
Confidence 58899999888 34569999999998 7999999999999999999999775310
Q ss_pred ---hhcccccccccc-----------ccch-------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHHh
Q 040956 852 ---AQLGCFVPCEMC-----------VLSL-------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQK 901 (1085)
Q Consensus 852 ---aqiG~~VPa~~a-----------~i~~-------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~ 901 (1085)
..+| |+|+... .+++ ++.++.++|..+......++++.+ ...+|++|
T Consensus 74 ~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al-- 150 (490)
T PRK10938 74 QLQKLVS-DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQAL-- 150 (490)
T ss_pred HHHHHhc-eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHH--
Confidence 1133 4554311 1111 233556677655444444444444 44566666
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|.++|||||++|.|+..... ...++..+.++ |.++|++||+.+.+..++++..+.
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l 208 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQ-LAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVL 208 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 89999999999999999776544 45566666664 889999999999998888765443
No 170
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.6e-15 Score=166.68 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=109.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
+.|+++++.+.|-. .+...+++|++|++. +|++++|+||||+|||||+|+++++.
T Consensus 3 ~~l~~~~l~~~~~~--~~~~~~l~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 3 NIIEVKNLTFKYKE--DQEKYTLNDVSFHVK----QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV 76 (279)
T ss_pred ceEEEEeEEEEcCC--CCcCeeeeeeEEEEe----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH
Confidence 46899999988821 012469999999998 79999999999999999999998753
Q ss_pred --HHhhcccccccccc----ccchHHH---------------------HHHHcCCccccccccchhh---HHhHHHHHHH
Q 040956 850 --ILAQLGCFVPCEMC----VLSLADT---------------------IFTRLGATDRIMTGESTFL---VECTETASVL 899 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a----~i~~~d~---------------------I~trig~~D~i~~~~Stf~---~Em~ela~iL 899 (1085)
+...+| |||+... ..++.+. ++..+|..+........++ .....+|++|
T Consensus 77 ~~~~~~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral 155 (279)
T PRK13650 77 WDIRHKIG-MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155 (279)
T ss_pred HHHHhhce-EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 112344 6666431 1222332 3344454433333333444 3444466777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||+.|+|+.... ....++..+.++.|.|+|++||+.+.+. .+++.
T Consensus 156 --~~~p~lLlLDEPt~~LD~~~~~-~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri 210 (279)
T PRK13650 156 --AMRPKIIILDEATSMLDPEGRL-ELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRV 210 (279)
T ss_pred --HcCCCEEEEECCcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEE
Confidence 8999999999999999976644 4455666666545899999999999884 56653
No 171
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.7e-15 Score=168.44 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=102.3
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------------Hhhccccccc
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------------LAQLGCFVPC 860 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------------laqiG~~VPa 860 (1085)
+...++++++|++. +|++++|+||||+|||||||+++++.- ..++| |+|+
T Consensus 35 ~~~~il~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~-~v~q 109 (269)
T cd03294 35 GQTVGVNDVSLDVR----EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS-MVFQ 109 (269)
T ss_pred CCceEeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE-EEec
Confidence 45678999999998 799999999999999999999977531 01344 6666
Q ss_pred ccc---ccchHH---------------------HHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCC
Q 040956 861 EMC---VLSLAD---------------------TIFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSLVILDEL 913 (1085)
Q Consensus 861 ~~a---~i~~~d---------------------~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEp 913 (1085)
... ..++.+ .++..+|..+.+. ..+|..+.....+|++| +.+|+++|||||
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral--~~~p~illLDEP 187 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL--AVDPDILLMDEA 187 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH--hcCCCEEEEcCC
Confidence 432 112222 2344455543333 34555555555577777 899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 914 grGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++|+|+..... ...++..+.+..|.++|++||+.+.+..++++..
T Consensus 188 t~~LD~~~~~~-l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~ 232 (269)
T cd03294 188 FSALDPLIRRE-MQDELLRLQAELQKTIVFITHDLDEALRLGDRIA 232 (269)
T ss_pred CccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999776544 4455666655447899999999999888777543
No 172
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.61 E-value=3e-15 Score=154.68 Aligned_cols=143 Identities=22% Similarity=0.199 Sum_probs=99.1
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------hhcccccccc
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------AQLGCFVPCE 861 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------aqiG~~VPa~ 861 (1085)
+++++...|- ++..+.+|++|++. +|++++|+||||+|||||+|++++..-. .++| |+|++
T Consensus 2 ~~~~~~~~~~----~~~~~l~~i~l~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~-~~~q~ 72 (166)
T cd03223 2 ELENLSLATP----DGRVLLKDLSFEIK----PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLL-FLPQR 72 (166)
T ss_pred EEEEEEEEcC----CCCeeeecCeEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEE-EECCC
Confidence 4556665551 12468999999998 7999999999999999999999885321 1344 66765
Q ss_pred cc--ccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 040956 862 MC--VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC 939 (1085)
Q Consensus 862 ~a--~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~ 939 (1085)
.. ..++.+.+.. + ....+|..+.....+++++ +.+|+++|||||++|.|......+ .+.+.+ .+.
T Consensus 73 ~~~~~~tv~~nl~~--~----~~~~LS~G~~~rv~laral--~~~p~~lllDEPt~~LD~~~~~~l----~~~l~~-~~~ 139 (166)
T cd03223 73 PYLPLGTLREQLIY--P----WDDVLSGGEQQRLAFARLL--LHKPKFVFLDEATSALDEESEDRL----YQLLKE-LGI 139 (166)
T ss_pred CccccccHHHHhhc--c----CCCCCCHHHHHHHHHHHHH--HcCCCEEEEECCccccCHHHHHHH----HHHHHH-hCC
Confidence 42 1234443321 0 2345677666667788888 899999999999999997664433 333333 368
Q ss_pred eEEEEEechhHHHhhcCc
Q 040956 940 RLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 940 tiL~aTH~~el~~~~~~~ 957 (1085)
++|++||+.++.. ++++
T Consensus 140 tiiivsh~~~~~~-~~d~ 156 (166)
T cd03223 140 TVISVGHRPSLWK-FHDR 156 (166)
T ss_pred EEEEEeCChhHHh-hCCE
Confidence 9999999988754 5554
No 173
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=5.4e-15 Score=169.08 Aligned_cols=164 Identities=20% Similarity=0.204 Sum_probs=114.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+...|... .+...+.+|++|++. +|++++|+|+||||||||+|+|+++.-
T Consensus 2 ~~L~v~~l~~~y~~~-~~~~~~l~~vsl~i~----~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 2 PLLDIRNLTIEFKTS-DGWVKAVDRVSMTLT----EGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred CeEEEeeeEEEEeCC-CCCEEEEeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 468999999888421 123569999999998 899999999999999999999987631
Q ss_pred ------H-----hhccccccccccc-----cch---------------------------HHHHHHHcCCcc------cc
Q 040956 851 ------L-----AQLGCFVPCEMCV-----LSL---------------------------ADTIFTRLGATD------RI 881 (1085)
Q Consensus 851 ------l-----aqiG~~VPa~~a~-----i~~---------------------------~d~I~trig~~D------~i 881 (1085)
+ ..+| |||++... .++ +..++.++|..+ ..
T Consensus 77 ~~~~~~~~~~~~~~i~-~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 77 RLSPRERRKLVGHNVS-MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred cCCHHHHHHHhCCCEE-EEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 0 0244 67765321 111 112344555542 12
Q ss_pred ccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 882 ~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
...+|..+.....+|++| +.+|+|||+|||++|+|...... ...++..+.++.|.++||+|||++++..++++..|.
T Consensus 156 p~~LSgG~~QRv~iArAL--~~~P~llilDEPts~LD~~~~~~-i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm 232 (330)
T PRK15093 156 PYELTEGECQKVMIAIAL--ANQPRLLIADEPTNAMEPTTQAQ-IFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232 (330)
T ss_pred chhCCHHHHHHHHHHHHH--HCCCCEEEEeCCCCcCCHHHHHH-HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 223444444444467777 89999999999999999776554 444566666655899999999999999888875544
No 174
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.8e-15 Score=165.82 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=109.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------H-
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-----------------L- 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-----------------l- 851 (1085)
.|.++++...|- ++..+.+|++|++. +|++++|+||||+|||||||+|+++.- .
T Consensus 6 ~l~~~~l~~~~~----~~~~il~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWR----NGHTALRDASFTVP----GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEec----CCcEEEEeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhcc
Confidence 688999988772 23579999999998 799999999999999999999977531 0
Q ss_pred hhccccccccccc-----cc-------------------------hHHHHHHHcCCcccccc---ccchhhHHhHHHHHH
Q 040956 852 AQLGCFVPCEMCV-----LS-------------------------LADTIFTRLGATDRIMT---GESTFLVECTETASV 898 (1085)
Q Consensus 852 aqiG~~VPa~~a~-----i~-------------------------~~d~I~trig~~D~i~~---~~Stf~~Em~ela~i 898 (1085)
..+| |+|+.... .. .++.++.++|..+.... .+|..+.....++++
T Consensus 78 ~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lara 156 (272)
T PRK15056 78 NLVA-YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARA 156 (272)
T ss_pred ceEE-EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1244 66654210 00 11224455565433333 344444444456777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
| +.+|+++|||||++|+|+.....+ ..++..+.++ ++++|++||+.+.+..++++.
T Consensus 157 L--~~~p~llllDEPt~~LD~~~~~~l-~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 157 I--AQQGQVILLDEPFTGVDVKTEARI-ISLLRELRDE-GKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred H--hcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEE
Confidence 7 899999999999999997765554 4556666554 889999999999888887753
No 175
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.61 E-value=3.8e-15 Score=155.37 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=98.5
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc---------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--------------- 856 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--------------- 856 (1085)
+++++..-|-. ....+.+|++|++. +|++++|+||||+|||||||+++++.- ...|.
T Consensus 2 ~~~~~~~~~~~---~~~~~l~~i~~~i~----~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 2 SINNVSFSYPE---QEQQVLKNLSLELK----QGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred EEEEEEEEeCC---CCccceEEEEEEEc----CCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHH
Confidence 45666665510 11368999999998 799999999999999999999987531 12221
Q ss_pred -----cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 040956 857 -----FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFR 931 (1085)
Q Consensus 857 -----~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle 931 (1085)
|+|+...- +. ....+++...+|..+.....+++++ +.+|+++|||||++|.|+..... ...++.
T Consensus 74 ~~~i~~~~q~~~~-------~~-~tv~~~i~~~LS~G~~qrv~laral--~~~p~~lllDEP~~~LD~~~~~~-l~~~l~ 142 (178)
T cd03247 74 SSLISVLNQRPYL-------FD-TTLRNNLGRRFSGGERQRLALARIL--LQDAPIVLLDEPTVGLDPITERQ-LLSLIF 142 (178)
T ss_pred HhhEEEEccCCee-------ec-ccHHHhhcccCCHHHHHHHHHHHHH--hcCCCEEEEECCcccCCHHHHHH-HHHHHH
Confidence 33332211 10 1123333555666666666677877 89999999999999999766444 444555
Q ss_pred HHHHhcCceEEEEEechhHHHhhcCc
Q 040956 932 QLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 932 ~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
.+. + ++++|++||+.+++. .+++
T Consensus 143 ~~~-~-~~tii~~sh~~~~~~-~~d~ 165 (178)
T cd03247 143 EVL-K-DKTLIWITHHLTGIE-HMDK 165 (178)
T ss_pred HHc-C-CCEEEEEecCHHHHH-hCCE
Confidence 553 3 789999999999886 4544
No 176
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=6.8e-15 Score=162.66 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=107.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..|+++|+.+.| ++..+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 12 ~~l~~~~l~~~~-----~~~~il~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 12 SKIQVRNLNFYY-----GKFHALKNINLDIA----KNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred ceEEEEEEEEEe-----CCeEEeeceeEEEc----CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 579999999988 34579999999998 799999999999999999999988642
Q ss_pred ----------Hhhcccccccccc--ccchHHH----------------------HHHHcCCc-------cccccccchhh
Q 040956 851 ----------LAQLGCFVPCEMC--VLSLADT----------------------IFTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a--~i~~~d~----------------------I~trig~~-------D~i~~~~Stf~ 889 (1085)
..++| |+|+... ..++.+. ++..++.. +.....+|..+
T Consensus 83 ~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 83 LTPKQDIALLRAKVG-MVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred cccccchHHHhcceE-EEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 01133 5555421 1222222 22333321 11122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....++++| +.+|+++|||||++|.|...... ...++..+. + +.++|++||+.+.+..++++..
T Consensus 162 ~qrv~laral--~~~p~lllLDEPt~~LD~~~~~~-l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~ 226 (260)
T PRK10744 162 QQRLCIARGI--AIRPEVLLLDEPCSALDPISTGR-IEELITELK-Q-DYTVVIVTHNMQQAARCSDYTA 226 (260)
T ss_pred HHHHHHHHHH--HCCCCEEEEcCCCccCCHHHHHH-HHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEE
Confidence 4445577777 89999999999999999766544 445555554 3 6799999999999888777543
No 177
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=4.3e-15 Score=158.90 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=101.7
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------h
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------------------A 852 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------------------a 852 (1085)
.++++..-| ++.. .|++|++. +|++++|+||||+|||||||+++++.-. .
T Consensus 2 ~~~~l~~~~-----~~~~--~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 2 RLDKIRFSY-----GEQP--MHFDLTFA----QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADR 70 (211)
T ss_pred EEEeEEEEe-----CCEe--cceEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHc
Confidence 456666655 2222 38899887 7999999999999999999999765310 1
Q ss_pred hccccccccccc---cchHH---------------------HHHHHcCCcccc---ccccchhhHHhHHHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRI---MTGESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i---~~~~Stf~~Em~ela~iL~~at~~ 905 (1085)
.+| |+|++... .++.+ .++.++|..+.. ...+|..+.....+++++ +.+|
T Consensus 71 ~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al--~~~p 147 (211)
T cd03298 71 PVS-MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVL--VRDK 147 (211)
T ss_pred cEE-EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH--hcCC
Confidence 233 66654311 12222 234444543222 234444444445566667 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+++|||||++|.|+..... ...++..+.++.++++|++||+.+++..++++..
T Consensus 148 ~llllDEP~~~LD~~~~~~-l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~ 200 (211)
T cd03298 148 PVLLLDEPFAALDPALRAE-MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVV 200 (211)
T ss_pred CEEEEcCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEE
Confidence 9999999999999777554 4445555555448899999999999988777543
No 178
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.61 E-value=2.5e-15 Score=158.27 Aligned_cols=135 Identities=22% Similarity=0.200 Sum_probs=92.5
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------------Hhhcccccccccc
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-----------------------LAQLGCFVPCEMC 863 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-----------------------laqiG~~VPa~~a 863 (1085)
+..++++++|++. +|++++|+||||+|||||||+|+++.- ...+| |+|+...
T Consensus 4 ~~~il~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~~q~~~ 78 (190)
T TIGR01166 4 GPEVLKGLNFAAE----RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG-LVFQDPD 78 (190)
T ss_pred ccceecceeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEE-EEecChh
Confidence 4578999999998 799999999999999999999976431 11234 6666531
Q ss_pred ----ccchHH---------------------HHHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCCCC
Q 040956 864 ----VLSLAD---------------------TIFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDELGR 915 (1085)
Q Consensus 864 ----~i~~~d---------------------~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEpgr 915 (1085)
..++.+ .++..+|..+..... +|..+.....++++| +.+|+++|||||++
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~~p~llllDEPt~ 156 (190)
T TIGR01166 79 DQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAV--AMRPDVLLLDEPTA 156 (190)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHH--hcCCCEEEEcCCcc
Confidence 112222 233445554333333 333333344466666 89999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 916 GTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
|.|+..... ...++..+.++ +.++|++||+.++
T Consensus 157 ~LD~~~~~~-~~~~l~~~~~~-~~tili~sH~~~~ 189 (190)
T TIGR01166 157 GLDPAGREQ-MLAILRRLRAE-GMTVVISTHDVDL 189 (190)
T ss_pred cCCHHHHHH-HHHHHHHHHHc-CCEEEEEeecccc
Confidence 999776544 45566666654 8899999999875
No 179
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.61 E-value=2.9e-15 Score=159.45 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=100.0
Q ss_pred EcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------------
Q 040956 794 KGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------------- 850 (1085)
Q Consensus 794 k~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------------- 850 (1085)
+|+.+.| ++..++++++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 2 KNISKKF-----GDKIILDDLNLTIE----KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred cceEEEE-----CCEEEEeceEEEEe----CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHH
Confidence 3445555 23578999999987 799999999999999999999976531
Q ss_pred --Hhhcccccccccc---ccchH---------------------HHHHHHcCCcccc---ccccchhhHHhHHHHHHHHh
Q 040956 851 --LAQLGCFVPCEMC---VLSLA---------------------DTIFTRLGATDRI---MTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 851 --laqiG~~VPa~~a---~i~~~---------------------d~I~trig~~D~i---~~~~Stf~~Em~ela~iL~~ 901 (1085)
...+| |+++... ..++. ..++.++|..+.. ...+|..+.....++++|
T Consensus 73 ~~~~~i~-~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral-- 149 (206)
T TIGR03608 73 FRREKLG-YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI-- 149 (206)
T ss_pred HHHhCee-EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH--
Confidence 01233 5554321 11221 2244555554332 334555555455577777
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
+.+|+++|||||++|.|+..... ...++..+.++ +.++|++||+.++.. +++
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tii~~sh~~~~~~-~~d 201 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDE-VLDLLLELNDE-GKTIIIVTHDPEVAK-QAD 201 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHh-hcC
Confidence 89999999999999999766544 45566666654 889999999998764 454
No 180
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=156.93 Aligned_cols=160 Identities=24% Similarity=0.254 Sum_probs=122.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|.++++.+.| +.+.|.||++|.+. +|++++|.||||+||||.+-++.+++
T Consensus 3 ~~L~a~~l~K~y-----~kr~Vv~~Vsl~v~----~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 3 STLVAENLAKSY-----KKRKVVNDVSLEVN----SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM 73 (243)
T ss_pred cEEEehhhhHhh-----CCeeeeeeeeEEEc----CCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh
Confidence 468888988888 67899999999998 89999999999999999999997654
Q ss_pred -HHhhccc-ccccccc---ccchHHHHHHHcC--------------------------CccccccccchhhHHhHHHHHH
Q 040956 850 -ILAQLGC-FVPCEMC---VLSLADTIFTRLG--------------------------ATDRIMTGESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~-~VPa~~a---~i~~~d~I~trig--------------------------~~D~i~~~~Stf~~Em~ela~i 898 (1085)
--|++|. |+|++.. .+++.|+|..-+. ..+.....+|.......|+|++
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHH
Confidence 2255442 8898753 3445554433222 1223333445555556789999
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
| |.+|+++||||||+|.||..-.. ...++.+|..+ |.-+|++-|+...+-.++++..+.
T Consensus 154 L--a~~P~fiLLDEPFAGVDPiaV~d-Iq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 154 L--AANPKFILLDEPFAGVDPIAVID-IQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred H--hcCCCEEEecCCccCCCchhHHH-HHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEE
Confidence 9 99999999999999999987555 45688888876 888999999998888888876554
No 181
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=6.4e-15 Score=164.59 Aligned_cols=160 Identities=15% Similarity=0.128 Sum_probs=107.7
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++.+.|-........++++++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIE----DGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 67888887772100001368999999998 799999999999999999999977531
Q ss_pred -----Hhhccccccccc----cccchHHH---------------------HHHHcCCcc-cc---ccccchhhHHhHHHH
Q 040956 851 -----LAQLGCFVPCEM----CVLSLADT---------------------IFTRLGATD-RI---MTGESTFLVECTETA 896 (1085)
Q Consensus 851 -----laqiG~~VPa~~----a~i~~~d~---------------------I~trig~~D-~i---~~~~Stf~~Em~ela 896 (1085)
...+| |+|+.. ...++.+. ++..+|..+ .. ...+|..+.....++
T Consensus 79 ~~~~~~~~i~-~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 79 DIKQIRKKVG-LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred CHHHHHhheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 01244 777653 11122222 233445432 12 223444444444566
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++| +.+|+|+|||||++|+|+..... ...++..+.+. +.++|++||+.+++..++++..
T Consensus 158 ~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 158 GIL--AMEPKILVLDEPTAGLDPKGRKE-LMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred HHH--HcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEE
Confidence 666 89999999999999999776544 44555666554 8899999999999888877543
No 182
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=6.9e-15 Score=167.94 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=114.6
Q ss_pred CEEEEEcceeeeeecCC-----CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------
Q 040956 789 PVLKIKGLWHPFALGEN-----GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~-----~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------- 849 (1085)
++|+++|+...|-.... +...+.+||+|++. +|++++|+|+||||||||+|+|+++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~----~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l 79 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLE----RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDL 79 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEEC----CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 68999999988831110 12468999999998 79999999999999999999997643
Q ss_pred ----------HHhhcccccccccc-----ccch----------------------HHHHHHHcCCcc-ccc---cccchh
Q 040956 850 ----------ILAQLGCFVPCEMC-----VLSL----------------------ADTIFTRLGATD-RIM---TGESTF 888 (1085)
Q Consensus 850 ----------ilaqiG~~VPa~~a-----~i~~----------------------~d~I~trig~~D-~i~---~~~Stf 888 (1085)
+..++| |||+... .+.+ +..++.++|..+ ... ..+|..
T Consensus 80 ~~~~~~~~~~~r~~i~-~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 80 LKADPEAQKLLRQKIQ-IVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred CcCCHHHHHHHhCCEE-EEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 112344 6776531 0111 122445556532 222 334444
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.....+|++| +.+|+|||+|||++|+|......+ ..++..+.++.|.++||+|||+.++..++++..+.
T Consensus 159 q~QRv~iArAL--~~~P~lLilDEPts~LD~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm 228 (327)
T PRK11308 159 QRQRIAIARAL--MLDPDVVVADEPVSALDVSVQAQV-LNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228 (327)
T ss_pred HHHHHHHHHHH--HcCCCEEEEECCCccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44444577777 899999999999999997665444 34555666656899999999999999888875544
No 183
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.61 E-value=4e-15 Score=179.41 Aligned_cols=159 Identities=23% Similarity=0.276 Sum_probs=113.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++++.+-| ++..+++|++|++. +|++++|+||||||||||||+++++.-
T Consensus 3 ~~i~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 3 ALLQLKGIDKAF-----PGVKALSGAALNVY----PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred ceEEEeeeEEEe-----CCeEEeeeeeEEEc----CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 578999999888 34679999999997 799999999999999999999977531
Q ss_pred ----Hhhcccccccccc---ccch-------------------------HHHHHHHcCCcccccc---ccchhhHHhHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSL-------------------------ADTIFTRLGATDRIMT---GESTFLVECTET 895 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~-------------------------~d~I~trig~~D~i~~---~~Stf~~Em~el 895 (1085)
..++| |||+... .+++ +..++.++|..+.... .+|..+.....+
T Consensus 74 ~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 152 (501)
T PRK10762 74 KSSQEAGIG-IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI 152 (501)
T ss_pred HHHHhCCEE-EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 01244 6665421 1111 1234555665543333 344444444557
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
|++| +.+|.|+|||||++|.|+..... ...++..+.+. +.++|++||+.+++..++++..+.
T Consensus 153 a~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 153 AKVL--SFESKVIIMDEPTDALTDTETES-LFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred HHHH--hcCCCEEEEeCCcCCCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 7777 89999999999999999776554 44566667654 889999999999998888765443
No 184
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=5.1e-15 Score=160.80 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=103.1
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------H
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------L 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------l 851 (1085)
|+++++.+.| ++. +.+++|++. +|++++|+||||+|||||||+++++.- .
T Consensus 2 l~~~~l~~~~-----~~~--~~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLY-----HHL--PMRFDLTVE----RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEE-----CCc--cceeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhh
Confidence 6788888887 222 238899887 799999999999999999999977531 0
Q ss_pred hhcccccccccc---ccchHHH---------------------HHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCC
Q 040956 852 AQLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRIMT---GESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 852 aqiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~ 904 (1085)
..+| |+|+... .+++.+. ++.++|..+.+.. .+|..+.....+++++ +.+
T Consensus 71 ~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~~ 147 (232)
T PRK10771 71 RPVS-MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCL--VRE 147 (232)
T ss_pred ccEE-EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHH--hcC
Confidence 1233 6665421 1222222 3344444332222 3344444344466666 899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|+++|||||++|.|...... ...++..+.++.++++|++||+.+++..++++.
T Consensus 148 p~lllLDEP~~gLD~~~~~~-~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 200 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQE-MLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS 200 (232)
T ss_pred CCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 99999999999999776544 445565665544789999999999988877754
No 185
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.60 E-value=5.5e-15 Score=161.86 Aligned_cols=153 Identities=17% Similarity=0.091 Sum_probs=103.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-HHh-----------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-ILA----------------- 852 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-ila----------------- 852 (1085)
|+++|+...| ++..+.++++|.+. +|++++|+||||+|||||||+++++. +-.
T Consensus 2 i~~~nl~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSV-----EDKAILRGLNLEVR----PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEe-----CCeeeeecceeEEc----CCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH
Confidence 6788888877 34579999999997 79999999999999999999998863 111
Q ss_pred ------hccccccccccccch-------------------------------HHHHHHHcCCccc----cc-cccchhhH
Q 040956 853 ------QLGCFVPCEMCVLSL-------------------------------ADTIFTRLGATDR----IM-TGESTFLV 890 (1085)
Q Consensus 853 ------qiG~~VPa~~a~i~~-------------------------------~d~I~trig~~D~----i~-~~~Stf~~ 890 (1085)
.+| |+++.....+. ++.++..++..+. .. ..+|..+.
T Consensus 73 ~~~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 151 (248)
T PRK09580 73 EDRAGEGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151 (248)
T ss_pred HHHhhcceE-EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHH
Confidence 122 44443211100 0112222232211 11 13555555
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh-cCc
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF-ASH 957 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~-~~~ 957 (1085)
....+++++ +.+|+++|||||++|+|...... ...++..+.+. ++|+|++||+++++..+ +++
T Consensus 152 qrv~laral--~~~p~illLDEPt~~LD~~~~~~-l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~ 215 (248)
T PRK09580 152 KRNDILQMA--VLEPELCILDESDSGLDIDALKI-VADGVNSLRDG-KRSFIIVTHYQRILDYIKPDY 215 (248)
T ss_pred HHHHHHHHH--HcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCE
Confidence 556677777 89999999999999999766544 34456666654 78999999999988775 554
No 186
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=6.3e-15 Score=161.77 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=107.1
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
.|+++++++.| ++..+++|++|.+. +|++++|+||||+||||||++|+++.-.
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 3 KIEIRDLKVSF-----GQVEVLDGVNLEIP----DNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred eEEEEeeEEEE-----CCeeeeecceeEEc----CCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence 58899998887 34579999999998 7999999999999999999999886321
Q ss_pred --------hhcccccccccc---ccchHHHH-----------------------HHHcCCc-------cccccccchhhH
Q 040956 852 --------AQLGCFVPCEMC---VLSLADTI-----------------------FTRLGAT-------DRIMTGESTFLV 890 (1085)
Q Consensus 852 --------aqiG~~VPa~~a---~i~~~d~I-----------------------~trig~~-------D~i~~~~Stf~~ 890 (1085)
..+| |+|+... ..++.+.+ +..+|.. +.....+|..+.
T Consensus 74 ~~~~~~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 74 KMDVIELRRRVQ-MVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred cCCHHHHhccEE-EEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHH
Confidence 1233 5665432 22333333 2223321 111223444444
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
....++++| +.+|+++|||||++|.|+.....+ ..++..+. + +.++|++||+.+.+..++++..
T Consensus 153 qrv~laral--~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~ 216 (250)
T PRK14247 153 QRLCIARAL--AFQPEVLLADEPTANLDPENTAKI-ESLFLELK-K-DMTIVLVTHFPQQAARISDYVA 216 (250)
T ss_pred HHHHHHHHH--hcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEE
Confidence 444566666 899999999999999997765544 44555553 3 6899999999999887776543
No 187
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.1e-15 Score=162.26 Aligned_cols=155 Identities=21% Similarity=0.167 Sum_probs=107.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.++++++...| ++..+++|++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~ 72 (246)
T PRK14269 2 IAKTTNLNLFY-----GKKQALFDINMQIE----QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72 (246)
T ss_pred ceeeeeeEEEE-----CCEeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC
Confidence 36788888887 34679999999998 799999999999999999999987531
Q ss_pred -----Hhhccccccccccc--cchHH-----------------------HHHHHcCCcc-------ccccccchhhHHhH
Q 040956 851 -----LAQLGCFVPCEMCV--LSLAD-----------------------TIFTRLGATD-------RIMTGESTFLVECT 893 (1085)
Q Consensus 851 -----laqiG~~VPa~~a~--i~~~d-----------------------~I~trig~~D-------~i~~~~Stf~~Em~ 893 (1085)
...+| |+|+.... .++.+ .++..++..+ .....+|..+....
T Consensus 73 ~~~~~~~~i~-~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 73 DVVALRKNVG-MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred CHHHHhhhEE-EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHH
Confidence 12244 66665311 12222 2334444421 11233455555555
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.++++| +.+|.++|||||++|+|...... ...++..+. + +.++|++||+.+++..++++..
T Consensus 152 ~laral--~~~p~lllLDEP~~~LD~~~~~~-l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~ 212 (246)
T PRK14269 152 CIARAL--AIKPKLLLLDEPTSALDPISSGV-IEELLKELS-H-NLSMIMVTHNMQQGKRVADYTA 212 (246)
T ss_pred HHHHHH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEE
Confidence 577777 89999999999999999766544 344555553 3 7899999999999888777543
No 188
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7.2e-15 Score=161.44 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=107.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++++...| ++..+.++++|++. +|++++|+||||+||||||++++++..
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~~s~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 4 PILQVSDLSVYY-----NKKKALNSVSLDFY----PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred ceEEEEeeEEEE-----CCeeeeeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 578999999888 34579999999998 799999999999999999999987521
Q ss_pred ----------Hhhcccccccccc--ccchHHHHH----------------------HHcCCc-------cccccccchhh
Q 040956 851 ----------LAQLGCFVPCEMC--VLSLADTIF----------------------TRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a--~i~~~d~I~----------------------trig~~-------D~i~~~~Stf~ 889 (1085)
..++| |||+... ..++.+.+. .+++.. +.....+|..+
T Consensus 75 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 75 YSPRTDTVDLRKEIG-MVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cCcccchHhhhhcEE-EEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 01233 5665432 123333331 112211 11112244444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|+|+|||||++|+|......+ ..++..+.+ +.++|++||+.+.+..++++..+
T Consensus 154 ~qrv~laral--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14239 154 QQRVCIARVL--ATSPKIILLDEPTSALDPISAGKI-EETLLGLKD--DYTMLLVTRSMQQASRISDRTGF 219 (252)
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCccccCHHHHHHH-HHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEE
Confidence 4444566666 899999999999999997775554 455556543 57999999999988887776433
No 189
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.60 E-value=5.8e-15 Score=162.68 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=109.3
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
.|+++|++..| +..++++++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 4 ~l~~~~l~~~~------~~~il~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~ 73 (254)
T PRK10418 4 QIELRNIALQA------AQPLVHGVSLTLQ----RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73 (254)
T ss_pred EEEEeCeEEEe------ccceecceEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc
Confidence 58899998877 2468999999998 7999999999999999999999876321
Q ss_pred -----hhcccccccccc-c----cchH-------------------HHHHHHcCCcc------ccccccchhhHHhHHHH
Q 040956 852 -----AQLGCFVPCEMC-V----LSLA-------------------DTIFTRLGATD------RIMTGESTFLVECTETA 896 (1085)
Q Consensus 852 -----aqiG~~VPa~~a-~----i~~~-------------------d~I~trig~~D------~i~~~~Stf~~Em~ela 896 (1085)
..+| |||++.. . .++. ..++.+++..+ .....+|..+.....++
T Consensus 74 ~~~~~~~i~-~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 74 CALRGRKIA-TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred cccccceEE-EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 1233 6666531 0 1111 12334445432 12233455555555577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|+++|||||++|.|..... ....++..+.++.+.++|++||+.+.+..++++.
T Consensus 153 ral--~~~p~lLlLDEPt~~LD~~~~~-~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 153 LAL--LCEAPFIIADEPTTDLDVVAQA-RILDLLESIVQKRALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred HHH--hcCCCEEEEeCCCcccCHHHHH-HHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEE
Confidence 777 8999999999999999976644 4555666666545789999999999988777754
No 190
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7.9e-15 Score=161.28 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=106.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|++++++..| ++..+++|++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 3 FAIETVNLRVYY-----GSNHVIKGVDLKIP----QNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 (253)
T ss_pred ceEEEEeEEEEe-----CCeeeeecceEEEc----CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence 468999999888 34579999999998 7999999999999999999999876321
Q ss_pred -----------hhcccccccccc---ccchHHHH-----------------------HHHcCCc-------cccccccch
Q 040956 852 -----------AQLGCFVPCEMC---VLSLADTI-----------------------FTRLGAT-------DRIMTGEST 887 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a---~i~~~d~I-----------------------~trig~~-------D~i~~~~St 887 (1085)
.++| |+|+... .+++.+.+ +..+|.. +.....+|.
T Consensus 74 ~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 74 YSPDVDPIEVRREVG-MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred cccccChHHHhhcee-EEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 1123 5555421 12233322 2223321 111122333
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 888 f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.+.....++++| +.+|+++|||||++|.|+..... ...++..+.+ ++++|++||+.+.+..++++..
T Consensus 153 G~~qrv~laral--~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 153 GQRQRLVIARAL--AMKPKILLMDEPTANIDPVGTAK-IEELLFELKK--EYTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEcCCCccCCHHHHHH-HHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEE
Confidence 333344466666 89999999999999999766444 4455555543 5899999999999888887643
No 191
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=3.5e-15 Score=180.13 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=113.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++|+...| ++..+++|++|++. +|++++|+||||||||||||+++++.-.
T Consensus 4 ~~l~~~nl~~~~-----~~~~il~~isl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 4 YLLEMKNITKTF-----GGVKALDNVSLKVR----AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS 74 (506)
T ss_pred ceEEEeeeEEEe-----CCeEeecceeEEEe----CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC
Confidence 579999999888 35679999999998 7999999999999999999999876421
Q ss_pred -------hhcccccccccc---ccchH------------------------HHHHHHcCCccccccccchhhHH---hHH
Q 040956 852 -------AQLGCFVPCEMC---VLSLA------------------------DTIFTRLGATDRIMTGESTFLVE---CTE 894 (1085)
Q Consensus 852 -------aqiG~~VPa~~a---~i~~~------------------------d~I~trig~~D~i~~~~Stf~~E---m~e 894 (1085)
.++| |||++.. .+++. ..++.++|..+......++++.+ ...
T Consensus 75 ~~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 75 NIRDTERAGIA-IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred CHHHHHHCCeE-EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 1134 6665421 11122 23445556543333333444444 444
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|++| +.+|+++|||||++|.|+.....+ ..++..+.++ +.++|++||+.+++..++++..+.
T Consensus 154 la~al--~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 154 IAKAL--NKQARLLILDEPTASLTESETAVL-LDIIRDLKAH-GIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred HHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEE
Confidence 66677 899999999999999997775554 4566666554 889999999999998888765443
No 192
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=8.5e-15 Score=164.19 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=108.8
Q ss_pred CCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH---------------
Q 040956 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------------- 851 (1085)
Q Consensus 787 ~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------------- 851 (1085)
+++.|+++++.+.| ++..+++|++|.+. +|++++|+||||+|||||||+|+++.-.
T Consensus 36 ~~~~l~i~~l~~~~-----~~~~il~~is~~i~----~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~ 106 (285)
T PRK14254 36 GETVIEARDLNVFY-----GDEQALDDVSMDIP----ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK 106 (285)
T ss_pred CCceEEEEEEEEEE-----CCEeeEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 45789999999888 34579999999998 7999999999999999999999876310
Q ss_pred -------------hhccccccccccc--cchHHH--------------------HHHHcCCc----cccc---cccchhh
Q 040956 852 -------------AQLGCFVPCEMCV--LSLADT--------------------IFTRLGAT----DRIM---TGESTFL 889 (1085)
Q Consensus 852 -------------aqiG~~VPa~~a~--i~~~d~--------------------I~trig~~----D~i~---~~~Stf~ 889 (1085)
..+| |+|+.... .++.+. ++..+|.. +.+. ..+|..+
T Consensus 107 ~i~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 107 NVYDADVDPVALRRRIG-MVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred EccccccchHhhhccEE-EEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 1123 55654211 122222 22333432 1122 2344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.....++++| +.+|+|+|||||++|+|...... ...++..+.+ +.++|++||+.+++..++++.
T Consensus 186 ~qrv~LAraL--~~~p~lLLLDEPts~LD~~~~~~-l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 186 QQRLCIARAI--APDPEVILMDEPASALDPVATSK-IEDLIEELAE--EYTVVIVTHNMQQAARISDKT 249 (285)
T ss_pred HHHHHHHHHH--HcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEE
Confidence 4444566777 89999999999999999766444 4556666654 468999999999998887753
No 193
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.60 E-value=5.8e-15 Score=161.85 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=106.6
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------- 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------- 851 (1085)
|+++++.+.| ++..+++|++|++. +|++++|+||||+|||||||+++++.-.
T Consensus 2 l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~ 72 (247)
T TIGR00972 2 IEIENLNLFY-----GEKEALKNINLDIP----KNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72 (247)
T ss_pred EEEEEEEEEE-----CCeeeecceeEEEC----CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccc
Confidence 6788888877 34578999999998 7999999999999999999999875321
Q ss_pred ---------hhccccccccccc--cchHHH----------------------HHHHcCCc----cccc---cccchhhHH
Q 040956 852 ---------AQLGCFVPCEMCV--LSLADT----------------------IFTRLGAT----DRIM---TGESTFLVE 891 (1085)
Q Consensus 852 ---------aqiG~~VPa~~a~--i~~~d~----------------------I~trig~~----D~i~---~~~Stf~~E 891 (1085)
.++| |+|+.... .++.+. ++..+|.. +... ..+|..+..
T Consensus 73 ~~~~~~~~~~~i~-~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 73 KKIDVVELRRRVG-MVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred cccchHHHHhheE-EEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHH
Confidence 1123 55554211 222222 22334443 2222 234444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
...++++| +.+|+++|||||++|.|+..... ...++..+.+ ++++|++||+.+.+..++++..
T Consensus 152 rv~laral--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~ 214 (247)
T TIGR00972 152 RLCIARAL--AVEPEVLLLDEPTSALDPIATGK-IEELIQELKK--KYTIVIVTHNMQQAARISDRTA 214 (247)
T ss_pred HHHHHHHH--hcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEE
Confidence 55577777 89999999999999999776554 4456666654 4799999999999888887643
No 194
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=3.8e-15 Score=173.73 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=102.9
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------------Hhhccccccccc
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------------LAQLGCFVPCEM 862 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------------laqiG~~VPa~~ 862 (1085)
..++++++|++. +|++++|+||||||||||||+|+++.- ..++| |||+..
T Consensus 41 ~~~L~~isl~i~----~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ig-yv~Q~~ 115 (400)
T PRK10070 41 SLGVKDASLAIE----EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA-MVFQSF 115 (400)
T ss_pred eEEEEeEEEEEc----CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEE-EEECCC
Confidence 347899999998 799999999999999999999976531 01355 777653
Q ss_pred cc---cchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCC
Q 040956 863 CV---LSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLVILDELGR 915 (1085)
Q Consensus 863 a~---i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgr 915 (1085)
.. .++.+ .++..+|..+.... .+|..+.....++++| +.+|+++|||||++
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL--~~~P~iLLLDEPts 193 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARAL--AINPDILLMDEAFS 193 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHH--hcCCCEEEEECCCc
Confidence 21 12222 23445555443333 3444444444577777 89999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 916 GTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
|+|+.....+ +.++..+.++.++|+||+||+.+.+..++++..+.
T Consensus 194 ~LD~~~r~~l-~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL 238 (400)
T PRK10070 194 ALDPLIRTEM-QDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM 238 (400)
T ss_pred cCCHHHHHHH-HHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence 9998775544 44555565545889999999999998888765443
No 195
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.60 E-value=4e-15 Score=159.58 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=103.7
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------Hh
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------LA 852 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------la 852 (1085)
+++++++.| + .++.+++|.+. +|++++|+||||+|||||+|+++++.- ..
T Consensus 2 ~~~~l~~~~-----~--~~~~~~s~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEY-----E--HLPMEFDLNVA----DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeeeEEe-----C--CcceeeEEEEe----CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhcc
Confidence 567777666 1 24568999987 799999999999999999999987531 01
Q ss_pred hcccccccccc---ccchHHH---------------------HHHHcCCcccc---ccccchhhHHhHHHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMC---VLSLADT---------------------IFTRLGATDRI---MTGESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a---~i~~~d~---------------------I~trig~~D~i---~~~~Stf~~Em~ela~iL~~at~~ 905 (1085)
.+| |+|+... .+++.+. ++..+|..+.. ...+|..+.....+++++ +.+|
T Consensus 71 ~i~-~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral--~~~p 147 (213)
T TIGR01277 71 PVS-MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCL--VRPN 147 (213)
T ss_pred ceE-EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHH--hcCC
Confidence 233 6666531 1222222 33444443322 233444444455567767 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+++|||||+.|.|...... ...++..+.++.++++|++||+.+++..++++..
T Consensus 148 ~llllDEPt~~LD~~~~~~-~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~ 200 (213)
T TIGR01277 148 PILLLDEPFSALDPLLREE-MLALVKQLCSERQRTLLMVTHHLSDARAIASQIA 200 (213)
T ss_pred CEEEEcCCCccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEE
Confidence 9999999999999776544 4455566655447899999999999887777543
No 196
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7.8e-15 Score=163.57 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=109.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++++.+.| ++..++++++|.+. +|++++|+||||+||||||++++++.-
T Consensus 19 ~~l~~~nl~~~~-----~~~~~l~~vs~~i~----~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 19 SVFEVEGVKVFY-----GGFLALVDVHLKIP----AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred ceEEEeeEEEEe-----CCeEEEeeeeeEEc----CCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 689999999888 34579999999998 799999999999999999999986531
Q ss_pred ----------Hhhccccccccccc--cchHHHH--------------------HHHcCCc----ccc---ccccchhhHH
Q 040956 851 ----------LAQLGCFVPCEMCV--LSLADTI--------------------FTRLGAT----DRI---MTGESTFLVE 891 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a~--i~~~d~I--------------------~trig~~----D~i---~~~~Stf~~E 891 (1085)
...+| |+|+.... .++.+.+ +..++.. +.. ...+|..+..
T Consensus 90 ~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 90 YDSQINSVKLRRQVG-MVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred ccccchhHHHhhcEE-EEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHH
Confidence 01233 66665321 1233332 1222221 111 1224444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
...++++| +.+|+|+|||||++|+|...... ...++..+. + ++++|++||+.+.+..++++..+.
T Consensus 169 rv~LAraL--~~~p~lllLDEPt~~LD~~~~~~-l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 233 (274)
T PRK14265 169 RLCIARAI--AMKPDVLLMDEPCSALDPISTRQ-VEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFF 233 (274)
T ss_pred HHHHHHHH--hhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44566667 89999999999999999776544 444555554 3 689999999999999888765444
No 197
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.60 E-value=2.4e-15 Score=163.98 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=99.9
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------Hhhccccccccc---
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------LAQLGCFVPCEM--- 862 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------laqiG~~VPa~~--- 862 (1085)
+...++++++|.+. +|++++|+||||+|||||||+|+++.- ..++| |+|+..
T Consensus 32 ~~~~il~~vs~~i~----~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~~~~~~~ 106 (236)
T cd03267 32 REVEALKGISFTIE----KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG-VVFGQKTQL 106 (236)
T ss_pred CCeeeeeceeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEE-EEcCCcccc
Confidence 45679999999997 799999999999999999999987531 11344 555221
Q ss_pred -cccchHH---------------------HHHHHcCCcccc---ccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCC
Q 040956 863 -CVLSLAD---------------------TIFTRLGATDRI---MTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917 (1085)
Q Consensus 863 -a~i~~~d---------------------~I~trig~~D~i---~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGT 917 (1085)
..++..+ .++..+|..+.. ...+|..+.....++++| +.+|+++|||||++|+
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al--~~~p~llllDEPt~~L 184 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAAL--LHEPEILFLDEPTIGL 184 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH--hcCCCEEEEcCCCCCC
Confidence 1122222 123334443322 233455454455577777 8999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 918 s~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|+..... ...++..+.++.++++|++||+++++..++++.
T Consensus 185 D~~~~~~-l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 224 (236)
T cd03267 185 DVVAQEN-IRNFLKEYNRERGTTVLLTSHYMKDIEALARRV 224 (236)
T ss_pred CHHHHHH-HHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEE
Confidence 9776554 444555665544789999999999988887754
No 198
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.1e-15 Score=178.79 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=113.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+..-| ++..+.+|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 4 ~~l~~~~l~~~~-----~~~~il~~vs~~i~----~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 4 PYISMAGIGKSF-----GPVHALKSVNLTVY----PGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH 74 (510)
T ss_pred ceEEEeeeEEEc-----CCeEEeeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH
Confidence 578999999887 34579999999998 799999999999999999999977541
Q ss_pred ---H-hhcccccccccc---ccchH----------------------------HHHHHHcCCccccccccchhhHH---h
Q 040956 851 ---L-AQLGCFVPCEMC---VLSLA----------------------------DTIFTRLGATDRIMTGESTFLVE---C 892 (1085)
Q Consensus 851 ---l-aqiG~~VPa~~a---~i~~~----------------------------d~I~trig~~D~i~~~~Stf~~E---m 892 (1085)
. .++| |||+... .+++. +.++.++|..+......++++.+ .
T Consensus 75 ~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 75 KLAAQLGIG-IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHHHHCCeE-EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 0 1244 6666421 11122 22344555544333333444444 4
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
..+|++| +.+|+++|||||++|.|+..... ...++..+.++ |.++|++||+.+++..++++..+.
T Consensus 154 v~ia~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l 218 (510)
T PRK09700 154 LEIAKTL--MLDAKVIIMDEPTSSLTNKEVDY-LFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVM 218 (510)
T ss_pred HHHHHHH--hcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4466677 89999999999999999776544 44566677665 889999999999998888765443
No 199
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=6.2e-15 Score=165.06 Aligned_cols=158 Identities=21% Similarity=0.191 Sum_probs=109.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
.+|.++++...|-. ....+.++++|++. +|++++|+||||+|||||||+|+++.-.
T Consensus 4 ~~l~i~~l~~~~~~---~~~~~l~~v~l~i~----~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~ 76 (282)
T PRK13640 4 NIVEFKHVSFTYPD---SKKPALNDISFSIP----RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA 76 (282)
T ss_pred ceEEEEEEEEEcCC---CCccceeeEEEEEc----CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc
Confidence 47899999988721 12469999999998 7999999999999999999999876421
Q ss_pred -------hhcccccccccc----ccchHHH---------------------HHHHcCCccccc---cccchhhHHhHHHH
Q 040956 852 -------AQLGCFVPCEMC----VLSLADT---------------------IFTRLGATDRIM---TGESTFLVECTETA 896 (1085)
Q Consensus 852 -------aqiG~~VPa~~a----~i~~~d~---------------------I~trig~~D~i~---~~~Stf~~Em~ela 896 (1085)
.++| |+|+... ..++.+. ++..+|..+... ..+|..+.....++
T Consensus 77 ~~~~~~~~~ig-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 77 KTVWDIREKVG-IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred CCHHHHHhheE-EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence 2344 6665431 1223332 333445443222 33444444445567
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|+|+|||||++|+|......+ ..++..+.++.|.++|++||+++++. .+++.
T Consensus 156 ral--~~~P~llllDEPt~gLD~~~~~~l-~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i 213 (282)
T PRK13640 156 GIL--AVEPKIIILDESTSMLDPAGKEQI-LKLIRKLKKKNNLTVISITHDIDEAN-MADQV 213 (282)
T ss_pred HHH--HcCCCEEEEECCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHH-hCCEE
Confidence 777 899999999999999997765544 44555665544889999999999885 56543
No 200
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=9.5e-15 Score=162.24 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=108.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++|+.+.| ++..+++|++|.+. +|++++|+||||+|||||||+|+++.-.
T Consensus 18 ~~l~~~nl~~~~-----~~~~il~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i 88 (267)
T PRK14235 18 IKMRARDVSVFY-----GEKQALFDVDLDIP----EKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 (267)
T ss_pred ceEEEEeEEEEE-----CCEEEEEEEEEEEc----CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEC
Confidence 579999999988 34679999999998 7999999999999999999999886421
Q ss_pred -----------hhccccccccccc--cchHHH-----------------------HHHHcCCcc-------ccccccchh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADT-----------------------IFTRLGATD-------RIMTGESTF 888 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~-----------------------I~trig~~D-------~i~~~~Stf 888 (1085)
..+| |+|+.... .++.+. ++..+|..+ .....+|..
T Consensus 89 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 89 YDPRLDVVELRARVG-MVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred cccccchHHHhhceE-EEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 1123 55554211 122222 233334321 112234444
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.....++++| +.+|+++|||||++|.|+..... ...++..+.+ +.++|++||+.+.+..++++..
T Consensus 168 q~qrv~laral--~~~p~lllLDEPt~~LD~~~~~~-l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~ 233 (267)
T PRK14235 168 QQQRLCIARAI--AVSPEVILMDEPCSALDPIATAK-VEELIDELRQ--NYTIVIVTHSMQQAARVSQRTA 233 (267)
T ss_pred HHHHHHHHHHH--HcCCCEEEEeCCCcCCCHHHHHH-HHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEE
Confidence 44444567777 89999999999999999776544 4455556543 5799999999999988777543
No 201
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=7e-15 Score=167.88 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=113.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
+|++++++..|-.. .+...+.+|++|++. +|++++|+|+||||||||+|+|+++.-
T Consensus 3 ~L~v~~l~~~~~~~-~~~~~~l~~vsl~i~----~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDE-SAPFRAVDRISYSVK----QGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCC-CccEEEEeeeEEEEC----CCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 68999999888311 011469999999998 899999999999999999999987531
Q ss_pred -----Hh-----hccccccccccc-----cch----------------------HHHHHHHcCCcc---ccccccchhhH
Q 040956 851 -----LA-----QLGCFVPCEMCV-----LSL----------------------ADTIFTRLGATD---RIMTGESTFLV 890 (1085)
Q Consensus 851 -----la-----qiG~~VPa~~a~-----i~~----------------------~d~I~trig~~D---~i~~~~Stf~~ 890 (1085)
+. .+| |||++... +.+ ++.++.++|..+ .+......++.
T Consensus 78 ~~~~~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 78 ISEKERRNLVGAEVA-MIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSG 156 (326)
T ss_pred CCHHHHHHHhCCCEE-EEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 00 234 67765310 111 122445566543 12233334444
Q ss_pred HhH---HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 891 ECT---ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 891 Em~---ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|. .+|++| +.+|.|||+|||++|+|...... ...++..+.++.+.++||+|||++++..++++..|.
T Consensus 157 Gq~QRv~iArAL--~~~P~llilDEPts~LD~~~~~~-il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm 227 (326)
T PRK11022 157 GMSQRVMIAMAI--ACRPKLLIADEPTTALDVTIQAQ-IIELLLELQQKENMALVLITHDLALVAEAAHKIIVM 227 (326)
T ss_pred HHHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 444 466666 89999999999999999776544 445666666656899999999999998888875544
No 202
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.60 E-value=8.7e-15 Score=167.33 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=115.2
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------------- 851 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------------- 851 (1085)
.++|+++|+...|-.. .+...+.+|++|++. +|++++|+|+||||||||+++|+++.-.
T Consensus 10 ~~~L~i~~l~~~~~~~-~~~~~~l~~vsl~i~----~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 10 DALLDVKDLRVTFSTP-DGDVTAVNDLNFSLR----AGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL 84 (330)
T ss_pred CceEEEeCeEEEEecC-CCCEEEEeeeEEEEc----CCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC
Confidence 3689999999888321 123468999999998 8999999999999999999999775411
Q ss_pred ------------hhcccccccccc-----ccchHH----------------------HHHHHcCCcc---c---cccccc
Q 040956 852 ------------AQLGCFVPCEMC-----VLSLAD----------------------TIFTRLGATD---R---IMTGES 886 (1085)
Q Consensus 852 ------------aqiG~~VPa~~a-----~i~~~d----------------------~I~trig~~D---~---i~~~~S 886 (1085)
.++| |||++.. .+.+.+ .++..+|..+ . ....+|
T Consensus 85 ~~~~~~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LS 163 (330)
T PRK09473 85 NLPEKELNKLRAEQIS-MIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFS 163 (330)
T ss_pred cCCHHHHHHHhcCCEE-EEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCC
Confidence 1344 6776531 111111 2334455432 1 122344
Q ss_pred hhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 887 tf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
..+.....+|++| +.+|+|||+|||++|+|......+ ..++..+.++.+.++||+|||+.++..++++..|.
T Consensus 164 gG~~QRv~IArAL--~~~P~llilDEPts~LD~~~~~~i-~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm 235 (330)
T PRK09473 164 GGMRQRVMIAMAL--LCRPKLLIADEPTTALDVTVQAQI-MTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM 235 (330)
T ss_pred HHHHHHHHHHHHH--HcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 4444444577777 899999999999999997765544 44666676656889999999999998888876554
No 203
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.60 E-value=8.2e-15 Score=157.92 Aligned_cols=158 Identities=22% Similarity=0.261 Sum_probs=105.8
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|+++++.+.|-. ..+...+++|++|... +|++++|+||||+|||||++++++..
T Consensus 2 l~~~~l~~~~~~-~~~~~~il~~vs~~i~----~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGH-GSLRKQVLFDINLEIN----PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccC-CCcceeEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhH
Confidence 677888776621 0012569999999987 78999999999999999999997642
Q ss_pred ---HHhhccccccccccc---cch----------------------HHHHHHHcCCccccccc---cchhhHHhHHHHHH
Q 040956 850 ---ILAQLGCFVPCEMCV---LSL----------------------ADTIFTRLGATDRIMTG---ESTFLVECTETASV 898 (1085)
Q Consensus 850 ---ilaqiG~~VPa~~a~---i~~----------------------~d~I~trig~~D~i~~~---~Stf~~Em~ela~i 898 (1085)
+...+| |+|+.... .++ ++.++.++|..+..... +|..+.....++++
T Consensus 77 ~~~~~~~i~-~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara 155 (220)
T TIGR02982 77 LVQLRRNIG-YIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA 155 (220)
T ss_pred HHHHHhheE-EEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 012344 56654211 111 22344555554433333 44444444457777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
| +.+|+++|||||++|.|...... ...++..+.+..++++|++||++++. .++++.
T Consensus 156 l--~~~p~illlDEP~~~LD~~~~~~-l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v 211 (220)
T TIGR02982 156 L--VHRPKLVLADEPTAALDSKSGRD-VVELMQKLAREQGCTILIVTHDNRIL-DVADRI 211 (220)
T ss_pred H--hcCCCEEEEeCCCCcCCHHHHHH-HHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEE
Confidence 7 89999999999999999766544 44566666654479999999999865 466643
No 204
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.59 E-value=6e-15 Score=158.70 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=103.0
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...|- .+...+++|++|.+. +|++++|+||||+||||||++++++.-
T Consensus 3 l~~~~l~~~~~---~~~~~~l~~i~~~i~----~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSYP---NQEIPALDNVSLTIR----AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEcC---CCCcccccceEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHH
Confidence 67888887771 112579999999997 799999999999999999999977531
Q ss_pred -Hhhccccccccccc--cchHHH---------------HHHHcCCccccc--------------cccchhhHHhHHHHHH
Q 040956 851 -LAQLGCFVPCEMCV--LSLADT---------------IFTRLGATDRIM--------------TGESTFLVECTETASV 898 (1085)
Q Consensus 851 -laqiG~~VPa~~a~--i~~~d~---------------I~trig~~D~i~--------------~~~Stf~~Em~ela~i 898 (1085)
...+| |+|+.... .++.+. ++..++..+.+. ..+|..+.....++++
T Consensus 76 ~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~a 154 (220)
T cd03245 76 LRRNIG-YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154 (220)
T ss_pred HHhhEE-EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHH
Confidence 11234 66665321 122222 233334332221 2344444444556666
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+ +.+|+|+|||||++|+|......+. .++..+.+ +.++|++||++++. .++++.
T Consensus 155 l--~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~--~~tii~~sH~~~~~-~~~d~v 208 (220)
T cd03245 155 L--LNDPPILLLDEPTSAMDMNSEERLK-ERLRQLLG--DKTLIIITHRPSLL-DLVDRI 208 (220)
T ss_pred H--hcCCCEEEEeCccccCCHHHHHHHH-HHHHHhcC--CCEEEEEeCCHHHH-HhCCEE
Confidence 6 8999999999999999977755444 44445543 37899999999986 466543
No 205
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=160.09 Aligned_cols=157 Identities=19% Similarity=0.162 Sum_probs=108.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|.++|+..-| ++..++++++|++. +|++++|+||||+|||||||+++++.-.
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 3 IKMESKNLNLWY-----GEKQALNDINLPIY----ENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred cEEEEEEeEEEE-----CCeeeeeceeEEEc----CCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence 678999998877 34579999999997 7999999999999999999999985311
Q ss_pred -----------hhccccccccccc--cchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
..+| |+|+.... .++.+.+ ...++.. +.....+|..+
T Consensus 74 ~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 152 (251)
T PRK14270 74 YDKDVDVVELRKRVG-MVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQ 152 (251)
T ss_pred ccccccHHHHHhheE-EEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 1133 55554211 2222222 2223321 11223344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....+++++ +.+|+++|||||++|.|+.....+ ..++..+.+ +.++|++||+.+.+..++++..+
T Consensus 153 ~qrv~laral--~~~p~llllDEP~~~LD~~~~~~l-~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 153 QQRLCIARTI--AVKPDVILMDEPTSALDPISTLKI-EDLMVELKK--EYTIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEE
Confidence 4455566667 899999999999999997765554 446656554 47899999999998888876443
No 206
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=6.9e-15 Score=165.17 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=108.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..|+++|+..-|-........++++++|++. +|++++|+||||||||||||+++++.-
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFK----KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEe----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc
Confidence 3589999988772100001259999999998 799999999999999999999976531
Q ss_pred --------Hhhcccccccccc----ccchHHH---------------------HHHHcCCc-ccc---ccccchhhHHhH
Q 040956 851 --------LAQLGCFVPCEMC----VLSLADT---------------------IFTRLGAT-DRI---MTGESTFLVECT 893 (1085)
Q Consensus 851 --------laqiG~~VPa~~a----~i~~~d~---------------------I~trig~~-D~i---~~~~Stf~~Em~ 893 (1085)
..++| |+|+... ..++.+. ++..++.. +.. ...+|..+....
T Consensus 81 ~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv 159 (289)
T PRK13645 81 KIKEVKRLRKEIG-LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRV 159 (289)
T ss_pred ccccHHHHhccEE-EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 01233 6666521 1122222 23334442 112 223444444444
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.++++| +.+|+|+|||||++|.|+.... ....++..+.+..++++|++||+.+.+..++++.
T Consensus 160 ~laral--~~~p~lLlLDEPt~~LD~~~~~-~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 160 ALAGII--AMDGNTLVLDEPTGGLDPKGEE-DFINLFERLNKEYKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred HHHHHH--HhCCCEEEEeCCcccCCHHHHH-HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 566666 8999999999999999977654 4555666665544789999999999988877754
No 207
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.2e-14 Score=179.90 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=108.8
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------H---hhcccc
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------L---AQLGCF 857 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------l---aqiG~~ 857 (1085)
.++|+++++...| ++..+++|++|.+. +|++++|+||||||||||||+|++..- + .++| |
T Consensus 310 ~~~l~~~~l~~~y-----~~~~il~~isl~i~----~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y 379 (638)
T PRK10636 310 NPLLKMEKVSAGY-----GDRIILDSIKLNLV----PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-Y 379 (638)
T ss_pred CceEEEEeeEEEe-----CCeeeeccceEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-E
Confidence 4689999999888 45679999999998 799999999999999999999987531 1 1344 6
Q ss_pred cccccc-----ccchH---------------HHHHHHcCCc-cccccccchhhHHh---HHHHHHHHhCCCCcEEEEeCC
Q 040956 858 VPCEMC-----VLSLA---------------DTIFTRLGAT-DRIMTGESTFLVEC---TETASVLQKATQDSLVILDEL 913 (1085)
Q Consensus 858 VPa~~a-----~i~~~---------------d~I~trig~~-D~i~~~~Stf~~Em---~ela~iL~~at~~sLvLLDEp 913 (1085)
+|+... ...++ ..++.+++.. +......+++++++ ..++++| +.+|.|+|||||
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l--~~~p~lLlLDEP 457 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIV--WQRPNLLLLDEP 457 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHH--hcCCCEEEEcCC
Confidence 666421 11112 1244455553 23334444555443 3466666 899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 914 grGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
++|.|......+ .+.|.+ .+.|+|++|||..++..++++..+.
T Consensus 458 t~~LD~~~~~~l----~~~L~~-~~gtvi~vSHd~~~~~~~~d~i~~l 500 (638)
T PRK10636 458 TNHLDLDMRQAL----TEALID-FEGALVVVSHDRHLLRSTTDDLYLV 500 (638)
T ss_pred CCCCCHHHHHHH----HHHHHH-cCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999886664433 333333 2568999999999999888765443
No 208
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=8.8e-15 Score=163.22 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=109.7
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|.++++...|- +...+.++++|++. +|++++|+||||+|||||||+|+++.
T Consensus 2 l~~~~l~~~~~----~~~~~l~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYP----DGTEALKGINFKAE----KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeC----CCCeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchH
Confidence 67888887772 23468999999998 79999999999999999999997642
Q ss_pred --HHhhccccccccc----cccchHHH---------------------HHHHcCCcc---ccccccchhhHHhHHHHHHH
Q 040956 850 --ILAQLGCFVPCEM----CVLSLADT---------------------IFTRLGATD---RIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 850 --ilaqiG~~VPa~~----a~i~~~d~---------------------I~trig~~D---~i~~~~Stf~~Em~ela~iL 899 (1085)
+..++| |+|+.. ...++.+. ++.++|..+ .....+|..+.....++++|
T Consensus 74 ~~~~~~i~-~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 74 LEVRKTVG-IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHHHhheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 112344 777653 11222222 333444432 22334455555555577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+.+|+|+|||||++|.|+.....+. .++..+.++ +.++|++||+.+.+..++++..+
T Consensus 153 --~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~ 209 (275)
T PRK13639 153 --AMKPEIIVLDEPTSGLDPMGASQIM-KLLYDLNKE-GITIIISTHDVDLVPVYADKVYV 209 (275)
T ss_pred --hcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 8999999999999999987765544 455566554 88999999999998888776433
No 209
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.2e-14 Score=151.68 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=113.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh---------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL--------------------- 847 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~--------------------- 847 (1085)
+.++++++..-| |..-+++||+|.+. ++.+.+|+||+|||||||||++-.
T Consensus 6 ~~~~~~~l~~yY-----g~~~aL~~i~l~i~----~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY-----GDKHALKDINLDIP----KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE-----CchhhhccCceecc----CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeec
Confidence 578999998877 67899999999998 788999999999999999999832
Q ss_pred -------HHHHhhcccccccc--ccccchHHHHHH--H-------------------cC----Cccccc---cccchhhH
Q 040956 848 -------AVILAQLGCFVPCE--MCVLSLADTIFT--R-------------------LG----ATDRIM---TGESTFLV 890 (1085)
Q Consensus 848 -------i~ilaqiG~~VPa~--~a~i~~~d~I~t--r-------------------ig----~~D~i~---~~~Stf~~ 890 (1085)
+.+..++| .|.+. .+.++++|+|-- | .. ..|++. .++|....
T Consensus 77 ~~~~~d~~~lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 77 YDPKVDVVELRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred cCCCCCHHHHHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 22445677 45443 244556665321 1 01 123332 23444444
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
...=+|++| |.+|+++|||||++.+||.....| ..++..|.+ .-|+++|||.++-+..+.++..+
T Consensus 156 QRLcIARal--Av~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk~--~yTIviVTHnmqQAaRvSD~taF 220 (253)
T COG1117 156 QRLCIARAL--AVKPEVLLMDEPTSALDPISTLKI-EELITELKK--KYTIVIVTHNMQQAARVSDYTAF 220 (253)
T ss_pred HHHHHHHHH--hcCCcEEEecCcccccCchhHHHH-HHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhh
Confidence 444588888 999999999999999998886654 445556653 57999999999999999887544
No 210
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.59 E-value=1.1e-14 Score=174.41 Aligned_cols=214 Identities=18% Similarity=0.225 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccce---ecCCCCCCcccCCCCCCEEEEEcceee
Q 040956 723 DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPL---ILPQSKNPAVRQDNGGPVLKIKGLWHP 799 (1085)
Q Consensus 723 ~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~---~~~~~~~~~~~~~~~~~~l~ik~lrhp 799 (1085)
..+.+..++.++...+..-.++.+.+..++-+.+-......... .+|. +.+.. ...++++++++++.+.
T Consensus 259 ~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~--~~~~~~~f~~~~------~~~g~~vl~~~~~~~~ 330 (530)
T COG0488 259 ELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEE--GKPLAFRFPPPG------KRLGKLVLEFENVSKG 330 (530)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccc--cccceeeccCCc------ccCCCeeEEEeccccc
Confidence 34455667777777776667888888888888864222211100 1111 11110 1234579999999998
Q ss_pred eeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------HH---hhcccccccccccc----
Q 040956 800 FALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------IL---AQLGCFVPCEMCVL---- 865 (1085)
Q Consensus 800 ~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------il---aqiG~~VPa~~a~i---- 865 (1085)
|- ++..+..+++|.+. +|+.++|+||||+|||||||+|++.. .. .++| |+++....+
T Consensus 331 y~----~~~~l~~~~s~~i~----~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~ 401 (530)
T COG0488 331 YD----GGRLLLKDLSFRID----RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDK 401 (530)
T ss_pred cC----CCceeecCceEEec----CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccC
Confidence 82 23689999999997 78999999999999999999995432 11 1244 556544322
Q ss_pred chHHHH---------------HHHcCC-ccccccccchhhHH-hHH--HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 040956 866 SLADTI---------------FTRLGA-TDRIMTGESTFLVE-CTE--TASVLQKATQDSLVILDELGRGTSTFDGYAIA 926 (1085)
Q Consensus 866 ~~~d~I---------------~trig~-~D~i~~~~Stf~~E-m~e--la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia 926 (1085)
+++|.+ +.+++. .+.......+++++ ..+ +|.++ +.+|.|+||||| ||++|-. +
T Consensus 402 t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll--~~~pNvLiLDEP---TNhLDi~--s 474 (530)
T COG0488 402 TVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL--LQPPNLLLLDEP---TNHLDIE--S 474 (530)
T ss_pred cHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHh--ccCCCEEEEcCC---CccCCHH--H
Confidence 344433 334442 23333444455543 333 55555 899999999999 7777744 3
Q ss_pred HHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 927 ~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
...|+..+.....++||||||..+++.++++..+
T Consensus 475 ~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~ 508 (530)
T COG0488 475 LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWL 508 (530)
T ss_pred HHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEE
Confidence 3345555555688999999999999998865433
No 211
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.4e-14 Score=159.33 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=108.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|.++++...| ++..++++++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 3 ~~l~~~~l~~~~-----~~~~il~~~s~~i~----~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 3 PKIKIRGVNFFY-----HKHQVLKNINMDFP----ERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73 (251)
T ss_pred ceEEEEEEEEEE-----CCeeEecceEEEEc----CCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEc
Confidence 578899998877 34579999999997 7999999999999999999999875321
Q ss_pred -----------hhccccccccccc--cchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
..+| |+|+.... .++.+.+ ...++.. +.....+|..+
T Consensus 74 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 74 YSPNLDVVNLRKRVG-MVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQ 152 (251)
T ss_pred cccccChHHhhceEE-EEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHH
Confidence 1122 55554321 1222222 1122221 11222344544
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|+++|||||++|+|+.....+ ..++..+. + ++|+|++||+.+++..++++..+
T Consensus 153 ~qrv~laral--~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~ 218 (251)
T PRK14249 153 QQRLCIARVL--AIEPEVILMDEPCSALDPVSTMRI-EELMQELK-Q-NYTIAIVTHNMQQAARASDWTGF 218 (251)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEE
Confidence 4455577777 899999999999999997765544 44666663 3 78999999999999888876543
No 212
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=159.88 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=106.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|.++++++.| +...++++++|++. +|++++|+||||+|||||||+++++..
T Consensus 3 ~~l~~~~l~~~~-----~~~~~l~~~sl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~ 73 (251)
T PRK14251 3 NIISAKDVHLSY-----GNYEALHGISLDFE----EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI 73 (251)
T ss_pred ceEEEEeeEEEE-----CCeeeeeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence 468999999888 34579999999998 799999999999999999999988642
Q ss_pred ----------Hhhccccccccccc--cchHHH----------------------HHHHcCCc-------cccccccchhh
Q 040956 851 ----------LAQLGCFVPCEMCV--LSLADT----------------------IFTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a~--i~~~d~----------------------I~trig~~-------D~i~~~~Stf~ 889 (1085)
...+| |+|++... .++.+. ++..++.. +.....+|..+
T Consensus 74 ~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 152 (251)
T PRK14251 74 YGSKMDLVELRKEVG-MVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQ 152 (251)
T ss_pred ccccchHHHhhccEE-EEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHH
Confidence 00122 45543211 122222 22233331 11222344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....++++| +.+|+++|||||++|.|+..... ...++..+. + +.++|++||+.+++..++++..
T Consensus 153 ~qr~~laral--~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 153 QQRICIARAL--AVRPKVVLLDEPTSALDPISSSE-IEETLMELK-H-QYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred HHHHHHHHHH--hcCCCEEEecCCCccCCHHHHHH-HHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEE
Confidence 4444566666 89999999999999999766544 445555553 3 6899999999999888777543
No 213
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.3e-14 Score=154.89 Aligned_cols=165 Identities=19% Similarity=0.148 Sum_probs=113.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh---------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ--------------- 853 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq--------------- 853 (1085)
..++++|+.+-|-... .-..+.|+|+|++. +|++++|+|++|||||||.|+++++.--.+
T Consensus 2 ~~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~----~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVYGGGK-FAFHALNNVSLEIE----RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEecCCc-chhhhhcceeEEec----CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc
Confidence 4689999998883111 01149999999998 899999999999999999999987652111
Q ss_pred ------cccccccccc-c--------------cch---------HHHHHHHcCCcccccc----ccchhhHHhHHHHHHH
Q 040956 854 ------LGCFVPCEMC-V--------------LSL---------ADTIFTRLGATDRIMT----GESTFLVECTETASVL 899 (1085)
Q Consensus 854 ------iG~~VPa~~a-~--------------i~~---------~d~I~trig~~D~i~~----~~Stf~~Em~ela~iL 899 (1085)
.--+|+++.. . +.+ ...++..+|....... .+|........+|++|
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh
Confidence 0012333210 0 001 2346667776554432 2333333333366666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|.++|+|||++.+|..- .+-.+.++.++.++.+-|.||+|||..++..+|++..|.
T Consensus 157 --~~~PklLIlDEptSaLD~si-Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 157 --IPEPKLLILDEPTSALDVSV-QAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215 (252)
T ss_pred --ccCCCEEEecCchhhhcHHH-HHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeee
Confidence 89999999999977777554 344667888888888899999999999999999986654
No 214
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.5e-14 Score=160.34 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=109.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|++++++..| ++..+.+|++|++. +|++++|+||||+|||||||+++++.-.
T Consensus 9 ~~l~i~~v~~~~-----~~~~il~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 79 (264)
T PRK14243 9 TVLRTENLNVYY-----GSFLAVKNVWLDIP----KNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL 79 (264)
T ss_pred eEEEEeeeEEEE-----CCEEEeecceEEEc----CCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEc
Confidence 579999999888 34579999999998 7999999999999999999999875310
Q ss_pred -----------hhccccccccccc--cchHHHH--------------------HHHcCCc-------cccccccchhhHH
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADTI--------------------FTRLGAT-------DRIMTGESTFLVE 891 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~I--------------------~trig~~-------D~i~~~~Stf~~E 891 (1085)
.++| |+|+.... .++.+.+ +..++.. +.....+|..+..
T Consensus 80 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 80 YAPDVDPVEVRRRIG-MVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ 158 (264)
T ss_pred cccccChHHHhhhEE-EEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH
Confidence 1133 55553211 1222222 1222221 1112234444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
...++++| +.+|+++|||||++|+|+..... ...++..+.+ +.++|++||+.+.+..++++..+.
T Consensus 159 rv~laral--~~~p~lllLDEPt~~LD~~~~~~-l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 159 RLCIARAI--AVQPEVILMDEPCSALDPISTLR-IEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFF 223 (264)
T ss_pred HHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEE
Confidence 55577777 89999999999999999777554 4455666644 479999999999999888865444
No 215
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.3e-14 Score=159.63 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=109.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..|+++|+...| ++..+++|++|.+. +|++++|+||||||||||||+++++.-
T Consensus 3 ~~l~~~nl~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i 73 (252)
T PRK14256 3 NKVKLEQLNVHF-----GKNHAVKDVSMDFP----ENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 (252)
T ss_pred cEEEEEEEEEEe-----CCeeEEecceEEEc----CCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEc
Confidence 468999999888 34579999999998 799999999999999999999988631
Q ss_pred ----------Hhhcccccccccc---ccchHHH----------------------HHHHcCCcc-------ccccccchh
Q 040956 851 ----------LAQLGCFVPCEMC---VLSLADT----------------------IFTRLGATD-------RIMTGESTF 888 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a---~i~~~d~----------------------I~trig~~D-------~i~~~~Stf 888 (1085)
..++| |+|++.. ..++.+. ++..++... .....+|..
T Consensus 74 ~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14256 74 YDRGVDPVSIRRRVG-MVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG 152 (252)
T ss_pred ccccCChHHhhccEE-EEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHH
Confidence 01133 5665421 1122222 223344321 112334555
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+.....++++| +.+|+++|||||++|.|...... ...++..+.+ +.++|++||+.+++..++++..+
T Consensus 153 ~~qrl~laral--~~~p~llllDEP~~gLD~~~~~~-l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 153 QQQRLCIARTI--AVKPEVILMDEPASALDPISTLK-IEELIEELKE--KYTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred HHHHHHHHHHH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEE
Confidence 54455577777 89999999999999999766544 4456666654 57899999999998888876443
No 216
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.59 E-value=6.6e-15 Score=156.09 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=97.3
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------H
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------L 851 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------l 851 (1085)
+++++...| ++..++++++|.+. +|++++|+||||+|||||+|++++..- .
T Consensus 2 ~~~~l~~~~-----~~~~~l~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 2 AARNLACSR-----GERMLFEGLSFTLN----AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred EEEEEEEEE-----CCEEEEeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhh
Confidence 566776666 34678999999998 799999999999999999999977531 1
Q ss_pred hhcccccccccc---ccchHH-----------------HHHHHcCCccccccccchhhH---HhHHHHHHHHhCCCCcEE
Q 040956 852 AQLGCFVPCEMC---VLSLAD-----------------TIFTRLGATDRIMTGESTFLV---ECTETASVLQKATQDSLV 908 (1085)
Q Consensus 852 aqiG~~VPa~~a---~i~~~d-----------------~I~trig~~D~i~~~~Stf~~---Em~ela~iL~~at~~sLv 908 (1085)
.++| |+|+... ..++.+ .++..+|..+.......+++. ....+++++ +.+|.++
T Consensus 73 ~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~p~ll 149 (198)
T TIGR01189 73 RNIL-YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLW--LSRAPLW 149 (198)
T ss_pred hheE-EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHH--hcCCCEE
Confidence 2334 5665321 122222 234445554333333333443 333456666 8999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
|||||++|.|..... ....++..+.++ +.++|++||++..
T Consensus 150 llDEPt~~LD~~~~~-~l~~~l~~~~~~-~~tii~~sH~~~~ 189 (198)
T TIGR01189 150 ILDEPTTALDKAGVA-LLAGLLRAHLAR-GGIVLLTTHQDLG 189 (198)
T ss_pred EEeCCCcCCCHHHHH-HHHHHHHHHHhC-CCEEEEEEccccc
Confidence 999999999976544 445566666554 7899999999853
No 217
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.6e-14 Score=160.50 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=108.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++++.+.| ++..++++++|++. +|++++|+||||+|||||||+++++.-.
T Consensus 19 ~~l~~~nl~~~~-----~~~~il~~vsl~i~----~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 19 IALSTKDLHVYY-----GKKEAIKGIDMQFE----KNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred eEEEEeeEEEEE-----CCeeeEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 689999999888 34679999999998 7999999999999999999999886421
Q ss_pred ----------h-hccccccccccc--cchHHHH----------------------HHHcCCc----ccccc---ccchhh
Q 040956 852 ----------A-QLGCFVPCEMCV--LSLADTI----------------------FTRLGAT----DRIMT---GESTFL 889 (1085)
Q Consensus 852 ----------a-qiG~~VPa~~a~--i~~~d~I----------------------~trig~~----D~i~~---~~Stf~ 889 (1085)
. .+| |+|+.... .++.+.+ +..++.. +.+.. .+|..+
T Consensus 90 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 90 NRKEINVYEMRKHIG-MVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQ 168 (267)
T ss_pred ccccCChHHHhcceE-EEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHH
Confidence 1 133 66654321 1233322 2223321 11122 233333
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
.....++++| +.+|+++|||||++|.|+..... ...++..+. + +.++|++||+.+++..++++..+.
T Consensus 169 ~qrl~laral--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l 235 (267)
T PRK14237 169 QQRLCIARAI--AVKPDILLMDEPASALDPISTMQ-LEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFF 235 (267)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEE
Confidence 3334466666 89999999999999999766544 445556663 3 679999999999988888765443
No 218
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=6.7e-15 Score=150.27 Aligned_cols=148 Identities=24% Similarity=0.255 Sum_probs=97.1
Q ss_pred EEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc-ccccccccccchHHHH
Q 040956 793 IKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG-CFVPCEMCVLSLADTI 871 (1085)
Q Consensus 793 ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG-~~VPa~~a~i~~~d~I 871 (1085)
++++.+.| .+..+.++++|.+. +|++++|+||||+||||||++++++.- ..-| .++............+
T Consensus 2 ~~~~~~~~-----~~~~~l~~~~~~i~----~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRY-----GGRTALDNVSLTLK----AGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEe-----CCeeeEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHH
Confidence 34455555 23468899999987 789999999999999999999987532 2222 1111111000001112
Q ss_pred HHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 872 FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 872 ~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
...++... .+|..+.....+++++ +.+++++|||||++|+|......+. .++..+.+. ++++|++||+++++
T Consensus 72 ~~~i~~~~----qlS~G~~~r~~l~~~l--~~~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 72 RRRIGYVP----QLSGGQRQRVALARAL--LLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEE-GRTVIIVTHDPELA 143 (157)
T ss_pred HhceEEEe----eCCHHHHHHHHHHHHH--hcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHH
Confidence 22222111 1666666566677777 8899999999999999977655444 455555554 68999999999999
Q ss_pred HhhcCcc
Q 040956 952 KEFASHP 958 (1085)
Q Consensus 952 ~~~~~~~ 958 (1085)
..++++.
T Consensus 144 ~~~~d~i 150 (157)
T cd00267 144 ELAADRV 150 (157)
T ss_pred HHhCCEE
Confidence 8876543
No 219
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=7.5e-15 Score=177.01 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=112.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|++++++..| ++..+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 3 ~~l~~~~l~~~~-----~~~~il~~isl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 3 PYLSFDGIGKTF-----PGVKALDDISFDCR----AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST 73 (501)
T ss_pred ceEEEeeeEEEE-----CCEEEEeeeeEEEe----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH
Confidence 579999999888 34579999999998 799999999999999999999977531
Q ss_pred ----Hhhcccccccccc---ccchHHH------------------------HHHHcCCcccccc---ccchhhHHhHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLADT------------------------IFTRLGATDRIMT---GESTFLVECTETA 896 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d~------------------------I~trig~~D~i~~---~~Stf~~Em~ela 896 (1085)
-.++| |||+... .+++.+. ++.++|..+.... .+|..+.....++
T Consensus 74 ~~~~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 74 TAALAAGVA-IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHHhCCEE-EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 11344 6666421 1122222 3444554433333 3444444444566
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
++| +.+|+++|||||++|.|+.....+ ..++..+.++ |.++|++||+.+++..++++..+.
T Consensus 153 ral--~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l 213 (501)
T PRK11288 153 KAL--ARNARVIAFDEPTSSLSAREIEQL-FRVIRELRAE-GRVILYVSHRMEEIFALCDAITVF 213 (501)
T ss_pred HHH--HhCCCEEEEcCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 666 899999999999999997765544 4566666554 889999999999998888765443
No 220
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=159.10 Aligned_cols=156 Identities=20% Similarity=0.148 Sum_probs=106.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++++++-| ++..+++|++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 5 ~~i~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 75 (253)
T PRK14261 5 IILSTKNLNLWY-----GEKHALYDITISIP----KNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI 75 (253)
T ss_pred ceEEEeeeEEEE-----CCeeeeeeeEEEEC----CCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 679999998877 35679999999998 7999999999999999999999864210
Q ss_pred -----------hhccccccccccc--cchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
..+| |+|+.... .++.+.+ +.+++.. +.....+|..+
T Consensus 76 ~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 76 MDSGADVVALRRKIG-MVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ 154 (253)
T ss_pred cccccchhhhhceEE-EEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence 1122 55554311 1222222 1222221 11122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....++++| +.+|+|+|||||++|.|......+ ..++..+.+ +.++|++||+.+.+..++++..
T Consensus 155 ~qrv~laral--~~~p~lllLDEP~~gLD~~~~~~l-~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~ 219 (253)
T PRK14261 155 QQRLCIARTL--AVNPEVILMDEPCSALDPIATAKI-EDLIEDLKK--EYTVIIVTHNMQQAARVSDYTG 219 (253)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhh--CceEEEEEcCHHHHHhhCCEEE
Confidence 4444566666 899999999999999997765544 455555543 5799999999999887776543
No 221
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=159.86 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=105.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|++++++..| ++..++++++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 2 ~~l~~~~l~~~~-----~~~~~l~~i~~~i~----~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 2 PIIEIENFSAYY-----GEKKAVKNVTMKIF----KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred ceEEEEeeEEEe-----CCceeEeeeeEeec----CCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 468999999888 34579999999998 799999999999999999999986531
Q ss_pred ----------Hhhcccccccccc--ccchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 851 ----------LAQLGCFVPCEMC--VLSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a--~i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
...+| |+|+... ..++.+.+ +..+|.. +.....+|..+
T Consensus 73 ~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 151 (250)
T PRK14262 73 YDPQLDVTEYRKKVG-MVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151 (250)
T ss_pred ccchhhHHHhhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHH
Confidence 11233 5555421 12222322 1122221 11122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.....++++| +.+|+++|||||++|.|......+ ..++..+. + +.++|++||+.+.+..++++.
T Consensus 152 ~qr~~la~al--~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 152 QQRLCIARAL--AVEPEVILLDEPTSALDPIATQRI-EKLLEELS-E-NYTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred HHHHHHHHHH--hCCCCEEEEeCCccccCHHHHHHH-HHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEE
Confidence 4444566666 899999999999999997765544 45555554 3 679999999999887777654
No 222
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.58 E-value=1.4e-14 Score=159.07 Aligned_cols=157 Identities=22% Similarity=0.184 Sum_probs=108.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-HHhhc-------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-ILAQL------------- 854 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-ilaqi------------- 854 (1085)
++|.++++.+.| ++..++++++|++. +|++++|+||||+|||||||+|+++. +-..-
T Consensus 6 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~ 76 (252)
T CHL00131 6 PILEIKNLHASV-----NENEILKGLNLSIN----KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDL 76 (252)
T ss_pred ceEEEEeEEEEe-----CCEEeeecceeEEc----CCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccC
Confidence 579999999888 34579999999998 79999999999999999999998852 11111
Q ss_pred --------c-ccccccccc---cch----------------------------HHHHHHHcCCcc----cccc-ccchhh
Q 040956 855 --------G-CFVPCEMCV---LSL----------------------------ADTIFTRLGATD----RIMT-GESTFL 889 (1085)
Q Consensus 855 --------G-~~VPa~~a~---i~~----------------------------~d~I~trig~~D----~i~~-~~Stf~ 889 (1085)
| .|+|+.... .+. +..++..+|..+ .... .+|..+
T Consensus 77 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 77 EPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred ChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 1 134332110 000 122344455432 1112 356655
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh-cCcc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF-ASHP 958 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~-~~~~ 958 (1085)
.....+|++| +.+|+++|||||++|+|......+. .++..+.++ +.++|++||+.+++..+ +++.
T Consensus 157 ~qrv~la~al--~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-g~tii~~tH~~~~~~~~~~d~i 222 (252)
T CHL00131 157 KKRNEILQMA--LLDSELAILDETDSGLDIDALKIIA-EGINKLMTS-ENSIILITHYQRLLDYIKPDYV 222 (252)
T ss_pred HHHHHHHHHH--HcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHHhhhCCEE
Confidence 5556677777 8999999999999999977755544 555566554 88999999999998765 5543
No 223
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.8e-14 Score=158.38 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=107.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--H---------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--L--------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--l--------------- 851 (1085)
++|+++++...| +...++++++|.+. +|++++|+||||+|||||||+|+++.- .
T Consensus 4 ~~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 74 (252)
T PRK14255 4 KIITSSDVHLFY-----GKFEALKGIDLDFN----QNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI 74 (252)
T ss_pred ceEEEEeEEEEE-----CCeeEEecceEEEc----CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEc
Confidence 678999999887 34679999999997 799999999999999999999987521 0
Q ss_pred -----------hhccccccccccc--cchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
..+| |+|++... .++.+.+ +.+++.. +.....+|..+
T Consensus 75 ~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 75 YAPNEDVVQLRKQVG-MVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQ 153 (252)
T ss_pred ccccccHHHhcCeEE-EEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHH
Confidence 1133 56654321 1222222 1122211 11122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....++++| +.+|+++|||||++|.|......+ ..++..+.+ +.++|++||+.+++..++++..
T Consensus 154 ~qrv~laral--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 154 QQRVCIARVL--AVKPDVILLDEPTSALDPISSTQI-ENMLLELRD--QYTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHh--CCEEEEEECCHHHHHHhCCEEE
Confidence 4445567777 899999999999999998775554 445555543 4799999999999888877543
No 224
>PRK13409 putative ATPase RIL; Provisional
Probab=99.58 E-value=8.5e-15 Score=179.07 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=114.5
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------hhcccccc
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------AQLGCFVP 859 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------aqiG~~VP 859 (1085)
.++++++++.+.| + .+.+++++|.+. +|++++|+||||+|||||||+++++.-. ..+| |+|
T Consensus 338 ~~~l~~~~ls~~~-----~-~~~l~~~s~~i~----~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~ 406 (590)
T PRK13409 338 ETLVEYPDLTKKL-----G-DFSLEVEGGEIY----EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKP 406 (590)
T ss_pred ceEEEEcceEEEE-----C-CEEEEecceEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-Eec
Confidence 3689999999877 2 345788898887 7999999999999999999999875311 1234 667
Q ss_pred cccc---ccchH----------------HHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCCC
Q 040956 860 CEMC---VLSLA----------------DTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLVILDELGRGT 917 (1085)
Q Consensus 860 a~~a---~i~~~----------------d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrGT 917 (1085)
+... ..++. +.++.++|..+......++++.+ ...+|++| +.+|+|+|||||++|+
T Consensus 407 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL--~~~p~llLLDEPt~~L 484 (590)
T PRK13409 407 QYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACL--SRDADLYLLDEPSAHL 484 (590)
T ss_pred ccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCC
Confidence 6421 12222 23455566554444444445544 33466666 8999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 918 s~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
|...... ...++..+.++.+.++|++|||.+++..++++..+.
T Consensus 485 D~~~~~~-l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 485 DVEQRLA-VAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred CHHHHHH-HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9777555 445666676655889999999999999888875444
No 225
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1e-14 Score=156.45 Aligned_cols=138 Identities=21% Similarity=0.176 Sum_probs=94.7
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------------Hhhcccccccccc---c
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------------LAQLGCFVPCEMC---V 864 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------------laqiG~~VPa~~a---~ 864 (1085)
|++|++. + ++++|+||||+|||||||+++++.- ...+| |+|+... .
T Consensus 16 ~vsl~i~----~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~ 89 (214)
T cd03297 16 KIDFDLN----E-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG-LVFQQYALFPH 89 (214)
T ss_pred CceEEEc----c-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE-EEecCCccCCC
Confidence 9999987 7 8999999999999999999976531 01233 6665431 1
Q ss_pred cchHH-------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 040956 865 LSLAD-------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922 (1085)
Q Consensus 865 i~~~d-------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg 922 (1085)
.++.+ .++.++|..+.... .+|..+.....+++++ +.+|+++|||||++|+|....
T Consensus 90 ~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~p~llllDEPt~~LD~~~~ 167 (214)
T cd03297 90 LNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL--AAQPELLLLDEPFSALDRALR 167 (214)
T ss_pred CCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHH--hcCCCEEEEcCCcccCCHHHH
Confidence 22222 23445555433333 3444444444566666 899999999999999997665
Q ss_pred HHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 923 ~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.. ...++..+.++.++++|++||+.+++..++++..
T Consensus 168 ~~-l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 203 (214)
T cd03297 168 LQ-LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIV 203 (214)
T ss_pred HH-HHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEE
Confidence 44 4456666665447899999999999888777543
No 226
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2e-14 Score=157.76 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=106.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
.|+++++...| ++..++++++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 3 KFNIENLDLFY-----GENQALKSINLPIP----ARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred eEEEeccEEEE-----CCeeeeecceEEec----CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence 57899998887 34679999999998 7999999999999999999999875321
Q ss_pred ---------hhccccccccccc--cchHHHHH----------------------HHcCCcc-------ccccccchhhHH
Q 040956 852 ---------AQLGCFVPCEMCV--LSLADTIF----------------------TRLGATD-------RIMTGESTFLVE 891 (1085)
Q Consensus 852 ---------aqiG~~VPa~~a~--i~~~d~I~----------------------trig~~D-------~i~~~~Stf~~E 891 (1085)
..+| |+|+.... .++.+.+. ..++..+ .....+|..+..
T Consensus 74 ~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 74 GNIDVADLRIKVG-MVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred cccchHHHHhhee-EEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHH
Confidence 1133 56554321 22233221 1122111 111234444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
...++++| +.+|+|+|||||++|.|..... ....++..+.+ +.++|++||+.+++..++++..+
T Consensus 153 rv~laral--~~~p~llllDEP~~~LD~~~~~-~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~ 216 (249)
T PRK14253 153 RLCIARTI--AMEPDVILMDEPTSALDPIATH-KIEELMEELKK--NYTIVIVTHSMQQARRISDRTAF 216 (249)
T ss_pred HHHHHHHH--HcCCCEEEEeCCCccCCHHHHH-HHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEE
Confidence 45577777 8999999999999999976544 44456666643 57999999999998888876433
No 227
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.7e-14 Score=159.67 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=108.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++++++.| ++..+++|++|.+. +|++++|+||||+||||||++++++.-.
T Consensus 6 ~~l~~~nl~~~~-----~~~~il~~is~~i~----~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 6 PAIKVNNLSFYY-----DTQKILEGVSMEIY----QSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNI 76 (261)
T ss_pred ceEEEeeEEEEe-----CCeeEeeceEEEEc----CCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEh
Confidence 479999999888 34578999999998 7999999999999999999999876321
Q ss_pred -----------hhcccccccccc--ccchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMC--VLSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a--~i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
..+| |+|++.. ..++.+.+ +..++.. +.....+|..+
T Consensus 77 ~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 77 YERRVNLNRLRRQVS-MVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQ 155 (261)
T ss_pred hccccchHHhhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 0122 4444321 12222222 1222221 11112344545
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
.....++++| +.+|+++|||||++|.|...... ...++..+....+.++|++||+++++..++++..+.
T Consensus 156 ~qrv~laral--~~~p~vllLDEP~~~LD~~~~~~-l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 156 QQRLCIARAL--AVKPKVLLMDEPCFGLDPIASMK-VESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224 (261)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 4455577777 89999999999999999666443 444555554434789999999999999888765443
No 228
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.58 E-value=5.4e-15 Score=177.12 Aligned_cols=152 Identities=22% Similarity=0.265 Sum_probs=110.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------HHh--hccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------ILA--QLGCFV 858 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------ila--qiG~~V 858 (1085)
.+|.+.++.+.| +++.+.++++|.+. +|+.++|+|+||+|||||||+|++.. ... .+| |+
T Consensus 2 ~~i~~~~ls~~~-----g~~~l~~~~~l~~~----~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~-~l 71 (530)
T COG0488 2 SMITLENLSLAY-----GDRPLLENVSLTLN----PGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVG-YL 71 (530)
T ss_pred ceEEEeeeEEee-----CCceeecCCcceeC----CCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEE-Ee
Confidence 468999999998 67899999999998 78999999999999999999997643 111 244 55
Q ss_pred ccccccc---chHH---------------------------------------------------HHHHHcCCccccccc
Q 040956 859 PCEMCVL---SLAD---------------------------------------------------TIFTRLGATDRIMTG 884 (1085)
Q Consensus 859 Pa~~a~i---~~~d---------------------------------------------------~I~trig~~D~i~~~ 884 (1085)
+++.... +++| .++..+|..+. ...
T Consensus 72 ~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~ 150 (530)
T COG0488 72 SQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRP 150 (530)
T ss_pred CCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCc
Confidence 5543211 2222 12223344433 445
Q ss_pred cchhhHHh---HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 885 ESTFLVEC---TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 885 ~Stf~~Em---~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
.++++++. ..+|++| ..+|+++||||| ||++|..+|.| +-++|... ..++|+||||..+++.++++.
T Consensus 151 ~~~LSGG~r~Rv~LA~aL--~~~pDlLLLDEP---TNHLD~~~i~W-Le~~L~~~-~gtviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 151 VSSLSGGWRRRVALARAL--LEEPDLLLLDEP---TNHLDLESIEW-LEDYLKRY-PGTVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred hhhcCHHHHHHHHHHHHH--hcCCCEEEEcCC---CcccCHHHHHH-HHHHHHhC-CCcEEEEeCCHHHHHHHhhhe
Confidence 55666553 3477788 899999999999 99999888777 44444444 459999999999999988753
No 229
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.8e-14 Score=160.84 Aligned_cols=158 Identities=20% Similarity=0.220 Sum_probs=109.5
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------- 850 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------- 850 (1085)
.++|.++++.+-| ++..+++|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 19 ~~~l~i~nl~~~~-----~~~~il~~vs~~i~----~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 19 APAMAAVNLTLGF-----AGKTVLDQVSMGFP----ARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS 89 (276)
T ss_pred CcEEEEeeEEEEE-----CCEEEeeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEE
Confidence 4789999999988 45689999999998 799999999999999999999987532
Q ss_pred ----------Hhhccccccccccc--cchHHHH----------------------HHHcCCcc----cc---ccccchhh
Q 040956 851 ----------LAQLGCFVPCEMCV--LSLADTI----------------------FTRLGATD----RI---MTGESTFL 889 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a~--i~~~d~I----------------------~trig~~D----~i---~~~~Stf~ 889 (1085)
...+| |+|+.... .++.+.+ +..++..+ .+ ...+|..+
T Consensus 90 i~~~~~~~~~~~~i~-~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq 168 (276)
T PRK14271 90 IFNYRDVLEFRRRVG-MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168 (276)
T ss_pred ccccchhHHHhhheE-EeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHH
Confidence 11233 66654311 2222222 22333321 11 22344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|.|+|||||++|.|...... ...++..+.+ ++++|++||+.+++..++++..+
T Consensus 169 ~qrl~LAral--~~~p~lllLDEPt~~LD~~~~~~-l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~ 234 (276)
T PRK14271 169 QQLLCLARTL--AVNPEVLLLDEPTSALDPTTTEK-IEEFIRSLAD--RLTVIIVTHNLAQAARISDRAAL 234 (276)
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4444567777 89999999999999999766544 3445555543 47999999999998888875433
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.58 E-value=1e-14 Score=176.71 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=108.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-Hh-----------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-LA----------------- 852 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-la----------------- 852 (1085)
|+++|+.+.| ++..+++|++|.+. +|++++|+||||||||||||+++++.. -.
T Consensus 1 l~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKF-----DGKEVLKNISFTIE----EGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEE-----CCeEeeeceeEEEc----CCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccc
Confidence 3567777777 34579999999998 799999999999999999999988630 00
Q ss_pred --------------------------------------hcccccccc-cc---ccchHH---------------------
Q 040956 853 --------------------------------------QLGCFVPCE-MC---VLSLAD--------------------- 869 (1085)
Q Consensus 853 --------------------------------------qiG~~VPa~-~a---~i~~~d--------------------- 869 (1085)
.+| |||+. .. ..+..+
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 150 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIA-IMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAV 150 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEE-EEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 123 55553 11 112222
Q ss_pred HHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEe
Q 040956 870 TIFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATH 946 (1085)
Q Consensus 870 ~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH 946 (1085)
.++..+|..+... ..+|..+.....+|++| +.+|+++|||||++|.|+.....+ ..++..+.++.|.++|++||
T Consensus 151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al--~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQL--AKEPFLFLADEPTGTLDPQTAKLV-HNALEEAVKASGISMVLTSH 227 (520)
T ss_pred HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHH--hcCCCEEEeeCCcccCCHHHHHHH-HHHHHHHHHhcCcEEEEEeC
Confidence 2344455543333 33444444444577777 899999999999999997775544 44666665545889999999
Q ss_pred chhHHHhhcCccce
Q 040956 947 YHPLTKEFASHPHV 960 (1085)
Q Consensus 947 ~~el~~~~~~~~~V 960 (1085)
+.+++..++++..+
T Consensus 228 d~~~~~~~~d~i~~ 241 (520)
T TIGR03269 228 WPEVIEDLSDKAIW 241 (520)
T ss_pred CHHHHHHhcCEEEE
Confidence 99999887776443
No 231
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.58 E-value=9.4e-15 Score=168.59 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=105.8
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------------Hhhccccccc
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------------LAQLGCFVPC 860 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------------laqiG~~VPa 860 (1085)
+...+.+|++|++. +|++++|+||||||||||||+|+++.- ..++| |||+
T Consensus 4 ~~~~~l~~vs~~i~----~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~-~v~Q 78 (363)
T TIGR01186 4 GGKKGVNDADLAIA----KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIG-MVFQ 78 (363)
T ss_pred CCceeEEeeEEEEc----CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEE-EEEC
Confidence 34568899999998 899999999999999999999976531 12355 7776
Q ss_pred cccc---cchHH---------------------HHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCC
Q 040956 861 EMCV---LSLAD---------------------TIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLVILDEL 913 (1085)
Q Consensus 861 ~~a~---i~~~d---------------------~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEp 913 (1085)
...- +++.+ .++..+|.........+.++.+ ...+|++| +.+|+++|||||
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL--~~~p~iLLlDEP 156 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARAL--AAEPDILLMDEA 156 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCC
Confidence 5322 12222 2344556544333334444444 44477777 899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 914 grGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
++|+|+.....+.. .+..+.+..+.|+||+||+++++..++++..+..
T Consensus 157 ~saLD~~~r~~l~~-~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~ 204 (363)
T TIGR01186 157 FSALDPLIRDSMQD-ELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMK 204 (363)
T ss_pred cccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999888766554 4445555458899999999999988888765544
No 232
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.58 E-value=1.3e-14 Score=156.65 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=106.9
Q ss_pred EEEEcceeeeeecCCC--CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 791 LKIKGLWHPFALGENG--GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~--~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
|+++|+++.|-....+ ...+++|++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVN----AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh
Confidence 6788888877211001 1478999999997 7999999999999999999999764210
Q ss_pred ------------hhcccccccccccc---chH---------------------HHHHHHcCCccc----cccccchhhHH
Q 040956 852 ------------AQLGCFVPCEMCVL---SLA---------------------DTIFTRLGATDR----IMTGESTFLVE 891 (1085)
Q Consensus 852 ------------aqiG~~VPa~~a~i---~~~---------------------d~I~trig~~D~----i~~~~Stf~~E 891 (1085)
.++| |+|+..... +.. ..++..+|..+. ....+|..+..
T Consensus 78 ~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 78 QASPREVLEVRRKTIG-YVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred hcCHHHHHHHHhcceE-EEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 1233 666653211 111 113344554332 22345555555
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
...++++| +.+|+++|||||++|.|+.....+. .++..+.++ ++++|++||+.+++..++++
T Consensus 157 rl~laral--~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-g~tii~vsH~~~~~~~~~d~ 218 (224)
T TIGR02324 157 RVNIARGF--IADYPILLLDEPTASLDAANRQVVV-ELIAEAKAR-GAALIGIFHDEEVRELVADR 218 (224)
T ss_pred HHHHHHHH--hcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHHHHHhcce
Confidence 55577777 8999999999999999977755444 455666554 88999999999998877764
No 233
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=167.68 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=106.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|++ ++.+.| ++..+ |++|++. +|++++|+||||||||||||+|+++.-
T Consensus 2 l~~-~l~k~~-----~~~~~--~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQL-----GDLCL--TVNLTLP----AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEe-----CCEEE--EEEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 344 566666 22222 7999887 789999999999999999999987531
Q ss_pred -----Hhhccccccccccc---cchH---------------HHHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCC
Q 040956 851 -----LAQLGCFVPCEMCV---LSLA---------------DTIFTRLGATDRIMT---GESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 851 -----laqiG~~VPa~~a~---i~~~---------------d~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~ 904 (1085)
..++| |||+.... +++. +.++..+|..+.... .+|..+.....++++| +.+
T Consensus 70 ~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL--~~~ 146 (352)
T PRK11144 70 CLPPEKRRIG-YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRAL--LTA 146 (352)
T ss_pred ccchhhCCEE-EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH--HcC
Confidence 01234 56654322 1222 234556666544433 3444444445577777 899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
|+++|||||++|+|+.....+ ..++..+.++.+.++|++||+.+.+..++++..+.
T Consensus 147 p~llLLDEPts~LD~~~~~~l-~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l 202 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKREL-LPYLERLAREINIPILYVSHSLDEILRLADRVVVL 202 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999997765544 44566666555789999999999998888875544
No 234
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.5e-14 Score=159.26 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=108.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++|+...| ++..+++|++|++. +|++++|+||||+|||||+|++++..-.
T Consensus 24 ~~l~~~nl~~~~-----~~~~il~~vs~~i~----~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i 94 (272)
T PRK14236 24 TALEVRNLNLFY-----GDKQALFDISMRIP----KNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNI 94 (272)
T ss_pred cEEEEEEEEEEE-----CCeeEeeeEEEEEc----CCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEEC
Confidence 689999999988 34579999999998 7999999999999999999999876321
Q ss_pred -----------hhccccccccccc--cchHHHHH----------------------HHcCCcc-------ccccccchhh
Q 040956 852 -----------AQLGCFVPCEMCV--LSLADTIF----------------------TRLGATD-------RIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a~--i~~~d~I~----------------------trig~~D-------~i~~~~Stf~ 889 (1085)
.++| |+|++... .++.+.+. ..++..+ .....+|..+
T Consensus 95 ~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 95 YDKKVDVAELRRRVG-MVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred cccccCHHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 1222 56654321 12333321 1222211 1122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....++++| +.+|+++|||||++|.|+..... ...++..+.+ +.++|++||+.+.+..++++..
T Consensus 174 ~qrv~laral--~~~p~lllLDEPt~gLD~~~~~~-l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~ 238 (272)
T PRK14236 174 QQRLVIARAI--AIEPEVLLLDEPTSALDPISTLK-IEELITELKS--KYTIVIVTHNMQQAARVSDYTA 238 (272)
T ss_pred HHHHHHHHHH--HCCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEE
Confidence 4444566767 89999999999999999776444 4556666653 5799999999999888777543
No 235
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.57 E-value=1e-14 Score=158.37 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=96.2
Q ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------------hhcccccccccc---
Q 040956 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-----------------------AQLGCFVPCEMC--- 863 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-----------------------aqiG~~VPa~~a--- 863 (1085)
+.+|++|++. +|++++|+||||+|||||||+++++.-. ..+| |+|++..
T Consensus 1 ~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~~~~ 75 (230)
T TIGR02770 1 LVQDLNLSLK----RGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA-TIMQNPRTAF 75 (230)
T ss_pred CccceeEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeE-EEecCchhhc
Confidence 4578899887 7999999999999999999999886421 1233 5655431
Q ss_pred --ccchHH---------------------HHHHHcCCc------cccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCC
Q 040956 864 --VLSLAD---------------------TIFTRLGAT------DRIMTGESTFLVECTETASVLQKATQDSLVILDELG 914 (1085)
Q Consensus 864 --~i~~~d---------------------~I~trig~~------D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpg 914 (1085)
.+++.+ .++.+++.. +.....+|..+.....+++++ +.+|+++|||||+
T Consensus 76 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral--~~~p~vllLDEPt 153 (230)
T TIGR02770 76 NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALAL--LLEPPFLIADEPT 153 (230)
T ss_pred CcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHH--hcCCCEEEEcCCc
Confidence 112111 223334443 112233444444445567777 8999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 915 rGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+|.|...... ...++..+.++.++++|++||+.+.+..++++..
T Consensus 154 ~~LD~~~~~~-l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 154 TDLDVVNQAR-VLKLLRELRQLFGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred cccCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999766544 4455556655447899999999999887777543
No 236
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.57 E-value=7.4e-15 Score=176.58 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=109.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++|+...| ++..+++|++|.+. +|++++|+||||||||||||++++..-.
T Consensus 259 ~~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY-----NDRPILHNLSWQVN----PGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE-----CCeeEEeeceEEEc----CCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCC
Confidence 689999999988 34579999999998 7999999999999999999999875211
Q ss_pred ------hhccccccccccc-----cc-------------------------hHHHHHHHcCCcc-ccccccchhhHH---
Q 040956 852 ------AQLGCFVPCEMCV-----LS-------------------------LADTIFTRLGATD-RIMTGESTFLVE--- 891 (1085)
Q Consensus 852 ------aqiG~~VPa~~a~-----i~-------------------------~~d~I~trig~~D-~i~~~~Stf~~E--- 891 (1085)
.++| |+|++... .. .++.++..+|..+ ......++++.+
T Consensus 330 ~~~~~~~~i~-~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 330 TIWDIKKHIG-YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred CHHHHHhhce-EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence 1233 55542100 00 1223445566554 333333444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh-hcCccc
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE-FASHPH 959 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~-~~~~~~ 959 (1085)
...+|++| +.+|+++|||||++|.|+.....+ ..++..+.++.++++|++||+.+++.. ++++..
T Consensus 409 rv~la~al--~~~p~lllLDEPt~gLD~~~~~~l-~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~ 474 (490)
T PRK10938 409 LALIVRAL--VKHPTLLILDEPLQGLDPLNRQLV-RRFVDVLISEGETQLLFVSHHAEDAPACITHRLE 474 (490)
T ss_pred HHHHHHHH--hcCCCEEEEcCccccCCHHHHHHH-HHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE
Confidence 44466666 899999999999999997776554 455666665534579999999999876 465443
No 237
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=1.4e-14 Score=156.73 Aligned_cols=152 Identities=19% Similarity=0.214 Sum_probs=102.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|++..|- +...+.+|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 3 l~~~~l~~~~~----~~~~~l~~isl~i~----~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 3 IEFENVNFSYD----EKKPVLKDINFSIK----PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKS 74 (229)
T ss_pred EEEEEEEEecC----CCCccccceEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHH
Confidence 78888888772 12469999999998 799999999999999999999977531
Q ss_pred -Hhhcccccccccccc--chHHHH---------------HHHcCCcc--------------ccccccchhhHHhHHHHHH
Q 040956 851 -LAQLGCFVPCEMCVL--SLADTI---------------FTRLGATD--------------RIMTGESTFLVECTETASV 898 (1085)
Q Consensus 851 -laqiG~~VPa~~a~i--~~~d~I---------------~trig~~D--------------~i~~~~Stf~~Em~ela~i 898 (1085)
...+| |+|+....+ ++.+.+ ..+++..+ .....+|..+.....++++
T Consensus 75 ~~~~i~-~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 75 LRSMIG-VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred HhhhEE-EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHH
Confidence 11233 666543211 122211 11112111 0113455555555667777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
| +.+|+++|||||++|+|......+ ..++..+. + +.++|++||+++++.. +++
T Consensus 154 l--~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~ 206 (229)
T cd03254 154 M--LRDPKILILDEATSNIDTETEKLI-QEALEKLM-K-GRTSIIIAHRLSTIKN-ADK 206 (229)
T ss_pred H--hcCCCEEEEeCccccCCHHHHHHH-HHHHHHhc-C-CCEEEEEecCHHHHhh-CCE
Confidence 7 899999999999999997775554 44555553 3 7899999999998764 554
No 238
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.57 E-value=8.2e-15 Score=153.07 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=89.5
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccc
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGES 886 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~S 886 (1085)
+..+.+++ |.+. +|++++|+||||+|||||||+++++.- ..-|...- ....+++. .+.. .+|
T Consensus 12 ~~~~l~~~-~~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~-~g~~i~~~---------~q~~--~LS 73 (177)
T cd03222 12 VFFLLVEL-GVVK----EGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEW-DGITPVYK---------PQYI--DLS 73 (177)
T ss_pred CEEEEccC-cEEC----CCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEE-CCEEEEEE---------cccC--CCC
Confidence 34556664 6665 789999999999999999999988532 22231110 00011110 0000 177
Q ss_pred hhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 887 tf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
..+.....+++++ +.+|+++|||||++|+|+.....+.. ++..+.++.+.++|++||+++++..++++.
T Consensus 74 gGq~qrv~laral--~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~~~~~d~i 142 (177)
T cd03222 74 GGELQRVAIAAAL--LRNATFYLFDEPSAYLDIEQRLNAAR-AIRRLSEEGKKTALVVEHDLAVLDYLSDRI 142 (177)
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEECCHHHHHHhCCEE
Confidence 7777777788888 89999999999999999777555444 455555543489999999999998877654
No 239
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.1e-14 Score=158.48 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=106.3
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
.|+++|+.+.| ++..++++++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 4 ~l~i~~v~~~~-----~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 4 RIDVKDLNIYY-----GSFHAVEDVNLNIE----PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred cEEEeeEEEEE-----CCEeeeeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence 58999999888 34579999999997 7999999999999999999999886421
Q ss_pred ----------hhcccccccccc---ccchHHHH----------------------HHHcCCc----ccc---ccccchhh
Q 040956 852 ----------AQLGCFVPCEMC---VLSLADTI----------------------FTRLGAT----DRI---MTGESTFL 889 (1085)
Q Consensus 852 ----------aqiG~~VPa~~a---~i~~~d~I----------------------~trig~~----D~i---~~~~Stf~ 889 (1085)
..+| |+|+... ..++.+.+ +..+|.. +.. ...+|..+
T Consensus 75 ~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 75 GPGVDPVAVRRTIG-MVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred ccccChHHHhcceE-EEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 0122 4554321 12233322 2223321 111 12233433
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....++++| +.+|+++|||||++|.|+.....+ ..++..+. + ++++|++||+.+.+..++++..+
T Consensus 154 ~qrv~laral--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~ 219 (258)
T PRK14241 154 QQRLCIARAI--AVEPDVLLMDEPCSALDPISTLAI-EDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAF 219 (258)
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEE
Confidence 3344466666 899999999999999997765544 45666664 3 57999999999998888876443
No 240
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.7e-14 Score=156.54 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=122.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|+++++.+-|.....+...+.+|++|.++ +|++++|+|.+|+|||||+|++-++.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~----~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIP----KGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEc----CCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH
Confidence 67788877774321123568999999998 89999999999999999999994322
Q ss_pred ---HHhhcccccccccccc---ch---------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHH
Q 040956 850 ---ILAQLGCFVPCEMCVL---SL---------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVL 899 (1085)
Q Consensus 850 ---ilaqiG~~VPa~~a~i---~~---------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL 899 (1085)
.-.++| .+++...-+ ++ +..++..+|..|......+..+++ ...+|++|
T Consensus 78 Lr~~R~~IG-MIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 78 LRQLRQKIG-MIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HHHHHhhcc-EEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 233566 555543211 12 223667788888777666666555 44588888
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
|++|.++|.||+|+.+||.....|. .+|..+.++.|.|++++||-++.++.+|++..|..
T Consensus 157 --a~~P~iLL~DEaTSALDP~TT~sIL-~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 157 --ANNPKILLCDEATSALDPETTQSIL-ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred --hcCCCEEEecCccccCChHHHHHHH-HHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence 9999999999999999988866654 46677777789999999999999999999876653
No 241
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.2e-14 Score=157.56 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=105.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|.++++...| ++..+.+|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 3 ~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 3 KISVKDLDLFY-----GDFQALKKINLDIE----ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73 (250)
T ss_pred eEEEEEEEEEE-----CCceeeecceEEEc----CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 47899998888 34579999999998 799999999999999999999987521
Q ss_pred ---------Hhhccccccccccc--cchHHHHH----------------------HHcCCc-------cccccccchhhH
Q 040956 851 ---------LAQLGCFVPCEMCV--LSLADTIF----------------------TRLGAT-------DRIMTGESTFLV 890 (1085)
Q Consensus 851 ---------laqiG~~VPa~~a~--i~~~d~I~----------------------trig~~-------D~i~~~~Stf~~ 890 (1085)
...+| |+|+.... .++.+.+. ..++.. +.....+|..+.
T Consensus 74 ~~~~~~~~~~~~i~-~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 74 KSDIDVNQLRKRVG-MVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred ccccchHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence 01233 66654321 23333321 122211 111223444444
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
....++++| +.+|+++|||||++|.|+.....+ ..++..+. + +.++|++||+.+.+..++++.
T Consensus 153 qrv~laral--~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v 215 (250)
T PRK14240 153 QRLCIARAL--AVEPEVLLMDEPTSALDPISTLKI-EELIQELK-K-DYTIVIVTHNMQQASRISDKT 215 (250)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEE
Confidence 445566777 899999999999999997776554 44555553 3 689999999999888777654
No 242
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=2.5e-14 Score=152.50 Aligned_cols=162 Identities=16% Similarity=0.148 Sum_probs=109.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--h--------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--A-------------- 852 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--a-------------- 852 (1085)
.++.++|+++-|-... ++..++++++|.+. +|++++|+||||+||||||++++++.-. +
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~il~~~s~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~ 76 (202)
T cd03233 2 STLSWRNISFTTGKGR-SKIPILKDFSGVVK----PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76 (202)
T ss_pred ceEEEEccEEEeccCC-CCceeeeeEEEEEC----CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECcc
Confidence 3678899988884321 35679999999998 7999999999999999999999886430 1
Q ss_pred -------hcccccccccc---ccchHHHHHHHcCC-ccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 040956 853 -------QLGCFVPCEMC---VLSLADTIFTRLGA-TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921 (1085)
Q Consensus 853 -------qiG~~VPa~~a---~i~~~d~I~trig~-~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~D 921 (1085)
++| |+|+... ..++.+.+...... .+.....+|..+.....++++| +.+|.++|||||++|+|+..
T Consensus 77 ~~~~~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral--~~~p~llllDEPt~~LD~~~ 153 (202)
T cd03233 77 FAEKYPGEII-YVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEAL--VSRASVLCWDNSTRGLDSST 153 (202)
T ss_pred chhhhcceEE-EEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHH--hhCCCEEEEcCCCccCCHHH
Confidence 122 4554321 23455554321111 2333445566666566677777 89999999999999999776
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEEec-hhHHHhhcCccc
Q 040956 922 GYAIAYAVFRQLVERINCRLLFATHY-HPLTKEFASHPH 959 (1085)
Q Consensus 922 g~aia~avle~L~~~~~~tiL~aTH~-~el~~~~~~~~~ 959 (1085)
... .+.++..+.++.+.++|++||+ .+.+..++++..
T Consensus 154 ~~~-~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 154 ALE-ILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred HHH-HHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 544 4556666665435666666554 577777776543
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.57 E-value=9.7e-15 Score=175.98 Aligned_cols=157 Identities=23% Similarity=0.238 Sum_probs=110.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------- 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------- 851 (1085)
|+++|+...| ++..+++|++|++. +|++++|+||||||||||||+|+++.-.
T Consensus 2 l~i~~l~~~~-----~~~~il~~isl~i~----~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF-----GGVKALDGIDLEVR----PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe-----CCeEeecceEEEEe----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH
Confidence 6788888877 34579999999998 7999999999999999999999875421
Q ss_pred -----hhcccccccccc---ccchH-------------------------HHHHHHcCCcccc----ccccchhhHHhHH
Q 040956 852 -----AQLGCFVPCEMC---VLSLA-------------------------DTIFTRLGATDRI----MTGESTFLVECTE 894 (1085)
Q Consensus 852 -----aqiG~~VPa~~a---~i~~~-------------------------d~I~trig~~D~i----~~~~Stf~~Em~e 894 (1085)
..+| |||+... .+++. +.++.++|..+.. ...+|..+.....
T Consensus 73 ~~~~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 73 RDTERAGIV-IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHHhCCEE-EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 1234 6666431 11222 2234455543322 2234444444445
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|++| +.+|+++|||||++|.|+..... ...++..+.++ |.++|++||+.+++..++++..+.
T Consensus 152 iA~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 152 IAKAL--NKQARLLILDEPSSSLTEKETEI-LLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred HHHHH--hhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEE
Confidence 77777 88999999999999999776554 44466667654 889999999999998888765443
No 244
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.1e-14 Score=159.91 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=107.9
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------- 850 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------- 850 (1085)
.++|++++++..| ++..+++|++|++. +|++++|+|+||+|||||||+|+++.-
T Consensus 22 ~~~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 22 KVVFDTQNLNLWY-----GEDHALKNINLDIH----ENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQN 92 (271)
T ss_pred ceEEEEeeeEEEE-----CCcceeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEE
Confidence 3679999999887 34579999999998 799999999999999999999988642
Q ss_pred -----------Hhhccccccccccc--cchHHHHH----------------------HHcCC----c---cccccccchh
Q 040956 851 -----------LAQLGCFVPCEMCV--LSLADTIF----------------------TRLGA----T---DRIMTGESTF 888 (1085)
Q Consensus 851 -----------laqiG~~VPa~~a~--i~~~d~I~----------------------trig~----~---D~i~~~~Stf 888 (1085)
..++| |+|++... .++.+.+. ..++. . +.....+|..
T Consensus 93 ~~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgG 171 (271)
T PRK14238 93 IFDKSYSVEELRTNVG-MVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGG 171 (271)
T ss_pred cccccccHHHHhhhEE-EEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHH
Confidence 01123 55554211 12333331 01110 0 1111223444
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+.....++++| +.+|+++|||||++|.|+.....+. .++..+.+ +.++|++||+.+++..++++..+
T Consensus 172 e~qrv~laraL--~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~ 238 (271)
T PRK14238 172 QQQRLCIARCL--AIEPDVILMDEPTSALDPISTLKVE-ELVQELKK--DYSIIIVTHNMQQAARISDKTAF 238 (271)
T ss_pred HHHHHHHHHHH--HcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEE
Confidence 44444567777 8999999999999999977765544 45555543 68999999999998888876544
No 245
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.57 E-value=1.9e-14 Score=155.47 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=104.2
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------- 850 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------- 850 (1085)
.+.|+++++.+.|-. .++..+.++++|.+. +|++++|+||||+|||||+++++++.-
T Consensus 9 ~~~l~~~~l~~~~~~--~~~~~~l~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 9 KGIVKFQNVTFAYPT--RPDTLVLQDVSFTLH----PGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE 82 (226)
T ss_pred CceEEEEEEEEEeCC--CCCCccccceEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC
Confidence 368999999988821 012469999999998 799999999999999999999987531
Q ss_pred ----Hhhccccccccccc--cchHHH------------------------HHHHc--CCccccc---cccchhhHHhHHH
Q 040956 851 ----LAQLGCFVPCEMCV--LSLADT------------------------IFTRL--GATDRIM---TGESTFLVECTET 895 (1085)
Q Consensus 851 ----laqiG~~VPa~~a~--i~~~d~------------------------I~tri--g~~D~i~---~~~Stf~~Em~el 895 (1085)
..++| |+|+.... .++.+. ++..+ |..+.+. ..+|..+.....+
T Consensus 83 ~~~~~~~i~-~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~l 161 (226)
T cd03248 83 HKYLHSKVS-LVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAI 161 (226)
T ss_pred HHHHHhhEE-EEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHH
Confidence 11233 55554211 111111 12222 3222222 2344444444456
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+++| +.+|+++|||||++|.|+.....+. .++..+. + +.++|++||+++++.. +++
T Consensus 162 aral--~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~-~-~~tii~~sh~~~~~~~-~d~ 217 (226)
T cd03248 162 ARAL--IRNPQVLILDEATSALDAESEQQVQ-QALYDWP-E-RRTVLVIAHRLSTVER-ADQ 217 (226)
T ss_pred HHHH--hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C-CCEEEEEECCHHHHHh-CCE
Confidence 7777 8999999999999999987755544 3444443 3 5799999999999864 554
No 246
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=3.4e-14 Score=157.02 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=108.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|++++++..| ++..+++|++|++. +|++++|+|+||+|||||||+++++.-.
T Consensus 6 ~~l~~~~l~~~~-----~~~~il~~isl~i~----~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i 76 (259)
T PRK14260 6 PAIKVKDLSFYY-----NTSKAIEGISMDIY----RNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI 76 (259)
T ss_pred ceEEEEEEEEEE-----CCeEeecceEEEEc----CCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEec
Confidence 478999999888 34579999999998 7999999999999999999999875321
Q ss_pred -----------hhcccccccccc--ccchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 852 -----------AQLGCFVPCEMC--VLSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a--~i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
.++| |+|++.. ..++.+.+ +..+|.. +.....+|..+
T Consensus 77 ~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 77 YDPRININRLRRQIG-MVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQ 155 (259)
T ss_pred cccccchHhhhhheE-EEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 1233 4554421 12222222 2222321 11122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
.....++++| +.+|+++|||||++|.|+..... .+.++..+.+ +.++|++||+.+.+..++++..+.
T Consensus 156 ~qrv~laral--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 156 QQRLCIARAL--AIKPKVLLMDEPCSALDPIATMK-VEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCCccCCHHHHHH-HHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 4455577777 89999999999999999766544 4445555543 579999999999999888765443
No 247
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.57 E-value=2e-14 Score=154.79 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=103.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++++...|-. +...+.++++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 3 l~~~~l~~~~~~---~~~~~l~~i~~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 3 IEFKNVSLRYRP---NLPPVLKNISFSIK----PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEEEEecCC---CCcccccceEEEEC----CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHH
Confidence 688888887721 12479999999998 799999999999999999999987531
Q ss_pred -Hhhcccccccccccc--chHH--------------HHHHHcCCcccc--------------ccccchhhHHhHHHHHHH
Q 040956 851 -LAQLGCFVPCEMCVL--SLAD--------------TIFTRLGATDRI--------------MTGESTFLVECTETASVL 899 (1085)
Q Consensus 851 -laqiG~~VPa~~a~i--~~~d--------------~I~trig~~D~i--------------~~~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+...-+ ++.+ ..+.+++..+.+ ...+|..+.....++++|
T Consensus 76 ~~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 76 LRSRIS-IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred HhhhEE-EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 11234 666543211 1121 123334433222 234555555555677777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+.+|+++|||||++|+|+..... ...++..+. + +.++|++||+.+++.. +++
T Consensus 155 --~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~ 206 (221)
T cd03244 155 --LRKSKILVLDEATASVDPETDAL-IQKTIREAF-K-DCTVLTIAHRLDTIID-SDR 206 (221)
T ss_pred --hcCCCEEEEeCccccCCHHHHHH-HHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCE
Confidence 89999999999999999776544 344555543 2 5789999999998865 443
No 248
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.57 E-value=1.1e-14 Score=176.59 Aligned_cols=163 Identities=24% Similarity=0.220 Sum_probs=114.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++++...|-.. .+...+++|++|.+. +|++++|+||||||||||||+++++.-.
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~~~l~~isl~i~----~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 78 (529)
T PRK15134 4 PLLAIENLSVAFRQQ-QTVRTVVNDVSLQIE----AGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78 (529)
T ss_pred ceEEEeceEEEecCC-CCceeeeeceEEEEe----CCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence 579999998887210 012479999999998 7999999999999999999999876321
Q ss_pred -------------hhcccccccccc--c---cch----------------------HHHHHHHcCCcc------cccccc
Q 040956 852 -------------AQLGCFVPCEMC--V---LSL----------------------ADTIFTRLGATD------RIMTGE 885 (1085)
Q Consensus 852 -------------aqiG~~VPa~~a--~---i~~----------------------~d~I~trig~~D------~i~~~~ 885 (1085)
.++| |||+... . ..+ ++.++..+|..+ .....+
T Consensus 79 ~~~~~~~~~~~~~~~ig-~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 79 LHASEQTLRGVRGNKIA-MIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQL 157 (529)
T ss_pred ccCCHHHHHHHhcCceE-EEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCccc
Confidence 1244 6676531 0 111 112344455532 233445
Q ss_pred chhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
|..+.....+|++| +.+|+++|||||++|.|+.....+ ..++..+.++.+.++|++||+.+.+..++++..+
T Consensus 158 SgGe~qrv~iAraL--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~ 229 (529)
T PRK15134 158 SGGERQRVMIAMAL--LTRPELLIADEPTTALDVSVQAQI-LQLLRELQQELNMGLLFITHNLSIVRKLADRVAV 229 (529)
T ss_pred CHHHHHHHHHHHHH--hcCCCEEEEcCCCCccCHHHHHHH-HHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE
Confidence 55555555677777 899999999999999997775544 4466666554578999999999999888876543
No 249
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.57 E-value=1.4e-14 Score=167.14 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=98.1
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------------Hhhcccccccccc---c
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------------LAQLGCFVPCEMC---V 864 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------------laqiG~~VPa~~a---~ 864 (1085)
|++|.+. +|++++|+||||||||||||+|+++.- ..++| |+|+... .
T Consensus 15 ~isl~i~----~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~-~v~q~~~l~~~ 89 (354)
T TIGR02142 15 DADFTLP----GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG-YVFQEARLFPH 89 (354)
T ss_pred EEEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE-EEecCCccCCC
Confidence 8999887 789999999999999999999977531 01233 6665432 1
Q ss_pred cchH-------------------HHHHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 040956 865 LSLA-------------------DTIFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922 (1085)
Q Consensus 865 i~~~-------------------d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg 922 (1085)
+++. +.++.++|..+..... +|..+.....+|++| +.+|.++|||||++|.|+...
T Consensus 90 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL--~~~p~lllLDEPts~LD~~~~ 167 (354)
T TIGR02142 90 LSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRAL--LSSPRLLLMDEPLAALDDPRK 167 (354)
T ss_pred CcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH--HcCCCEEEEcCCCcCCCHHHH
Confidence 2222 2344455554433333 444444444577777 899999999999999997765
Q ss_pred HHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 923 ~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
.. ...++..+.++.+.++|++||+.+.+..++++..+.
T Consensus 168 ~~-l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l 205 (354)
T TIGR02142 168 YE-ILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL 205 (354)
T ss_pred HH-HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 54 445566666555789999999999998888765444
No 250
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=2.4e-14 Score=157.32 Aligned_cols=155 Identities=18% Similarity=0.161 Sum_probs=105.5
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------ 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------ 851 (1085)
+|+++++...| ++..+.++++|.+. +|++++|+||||+|||||||+|+++.-.
T Consensus 4 ~l~~~~l~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 4 LLSAQDVNIYY-----GDKQAVKNVNLDVQ----RGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred EEEEeeeEEEE-----CCEEeeccceEEEc----CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence 68899998887 34679999999998 7999999999999999999999886311
Q ss_pred ----------hhcccccccccc---ccchHHHHHH----------------------HcCCc-------cccccccchhh
Q 040956 852 ----------AQLGCFVPCEMC---VLSLADTIFT----------------------RLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 ----------aqiG~~VPa~~a---~i~~~d~I~t----------------------rig~~-------D~i~~~~Stf~ 889 (1085)
..+| |+|+... ..++.+.+.. .++.. +.....+|..+
T Consensus 75 ~~~~~~~~~~~~i~-~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 75 GPRVDPVAMRRRVG-MVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred cCccCHHHhhceeE-EEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 1233 5555432 1233333321 11110 11112234444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....++++| +.+|+|+|||||++|.|...... ...++..+. + +.++|++||+.+++..++++..
T Consensus 154 ~qrv~laral--~~~p~llllDEP~~~LD~~~~~~-l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 154 QQRLCIARAL--AVEPEILLMDEPTSALDPASTAR-IEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEE
Confidence 4444466666 89999999999999999766444 444566654 3 6899999999999888877643
No 251
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1.7e-14 Score=161.14 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=109.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+...|-. .....++++++|.+. +|++++|+||||+||||||++|+++.-
T Consensus 3 ~~l~~~~l~~~~~~--~~~~~~l~~v~l~i~----~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 3 KILEVENLVFKYEK--ESDVNQLNGVSFSIT----KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV 76 (277)
T ss_pred ceEEEEEEEEEcCC--CCcCeeeeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCH
Confidence 36899999888721 012358999999998 799999999999999999999976531
Q ss_pred ---Hhhccccccccc----cccchHHHH---------------------HHHcCCccccc---cccchhhHHhHHHHHHH
Q 040956 851 ---LAQLGCFVPCEM----CVLSLADTI---------------------FTRLGATDRIM---TGESTFLVECTETASVL 899 (1085)
Q Consensus 851 ---laqiG~~VPa~~----a~i~~~d~I---------------------~trig~~D~i~---~~~Stf~~Em~ela~iL 899 (1085)
...+| |+|+.. ...++.+.| +..+|..+... ..+|..+.....+|++|
T Consensus 77 ~~~~~~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 77 WNLRRKIG-MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII 155 (277)
T ss_pred HHHhcceE-EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 12244 666653 122333333 22333322222 23444445555577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|+|+.....+. .++..+.++.|.|+|++||+.+++. .+++.
T Consensus 156 --~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i 210 (277)
T PRK13642 156 --ALRPEIIILDESTSMLDPTGRQEIM-RVIHEIKEKYQLTVLSITHDLDEAA-SSDRI 210 (277)
T ss_pred --HcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH-hCCEE
Confidence 8999999999999999988765544 5666666645889999999999986 46543
No 252
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.56 E-value=1.6e-14 Score=161.02 Aligned_cols=156 Identities=24% Similarity=0.205 Sum_probs=105.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------- 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------- 851 (1085)
|+++|+.+.| ++..++++++|.+. +|++++|+||||+|||||||+|+++.-.
T Consensus 2 l~~~nl~~~~-----~~~~il~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVAR-----RHRAILRDLSLRIE----PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEE-----CCEeEEecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEE
Confidence 6788888877 34679999999998 7999999999999999999999875321
Q ss_pred ---------hhccccccccc---cccchHHHH-------------------------HHHcCCccccccccchhhH---H
Q 040956 852 ---------AQLGCFVPCEM---CVLSLADTI-------------------------FTRLGATDRIMTGESTFLV---E 891 (1085)
Q Consensus 852 ---------aqiG~~VPa~~---a~i~~~d~I-------------------------~trig~~D~i~~~~Stf~~---E 891 (1085)
.....|+|+.. ...++.+.+ +..+|..+......++++. .
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELA 152 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 01122566542 122333332 2233333222222333333 3
Q ss_pred hHHHHHHHHhC---------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 892 CTETASVLQKA---------TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 892 m~ela~iL~~a---------t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
...++++| + .+|+++|||||++|.|+.....+ ..++..+.+..+.++|++||+.+++..++++.
T Consensus 153 rv~laral--~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 153 RVQFARVL--AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRL-LDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred HHHHHHHH--hccccccccCCCCCEEEEcCccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 44466666 5 58999999999999997765544 44555665544789999999999988777654
No 253
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.1e-14 Score=161.16 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=107.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|.++++.+.| ++..++++++|++. +|++++|+||||+||||||++|+++.-
T Consensus 44 ~~l~i~nl~~~~-----~~~~iL~~is~~i~----~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 44 AKLSVEDLDVYY-----GDDHALKGVSMDIP----EKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred ceEEEEEEEEEe-----CCeeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 579999999888 34679999999998 799999999999999999999987631
Q ss_pred ----------Hhhcccccccccc--ccchHHHHH----------------------------------HHcCCc------
Q 040956 851 ----------LAQLGCFVPCEMC--VLSLADTIF----------------------------------TRLGAT------ 878 (1085)
Q Consensus 851 ----------laqiG~~VPa~~a--~i~~~d~I~----------------------------------trig~~------ 878 (1085)
...+| |+|+... ..++.+.+. ..++..
T Consensus 115 ~~~~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 115 YQDGVNLVELRKRVG-MVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred ccccccHHHHhhceE-EEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 01123 6665432 112333222 112221
Q ss_pred -cccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 879 -DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 879 -D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+.....+|..+.....++++| +.+|+|+|||||++|+|+..... ...++..+.+ +.++|++||+.+.+..++++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL--~~~p~lLLLDEPtsgLD~~~~~~-l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~ 268 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCL--AVDPEVILMDEPASALDPIATSK-IEDLIEELAE--EYTVVVVTHNMQQAARISDQ 268 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhc--CCEEEEEEcCHHHHHHhcCE
Confidence 111122444444444566777 89999999999999999766544 4455566654 47899999999998888775
Q ss_pred c
Q 040956 958 P 958 (1085)
Q Consensus 958 ~ 958 (1085)
.
T Consensus 269 i 269 (305)
T PRK14264 269 T 269 (305)
T ss_pred E
Confidence 3
No 254
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.4e-14 Score=150.19 Aligned_cols=154 Identities=26% Similarity=0.258 Sum_probs=114.3
Q ss_pred CEEEEEcceeeeeecCCCC-cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGG-LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------ 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~-~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------ 849 (1085)
.+|+|+|++-.+ ++ +.|+++++|+++ .|++.+|.||||||||||..+|++.-
T Consensus 2 ~~L~I~dLhv~v-----~~~keILkgvnL~v~----~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 2 MMLEIKDLHVEV-----EGKKEILKGVNLTVK----EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE 72 (251)
T ss_pred ceeEEeeeEEEe-----cCchhhhcCcceeEc----CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence 368999987666 34 499999999998 79999999999999999999996532
Q ss_pred ----HHhhccccc----cccccccchH------------------------HHHHHHcCCcc-----ccccccchhhHHh
Q 040956 850 ----ILAQLGCFV----PCEMCVLSLA------------------------DTIFTRLGATD-----RIMTGESTFLVEC 892 (1085)
Q Consensus 850 ----ilaqiG~~V----Pa~~a~i~~~------------------------d~I~trig~~D-----~i~~~~Stf~~Em 892 (1085)
-.|..|.|+ |.+-.-+... ......++..+ .+..|.|......
T Consensus 73 l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR 152 (251)
T COG0396 73 LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR 152 (251)
T ss_pred CCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence 136667665 3322111111 11233344333 2334555555556
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
.|+..++ +.+|+|+|||||=+|.| .|+..+....++.+.+. +..+|++|||.++++.+.
T Consensus 153 ~EilQ~~--~lePkl~ILDE~DSGLD-Idalk~V~~~i~~lr~~-~~~~liITHy~rll~~i~ 211 (251)
T COG0396 153 NEILQLL--LLEPKLAILDEPDSGLD-IDALKIVAEGINALREE-GRGVLIITHYQRLLDYIK 211 (251)
T ss_pred HHHHHHH--hcCCCEEEecCCCcCcc-HHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcC
Confidence 6777777 89999999999999999 88888888899999876 889999999999988664
No 255
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=9.1e-15 Score=152.61 Aligned_cols=141 Identities=21% Similarity=0.181 Sum_probs=91.7
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccccc-ccchH--HHHHHHcCCcc-ccc-
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMC-VLSLA--DTIFTRLGATD-RIM- 882 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a-~i~~~--d~I~trig~~D-~i~- 882 (1085)
..+++|++|++. +|++++|+||||+|||||||++..-.=-..++...+.... .+.++ ...+.+++..+ .+.
T Consensus 8 ~~~l~~isl~i~----~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~ 83 (176)
T cd03238 8 VHNLQNLDVSIP----LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQ 83 (176)
T ss_pred eeeecceEEEEc----CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCC
Confidence 577899999998 7999999999999999999987310000000101111000 01111 23567777543 233
Q ss_pred --cccchhhHHhHHHHHHHHhCCC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 883 --TGESTFLVECTETASVLQKATQ--DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 883 --~~~Stf~~Em~ela~iL~~at~--~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
..+|..+.....+++++ +.+ |+++|||||++|.|......+.. ++..+.+ .+.++|++||+++++. .+++
T Consensus 84 ~~~~LSgGq~qrl~laral--~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~-~g~tvIivSH~~~~~~-~~d~ 157 (176)
T cd03238 84 KLSTLSGGELQRVKLASEL--FSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLID-LGNTVILIEHNLDVLS-SADW 157 (176)
T ss_pred CcCcCCHHHHHHHHHHHHH--hhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHH-hCCE
Confidence 34455555555577777 778 99999999999999777555444 4555554 4889999999998864 4554
No 256
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.5e-14 Score=174.71 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=110.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++++...+ ..+.+|++|.+. +|++++|+||||||||||||+|+++.-
T Consensus 264 ~~l~~~~l~~~~-------~~~l~~isl~i~----~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSRD-------RKKVRDISFSVC----RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCccccC-------CCcccceeEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCH
Confidence 579999998654 138999999998 799999999999999999999976530
Q ss_pred ----Hhhccccccccc---c---ccch------------------------------HHHHHHHcCCc-cccccccchhh
Q 040956 851 ----LAQLGCFVPCEM---C---VLSL------------------------------ADTIFTRLGAT-DRIMTGESTFL 889 (1085)
Q Consensus 851 ----laqiG~~VPa~~---a---~i~~------------------------------~d~I~trig~~-D~i~~~~Stf~ 889 (1085)
...+| |||+.. . .+++ ++.++.++|.. +.......+++
T Consensus 333 ~~~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 411 (510)
T PRK09700 333 LDAVKKGMA-YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELS 411 (510)
T ss_pred HHHHHCCcE-EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCC
Confidence 11244 777641 0 1111 12345556654 33333333444
Q ss_pred H---HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 V---ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~---Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
. ....+|++| +.+|.|+|||||++|.|+..... ...++..+.++ |.++|++||+.+++..++++..
T Consensus 412 gGq~qrv~lAral--~~~p~lLlLDEPt~~LD~~~~~~-l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~ 480 (510)
T PRK09700 412 GGNQQKVLISKWL--CCCPEVIIFDEPTRGIDVGAKAE-IYKVMRQLADD-GKVILMVSSELPEIITVCDRIA 480 (510)
T ss_pred hHHHHHHHHHHHH--hcCCCEEEECCCCCCcCHHHHHH-HHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEE
Confidence 4 444567767 89999999999999999776544 45566666654 8899999999999988887643
No 257
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.1e-14 Score=156.53 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=104.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
-+++++...| ++..++++++|++. +|++++|+||||+|||||+|+|+++.-
T Consensus 6 ~~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 6 ASVKNLNLWY-----GSKQILFDINLDIY----KREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEeeeEEEEE-----CCeeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 4667777666 34578999999998 799999999999999999999987631
Q ss_pred --------Hhhcccccccccccc--chHHH-----------------------HHHHcCCcc-------ccccccchhhH
Q 040956 851 --------LAQLGCFVPCEMCVL--SLADT-----------------------IFTRLGATD-------RIMTGESTFLV 890 (1085)
Q Consensus 851 --------laqiG~~VPa~~a~i--~~~d~-----------------------I~trig~~D-------~i~~~~Stf~~ 890 (1085)
...+| |+|+....+ ++.+. ++..+|..+ .....+|..+.
T Consensus 77 ~~~~~~~~~~~i~-~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 77 VDTNVVLLRAKVG-MVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred cccchHHHhhhEE-EEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence 01233 666643211 22222 233344322 11223444444
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
....++++| +.+|+++|||||++|+|...... ...++..+. + +.++|++||+.+++..++++..
T Consensus 156 qrv~laral--~~~p~llllDEPt~~LD~~~~~~-l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~ 219 (251)
T PRK14244 156 QRLCIARAI--AVKPTMLLMDEPCSALDPVATNV-IENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVA 219 (251)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEE
Confidence 444466666 89999999999999999766544 445666653 3 7899999999999888777543
No 258
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.6e-14 Score=156.86 Aligned_cols=153 Identities=23% Similarity=0.220 Sum_probs=100.3
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++++.+.|- .....+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~~---~~~~~~l~~i~~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 2 EFKNVTFRYP---GDGPPVLRDISLDIP----AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL 74 (234)
T ss_pred EEEEEEEEeC---CCCccceeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHH
Confidence 5677777661 011378999999987 799999999999999999999977541
Q ss_pred Hhhccccccccccc--cchHHHHH---------------HHcCC-----------cc---ccccccchhhHHhHHHHHHH
Q 040956 851 LAQLGCFVPCEMCV--LSLADTIF---------------TRLGA-----------TD---RIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 851 laqiG~~VPa~~a~--i~~~d~I~---------------trig~-----------~D---~i~~~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+.... .++.+.+. ...++ .. .....+|..+.....++++|
T Consensus 75 ~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al 153 (234)
T cd03251 75 RRQIG-LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153 (234)
T ss_pred HhhEE-EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHH
Confidence 12244 66654321 12222221 01111 11 11223444444455577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|+|......+ ..++..+. + +.++|++||+++++.. +++.
T Consensus 154 --~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v 206 (234)
T cd03251 154 --LKDPPILILDEATSALDTESERLV-QAALERLM-K-NRTTFVIAHRLSTIEN-ADRI 206 (234)
T ss_pred --hcCCCEEEEeCccccCCHHHHHHH-HHHHHHhc-C-CCEEEEEecCHHHHhh-CCEE
Confidence 899999999999999997775554 44555554 3 7899999999999865 5543
No 259
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.6e-14 Score=158.00 Aligned_cols=157 Identities=19% Similarity=0.200 Sum_probs=108.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
|.|.++++...| ++..+.+|++|.+. +|++++|+||||+||||||++|++..-.
T Consensus 9 ~~i~~~~~~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 9 DVFNISRLYLYI-----NDKAILKDITIKIP----NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred hheeeeeEEEec-----CCceeEeceEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcc
Confidence 689999999887 56789999999997 7999999999999999999999865311
Q ss_pred ----------hhcccccccccc---ccchHHHH----------------------HHHcCCc-------cccccccchhh
Q 040956 852 ----------AQLGCFVPCEMC---VLSLADTI----------------------FTRLGAT-------DRIMTGESTFL 889 (1085)
Q Consensus 852 ----------aqiG~~VPa~~a---~i~~~d~I----------------------~trig~~-------D~i~~~~Stf~ 889 (1085)
.++| |+|+... ..++.+.+ +..++.. +......|..+
T Consensus 80 ~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 80 IFQIDAIKLRKEVG-MVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred cccCCHHHHhcceE-EEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 1122 5555421 11222222 2233432 11122344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....+++++ +.+|+++|||||+.|+|...... ...++..+. + ++++|++||+.+.+..++++..+
T Consensus 159 ~qrl~laral--~~~P~llllDEPt~~LD~~~~~~-l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~ 224 (257)
T PRK14246 159 QQRLTIARAL--ALKPKVLLMDEPTSMIDIVNSQA-IEKLITELK-N-EIAIVIVSHNPQQVARVADYVAF 224 (257)
T ss_pred HHHHHHHHHH--HcCCCEEEEcCCCccCCHHHHHH-HHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEE
Confidence 4455567777 89999999999999999766544 445555554 3 68999999999999887775433
No 260
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.5e-14 Score=175.56 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=105.6
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------hhccccccc
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------AQLGCFVPC 860 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------aqiG~~VPa 860 (1085)
|+++|+..-| ++..+++|++|++. +|++++|+||||||||||||+++++.-. ..+| |+|+
T Consensus 2 l~i~~ls~~~-----~~~~il~~vsl~i~----~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q 71 (530)
T PRK15064 2 LSTANITMQF-----GAKPLFENISVKFG----GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQ 71 (530)
T ss_pred EEEEEEEEEe-----CCcEeEeCCEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEec
Confidence 6788888777 34679999999998 7999999999999999999999875411 1244 5555
Q ss_pred ccc---ccch-----------------------------------------------------HHHHHHHcCCccc----
Q 040956 861 EMC---VLSL-----------------------------------------------------ADTIFTRLGATDR---- 880 (1085)
Q Consensus 861 ~~a---~i~~-----------------------------------------------------~d~I~trig~~D~---- 880 (1085)
... .+++ ++.++..+|..+.
T Consensus 72 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 151 (530)
T PRK15064 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYG 151 (530)
T ss_pred cCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcC
Confidence 321 1111 1234445565432
Q ss_pred cccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 881 i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
....+|..+.....+|++| +.+|.++|||||+.|.|+.... .+.+.|.+ .+.++|++||+.+++..++++.
T Consensus 152 ~~~~LSgGq~qrv~lA~aL--~~~p~lLlLDEPt~~LD~~~~~----~l~~~l~~-~~~tiiivsHd~~~~~~~~d~i 222 (530)
T PRK15064 152 LMSEVAPGWKLRVLLAQAL--FSNPDILLLDEPTNNLDINTIR----WLEDVLNE-RNSTMIIISHDRHFLNSVCTHM 222 (530)
T ss_pred chhhcCHHHHHHHHHHHHH--hcCCCEEEEcCCCcccCHHHHH----HHHHHHHh-CCCeEEEEeCCHHHHHhhcceE
Confidence 2234555555555677777 8999999999998888866543 23333333 4889999999999998888754
No 261
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=2.2e-14 Score=156.31 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=103.3
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------Hh
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------LA 852 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------la 852 (1085)
.++++...| ++ .+.++++|++. +|++++|+||||+|||||||+++++.- ..
T Consensus 2 ~~~~l~~~~-----~~-~~l~~is~~i~----~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 2 KVENLSKDW-----KE-FKLKNVSLEVE----RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71 (235)
T ss_pred eeEeEEEEe-----CC-ceeeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHc
Confidence 455666555 22 37999999987 799999999999999999999977531 11
Q ss_pred hccccccccccc---cchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCC
Q 040956 853 QLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 853 qiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~ 905 (1085)
.+| |+|+.... .++.+ .++..+|....... .+|..+.....+++++ +.+|
T Consensus 72 ~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral--~~~p 148 (235)
T cd03299 72 DIS-YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL--VVNP 148 (235)
T ss_pred CEE-EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHH--HcCC
Confidence 233 55554311 12222 22334444332222 3444444444466666 8999
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+++|||||+.|.|.... ...+.++..+..+.++++|++||+.+++..++++.
T Consensus 149 ~llllDEPt~gLD~~~~-~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i 200 (235)
T cd03299 149 KILLLDEPFSALDVRTK-EKLREELKKIRKEFGVTVLHVTHDFEEAWALADKV 200 (235)
T ss_pred CEEEECCCcccCCHHHH-HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 99999999999997664 44556666666545889999999999988777654
No 262
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.55 E-value=1.6e-14 Score=157.00 Aligned_cols=140 Identities=18% Similarity=0.108 Sum_probs=93.8
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc----------------cccccccc---ccchHHH--
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG----------------CFVPCEMC---VLSLADT-- 870 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG----------------~~VPa~~a---~i~~~d~-- 870 (1085)
++++|.+. +|++++|+||||+|||||+|+++++.-. ..| .|+|+... ..++.+.
T Consensus 2 ~~is~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 2 KGVNLTIQ----QGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CceeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHH
Confidence 57788877 7899999999999999999999875411 111 25555421 1222222
Q ss_pred ---------------------HHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHH
Q 040956 871 ---------------------IFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIA 926 (1085)
Q Consensus 871 ---------------------I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia 926 (1085)
++.++|..+..... +|..+.....++++| +.+|+++|||||++|+|+.....+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al--~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARAL--SIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHH--HcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 33444444333333 344444444466666 8999999999999999977755444
Q ss_pred HHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 927 YAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 927 ~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.++..+.++.++++|++||+.+.+..++++..
T Consensus 155 -~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 186 (230)
T TIGR01184 155 -EELMQIWEEHRVTVLMVTHDVDEALLLSDRVV 186 (230)
T ss_pred -HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 45555555447899999999999888887543
No 263
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.55 E-value=1.4e-14 Score=156.93 Aligned_cols=155 Identities=22% Similarity=0.136 Sum_probs=102.1
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------------hhccc
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------------AQLGC 856 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------------aqiG~ 856 (1085)
+.+.++...| ++..++++++|++. +|++++|+||||+|||||+|+++++.-. .+.+.
T Consensus 23 l~~~~~~~~~-----~~~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 93 (224)
T cd03220 23 LGILGRKGEV-----GEFWALKDVSFEVP----RGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGG 93 (224)
T ss_pred hhhhhhhhhc-----CCeEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccc
Confidence 4455555545 45789999999998 7999999999999999999999875311 01111
Q ss_pred -ccccccc----c-------cc------hHHHHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCC
Q 040956 857 -FVPCEMC----V-------LS------LADTIFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSLVILDELGR 915 (1085)
Q Consensus 857 -~VPa~~a----~-------i~------~~d~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgr 915 (1085)
+.|.... . .. .+..++..+|..+... ..+|..+.....+++++ +.+|+++|||||++
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral--~~~p~llllDEP~~ 171 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIAT--ALEPDILLIDEVLA 171 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCcc
Confidence 1121100 0 00 0122334445443333 33444444444566666 89999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 916 GTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|.|+.....+ +.++..+.++ +.++|++||+.+++..++++.
T Consensus 172 gLD~~~~~~~-~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i 212 (224)
T cd03220 172 VGDAAFQEKC-QRRLRELLKQ-GKTVILVSHDPSSIKRLCDRA 212 (224)
T ss_pred cCCHHHHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEE
Confidence 9998775544 4455566555 789999999999988877654
No 264
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.55 E-value=3.6e-14 Score=171.93 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=112.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------HH----------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------IL---------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------il---------- 851 (1085)
++|+++++.+.|-....+...+.+|++|.+. +|++++|+||||||||||||+++++. .+
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~----~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVK----EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc
Confidence 5899999998872111122469999999998 79999999999999999999997652 11
Q ss_pred -----------hhcccccccccc---ccchHH--------------------HHHHHcCCcc--------ccccccchhh
Q 040956 852 -----------AQLGCFVPCEMC---VLSLAD--------------------TIFTRLGATD--------RIMTGESTFL 889 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a---~i~~~d--------------------~I~trig~~D--------~i~~~~Stf~ 889 (1085)
.++| |+|+... .+++.+ .++.++|..+ .....+|..+
T Consensus 354 ~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 354 KPGPDGRGRAKRYIG-ILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGE 432 (520)
T ss_pred ccchhhHHHHhhhEE-EEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHH
Confidence 1244 6666431 112222 2344555532 2223344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....+|++| +.+|.++|||||++|.|+.....+ ..++..+.++.+.++|++||+.+++..++++..
T Consensus 433 ~qrv~laral--~~~p~lLllDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~ 499 (520)
T TIGR03269 433 RHRVALAQVL--IKEPRIVILDEPTGTMDPITKVDV-THSILKAREEMEQTFIIVSHDMDFVLDVCDRAA 499 (520)
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEE
Confidence 4444577777 899999999999999997775544 445556655558899999999999988887643
No 265
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2e-14 Score=168.80 Aligned_cols=160 Identities=24% Similarity=0.325 Sum_probs=121.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.++++|+.+.| ++..++++++|.+. +|++++|+|.||+|||||||+++++.-.
T Consensus 7 ~ll~~~~i~K~F-----ggV~AL~~v~l~v~----~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 7 PLLELRGISKSF-----GGVKALDGVSLTVR----PGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP 77 (500)
T ss_pred ceeeeecceEEc-----CCceeeccceeEEe----CceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCH
Confidence 689999999999 67899999999998 8999999999999999999999875410
Q ss_pred --h-hccc-cccccc------------------cc-cchHH---------HHHHHcCC---ccccccccchhhHHhHHHH
Q 040956 852 --A-QLGC-FVPCEM------------------CV-LSLAD---------TIFTRLGA---TDRIMTGESTFLVECTETA 896 (1085)
Q Consensus 852 --a-qiG~-~VPa~~------------------a~-i~~~d---------~I~trig~---~D~i~~~~Stf~~Em~ela 896 (1085)
| +.|. .|.++- .. .+++| .++.++|. .+.....+|--...|.++|
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHH
Confidence 0 1111 111111 11 22232 35666776 4445556667777788999
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
++| +.+..||||||||+.++..+... ...++..|..+ |..+||+||.++.+..++++..|.
T Consensus 158 rAl--~~~arllIlDEPTaaLt~~E~~~-Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 158 RAL--SFDARVLILDEPTAALTVKETER-LFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred HHH--hcCCCEEEEcCCcccCCHHHHHH-HHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEE
Confidence 999 77889999999999999888554 45677888775 999999999999999999987654
No 266
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.55 E-value=4.6e-14 Score=150.65 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=105.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..|+++++...|-. ....+.++++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 5 ~~l~~~~l~~~~~~---~~~~~l~~isl~i~----~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 5 GEIEVENLSVRYAP---DLPPVLKNVSFKVK----AGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred CeEEEEEEEEEeCC---CCcccccCceEEEC----CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH
Confidence 46899999988721 12479999999998 799999999999999999999977531
Q ss_pred ---Hhhccccccccccc--cchHHHH-----------HHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCC
Q 040956 851 ---LAQLGCFVPCEMCV--LSLADTI-----------FTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELG 914 (1085)
Q Consensus 851 ---laqiG~~VPa~~a~--i~~~d~I-----------~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpg 914 (1085)
..++| |+|+...- .++.+.+ ...+. .+.....+|..+.....+++++ +.+|+++|||||+
T Consensus 78 ~~~~~~i~-~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~-~~~~~~~LS~G~~qrv~laral--~~~p~llllDEP~ 153 (207)
T cd03369 78 EDLRSSLT-IIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-VSEGGLNLSQGQRQLLCLARAL--LKRPRVLVLDEAT 153 (207)
T ss_pred HHHHhhEE-EEecCCcccCccHHHHhcccCCCCHHHHHHHhh-ccCCCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCCc
Confidence 12344 66665321 1222222 12222 1122334555555555577777 8999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 915 rGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|+|+..... ...++..+. + +.++|++||+.+++.. +++
T Consensus 154 ~~LD~~~~~~-l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~ 192 (207)
T cd03369 154 ASIDYATDAL-IQKTIREEF-T-NSTILTIAHRLRTIID-YDK 192 (207)
T ss_pred ccCCHHHHHH-HHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCE
Confidence 9999776544 444555543 3 7899999999998765 544
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.55 E-value=2.1e-14 Score=174.33 Aligned_cols=164 Identities=21% Similarity=0.190 Sum_probs=112.4
Q ss_pred CEEEEEcceeeeeecC------CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------
Q 040956 789 PVLKIKGLWHPFALGE------NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~------~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------ 850 (1085)
++|+++++...|-... .++..+++|++|.+. +|++++|+||||||||||||+++++.-
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~----~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLR----PGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEc----CCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEc
Confidence 5799999998872100 013579999999998 799999999999999999999987530
Q ss_pred -----------Hhhcccccccccc-----ccchHH-----------------------HHHHHcCCc-cccccccchhhH
Q 040956 851 -----------LAQLGCFVPCEMC-----VLSLAD-----------------------TIFTRLGAT-DRIMTGESTFLV 890 (1085)
Q Consensus 851 -----------laqiG~~VPa~~a-----~i~~~d-----------------------~I~trig~~-D~i~~~~Stf~~ 890 (1085)
...+| |||+... .+++.+ .++.++|.. +......++++.
T Consensus 350 ~~~~~~~~~~~~~~i~-~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQ-VVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428 (529)
T ss_pred cccchhhHHHhhhceE-EEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence 11244 6776531 112222 234445553 222333334444
Q ss_pred H---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 891 E---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 891 E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+ ...+|++| +.+|+++|||||++|.|+.....+ ..++..+.++.++++|++||+.+++..++++..+
T Consensus 429 G~~qrv~la~al--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~ 498 (529)
T PRK15134 429 GQRQRIAIARAL--ILKPSLIILDEPTSSLDKTVQAQI-LALLKSLQQKHQLAYLFISHDLHVVRALCHQVIV 498 (529)
T ss_pred HHHHHHHHHHHH--hCCCCEEEeeCCccccCHHHHHHH-HHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEE
Confidence 4 44466666 899999999999999997775554 4456666654478999999999999888876433
No 268
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.55 E-value=3.1e-14 Score=155.03 Aligned_cols=152 Identities=20% Similarity=0.170 Sum_probs=100.2
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
+++++.+.|- .+...+.++++|++. +|++++|+||||+|||||||+++++.-
T Consensus 2 ~~~~l~~~~~---~~~~~~l~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 2 TFEHVRFRYK---PDGPVILDNISLRIK----PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWL 74 (237)
T ss_pred EEEEEEEecC---CCCccceeceEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHH
Confidence 5667776661 113579999999997 799999999999999999999987531
Q ss_pred Hhhccccccccccc--cchHHHHH---------------HHcCCcc--------------ccccccchhhHHhHHHHHHH
Q 040956 851 LAQLGCFVPCEMCV--LSLADTIF---------------TRLGATD--------------RIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 851 laqiG~~VPa~~a~--i~~~d~I~---------------trig~~D--------------~i~~~~Stf~~Em~ela~iL 899 (1085)
...+| |+|+...- .++.+.+. ...++.+ .....+|..+.....++++|
T Consensus 75 ~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 153 (237)
T cd03252 75 RRQVG-VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARAL 153 (237)
T ss_pred hhcEE-EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 11244 66665321 12222211 1111111 11234455555555577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+.+|+++|||||++|.|......+. .++..+. + ++++|++||+++++. .+++
T Consensus 154 --~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~-~~tiii~sH~~~~~~-~~d~ 205 (237)
T cd03252 154 --IHNPRILIFDEATSALDYESEHAIM-RNMHDIC-A-GRTVIIIAHRLSTVK-NADR 205 (237)
T ss_pred --hhCCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-C-CCEEEEEeCCHHHHH-hCCE
Confidence 8999999999999999977755444 4455554 3 789999999999885 3554
No 269
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.55 E-value=2.3e-14 Score=169.88 Aligned_cols=161 Identities=17% Similarity=0.083 Sum_probs=107.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc--------ccc-
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--------FVP- 859 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--------~VP- 859 (1085)
+.+.++++.+.+-.. ...++++|++|.+. +|++++|+||||+|||||||+++++.- +.-|. +++
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~----~GEivgIiGpNGSGKSTLLkiLaGLl~-P~sGeI~I~G~~~~i~~ 92 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVP----EGEIVGIIGLNGSGKSTLSNLIAGVTM-PNKGTVDIKGSAALIAI 92 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEe----CCCEEEEEcCCCCCHHHHHHHHhCCCC-CCceEEEECCEeeeEEe
Confidence 578899998777210 12468999999998 799999999999999999999988642 11121 000
Q ss_pred --ccccccchH---------------------HHHHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCC
Q 040956 860 --CEMCVLSLA---------------------DTIFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDEL 913 (1085)
Q Consensus 860 --a~~a~i~~~---------------------d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEp 913 (1085)
.-...+++. +.++..++..+.+... +|..+.....+|++| +.+|+++|||||
T Consensus 93 ~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL--~~~P~LLLLDEP 170 (549)
T PRK13545 93 SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV--HINPDILVIDEA 170 (549)
T ss_pred ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHH--HhCCCEEEEECC
Confidence 000011121 2234445554444333 444444444466666 899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 914 grGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
++|+|+.....+. .++..+.++ ++++|++||+++.+..++++..+
T Consensus 171 TsgLD~~sr~~Ll-elL~el~~~-G~TIIIVSHdl~~i~~l~DrIiv 215 (549)
T PRK13545 171 LSVGDQTFTKKCL-DKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALW 215 (549)
T ss_pred cccCCHHHHHHHH-HHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEE
Confidence 9999977655444 455566554 88999999999999888876433
No 270
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.5e-14 Score=176.70 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=115.5
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------H---------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------L--------- 851 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------l--------- 851 (1085)
.++|+++++...|-.. .+...+++|++|++. +|++++|+||||||||||||+|+++.- +
T Consensus 10 ~~~l~v~~l~~~y~~~-~~~~~~l~~is~~v~----~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~ 84 (623)
T PRK10261 10 RDVLAVENLNIAFMQE-QQKIAAVRNLSFSLQ----RGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84 (623)
T ss_pred CceEEEeceEEEecCC-CCceeEEEeeEEEEC----CCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccc
Confidence 4789999999888211 112479999999998 799999999999999999999976420 0
Q ss_pred -------------------hhccccccccc-----cccchHH----------------------HHHHHcCCcc---ccc
Q 040956 852 -------------------AQLGCFVPCEM-----CVLSLAD----------------------TIFTRLGATD---RIM 882 (1085)
Q Consensus 852 -------------------aqiG~~VPa~~-----a~i~~~d----------------------~I~trig~~D---~i~ 882 (1085)
.++| ||++.. ..+++.+ .++..+|..+ ...
T Consensus 85 ~~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 85 RQVIELSEQSAAQMRHVRGADMA-MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred ccccccccCCHHHHHHHhCCCEE-EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 1244 666642 1122222 2345556532 122
Q ss_pred c---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 883 T---GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 883 ~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
. .+|..+.....+|++| +.+|+|+|||||+.|+|+..... ...++..+.++.|.++|++||+.+++..++++..
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL--~~~P~lLllDEPt~~LD~~~~~~-l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~ 240 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMAL--SCRPAVLIADEPTTALDVTIQAQ-ILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL 240 (623)
T ss_pred CCCccCCHHHHHHHHHHHHH--hCCCCEEEEeCCCCccCHHHHHH-HHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence 3 3444444444577777 89999999999999999776554 4457777766558999999999999988888765
Q ss_pred ee
Q 040956 960 VT 961 (1085)
Q Consensus 960 V~ 961 (1085)
+.
T Consensus 241 vl 242 (623)
T PRK10261 241 VM 242 (623)
T ss_pred Ee
Confidence 54
No 271
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.54 E-value=3e-14 Score=155.25 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=99.4
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------- 850 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------- 850 (1085)
++++++..|-. .++..+.+|++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 2 ~i~~l~~~~~~--~~~~~~l~~i~~~i~----~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 2 EFKNVSFRYPS--RPDVPILKGLSLTIP----PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWL 75 (238)
T ss_pred eEEEEEEecCC--CCCccceeceEEEec----CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHH
Confidence 46666665511 112468999999987 799999999999999999999987531
Q ss_pred Hhhccccccccccc--cchHHHHH---------------HHcCCcc--------------ccccccchhhHHhHHHHHHH
Q 040956 851 LAQLGCFVPCEMCV--LSLADTIF---------------TRLGATD--------------RIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 851 laqiG~~VPa~~a~--i~~~d~I~---------------trig~~D--------------~i~~~~Stf~~Em~ela~iL 899 (1085)
..++| |+|+...- .++.+.+. ...+..+ .....+|..+.....++++|
T Consensus 76 ~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 76 RSQIG-LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred HhhEE-EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 11244 66654311 12222211 1111111 11123444444444566666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|+|+..... .+.++..+. + ++++|++||+.+++. .+++.
T Consensus 155 --~~~p~llllDEP~~gLD~~~~~~-l~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d~v 207 (238)
T cd03249 155 --LRNPKILLLDEATSALDAESEKL-VQEALDRAM-K-GRTTIVIAHRLSTIR-NADLI 207 (238)
T ss_pred --hcCCCEEEEeCccccCCHHHHHH-HHHHHHHhc-C-CCEEEEEeCCHHHHh-hCCEE
Confidence 89999999999999999777554 444555554 3 789999999999987 56553
No 272
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=7.1e-14 Score=155.02 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=107.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.|+++++...| ++..+.++++|.+. +|++++|+||||+|||||||+++++.-.
T Consensus 15 ~~l~~~~l~~~~-----~~~~vl~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 15 QKSEVNKLNFYY-----GGYQALKNINMMVH----EKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred ceEEEEEEEEEE-----CCeeeeeeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 579999999888 34579999999998 7999999999999999999999875310
Q ss_pred -------------hhccccccccccc--cchHHHH----------------------HHHcCCc-------cccccccch
Q 040956 852 -------------AQLGCFVPCEMCV--LSLADTI----------------------FTRLGAT-------DRIMTGEST 887 (1085)
Q Consensus 852 -------------aqiG~~VPa~~a~--i~~~d~I----------------------~trig~~-------D~i~~~~St 887 (1085)
..+| |+|+.... .++.+.+ +..++.. +.....+|.
T Consensus 86 ~~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 86 NILSPEVDPIEVRMRIS-MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred cccccccCHHHHhccEE-EEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 1123 56654211 1222222 1222221 111223444
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 888 f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.+.....++++| +.+|+++|||||++|.|...... ...++..+.. ++++|++||+.+.+..++++..+
T Consensus 165 G~~qrv~laral--~~~p~llllDEPt~gLD~~~~~~-l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~ 232 (265)
T PRK14252 165 GQQQRLCIARAL--ATDPEILLFDEPTSALDPIATAS-IEELISDLKN--KVTILIVTHNMQQAARVSDYTAY 232 (265)
T ss_pred HHHHHHHHHHHH--HcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEE
Confidence 444444566666 89999999999999999766544 4445566643 58999999999999888876433
No 273
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=3.4e-14 Score=154.47 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=98.9
Q ss_pred EEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------------------
Q 040956 792 KIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------------------- 851 (1085)
Q Consensus 792 ~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------------------- 851 (1085)
+++++.+.|- +...+++|++|.+. +|++++|+||||+|||||||+|+++.-.
T Consensus 2 ~~~~l~~~~~----~~~~~l~~i~~~i~----~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 2 EFENVTFAYD----PGRPVLKDVSFTIP----AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred EEEEEEEEeC----CCCceeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHH
Confidence 4667766661 23569999999997 7999999999999999999999875411
Q ss_pred -hhcccccccccc--ccchHHHH---------------HHHcCCccc--------------cccccchhhHHhHHHHHHH
Q 040956 852 -AQLGCFVPCEMC--VLSLADTI---------------FTRLGATDR--------------IMTGESTFLVECTETASVL 899 (1085)
Q Consensus 852 -aqiG~~VPa~~a--~i~~~d~I---------------~trig~~D~--------------i~~~~Stf~~Em~ela~iL 899 (1085)
..+| |+|+... ..++.+.+ ....+..+. ....+|..+.....++++|
T Consensus 74 ~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL 152 (236)
T cd03253 74 RRAIG-VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAI 152 (236)
T ss_pred HhhEE-EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence 1233 5555421 11222221 111121111 0123455444455577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+.+|+++|||||++|.|+.....+. .++..+. + +.++|++||+.+++.. +++
T Consensus 153 --~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~-~~tiii~sh~~~~~~~-~d~ 204 (236)
T cd03253 153 --LKNPPILLLDEATSALDTHTEREIQ-AALRDVS-K-GRTTIVIAHRLSTIVN-ADK 204 (236)
T ss_pred --hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-C-CCEEEEEcCCHHHHHh-CCE
Confidence 8999999999999999977655443 4555553 3 7899999999998864 543
No 274
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.54 E-value=2.5e-14 Score=174.55 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=104.3
Q ss_pred CEEEEEcceeeeeecCCC-CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------hhcccc
Q 040956 789 PVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------AQLGCF 857 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~-~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------aqiG~~ 857 (1085)
++|+++|+..-| + +..+++|++|++. +|++++|+||||+|||||||+|+++... .++| |
T Consensus 5 ~~l~i~~l~~~y-----~~~~~il~~vs~~i~----~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~-~ 74 (556)
T PRK11819 5 YIYTMNRVSKVV-----PPKKQILKDISLSFF----PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG-Y 74 (556)
T ss_pred EEEEEeeEEEEe-----CCCCeeeeCceEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-E
Confidence 579999999888 3 4689999999998 7999999999999999999999876411 2344 7
Q ss_pred cccccc---ccchHHHHH---------------------------------------------------------HHcCC
Q 040956 858 VPCEMC---VLSLADTIF---------------------------------------------------------TRLGA 877 (1085)
Q Consensus 858 VPa~~a---~i~~~d~I~---------------------------------------------------------trig~ 877 (1085)
||+... .+++.+.+. .++|.
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 776532 223333321 11122
Q ss_pred ccccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 878 TDRIMTGESTFLVE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 878 ~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
.+ .....+.++.+ ...++++| +.+|+++|||||++|+|+..... +.+.|.+ .+.++|++||+.+++..+
T Consensus 155 ~~-~~~~~~~LSgGqkqrv~la~al--~~~p~vlLLDEPt~~LD~~~~~~----l~~~L~~-~~~tviiisHd~~~~~~~ 226 (556)
T PRK11819 155 PP-WDAKVTKLSGGERRRVALCRLL--LEKPDMLLLDEPTNHLDAESVAW----LEQFLHD-YPGTVVAVTHDRYFLDNV 226 (556)
T ss_pred Cc-ccCchhhcCHHHHHHHHHHHHH--hCCCCEEEEcCCCCcCChHHHHH----HHHHHHh-CCCeEEEEeCCHHHHHhh
Confidence 11 12223344444 44466666 89999999999988888665332 3333333 356999999999999988
Q ss_pred cCcc
Q 040956 955 ASHP 958 (1085)
Q Consensus 955 ~~~~ 958 (1085)
+++.
T Consensus 227 ~d~i 230 (556)
T PRK11819 227 AGWI 230 (556)
T ss_pred cCeE
Confidence 8754
No 275
>PLN03073 ABC transporter F family; Provisional
Probab=99.54 E-value=8.4e-14 Score=173.49 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=107.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------hhccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------AQLGCFV 858 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------aqiG~~V 858 (1085)
++|+++++.+.|- +...+++|++|.+. +|++++|+||||||||||||+++++.-. ..+| |+
T Consensus 507 ~~L~~~~ls~~y~----~~~~il~~vsl~i~----~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv 577 (718)
T PLN03073 507 PIISFSDASFGYP----GGPLLFKNLNFGID----LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VF 577 (718)
T ss_pred ceEEEEeeEEEeC----CCCeeEeccEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EE
Confidence 6899999998871 23468999999998 7899999999999999999999875311 1244 55
Q ss_pred ccccc-ccc-------------------hHHHHHHHcCCcc-ccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCC
Q 040956 859 PCEMC-VLS-------------------LADTIFTRLGATD-RIMTGESTFLVE---CTETASVLQKATQDSLVILDELG 914 (1085)
Q Consensus 859 Pa~~a-~i~-------------------~~d~I~trig~~D-~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpg 914 (1085)
|+... .+. .+..++.++|..+ ......+.++.+ ...+++++ +.+|.++|||||+
T Consensus 578 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL--~~~p~lLLLDEPT 655 (718)
T PLN03073 578 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHILLLDEPS 655 (718)
T ss_pred eccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHH--hcCCCEEEEcCCC
Confidence 65321 000 1123455666653 233333444444 34466666 8999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 915 rGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+|+|..... .+++.|.+. +.++|++||+.+++..++++..
T Consensus 656 ~~LD~~s~~----~l~~~L~~~-~gtvIivSHd~~~i~~~~drv~ 695 (718)
T PLN03073 656 NHLDLDAVE----ALIQGLVLF-QGGVLMVSHDEHLISGSVDELW 695 (718)
T ss_pred CCCCHHHHH----HHHHHHHHc-CCEEEEEECCHHHHHHhCCEEE
Confidence 988866533 344555443 4599999999999998887643
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.5e-14 Score=172.05 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=102.0
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------------Hhhcccccccccc-
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------------LAQLGCFVPCEMC- 863 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------------laqiG~~VPa~~a- 863 (1085)
+..+++|++|++. +|++++|+||||||||||||+++++.- ..++| |||+...
T Consensus 10 ~~~il~~vs~~i~----~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~~ 84 (491)
T PRK10982 10 GVKALDNVNLKVR----PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS-MVHQELNL 84 (491)
T ss_pred CEEeeeeeeEEEc----CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE-EEeccccc
Confidence 4568999999997 799999999999999999999977531 11244 6666431
Q ss_pred --ccchHH------------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCC
Q 040956 864 --VLSLAD------------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLVILDELG 914 (1085)
Q Consensus 864 --~i~~~d------------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpg 914 (1085)
.+++.+ .++.++|....... .+|..+.....+|++| +.+|.++|||||+
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al--~~~p~lllLDEPt 162 (491)
T PRK10982 85 VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAF--SYNAKIVIMDEPT 162 (491)
T ss_pred ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH--HhCCCEEEEeCCC
Confidence 112222 23444554333223 3444444445577777 8999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 915 rGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|.|+.....+ ..++..+.+. +.++|++||+.+++..++++..+.
T Consensus 163 ~~LD~~~~~~l-~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l 207 (491)
T PRK10982 163 SSLTEKEVNHL-FTIIRKLKER-GCGIVYISHKMEEIFQLCDEITIL 207 (491)
T ss_pred CCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 99997765544 4566666654 889999999999998888765443
No 277
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.54 E-value=4e-14 Score=157.13 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=104.4
Q ss_pred EEEEEcceeeeeec---------------CCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhc
Q 040956 790 VLKIKGLWHPFALG---------------ENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQL 854 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~---------------~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqi 854 (1085)
.++++|++|-|-.. ......++++++|.+. +|++++|+||||+||||||++++++.-. .-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~----~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~~ 78 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAY----EGDVIGLVGINGSGKSTLSNIIGGSLSP-TV 78 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCcCC-Cc
Confidence 47777777776431 1134568899999998 7999999999999999999999886421 11
Q ss_pred c--------ccccccc---cccchHHH---------------------HHHHcCCcccccc---ccchhhHHhHHHHHHH
Q 040956 855 G--------CFVPCEM---CVLSLADT---------------------IFTRLGATDRIMT---GESTFLVECTETASVL 899 (1085)
Q Consensus 855 G--------~~VPa~~---a~i~~~d~---------------------I~trig~~D~i~~---~~Stf~~Em~ela~iL 899 (1085)
| .++++.. ..+++.+. ++..++..+.+.. .+|..+.....+++++
T Consensus 79 G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral 158 (264)
T PRK13546 79 GKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINI 158 (264)
T ss_pred eEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 1 0111111 11222222 2223343333332 3444444444466666
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|.++|||||++|+|+..... ...++..+.+ .+.++|++||+.+++..++++.
T Consensus 159 --~~~p~iLlLDEPt~gLD~~~~~~-l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 159 --TVNPDILVIDEALSVGDQTFAQK-CLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred --hhCCCEEEEeCccccCCHHHHHH-HHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEE
Confidence 89999999999999999765444 4445555654 3889999999999988877653
No 278
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.54 E-value=3.3e-14 Score=189.73 Aligned_cols=167 Identities=16% Similarity=0.195 Sum_probs=120.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
.+|+++++.+.|- .+...+.+|++|++. +|++++|+||||||||||||+|++..
T Consensus 1936 ~~L~v~nLsK~Y~---~~~~~aL~~ISf~I~----~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1936 DILRLNELTKVYS---GTSSPAVDRLCVGVR----PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred ceEEEEEEEEEEC---CCCceEEEeeEEEEc----CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHH
Confidence 5799999998881 012579999999998 89999999999999999999997653
Q ss_pred -HHhhccccccccccc---cchHH---------------------HHHHHcCCcccccc---ccchhhHHhHHHHHHHHh
Q 040956 850 -ILAQLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRIMT---GESTFLVECTETASVLQK 901 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~ 901 (1085)
...++| |+|+..+. ++..+ .++..+|..+.... .+|..+.....+|.+|
T Consensus 2009 ~~r~~IG-y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL-- 2085 (2272)
T TIGR01257 2009 DVHQNMG-YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL-- 2085 (2272)
T ss_pred HHhhhEE-EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH--
Confidence 123466 78876421 22222 23444555443333 3444444444466666
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee-ceeEE
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL-QHMAC 967 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~-~~m~~ 967 (1085)
+.+|+++|||||++|.|+..... .+.++..+.++ |+++|++||++++++.++++..+.. +++.+
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~-l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRM-LWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQC 2150 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999877544 56677777665 8999999999999999998866543 33433
No 279
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=3e-14 Score=172.05 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=112.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++++...|-. .++..+.+|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 258 ~~l~~~~l~~~~~~--~~~~~vl~~vsl~i~----~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~ 331 (506)
T PRK13549 258 VILEVRNLTAWDPV--NPHIKRVDDVSFSLR----RGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN 331 (506)
T ss_pred ceEEEecCcccccc--ccccccccceeeEEc----CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC
Confidence 57999999887611 123468999999998 799999999999999999999987531
Q ss_pred -----Hhhcccccccccc------ccchH--------------------------HHHHHHcCCc-cccc---cccchhh
Q 040956 851 -----LAQLGCFVPCEMC------VLSLA--------------------------DTIFTRLGAT-DRIM---TGESTFL 889 (1085)
Q Consensus 851 -----laqiG~~VPa~~a------~i~~~--------------------------d~I~trig~~-D~i~---~~~Stf~ 889 (1085)
...+| |||+... .+++. +.++.+++.. +... ..+|..+
T Consensus 332 ~~~~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 410 (506)
T PRK13549 332 PQQAIAQGIA-MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN 410 (506)
T ss_pred HHHHHHCCCE-EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence 01244 6665420 11222 2344555553 2222 3344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....+|++| +.+|.++|||||++|.|+..... .+.++..+.++ |.++|++||+.+++..++++..
T Consensus 411 kqrv~lA~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~ 476 (506)
T PRK13549 411 QQKAVLAKCL--LLNPKILILDEPTRGIDVGAKYE-IYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVL 476 (506)
T ss_pred HHHHHHHHHH--hhCCCEEEEcCCCCCcCHhHHHH-HHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEE
Confidence 4444577777 88999999999999999776544 55677777765 8999999999999988887643
No 280
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.8e-14 Score=172.06 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=107.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------H---hhccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------L---AQLGCFV 858 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------l---aqiG~~V 858 (1085)
+.|+++|+.+.| ++..+.++++|.+. +|++++|+||||+|||||||+|+++.- + ..+| |+
T Consensus 318 ~~l~~~~l~~~~-----~~~~~l~~is~~i~----~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~~ 387 (530)
T PRK15064 318 NALEVENLTKGF-----DNGPLFKNLNLLLE----AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIG-YY 387 (530)
T ss_pred ceEEEEeeEEee-----CCceeecCcEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EE
Confidence 589999999988 34579999999998 799999999999999999999987531 1 1244 66
Q ss_pred ccccc-----ccchHH----------------HHHHHcCCc-cccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCC
Q 040956 859 PCEMC-----VLSLAD----------------TIFTRLGAT-DRIMTGESTFLVE---CTETASVLQKATQDSLVILDEL 913 (1085)
Q Consensus 859 Pa~~a-----~i~~~d----------------~I~trig~~-D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEp 913 (1085)
|+... .+++.+ .++.++|.. +......++++.+ ...++++| +.+|.++|||||
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al--~~~p~lllLDEP 465 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM--MQKPNVLVMDEP 465 (530)
T ss_pred cccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHH--hcCCCEEEEcCC
Confidence 66421 122322 234455542 2233334444444 34466666 899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 914 grGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++|.|+..... +.+.|.+ .+.++|++||+.+++..++++..
T Consensus 466 t~~LD~~~~~~----l~~~l~~-~~~tvi~vsHd~~~~~~~~d~i~ 506 (530)
T PRK15064 466 TNHMDMESIES----LNMALEK-YEGTLIFVSHDREFVSSLATRII 506 (530)
T ss_pred CCCCCHHHHHH----HHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 99998776443 3333333 35699999999999998887543
No 281
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=4.5e-14 Score=174.39 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=114.6
Q ss_pred CCEEEEEcceeeeeecC------CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------
Q 040956 788 GPVLKIKGLWHPFALGE------NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------- 850 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~------~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------- 850 (1085)
.++|+++|+...|-... .+...+.++++|++. +|++++|+||||||||||+|+|+++.-
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~----~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~ 386 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLW----PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQ 386 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEc----CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCE
Confidence 36899999998872100 012468999999998 799999999999999999999976530
Q ss_pred -------------Hhhcccccccccc-----ccchHH----------------------HHHHHcCCc-cccccccchhh
Q 040956 851 -------------LAQLGCFVPCEMC-----VLSLAD----------------------TIFTRLGAT-DRIMTGESTFL 889 (1085)
Q Consensus 851 -------------laqiG~~VPa~~a-----~i~~~d----------------------~I~trig~~-D~i~~~~Stf~ 889 (1085)
..++| |||+... .+++.+ .++..+|.. +........++
T Consensus 387 ~i~~~~~~~~~~~~~~i~-~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 387 RIDTLSPGKLQALRRDIQ-FIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred ECCcCCHHHHHHhcCCeE-EEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 11345 7776531 112222 234445553 22233333444
Q ss_pred HH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 890 VE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 890 ~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
.+ ...+|++| +.+|.|+|||||++|+|...... ...++..+.++.+.++||+|||++++..++++..+.
T Consensus 466 gGqrQRv~iAraL--~~~p~llllDEPts~LD~~~~~~-i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl 537 (623)
T PRK10261 466 GGQRQRICIARAL--ALNPKVIIADEAVSALDVSIRGQ-IINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM 537 (623)
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44 44467777 89999999999999999776554 445666666655889999999999999888865443
No 282
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=8e-14 Score=153.08 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=105.6
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|.++++...| ++..+.++++|++. +|++++|+||||+|||||||+|+++.-
T Consensus 3 ~l~~~~v~~~~-----~~~~~l~~~s~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 3 RIEVENLNTYF-----DDAHILKNVNLDIP----KNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred EEEEEeEEEEe-----CCeEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence 47888888877 34579999999997 799999999999999999999987531
Q ss_pred ---------Hhhccccccccccc--cchHHHH----------------------HHHcCCc-------cccccccchhhH
Q 040956 851 ---------LAQLGCFVPCEMCV--LSLADTI----------------------FTRLGAT-------DRIMTGESTFLV 890 (1085)
Q Consensus 851 ---------laqiG~~VPa~~a~--i~~~d~I----------------------~trig~~-------D~i~~~~Stf~~ 890 (1085)
...+| |+|++... .++.+.+ ..++|.. +.....+|..+.
T Consensus 74 ~~~~~~~~~~~~i~-~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 74 DPAVDVVELRKKVG-MVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ 152 (250)
T ss_pred cccccHHHHhhheE-EEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence 01233 56654321 1222222 1122221 111223444444
Q ss_pred HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 891 ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 891 Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
....++++| +.+|.++|||||++|.|......+ ..++..+. + ++++|++||+.+.+..++++..
T Consensus 153 qrv~laral--~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 153 QRLCIARTI--AVSPEVILMDEPCSALDPISTTKI-EDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred HHHHHHHHH--HcCCCEEEEcCCCccCCHHHHHHH-HHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEE
Confidence 445577777 899999999999999997665544 44555553 3 6899999999999888877543
No 283
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.53 E-value=4.2e-14 Score=145.66 Aligned_cols=183 Identities=24% Similarity=0.319 Sum_probs=127.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
+++.+.++...| ++-...||++|.+. +|+.-+|+||||+||||+|-.|.+-+
T Consensus 4 ~iL~~~~vsVsF-----~GF~Aln~ls~~v~----~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 4 IILYLDGVSVSF-----GGFKALNDLSFSVD----PGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred ceEEEeceEEEE-----cceeeeeeeEEEec----CCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC
Confidence 578999998888 67789999999998 89999999999999999999996532
Q ss_pred --HHhhcccc----ccccccccc-----------------------------hHHHHHHHcCCcc---ccccccchhhHH
Q 040956 850 --ILAQLGCF----VPCEMCVLS-----------------------------LADTIFTRLGATD---RIMTGESTFLVE 891 (1085)
Q Consensus 850 --ilaqiG~~----VPa~~a~i~-----------------------------~~d~I~trig~~D---~i~~~~Stf~~E 891 (1085)
-.|+.|.- -|.-...++ -+|.++..+|..+ .....+|.....
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhh
Confidence 12344321 011111111 2334555555433 345567777788
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEec
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKS 971 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~ 971 (1085)
..|++..+ +.+|.|+++|||..|..-.+....+ .++..|+. ++.+|++.||++++..++.+..|. |-+..+..
T Consensus 155 wLEIGMll--~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVl--h~G~VL~E 227 (249)
T COG4674 155 WLEIGMLL--AQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAG--KHSILVVEHDMGFVREIADKVTVL--HEGSVLAE 227 (249)
T ss_pred hhhhheee--ccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhc--CceEEEEeccHHHHHHhhheeEEE--eccceeec
Confidence 88899988 9999999999999999877765544 46667764 689999999999999999876654 44444433
Q ss_pred CCCCcCCCCCcEEEeE
Q 040956 972 NSENYSKGDQELVFLY 987 (1085)
Q Consensus 972 ~~~~~~~~~~~i~flY 987 (1085)
++-+....+.++.-.|
T Consensus 228 Gsld~v~~dp~ViEvY 243 (249)
T COG4674 228 GSLDEVQNDPKVIEVY 243 (249)
T ss_pred ccHHHhhcCcceEeee
Confidence 3222222345555444
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.53 E-value=4.6e-14 Score=170.17 Aligned_cols=161 Identities=19% Similarity=0.160 Sum_probs=112.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
++|+++|+.+.|-. .++..+.+|++|.+. +|++++|+||||||||||||+++++.-.
T Consensus 256 ~~l~~~~l~~~~~~--~~~~~~l~~is~~i~----~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~ 329 (500)
T TIGR02633 256 VILEARNLTCWDVI--NPHRKRVDDVSFSLR----RGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRN 329 (500)
T ss_pred ceEEEeCCcccccc--cccccccccceeEEe----CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCC
Confidence 57999999876511 013468999999997 7999999999999999999999875320
Q ss_pred ------hhcccccccccc------ccc--------------------------hHHHHHHHcCCcc-cccc---ccchhh
Q 040956 852 ------AQLGCFVPCEMC------VLS--------------------------LADTIFTRLGATD-RIMT---GESTFL 889 (1085)
Q Consensus 852 ------aqiG~~VPa~~a------~i~--------------------------~~d~I~trig~~D-~i~~---~~Stf~ 889 (1085)
.++| |||++.. .++ .++.++.+++..+ .... .+|..+
T Consensus 330 ~~~~~~~~i~-~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 330 PAQAIRAGIA-MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred HHHHHhCCCE-EcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 1234 5555420 000 1223455566542 2333 344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....+|++| +.+|.|+|||||++|.|+.... ....++..+.++ |.++|++|||.+++..++++..+
T Consensus 409 kqrv~la~al--~~~p~lllLDEPt~~LD~~~~~-~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~ 475 (500)
T TIGR02633 409 QQKAVLAKML--LTNPRVLILDEPTRGVDVGAKY-EIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLV 475 (500)
T ss_pred HHHHHHHHHH--hhCCCEEEEcCCCCCcCHhHHH-HHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence 4445567777 8899999999999999976644 445567777665 88999999999999988876543
No 285
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1e-13 Score=153.61 Aligned_cols=158 Identities=18% Similarity=0.106 Sum_probs=108.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
+.+.+++.+.-| ++..+.+|++|.+. +|++++|+||||+|||||||+++++...
T Consensus 7 ~~~~~~~~~~~~-----~~~~~l~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 7 IVMDCKLDKIFY-----GNFMAVRDSHVPIR----KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred ceEEEEeEEEEe-----CCEEEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 578888887777 45679999999998 8999999999999999999999775311
Q ss_pred -----------hhcccccccccc--ccchHHH--------------------HHHHcCCcccc-------ccccchhhHH
Q 040956 852 -----------AQLGCFVPCEMC--VLSLADT--------------------IFTRLGATDRI-------MTGESTFLVE 891 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a--~i~~~d~--------------------I~trig~~D~i-------~~~~Stf~~E 891 (1085)
..+| |+|++.. ..++.+. ++..++....+ ...+|..+..
T Consensus 78 ~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q 156 (261)
T PRK14263 78 YGKGVDPVVVRRYIG-MVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQ 156 (261)
T ss_pred cccccchHhhhhceE-EEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 1233 5665421 1233332 22333332111 1224444444
Q ss_pred hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 892 CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 892 m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
...++++| +.+|+++|||||++|.|+..... .+.++..+. + +.++|++||+.+.+..++++..+.
T Consensus 157 rv~laral--~~~p~llllDEPtsgLD~~~~~~-l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 157 RLCIARAI--ATEPEVLLLDEPCSALDPIATRR-VEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred HHHHHHHH--HcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 45567777 89999999999999999776544 445555553 3 689999999999988888765443
No 286
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.52 E-value=4.5e-14 Score=149.47 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=97.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------hh
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-----------------AQ 853 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-----------------aq 853 (1085)
|.++++.+.| ++..+.+ ++|++. +|++++|+||||+|||||+|+++++.-. ..
T Consensus 2 l~~~~l~~~~-----~~~~l~~-vs~~i~----~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNI-----EQKNLFD-LSITFL----PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEE-----CCcEEEE-EEEEEc----CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhh
Confidence 5677887777 2344554 999987 7899999999999999999999875310 11
Q ss_pred ccccccccc---cccchHHH----------------HHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEe
Q 040956 854 LGCFVPCEM---CVLSLADT----------------IFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILD 911 (1085)
Q Consensus 854 iG~~VPa~~---a~i~~~d~----------------I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLD 911 (1085)
++ |+|+.. ...++.+. ++..++..+..... .|..+.....+++++ +.+|+++|||
T Consensus 72 ~~-~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al--~~~p~~lllD 148 (195)
T PRK13541 72 CT-YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI--ACQSDLWLLD 148 (195)
T ss_pred EE-eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHH--hcCCCEEEEe
Confidence 22 455432 11222222 33444544333333 334333344466666 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
||++|.|+.... ....++....+ .+.++|++||+.+.+..
T Consensus 149 EP~~~LD~~~~~-~l~~~l~~~~~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 149 EVETNLSKENRD-LLNNLIVMKAN-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred CCcccCCHHHHH-HHHHHHHHHHh-CCCEEEEEeCCccccch
Confidence 999999977644 44455554444 47899999999987654
No 287
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.52 E-value=5.1e-14 Score=154.69 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=95.6
Q ss_pred cccccccCCCC-CCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------h-hcccccccccc---ccchHH-------
Q 040956 810 VPNDILLGEDS-DDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------A-QLGCFVPCEMC---VLSLAD------- 869 (1085)
Q Consensus 810 V~ndisL~~~~-~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------a-qiG~~VPa~~a---~i~~~d------- 869 (1085)
..+|++|++.. .-.+|++++|+||||+|||||||+++++.-. . .++ |+|+... ..++.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~-~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEE-EecccccCCCCCCHHHHHHHHhh
Confidence 44555555431 0116899999999999999999999876421 1 233 6665421 122222
Q ss_pred ----------HHHHHcCCccccccccchhhH---HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 040956 870 ----------TIFTRLGATDRIMTGESTFLV---ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936 (1085)
Q Consensus 870 ----------~I~trig~~D~i~~~~Stf~~---Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~ 936 (1085)
.++..+|..+......+.++. ....++++| +.+|+++|||||++|+|+.....+ ..++..+.++
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL--~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~ 164 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL--SKDADIYLLDEPSAYLDVEQRLMA-SKVIRRFAEN 164 (246)
T ss_pred hccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHh
Confidence 234445554333333334443 344466666 899999999999999998776554 4455666654
Q ss_pred cCceEEEEEechhHHHhhcCccce
Q 040956 937 INCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 937 ~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.+.++|++||+.+++..++++..+
T Consensus 165 ~~~tiiivsHd~~~~~~~~d~i~~ 188 (246)
T cd03237 165 NEKTAFVVEHDIIMIDYLADRLIV 188 (246)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 578999999999999888876433
No 288
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.52 E-value=3.6e-14 Score=164.60 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=104.2
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------H---------------------hhccc
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------L---------------------AQLGC 856 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------l---------------------aqiG~ 856 (1085)
+...+.+|++|++. +|++++|+||||||||||||+|+++.- . .++|
T Consensus 35 g~~~~l~~vsf~i~----~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~- 109 (382)
T TIGR03415 35 GLVVGVANASLDIE----EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS- 109 (382)
T ss_pred CCEEEEEeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE-
Confidence 44567899999998 799999999999999999999966421 0 1344
Q ss_pred ccccccccc---chHHH---------------------HHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEEE
Q 040956 857 FVPCEMCVL---SLADT---------------------IFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSLVI 909 (1085)
Q Consensus 857 ~VPa~~a~i---~~~d~---------------------I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLvL 909 (1085)
|||+...-+ ++.+. ++..+|..+... ..+|..+.....++++| +.+|+++|
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL--a~~P~ILL 187 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF--AMDADILL 187 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH--hcCCCEEE
Confidence 666653221 22222 344455543333 33455555555577777 89999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 910 LDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
||||++|+|+.....+.. ++..+.++.+.|+||+||+++++..++++..+.
T Consensus 188 lDEPts~LD~~~r~~l~~-~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl 238 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQD-ELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM 238 (382)
T ss_pred EECCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999888666554 444555545889999999999998888765443
No 289
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.52 E-value=6.3e-14 Score=151.70 Aligned_cols=160 Identities=21% Similarity=0.156 Sum_probs=103.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---H---------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---L--------------- 851 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---l--------------- 851 (1085)
++.++++..-+... .+...+.++++|++. +|++++|+||||+|||||||+++++.. .
T Consensus 3 ~~~~~~~~~~~~~~-~~~~~~l~~vsl~i~----~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNW-NKYARILNDVSLHVE----SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecC-ccccccccCceEEEc----CCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChH
Confidence 45566665555210 013579999999987 799999999999999999999987643 1
Q ss_pred ---hhcccccccccc---ccchHHHHH-------------------------HHcCCccc---cccccchhhHHhHHHHH
Q 040956 852 ---AQLGCFVPCEMC---VLSLADTIF-------------------------TRLGATDR---IMTGESTFLVECTETAS 897 (1085)
Q Consensus 852 ---aqiG~~VPa~~a---~i~~~d~I~-------------------------trig~~D~---i~~~~Stf~~Em~ela~ 897 (1085)
.++| |+|+... .+++.+.+. ..++..+. ....+|..+.....+++
T Consensus 78 ~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 78 QFQKCVA-YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred HhcccEE-EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHH
Confidence 1233 5665431 123333321 11222111 11233444433444666
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech-hHHHhhcCccc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH-PLTKEFASHPH 959 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~-el~~~~~~~~~ 959 (1085)
+| +.+|+++|||||++|+|+..... ...++..+.++ +.++|++||+. +.+..++++..
T Consensus 157 al--~~~p~illlDEP~~gLD~~~~~~-~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 157 QL--LWDPKVLILDEPTSGLDSFTALN-LVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred HH--HhCCCEEEEeCCCcCCCHHHHHH-HHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEE
Confidence 66 88999999999999999776554 44466566554 78999999998 57777776543
No 290
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.52 E-value=5.8e-14 Score=151.03 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=95.7
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------------hhccccccccc
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------------------------AQLGCFVPCEM 862 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------------------------aqiG~~VPa~~ 862 (1085)
..++++++|.+. +|++++|+||||+||||||++|+++.-. ..+| |+|+..
T Consensus 14 ~~il~~vs~~i~----~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~~~q~~ 88 (218)
T cd03290 14 LATLSNINIRIP----TGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA-YAAQKP 88 (218)
T ss_pred CcceeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEE-EEcCCC
Confidence 568999999997 7999999999999999999999875310 1233 566543
Q ss_pred c--ccchHHH--------------HHHHcCCcc--------------ccccccchhhHHhHHHHHHHHhCCCCcEEEEeC
Q 040956 863 C--VLSLADT--------------IFTRLGATD--------------RIMTGESTFLVECTETASVLQKATQDSLVILDE 912 (1085)
Q Consensus 863 a--~i~~~d~--------------I~trig~~D--------------~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDE 912 (1085)
. ..++.+. +...++..+ .....+|..+.....+++++ +.+|+++||||
T Consensus 89 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral--~~~p~illlDE 166 (218)
T cd03290 89 WLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARAL--YQNTNIVFLDD 166 (218)
T ss_pred ccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHH--hhCCCEEEEeC
Confidence 2 1122222 222223211 11234555555555577777 89999999999
Q ss_pred CCCCCChHHHHHHHHH-HHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 913 LGRGTSTFDGYAIAYA-VFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 913 pgrGTs~~Dg~aia~a-vle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|+.|.|......+... +++.+.+ .+.|+|++||+.+.+. .+++
T Consensus 167 Pt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-~~d~ 210 (218)
T cd03290 167 PFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-HADW 210 (218)
T ss_pred CccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-hCCE
Confidence 9999998776655553 6666554 3789999999998875 3543
No 291
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.52 E-value=4.7e-14 Score=170.51 Aligned_cols=152 Identities=20% Similarity=0.161 Sum_probs=107.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++++.+ .+.+|++|.+. +|++++|+||||||||||||+|+++.-
T Consensus 267 ~~l~~~~l~~----------~~l~~isl~i~----~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 267 PVLTVEDLTG----------EGFRNISLEVR----AGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST 332 (510)
T ss_pred ceEEEeCCCC----------CCccceeEEEc----CCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCH
Confidence 5788888863 25789999987 799999999999999999999977531
Q ss_pred ----Hhhccccccccc------cccch------------------------HHHHHHHcCCc-cccc---cccchhhHHh
Q 040956 851 ----LAQLGCFVPCEM------CVLSL------------------------ADTIFTRLGAT-DRIM---TGESTFLVEC 892 (1085)
Q Consensus 851 ----laqiG~~VPa~~------a~i~~------------------------~d~I~trig~~-D~i~---~~~Stf~~Em 892 (1085)
...+| |+|+.. ...++ ++.++.++|.. +... ..+|..+...
T Consensus 333 ~~~~~~~i~-~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 411 (510)
T PRK15439 333 AQRLARGLV-YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQK 411 (510)
T ss_pred HHHHhCCcE-ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHH
Confidence 01244 677641 01111 12344555654 3333 3344444445
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
..+|++| +.+|.|+|||||++|.|+..... ...++..+.++ |.++|++|||.+++..++++..
T Consensus 412 l~la~al--~~~p~lLlLDEPt~gLD~~~~~~-l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~ 474 (510)
T PRK15439 412 VLIAKCL--EASPQLLIVDEPTRGVDVSARND-IYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVL 474 (510)
T ss_pred HHHHHHH--hhCCCEEEECCCCcCcChhHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEE
Confidence 5577777 88999999999999999777554 44566667665 8899999999999998887643
No 292
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.52 E-value=6.1e-14 Score=171.04 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=107.4
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------Hh---hcccc
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------LA---QLGCF 857 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------la---qiG~~ 857 (1085)
+++|+++++...| ++..+++|++|.+. +|++++|+||||||||||||+++++.. +. .+| |
T Consensus 320 ~~~l~~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~-~ 389 (552)
T TIGR03719 320 DKVIEAENLSKGF-----GDKLLIDDLSFKLP----PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLA-Y 389 (552)
T ss_pred CeEEEEeeEEEEE-----CCeeeeccceEEEc----CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEE-E
Confidence 3689999999888 34679999999998 799999999999999999999987531 11 244 6
Q ss_pred cccccc----ccchHH-------------------HHHHHcCCcc-ccccccchhhHHh---HHHHHHHHhCCCCcEEEE
Q 040956 858 VPCEMC----VLSLAD-------------------TIFTRLGATD-RIMTGESTFLVEC---TETASVLQKATQDSLVIL 910 (1085)
Q Consensus 858 VPa~~a----~i~~~d-------------------~I~trig~~D-~i~~~~Stf~~Em---~ela~iL~~at~~sLvLL 910 (1085)
+|+... .+++.+ .++.++|..+ ......++++.++ ..+|++| +.+|.++||
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al--~~~p~lllL 467 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTL--KSGGNVLLL 467 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH--hhCCCEEEE
Confidence 666421 122222 2445566532 2233334444444 4466666 899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 911 DEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
|||++|.|+.....+ .+.|.+ .+.++|++||+.+++..++++..
T Consensus 468 DEPt~~LD~~~~~~l----~~~l~~-~~~~viivsHd~~~~~~~~d~i~ 511 (552)
T TIGR03719 468 DEPTNDLDVETLRAL----EEALLE-FAGCAVVISHDRWFLDRIATHIL 511 (552)
T ss_pred eCCCCCCCHHHHHHH----HHHHHH-CCCeEEEEeCCHHHHHHhCCEEE
Confidence 999999997664433 333322 23479999999999988887543
No 293
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.51 E-value=1.5e-13 Score=153.41 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=105.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|.++|+...|.. +...+++|++|.+. +|++++|+||||+|||||||+++++.-
T Consensus 3 i~~~nls~~~~~---~~~~~l~~isl~I~----~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~l 75 (275)
T cd03289 3 MTVKDLTAKYTE---GGNAVLENISFSIS----PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKW 75 (275)
T ss_pred EEEEEEEEEeCC---CCCcceeceEEEEc----CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHH
Confidence 788999888731 23579999999998 799999999999999999999987631
Q ss_pred Hhhcccccccccccc--chHHH--------------HHHHcCCccccc---cc-----------cchhhHHhHHHHHHHH
Q 040956 851 LAQLGCFVPCEMCVL--SLADT--------------IFTRLGATDRIM---TG-----------ESTFLVECTETASVLQ 900 (1085)
Q Consensus 851 laqiG~~VPa~~a~i--~~~d~--------------I~trig~~D~i~---~~-----------~Stf~~Em~ela~iL~ 900 (1085)
...+| |+|++...+ ++.+. ....+|..+.+. .+ +|..+.....++++|
T Consensus 76 r~~i~-~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal- 153 (275)
T cd03289 76 RKAFG-VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV- 153 (275)
T ss_pred hhhEE-EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH-
Confidence 12344 677654211 12222 223444432222 12 455555555577777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+++|||||++|.|+.....+. .++..+. .++|+|++||+++.+.. +++.
T Consensus 154 -l~~p~illlDEpts~LD~~~~~~l~-~~l~~~~--~~~tii~isH~~~~i~~-~dri 206 (275)
T cd03289 154 -LSKAKILLLDEPSAHLDPITYQVIR-KTLKQAF--ADCTVILSEHRIEAMLE-CQRF 206 (275)
T ss_pred -hcCCCEEEEECccccCCHHHHHHHH-HHHHHhc--CCCEEEEEECCHHHHHh-CCEE
Confidence 8999999999999999977654444 3444432 37999999999988764 5543
No 294
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.50 E-value=8.6e-14 Score=167.88 Aligned_cols=153 Identities=17% Similarity=0.141 Sum_probs=107.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++++.. .+.++++|.+. +|++++|+||||||||||||+++++.-
T Consensus 256 ~~l~~~~l~~----------~~l~~vsl~i~----~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSG----------PGVNDVSFTLR----KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCccc----------CCcccceEEEc----CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 5788888762 36899999987 799999999999999999999976530
Q ss_pred ----Hhhcccccccccc------ccchH---------------------------HHHHHHcCCc-cccc---cccchhh
Q 040956 851 ----LAQLGCFVPCEMC------VLSLA---------------------------DTIFTRLGAT-DRIM---TGESTFL 889 (1085)
Q Consensus 851 ----laqiG~~VPa~~a------~i~~~---------------------------d~I~trig~~-D~i~---~~~Stf~ 889 (1085)
..++| |||+... .+++. +.++.++|.. +... ..+|..+
T Consensus 322 ~~~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 322 QDGLANGIV-YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HHHHHCCCE-EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 11355 7776521 11121 2344555553 2222 3344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.....+|++| +.+|.++|||||++|.|+..... ...++..+.++ |.++|++||+.+++..++++..+
T Consensus 401 kqrv~lA~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~ 467 (501)
T PRK10762 401 QQKVAIARGL--MTRPKVLILDEPTRGVDVGAKKE-IYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILV 467 (501)
T ss_pred HHHHHHHHHH--hhCCCEEEEcCCCCCCCHhHHHH-HHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEE
Confidence 4455577777 89999999999999999777554 44566667665 88999999999999888876433
No 295
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.50 E-value=8.6e-14 Score=169.90 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=106.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------Hh---hccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------LA---QLGCFV 858 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------la---qiG~~V 858 (1085)
++|+++++.+.| ++..+.+|++|++. +|++++|+||||||||||||+++++.- +. .+| |+
T Consensus 323 ~~l~~~~l~~~~-----~~~~~l~~isl~i~----~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v 392 (556)
T PRK11819 323 KVIEAENLSKSF-----GDRLLIDDLSFSLP----PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLA-YV 392 (556)
T ss_pred eEEEEEeEEEEE-----CCeeeecceeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EE
Confidence 689999999888 35679999999998 799999999999999999999987531 11 244 77
Q ss_pred cccc-c---ccchHHH-------------------HHHHcCCcc-ccccccchhhHHh---HHHHHHHHhCCCCcEEEEe
Q 040956 859 PCEM-C---VLSLADT-------------------IFTRLGATD-RIMTGESTFLVEC---TETASVLQKATQDSLVILD 911 (1085)
Q Consensus 859 Pa~~-a---~i~~~d~-------------------I~trig~~D-~i~~~~Stf~~Em---~ela~iL~~at~~sLvLLD 911 (1085)
|+.. . .+++.+. ++.++|..+ ......++++.++ ..++++| +.+|.|+|||
T Consensus 393 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al--~~~p~lllLD 470 (556)
T PRK11819 393 DQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL--KQGGNVLLLD 470 (556)
T ss_pred eCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH--hcCCCEEEEc
Confidence 7653 1 1223322 344455532 2233334444444 3466666 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
||++|.|+.....+. .++. +. +.++|++||+.+++..++++.
T Consensus 471 EPt~~LD~~~~~~l~-~~l~---~~-~~tvi~vtHd~~~~~~~~d~i 512 (556)
T PRK11819 471 EPTNDLDVETLRALE-EALL---EF-PGCAVVISHDRWFLDRIATHI 512 (556)
T ss_pred CCCCCCCHHHHHHHH-HHHH---hC-CCeEEEEECCHHHHHHhCCEE
Confidence 999999977644333 2332 22 347999999999999888753
No 296
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.50 E-value=6.9e-14 Score=153.71 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=97.2
Q ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------Hhhcccccccccc---ccc
Q 040956 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------LAQLGCFVPCEMC---VLS 866 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------laqiG~~VPa~~a---~i~ 866 (1085)
++++++|++. +|++++|+||||+|||||||+++++.- ...+| |+|+... ..+
T Consensus 11 ~l~~vsl~i~----~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~~~~t 85 (248)
T PRK03695 11 RLGPLSAEVR----AGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRA-YLSQQQTPPFAMP 85 (248)
T ss_pred eecceEEEEc----CCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheE-EecccCccCCCcc
Confidence 6789999987 799999999999999999999987531 01233 6665421 111
Q ss_pred h--------------------HHHHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCC-------CCcEEEEeCCCCC
Q 040956 867 L--------------------ADTIFTRLGATDRIMT---GESTFLVECTETASVLQKAT-------QDSLVILDELGRG 916 (1085)
Q Consensus 867 ~--------------------~d~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at-------~~sLvLLDEpgrG 916 (1085)
+ ++.++.++|..+.... .+|..+.....++++| +. +++++|||||++|
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~~~~~~p~p~llllDEPt~~ 163 (248)
T PRK03695 86 VFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVV--LQVWPDINPAGQLLLLDEPMNS 163 (248)
T ss_pred HHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH--hccccccCCCCCEEEEcCCccc
Confidence 1 2334555665543333 3444444445566666 54 5699999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 917 Ts~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+|+..... ...++..+.++ +.++|++||+.+++..++++..
T Consensus 164 LD~~~~~~-l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 164 LDVAQQAA-LDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHH-HHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEE
Confidence 99876554 44566666554 7899999999998888877543
No 297
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.50 E-value=8.9e-14 Score=169.66 Aligned_cols=154 Identities=18% Similarity=0.103 Sum_probs=103.7
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------hhccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------AQLGCFV 858 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------aqiG~~V 858 (1085)
.+|+++|+.+-|- ++..+.+|++|.+. +|++++|+||||||||||||+|+++.-. .++| ||
T Consensus 3 ~~i~~~nls~~~~----~~~~il~~is~~i~----~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v 73 (552)
T TIGR03719 3 YIYTMNRVSKVVP----PKKEILKDISLSFF----PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVG-YL 73 (552)
T ss_pred EEEEEeeEEEecC----CCCeeecCceEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EE
Confidence 5789999998881 14579999999998 7999999999999999999999876411 2344 67
Q ss_pred ccccc---ccchHHHHH---------------------------------------------------------HHcCCc
Q 040956 859 PCEMC---VLSLADTIF---------------------------------------------------------TRLGAT 878 (1085)
Q Consensus 859 Pa~~a---~i~~~d~I~---------------------------------------------------------trig~~ 878 (1085)
|+... .+++.+.+. ..+|..
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 153 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP 153 (552)
T ss_pred eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence 76532 223333321 111111
Q ss_pred --cccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 879 --DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 879 --D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
+.....+|..+.....++++| +.+|+++|||||+.|.|+..... +.+.|.+ .+.++|++||+.+++..+++
T Consensus 154 ~~~~~~~~LSgGqkqrv~la~al--~~~p~lLLLDEPt~~LD~~~~~~----l~~~L~~-~~~tvIiisHd~~~~~~~~d 226 (552)
T TIGR03719 154 PWDADVTKLSGGERRRVALCRLL--LSKPDMLLLDEPTNHLDAESVAW----LEQHLQE-YPGTVVAVTHDRYFLDNVAG 226 (552)
T ss_pred cccCchhhcCHHHHHHHHHHHHH--hcCCCEEEEcCCCCCCChHHHHH----HHHHHHh-CCCeEEEEeCCHHHHHhhcC
Confidence 111223333333344566666 89999999999988888665332 3333333 35799999999999988876
Q ss_pred cc
Q 040956 957 HP 958 (1085)
Q Consensus 957 ~~ 958 (1085)
+.
T Consensus 227 ~v 228 (552)
T TIGR03719 227 WI 228 (552)
T ss_pred eE
Confidence 53
No 298
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.50 E-value=8.1e-14 Score=186.07 Aligned_cols=161 Identities=16% Similarity=0.199 Sum_probs=117.4
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------ 849 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------ 849 (1085)
.+.|+++++++-|- .+++.+.+|++|++. +|++++|+||||||||||||+++++.
T Consensus 926 ~~~L~I~nLsK~y~---~~~k~aL~~lsl~I~----~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 926 VPGVCVKNLVKIFE---PSGRPAVDRLNITFY----ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL 998 (2272)
T ss_pred CceEEEEeEEEEec---CCCceEEEeeEEEEc----CCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchH
Confidence 35799999998882 124679999999998 79999999999999999999997753
Q ss_pred --HHhhcccccccccc---ccch---------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHH
Q 040956 850 --ILAQLGCFVPCEMC---VLSL---------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQ 900 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a---~i~~---------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~ 900 (1085)
+..++| |+|+... .+++ ++.++.++|..+......++++++ ...+|++|
T Consensus 999 ~~~r~~IG-~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArAL- 1076 (2272)
T TIGR01257 999 DAVRQSLG-MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF- 1076 (2272)
T ss_pred HHHhhcEE-EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH-
Confidence 112355 7777532 1122 233455666654444434444444 44466666
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|++||||||++|.|+..... .+.++..+. + |.++|++||++++++.++++..+.
T Consensus 1077 -i~~PkVLLLDEPTSGLDp~sr~~-l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL 1133 (2272)
T TIGR01257 1077 -VGDAKVVVLDEPTSGVDPYSRRS-IWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAII 1133 (2272)
T ss_pred -HcCCCEEEEECCCcCCCHHHHHH-HHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEE
Confidence 89999999999999999877654 556777663 3 889999999999999998876554
No 299
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=171.12 Aligned_cols=151 Identities=20% Similarity=0.166 Sum_probs=101.7
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------h---hccccccc
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------A---QLGCFVPC 860 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------a---qiG~~VPa 860 (1085)
|.++|+.+.| ++..+++|++|.+. +|++++|+||||||||||||+|++..-. . .+| |+++
T Consensus 2 i~i~nls~~~-----g~~~~l~~vs~~i~----~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~-~~~q 71 (638)
T PRK10636 2 IVFSSLQIRR-----GVRVLLDNATATIN----PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLA-WVNQ 71 (638)
T ss_pred EEEEEEEEEe-----CCceeecCcEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEec
Confidence 6788998888 56789999999998 7999999999999999999999875311 0 011 3332
Q ss_pred cc-----cccc---------------------------------------------hHHHHHHHcCCc-cccccccchhh
Q 040956 861 EM-----CVLS---------------------------------------------LADTIFTRLGAT-DRIMTGESTFL 889 (1085)
Q Consensus 861 ~~-----a~i~---------------------------------------------~~d~I~trig~~-D~i~~~~Stf~ 889 (1085)
.. ..+. .+..++..+|.. +......++++
T Consensus 72 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 151 (638)
T PRK10636 72 ETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFS 151 (638)
T ss_pred CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcC
Confidence 11 0000 011234455553 22333444555
Q ss_pred HH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 890 VE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 890 ~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++ ...+|++| +.+|+|+|||||+.|+|.... .| +.+.| ...+.++|++|||..++..++++.
T Consensus 152 gGerqRv~LA~aL--~~~P~lLLLDEPtn~LD~~~~---~~-L~~~L-~~~~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 152 GGWRMRLNLAQAL--ICRSDLLLLDEPTNHLDLDAV---IW-LEKWL-KSYQGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred HHHHHHHHHHHHH--ccCCCEEEEcCCCCcCCHHHH---HH-HHHHH-HhCCCeEEEEeCCHHHHHHhcCEE
Confidence 54 44577777 899999999999777774432 22 33333 445789999999999999888754
No 300
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.50 E-value=9.1e-14 Score=167.26 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=107.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------H----------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------L---------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------l---------- 851 (1085)
++|+++|+...+ ..+.++++|.+. +|++++|+||||||||||||+++++.- +
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLH----KGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEe----CCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH
Confidence 579999987642 358999999997 799999999999999999999976431 0
Q ss_pred -----hhcccccccccc------ccch---------------------------HHHHHHHcCCc-ccccc---ccchhh
Q 040956 852 -----AQLGCFVPCEMC------VLSL---------------------------ADTIFTRLGAT-DRIMT---GESTFL 889 (1085)
Q Consensus 852 -----aqiG~~VPa~~a------~i~~---------------------------~d~I~trig~~-D~i~~---~~Stf~ 889 (1085)
..+| |+|+... .+++ +..++.+++.. +.... .+|..+
T Consensus 318 ~~~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 396 (491)
T PRK10982 318 NEAINHGFA-LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGN 396 (491)
T ss_pred HHHHHCCCE-EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHH
Confidence 1133 5665421 0111 11233344442 22233 344444
Q ss_pred HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.....+|+++ +.+|.++|||||++|.|+..... .+.++..+.++ +.++|++|||.+++..++++..
T Consensus 397 ~qrv~la~al--~~~p~illLDEPt~gLD~~~~~~-~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~ 462 (491)
T PRK10982 397 QQKVIIGRWL--LTQPEILMLDEPTRGIDVGAKFE-IYQLIAELAKK-DKGIIIISSEMPELLGITDRIL 462 (491)
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCCcccChhHHHH-HHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEE
Confidence 4444577777 89999999999999999777554 44566677665 8899999999999998887643
No 301
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.49 E-value=2.1e-13 Score=150.70 Aligned_cols=155 Identities=15% Similarity=0.033 Sum_probs=103.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..|.++++...|-. ....++++++|.+. +|++++|+||||+|||||||++++..-
T Consensus 18 ~~i~~~~l~~~~~~---~~~~il~~isl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 18 GEIKIHDLCVRYEN---NLKPVLKHVKAYIK----PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL 90 (257)
T ss_pred ceEEEEEEEEEeCC---CCCcceeEEEEEEc----CCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH
Confidence 56899999887721 12479999999998 799999999999999999999987531
Q ss_pred ---Hhhcccccccccccc--ch--------------HHHHHHHcCCccc--------------cccccchhhHHhHHHHH
Q 040956 851 ---LAQLGCFVPCEMCVL--SL--------------ADTIFTRLGATDR--------------IMTGESTFLVECTETAS 897 (1085)
Q Consensus 851 ---laqiG~~VPa~~a~i--~~--------------~d~I~trig~~D~--------------i~~~~Stf~~Em~ela~ 897 (1085)
...+| |+|+....+ ++ +.......+..+. ....+|..+.....+++
T Consensus 91 ~~~~~~i~-~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 91 HTLRSRLS-IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred HHHhhhEE-EECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 11234 566543111 11 1111222222111 11234555554555777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+| +.+|+++|||||++|.|+.... ....++..+ .+ ++++|++||+++++.. +++
T Consensus 170 al--~~~p~llllDEPt~gLD~~~~~-~l~~~l~~~-~~-~~tiii~sh~~~~~~~-~dr 223 (257)
T cd03288 170 AF--VRKSSILIMDEATASIDMATEN-ILQKVVMTA-FA-DRTVVTIAHRVSTILD-ADL 223 (257)
T ss_pred HH--hcCCCEEEEeCCccCCCHHHHH-HHHHHHHHh-cC-CCEEEEEecChHHHHh-CCE
Confidence 77 8999999999999999977643 344455554 23 7899999999998875 544
No 302
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=3.4e-13 Score=154.23 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=110.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------------- 851 (1085)
..|.++|+.+.|-. +...+++|++|++. +|++++|+|||||||||||+++++..-.
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~----~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIK----RNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 58999999998831 23579999999998 7999999999999999999999875421
Q ss_pred -----------hhcccccccccc--ccchHHHHH----------------------HHcCCc----cccccccchhhHH-
Q 040956 852 -----------AQLGCFVPCEMC--VLSLADTIF----------------------TRLGAT----DRIMTGESTFLVE- 891 (1085)
Q Consensus 852 -----------aqiG~~VPa~~a--~i~~~d~I~----------------------trig~~----D~i~~~~Stf~~E- 891 (1085)
..+| |||+... ..++.+.|. ...+.. +.+......++.+
T Consensus 152 ~~~~~~~~~lr~~i~-~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 152 RSKKISSLELRTRIG-MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred cccccchHhhhccEE-EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 1233 6666532 123333321 222221 1122222334433
Q ss_pred --hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 892 --CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 892 --m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
...+|++| +.+++++|||||++|.|+..... ...++..+.+ ++|+|++||+++.+..++++..+.
T Consensus 231 kqRl~LARAl--~~~p~IlLLDEPts~LD~~~~~~-i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 231 QQRLCIARAI--ALEPEVLLMDEPTSALDPIATAK-IEELILELKK--KYSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred HHHHHHHHHH--HhCCCEEEEeCCcccCCHHHHHH-HHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 44467777 89999999999999999776555 4455566653 689999999999998888765544
No 303
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.48 E-value=1.9e-13 Score=153.01 Aligned_cols=152 Identities=19% Similarity=0.104 Sum_probs=102.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------hhccccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------AQLGCFVPC 860 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------aqiG~~VPa 860 (1085)
+.|+++++.+. ...+++|++|.+. +|++++|+||||+|||||||+|+++.-. ..+| |+|+
T Consensus 38 ~~l~i~nls~~-------~~~vL~~vs~~i~----~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~-yv~q 105 (282)
T cd03291 38 NNLFFSNLCLV-------GAPVLKNINLKIE----KGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS-FSSQ 105 (282)
T ss_pred CeEEEEEEEEe-------cccceeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEE-EEeC
Confidence 57999999763 2469999999998 7999999999999999999999885321 1133 6665
Q ss_pred cccc--cchHHHH--------------HHHcCCcccc--------------ccccchhhHHhHHHHHHHHhCCCCcEEEE
Q 040956 861 EMCV--LSLADTI--------------FTRLGATDRI--------------MTGESTFLVECTETASVLQKATQDSLVIL 910 (1085)
Q Consensus 861 ~~a~--i~~~d~I--------------~trig~~D~i--------------~~~~Stf~~Em~ela~iL~~at~~sLvLL 910 (1085)
.... .++.+.+ ...++..+.+ ...+|..+.....+|++| +.+|+++||
T Consensus 106 ~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL--~~~p~iLiL 183 (282)
T cd03291 106 FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV--YKDADLYLL 183 (282)
T ss_pred cccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH--hcCCCEEEE
Confidence 4321 1222222 1112221111 123455554455577777 899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 911 DEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|||++|.|+.....+...++..+. + +.++|++||+.+.+. .+++
T Consensus 184 DEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~d~ 227 (282)
T cd03291 184 DSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADK 227 (282)
T ss_pred ECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hCCE
Confidence 999999998765544444455443 3 689999999998875 4443
No 304
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.4e-13 Score=166.00 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=105.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------H----------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------L---------- 851 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------l---------- 851 (1085)
+.+.++++.. ..+.++++|.+. +|++++|+||||||||||||++++..- +
T Consensus 256 ~~l~~~~~~~---------~~~l~~isl~i~----~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 256 VRLRLDGLKG---------PGLREPISFSVR----AGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred cEEEEecccc---------CCcccceeEEEe----CCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCH
Confidence 4688888762 248899999997 799999999999999999999976420 0
Q ss_pred -----hhcccccccccc------ccch---------------------------HHHHHHHcCCc-cccccccchhhHH-
Q 040956 852 -----AQLGCFVPCEMC------VLSL---------------------------ADTIFTRLGAT-DRIMTGESTFLVE- 891 (1085)
Q Consensus 852 -----aqiG~~VPa~~a------~i~~---------------------------~d~I~trig~~-D~i~~~~Stf~~E- 891 (1085)
.++| |+|+... ..++ +..++.++|.. +.......+++.+
T Consensus 323 ~~~~~~~i~-~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 401 (501)
T PRK11288 323 RDAIRAGIM-LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGN 401 (501)
T ss_pred HHHHhCCCE-EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHH
Confidence 1233 5555310 0111 12344555652 3333333344444
Q ss_pred --hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 892 --CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 892 --m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
...+|++| +.+|.|+|||||++|.|...... ...++..+.+. |.++|++|||.+++..++++..
T Consensus 402 ~qrl~la~al--~~~p~lllLDEPt~~LD~~~~~~-l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~ 467 (501)
T PRK11288 402 QQKAILGRWL--SEDMKVILLDEPTRGIDVGAKHE-IYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIV 467 (501)
T ss_pred HHHHHHHHHH--ccCCCEEEEcCCCCCCCHhHHHH-HHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEE
Confidence 44567767 89999999999999999776555 44566667665 8899999999999998887643
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.48 E-value=1.3e-13 Score=139.33 Aligned_cols=166 Identities=21% Similarity=0.241 Sum_probs=120.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
.+|+++++...+-... +.-.|+.+++|.++ +|+.++|+||+||||||||-.++++.-
T Consensus 5 ~ii~~~~l~ktvg~~~-~~l~IL~~V~L~v~----~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 5 NIIEVHHLSKTVGQGE-GELSILKGVELVVK----RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred ceeehhhhhhhhcCCC-cceeEeecceEEec----CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCH
Confidence 3677777766553222 34689999999998 899999999999999999998876531
Q ss_pred ------H-hhccccccccccccc------------------------hHHHHHHHcCCccccccccchhhH-H--hHHHH
Q 040956 851 ------L-AQLGCFVPCEMCVLS------------------------LADTIFTRLGATDRIMTGESTFLV-E--CTETA 896 (1085)
Q Consensus 851 ------l-aqiG~~VPa~~a~i~------------------------~~d~I~trig~~D~i~~~~Stf~~-E--m~ela 896 (1085)
- .++| ||.+...-++ .....+.++|..+++....-+.++ | ...+|
T Consensus 80 d~rA~~R~~~vG-fVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 80 DARAALRARHVG-FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHHHhhcccee-EEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 1 2455 5555432222 123467888888887665544443 3 33466
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeec
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~ 963 (1085)
+++ +.+|.+++.|||+-.+|...|..|+.-++. +....|.|.+++|||..++..+.....+..+
T Consensus 159 RAf--a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~-lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G 222 (228)
T COG4181 159 RAF--AGRPDVLFADEPTGNLDRATGDKIADLLFA-LNRERGTTLVLVTHDPQLAARCDRQLRLRSG 222 (228)
T ss_pred HHh--cCCCCEEeccCCCCCcchhHHHHHHHHHHH-HhhhcCceEEEEeCCHHHHHhhhheeeeecc
Confidence 666 999999999999999999889888875554 5555699999999999999987765544443
No 306
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.48 E-value=1.6e-13 Score=170.04 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=107.0
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------Hh---hcccc
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------LA---QLGCF 857 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------la---qiG~~ 857 (1085)
.++|+++|+...| ++..+.++++|.+. +|++++|+||||||||||||+|++..- .. .+| |
T Consensus 317 ~~~l~~~~l~~~~-----~~~~il~~vsl~i~----~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y 386 (635)
T PRK11147 317 KIVFEMENVNYQI-----DGKQLVKDFSAQVQ----RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-Y 386 (635)
T ss_pred CceEEEeeeEEEE-----CCeEEEcCcEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-E
Confidence 3689999999888 45679999999998 799999999999999999999987531 11 244 6
Q ss_pred cccccc----ccchHHHH-------------------HHHcCCc-cccccccchhhHHh---HHHHHHHHhCCCCcEEEE
Q 040956 858 VPCEMC----VLSLADTI-------------------FTRLGAT-DRIMTGESTFLVEC---TETASVLQKATQDSLVIL 910 (1085)
Q Consensus 858 VPa~~a----~i~~~d~I-------------------~trig~~-D~i~~~~Stf~~Em---~ela~iL~~at~~sLvLL 910 (1085)
+++... ..++.+.+ +.+++.. +......++++.++ ..++++| +.+|.|+||
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al--~~~p~lLlL 464 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF--LKPSNLLIL 464 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHH--hcCCCEEEE
Confidence 665421 12333332 2333432 22233334444443 3466666 889999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 911 DEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
|||+.|.|..... .+.+ ++...+.++|++|||.+++..++++..+.
T Consensus 465 DEPt~~LD~~~~~----~l~~-~l~~~~~tvi~vSHd~~~~~~~~d~i~~l 510 (635)
T PRK11147 465 DEPTNDLDVETLE----LLEE-LLDSYQGTVLLVSHDRQFVDNTVTECWIF 510 (635)
T ss_pred cCCCCCCCHHHHH----HHHH-HHHhCCCeEEEEECCHHHHHHhcCEEEEE
Confidence 9998888866532 2333 33334679999999999999888765443
No 307
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=2.2e-13 Score=138.47 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=116.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------Hh
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------LA 852 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------la 852 (1085)
+.|+++|+.+.| |..-|++.++|... .|+++.|+|.+|||||||||+|-.+.- ..
T Consensus 5 ~~l~v~dlHK~~-----G~~eVLKGvSL~A~----~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 5 NALEVEDLHKRY-----GEHEVLKGVSLQAN----AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred cceehhHHHhhc-----ccchhhcceeeecC----CCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeC
Confidence 568999998888 67889999999987 799999999999999999999954331 12
Q ss_pred hccccccccccc--------------------cchH----------------------HHHHHHcCCcccccccc---ch
Q 040956 853 QLGCFVPCEMCV--------------------LSLA----------------------DTIFTRLGATDRIMTGE---ST 887 (1085)
Q Consensus 853 qiG~~VPa~~a~--------------------i~~~----------------------d~I~trig~~D~i~~~~---St 887 (1085)
.-|-.+|++... +++. ..++.++|..+.-.... |.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSG 155 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSG 155 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCc
Confidence 234444444311 1111 12455666655544433 33
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEE
Q 040956 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMAC 967 (1085)
Q Consensus 888 f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~ 967 (1085)
.......+|++| |-+|.++|+|||++.+||.-- .-...++..|+++ |.|++++||.+.++....++ |.+.|-+.
T Consensus 156 GQQQR~aIARaL--ameP~vmLFDEPTSALDPElV-gEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~--v~fLh~G~ 229 (256)
T COG4598 156 GQQQRVAIARAL--AMEPEVMLFDEPTSALDPELV-GEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSH--VIFLHQGK 229 (256)
T ss_pred hHHHHHHHHHHH--hcCCceEeecCCcccCCHHHH-HHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhh--eEEeecce
Confidence 333344477777 899999999999888887652 2356688889887 99999999999999988764 45555544
Q ss_pred E
Q 040956 968 A 968 (1085)
Q Consensus 968 ~ 968 (1085)
.
T Consensus 230 i 230 (256)
T COG4598 230 I 230 (256)
T ss_pred e
Confidence 3
No 308
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=1.6e-13 Score=138.31 Aligned_cols=155 Identities=22% Similarity=0.246 Sum_probs=102.6
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------Hhhcccccccccccc
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------------LAQLGCFVPCEMCVL 865 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------------laqiG~~VPa~~a~i 865 (1085)
++..++|+++|.+. +|++++||||+|||||||||++|.+.- ..|--+|+-+..+-+
T Consensus 14 ~~a~il~~isl~v~----~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 14 GDAKILNNISLSVR----AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred CCCeeecceeeeec----CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46789999999998 899999999999999999999987541 111111332222111
Q ss_pred ----------c-----------hHHHHHHHcCCccccccccch-hh-HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 040956 866 ----------S-----------LADTIFTRLGATDRIMTGEST-FL-VECTETASVLQKATQDSLVILDELGRGTSTFDG 922 (1085)
Q Consensus 866 ----------~-----------~~d~I~trig~~D~i~~~~St-f~-~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg 922 (1085)
+ .+-.++.|++..+.+....-+ .+ +|-+++|.+-....-|.++||||+++.+|....
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk 169 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence 1 122366778877776543322 23 344444444444689999999999999888887
Q ss_pred HHHHHHHHHHHHHhcCceEEEEEechhHHHhhc-Cccceeecee
Q 040956 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFA-SHPHVTLQHM 965 (1085)
Q Consensus 923 ~aia~avle~L~~~~~~tiL~aTH~~el~~~~~-~~~~V~~~~m 965 (1085)
..|-..+++++..+ +..++.+||+...+-..+ .+..+..+|.
T Consensus 170 r~ie~mi~~~v~~q-~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 170 RNIEEMIHRYVREQ-NVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHHhhhh-ceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 77665555555454 889999999998854444 3334444443
No 309
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.48 E-value=2.5e-13 Score=146.94 Aligned_cols=132 Identities=27% Similarity=0.257 Sum_probs=89.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHH----------------Hhhcccccccccc-----ccchHH-------------
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVI----------------LAQLGCFVPCEMC-----VLSLAD------------- 869 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~i----------------laqiG~~VPa~~a-----~i~~~d------------- 869 (1085)
+|++++|+||||+|||||||+++++.- ..++| |+|+... ..++.+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIG-YVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEE-EecccccccCCCCccHHHHHHhccccccccc
Confidence 689999999999999999999987531 12244 6665421 112222
Q ss_pred ------------HHHHHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 040956 870 ------------TIFTRLGATDRIM---TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV 934 (1085)
Q Consensus 870 ------------~I~trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~ 934 (1085)
.++..+|..+... ..+|..+.....++++| +.+|+++|+|||++|.|......+. .++..+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~ 160 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL--ATRPSVLLLDEPFTGLDMPTQELLT-ELFIELA 160 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH--hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 2334445443222 33444444455577777 8999999999999999977765544 4555665
Q ss_pred HhcCceEEEEEechhHHHhhcCccce
Q 040956 935 ERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 935 ~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
++ +.++|++||+.+.+..++++..+
T Consensus 161 ~~-~~tvii~sH~~~~~~~~~d~i~~ 185 (223)
T TIGR03771 161 GA-GTAILMTTHDLAQAMATCDRVVL 185 (223)
T ss_pred Hc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 54 88999999999998888776433
No 310
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.47 E-value=4e-13 Score=148.44 Aligned_cols=141 Identities=19% Similarity=0.147 Sum_probs=95.8
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc--------------------------------
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC-------------------------------- 856 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~-------------------------------- 856 (1085)
.+.+|+++ +. +|++++|+||||+|||||||+++++.- ..-|.
T Consensus 15 ~~l~~i~~-i~----~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 88 (255)
T cd03236 15 FKLHRLPV-PR----EGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVK 88 (255)
T ss_pred hhhhcCCC-CC----CCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccc
Confidence 57888884 55 789999999999999999999977531 11111
Q ss_pred --ccccccccc------------------chHHHHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCC
Q 040956 857 --FVPCEMCVL------------------SLADTIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLVILDEL 913 (1085)
Q Consensus 857 --~VPa~~a~i------------------~~~d~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEp 913 (1085)
++|+..... ..+..++.++|..+.... .+|..+.....+++++ +.+|+++|||||
T Consensus 89 i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral--~~~p~illlDEP 166 (255)
T cd03236 89 VIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAAL--ARDADFYFFDEP 166 (255)
T ss_pred eeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEECC
Confidence 222211100 112335566666544333 3444454455577777 889999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 914 GRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 914 grGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++|.|+.....+ ..++..+.++ ++++|++||+++++..++++..
T Consensus 167 ts~LD~~~~~~l-~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~ 210 (255)
T cd03236 167 SSYLDIKQRLNA-ARLIRELAED-DNYVLVVEHDLAVLDYLSDYIH 210 (255)
T ss_pred CCCCCHHHHHHH-HHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEE
Confidence 999997765554 4566666654 7899999999999888777543
No 311
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.46 E-value=7.9e-13 Score=163.45 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=107.3
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.++++|++..|-. .+..+++|++|+++ +|+.++|+|+||||||||+|.+.++.
T Consensus 471 ~I~~~nvsf~y~~---~~~~vL~~isL~I~----~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 471 EIEFENVSFRYGP---DDPPVLEDLSLEIP----PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA 543 (709)
T ss_pred eEEEEEEEEEeCC---CCcchhhceeEEeC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHH
Confidence 5999999999832 23479999999998 89999999999999999999996543
Q ss_pred -HHhhccccccccccc--cchHHH------------HH---HHcCCccccc--------------cccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLADT------------IF---TRLGATDRIM--------------TGESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d~------------I~---trig~~D~i~--------------~~~Stf~~Em~ela~ 897 (1085)
+..|+| +||++..- -++.|+ |. ...|+.+.+. .++|........+|+
T Consensus 544 ~lR~~ig-~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 544 SLRRQVG-YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HHHhhee-EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 445788 89987521 122222 21 1223333332 235666666667888
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
+| .++|.++||||++++.|+.....+.. -+..+. .|+|+|++||.+......+
T Consensus 623 aL--l~~P~ILlLDEaTSaLD~~sE~~I~~-~L~~~~--~~~T~I~IaHRl~ti~~ad 675 (709)
T COG2274 623 AL--LSKPKILLLDEATSALDPETEAIILQ-NLLQIL--QGRTVIIIAHRLSTIRSAD 675 (709)
T ss_pred Hh--ccCCCEEEEeCcccccCHhHHHHHHH-HHHHHh--cCCeEEEEEccchHhhhcc
Confidence 88 99999999999988877655333222 222222 2699999999998876543
No 312
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.45 E-value=4.8e-13 Score=148.51 Aligned_cols=164 Identities=20% Similarity=0.195 Sum_probs=113.6
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+.--|.... +...+.++++|++. +|++++|+|.+||||||+.++|.++.-
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~----~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~ 76 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELK----KGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEc----CCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence 67888877764221 23578999999998 899999999999999999999966431
Q ss_pred -----H----h-hcccccccccc-ccc---------------------------hHHHHHHHcCCccc---cccccchhh
Q 040956 851 -----L----A-QLGCFVPCEMC-VLS---------------------------LADTIFTRLGATDR---IMTGESTFL 889 (1085)
Q Consensus 851 -----l----a-qiG~~VPa~~a-~i~---------------------------~~d~I~trig~~D~---i~~~~Stf~ 889 (1085)
+ . .++ +||++.. .+. ..-.++..+|..+. +..-...|+
T Consensus 77 l~~~~~~~iRG~~I~-mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelS 155 (316)
T COG0444 77 LSEKELRKIRGKEIA-MIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELS 155 (316)
T ss_pred CCHHHHHhhcCceEE-EEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccC
Confidence 0 0 122 4555421 000 11224555565542 222333455
Q ss_pred HHhHH---HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeec
Q 040956 890 VECTE---TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963 (1085)
Q Consensus 890 ~Em~e---la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~ 963 (1085)
++|.+ +|.+| +.+|+|||.||||.++|..-...| ..++..|.++.|+++||+|||+.++..++++..|...
T Consensus 156 GGMrQRV~IAmal--a~~P~LlIADEPTTALDvt~QaqI-l~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 156 GGMRQRVMIAMAL--ALNPKLLIADEPTTALDVTVQAQI-LDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred CcHHHHHHHHHHH--hCCCCEEEeCCCcchhhHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 55554 55556 899999999999888886665544 4577788877899999999999999999998766543
No 313
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.45 E-value=3.8e-13 Score=144.62 Aligned_cols=140 Identities=19% Similarity=0.065 Sum_probs=89.1
Q ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccc-------cccc-----ccccchHHHHH-----
Q 040956 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF-------VPCE-----MCVLSLADTIF----- 872 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~-------VPa~-----~a~i~~~d~I~----- 872 (1085)
|.+|++|.++ +|++++|+||||||||||||+++++.- +.-|.. ++.. ...+++.+.+.
T Consensus 2 vl~~vs~~i~----~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 2 VLDKTDFVMG----YHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASL 76 (213)
T ss_pred eeeeeeEEEc----CCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHH
Confidence 6789999998 799999999999999999999988642 222221 1100 01123333321
Q ss_pred -------------HHcCCcc---ccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 040956 873 -------------TRLGATD---RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936 (1085)
Q Consensus 873 -------------trig~~D---~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~ 936 (1085)
..++..+ ......|..+.....+++++ +.+|+++|||||+.+.|+.....+...+.+.+ +
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al--~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~-~- 152 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINL--LLPCRLYIADGKLYTGDNATQLRMQAALACQL-Q- 152 (213)
T ss_pred cCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHH--hcCCCEEEECCCCccCCHHHHHHHHHHHHHHh-h-
Confidence 1112111 11223444444444466666 89999999999988888776555444443433 2
Q ss_pred cCceEEEEEechhHHHhhcCccc
Q 040956 937 INCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 937 ~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.++|++||+++.+..++++..
T Consensus 153 -~~~ii~vsH~~~~~~~~~d~i~ 174 (213)
T PRK15177 153 -QKGLIVLTHNPRLIKEHCHAFG 174 (213)
T ss_pred -CCcEEEEECCHHHHHHhcCeeE
Confidence 3579999999999888877543
No 314
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.45 E-value=3.8e-13 Score=166.65 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=98.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc----------cccc
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG----------CFVP 859 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG----------~~VP 859 (1085)
+|.++++.+.| ++..+++|++|.+. +|++++|+||||||||||||+|+++.-. .-| .++|
T Consensus 3 ~l~i~~ls~~~-----~~~~il~~is~~i~----~Ge~v~LvG~NGsGKSTLLriiaG~~~p-~~G~I~~~~~~~~~~l~ 72 (635)
T PRK11147 3 LISIHGAWLSF-----SDAPLLDNAELHIE----DNERVCLVGRNGAGKSTLMKILNGEVLL-DDGRIIYEQDLIVARLQ 72 (635)
T ss_pred EEEEeeEEEEe-----CCceeEeCcEEEEC----CCCEEEEECCCCCCHHHHHHHHcCCCCC-CCeEEEeCCCCEEEEec
Confidence 68899999888 45679999999998 7999999999999999999999875311 111 1222
Q ss_pred ccc---cccch-------------------------------------------------------HHHHHHHcCCcccc
Q 040956 860 CEM---CVLSL-------------------------------------------------------ADTIFTRLGATDRI 881 (1085)
Q Consensus 860 a~~---a~i~~-------------------------------------------------------~d~I~trig~~D~i 881 (1085)
+.. ....+ +..++..+|...
T Consensus 73 q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-- 150 (635)
T PRK11147 73 QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP-- 150 (635)
T ss_pred cCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--
Confidence 211 00001 111223333321
Q ss_pred ccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 882 MTGESTFLVE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 882 ~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
....++++++ ...+|++| +.+|+|+|||||+.|.|..... .+.+.| ...+.++|++||+..++..++++.
T Consensus 151 ~~~~~~LSgGekqRv~LAraL--~~~P~lLLLDEPt~~LD~~~~~----~L~~~L-~~~~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRAL--VSNPDVLLLDEPTNHLDIETIE----WLEGFL-KTFQGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHH--hcCCCEEEEcCCCCccCHHHHH----HHHHHH-HhCCCEEEEEeCCHHHHHHhcCeE
Confidence 1223444444 44477777 8999999999997777755422 233333 334679999999999998888754
No 315
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.4e-12 Score=134.46 Aligned_cols=144 Identities=18% Similarity=0.132 Sum_probs=103.9
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh----cc-----------ccccccccccchH----
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ----LG-----------CFVPCEMCVLSLA---- 868 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq----iG-----------~~VPa~~a~i~~~---- 868 (1085)
..+..|++|++. +|+.+++.||+||||||||+.+++++-.++ ++ ..|.++.+-+++.
T Consensus 18 ~~~le~vsL~ia----~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIA----SGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeec----CCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHH
Confidence 458999999998 789999999999999999999998763322 11 0344444444443
Q ss_pred --------------------HHHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 040956 869 --------------------DTIFTRLGATDRIMT---GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925 (1085)
Q Consensus 869 --------------------d~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~ai 925 (1085)
++++..+|..+.-.+ .+|..|....-+|++| +.+|.+++||||+...|......+
T Consensus 94 NvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARAL--a~eP~~LlLDEPfgAlDa~tRe~m 171 (259)
T COG4525 94 NVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARAL--AVEPQLLLLDEPFGALDALTREQM 171 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHh--hcCcceEeecCchhhHHHHHHHHH
Confidence 234555665444333 3444454445588888 999999999999999888876665
Q ss_pred HHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 926 a~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
-.-+++-+ +..|.-++++||+.+.+-.++++-
T Consensus 172 QelLldlw-~~tgk~~lliTH~ieEAlflatrL 203 (259)
T COG4525 172 QELLLDLW-QETGKQVLLITHDIEEALFLATRL 203 (259)
T ss_pred HHHHHHHH-HHhCCeEEEEeccHHHHHhhhhee
Confidence 55455444 456889999999999998888764
No 316
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.1e-13 Score=157.25 Aligned_cols=151 Identities=24% Similarity=0.203 Sum_probs=109.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--HHh----hccccccccc-
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--ILA----QLGCFVPCEM- 862 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--ila----qiG~~VPa~~- 862 (1085)
-|.+.++.-.| |++.++++.+|... .|+..+|+|+||+|||||||+|+--. ++. --|+++|+..
T Consensus 80 Di~~~~fdLa~-----G~k~LL~~a~L~L~----~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 80 DIHIDNFDLAY-----GGKILLNKANLTLS----RGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred ceeeeeeeeee-----cchhhhcCCceeee----cccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhh
Confidence 46777776666 68899999999987 78999999999999999999997621 111 1266666532
Q ss_pred ---cccc-------------------hHHHHHHHcCCccc-cccccchhhHHhH---HHHHHHHhCCCCcEEEEeCCCCC
Q 040956 863 ---CVLS-------------------LADTIFTRLGATDR-IMTGESTFLVECT---ETASVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 863 ---a~i~-------------------~~d~I~trig~~D~-i~~~~Stf~~Em~---ela~iL~~at~~sLvLLDEpgrG 916 (1085)
+... ++++|+.-+|..+. ......+|++++. .+|++| ..+|+|+|||||
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl--f~~pDlLLLDEP--- 225 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL--FAKPDLLLLDEP--- 225 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH--hcCCCEEeecCC---
Confidence 1111 22334445564333 3445667777643 577777 899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 917 Ts~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
||++|-.+++| +-+||.+ .+.|+|+|+||..+++..+.
T Consensus 226 TNhLDv~av~W-Le~yL~t-~~~T~liVSHDr~FLn~V~t 263 (582)
T KOG0062|consen 226 TNHLDVVAVAW-LENYLQT-WKITSLIVSHDRNFLNTVCT 263 (582)
T ss_pred cccchhHHHHH-HHHHHhh-CCceEEEEeccHHHHHHHHH
Confidence 99999998888 5556655 47899999999999887764
No 317
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=3e-13 Score=144.71 Aligned_cols=146 Identities=20% Similarity=0.166 Sum_probs=101.4
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------Hhhcccccccccccc------
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------LAQLGCFVPCEMCVL------ 865 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------laqiG~~VPa~~a~i------ 865 (1085)
..++++||+|++. +|+.++|+|+||||||||||+|+++.- ++-.+.|-|.-...-
T Consensus 39 ~~~aL~disf~i~----~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 39 EFWALKDISFEIY----KGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred eEEEecCceEEEe----CCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHH
Confidence 4589999999998 799999999999999999999988642 111112444321110
Q ss_pred -----------chHHHHHHHcCCccccccccchhhHHhH-HHHHHHHhCCCCcEEEEeCCCC-CCChHHHHHHHHHHHHH
Q 040956 866 -----------SLADTIFTRLGATDRIMTGESTFLVECT-ETASVLQKATQDSLVILDELGR-GTSTFDGYAIAYAVFRQ 932 (1085)
Q Consensus 866 -----------~~~d~I~trig~~D~i~~~~Stf~~Em~-ela~iL~~at~~sLvLLDEpgr-GTs~~Dg~aia~avle~ 932 (1085)
..+|.|...-...|-+....-+++.+|. +++..+....+|+++||||..+ |...+-.. +...++.
T Consensus 115 ~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K--~~~rl~e 192 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK--CLERLNE 192 (249)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH--HHHHHHH
Confidence 1233444444455666667777777765 6888886678999999999733 33333222 4455666
Q ss_pred HHHhcCceEEEEEechhHHHhhcCccc
Q 040956 933 LVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 933 L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.++ +.++|+|||+++.+..+|++.-
T Consensus 193 ~~~~-~~tiv~VSHd~~~I~~~Cd~~i 218 (249)
T COG1134 193 LVEK-NKTIVLVSHDLGAIKQYCDRAI 218 (249)
T ss_pred HHHc-CCEEEEEECCHHHHHHhcCeeE
Confidence 6555 6899999999999999998743
No 318
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.44 E-value=2.3e-12 Score=157.10 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=107.1
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|- ++.++++|++|.++ +|+.++|+||||+|||||++.+++..
T Consensus 322 ~i~~~~v~f~y~----~~~~~l~~i~~~i~----~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQ----DNGFSVGPINLTIK----RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeC----CCCeEEecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHH
Confidence 699999998882 23579999999998 89999999999999999999997643
Q ss_pred -HHhhccccccccccccc-------------hHHHHHHHcCCccccc--------cccchhhHHhHHHHHHHHhCCCCcE
Q 040956 850 -ILAQLGCFVPCEMCVLS-------------LADTIFTRLGATDRIM--------TGESTFLVECTETASVLQKATQDSL 907 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i~-------------~~d~I~trig~~D~i~--------~~~Stf~~Em~ela~iL~~at~~sL 907 (1085)
+..++| |||++..-+. .+.....+++..+.+. ..+|........+|+++ +.+|++
T Consensus 394 ~~~~~i~-~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal--~~~~~i 470 (547)
T PRK10522 394 DYRKLFS-AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL--AEERDI 470 (547)
T ss_pred HHhhheE-EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH--hcCCCE
Confidence 223455 7777542110 1222344555444321 23555444455577777 899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+|||||++|.|+.....+...+.+.+.. .++|+|++||..+....
T Consensus 471 lilDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tvi~itH~~~~~~~ 515 (547)
T PRK10522 471 LLLDEWAADQDPHFRREFYQVLLPLLQE-MGKTIFAISHDDHYFIH 515 (547)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEEechHHHHh
Confidence 9999999999987765555544443322 37899999999877654
No 319
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=3.7e-13 Score=138.97 Aligned_cols=155 Identities=24% Similarity=0.285 Sum_probs=109.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
++++++.+.| +.+.|.+|+++.++ +|.+..|+||||+||||||-+++-+.
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~----~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIP----KGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeec----CCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHH
Confidence 6778888887 67899999999998 78999999999999999999886543
Q ss_pred ------HHhh---------------ccccccccccccc-----hHHHHHHHcCC---ccccccccchhhHHhHHHHHHHH
Q 040956 850 ------ILAQ---------------LGCFVPCEMCVLS-----LADTIFTRLGA---TDRIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 850 ------ilaq---------------iG~~VPa~~a~i~-----~~d~I~trig~---~D~i~~~~Stf~~Em~ela~iL~ 900 (1085)
++.| .| -.|-...+++ .+++-...+.. .|+....+|.......-+|.++
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FG-RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl- 150 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFG-RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL- 150 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcC-CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee-
Confidence 2211 12 1222222222 22233333433 3333344444333333355556
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|.+-+.|+||||...+|......+. .+|+.++++.|.|++++-||..++..++++.
T Consensus 151 -aQdTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla~el~KtiviVlHDINfAS~YsD~I 206 (252)
T COG4604 151 -AQDTDYVLLDEPLNNLDMKHSVQIM-KILRRLADELGKTIVVVLHDINFASCYSDHI 206 (252)
T ss_pred -eccCcEEEecCcccccchHHHHHHH-HHHHHHHHHhCCeEEEEEecccHHHhhhhhe
Confidence 7899999999998888877776654 5788888889999999999999999988764
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=99.44 E-value=5e-13 Score=163.60 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=102.2
Q ss_pred ceeeeeecCCCC-cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc------------------
Q 040956 796 LWHPFALGENGG-LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC------------------ 856 (1085)
Q Consensus 796 lrhp~~~~~~~~-~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~------------------ 856 (1085)
+.|.| +. .+++++++ .+. +|++++|+||||+|||||||+++++.. ...|.
T Consensus 79 ~~~~y-----g~~~~~L~~l~-~i~----~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~ 147 (590)
T PRK13409 79 PVHRY-----GVNGFKLYGLP-IPK----EGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTE 147 (590)
T ss_pred ceEEe-----cCCceeEecCC-cCC----CCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChH
Confidence 56666 33 48999998 665 799999999999999999999977531 11111
Q ss_pred ----------------ccccccccc------------------chHHHHHHHcCCccccccc---cchhhHHhHHHHHHH
Q 040956 857 ----------------FVPCEMCVL------------------SLADTIFTRLGATDRIMTG---ESTFLVECTETASVL 899 (1085)
Q Consensus 857 ----------------~VPa~~a~i------------------~~~d~I~trig~~D~i~~~---~Stf~~Em~ela~iL 899 (1085)
++|+.-... ..++.++..+|..+..... +|..+.....+|++|
T Consensus 148 l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al 227 (590)
T PRK13409 148 LQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL 227 (590)
T ss_pred HHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 122211000 1123455667765444444 444444445566667
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+++++|||||++|+|+.....+ ..++..+.+ +.++|++||+.+++..++++..+.
T Consensus 228 --~~~p~lllLDEPts~LD~~~~~~l-~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl 284 (590)
T PRK13409 228 --LRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIA 284 (590)
T ss_pred --hcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 899999999999999998776554 446666654 889999999999999888775444
No 321
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.2e-12 Score=136.68 Aligned_cols=159 Identities=21% Similarity=0.175 Sum_probs=107.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------H
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------I 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------i 850 (1085)
|..+|+.... .++-+.++++|+.. +|++++|+||||+|||||||.+++-. -
T Consensus 2 i~a~nls~~~-----~Gr~ll~~vsl~~~----pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSL-----AGRRLLDGVSLDLR----PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEe-----ecceeccCcceecc----CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHH
Confidence 4566665555 46789999999987 79999999999999999999996521 1
Q ss_pred Hhhcccccccc---------------------cccc-----chHHHHHHHcCC---ccccccccchhhHHhHHHHHHHHh
Q 040956 851 LAQLGCFVPCE---------------------MCVL-----SLADTIFTRLGA---TDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 851 laqiG~~VPa~---------------------~a~i-----~~~d~I~trig~---~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
||+.-..+|+. .... .+..+.+.+.+. ..+....+|.......++|+.|..
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 22222223332 1111 123334444432 233333445544556679999987
Q ss_pred CCCC----cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 902 ATQD----SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 902 at~~----sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
..++ ..++||||++.+|...... ...+...|... |+.++.+-||+.++..++++.-+
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~-tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivl 213 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHH-TLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVL 213 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHH-HHHHHHHHHhc-CCcEEEEEccchHHHHhhheeee
Confidence 6544 4999999977777666443 44567777776 78999999999999999987543
No 322
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.43 E-value=3e-12 Score=160.20 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=104.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+++.|-. .+.++++|++|+++ +|+.++|+||||||||||+|.+++..
T Consensus 451 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~----~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRYRP---DGPLILDDVSLQIE----PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred eEEEEEEEEEcCC---CCccceeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHH
Confidence 5999999998831 23689999999998 89999999999999999999997643
Q ss_pred -HHhhccccccccccc--cchHHH--------------HHHHcCCccccc--------------cccchhhHHhHHHHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLADT--------------IFTRLGATDRIM--------------TGESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d~--------------I~trig~~D~i~--------------~~~Stf~~Em~ela~i 898 (1085)
+..++| |||++..- -++.|+ .....|..+.+. ..+|........+|++
T Consensus 524 ~lr~~i~-~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARA 602 (686)
T TIGR03797 524 AVRRQLG-VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARA 602 (686)
T ss_pred HHHhccE-EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 234566 88887532 122222 222233332221 2244444445557777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
| ..+|+++|||||+++.|+..... +.+.|.+. ++|+|++||.++.+..
T Consensus 603 l--l~~p~iLiLDEpTS~LD~~te~~----i~~~L~~~-~~T~IiItHr~~~i~~ 650 (686)
T TIGR03797 603 L--VRKPRILLFDEATSALDNRTQAI----VSESLERL-KVTRIVIAHRLSTIRN 650 (686)
T ss_pred H--hcCCCEEEEeCCccCCCHHHHHH----HHHHHHHh-CCeEEEEecChHHHHc
Confidence 7 89999999999988888766443 44444443 7899999999988765
No 323
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=155.20 Aligned_cols=167 Identities=22% Similarity=0.251 Sum_probs=121.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-----------------H-
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-----------------I- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-----------------i- 850 (1085)
+.|+++|+..-|... .+...+.+|++|++. +|++++|+|.+||||||+.+++.++. +
T Consensus 4 ~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~----~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~ 78 (539)
T COG1123 4 PLLEVENLTVEFATD-GGRVPAVRDVSFEVE----PGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL 78 (539)
T ss_pred ceEEEeceEEEEecC-CcceeeeecceEEec----CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh
Confidence 589999999888533 223469999999998 89999999999999999999985432 0
Q ss_pred ----------H-hhccccccccccc-c----c----------------------hHHHHHHHcCCcccccc--ccchhhH
Q 040956 851 ----------L-AQLGCFVPCEMCV-L----S----------------------LADTIFTRLGATDRIMT--GESTFLV 890 (1085)
Q Consensus 851 ----------l-aqiG~~VPa~~a~-i----~----------------------~~d~I~trig~~D~i~~--~~Stf~~ 890 (1085)
. ..++ +||++.+. + . -...++..+|..+.... -...|++
T Consensus 79 ~l~~~~~r~~rg~~Ia-~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSG 157 (539)
T COG1123 79 GLSEREMRKLRGKRIA-MIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSG 157 (539)
T ss_pred cCCHHHHHHhccccEE-EEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCc
Confidence 0 1233 66665311 1 1 12236777777665554 4445666
Q ss_pred HhHH---HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeece
Q 040956 891 ECTE---TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQH 964 (1085)
Q Consensus 891 Em~e---la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~ 964 (1085)
+|.+ +|.+| +.+|+|+|+||||.++|..-...| ..++..|.++.|.++||+|||++++..++++..|....
T Consensus 158 G~rQRv~iAmAL--a~~P~LLIaDEPTTaLDvt~q~qI-L~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G 231 (539)
T COG1123 158 GMRQRVMIAMAL--ALKPKLLIADEPTTALDVTTQAQI-LDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231 (539)
T ss_pred hHHHHHHHHHHH--hCCCCEEEECCCccccCHHHHHHH-HHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECC
Confidence 6655 55555 899999999999988887765444 45677777778999999999999999999987665433
No 324
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.42 E-value=3.6e-12 Score=156.76 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=102.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++++.+.|- +...|++|++|... +|+.++|+|+||+|||||++.+++..
T Consensus 333 ~~I~~~~vsf~y~----~~~~iL~~inl~i~----~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~ 404 (588)
T PRK13657 333 GAVEFDDVSFSYD----NSRQGVEDVSFEAK----PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR 404 (588)
T ss_pred CeEEEEEEEEEeC----CCCceecceeEEEC----CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH
Confidence 3699999999882 23569999999998 89999999999999999999997643
Q ss_pred --HHhhccccccccccc--cchHHHH---------------HHHcCCcc-----------cccc---ccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTI---------------FTRLGATD-----------RIMT---GESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I---------------~trig~~D-----------~i~~---~~Stf~~Em~ela 896 (1085)
+-.+++ |||++..- -++.|+| ....+..+ .+.. .+|........+|
T Consensus 405 ~~~r~~i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 405 ASLRRNIA-VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHHhheE-EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 123445 88886421 1222221 12222211 1111 2344333344577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++| +.+++++|||||++++|+.....+...+ ..+. .++|+|++||+++.+..
T Consensus 484 Ral--l~~~~iliLDEpts~LD~~t~~~i~~~l-~~~~--~~~tvIiitHr~~~~~~ 535 (588)
T PRK13657 484 RAL--LKDPPILILDEATSALDVETEAKVKAAL-DELM--KGRTTFIIAHRLSTVRN 535 (588)
T ss_pred HHH--hcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHh--cCCEEEEEEecHHHHHh
Confidence 777 8999999999999999977755443333 3332 36899999999988764
No 325
>PLN03073 ABC transporter F family; Provisional
Probab=99.42 E-value=6.2e-13 Score=165.79 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=99.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--Hh---hccccccccc-
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--LA---QLGCFVPCEM- 862 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--la---qiG~~VPa~~- 862 (1085)
..|.++|+.+-| ++..+++|++|.+. .|++++|+||||+|||||||+|++..+ .. .++ |++++.
T Consensus 176 ~~I~i~nls~~y-----~~~~ll~~isl~i~----~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~-~~~Q~~~ 245 (718)
T PLN03073 176 KDIHMENFSISV-----GGRDLIVDASVTLA----FGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL-HVEQEVV 245 (718)
T ss_pred eeEEEceEEEEe-----CCCEEEECCEEEEC----CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE-EEeccCC
Confidence 469999999988 45679999999998 799999999999999999999976321 11 111 222210
Q ss_pred -cccch-----------------------------------------------------H-------------------H
Q 040956 863 -CVLSL-----------------------------------------------------A-------------------D 869 (1085)
Q Consensus 863 -a~i~~-----------------------------------------------------~-------------------d 869 (1085)
...+. + +
T Consensus 246 g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 00000 0 0
Q ss_pred HHHHHcCCccc-cccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEE
Q 040956 870 TIFTRLGATDR-IMTGESTFLVE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945 (1085)
Q Consensus 870 ~I~trig~~D~-i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aT 945 (1085)
.++..+|..+. ......+++.+ ...++++| +.+|+|+|||||+.|+|+... ..+.+.|.+ .+.++|++|
T Consensus 326 ~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL--~~~p~lLlLDEPt~~LD~~~~----~~l~~~L~~-~~~tviivs 398 (718)
T PLN03073 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARAL--FIEPDLLLLDEPTNHLDLHAV----LWLETYLLK-WPKTFIVVS 398 (718)
T ss_pred HHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHH--hcCCCEEEEECCCCCCCHHHH----HHHHHHHHH-cCCEEEEEE
Confidence 12222333211 12223344444 44577777 899999999999777775542 224444433 488999999
Q ss_pred echhHHHhhcCcc
Q 040956 946 HYHPLTKEFASHP 958 (1085)
Q Consensus 946 H~~el~~~~~~~~ 958 (1085)
|+.+++..++++.
T Consensus 399 Hd~~~l~~~~d~i 411 (718)
T PLN03073 399 HAREFLNTVVTDI 411 (718)
T ss_pred CCHHHHHHhCCEE
Confidence 9999998887754
No 326
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.6e-12 Score=150.38 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEE--EEcceeeeeecCCCCcccccc
Q 040956 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLK--IKGLWHPFALGENGGLPVPND 813 (1085)
Q Consensus 736 ~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~--ik~lrhp~~~~~~~~~~V~nd 813 (1085)
+.-+.|.......+..|.+.+|-.. +.+.|.-.... .....+.++ .+++...|- +++++++|
T Consensus 276 ~lGs~fH~~~~g~aa~d~i~~~l~~------~~~~~~~~~~~------~~~~~~~~ei~~~~l~~~y~----~g~~~l~~ 339 (559)
T COG4988 276 DLGSFFHAAAAGEAAADKLFTLLES------PVATPGSGEKA------EVANEPPIEISLENLSFRYP----DGKPALSD 339 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhcC------CCCCCCCcccc------ccccCCCceeeecceEEecC----CCCcccCC
Confidence 3345566666667778877776431 22222111000 000112344 448777662 23499999
Q ss_pred cccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------HHhhcccccccccccc--chHH-
Q 040956 814 ILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV---------------------ILAQLGCFVPCEMCVL--SLAD- 869 (1085)
Q Consensus 814 isL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~---------------------ilaqiG~~VPa~~a~i--~~~d- 869 (1085)
++|+.. +|+.++|+|+||||||||+..+++.. +..|++ +||+..--+ ++-+
T Consensus 340 l~~t~~----~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTireN 414 (559)
T COG4988 340 LNLTIK----AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIREN 414 (559)
T ss_pred ceeEec----CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHHHH
Confidence 999998 89999999999999999999997643 223444 666543111 1111
Q ss_pred --------------HHHHHcCCccc----------cc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 040956 870 --------------TIFTRLGATDR----------IM---TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG 922 (1085)
Q Consensus 870 --------------~I~trig~~D~----------i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg 922 (1085)
....+.|..+- +. .++|........+|++| ..+++|+|+||||++.|....
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAl--l~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARAL--LSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHh--cCCCCEEEecCCccCCCHhHH
Confidence 12233332222 22 23444444455677888 899999999999999886654
Q ss_pred HHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 923 YAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 923 ~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
.+....+..+.+ +.|+|++||....+..++
T Consensus 493 -~~i~~~l~~l~~--~ktvl~itHrl~~~~~~D 522 (559)
T COG4988 493 -QIILQALQELAK--QKTVLVITHRLEDAADAD 522 (559)
T ss_pred -HHHHHHHHHHHh--CCeEEEEEcChHHHhcCC
Confidence 444455556655 589999999998877554
No 327
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=151.09 Aligned_cols=170 Identities=20% Similarity=0.233 Sum_probs=119.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.++++++.+-| ++....+||+|++. +|++.+|.|.||+||||||+++.++.-
T Consensus 3 ~~l~~~~itK~f-----~~~~And~V~l~v~----~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 3 PALEMRGITKRF-----PGVVANDDVSLSVK----KGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred ceEEEeccEEEc-----CCEEecCceeeeec----CCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH
Confidence 578999999988 45677788999998 899999999999999999999976541
Q ss_pred ----Hhhcccccccccc---ccc------------------------hHHHHHHHcCCccccccccchhhHHhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLS------------------------LADTIFTRLGATDRIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~------------------------~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL 899 (1085)
-+-|| .|-+... .++ -+..+..++|..=+.....+...+++++-..||
T Consensus 74 ~dA~~~GIG-MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 74 RDAIRLGIG-MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHHHHcCCc-EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 11233 2222110 111 123355666655444444455555555444444
Q ss_pred Hh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee-ceeEEEEe
Q 040956 900 QK-ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL-QHMACAFK 970 (1085)
Q Consensus 900 ~~-at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~-~~m~~~~~ 970 (1085)
+. ..++.|+||||||+=+.|.+...+. .++..|.+. |+++||+||-+..+..++++..|.- +++.-.++
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf-~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELF-EILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 43 6899999999999999998876654 477788776 9999999999999999999877653 33333344
No 328
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.42 E-value=1.2e-12 Score=141.23 Aligned_cols=144 Identities=18% Similarity=0.107 Sum_probs=93.6
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh----ccccccccc-----ccc--------------
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ----LGCFVPCEM-----CVL-------------- 865 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq----iG~~VPa~~-----a~i-------------- 865 (1085)
....|++|.+. +|++++++||||+||||+||++.++.+... ++.++|-.. ..+
T Consensus 38 ~AVqdisf~IP----~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 38 EAVQDISFEIP----KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhheeeeecC----CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 46789999998 899999999999999999999988654321 233555431 001
Q ss_pred chHH------HHH---------------HHcCCccccc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 040956 866 SLAD------TIF---------------TRLGATDRIM---TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921 (1085)
Q Consensus 866 ~~~d------~I~---------------trig~~D~i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~D 921 (1085)
+..| .|+ .-++...-+. ..+|....--.+++..| .++|.+++|||||-|+|..-
T Consensus 114 p~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaL--Lh~p~VLfLDEpTvgLDV~a 191 (325)
T COG4586 114 PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAAL--LHPPKVLFLDEPTVGLDVNA 191 (325)
T ss_pred hhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHh--cCCCcEEEecCCccCcchhH
Confidence 1111 011 1111211111 12222222223466666 89999999999999999776
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 922 g~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
..+|...+ ....++.++|++.+|||..-+..+|++..
T Consensus 192 q~~ir~Fl-ke~n~~~~aTVllTTH~~~di~~lc~rv~ 228 (325)
T COG4586 192 QANIREFL-KEYNEERQATVLLTTHIFDDIATLCDRVL 228 (325)
T ss_pred HHHHHHHH-HHHHHhhCceEEEEecchhhHHHhhhheE
Confidence 66655444 34445569999999999998888887643
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.41 E-value=1.3e-12 Score=159.52 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=110.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+...|-.......++++|++|.++ +|++++|+||||+|||||++.+++..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~----~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIA----QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR 411 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEc----CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 3589999998883211012479999999998 89999999999999999999996532
Q ss_pred --HHhhcccccccccccc--------------chHHHHHHHcCCccccc---------cccchhhHHhHHHHHHHHhCCC
Q 040956 850 --ILAQLGCFVPCEMCVL--------------SLADTIFTRLGATDRIM---------TGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~i--------------~~~d~I~trig~~D~i~---------~~~Stf~~Em~ela~iL~~at~ 904 (1085)
+..+++ +||++..-+ ..+.......+..+.+. ..+|........+|+++ +.+
T Consensus 412 ~~~~~~i~-~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal--l~~ 488 (555)
T TIGR01194 412 DDYRDLFS-AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW--LED 488 (555)
T ss_pred HHHHhhCc-EEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH--HcC
Confidence 223445 666653211 01122445555554332 23555555555677777 899
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|+++|||||+++.|+.....+...+++.+.. .++|+|++||+.+... .+++
T Consensus 489 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~~~~-~~d~ 539 (555)
T TIGR01194 489 RPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQYFE-LADQ 539 (555)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hCCE
Confidence 9999999999999988766655556554433 3789999999988765 3443
No 330
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.41 E-value=6e-12 Score=153.44 Aligned_cols=156 Identities=22% Similarity=0.201 Sum_probs=102.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..++++|+.+.|- .++..+++|++|+++ +|+.++|+||||||||||++.+++..
T Consensus 315 ~~i~~~~v~~~y~---~~~~~~l~~~~~~i~----~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 315 GHLSVENVTIVPP---GGKKPTLRGISFRLQ----AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred CeEEEEEEEEEcC---CCCccccccceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 3599999998882 123589999999998 89999999999999999999997643
Q ss_pred --HHhhccccccccccc--cchHHHHH------------------------HHc--CCcccccc---ccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTIF------------------------TRL--GATDRIMT---GESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I~------------------------tri--g~~D~i~~---~~Stf~~Em~ela 896 (1085)
+..++| |||++..- -++.|.|. .++ |....+.. .+|........+|
T Consensus 388 ~~~~~~i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 388 ETFGKHIG-YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HHHhhheE-EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 112344 77776421 12222221 111 11111111 2333333344477
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+++ ..+|+++|||||++|.|......+.. .+..+.. .++|+|++||..+.... +++
T Consensus 467 Ral--l~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~-~~~tvi~ith~~~~~~~-~d~ 522 (544)
T TIGR01842 467 RAL--YGDPKLVVLDEPNSNLDEEGEQALAN-AIKALKA-RGITVVVITHRPSLLGC-VDK 522 (544)
T ss_pred HHH--hcCCCEEEEeCCccccCHHHHHHHHH-HHHHHhh-CCCEEEEEeCCHHHHHh-CCE
Confidence 777 89999999999999999776544433 3334432 37899999999987653 443
No 331
>PLN03211 ABC transporter G-25; Provisional
Probab=99.41 E-value=6.4e-13 Score=164.62 Aligned_cols=145 Identities=23% Similarity=0.276 Sum_probs=101.6
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------Hhhccccccccccc---
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------LAQLGCFVPCEMCV--- 864 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------laqiG~~VPa~~a~--- 864 (1085)
++.+++|+++.+. +|++++|+|||||||||||+++++..- ..++| |||++...
T Consensus 80 ~~~iL~~vs~~i~----~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~-yv~Q~~~l~~~ 154 (659)
T PLN03211 80 ERTILNGVTGMAS----PGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG-FVTQDDILYPH 154 (659)
T ss_pred CCeeeeCCEEEEE----CCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceE-EECcccccCCc
Confidence 4679999999998 799999999999999999999987531 12344 77765311
Q ss_pred cch------------------------HHHHHHHcCCccc--------cccccchhhHHhHHHHHHHHhCCCCcEEEEeC
Q 040956 865 LSL------------------------ADTIFTRLGATDR--------IMTGESTFLVECTETASVLQKATQDSLVILDE 912 (1085)
Q Consensus 865 i~~------------------------~d~I~trig~~D~--------i~~~~Stf~~Em~ela~iL~~at~~sLvLLDE 912 (1085)
+++ ++.++..+|..+. ...++|..+.....+++.| +.+|+++||||
T Consensus 155 lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL--~~~P~iLlLDE 232 (659)
T PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM--LINPSLLILDE 232 (659)
T ss_pred CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHH--HhCCCEEEEeC
Confidence 111 2334455555331 2334566555555677777 89999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechh-HHHhhcCccce
Q 040956 913 LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHP-LTKEFASHPHV 960 (1085)
Q Consensus 913 pgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~e-l~~~~~~~~~V 960 (1085)
|++|+|+.....+. .++..+.++ |.|+|++||+++ .+..++++..+
T Consensus 233 PtsgLD~~~~~~l~-~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iil 279 (659)
T PLN03211 233 PTSGLDATAAYRLV-LTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLV 279 (659)
T ss_pred CCCCcCHHHHHHHH-HHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEE
Confidence 99999987765544 455666654 899999999987 35555555433
No 332
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.40 E-value=6.8e-12 Score=154.44 Aligned_cols=151 Identities=19% Similarity=0.123 Sum_probs=102.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..++++++...|- ++..+++|++|+++ +|+.++|+|+||||||||++.+++..
T Consensus 339 ~~i~~~~v~f~y~----~~~~il~~i~l~i~----~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 339 GRIDIDNVSFAYR----DDNLVLQNINLSVP----SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH 410 (592)
T ss_pred CeEEEEEEEEEeC----CCCceeeceeEEEc----CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH
Confidence 3589999998882 23579999999998 89999999999999999999996643
Q ss_pred --HHhhcccccccccccc--chHHH--------------HHHHcCCccccc--------------cccchhhHHhHHHHH
Q 040956 850 --ILAQLGCFVPCEMCVL--SLADT--------------IFTRLGATDRIM--------------TGESTFLVECTETAS 897 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~i--~~~d~--------------I~trig~~D~i~--------------~~~Stf~~Em~ela~ 897 (1085)
+..++| |||++..-+ ++.|+ .....|..+.+. ..+|........+|+
T Consensus 411 ~~l~~~i~-~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 411 SVLRQGVA-MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred HHHHhheE-EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 223455 888875322 22222 223333332221 123333333444777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+| +.+++++|||||+++.|+.....+...+ ..+. .++|+|++||.++....
T Consensus 490 aL--l~~~~illlDEpts~LD~~t~~~i~~~l-~~~~--~~~tvIivtHr~~~l~~ 540 (592)
T PRK10790 490 VL--VQTPQILILDEATANIDSGTEQAIQQAL-AAVR--EHTTLVVIAHRLSTIVE 540 (592)
T ss_pred HH--HhCCCEEEEeCCcccCCHHHHHHHHHHH-HHHh--CCCEEEEEecchHHHHh
Confidence 77 8999999999998888876654443333 3332 26899999999988765
No 333
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.40 E-value=6.3e-12 Score=157.52 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=104.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+...|- .+..++++|++|+++ +|+.++|+||||||||||+|++++..
T Consensus 462 ~~I~~~~vsf~Y~---~~~~~vL~~i~l~i~----~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 462 GEIEFRNVSFAYP---GQETPALDNVSLTIR----PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534 (694)
T ss_pred ceEEEEEEEEEeC---CCCccceeeeeEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH
Confidence 3599999998882 123579999999998 89999999999999999999997642
Q ss_pred --HHhhccccccccccc--cchHHHH---------------HHHcCCcccc-----------c---cccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTI---------------FTRLGATDRI-----------M---TGESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I---------------~trig~~D~i-----------~---~~~Stf~~Em~ela 896 (1085)
+..++| |||++..- -++.|+| ....++.+.+ . ..+|........+|
T Consensus 535 ~~lr~~i~-~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 535 ADLRRNIG-YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHHhccE-EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 223566 88886421 1222221 2222222211 1 12444444445577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+++ ..+|+++|||||+++.|+.....+...+ ..+. .++|+|++||.++.+..
T Consensus 614 Ral--l~~p~iliLDE~Ts~LD~~te~~i~~~l-~~~~--~~~T~iiItHrl~~~~~ 665 (694)
T TIGR03375 614 RAL--LRDPPILLLDEPTSAMDNRSEERFKDRL-KRWL--AGKTLVLVTHRTSLLDL 665 (694)
T ss_pred HHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHh--CCCEEEEEecCHHHHHh
Confidence 777 8999999999999999987765554433 3333 27899999999988754
No 334
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.39 E-value=1.5e-12 Score=132.99 Aligned_cols=141 Identities=21% Similarity=0.154 Sum_probs=96.0
Q ss_pred ccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccc---------cccc------------ccc----
Q 040956 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV---------PCEM------------CVL---- 865 (1085)
Q Consensus 811 ~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~V---------Pa~~------------a~i---- 865 (1085)
+-.+++.+. .|++++|+||+|+||||||+.|++....++-...+ |++. +.+
T Consensus 15 ~~~fdl~v~----~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~q 90 (231)
T COG3840 15 PMRFDLTVP----AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQ 90 (231)
T ss_pred eEEEEEeec----CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhh
Confidence 345556665 68999999999999999999999865443322211 2111 001
Q ss_pred -----------------chHHHHHHHcCCccc---cccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHH
Q 040956 866 -----------------SLADTIFTRLGATDR---IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAI 925 (1085)
Q Consensus 866 -----------------~~~d~I~trig~~D~---i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~ai 925 (1085)
.-++.+..++|..+. +...+|........+|+.| ..+..+++||||++.+++.-...
T Consensus 91 NigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARcl--vR~~PilLLDEPFsALdP~LR~e- 167 (231)
T COG3840 91 NIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCL--VREQPILLLDEPFSALDPALRAE- 167 (231)
T ss_pred hhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHH--hccCCeEEecCchhhcCHHHHHH-
Confidence 112335556664433 3333444433444467777 88999999999999999987655
Q ss_pred HHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 926 AYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 926 a~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
..+++..+..+.+.|+|++||..+.+..++++.
T Consensus 168 Ml~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~ 200 (231)
T COG3840 168 MLALVSQLCDERKMTLLMVTHHPEDAARIADRV 200 (231)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhce
Confidence 445677788777999999999999998888753
No 335
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1e-12 Score=135.21 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=91.0
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh-----------------------hccccccccc
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA-----------------------QLGCFVPCEM 862 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila-----------------------qiG~~VPa~~ 862 (1085)
+...+..+++|... +|+.+.|+||||+|||||||+++++.-.. .+| .-|+-.
T Consensus 13 ~e~~lf~~L~f~l~----~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG-H~~giK 87 (209)
T COG4133 13 GERTLFSDLSFTLN----AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG-HQPGIK 87 (209)
T ss_pred CcceeecceeEEEc----CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh-cccccc
Confidence 56789999999987 79999999999999999999998864111 111 112222
Q ss_pred cccchHHH------------------HHHHcCC---ccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 040956 863 CVLSLADT------------------IFTRLGA---TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921 (1085)
Q Consensus 863 a~i~~~d~------------------I~trig~---~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~D 921 (1085)
..++.+++ ....+|. .|-....+|..+.....+|+.+ ++.++|.|||||+.+.| ..
T Consensus 88 ~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~--ls~~pLWiLDEP~taLD-k~ 164 (209)
T COG4133 88 TELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLW--LSPAPLWILDEPFTALD-KE 164 (209)
T ss_pred chhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHH--cCCCCceeecCcccccC-HH
Confidence 23333332 2223332 3444455666666666788888 89999999999999988 44
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEEechh
Q 040956 922 GYAIAYAVFRQLVERINCRLLFATHYHP 949 (1085)
Q Consensus 922 g~aia~avle~L~~~~~~tiL~aTH~~e 949 (1085)
+.++...++..=..+ |..||++||..-
T Consensus 165 g~a~l~~l~~~H~~~-GGiVllttHq~l 191 (209)
T COG4133 165 GVALLTALMAAHAAQ-GGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEecCCcc
Confidence 555555554443443 777999999853
No 336
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.39 E-value=1.7e-12 Score=162.93 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=105.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. ....+++|++|+++ +|+.++|+||||||||||+|.+++..
T Consensus 477 ~I~~~~vsf~y~~---~~~~vL~~isl~i~----~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 477 YVELRNITFGYSP---LEPPLIENFSLTLQ----PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPRE 549 (710)
T ss_pred eEEEEEEEEecCC---CCCCcccceeEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHH
Confidence 5899999988831 23579999999998 89999999999999999999997643
Q ss_pred -HHhhccccccccccc--cchHHHH---------------HHHcCCccc-----------cc---cccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLADTI---------------FTRLGATDR-----------IM---TGESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d~I---------------~trig~~D~-----------i~---~~~Stf~~Em~ela~ 897 (1085)
+..++| |||++..- -++.|+| ....|+.+. +. .++|........+|+
T Consensus 550 ~lr~~i~-~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 550 VLANSVA-MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred HHHhhee-EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHH
Confidence 234566 88886421 1222222 112222221 11 124444444445777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+| +.+|+++|||||++++|+.... .+++.|.+ .++|+|++||.++.+.. +++
T Consensus 629 al--l~~p~iliLDEptS~LD~~te~----~i~~~l~~-~~~T~IiitHrl~~i~~-~D~ 680 (710)
T TIGR03796 629 AL--VRNPSILILDEATSALDPETEK----IIDDNLRR-RGCTCIIVAHRLSTIRD-CDE 680 (710)
T ss_pred HH--hhCCCEEEEECccccCCHHHHH----HHHHHHHh-cCCEEEEEecCHHHHHh-CCE
Confidence 77 8999999999998888866543 44555554 48999999999988765 443
No 337
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.39 E-value=7.4e-12 Score=157.26 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=101.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|- ++..+++|++|+++ +|+.++|+||||||||||+|.++++.
T Consensus 473 ~I~~~~vsf~y~----~~~~iL~~isl~i~----~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYG----YGSNILSDISLTIK----MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcC----CCCcceeceeEEEC----CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHH
Confidence 589999998882 24579999999998 89999999999999999999997643
Q ss_pred -HHhhccccccccccc--cchHHH----------------HHHHcCCccc-----------cc---cccchhhHHhHHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLADT----------------IFTRLGATDR-----------IM---TGESTFLVECTETA 896 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d~----------------I~trig~~D~-----------i~---~~~Stf~~Em~ela 896 (1085)
+..++| |||++..- -++.|+ .....++.+. +. ..+|........+|
T Consensus 545 ~lr~~i~-~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialA 623 (708)
T TIGR01193 545 TLRQFIN-YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623 (708)
T ss_pred HHHHheE-EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHH
Confidence 223566 88886421 112222 2222222221 11 12344444444577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+++ ..+|+++||||||++.|+.....+...+ .+..++|+|++||..+.+..
T Consensus 624 Ral--l~~p~iliLDE~Ts~LD~~te~~i~~~L----~~~~~~T~IiitHr~~~~~~ 674 (708)
T TIGR01193 624 RAL--LTDSKVLILDESTSNLDTITEKKIVNNL----LNLQDKTIIFVAHRLSVAKQ 674 (708)
T ss_pred HHH--hhCCCEEEEeCccccCCHHHHHHHHHHH----HHhcCCEEEEEecchHHHHc
Confidence 777 8999999999998888876644433333 32237899999999988754
No 338
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.39 E-value=7.8e-12 Score=153.15 Aligned_cols=151 Identities=18% Similarity=0.133 Sum_probs=102.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|.++|+...|-. .+.++++|++|.++ +|+.++|+|+||+|||||++.+++..
T Consensus 330 ~i~~~~v~f~y~~---~~~~il~~inl~i~----~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPG---RDRPALDSISLVIE----PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEcCC---CCCccccCeeEEec----CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 5899999988721 23579999999998 79999999999999999999997653
Q ss_pred -HHhhccccccccccc--cchHH----------------HHHHHcCCccc-----------cc---cccchhhHHhHHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLAD----------------TIFTRLGATDR-----------IM---TGESTFLVECTETA 896 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d----------------~I~trig~~D~-----------i~---~~~Stf~~Em~ela 896 (1085)
+..+++ |||++..- -++.| ......|..+. +. ..+|........+|
T Consensus 403 ~~~~~i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 403 SLRRQVA-LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred HHHhhce-EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 122344 88876421 11111 12223332211 11 12455555555677
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+++ +.+++++|||||+++.|......+.. .+..+. .++|+|++||+..+...
T Consensus 482 Ral--l~~~~illLDEpts~LD~~~~~~i~~-~L~~~~--~~~tiIiitH~~~~~~~ 533 (571)
T TIGR02203 482 RAL--LKDAPILILDEATSALDNESERLVQA-ALERLM--QGRTTLVIAHRLSTIEK 533 (571)
T ss_pred HHH--hcCCCEEEEeCccccCCHHHHHHHHH-HHHHHh--CCCEEEEEehhhHHHHh
Confidence 777 89999999999988888776555433 333332 36899999999988654
No 339
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=1.7e-12 Score=142.43 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=103.3
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------------HHhhccccccccccc
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------------ILAQLGCFVPCEMCV 864 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------------ilaqiG~~VPa~~a~ 864 (1085)
.-.+|++|++. .|++.+|.|-+|||||||+|++-.++ +-.+--+.|.+..+-
T Consensus 42 vGv~~~sl~v~----~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 42 VGVNDASLDVE----EGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred Eeeccceeeec----CCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 45688999987 79999999999999999999994332 111111133333222
Q ss_pred cch------------------------HHHHHHHcCCccc---cccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCC
Q 040956 865 LSL------------------------ADTIFTRLGATDR---IMTGESTFLVECTETASVLQKATQDSLVILDELGRGT 917 (1085)
Q Consensus 865 i~~------------------------~d~I~trig~~D~---i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGT 917 (1085)
+|. ....+..+|..+. ....+|..|....-+|++| +++++++|+|||++.+
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAl--a~~~~IlLMDEaFSAL 195 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL--ANDPDILLMDEAFSAL 195 (386)
T ss_pred ccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHH--ccCCCEEEecCchhhc
Confidence 221 1224556665443 3444555555555699999 9999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 918 STFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 918 s~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
||+-...+-..+++ |..+.+.|++|+|||++.+-.+.++..+.
T Consensus 196 DPLIR~~mQdeLl~-Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 196 DPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred ChHHHHHHHHHHHH-HHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 99987776555554 56667899999999999999888876554
No 340
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.39 E-value=9e-12 Score=152.80 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=102.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|-.. .++.+.+|++|+++ +|+.++|+||||+|||||+|.+++..
T Consensus 336 ~~i~~~~v~f~y~~~--~~~~iL~~inl~i~----~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~ 409 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR--PDQPALDGLNLTVR----PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP 409 (576)
T ss_pred ceEEEEEEEEECCCC--CCCccccceeEEec----CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH
Confidence 358999999888321 12579999999998 89999999999999999999997643
Q ss_pred --HHhhcccccccccc--ccchHHHH---------------HHHcCCc-----------cccccc---cchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADTI---------------FTRLGAT-----------DRIMTG---ESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~I---------------~trig~~-----------D~i~~~---~Stf~~Em~ela 896 (1085)
+..++| |+|++.. .-++.|+| ....|.. ..+..+ +|........+|
T Consensus 410 ~~~~~~i~-~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 410 AELRARMA-LVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred HHHHHhce-EEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence 123455 8887642 11222221 1222221 112122 333333344577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+++ ..+++++|||||+++.|+..... ....+..+. .++|+|++||+.+....
T Consensus 489 Ral--~~~~~ililDEpts~lD~~~~~~-i~~~l~~~~--~~~t~IiitH~~~~~~~ 540 (576)
T TIGR02204 489 RAI--LKDAPILLLDEATSALDAESEQL-VQQALETLM--KGRTTLIIAHRLATVLK 540 (576)
T ss_pred HHH--HhCCCeEEEeCcccccCHHHHHH-HHHHHHHHh--CCCEEEEEecchHHHHh
Confidence 777 89999999999999988775433 333344432 37899999999988764
No 341
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.38 E-value=1e-11 Score=152.55 Aligned_cols=151 Identities=20% Similarity=0.137 Sum_probs=100.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. ++..+++|++|+++ +|+.++|+||||+|||||++.++++.
T Consensus 341 ~i~~~~vsf~y~~---~~~~il~~i~l~i~----~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTYPG---KEVPALRNINFKIP----AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEecCC---CCCccccCceEEeC----CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHH
Confidence 5999999888721 23579999999998 89999999999999999999997753
Q ss_pred -HHhhccccccccccc--cchHHHH----------------HHHcCCccc---ccc-----------ccchhhHHhHHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLADTI----------------FTRLGATDR---IMT-----------GESTFLVECTETA 896 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d~I----------------~trig~~D~---i~~-----------~~Stf~~Em~ela 896 (1085)
+..++| |||++..- -++.++| ....|..+. +.. .+|........+|
T Consensus 414 ~~~~~i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 414 SLRNQVA-LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492 (582)
T ss_pred HHHhhce-EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence 123445 88886421 1122222 112222111 111 1333333344477
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++| ..+|+++|||||+++.|+.....+...+. .+. .++|+|++||..+.+..
T Consensus 493 Ral--l~~~~ililDEptsaLD~~t~~~i~~~l~-~~~--~~~tvI~VtHr~~~~~~ 544 (582)
T PRK11176 493 RAL--LRDSPILILDEATSALDTESERAIQAALD-ELQ--KNRTSLVIAHRLSTIEK 544 (582)
T ss_pred HHH--HhCCCEEEEECccccCCHHHHHHHHHHHH-HHh--CCCEEEEEecchHHHHh
Confidence 777 89999999999988888776554443332 222 36899999999988765
No 342
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.37 E-value=1.4e-11 Score=151.55 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=101.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..++++|+...|- +...+++|++|.++ +|+.++|+||||+|||||++++++..
T Consensus 333 ~~i~~~~v~~~y~----~~~~~l~~i~~~i~----~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 333 GAVEFRHITFEFA----NSSQGVFDVSFEAK----AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404 (585)
T ss_pred CeEEEEEEEEECC----CCCccccceeEEEc----CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH
Confidence 3599999998882 23568999999998 79999999999999999999996643
Q ss_pred --HHhhcccccccccc--ccchHHHH---------------HHHcCCccc-----------cc---cccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADTI---------------FTRLGATDR-----------IM---TGESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~I---------------~trig~~D~-----------i~---~~~Stf~~Em~ela 896 (1085)
+..++| |||++.. ..++.|.| ....+..+. +. ..+|........+|
T Consensus 405 ~~~~~~i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 405 ESLRKSIA-TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred HHHHhheE-EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 112344 7777642 11222222 111111111 11 12344333344577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++| +.+|+++|||||++|.|......+.. .+..+. .+.|+|++||+.+.+..
T Consensus 484 Ral--l~~p~ililDEpts~LD~~~~~~i~~-~l~~~~--~~~tvI~isH~~~~~~~ 535 (585)
T TIGR01192 484 RAI--LKNAPILVLDEATSALDVETEARVKN-AIDALR--KNRTTFIIAHRLSTVRN 535 (585)
T ss_pred HHH--hcCCCEEEEECCccCCCHHHHHHHHH-HHHHHh--CCCEEEEEEcChHHHHc
Confidence 777 89999999999999999777555443 344442 27899999999988754
No 343
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.37 E-value=3.2e-12 Score=136.01 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=86.8
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------H------------Hhhccccccccccc
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV---------------I------------LAQLGCFVPCEMCV 864 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~---------------i------------laqiG~~VPa~~a~ 864 (1085)
.+++++.. +| +++|+||||+||||||++++++. + .+++| +|++....
T Consensus 14 ~~~~l~~~----~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~vfq~~~~ 87 (197)
T cd03278 14 DKTTIPFP----PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT-LTFDNSDG 87 (197)
T ss_pred CCeeeecC----CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE-EEEEcCCC
Confidence 45566655 56 99999999999999999997653 1 12233 45543221
Q ss_pred ------cchHHHHHHHcCCccccccccchhhHHhHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 040956 865 ------LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936 (1085)
Q Consensus 865 ------i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~ 936 (1085)
..-++.++..-+..+.....+|..+..+..+++++.. ..++.++|||||++|.|+.....+. .++..+.+
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~- 165 (197)
T cd03278 88 RYSIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK- 165 (197)
T ss_pred ceeEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-
Confidence 1223445555333344445566666666667777632 3567999999999999977655443 35555533
Q ss_pred cCceEEEEEechhHHH
Q 040956 937 INCRLLFATHYHPLTK 952 (1085)
Q Consensus 937 ~~~tiL~aTH~~el~~ 952 (1085)
+.++|++||+++++.
T Consensus 166 -~~tiIiitH~~~~~~ 180 (197)
T cd03278 166 -ETQFIVITHRKGTME 180 (197)
T ss_pred -CCEEEEEECCHHHHh
Confidence 678999999998764
No 344
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=3.4e-12 Score=129.23 Aligned_cols=164 Identities=22% Similarity=0.256 Sum_probs=112.6
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------ 849 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------ 849 (1085)
+|.+.+.++.|-| +...-..|++|+.- +|++++|+|.+||||||||++|+.-.
T Consensus 4 ~PLL~V~~lsk~Y-----g~~~gc~~vsF~l~----PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~d 74 (258)
T COG4107 4 KPLLSVSGLSKLY-----GPGKGCRDVSFDLY----PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRD 74 (258)
T ss_pred Ccceeehhhhhhh-----CCCcCccccceeec----CCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchh
Confidence 3789999999998 56677889999987 89999999999999999999995421
Q ss_pred -----------HH-hhccccccccc---cc--------cc-----h----HHH-------HHHHcCC-ccccccccchhh
Q 040956 850 -----------IL-AQLGCFVPCEM---CV--------LS-----L----ADT-------IFTRLGA-TDRIMTGESTFL 889 (1085)
Q Consensus 850 -----------il-aqiG~~VPa~~---a~--------i~-----~----~d~-------I~trig~-~D~i~~~~Stf~ 889 (1085)
+| ...| ||-+.. .+ ++ + +-+ .+.++.+ .+++..-.-+|+
T Consensus 75 l~~msEaeRR~L~RTeWG-~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFS 153 (258)
T COG4107 75 LYTMSEAERRRLLRTEWG-FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFS 153 (258)
T ss_pred HhhhchHHHHHHhhhccc-eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccc
Confidence 00 1123 332211 00 10 0 011 1222221 334445556787
Q ss_pred HHhHHHHHHHHh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 890 VECTETASVLQK-ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 890 ~Em~ela~iL~~-at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
++|++--.|.++ .|.|.||++|||+-|+|..- .+-...++..|....+..++++|||+..+.+++++..|..
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSV-QARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk 226 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV-QARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK 226 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhh-HHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeec
Confidence 777764444333 79999999999999998544 3334557777777788899999999999999998865543
No 345
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.36 E-value=4e-12 Score=157.82 Aligned_cols=159 Identities=21% Similarity=0.290 Sum_probs=110.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
+.|+++|+.+-|-.. .+...+++|++|++. +|++++|+||||+|||||||+++++.-
T Consensus 3 ~~l~~~nl~~~y~~~-~~~~~il~~vs~~i~----~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 3 ALLELKDIRRSYPSG-EEQVEVLKGISLDIY----AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDA 77 (648)
T ss_pred cEEEEeeEEEEeCCC-CCCeeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCH
Confidence 478999998887311 112469999999998 799999999999999999999977531
Q ss_pred -------Hhhccccccccccc---cchHH---------------------HHHHHcCCccccc---cccchhhHHhHHHH
Q 040956 851 -------LAQLGCFVPCEMCV---LSLAD---------------------TIFTRLGATDRIM---TGESTFLVECTETA 896 (1085)
Q Consensus 851 -------laqiG~~VPa~~a~---i~~~d---------------------~I~trig~~D~i~---~~~Stf~~Em~ela 896 (1085)
...+| |+|+.... ++..+ .++.++|..+.+. ..+|..+.....++
T Consensus 78 ~~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 78 DALAQLRREHFG-FIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HHHHHHHhccEE-EEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence 11234 66654321 12222 2334455444333 33455555555677
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|+++|||||+.|+|...... ...+++.+.++ +.++|++||+.+++.. +++.
T Consensus 157 raL--~~~P~lLllDEP~~gLD~~s~~~-l~~ll~~l~~~-g~tilivsH~~~~~~~-~d~i 213 (648)
T PRK10535 157 RAL--MNGGQVILADEPTGALDSHSGEE-VMAILHQLRDR-GHTVIIVTHDPQVAAQ-AERV 213 (648)
T ss_pred HHH--hcCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHhc-CCEEEEECCCHHHHHh-CCEE
Confidence 777 89999999999999999766544 44566666554 8899999999998864 5543
No 346
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.36 E-value=4.8e-12 Score=149.84 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=115.7
Q ss_pred CCEEEEEcceeeeeecC------CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------
Q 040956 788 GPVLKIKGLWHPFALGE------NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------- 851 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~------~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------- 851 (1085)
.|.++++|+..-|.... .+...+.+||+|++. +|++++|+|++||||||+.|+++++.--
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~----~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~ 353 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLR----EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEec----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCc
Confidence 37899999998886321 123567999999998 8999999999999999999999775421
Q ss_pred ---------------hhccccccccc--ccc----------------------chHHHHHHHcCCccc-cccccchhhHH
Q 040956 852 ---------------AQLGCFVPCEM--CVL----------------------SLADTIFTRLGATDR-IMTGESTFLVE 891 (1085)
Q Consensus 852 ---------------aqiG~~VPa~~--a~i----------------------~~~d~I~trig~~D~-i~~~~Stf~~E 891 (1085)
-|++.--|-.+ -.. ..++.++.++|...+ +......|+++
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 01110001000 000 124446777776654 33333445443
Q ss_pred h-H--HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 892 C-T--ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 892 m-~--ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
- + .+|++| +.+|.+||+|||++.+|+.-...+. .++..|.++.|.+.||+|||+.++..++++..|..
T Consensus 434 QrQRvaIARAL--a~~P~lli~DEp~SaLDvsvqa~Vl-nLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~ 504 (539)
T COG1123 434 QRQRVAIARAL--ALEPKLLILDEPVSALDVSVQAQVL-NLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMY 504 (539)
T ss_pred hhHHHHHHHHH--hcCCCEEEecCCccccCHHHHHHHH-HHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEE
Confidence 2 3 366666 9999999999997777766555444 35556677789999999999999999999876654
No 347
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.36 E-value=3.8e-12 Score=158.30 Aligned_cols=152 Identities=21% Similarity=0.163 Sum_probs=103.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------hhccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL----------AQLGCFV 858 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il----------aqiG~~V 858 (1085)
..|+++|+..-+. ++..+.+|++|.+. +|++++|+||||+|||||+|+++++.-. .++| ||
T Consensus 450 ~~i~~~nv~~~~~----~~~~il~~isl~i~----~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~-~v 520 (659)
T TIGR00954 450 NGIKFENIPLVTP----NGDVLIESLSFEVP----SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLF-YV 520 (659)
T ss_pred CeEEEEeeEEECC----CCCeeeecceEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEE-EE
Confidence 4689999887552 23579999999998 7999999999999999999999875311 1244 77
Q ss_pred cccccc--cchHH----------------------HHHHHcCCccccc------------cccchhhHHhHHHHHHHHhC
Q 040956 859 PCEMCV--LSLAD----------------------TIFTRLGATDRIM------------TGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 859 Pa~~a~--i~~~d----------------------~I~trig~~D~i~------------~~~Stf~~Em~ela~iL~~a 902 (1085)
|++..- .++.+ .++..++..+.+. ..+|..+.....+|+++ +
T Consensus 521 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal--~ 598 (659)
T TIGR00954 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF--Y 598 (659)
T ss_pred CCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH--H
Confidence 775310 01222 2344445433222 23444444455577777 8
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
.+|+++|||||++|.|+.... .+.+.+.+ .++|+|++||+.++.. .+++
T Consensus 599 ~~p~illLDEpts~LD~~~~~----~l~~~l~~-~~~tvI~isH~~~~~~-~~d~ 647 (659)
T TIGR00954 599 HKPQFAILDECTSAVSVDVEG----YMYRLCRE-FGITLFSVSHRKSLWK-YHEY 647 (659)
T ss_pred cCCCEEEEeCCccCCCHHHHH----HHHHHHHH-cCCEEEEEeCchHHHH-hCCE
Confidence 999999999999998876533 23344434 4899999999999864 3443
No 348
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.35 E-value=2.3e-12 Score=147.34 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=85.9
Q ss_pred EEeCCCCCcchHHhhhhhHHH-------------------Hhhcccccccccc---ccchHH------------------
Q 040956 830 LTGPNMGGKSTLLRATCLAVI-------------------LAQLGCFVPCEMC---VLSLAD------------------ 869 (1085)
Q Consensus 830 ItGpNgsGKSTLLR~i~~i~i-------------------laqiG~~VPa~~a---~i~~~d------------------ 869 (1085)
|+||||||||||||+|+++.- ..++| |+|+... .+++.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHIN-MVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 689999999999999987531 11244 6666532 122222
Q ss_pred ---HHHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 040956 870 ---TIFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943 (1085)
Q Consensus 870 ---~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~ 943 (1085)
.++..+|..+..... +|..+.....++++| +.+|+++|||||++|+|+..... ...++..+.++.+.|+|+
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL--~~~p~lllLDEP~s~LD~~~~~~-l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARAL--VFKPKILLLDEPLSALDKKLRDQ-MQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEeCCCccCCHHHHHH-HHHHHHHHHHhcCCEEEE
Confidence 234445554333333 444444444566667 89999999999999999776554 445556665555889999
Q ss_pred EEechhHHHhhcCcccee
Q 040956 944 ATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 944 aTH~~el~~~~~~~~~V~ 961 (1085)
+||+.+.+..++++..+.
T Consensus 157 vTHd~~e~~~~~d~i~vl 174 (325)
T TIGR01187 157 VTHDQEEAMTMSDRIAIM 174 (325)
T ss_pred EeCCHHHHHHhCCEEEEE
Confidence 999999988888876544
No 349
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.35 E-value=2e-11 Score=149.76 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=105.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+...|-. +...+++|++|+++ +|+.++|+||||+|||||++.+++..
T Consensus 337 ~~i~~~~v~f~y~~---~~~~il~~i~~~i~----~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~ 409 (574)
T PRK11160 337 VSLTLNNVSFTYPD---QPQPVLKGLSLQIK----AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409 (574)
T ss_pred CeEEEEEEEEECCC---CCCcceecceEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH
Confidence 46999999988821 12579999999998 89999999999999999999997643
Q ss_pred --HHhhccccccccccc--cchHH---------------HHHHHcCCcccccc-------------ccchhhHHhHHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLAD---------------TIFTRLGATDRIMT-------------GESTFLVECTETAS 897 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d---------------~I~trig~~D~i~~-------------~~Stf~~Em~ela~ 897 (1085)
+..++| |||++..- -++.| ......+..+.+.. .+|........+|+
T Consensus 410 ~~~r~~i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialAR 488 (574)
T PRK11160 410 AALRQAIS-VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR 488 (574)
T ss_pred HHHHhhee-EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHH
Confidence 223455 88876421 12222 23344454443321 13333333444777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++ +.+|+++|||||+++.|+.....+...+ ..+. .++|+|++||.++.+..
T Consensus 489 al--l~~~~ililDE~ts~lD~~t~~~i~~~l-~~~~--~~~tviiitHr~~~~~~ 539 (574)
T PRK11160 489 AL--LHDAPLLLLDEPTEGLDAETERQILELL-AEHA--QNKTVLMITHRLTGLEQ 539 (574)
T ss_pred HH--hcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHc--CCCEEEEEecChhHHHh
Confidence 77 8999999999999999977755444433 3332 27899999999988764
No 350
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.35 E-value=2.4e-11 Score=148.93 Aligned_cols=151 Identities=19% Similarity=0.127 Sum_probs=101.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|.++++...|-. ++.+++++++|.++ +|+.++|+||||||||||++.+++..
T Consensus 313 ~I~~~~v~~~y~~---~~~~~l~~i~~~i~----~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQ---TDHPALENVNFTLK----PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCC---CCCccccCeeEEEC----CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHH
Confidence 4888888776621 23579999999998 89999999999999999999997643
Q ss_pred -HHhhcccccccccccc--chHHHH---------------HHHcCCcccc--------------ccccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLADTI---------------FTRLGATDRI--------------MTGESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d~I---------------~trig~~D~i--------------~~~~Stf~~Em~ela~ 897 (1085)
+..++| |||++..-+ ++.++| ....+..+.+ ...+|........+|+
T Consensus 386 ~~~~~i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 386 SWRSRLA-VVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIAR 464 (569)
T ss_pred HHHhheE-EEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 123344 777654211 222221 2222322211 1124444444445777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++ +.+|+++|||||++|.|+.....+... +..+. .++|+|++||+.+....
T Consensus 465 al--l~~~~illlDEpts~LD~~~~~~i~~~-l~~~~--~~~tii~itH~~~~~~~ 515 (569)
T PRK10789 465 AL--LLNAEILILDDALSAVDGRTEHQILHN-LRQWG--EGRTVIISAHRLSALTE 515 (569)
T ss_pred HH--hcCCCEEEEECccccCCHHHHHHHHHH-HHHHh--CCCEEEEEecchhHHHc
Confidence 77 999999999999999997775554443 33332 37899999999987654
No 351
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=7e-12 Score=136.71 Aligned_cols=167 Identities=19% Similarity=0.147 Sum_probs=116.6
Q ss_pred CEEEEEcceeeeeecC--CCC--cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccc---
Q 040956 789 PVLKIKGLWHPFALGE--NGG--LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE--- 861 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~--~~~--~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~--- 861 (1085)
++++++|+.+-|.... ... ..+.+||+|++. +|++++|+|.+||||||+-|++.++.- +..|......
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~----~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i 77 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIK----EGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKDI 77 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEc----CCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcch
Confidence 5789999988775321 111 378899999998 899999999999999999999977532 2223222211
Q ss_pred -----ccccchHHHHHHHcCCcccc-cc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 040956 862 -----MCVLSLADTIFTRLGATDRI-MT---GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932 (1085)
Q Consensus 862 -----~a~i~~~d~I~trig~~D~i-~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~ 932 (1085)
......+..++..+|..... .. ..|....+...+|++| +.+|+|+++|||.+.+|..-... ...++.+
T Consensus 78 ~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL--al~P~liV~DEpvSaLDvSiqaq-IlnLL~d 154 (268)
T COG4608 78 TKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL--ALNPKLIVADEPVSALDVSVQAQ-ILNLLKD 154 (268)
T ss_pred hhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH--hhCCcEEEecCchhhcchhHHHH-HHHHHHH
Confidence 11223345577778865433 33 3444444445588888 99999999999966666433333 4457777
Q ss_pred HHHhcCceEEEEEechhHHHhhcCccceeec
Q 040956 933 LVERINCRLLFATHYHPLTKEFASHPHVTLQ 963 (1085)
Q Consensus 933 L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~ 963 (1085)
|.++.|.+.||+|||...+..++++..|+..
T Consensus 155 lq~~~~lt~lFIsHDL~vv~~isdri~VMy~ 185 (268)
T COG4608 155 LQEELGLTYLFISHDLSVVRYISDRIAVMYL 185 (268)
T ss_pred HHHHhCCeEEEEEEEHHhhhhhcccEEEEec
Confidence 8778899999999999999999987666543
No 352
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.35 E-value=2.2e-11 Score=152.71 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=104.3
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++++.+.|-. +...++++++|.++ +|+.++|+|+||||||||+|.+++..
T Consensus 455 ~i~~~~vsf~y~~---~~~~il~~i~l~i~----~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 455 AITFENIRFRYAP---DSPEVLSNLNLDIK----PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 5999999988831 23579999999998 89999999999999999999997643
Q ss_pred -HHhhccccccccccc--cchHHH---------------HHHHcCCccc-----------cc---cccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLADT---------------IFTRLGATDR-----------IM---TGESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d~---------------I~trig~~D~-----------i~---~~~Stf~~Em~ela~ 897 (1085)
+..++| |||++..- -++.|+ .....+..+. +. ..+|........+|+
T Consensus 528 ~~r~~i~-~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 528 WLRRQMG-VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHhCe-EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 233455 88876421 112221 1222222211 11 224444444445777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+| +.+|+++|||||++|.|+.....+...+ ..+. .++|+|++||..+.+.. +++
T Consensus 607 al--l~~~~ililDEpts~LD~~~~~~i~~~l-~~~~--~~~t~i~itH~~~~~~~-~d~ 660 (694)
T TIGR01846 607 AL--VGNPRILIFDEATSALDYESEALIMRNM-REIC--RGRTVIIIAHRLSTVRA-CDR 660 (694)
T ss_pred HH--HhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHh--CCCEEEEEeCChHHHHh-CCE
Confidence 77 8999999999999999977655444433 3332 37899999999988765 443
No 353
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.34 E-value=1.9e-11 Score=150.42 Aligned_cols=150 Identities=18% Similarity=0.126 Sum_probs=100.6
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+..-+. ++..|++|++|.++ +|+.++|+||+|||||||++.+++..
T Consensus 349 ~i~~~~vsf~~~----~~~~vL~~i~l~i~----~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSP----DGKTLAGPLNFTLP----AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEecc----CCCeeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHH
Confidence 589999975442 24679999999998 89999999999999999999997753
Q ss_pred HHhhcccccccccc--ccchHHHH---------------HHHcCCcc-----------cccc---ccchhhHHhHHHHHH
Q 040956 850 ILAQLGCFVPCEMC--VLSLADTI---------------FTRLGATD-----------RIMT---GESTFLVECTETASV 898 (1085)
Q Consensus 850 ilaqiG~~VPa~~a--~i~~~d~I---------------~trig~~D-----------~i~~---~~Stf~~Em~ela~i 898 (1085)
+..++| |||++.. .-++.|+| ....++.+ .+.. .+|........+|++
T Consensus 421 lr~~i~-~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 421 WRKHLS-WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred HHhheE-EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 122344 7887642 11222222 11112211 1111 233333334447777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
| ..+|+++|||||+++.|+.....+..+ +..+. .+.|+|++||.++.+..
T Consensus 500 l--l~~~~IliLDE~TSaLD~~te~~i~~~-l~~~~--~~~TvIiItHrl~~i~~ 549 (588)
T PRK11174 500 L--LQPCQLLLLDEPTASLDAHSEQLVMQA-LNAAS--RRQTTLMVTHQLEDLAQ 549 (588)
T ss_pred H--hcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHh--CCCEEEEEecChHHHHh
Confidence 7 899999999999999887776555443 33332 36899999999987765
No 354
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.34 E-value=1.9e-11 Score=148.44 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=98.3
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+.+.|- +++.|++|++|.++ +|+.++|+||+|||||||++.+++..
T Consensus 334 ~I~~~~vsf~Y~----~~~~vL~~isl~i~----~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYP----GSPPVLDGVSLDLP----PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecC----CCCceeecceEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHH
Confidence 599999999883 23469999999998 89999999999999999999996542
Q ss_pred HHhhccccccccccc--cchHHH---------------HHHHcCCccccc--------------cccchhhHHhHHHHHH
Q 040956 850 ILAQLGCFVPCEMCV--LSLADT---------------IFTRLGATDRIM--------------TGESTFLVECTETASV 898 (1085)
Q Consensus 850 ilaqiG~~VPa~~a~--i~~~d~---------------I~trig~~D~i~--------------~~~Stf~~Em~ela~i 898 (1085)
+..++| |||++..- -++.|+ .....++.+.+. ..+|........+|++
T Consensus 406 lr~~i~-~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARa 484 (529)
T TIGR02868 406 LRRRIS-VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARA 484 (529)
T ss_pred HHhheE-EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHH
Confidence 123566 88887531 122222 222333332221 1234333334457777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
+ ..+|+++|||||+++.|+.....+...+. .+ ..++|+|++||.+
T Consensus 485 l--l~~~~iliLDE~TSaLD~~te~~I~~~l~-~~--~~~~TvIiItHrl 529 (529)
T TIGR02868 485 L--LADAPILLLDEPTEHLDAGTESELLEDLL-AA--LSGKTVVVITHHL 529 (529)
T ss_pred H--hcCCCEEEEeCCcccCCHHHHHHHHHHHH-Hh--cCCCEEEEEecCC
Confidence 7 89999999999988888766554444333 22 1378999999973
No 355
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.34 E-value=1.1e-11 Score=122.97 Aligned_cols=134 Identities=21% Similarity=0.252 Sum_probs=85.3
Q ss_pred ceEEEEeecCCCCCCCCceEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCC
Q 040956 391 VHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGS 470 (1085)
Q Consensus 391 ~yllaI~E~~~~~~~~~~~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~ 470 (1085)
|||+||.+. .....||+||+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+......+.......
T Consensus 1 Nyl~aI~~~-----~~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~~~~~~~~~~~~~~~ 72 (137)
T PF05188_consen 1 NYLAAIYEK-----NDEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSSSDISALLSSLKNSF 72 (137)
T ss_dssp -EEEEEEEE-----TCSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSHHHHHHHHHCCTTTC
T ss_pred CEEEEEEEe-----cCCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcccccchhhhhhcccc
Confidence 699999985 1334699999999999999999998 89999999999999999998765433211122111111
Q ss_pred CceEeeecCcccccCchHHHHHHHHHcccCCCCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccc
Q 040956 471 AALELTPAMAVTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLR 541 (1085)
Q Consensus 471 ~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~~~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~ 541 (1085)
. .++... ...|+.......+. .+|..... ..+......+.+++|+|+||.||+..+....+.
T Consensus 73 ~--~~~~~~-~~~~~~~~~~~~i~---~~~~~~~~---~~~~~~~~~~~~~~Al~all~Yl~~t~~~~~l~ 134 (137)
T PF05188_consen 73 F--KVTETP-SWYFDSEFASEDIE---EQFGVADL---DGFGLEEDKELALSALGALLKYLEETQKSENLS 134 (137)
T ss_dssp C--EEEEET-CGGGSHHHHHHHHH---HHCTSSST---CCCTTGGGGHHHHHHHHHHHHHHHHTTTCCCCT
T ss_pred c--eeeecc-hhhhhhHHHHHHHH---Hhhccccc---cccCccCCCHHHHHHHHHHHHHHHHHCcccccc
Confidence 2 223333 44555444433332 34433220 001002456889999999999999987663443
No 356
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.34 E-value=2e-11 Score=148.39 Aligned_cols=151 Identities=22% Similarity=0.211 Sum_probs=102.6
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. +..++.+|++|.++ +|+.++|+||||+|||||+|.+++..
T Consensus 320 ~i~~~~v~f~y~~---~~~~il~~i~l~i~----~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPG---RRAPALRPVSFTVP----PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEECCC---CCcccccceeEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 5999999988821 12479999999998 89999999999999999999996533
Q ss_pred -HHhhcccccccccc--ccchHHH---------------HHHHcCCcccc-----------cc---ccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMC--VLSLADT---------------IFTRLGATDRI-----------MT---GESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a--~i~~~d~---------------I~trig~~D~i-----------~~---~~Stf~~Em~ela~ 897 (1085)
+..++| |||++.. ..++.++ .....+..+.+ .. .+|........+|+
T Consensus 393 ~lr~~i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 393 SWRDQIA-WVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HHHhheE-EEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 223556 7887642 1122222 22233332211 11 23333333444777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++ +.+|+++|||||+++.|+.....+...+. .+. .++|+|++||+++....
T Consensus 472 al--~~~~~ililDE~ts~lD~~~~~~i~~~l~-~~~--~~~t~i~itH~~~~~~~ 522 (529)
T TIGR02857 472 AF--LRDAPLLLLDEPTAHLDAETEALVTEALR-ALA--QGRTVLLVTHRLALAER 522 (529)
T ss_pred HH--hcCCCEEEEeCcccccCHHHHHHHHHHHH-Hhc--CCCEEEEEecCHHHHHh
Confidence 77 89999999999999999877655544333 332 37899999999988754
No 357
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.34 E-value=2.3e-11 Score=152.76 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=100.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+...|-. ..+.+|++|++|.++ +|+.++|+||||||||||++.+++..
T Consensus 477 ~~I~~~nVsf~Y~~--~~~~~vL~~isl~i~----~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 477 GLIEFQDVSFSYPN--RPDVPVLKGLTFTLH----PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH 550 (711)
T ss_pred CeEEEEEEEEECCC--CCCCccccCceEEEc----CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH
Confidence 36999999888731 113589999999998 89999999999999999999997643
Q ss_pred --HHhhcccccccccc--ccchHHH---------------HHHHcCCccc-----------cc---cccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADT---------------IFTRLGATDR-----------IM---TGESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~---------------I~trig~~D~-----------i~---~~~Stf~~Em~ela 896 (1085)
+-.++| |||++.. .-++.|+ .....++.+. +. ..+|........+|
T Consensus 551 ~~lr~~i~-~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 551 HYLHRQVA-LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HHHHhhce-EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHH
Confidence 223455 8887642 1122222 2222232221 11 12444444444577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+++ ..+++++|||||+++.|+.... .+.+ .....++|+|++||.++.+..
T Consensus 630 RAL--l~~p~ILILDEpTSaLD~~te~----~i~~-~~~~~~~TvIiItHrl~~i~~ 679 (711)
T TIGR00958 630 RAL--VRKPRVLILDEATSALDAECEQ----LLQE-SRSRASRTVLLIAHRLSTVER 679 (711)
T ss_pred HHH--hcCCCEEEEEccccccCHHHHH----HHHH-hhccCCCeEEEEeccHHHHHh
Confidence 777 8999999999998888764432 2333 222347899999999988765
No 358
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.4e-11 Score=140.44 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=108.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|++.|+...|. .+..|+++++|++. +|+.++|+|+|||||||+||++...-
T Consensus 351 ~I~F~dV~f~y~----~k~~iL~gvsf~I~----kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 351 SIEFDDVHFSYG----PKRKVLKGVSFTIP----KGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES 422 (591)
T ss_pred cEEEEeeEEEeC----CCCceecceeEEec----CCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHH
Confidence 599999988883 23459999999998 89999999999999999999994321
Q ss_pred HHhhcccccccccccc--chH---------------HHHHHHcCCcccccc---ccchhhH---------HhHH--HHHH
Q 040956 850 ILAQLGCFVPCEMCVL--SLA---------------DTIFTRLGATDRIMT---GESTFLV---------ECTE--TASV 898 (1085)
Q Consensus 850 ilaqiG~~VPa~~a~i--~~~---------------d~I~trig~~D~i~~---~~Stf~~---------Em~e--la~i 898 (1085)
+-.-|| +||++..-+ +++ -.+..+.|..|.+.. |-+|..+ |.++ ++++
T Consensus 423 lR~~Ig-~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 423 LRQSIG-VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred hhhhee-EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence 222355 999986322 111 123445565554432 3333222 3333 5555
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeec
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~ 963 (1085)
+ ..++.++++||+|+.+|......+...++.. ..+.|+|++-|++.++..++.-..+.++
T Consensus 502 ~--lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 502 F--LKDAPILLLDEATSALDSETEREILDMIMDV---MSGRTVIMIVHRLDLLKDFDKIIVLDNG 561 (591)
T ss_pred H--hcCCCeEEecCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecchhHhcCCEEEEEECC
Confidence 5 8999999999997777766655555544441 2478999999999999877654434343
No 359
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.33 E-value=3e-12 Score=148.55 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=110.4
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccc-
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS- 866 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~- 866 (1085)
.|++.+.|+...|- ++..+.++++|+++ .+..++|+||||+|||||||++.+- +...+|...|.....++
T Consensus 387 ~pvi~~~nv~F~y~----~~~~iy~~l~fgid----~~srvAlVGPNG~GKsTLlKl~~gd-l~p~~G~vs~~~H~~~~~ 457 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS----DNPMIYKKLNFGID----LDSRVALVGPNGAGKSTLLKLITGD-LQPTIGMVSRHSHNKLPR 457 (614)
T ss_pred CCeEEEeccccCCC----CcchhhhhhhcccC----cccceeEecCCCCchhhhHHHHhhc-cccccccccccccccchh
Confidence 47899999888772 33479999999987 6788999999999999999999763 44555554444333332
Q ss_pred ------------------------------hHHHHHHHcCCc-cccccccchhhHHhHH-HHHHHHhCCCCcEEEEeCCC
Q 040956 867 ------------------------------LADTIFTRLGAT-DRIMTGESTFLVECTE-TASVLQKATQDSLVILDELG 914 (1085)
Q Consensus 867 ------------------------------~~d~I~trig~~-D~i~~~~Stf~~Em~e-la~iL~~at~~sLvLLDEpg 914 (1085)
.+..|+.|.|.. |......++.+++++. +..+.-..+.|.|+||||||
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 233467777765 4445566666666553 33333337999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 915 rGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.|.|...-.+ +-++| +....++|++|||..++..++....
T Consensus 538 nhLDi~tid~----laeai-Ne~~Ggvv~vSHDfrlI~qVaeEi~ 577 (614)
T KOG0927|consen 538 NHLDIETIDA----LAEAI-NEFPGGVVLVSHDFRLISQVAEEIW 577 (614)
T ss_pred cCCCchhHHH----HHHHH-hccCCceeeeechhhHHHHHHHHhH
Confidence 8877554332 33333 3346679999999999998886543
No 360
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.30 E-value=1.1e-11 Score=134.49 Aligned_cols=143 Identities=16% Similarity=0.133 Sum_probs=85.7
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHh-hhhhH--HHH---------hhcc-ccccc-------------
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLR-ATCLA--VIL---------AQLG-CFVPC------------- 860 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR-~i~~i--~il---------aqiG-~~VPa------------- 860 (1085)
+..+.++++|.+. +|++++|+||||||||||++ .+... ..+ ...| .++|.
T Consensus 7 ~~~~l~~vsl~i~----~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 7 REHNLKNVDVDIP----RNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhhccccceeecC----CCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 4578899999998 89999999999999999972 22100 000 0010 11111
Q ss_pred -ccc-------ccch-------HH------------HHHHHcCCcc-ccccccchhhHH---hHHHHHHHHhCCCC--cE
Q 040956 861 -EMC-------VLSL-------AD------------TIFTRLGATD-RIMTGESTFLVE---CTETASVLQKATQD--SL 907 (1085)
Q Consensus 861 -~~a-------~i~~-------~d------------~I~trig~~D-~i~~~~Stf~~E---m~ela~iL~~at~~--sL 907 (1085)
+.. .+.. +. .++.+++..+ ......++++.+ ...++++| +.+| ++
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral--~~~p~~~l 160 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQI--GSGLTGVL 160 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHH--HhCCCCCE
Confidence 000 0000 00 1223334433 233333444444 44466666 6665 69
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+|||||++|+|+.....+. .++..+.++ |.++|++||+++++. ++++.
T Consensus 161 lllDEPt~gLD~~~~~~l~-~~l~~~~~~-g~tii~itH~~~~~~-~~d~i 208 (226)
T cd03270 161 YVLDEPSIGLHPRDNDRLI-ETLKRLRDL-GNTVLVVEHDEDTIR-AADHV 208 (226)
T ss_pred EEEeCCccCCCHHHHHHHH-HHHHHHHhC-CCEEEEEEeCHHHHH-hCCEE
Confidence 9999999999987765544 445556554 889999999999875 56543
No 361
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-11 Score=143.82 Aligned_cols=155 Identities=19% Similarity=0.157 Sum_probs=106.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc-------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC------------- 856 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~------------- 856 (1085)
.++++|++..|-. ....+++|++|++. +|+.++|+|++||||||++..+++. +..|-|.
T Consensus 336 ~l~~~~vsF~y~~---~~~~~L~~~~l~l~----~GEkvAIlG~SGsGKSTllqLl~~~-~~~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPG---QQTKALKNFNLTLA----QGEKVAILGRSGSGKSTLLQLLAGA-WDPQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecCC---Cccchhhccceeec----CCCeEEEECCCCCCHHHHHHHHHhc-cCCCCCeeeECCcChhhCCh
Confidence 7999999999842 23589999999998 8999999999999999999999763 2222221
Q ss_pred --------cccccc--cccchHH---------------HHHHHcCCcccccc---c-----------cchhhHHhHHHHH
Q 040956 857 --------FVPCEM--CVLSLAD---------------TIFTRLGATDRIMT---G-----------ESTFLVECTETAS 897 (1085)
Q Consensus 857 --------~VPa~~--a~i~~~d---------------~I~trig~~D~i~~---~-----------~Stf~~Em~ela~ 897 (1085)
++++.. +.-++-| .++..+|..+-+.. | .|........+|+
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 233221 0001111 24444454332221 2 2332233344888
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+| .++.+++||||||.|+|+.....+..-+.+++. +.|+||+||....++.+...
T Consensus 488 ~L--L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL~~le~~drI 542 (573)
T COG4987 488 AL--LHDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRLRGLERMDRI 542 (573)
T ss_pred HH--HcCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEecccccHhhcCEE
Confidence 88 789999999999999999887776666666542 67999999999888776543
No 362
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.29 E-value=1.3e-11 Score=157.80 Aligned_cols=168 Identities=14% Similarity=0.197 Sum_probs=121.3
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.+.+.++..-|- ..+.+.+++++.++ +|++.++.|||||||||+++++.+..
T Consensus 564 ~~~~~~L~k~y~----~~~~Av~~ls~~V~----~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 564 ALVLNNLSKVYG----GKDGAVRGLSFAVP----PGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDF 635 (885)
T ss_pred eEEEcceeeeec----chhhhhcceEEEec----CCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccch
Confidence 455555555551 11117889999998 89999999999999999999885432
Q ss_pred --HHhhccccccccccccc------------------------hHHHHHHHcCCccccccccchhhHHhHH-HHHHHHhC
Q 040956 850 --ILAQLGCFVPCEMCVLS------------------------LADTIFTRLGATDRIMTGESTFLVECTE-TASVLQKA 902 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~i~------------------------~~d~I~trig~~D~i~~~~Stf~~Em~e-la~iL~~a 902 (1085)
...++| |.|+..+-.. .++.+...+|..+......++.++++++ +..++...
T Consensus 636 ~~~~~~iG-yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 636 QQVRKQLG-YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred hhhhhhcc-cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh
Confidence 345688 8998753221 1233444555555555555666666554 44455448
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce-eeceeEEE
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV-TLQHMACA 968 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V-~~~~m~~~ 968 (1085)
.+|++|+||||+.|.||.. ....|.++..+.+. +..+|++||+++.++.+|++..+ .++++.|.
T Consensus 715 g~p~vi~LDEPstGmDP~a-rr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKA-RRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred cCCCEEEecCCCCCCCHHH-HHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 9999999999999999965 56789999998875 44899999999999999988664 45666665
No 363
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.28 E-value=1.6e-11 Score=151.84 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=102.5
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------Hhhccccccccccc
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------------LAQLGCFVPCEMCV 864 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------------laqiG~~VPa~~a~ 864 (1085)
+++.+++|+++.+. +|++++|+||||+||||||+++++..- -.++| |||++...
T Consensus 36 ~~~~iL~~vs~~i~----~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-yv~Q~~~~ 110 (617)
T TIGR00955 36 PRKHLLKNVSGVAK----PGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA-YVQQDDLF 110 (617)
T ss_pred CccccccCCEEEEe----CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhce-eecccccc
Confidence 45789999999998 899999999999999999999976421 11234 77775421
Q ss_pred c---ch------------------------HHHHHHHcCCcc---ccc------cccchhhHHhHHHHHHHHhCCCCcEE
Q 040956 865 L---SL------------------------ADTIFTRLGATD---RIM------TGESTFLVECTETASVLQKATQDSLV 908 (1085)
Q Consensus 865 i---~~------------------------~d~I~trig~~D---~i~------~~~Stf~~Em~ela~iL~~at~~sLv 908 (1085)
+ ++ ++.++..+|..+ ... .++|........+|+.| +++|+++
T Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL--~~~p~vl 188 (617)
T TIGR00955 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL--LTDPPLL 188 (617)
T ss_pred CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH--HcCCCEE
Confidence 1 11 344555666433 222 24566555555566666 9999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechh-HHHhhcCcccee
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHP-LTKEFASHPHVT 961 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~e-l~~~~~~~~~V~ 961 (1085)
+||||++|+|+.....+.. .+..+.++ |.|+|++||++. .+-.+.++..+.
T Consensus 189 llDEPtsgLD~~~~~~l~~-~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll 240 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQ-VLKGLAQK-GKTIICTIHQPSSELFELFDKIILM 240 (617)
T ss_pred EeeCCCcchhHHHHHHHHH-HHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEe
Confidence 9999999999888766554 45566654 899999999984 444455554333
No 364
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.28 E-value=8.1e-11 Score=136.16 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=103.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.+.++++..-= -...+++.++++|... +|+.++|+||+|||||||.|.+.++.
T Consensus 334 ~L~Ve~l~~~P---Pg~~~pil~~isF~l~----~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 334 ALSVERLTAAP---PGQKKPILKGISFALQ----AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406 (580)
T ss_pred eeeEeeeeecC---CCCCCcceecceeEec----CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHH
Confidence 58888876511 1235799999999998 89999999999999999999997654
Q ss_pred -HHhhcccccccccc--ccchHHH------------H------------HHHc--CCccccccccchhhHH---hHHHHH
Q 040956 850 -ILAQLGCFVPCEMC--VLSLADT------------I------------FTRL--GATDRIMTGESTFLVE---CTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a--~i~~~d~------------I------------~tri--g~~D~i~~~~Stf~~E---m~ela~ 897 (1085)
+=.++| |.|++-. .-++.++ | .-++ |..-.+-.+-++.+++ ...+|+
T Consensus 407 ~lG~hiG-YLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 407 QLGRHIG-YLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred HhccccC-cCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 124677 8998531 1112111 1 1111 2222333333444444 333666
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
+| -.+|-||+||||-+.+|..-..+++.+++ ++..+ |+++|++||-+.++...+
T Consensus 486 Al--YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~-~~k~r-G~~vvviaHRPs~L~~~D 539 (580)
T COG4618 486 AL--YGDPFLVVLDEPNSNLDSEGEAALAAAIL-AAKAR-GGTVVVIAHRPSALASVD 539 (580)
T ss_pred HH--cCCCcEEEecCCCCCcchhHHHHHHHHHH-HHHHc-CCEEEEEecCHHHHhhcc
Confidence 66 89999999999999998554455555554 45554 999999999999876544
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.28 E-value=2.3e-11 Score=161.64 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=109.5
Q ss_pred EEEEEcceeeeeecC--------CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------
Q 040956 790 VLKIKGLWHPFALGE--------NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~--------~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------- 850 (1085)
.+.++|+.+-+-... .+...+++|+++.+. +|++++|+|||||||||||+++++..-
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~----~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~in 942 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFR----PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 942 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEE----CCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEEC
Confidence 588888887663111 123479999999998 899999999999999999999976421
Q ss_pred ---------Hhhccccccccccc---cch------------------------HHHHHHHcCCcc---ccc-----cccc
Q 040956 851 ---------LAQLGCFVPCEMCV---LSL------------------------ADTIFTRLGATD---RIM-----TGES 886 (1085)
Q Consensus 851 ---------laqiG~~VPa~~a~---i~~------------------------~d~I~trig~~D---~i~-----~~~S 886 (1085)
...+| ||++.... +++ ++.++..+|..+ ... .++|
T Consensus 943 G~~~~~~~~~~~ig-yv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 943 GFPKKQETFARISG-YCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CccCChHHhhhheE-EEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 01233 67665311 111 234555555432 121 3455
Q ss_pred hhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH-HHhhcCcccee
Q 040956 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL-TKEFASHPHVT 961 (1085)
Q Consensus 887 tf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el-~~~~~~~~~V~ 961 (1085)
..+.....++..| +++|+|+|||||++|+|+..... ...++..+.++ |.|+|++||+++. +..++++..+.
T Consensus 1022 gGerkRvsIa~aL--~~~P~lL~LDEPTsgLD~~~a~~-v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1022 TEQRKRLTIAVEL--VANPSIIFMDEPTSGLDARAAAI-VMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred HHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 5444444566666 89999999999999999877554 44566667665 8999999999974 44555554443
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.27 E-value=1.9e-11 Score=162.49 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=108.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
..++++|+...+-. ..+.+.+++|+++.+. +|++++|+|||||||||||+++++..-
T Consensus 758 ~~l~~~nl~~~~~~-~~~~~~iL~~vs~~i~----~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKI-KKEKRVILNNVDGWVK----PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred ceEEEEeeEEEecC-CCCCcEeeeCCEEEEE----CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 46788988877621 1124679999999998 799999999999999999999977531
Q ss_pred --Hhhcccccccccc---ccch------------------------HHHHHHHcCCcccc---cc----ccchhhHHhHH
Q 040956 851 --LAQLGCFVPCEMC---VLSL------------------------ADTIFTRLGATDRI---MT----GESTFLVECTE 894 (1085)
Q Consensus 851 --laqiG~~VPa~~a---~i~~------------------------~d~I~trig~~D~i---~~----~~Stf~~Em~e 894 (1085)
..++| |||++.. .+++ ++.++..+|..+.. .. ++|..+.....
T Consensus 833 ~~~~~i~-yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 833 SFQRSIG-YVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred hhhccee-eecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHH
Confidence 01233 7776531 1111 23455555543322 11 45554444445
Q ss_pred HHHHHHhCCCCc-EEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH-HhhcCcccee
Q 040956 895 TASVLQKATQDS-LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT-KEFASHPHVT 961 (1085)
Q Consensus 895 la~iL~~at~~s-LvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~-~~~~~~~~V~ 961 (1085)
++..| +.+|+ ++|||||++|+|...... ...++..+.++ |+|+|++||+++.. ....++..+.
T Consensus 912 Ia~aL--~~~P~~iLlLDEPTsgLD~~~~~~-i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L 976 (1394)
T TIGR00956 912 IGVEL--VAKPKLLLFLDEPTSGLDSQTAWS-ICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLL 976 (1394)
T ss_pred HHHHH--HcCCCeEEEEcCCCCCCCHHHHHH-HHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEE
Confidence 66666 88995 999999999999877554 44566666654 89999999998753 2344544333
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.26 E-value=2.9e-11 Score=161.10 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=106.5
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. .....|++|++|.++ +|++++|+||||||||||+++++++.
T Consensus 382 ~I~~~nVsf~Y~~--~~~~~vL~~isl~i~----~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDT--RKDVEIYKDLNFTLT----EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCC--CCCCceeccceEEEc----CCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH
Confidence 5899999988821 112479999999998 89999999999999999999996643
Q ss_pred --HHhhccccccccccc--cchHHHHHH----------------------------------------------------
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTIFT---------------------------------------------------- 873 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I~t---------------------------------------------------- 873 (1085)
+..++| |||++..- .++.+.|.-
T Consensus 456 ~~lr~~Ig-~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 456 KWWRSKIG-VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHHHhcc-EecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 123456 78776421 233333321
Q ss_pred --------------------HcCCcccc-----------c---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 040956 874 --------------------RLGATDRI-----------M---TGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919 (1085)
Q Consensus 874 --------------------rig~~D~i-----------~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~ 919 (1085)
.+++.+.+ . ..+|..+.....+|++| +.+|+++|||||+++.|+
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAl--l~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAI--IRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHH--hcCCCEEEEeCcccccCH
Confidence 11221111 1 12333333344477777 899999999999999997
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 920 ~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
..... ....++.+.+..+.|+|++||+++.+. .+++..+
T Consensus 613 ~se~~-i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iiv 651 (1466)
T PTZ00265 613 KSEYL-VQKTINNLKGNENRITIIIAHRLSTIR-YANTIFV 651 (1466)
T ss_pred HHHHH-HHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEE
Confidence 66444 444555554423789999999998875 4555433
No 368
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.24 E-value=4.1e-11 Score=128.84 Aligned_cols=155 Identities=17% Similarity=0.081 Sum_probs=91.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------Hh-----
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------LA----- 852 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------la----- 852 (1085)
.|+++|.+ .|. -.+++.|... .+|++++|+||||+||||+|+.|....+ ..
T Consensus 5 ~i~l~nf~-~y~--------~~~~i~~~~~---~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFR--------EEQVIDFTGL---DNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcC--------CceEEeCCCC---CccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCC
Confidence 47888877 552 1256666532 1367999999999999999999963210 00
Q ss_pred ----hcccccccccc---------ccch--HHH-HHHHcC-Cccccc---cccchhhHHhHHHHHHHHhC--------CC
Q 040956 853 ----QLGCFVPCEMC---------VLSL--ADT-IFTRLG-ATDRIM---TGESTFLVECTETASVLQKA--------TQ 904 (1085)
Q Consensus 853 ----qiG~~VPa~~a---------~i~~--~d~-I~trig-~~D~i~---~~~Stf~~Em~ela~iL~~a--------t~ 904 (1085)
.++ ++..... .+.. +.+ ++...+ ..+.+. ...|..+.....+++++... .+
T Consensus 73 ~~~~~v~-~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~ 151 (213)
T cd03279 73 EDTAEVS-FTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGAR 151 (213)
T ss_pred CccEEEE-EEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence 011 1111000 0010 111 111112 222222 33444444455566666321 25
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++++|||||++|+|+.....+ ..++..+.++ +.++|++||+++++..++++..
T Consensus 152 ~~~lllDEp~~~lD~~~~~~~-~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~ 204 (213)
T cd03279 152 LEALFIDEGFGTLDPEALEAV-ATALELIRTE-NRMVGVISHVEELKERIPQRLE 204 (213)
T ss_pred CCEEEEeCCcccCCHHHHHHH-HHHHHHHHhC-CCEEEEEECchHHHHhhCcEEE
Confidence 789999999999998776554 4456666654 7899999999999988876543
No 369
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.21 E-value=1.3e-10 Score=116.68 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=107.5
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL------------------- 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il------------------- 851 (1085)
|.++|+..-| |...++-||+|+.. .|+.++|.||+|+|||||||.+-++...
T Consensus 3 irv~~in~~y-----g~~q~lfdi~l~~~----~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 3 IQLNGINCFY-----GAHQALFDITLDCP----EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred eEEccccccc-----ccchheeeeeecCC----CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCcc
Confidence 6677777666 66789999999987 7899999999999999999998654321
Q ss_pred --------hhcccccccccc---ccch----------------------HHHHHHHcCC---ccccccccchhhHHhHHH
Q 040956 852 --------AQLGCFVPCEMC---VLSL----------------------ADTIFTRLGA---TDRIMTGESTFLVECTET 895 (1085)
Q Consensus 852 --------aqiG~~VPa~~a---~i~~----------------------~d~I~trig~---~D~i~~~~Stf~~Em~el 895 (1085)
...| .|.+.+- .+++ .-.++.|+.. .|+..-.+|........+
T Consensus 74 ~k~i~~lr~~vg-mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 74 DKAIRDLRRNVG-MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHHHHHHHHhhh-hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 1223 2222110 0111 1124555543 333344455555555668
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|++| +.+|.++++|||+..+||.-... ...++..|.. .|.|-+++||..+.+...+.+.
T Consensus 153 aral--mmkpqvllfdeptaaldpeitaq-vv~iikel~~-tgitqvivthev~va~k~as~v 211 (242)
T COG4161 153 ARAL--MMEPQVLLFDEPTAALDPEITAQ-IVSIIKELAE-TGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred HHHH--hcCCcEEeecCcccccCHHHHHH-HHHHHHHHHh-cCceEEEEEeehhHHHhhhhhe
Confidence 8888 89999999999999988776444 4457777776 4999999999999999888653
No 370
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.19 E-value=6.1e-11 Score=157.83 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=101.5
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------H-----hhcccccccccc
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------L-----AQLGCFVPCEMC 863 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------l-----aqiG~~VPa~~a 863 (1085)
+.|++|+++.+. +|++++|+||||||||||||++++..- + .++| ||+++..
T Consensus 74 ~~iL~~vs~~i~----~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~-yv~Q~d~ 148 (1394)
T TIGR00956 74 FDILKPMDGLIK----PGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVV-YNAETDV 148 (1394)
T ss_pred ceeeeCCEEEEE----CCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeE-Eeccccc
Confidence 468899999987 799999999999999999999987520 0 1133 6666421
Q ss_pred c---cch-----------------------------HHHHHHHcCCccc--------cccccchhhHHhHHHHHHHHhCC
Q 040956 864 V---LSL-----------------------------ADTIFTRLGATDR--------IMTGESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 864 ~---i~~-----------------------------~d~I~trig~~D~--------i~~~~Stf~~Em~ela~iL~~at 903 (1085)
. +++ .+.++..+|..+. ...++|..+.....+|.+| ++
T Consensus 149 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL--~~ 226 (1394)
T TIGR00956 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS--LG 226 (1394)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH--Hh
Confidence 1 011 1334555665432 2345677666666677777 89
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech-hHHHhhcCccce
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH-PLTKEFASHPHV 960 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~-el~~~~~~~~~V 960 (1085)
+|++++||||++|+|+.....+. .++..+.++.|.++|+++|+. +.+..+.++..+
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~ 283 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFDKVIV 283 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Confidence 99999999999999988876655 466667665588999999996 556555555433
No 371
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.19 E-value=1e-10 Score=122.74 Aligned_cols=146 Identities=18% Similarity=0.160 Sum_probs=97.0
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh--------------------ccccccccc----
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ--------------------LGCFVPCEM---- 862 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq--------------------iG~~VPa~~---- 862 (1085)
.+.++++++|++. .|+++.|+|.||+|||||++.|++-..+.. .-.-|.++.
T Consensus 18 ek~~l~~~sL~I~----~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 18 EKRALNGLSLEIA----EGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred HHHHHhcCceeec----CCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 5789999999998 789999999999999999999987542211 000111110
Q ss_pred -cccchHHHH---------------------------HHH--cCCccccccccchhhHHh-HHHHHHHHhCCCCcEEEEe
Q 040956 863 -CVLSLADTI---------------------------FTR--LGATDRIMTGESTFLVEC-TETASVLQKATQDSLVILD 911 (1085)
Q Consensus 863 -a~i~~~d~I---------------------------~tr--ig~~D~i~~~~Stf~~Em-~ela~iL~~at~~sLvLLD 911 (1085)
..+++..++ .++ .|....+......|+++. +.++-++..+++|.+++||
T Consensus 94 ~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLD 173 (263)
T COG1101 94 APELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLD 173 (263)
T ss_pred cccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEec
Confidence 112222221 111 123333333344444433 3366666667999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|-+..+||.-+..+. ..-+.++++.+.|++++||.++-+-.+.++
T Consensus 174 EHTAALDPkta~~vm-~lT~kiV~~~klTtlMVTHnm~~Al~yG~R 218 (263)
T COG1101 174 EHTAALDPKTAEFVM-ELTAKIVEEHKLTTLMVTHNMEDALDYGNR 218 (263)
T ss_pred chhhcCCcchHHHHH-HHHHHHHHhcCCceEEEeccHHHHHhhCCe
Confidence 999999998765544 445556666789999999999998877765
No 372
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.18 E-value=3e-10 Score=152.78 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=105.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhcccccccc
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVPCE 861 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VPa~ 861 (1085)
.++++|+.+.|-. ....+++|++|.++ +|++++|+|||||||||||+++++..- -.++| |||++
T Consensus 636 ~i~~~~~~~~~~~---~~~~~l~~isl~i~----~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~-yv~Q~ 707 (1522)
T TIGR00957 636 SITVHNATFTWAR---DLPPTLNGITFSIP----EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVA-YVPQQ 707 (1522)
T ss_pred cEEEEEeEEEcCC---CCCceeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEE-EEcCC
Confidence 6999999988721 13579999999998 899999999999999999999977531 12455 78876
Q ss_pred ccc--cchHHHHH--------------HHcCC---------cc--ccc---cccchhhHHhHHHHHHHHhCCCCcEEEEe
Q 040956 862 MCV--LSLADTIF--------------TRLGA---------TD--RIM---TGESTFLVECTETASVLQKATQDSLVILD 911 (1085)
Q Consensus 862 ~a~--i~~~d~I~--------------trig~---------~D--~i~---~~~Stf~~Em~ela~iL~~at~~sLvLLD 911 (1085)
..- .++.|.|. ...+. .| .+. ..+|..+.....+|+++ ..+++++|||
T Consensus 708 ~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl--~~~~~illLD 785 (1522)
T TIGR00957 708 AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV--YSNADIYLFD 785 (1522)
T ss_pred ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEc
Confidence 421 12222221 11111 11 111 23444444455577777 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
||+++.|+..+..+...++.......++|+|++||+.+++.. +++
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ 830 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDV 830 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCE
Confidence 999999987766655555431101126899999999998875 454
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.17 E-value=5.8e-11 Score=159.46 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=96.2
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhcccccccccc--ccchHHHHH----
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVPCEMC--VLSLADTIF---- 872 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VPa~~a--~i~~~d~I~---- 872 (1085)
++.+++|++|.+. +|++++|+|||||||||||++|++..- -.++| |+|++.. ..++.|.|.
T Consensus 672 ~~~iL~~isl~i~----~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~-yv~Q~~~l~~~Tv~enI~~~~~ 746 (1560)
T PTZ00243 672 PKVLLRDVSVSVP----RGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIA-YVPQQAWIMNATVRGNILFFDE 746 (1560)
T ss_pred CceeEeeeEEEEC----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEE-EEeCCCccCCCcHHHHHHcCCh
Confidence 4568999999998 899999999999999999999987531 12455 7887632 112222221
Q ss_pred -------------------HHc--CCcccccc---ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 040956 873 -------------------TRL--GATDRIMT---GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928 (1085)
Q Consensus 873 -------------------tri--g~~D~i~~---~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~a 928 (1085)
..+ |....+.. .+|..+.....+|++| +.+++++|||||+++.|+..+..+...
T Consensus 747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl--~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 747 EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAV--YANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 111 22212222 2444444445577777 899999999999999998776666655
Q ss_pred HHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 929 VFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 929 vle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++.... .+.|+|++||+.+++.. +++.
T Consensus 825 ~~~~~~--~~~TvIlvTH~~~~~~~-ad~i 851 (1560)
T PTZ00243 825 CFLGAL--AGKTRVLATHQVHVVPR-ADYV 851 (1560)
T ss_pred HHHHhh--CCCEEEEEeCCHHHHHh-CCEE
Confidence 543332 37899999999999864 5443
No 374
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.17 E-value=6.2e-11 Score=128.32 Aligned_cols=141 Identities=20% Similarity=0.166 Sum_probs=100.9
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------Hhhccccccccccc--------------
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------------LAQLGCFVPCEMCV-------------- 864 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------------laqiG~~VPa~~a~-------------- 864 (1085)
|++|... ...+++|.|++|+|||||+++|+++.- -+.-|.|+|.+..+
T Consensus 16 ~a~~~~p----~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 16 DANFTLP----ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEeccCC----CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 4556554 225999999999999999999988651 12334444443322
Q ss_pred --------------cchHHHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 040956 865 --------------LSLADTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927 (1085)
Q Consensus 865 --------------i~~~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~ 927 (1085)
...||+|..-+|...-+..-.++.+++ ...++++| .+.|.|+|||||.+.+|.--..+ ..
T Consensus 92 tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRAL--Lt~P~LLLmDEPLaSLD~~RK~E-il 168 (352)
T COG4148 92 TVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRAL--LTAPELLLMDEPLASLDLPRKRE-IL 168 (352)
T ss_pred EEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHH--hcCCCeeeecCchhhcccchhhH-HH
Confidence 224677777788766555555555543 34477777 99999999999977777544433 44
Q ss_pred HHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 928 AVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 928 avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
-.+|.|.++.+..++++||-.+.+..++++.-+
T Consensus 169 pylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~ 201 (352)
T COG4148 169 PYLERLRDEINIPILYVSHSLDEVLRLADRVVV 201 (352)
T ss_pred HHHHHHHHhcCCCEEEEecCHHHHHhhhheEEE
Confidence 578889998899999999999999999987544
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=99.17 E-value=5.7e-11 Score=157.86 Aligned_cols=145 Identities=20% Similarity=0.223 Sum_probs=100.8
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH---------------------hhccccccccccc--
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------------------AQLGCFVPCEMCV-- 864 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------------------aqiG~~VPa~~a~-- 864 (1085)
..|++|+++.+. +|++++|+||||||||||||++++..-- ..+| ||+++...
T Consensus 178 ~~IL~~vs~~i~----~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~ 252 (1470)
T PLN03140 178 LTILKDASGIIK----PSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSA-YISQNDVHVG 252 (1470)
T ss_pred ceeccCCeEEEe----CCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeE-EecccccCCC
Confidence 568999999988 8999999999999999999999775310 1123 66654211
Q ss_pred -cch-------------------------------------------------------HHHHHHHcCCcc--------c
Q 040956 865 -LSL-------------------------------------------------------ADTIFTRLGATD--------R 880 (1085)
Q Consensus 865 -i~~-------------------------------------------------------~d~I~trig~~D--------~ 880 (1085)
+++ +|.++..+|..+ .
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 111 233555566542 2
Q ss_pred cccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech-hHHHhhcCccc
Q 040956 881 IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH-PLTKEFASHPH 959 (1085)
Q Consensus 881 i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~-el~~~~~~~~~ 959 (1085)
...++|..+.....++.+| +.+|++++||||++|+|+.....+.. ++..+.+..|.|+|+++|++ +.+..+.++..
T Consensus 333 ~~rglSGGerkRVsia~aL--~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vi 409 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMI--VGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFDDII 409 (1470)
T ss_pred cccCCCcccceeeeehhhh--cCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhheEE
Confidence 3346666555555677777 89999999999999999888776654 55566654588999999986 45555555443
Q ss_pred e
Q 040956 960 V 960 (1085)
Q Consensus 960 V 960 (1085)
+
T Consensus 410 l 410 (1470)
T PLN03140 410 L 410 (1470)
T ss_pred E
Confidence 3
No 376
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.16 E-value=1.5e-10 Score=134.73 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=93.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--Hhhccccc---------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--LAQLGCFV--------- 858 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--laqiG~~V--------- 858 (1085)
-+.+.+++..+ .+..+..|+.|... +|+.++|+|||||||||+|+.|++-.+ -.+++.|.
T Consensus 75 dvk~~sls~s~-----~g~~l~kd~~~El~----~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 75 DVKIESLSLSF-----HGVELIKDVTLELN----RGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred cceeeeeeecc-----CCceeeeeeeEEec----CCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 47777777665 35688999999987 799999999999999999999976331 11222221
Q ss_pred ---------cccc--c----------------ccchHHHHHHHcCC-----------------------ccccccccchh
Q 040956 859 ---------PCEM--C----------------VLSLADTIFTRLGA-----------------------TDRIMTGESTF 888 (1085)
Q Consensus 859 ---------Pa~~--a----------------~i~~~d~I~trig~-----------------------~D~i~~~~Stf 888 (1085)
++.. . ...-++.++.|+.. .+....+.|..
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgG 225 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGG 225 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCch
Confidence 1100 0 00011223333221 11111122222
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCc-eEEEEEechhHHHhhcCc
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC-RLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~-tiL~aTH~~el~~~~~~~ 957 (1085)
-.-...+|++| ..+|+|+|||||+.|+| -.+++| |+..+.+... ++++++|+.+.+..+|++
T Consensus 226 wrmR~aLAr~L--f~kP~LLLLDEPtnhLD---leA~~w--Lee~L~k~d~~~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 226 WRMRAALARAL--FQKPDLLLLDEPTNHLD---LEAIVW--LEEYLAKYDRIILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred HHHHHHHHHHH--hcCCCEEEecCCccCCC---HHHHHH--HHHHHHhccCceEEEEecchhhhhhHhhh
Confidence 22222377777 89999999999955555 445555 4444444455 799999999999988875
No 377
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.2e-10 Score=118.01 Aligned_cols=161 Identities=22% Similarity=0.306 Sum_probs=108.6
Q ss_pred EEEEEcceeeeeecCCCC--cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------
Q 040956 790 VLKIKGLWHPFALGENGG--LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------ 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~--~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------ 849 (1085)
.|.++|+++.|.....++ -+|.++++|+++ .|++++|-||+|+|||||||++-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~----aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVN----AGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEec----CccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhh
Confidence 478888888887654333 479999999998 79999999999999999999983321
Q ss_pred -----------------HHhhccccccccccc-----------------cchHHHHHHHcCCcccccc-ccchhhHHhHH
Q 040956 850 -----------------ILAQLGCFVPCEMCV-----------------LSLADTIFTRLGATDRIMT-GESTFLVECTE 894 (1085)
Q Consensus 850 -----------------ilaqiG~~VPa~~a~-----------------i~~~d~I~trig~~D~i~~-~~Stf~~Em~e 894 (1085)
+.+|.--.+|--++- ......+++|++..+.+.. ..+||+++-++
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQ 159 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQ 159 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhe
Confidence 111111111211100 0012237889998888765 57899877555
Q ss_pred ---HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 895 ---TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 895 ---la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+++-+ +.+..++|||||+..+|...... ...++..-. ..|+.+|=+=||.+.-+..+++.
T Consensus 160 RVNIaRgf--ivd~pILLLDEPTasLDa~Nr~v-Vveli~e~K-a~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 160 RVNIARGF--IVDYPILLLDEPTASLDATNRAV-VVELIREAK-ARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred ehhhhhhh--hccCceEEecCCcccccccchHH-HHHHHHHHH-hcCceEEEeeccHHHHHHHhhhe
Confidence 55555 78999999999976666554332 223333322 24888999999999888777753
No 378
>PLN03232 ABC transporter C family member; Provisional
Probab=99.16 E-value=4.5e-10 Score=150.93 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=102.1
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. +...|++|++|.++ +|+.++|+|++|||||||++.+..+.
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~----~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVS----PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHH
Confidence 5999999998821 23579999999998 89999999999999999999995532
Q ss_pred -HHhhcccccccccccc--chHH--------------HHHHHcCCccc-----------cccc---cchhhHHhHHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLAD--------------TIFTRLGATDR-----------IMTG---ESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d--------------~I~trig~~D~-----------i~~~---~Stf~~Em~ela~i 898 (1085)
+..+++ +||++..-+ ++.+ ....+.++.+. +..+ +|........+|++
T Consensus 1307 ~lR~~i~-iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARA 1385 (1495)
T PLN03232 1307 DLRRVLS-IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385 (1495)
T ss_pred HHHhhcE-EECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 234556 888875211 1111 12233333222 2222 33333334457777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
| ..+++++||||++++.|+..... ....++... .++|+|++||.++.+..+
T Consensus 1386 L--Lr~~~ILILDEATSaLD~~Te~~-Iq~~L~~~~--~~~TvI~IAHRl~ti~~~ 1436 (1495)
T PLN03232 1386 L--LRRSKILVLDEATASVDVRTDSL-IQRTIREEF--KSCTMLVIAHRLNTIIDC 1436 (1495)
T ss_pred H--HhCCCEEEEECCcccCCHHHHHH-HHHHHHHHc--CCCEEEEEeCCHHHHHhC
Confidence 7 89999999999988888655333 333333322 379999999999887653
No 379
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.15 E-value=2.4e-10 Score=140.11 Aligned_cols=157 Identities=21% Similarity=0.254 Sum_probs=107.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|- +++.+.+|++|..+ +|+.++|+||+||||||+++.+....
T Consensus 328 ~I~f~~vsf~y~----~~~~vl~~is~~i~----~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 328 SIEFENVSFSYP----GKKPVLKDISFSIE----PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399 (567)
T ss_pred eEEEEEEEEEcC----CCCccccCceEEEc----CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHH
Confidence 499999999882 25799999999998 89999999999999999999995422
Q ss_pred -HHhhcccccccccccc--chHHHH---------------H---------HHc--CCcccccc---ccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLADTI---------------F---------TRL--GATDRIMT---GESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d~I---------------~---------tri--g~~D~i~~---~~Stf~~Em~ela~ 897 (1085)
+..++| +||++..-+ ++.++| . .++ |....+.. .+|........+|+
T Consensus 400 ~lr~~I~-~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 400 SLRKRIG-IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHHHhcc-EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 456788 899865221 222221 1 111 11111221 23444444455777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
++ ..++.++||||+++..|+.....+..++. .+. + +.|+|+++|.+..+.. +++.-|.
T Consensus 479 al--l~~~~ILILDEaTSalD~~tE~~I~~~l~-~l~-~-~rT~iiIaHRlsti~~-aD~IiVl 536 (567)
T COG1132 479 AL--LRNPPILILDEATSALDTETEALIQDALK-KLL-K-GRTTLIIAHRLSTIKN-ADRIIVL 536 (567)
T ss_pred HH--hcCCCEEEEeccccccCHHhHHHHHHHHH-HHh-c-CCEEEEEeccHhHHHh-CCEEEEE
Confidence 77 89999999999988888776555554443 333 2 5689999999988776 5544333
No 380
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.15 E-value=7.9e-11 Score=157.89 Aligned_cols=142 Identities=18% Similarity=0.122 Sum_probs=97.2
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhccccccccccc--cchHHHHH-----
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVPCEMCV--LSLADTIF----- 872 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VPa~~a~--i~~~d~I~----- 872 (1085)
.++++|++|.+. +|++++|+|||||||||||+++++..- -.++| |||++..- .++.|.|.
T Consensus 439 ~~~l~~i~l~i~----~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~ia-yv~Q~~~l~~~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 439 TPVLKNISFKLE----KGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRIS-FSPQTSWIMPGTIKDNIIFGLSY 513 (1490)
T ss_pred CcceeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEE-EEeCCCccCCccHHHHHHhcccc
Confidence 468999999998 799999999999999999999977542 12344 77775321 13333332
Q ss_pred ---------HHcCCccc-----------cc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHH
Q 040956 873 ---------TRLGATDR-----------IM---TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAV 929 (1085)
Q Consensus 873 ---------trig~~D~-----------i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~av 929 (1085)
...+..+. +. ..+|..+.....+|+++ ..+++++|||||++|.|+..+..+...+
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl--~~~~~illLDep~saLD~~~~~~i~~~~ 591 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV--YKDADLYLLDSPFTHLDVVTEKEIFESC 591 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH--HcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11111111 11 12344444444577777 8999999999999999988887776655
Q ss_pred HHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 930 FRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 930 le~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+..+.+ ++|+|++||+++.+.. +++..
T Consensus 592 l~~~~~--~~tvilvtH~~~~~~~-ad~ii 618 (1490)
T TIGR01271 592 LCKLMS--NKTRILVTSKLEHLKK-ADKIL 618 (1490)
T ss_pred HHHHhc--CCeEEEEeCChHHHHh-CCEEE
Confidence 555442 7899999999998865 55443
No 381
>PLN03130 ABC transporter C family member; Provisional
Probab=99.15 E-value=4.8e-10 Score=150.99 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=104.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. +...|++|++|+++ +|+.++|+|++|||||||++.+..+.
T Consensus 1237 ~I~f~nVsf~Y~~---~~~~VL~~is~~I~----~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1237 SIKFEDVVLRYRP---ELPPVLHGLSFEIS----PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLM 1309 (1622)
T ss_pred cEEEEEEEEEeCC---CCCceecceeEEEc----CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHH
Confidence 5999999988821 22479999999998 89999999999999999999996532
Q ss_pred -HHhhcccccccccccc--chHHH--------------HHHHcCCccc-----------cccc---cchhhHHhHHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLADT--------------IFTRLGATDR-----------IMTG---ESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d~--------------I~trig~~D~-----------i~~~---~Stf~~Em~ela~i 898 (1085)
+..++| +||++..-+ ++.++ ...+.++.+. +..+ +|.....+.-+|++
T Consensus 1310 ~LR~~Is-iVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARA 1388 (1622)
T PLN03130 1310 DLRKVLG-IIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARA 1388 (1622)
T ss_pred HHHhccE-EECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHH
Confidence 334566 888875211 11111 1222232222 2222 33333344457777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
| ..++.++||||++++.|...... ....++.+. .+||+|+++|.++.+..+ ++.-|
T Consensus 1389 L--Lr~p~ILILDEATSaLD~~Te~~-Iq~~I~~~~--~~~TvI~IAHRL~tI~~~-DrIlV 1444 (1622)
T PLN03130 1389 L--LRRSKILVLDEATAAVDVRTDAL-IQKTIREEF--KSCTMLIIAHRLNTIIDC-DRILV 1444 (1622)
T ss_pred H--HcCCCEEEEECCCCCCCHHHHHH-HHHHHHHHC--CCCEEEEEeCChHHHHhC-CEEEE
Confidence 7 89999999999988888655333 333333332 379999999999987764 44333
No 382
>PLN03232 ABC transporter C family member; Provisional
Probab=99.14 E-value=6.6e-10 Score=149.36 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=105.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------Hhhcccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------LAQLGCFVP 859 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------laqiG~~VP 859 (1085)
..++++|+...|-. ..+.++++|++|.++ +|+.++|+||+|||||||++.+.+..- -.+++ |||
T Consensus 613 ~~I~~~~vsF~y~~--~~~~~vL~~inl~i~----~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Ia-yv~ 685 (1495)
T PLN03232 613 PAISIKNGYFSWDS--KTSKPTLSDINLEIP----VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVA-YVP 685 (1495)
T ss_pred CcEEEEeeEEEcCC--CCCCceeeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEE-EEc
Confidence 35899999887731 113579999999998 899999999999999999999976431 22344 888
Q ss_pred ccccc--cchHHHH--------------HHHcCCcccc-----------cc---ccchhhHHhHHHHHHHHhCCCCcEEE
Q 040956 860 CEMCV--LSLADTI--------------FTRLGATDRI-----------MT---GESTFLVECTETASVLQKATQDSLVI 909 (1085)
Q Consensus 860 a~~a~--i~~~d~I--------------~trig~~D~i-----------~~---~~Stf~~Em~ela~iL~~at~~sLvL 909 (1085)
++..- -++-|+| ...-+..+++ .. .+|........+|+++ ..+++++|
T Consensus 686 Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl--y~~~~IlL 763 (1495)
T PLN03232 686 QVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV--YSNSDIYI 763 (1495)
T ss_pred CccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH--hcCCCEEE
Confidence 86421 1222222 2212221111 11 2344444444577777 89999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 910 LDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
||||+++.|+..+..+...++..+. .++|+|++||..+.+...
T Consensus 764 LDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~~a 806 (1495)
T PLN03232 764 FDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLPLM 806 (1495)
T ss_pred EcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHHhC
Confidence 9999999998877666666655443 378999999999876653
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.13 E-value=3e-10 Score=121.58 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+++++ +.+++++|+|||++|+|+....+....++..+.+..+.++|++||++++...
T Consensus 132 la~al--~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETF--GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHh--ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 34444 7899999999999999977655134445555554336789999999988753
No 384
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.12 E-value=5.6e-10 Score=123.63 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=54.0
Q ss_pred HHcCCcc-ccccccchhhHHhH---HHHHHHHhCC---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEE
Q 040956 873 TRLGATD-RIMTGESTFLVECT---ETASVLQKAT---QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945 (1085)
Q Consensus 873 trig~~D-~i~~~~Stf~~Em~---ela~iL~~at---~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aT 945 (1085)
.++|... .+....++++.++. .+++.| +. +++++|||||++|+++.+...+ ..++..+.+. |.++|++|
T Consensus 154 ~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL--~~~~~~p~lllLDEPtsgLD~~~~~~l-~~~L~~l~~~-g~tvIiit 229 (261)
T cd03271 154 CDVGLGYIKLGQPATTLSGGEAQRIKLAKEL--SKRSTGKTLYILDEPTTGLHFHDVKKL-LEVLQRLVDK-GNTVVVIE 229 (261)
T ss_pred HHcCCchhhhcCccccCCHHHHHHHHHHHHH--hcCCCCCcEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEe
Confidence 3455544 34444455555443 355555 44 3799999999999998886554 4466667654 88999999
Q ss_pred echhHHHhhcC
Q 040956 946 HYHPLTKEFAS 956 (1085)
Q Consensus 946 H~~el~~~~~~ 956 (1085)
|+++++. .++
T Consensus 230 H~~~~i~-~aD 239 (261)
T cd03271 230 HNLDVIK-CAD 239 (261)
T ss_pred CCHHHHH-hCC
Confidence 9999876 344
No 385
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=2.5e-10 Score=144.49 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=106.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..++++|++..|... .+..|+++++|.++ +|++++|+||+||||||+++.+....
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~----~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIP----SGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL 422 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeC----CCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch
Confidence 469999999988543 24689999999998 79999999999999999999985422
Q ss_pred --HHhhcccccccccc--ccchHHHHHH---------------HcCCccc---cc---------cc--cchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADTIFT---------------RLGATDR---IM---------TG--ESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~I~t---------------rig~~D~---i~---------~~--~Stf~~Em~ela 896 (1085)
+..|+| .|.++.. ..++.++|.- ..++.+- +. .| +|..+.....+|
T Consensus 423 ~~lr~~ig-lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIA 501 (1228)
T KOG0055|consen 423 KWLRSQIG-LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIA 501 (1228)
T ss_pred HHHHhhcC-eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHH
Confidence 446777 6666531 2222222210 0011110 01 11 344444444577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
++| +.+|.++||||+++++|+.. ..+....|+++.+ |.|+|+++|.+..+.. ++.
T Consensus 502 Ral--v~~P~ILLLDEaTSaLD~~s-e~~Vq~ALd~~~~--grTTivVaHRLStIrn-aD~ 556 (1228)
T KOG0055|consen 502 RAL--VRNPKILLLDEATSALDAES-ERVVQEALDKASK--GRTTIVVAHRLSTIRN-ADK 556 (1228)
T ss_pred HHH--HhCCCEEEecCcccccCHHH-HHHHHHHHHHhhc--CCeEEEEeeehhhhhc-cCE
Confidence 777 89999999999999988666 4556666666543 7899999999988776 443
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.11 E-value=3.6e-10 Score=151.66 Aligned_cols=153 Identities=19% Similarity=0.238 Sum_probs=103.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+...|-. +...|++|++|.+. +|+.++|+|++|||||||++++.++.
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~----~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVE----GGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEc----CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHH
Confidence 35999999988832 23689999999998 89999999999999999999997653
Q ss_pred -HHhhcccccccccccc--chHH--------------HHHHHcCCcccc-----------cc---ccchhhHHhHHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLAD--------------TIFTRLGATDRI-----------MT---GESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d--------------~I~trig~~D~i-----------~~---~~Stf~~Em~ela~i 898 (1085)
+..+++ +||++..-+ ++-+ ..+.+.++.+.+ .. ++|.....+.-+|++
T Consensus 1289 ~lR~~is-~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARA 1367 (1490)
T TIGR01271 1289 TWRKAFG-VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367 (1490)
T ss_pred HHHhceE-EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHH
Confidence 223344 788765221 1111 123333333221 11 234444445557888
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
| +.++++||||||+++.|......| ...+.... .+||+|++||.++.+..+
T Consensus 1368 L--Lr~~~ILlLDEaTS~lD~~Te~~I-~~~L~~~~--~~~TvI~IaHRl~ti~~~ 1418 (1490)
T TIGR01271 1368 I--LSKAKILLLDEPSAHLDPVTLQII-RKTLKQSF--SNCTVILSEHRVEALLEC 1418 (1490)
T ss_pred H--hCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHc--CCCEEEEEecCHHHHHhC
Confidence 7 899999999999888886553333 33333322 379999999999877653
No 387
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.10 E-value=4.5e-10 Score=120.93 Aligned_cols=148 Identities=13% Similarity=0.110 Sum_probs=84.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------HH-hhccccccccc
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------IL-AQLGCFVPCEM 862 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------il-aqiG~~VPa~~ 862 (1085)
.|.++|.+ .| ++..+.+++++ ++++|+||||+||||+|++|..+. .. .++| ++|...
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~---------~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~ 68 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK---------SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNS 68 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC---------CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCC
Confidence 36777765 44 34456666665 279999999999999999996321 11 2333 233221
Q ss_pred cc---------cchHH-------------------------HHHHHcCCcccc---ccccchhhHHhHHHHHHHHh--CC
Q 040956 863 CV---------LSLAD-------------------------TIFTRLGATDRI---MTGESTFLVECTETASVLQK--AT 903 (1085)
Q Consensus 863 a~---------i~~~d-------------------------~I~trig~~D~i---~~~~Stf~~Em~ela~iL~~--at 903 (1085)
.. .-.+. .+...++..+.. ....|..+.....+++++.. ..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 69 AGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred CCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccC
Confidence 10 00010 011111222211 22233334344446665522 14
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|+++|+|||++|.|+..... .+.++..+. + +.++|++||+.++. .++++
T Consensus 149 ~p~ililDEPt~gLD~~~~~~-l~~~l~~~~-~-~~~~iivs~~~~~~-~~~d~ 198 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSI-VANYIKERT-K-NAQFIVISLRNNMF-ELADR 198 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHH-HHHHHHHHc-C-CCEEEEEECcHHHH-HhCCE
Confidence 679999999999999777543 445666653 2 57899999997654 45554
No 388
>PLN03130 ABC transporter C family member; Provisional
Probab=99.09 E-value=4.7e-10 Score=151.09 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=106.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH---------hhcccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------AQLGCFVP 859 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------aqiG~~VP 859 (1085)
..|+++|+...|-. ..+.++++|++|.++ +|+.++|+||+||||||||+.+.+..-. .+++ |||
T Consensus 613 ~~I~~~nvsf~y~~--~~~~~vL~~inl~i~----~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Ia-yv~ 685 (1622)
T PLN03130 613 PAISIKNGYFSWDS--KAERPTLSNINLDVP----VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVA-YVP 685 (1622)
T ss_pred CceEEEeeEEEccC--CCCCceeeceeEEec----CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEE-EEc
Confidence 35899999887721 113579999999998 8999999999999999999999765322 2344 888
Q ss_pred ccccc--cchHHH--------------HHHHcCCccc-----------ccc---ccchhhHHhHHHHHHHHhCCCCcEEE
Q 040956 860 CEMCV--LSLADT--------------IFTRLGATDR-----------IMT---GESTFLVECTETASVLQKATQDSLVI 909 (1085)
Q Consensus 860 a~~a~--i~~~d~--------------I~trig~~D~-----------i~~---~~Stf~~Em~ela~iL~~at~~sLvL 909 (1085)
++..- -++-|+ +...-+..++ +.. .+|........+|+++ ..+++++|
T Consensus 686 Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl--y~~~~IlL 763 (1622)
T PLN03130 686 QVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV--YSNSDVYI 763 (1622)
T ss_pred CccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH--hCCCCEEE
Confidence 86421 122222 2222222111 111 2344444444577777 89999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 910 LDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 910 LDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
||||+++.|+..+..+...++..+. .++|+|++||..+.+...
T Consensus 764 LDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~a 806 (1622)
T PLN03130 764 FDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQV 806 (1622)
T ss_pred ECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHHhC
Confidence 9999999998777666666655443 378999999999887654
No 389
>PTZ00243 ABC transporter; Provisional
Probab=99.09 E-value=4.9e-10 Score=150.65 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=101.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. +...|++|++|.+. +|+.++|+|++|||||||++++..+.
T Consensus 1308 ~I~f~nVsf~Y~~---~~~~vL~~vsf~I~----~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE---GLPLVLRGVSFRIA----PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred eEEEEEEEEEeCC---CCCceeecceEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHH
Confidence 5999999988831 23469999999998 89999999999999999999995432
Q ss_pred -HHhhcccccccccccc--chHHH--------------HHHHcCCcccc-----------cc---ccchhhHHhHHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLADT--------------IFTRLGATDRI-----------MT---GESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d~--------------I~trig~~D~i-----------~~---~~Stf~~Em~ela~i 898 (1085)
+-.++| +||++..-+ ++.++ .+...|+.+.+ .. .+|.....+..+|++
T Consensus 1381 ~LR~~I~-iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARA 1459 (1560)
T PTZ00243 1381 ELRRQFS-MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARA 1459 (1560)
T ss_pred HHHhcce-EECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHH
Confidence 234566 889875221 12211 22333333221 11 233333344457777
Q ss_pred HHhCCC-CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 899 LQKATQ-DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 899 L~~at~-~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
| +.+ +.+|||||++++.|+..-..| ...+.... .++|+|+++|.++.+..+
T Consensus 1460 L--L~~~~~ILlLDEATSaLD~~te~~I-q~~L~~~~--~~~TvI~IAHRl~ti~~~ 1511 (1560)
T PTZ00243 1460 L--LKKGSGFILMDEATANIDPALDRQI-QATVMSAF--SAYTVITIAHRLHTVAQY 1511 (1560)
T ss_pred H--hcCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHC--CCCEEEEEeccHHHHHhC
Confidence 7 774 799999999888876553333 33333322 379999999999887654
No 390
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.08 E-value=1.3e-09 Score=146.69 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=101.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. +...|++|++|+++ +|+.++|+|++|||||||++.+..+.
T Consensus 1284 ~I~f~nVsf~Y~~---~~~~vL~~is~~I~----~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE---DLDLVLRHINVTIH----GGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred cEEEEEEEEEeCC---CCcccccceeEEEc----CCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHH
Confidence 5999999988831 22479999999998 89999999999999999999995532
Q ss_pred -HHhhcccccccccccc--chHHH--------------HHHHcCCcc-----------cccc---ccchhhHHhHHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLADT--------------IFTRLGATD-----------RIMT---GESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d~--------------I~trig~~D-----------~i~~---~~Stf~~Em~ela~i 898 (1085)
+..++| +||++..-+ ++.++ .....++.+ .+.. .+|.....+..+|++
T Consensus 1357 ~LR~~i~-iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARA 1435 (1522)
T TIGR00957 1357 DLRFKIT-IIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARA 1435 (1522)
T ss_pred HHHhcCe-EECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHH
Confidence 334566 888875211 11111 222223222 1222 233334444557777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
| +.++.++||||++++.|..... .....+.... .++|+|+++|..+.+..+
T Consensus 1436 L--Lr~~~ILiLDEaTSalD~~Te~-~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~ 1486 (1522)
T TIGR00957 1436 L--LRKTKILVLDEATAAVDLETDN-LIQSTIRTQF--EDCTVLTIAHRLNTIMDY 1486 (1522)
T ss_pred H--HcCCCEEEEECCcccCCHHHHH-HHHHHHHHHc--CCCEEEEEecCHHHHHhC
Confidence 7 8999999999998888865433 3333333322 379999999999887654
No 391
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.07 E-value=5.4e-10 Score=149.19 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=101.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+++.|... .+..|++|++|.++ +|+.++|+||+||||||+++++....-
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~----~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~ 1238 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCD----SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTN 1238 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEc----CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccc
Confidence 59999999988321 13479999999998 899999999999999999999966422
Q ss_pred --------------------------------------------------------Hhhcccccccccc--ccchHHHH-
Q 040956 851 --------------------------------------------------------LAQLGCFVPCEMC--VLSLADTI- 871 (1085)
Q Consensus 851 --------------------------------------------------------laqiG~~VPa~~a--~i~~~d~I- 871 (1085)
..++| |||++.. ..++.++|
T Consensus 1239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~-~V~Qep~LF~gTIreNI~ 1317 (1466)
T PTZ00265 1239 EQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS-IVSQEPMLFNMSIYENIK 1317 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc-EeCCCCccccccHHHHHh
Confidence 12355 7777642 22222222
Q ss_pred --------------HHHcCCcccc---cc-----------ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 040956 872 --------------FTRLGATDRI---MT-----------GESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGY 923 (1085)
Q Consensus 872 --------------~trig~~D~i---~~-----------~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~ 923 (1085)
....++.|-+ .. .+|........+|++| +.+|.++|||||++++|+....
T Consensus 1318 ~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARAL--lr~p~ILLLDEaTSaLD~~sE~ 1395 (1466)
T PTZ00265 1318 FGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL--LREPKILLLDEATSSLDSNSEK 1395 (1466)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHH--hcCCCEEEEeCcccccCHHHHH
Confidence 1122222211 11 2333333344477777 8999999999998888866544
Q ss_pred HHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 924 AIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 924 aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
.+. ..+..+....++|+|++||.+..+..
T Consensus 1396 ~I~-~~L~~~~~~~~~TvIiIaHRlsti~~ 1424 (1466)
T PTZ00265 1396 LIE-KTIVDIKDKADKTIITIAHRIASIKR 1424 (1466)
T ss_pred HHH-HHHHHHhccCCCEEEEEechHHHHHh
Confidence 333 33344431237899999999988765
No 392
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.07 E-value=5.8e-10 Score=137.28 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=113.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.+.++++...........+.++|+|+.... +|++++|.||.||||||||+.+++-.-
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~----~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAK----PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEe----cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh
Confidence 355555554432211124789999999987 799999999999999999999976431
Q ss_pred -Hhhccccccccccc---------------------------cchHHHHHHHcCCc---ccccc-----ccchhhHHhHH
Q 040956 851 -LAQLGCFVPCEMCV---------------------------LSLADTIFTRLGAT---DRIMT-----GESTFLVECTE 894 (1085)
Q Consensus 851 -laqiG~~VPa~~a~---------------------------i~~~d~I~trig~~---D~i~~-----~~Stf~~Em~e 894 (1085)
+.++-+||+++..- ...++.+...+|.. |.+.. |.|. +|.++
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG--GErkR 178 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG--GERKR 178 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc--chhhH
Confidence 22334477776421 12356677777754 33332 3443 57788
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech--hHHHhhcC
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH--PLTKEFAS 956 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~--el~~~~~~ 956 (1085)
++-++...++|+++++||||+|+|...+..+. .+|..++++ |+|||++=|.+ ++...+++
T Consensus 179 vsia~Ell~~P~iLflDEPTSGLDS~sA~~vv-~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~ 240 (613)
T KOG0061|consen 179 VSIALELLTDPSILFLDEPTSGLDSFSALQVV-QLLKRLARS-GRTVICTIHQPSSELFELFDK 240 (613)
T ss_pred HHHHHHHHcCCCEEEecCCCCCcchhhHHHHH-HHHHHHHhC-CCEEEEEEeCCcHHHHHHHhH
Confidence 88888889999999999999999999977654 477788887 99999999986 34455544
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.06 E-value=5.2e-10 Score=119.20 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=72.6
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHH--------------hhcccc------ccccc----cccchH--HHHHHHcCCccc
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVIL--------------AQLGCF------VPCEM----CVLSLA--DTIFTRLGATDR 880 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~il--------------aqiG~~------VPa~~----a~i~~~--d~I~trig~~D~ 880 (1085)
+.+|+||||+||||+|..|....-- -+.|.. +.... ...... +.+...+...+.
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTSNKA 102 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhccccc
Confidence 7899999999999999998643100 001100 00000 001101 122222222222
Q ss_pred ---cccccchhhHHhHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh--cCceEEEEEechhHHHh
Q 040956 881 ---IMTGESTFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER--INCRLLFATHYHPLTKE 953 (1085)
Q Consensus 881 ---i~~~~Stf~~Em~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~--~~~tiL~aTH~~el~~~ 953 (1085)
....+|..+.....++.++.. +.+|+++|||||++|+|......+.. ++..+.+. .++++|++||+++.+..
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~-~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD-LLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH-HHHHHHhcCCCcEEEEEECCccccccc
Confidence 233344444444456655533 48999999999999999777655444 44444332 23589999999998876
Q ss_pred h
Q 040956 954 F 954 (1085)
Q Consensus 954 ~ 954 (1085)
+
T Consensus 182 ~ 182 (198)
T cd03276 182 S 182 (198)
T ss_pred c
Confidence 5
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5e-10 Score=126.37 Aligned_cols=149 Identities=21% Similarity=0.211 Sum_probs=88.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchH
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLA 868 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~ 868 (1085)
|+|-+.++.+.|. +.++....++|+++ -...++|+||||.||||||+.+.+- +-.+-|-.---....+++|
T Consensus 585 PvLGlH~VtFgy~----gqkpLFkkldFGiD----mdSRiaIVGPNGVGKSTlLkLL~Gk-l~P~~GE~RKnhrL~iG~F 655 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP----GQKPLFKKLDFGID----MDSRIAIVGPNGVGKSTLLKLLIGK-LDPNDGELRKNHRLRIGWF 655 (807)
T ss_pred CeeecccccccCC----CCCchhhccccccc----ccceeEEECCCCccHHHHHHHHhcC-CCCCcchhhccceeeeech
Confidence 7898988888873 56778888888876 3457999999999999999988542 1111111111112233333
Q ss_pred HH---------------H--------------HHHcCCc----cccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCC
Q 040956 869 DT---------------I--------------FTRLGAT----DRIMTGESTFLVECTETASVLQKATQDSLVILDELGR 915 (1085)
Q Consensus 869 d~---------------I--------------~trig~~----D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgr 915 (1085)
|+ + +.++|.. ---+..+|....-...++.+. +..|+++|||||+.
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa--l~~PDvlILDEPTN 733 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA--LGGPDVLILDEPTN 733 (807)
T ss_pred hhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh--cCCCCEEEecCCCC
Confidence 32 1 1122211 111223333333333344444 68999999999966
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 916 GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 916 GTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
.++...--+ +-+.+.+ .+..+|++|||..|+..
T Consensus 734 NLDIESIDA----LaEAIne-y~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 734 NLDIESIDA----LAEAINE-YNGGVIMVSHDERLIVE 766 (807)
T ss_pred CcchhhHHH----HHHHHHh-ccCcEEEEecccceeee
Confidence 666444333 3444444 35669999999888654
No 395
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.06 E-value=7e-10 Score=126.94 Aligned_cols=149 Identities=22% Similarity=0.295 Sum_probs=102.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhh---------------------h
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC---------------------L 847 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~---------------------~ 847 (1085)
..|+++|+...| ..+++|+.||+|.+. +|+.++|+||+|+||||+||.+- .
T Consensus 536 G~i~fsnvtF~Y----~p~k~vl~disF~v~----pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 536 GKIEFSNVTFAY----DPGKPVLSDISFTVQ----PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CeEEEEEeEEec----CCCCceeecceEEec----CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 358999999888 357899999999997 89999999999999999999882 1
Q ss_pred HHHHhhcccccccccccc--chHH---------------------HHHHHc-CCcccc-----ccc--cchhhHHhHHHH
Q 040956 848 AVILAQLGCFVPCEMCVL--SLAD---------------------TIFTRL-GATDRI-----MTG--ESTFLVECTETA 896 (1085)
Q Consensus 848 i~ilaqiG~~VPa~~a~i--~~~d---------------------~I~tri-g~~D~i-----~~~--~Stf~~Em~ela 896 (1085)
..+..+|| .||++..-+ ++++ .|..|+ +.++-. ..| +|........+|
T Consensus 608 ~SLRs~IG-VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 608 SSLRSSIG-VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHHHhcC-cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 22557889 899975211 1111 122222 111111 112 233333333466
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
+.+ ...|++++|||.++.+|+....+| .+.+..+.. +.|.|++.|-+.-+
T Consensus 687 Rti--LK~P~iIlLDEATSALDT~tER~I-QaaL~rlca--~RTtIVvAHRLSTi 736 (790)
T KOG0056|consen 687 RTI--LKAPSIILLDEATSALDTNTERAI-QAALARLCA--NRTTIVVAHRLSTI 736 (790)
T ss_pred HHH--hcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhc--CCceEEEeeeehhe
Confidence 666 899999999999888887765554 456666764 67889999986543
No 396
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.04 E-value=2.3e-10 Score=113.67 Aligned_cols=97 Identities=27% Similarity=0.331 Sum_probs=65.2
Q ss_pred ccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH---------------------Hhhcccccccccc---ccc
Q 040956 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------------LAQLGCFVPCEMC---VLS 866 (1085)
Q Consensus 811 ~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------------laqiG~~VPa~~a---~i~ 866 (1085)
+++++|.+. +|++++|+||||+|||||||++++..- ..+++ |+|+... ..+
T Consensus 1 L~~v~~~i~----~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~t 75 (137)
T PF00005_consen 1 LKNVSLEIK----PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIG-YVPQDPQLFPGLT 75 (137)
T ss_dssp EEEEEEEEE----TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEE-EEESSHCHHTTSB
T ss_pred CCceEEEEc----CCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 367888887 789999999999999999999976431 22333 5666521 111
Q ss_pred --------hHHHHHHHcCCcc---ccc----cccchhhHHhHHHHHHHHhCCCCcEEEEeCCC
Q 040956 867 --------LADTIFTRLGATD---RIM----TGESTFLVECTETASVLQKATQDSLVILDELG 914 (1085)
Q Consensus 867 --------~~d~I~trig~~D---~i~----~~~Stf~~Em~ela~iL~~at~~sLvLLDEpg 914 (1085)
.++.++..++..+ ... ..+|........++++| +.+++++|||||+
T Consensus 76 v~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al--~~~~~llllDEPt 136 (137)
T PF00005_consen 76 VRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARAL--LKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHH--HTTSSEEEEESTT
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHH--HcCCCEEEEeCCC
Confidence 2334566666433 233 44555555555677777 8999999999995
No 397
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.02 E-value=7.6e-10 Score=110.13 Aligned_cols=140 Identities=19% Similarity=0.115 Sum_probs=89.5
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------------Hhhccccc-----
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------------LAQLGCFV----- 858 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------------laqiG~~V----- 858 (1085)
++.-.+-++++++. +|+++-|.||+||||||||--+++..- -.|+|...
T Consensus 13 ~g~cLLa~~n~Tia----~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lL 88 (213)
T COG4136 13 PGSCLLANVNFTIA----KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALL 88 (213)
T ss_pred CCceEEEeeeEEec----CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccc
Confidence 34566778899987 799999999999999999988866430 12333211
Q ss_pred -c-------------cc---ccccchHHHHHHHcCCccccccccchhhHHhH---HHHHHHHhCCCCcEEEEeCCCCCCC
Q 040956 859 -P-------------CE---MCVLSLADTIFTRLGATDRIMTGESTFLVECT---ETASVLQKATQDSLVILDELGRGTS 918 (1085)
Q Consensus 859 -P-------------a~---~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~---ela~iL~~at~~sLvLLDEpgrGTs 918 (1085)
| +. .++-...+.-++++|...-......|.+++.. .+-++| ...|.+++||||++-+|
T Consensus 89 FphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~L--la~Pk~lLLDEPFS~LD 166 (213)
T COG4136 89 FPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRAL--LAQPKALLLDEPFSRLD 166 (213)
T ss_pred ccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHH--HhCcceeeeCCchhHHH
Confidence 1 10 12223344566676654444444444444433 233444 68899999999987766
Q ss_pred hHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 919 TFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 919 ~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
..-......-+...+.. .|..+|.+|||++.+.
T Consensus 167 ~ALR~qfR~wVFs~~r~-agiPtv~VTHD~~Dvp 199 (213)
T COG4136 167 VALRDQFRQWVFSEVRA-AGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCeEEEecccccCC
Confidence 54444444445555544 4888999999998765
No 398
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.01 E-value=3.2e-09 Score=119.97 Aligned_cols=165 Identities=21% Similarity=0.231 Sum_probs=110.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH------------------H
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------I 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------i 850 (1085)
++|.++|+...|-.. .+...+.++|+|++. +|+.++|+|.+|||||...+.|..+. +
T Consensus 5 ~lL~v~nLsV~f~~~-~~~~~aVk~isf~i~----~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQE-GGTVEAVKGISFDIE----AGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred cceeeeccEEEEecC-CcceEeeccceeeec----CCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 789999999888432 246789999999998 89999999999999999888875532 0
Q ss_pred H------------hhcccccccccc-ccchHH--------------------------HHHHHcCCccc------ccccc
Q 040956 851 L------------AQLGCFVPCEMC-VLSLAD--------------------------TIFTRLGATDR------IMTGE 885 (1085)
Q Consensus 851 l------------aqiG~~VPa~~a-~i~~~d--------------------------~I~trig~~D~------i~~~~ 885 (1085)
+ ..|| .+.++.+ .+.++- .++.++|..+- ....+
T Consensus 80 l~~se~~lr~iRG~~I~-MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL 158 (534)
T COG4172 80 LAASERQLRGVRGNKIG-MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL 158 (534)
T ss_pred hcCCHHHHhhhcccceE-EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc
Confidence 0 1222 2222221 111111 13445554332 12223
Q ss_pred chhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
|.......-+|.+| +++|+|+|.|||+..+|..-... ...++..|..+.|..++|+|||+.++..++++..|..
T Consensus 159 SGGqRQRVMIAMAL--an~P~lLIADEPTTALDVtvQaQ-IL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~ 232 (534)
T COG4172 159 SGGQRQRVMIAMAL--ANEPDLLIADEPTTALDVTVQAQ-ILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232 (534)
T ss_pred CcchhhHHHHHHHH--cCCCCeEeecCCcchhhhhhHHH-HHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe
Confidence 33333233366666 99999999999976666443333 3456777777889999999999999999999887764
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.00 E-value=1e-09 Score=114.97 Aligned_cols=122 Identities=14% Similarity=0.176 Sum_probs=74.3
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHHhhcc-----------c--cccccccccch-HHH-HHHHcCCccccccccchhhHH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVILAQLG-----------C--FVPCEMCVLSL-ADT-IFTRLGATDRIMTGESTFLVE 891 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ilaqiG-----------~--~VPa~~a~i~~-~d~-I~trig~~D~i~~~~Stf~~E 891 (1085)
+.+|+||||+|||++|..|+......... . -..+..+.+.+ ++. ++... ......-.|..+..
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~--~~~~~~~LS~Ge~~ 101 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVL--QGKVEQILSGGEKS 101 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEec--CCcCcccCCHHHHH
Confidence 88999999999999999987642111000 0 00111111110 000 11111 11111126666666
Q ss_pred hHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 892 CTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 892 m~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
...+++++.. ..+++++|+|||++|.|+.....+.. ++..+.+. ++++|++||+++...
T Consensus 102 r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~-g~tiIiiSH~~~~~~ 162 (178)
T cd03239 102 LSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKH-TSQFIVITLKKEMFE 162 (178)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhC-CCEEEEEECCHHHHh
Confidence 6677777743 36899999999999999877655444 55555554 789999999998775
No 400
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.00 E-value=2.8e-09 Score=116.53 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=43.6
Q ss_pred chhhHHhHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 886 STFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|..+.....+++++.. ..+++++|+|||++|+|+.....+. ..+..+.+ +.++|++||..+.. .++++.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~--~~~ii~~~h~~~~~-~~~d~i 230 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVA-NMIKELSD--GAQFITTTFRPELL-EVADKF 230 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC--CCEEEEEecCHHHH-hhCCEE
Confidence 3333333446666632 2468999999999999987755443 34444432 67788888886654 566543
No 401
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.99 E-value=1.9e-09 Score=118.68 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=46.8
Q ss_pred chhhHHhHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 886 STFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
|..+.....+++++.. ..+++++|||||++|+|+.....+. .++..+.+. |.++|++||+.++.. .++
T Consensus 157 S~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~-~~i~~~~~~-g~~vi~isH~~~~~~-~~d 226 (247)
T cd03275 157 SGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVA-SYIREQAGP-NFQFIVISLKEEFFS-KAD 226 (247)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHH-HHHHHhccC-CcEEEEEECCHHHHh-hCC
Confidence 4444444556666622 1358999999999999987765554 455555544 789999999988764 444
No 402
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.7e-09 Score=127.59 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=97.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|... .+..|++|++|++. +|++++|+||||+||||+...+--..
T Consensus 464 G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~----pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR--PDVPVLKNLSFTIR----PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINH 537 (716)
T ss_pred ceEEEEEeeeecCCC--CCchhhcCceeeeC----CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCH
Confidence 469999999999532 35689999999998 89999999999999999998873211
Q ss_pred --HHhhcccccccccc--ccchHHHHHH---------------HcCCcccc---ccc-----------cchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADTIFT---------------RLGATDRI---MTG-----------ESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~I~t---------------rig~~D~i---~~~-----------~Stf~~Em~ela 896 (1085)
+-.++| +|-++.- .-++.++|.- .-++.+-+ ..| +|........+|
T Consensus 538 ~~lr~~Ig-~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 538 KYLRRKIG-LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIA 616 (716)
T ss_pred HHHHHHee-eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHH
Confidence 234566 6655531 1222222210 00111111 111 223333334477
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++| ..+|.++||||.|+.+|... ..+....++.+.+ +.|+|++.|-+.-++.
T Consensus 617 RAL--lr~P~VLILDEATSALDaeS-E~lVq~aL~~~~~--~rTVlvIAHRLSTV~~ 668 (716)
T KOG0058|consen 617 RAL--LRNPRVLILDEATSALDAES-EYLVQEALDRLMQ--GRTVLVIAHRLSTVRH 668 (716)
T ss_pred HHH--hcCCCEEEEechhhhcchhh-HHHHHHHHHHhhc--CCeEEEEehhhhHhhh
Confidence 777 89999999999955555333 2233344444443 5899999999887764
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.96 E-value=3.2e-09 Score=120.10 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=109.4
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh-----------------ccccccccc----ccc
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ-----------------LGCFVPCEM----CVL 865 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-----------------iG~~VPa~~----a~i 865 (1085)
..++..|++|.++ +|++++|+|++|+||||+||+|.+...--- +...+|.+. ...
T Consensus 395 eryvlr~vNL~ik----pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~ 470 (593)
T COG2401 395 ERYVLRNLNLEIK----PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEV 470 (593)
T ss_pred eeeeeeceeeEec----CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCch
Confidence 4689999999998 899999999999999999999987542110 111233321 112
Q ss_pred chHH-------------HHHHHcCCccccc-----cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHH
Q 040956 866 SLAD-------------TIFTRLGATDRIM-----TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAY 927 (1085)
Q Consensus 866 ~~~d-------------~I~trig~~D~i~-----~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~ 927 (1085)
++.+ .|+.+.|+.|-.. ..+|+...|-..+|+++ +..+.++++||.++-+|+..+..+|.
T Consensus 471 tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkll--aerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 471 TILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL--AERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred hHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHH--hcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 2333 4667777777553 46788888999999999 89999999999999999999888888
Q ss_pred HHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 928 AVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 928 avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
.+-+ |+.+.+.|.+++||..++.+.+.
T Consensus 549 kise-laRe~giTlivvThrpEv~~AL~ 575 (593)
T COG2401 549 KISE-LAREAGITLIVVTHRPEVGNALR 575 (593)
T ss_pred HHHH-HHHHhCCeEEEEecCHHHHhccC
Confidence 7655 55567999999999999998775
No 404
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.96 E-value=5.2e-09 Score=115.37 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=47.4
Q ss_pred cccchhhHHhHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 883 TGESTFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 883 ~~~Stf~~Em~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
..+|..+.....++++|.. ..++.++|+|||++|+|+.....+.. ++..+. + |.++|++||..+..+.
T Consensus 165 ~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~-~-g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 165 TELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF-K-GSQFIVVSLKEGMFNN 234 (251)
T ss_pred cccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc-C-CCEEEEEECCHHHHHh
Confidence 3455555556667777732 25789999999999999877554433 444442 3 7789999999777664
No 405
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.89 E-value=2e-08 Score=113.20 Aligned_cols=152 Identities=18% Similarity=0.104 Sum_probs=101.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc-c-----cccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG-C-----FVPCEM 862 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG-~-----~VPa~~ 862 (1085)
..|+++|.++.|.. ..|-.+.|++++. +|+++.|+|.||||||||++.+.++. -.|.| . +|.++.
T Consensus 321 ~~lelrnvrfay~~----~~FhvgPiNl~ik----rGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQD----NAFHVGPINLTIK----RGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAEQ 391 (546)
T ss_pred cceeeeeeeeccCc----ccceecceeeEEe----cCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCCC
Confidence 35999999999953 3488888999887 89999999999999999999997653 22222 1 222221
Q ss_pred c--ccchHHHHHHHcCCcccc---------------------------------ccccchhhHHhHHHHHHHHhCCCCcE
Q 040956 863 C--VLSLADTIFTRLGATDRI---------------------------------MTGESTFLVECTETASVLQKATQDSL 907 (1085)
Q Consensus 863 a--~i~~~d~I~trig~~D~i---------------------------------~~~~Stf~~Em~ela~iL~~at~~sL 907 (1085)
- --+.|..||+....-|.+ ...+||. .-+++|.++..+.++++
T Consensus 392 ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStG--QkKRlAll~AllEeR~I 469 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG--QKKRLALLLALLEERDI 469 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccc--hHHHHHHHHHHHhhCCe
Confidence 0 012233333332211111 1123332 34567777777899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
+++||...--||.=+......++-.|.+ .|.|++.+|||-.-..
T Consensus 470 lv~DEWAADQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~ 513 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFI 513 (546)
T ss_pred EEeehhhccCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhh
Confidence 9999999998988776666666665554 5999999999865433
No 406
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.87 E-value=2.5e-08 Score=112.93 Aligned_cols=165 Identities=24% Similarity=0.211 Sum_probs=103.4
Q ss_pred CCCEEEEEcceeeeeecC------CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh-------
Q 040956 787 GGPVLKIKGLWHPFALGE------NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ------- 853 (1085)
Q Consensus 787 ~~~~l~ik~lrhp~~~~~------~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq------- 853 (1085)
..+.++.++++.-|.... .....+.++++|+.. +|+.++|+|.+|||||||=+.+..+. -++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~----~gqTlGlVGESGSGKsTlG~allrL~-~s~G~I~F~G 347 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLR----RGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDG 347 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEec----CCCeEEEEecCCCCcchHHHHHHhhc-CcCceEEECC
Confidence 347899999877664221 122357789999987 79999999999999999988774432 111
Q ss_pred -------------------------ccccccccc-------------cccch------HHHHHHHcCCccc-cccccchh
Q 040956 854 -------------------------LGCFVPCEM-------------CVLSL------ADTIFTRLGATDR-IMTGESTF 888 (1085)
Q Consensus 854 -------------------------iG~~VPa~~-------------a~i~~------~d~I~trig~~D~-i~~~~Stf 888 (1085)
.|+.-|--. -.++- +-..+..+|...+ .......|
T Consensus 348 ~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF 427 (534)
T COG4172 348 QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF 427 (534)
T ss_pred ccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence 111111100 00000 0012333443322 22333445
Q ss_pred hHHhH---HHHHHHHhCCCCcEEEEeCCCCCCChHHHH--HHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 889 LVECT---ETASVLQKATQDSLVILDELGRGTSTFDGY--AIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 889 ~~Em~---ela~iL~~at~~sLvLLDEpgrGTs~~Dg~--aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+++.. .+|+++ +.+|.+|+|||| ||.+|.. +-...++..|.++.+-.-||+|||+..+..++++.-|.
T Consensus 428 SGGQRQRIAIARAl--iLkP~~i~LDEP---TSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm 500 (534)
T COG4172 428 SGGQRQRIAIARAL--ILKPELILLDEP---TSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVM 500 (534)
T ss_pred CcchhhHHHHHHHH--hcCCcEEEecCC---chHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEE
Confidence 55433 366666 899999999999 6666632 22345667777778899999999999999998865443
No 407
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.86 E-value=6.2e-09 Score=112.23 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=38.6
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcC-ceEEEEEechhHHHhhcC
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERIN-CRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~-~tiL~aTH~~el~~~~~~ 956 (1085)
+.+|.++|+|||++|+|+.....+. .++..+.++.+ .++|++||+.......++
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 146 LTRCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccCCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 5799999999999999988765544 44444544324 579999999765544444
No 408
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.86 E-value=2.3e-09 Score=109.19 Aligned_cols=133 Identities=22% Similarity=0.226 Sum_probs=87.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH--------------------------HHhh-------------ccccccccccc
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV--------------------------ILAQ-------------LGCFVPCEMCV 864 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~--------------------------ilaq-------------iG~~VPa~~a~ 864 (1085)
.|+++-++||||+||||||-.++++. +++| .-.++|+ ...
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~-~~~ 102 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD-KTR 102 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch-HHH
Confidence 68899999999999999998886643 1222 1122333 223
Q ss_pred cchHHHHHHHcCCccccccccchhhH-HhHH--HHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 040956 865 LSLADTIFTRLGATDRIMTGESTFLV-ECTE--TASVLQKA-----TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936 (1085)
Q Consensus 865 i~~~d~I~trig~~D~i~~~~Stf~~-Em~e--la~iL~~a-----t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~ 936 (1085)
-+.++.|...++..|.+....+..++ |.++ +|...-.. ....|+|+|||..++|.... ....++++++...
T Consensus 103 a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~-~aLdrll~~~c~~ 181 (248)
T COG4138 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ-SALDRLLSALCQQ 181 (248)
T ss_pred HHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH-HHHHHHHHHHHhC
Confidence 33455566666677776666555553 3332 22222111 23579999999888886554 4466788898876
Q ss_pred cCceEEEEEechhHHHhhcCccc
Q 040956 937 INCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 937 ~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
|.++|++.||+.-+-.-++...
T Consensus 182 -G~~vims~HDLNhTLrhA~~~w 203 (248)
T COG4138 182 -GLAIVMSSHDLNHTLRHAHRAW 203 (248)
T ss_pred -CcEEEEeccchhhHHHHHHHHH
Confidence 9999999999887766555443
No 409
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.86 E-value=6.8e-08 Score=116.43 Aligned_cols=153 Identities=20% Similarity=0.132 Sum_probs=97.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------Hh-hc-ccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------LA-QL-GCFVP 859 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------la-qi-G~~VP 859 (1085)
..|.++|+.--. .++....++.++.+. +|+.++|+||||+|||||+|+|+++-- +. .. -.|+|
T Consensus 391 ~~i~~~nl~l~~----p~~~~ll~~l~~~v~----~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflp 462 (604)
T COG4178 391 HGITLENLSLRT----PDGQTLLSELNFEVR----PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLP 462 (604)
T ss_pred ceeEEeeeeEEC----CCCCeeeccceeeeC----CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEec
Confidence 568888764322 234588899999987 799999999999999999999987531 11 11 12444
Q ss_pred ccc----------------c-ccch--HHH---------HHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEe
Q 040956 860 CEM----------------C-VLSL--ADT---------IFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILD 911 (1085)
Q Consensus 860 a~~----------------a-~i~~--~d~---------I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLD 911 (1085)
+.. . .++- +-. +.++++..++-..-+|........+|++| .++|.+++||
T Consensus 463 Q~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil--L~kP~~v~LD 540 (604)
T COG4178 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL--LHKPKWVFLD 540 (604)
T ss_pred CCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH--HcCCCEEEEe
Confidence 321 0 0111 112 33444444444445555555556688888 9999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHh-cCceEEEEEechhHHHhhc
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~-~~~tiL~aTH~~el~~~~~ 955 (1085)
|-+++.|+.... .+.+.+.++ .++++|-+.|-..+-....
T Consensus 541 EATsALDe~~e~----~l~q~l~~~lp~~tvISV~Hr~tl~~~h~ 581 (604)
T COG4178 541 EATSALDEETED----RLYQLLKEELPDATVISVGHRPTLWNFHS 581 (604)
T ss_pred cchhccChHHHH----HHHHHHHhhCCCCEEEEeccchhhHHHHh
Confidence 997776644322 233333232 5899999999988765443
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2e-08 Score=116.76 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=135.6
Q ss_pred cHHHHHHHHHHhhccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceec
Q 040956 695 GLDKFLTQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLIL 774 (1085)
Q Consensus 695 ~l~~~l~~~e~~i~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~ 774 (1085)
+++.|...-+++..+.-.+|. ++...+.+++.+...|.-....-..+.+.|+.|+-+-.+-..-......+..|+-.
T Consensus 279 N~~~Fvk~k~E~~~n~qrefe---~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~ 355 (582)
T KOG0062|consen 279 NYSQFVKTKPEAKKNQQREFE---VQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEG 355 (582)
T ss_pred cHHHHHHhhHHhhhhhhhhcc---hHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCC
Confidence 455555554443322111222 33344566777777776666566677778877776555432222222233444422
Q ss_pred CCCCCCcccCCCCCCEEEEEcceeeeeecCCCCc-ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh-HH---
Q 040956 775 PQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGL-PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL-AV--- 849 (1085)
Q Consensus 775 ~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~~~~-~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~-i~--- 849 (1085)
+ .-.+|.+.|.++..-|- .+. .+...++++.+ ....++++|+||.||||+++++.+ ..
T Consensus 356 e---------~~~~p~l~i~~V~f~y~----p~~y~~~~~~~~d~e----~~sRi~~vg~ng~gkst~lKi~~~~l~~~r 418 (582)
T KOG0062|consen 356 E---------VLSPPNLRISYVAFEYT----PSEYQWRKQLGLDRE----SDSRISRVGENGDGKSTLLKILKGDLTPTR 418 (582)
T ss_pred C---------cCCCCeeEEEeeeccCC----CcchhhhhccCCccc----hhhhhheeccCchhHHHHHHHHhccCCccc
Confidence 1 12347888887775542 223 56666777665 345789999999999999999854 10
Q ss_pred ----HH--hhccccccccc-----cccc---------------hHHHHHHHcCCccccc-cccchhhHH-hHHHHHHHHh
Q 040956 850 ----IL--AQLGCFVPCEM-----CVLS---------------LADTIFTRLGATDRIM-TGESTFLVE-CTETASVLQK 901 (1085)
Q Consensus 850 ----il--aqiG~~VPa~~-----a~i~---------------~~d~I~trig~~D~i~-~~~Stf~~E-m~ela~iL~~ 901 (1085)
+- -.+| |..+.. .... -+.+-+.++|..-.+. ..+.+.+++ ..+++.+.-.
T Consensus 419 gi~~~~~r~ri~-~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 419 GIVGRHPRLRIK-YFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ceeeecccceec-chhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh
Confidence 00 0011 000000 0000 1112345566543332 233444443 2344444433
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
..+|.|++|||| ||++|..+ ..|+.+.|.. .+.-+|++||+.+++..++...++.
T Consensus 498 ~~~PhlLVLDEP---TNhLD~ds-l~AL~~Al~~-F~GGVv~VSHd~~fi~~~c~E~Wvv 552 (582)
T KOG0062|consen 498 WNNPHLLVLDEP---TNHLDRDS-LGALAKALKN-FNGGVVLVSHDEEFISSLCKELWVV 552 (582)
T ss_pred cCCCcEEEecCC---CccccHHH-HHHHHHHHHh-cCCcEEEEECcHHHHhhcCceeEEE
Confidence 789999999999 88888654 3456666554 4667999999999999888765543
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.79 E-value=3.8e-08 Score=112.88 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=99.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc-----------------------------------------ccccc-
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC-----------------------------------------FVPCE- 861 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~-----------------------------------------~VPa~- 861 (1085)
+|.+++|+||||-||||.+|++++.. ....|- ++|.-
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel-~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGEL-KPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCcc-ccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 68999999999999999999998743 111221 11210
Q ss_pred ----------ccccchHHHHHHHcCCccccccccchhh-HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 040956 862 ----------MCVLSLADTIFTRLGATDRIMTGESTFL-VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVF 930 (1085)
Q Consensus 862 ----------~a~i~~~d~I~trig~~D~i~~~~Stf~-~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avl 930 (1085)
....+.+|.+..+++...-+....+..+ +|++++|-+...+.+.++.++|||++=+|.......|. ++
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar-~I 256 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR-VI 256 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH-HH
Confidence 1233566777888887777777777766 46777776666689999999999977777777776554 56
Q ss_pred HHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 931 RQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 931 e~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
..|++. +.++|++.||+..++.+++..+|.
T Consensus 257 rel~~~-~k~ViVVEHDLavLD~lsD~vhI~ 286 (591)
T COG1245 257 RELAED-GKYVIVVEHDLAVLDYLSDFVHIL 286 (591)
T ss_pred HHHhcc-CCeEEEEechHHHHHHhhheeEEE
Confidence 667765 789999999999999998876554
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=7e-08 Score=122.97 Aligned_cols=81 Identities=23% Similarity=0.214 Sum_probs=53.7
Q ss_pred HHcCCcc-ccccccchhhHH---hHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 873 TRLGATD-RIMTGESTFLVE---CTETASVLQKA-TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 873 trig~~D-~i~~~~Stf~~E---m~ela~iL~~a-t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
..+|... .+....++++.+ ...++++|... .++.|+|||||++|+++.+...+. .++..+.++ |.++|++||+
T Consensus 813 ~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~-G~TVIvi~H~ 890 (924)
T TIGR00630 813 CDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQ-GNTVVVIEHN 890 (924)
T ss_pred HHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCC
Confidence 3455543 233334444444 44466666221 358999999999999988866544 456666655 8899999999
Q ss_pred hhHHHhhcC
Q 040956 948 HPLTKEFAS 956 (1085)
Q Consensus 948 ~el~~~~~~ 956 (1085)
++++. .++
T Consensus 891 ~~~i~-~aD 898 (924)
T TIGR00630 891 LDVIK-TAD 898 (924)
T ss_pred HHHHH-hCC
Confidence 99875 354
No 413
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.75 E-value=5.8e-08 Score=123.48 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=100.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhh---------------------hH
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC---------------------LA 848 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~---------------------~i 848 (1085)
.|+++|+...|.. ..+..|++|++|++. .|+.++|+||+||||||.+-++- +-
T Consensus 987 ~I~~~~V~F~YPs--RP~~~Il~~l~l~i~----~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT--RPDVPVLNNLSLSIR----AGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred EEEEeeeEeeCCC--CCCchhhcCCcEEec----CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH
Confidence 4899999988853 246799999999998 79999999999999999998771 11
Q ss_pred HHHhhcccccccccc--ccchHHHHHHH------------c---CC---ccccccc-----------cchhhHHhHHHHH
Q 040956 849 VILAQLGCFVPCEMC--VLSLADTIFTR------------L---GA---TDRIMTG-----------ESTFLVECTETAS 897 (1085)
Q Consensus 849 ~ilaqiG~~VPa~~a--~i~~~d~I~tr------------i---g~---~D~i~~~-----------~Stf~~Em~ela~ 897 (1085)
.+..|+| .|.++.. .-++.++|.-- . ++ -.++..| +|........+|+
T Consensus 1061 ~LR~~i~-lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1061 WLRKQIG-LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred HHHHhcc-eeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHH
Confidence 2456777 6766642 22233332110 0 00 0111222 2333333344777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
++ ..+|+++||||-|+.+|+.. ..+....|+.+. .|.|+|+++|-+..+...
T Consensus 1140 Ai--lRnPkILLLDEATSALDseS-ErvVQeALd~a~--~gRT~IvIAHRLSTIqna 1191 (1228)
T KOG0055|consen 1140 AI--LRNPKILLLDEATSALDSES-ERVVQEALDRAM--EGRTTIVIAHRLSTIQNA 1191 (1228)
T ss_pred HH--HcCCCeeeeeccchhhhhhh-HHHHHHHHHHhh--cCCcEEEEecchhhhhcC
Confidence 77 89999999999966666444 344555555543 378999999998876643
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.72 E-value=1e-07 Score=121.64 Aligned_cols=67 Identities=24% Similarity=0.210 Sum_probs=49.0
Q ss_pred cchhhHHhHHHHHHHHhCCCC---cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 885 ESTFLVECTETASVLQKATQD---SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 885 ~Stf~~Em~ela~iL~~at~~---sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
+|..+.....++++| +.++ .|+|||||+.|+++.+...+. .++..+.++ |.++|++||+++++. .++
T Consensus 831 LSgGEkQRl~LAraL--~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~-G~TVIiitH~~~~i~-~aD 900 (943)
T PRK00349 831 LSGGEAQRVKLAKEL--SKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDK-GNTVVVIEHNLDVIK-TAD 900 (943)
T ss_pred CCHHHHHHHHHHHHH--hcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCHHHHH-hCC
Confidence 344444444566666 5666 899999999999988866544 456666654 889999999999875 454
No 415
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.71 E-value=3.4e-08 Score=113.26 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=90.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc-------ccccccc---cccch-----------------HHHHHHHcC
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLG-------CFVPCEM---CVLSL-----------------ADTIFTRLG 876 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG-------~~VPa~~---a~i~~-----------------~d~I~trig 876 (1085)
.|++++++||||-|||||.|++++..- .--| +|-|+-- ...++ ...|+..++
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhcccc-CCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 578999999999999999999988532 2222 2344310 11111 112333344
Q ss_pred Cccccccccchhh-HHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 877 ATDRIMTGESTFL-VECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 877 ~~D~i~~~~Stf~-~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
..+-+......++ +|++++|-++..+.+.+|.|||||.+-+|.......+ .++..++...+.+.+++-||.-+++.++
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEEecceehhhhhh
Confidence 4333333333333 5677777777668999999999998888877766544 5667777777899999999999988887
Q ss_pred Ccc
Q 040956 956 SHP 958 (1085)
Q Consensus 956 ~~~ 958 (1085)
++.
T Consensus 524 Dr~ 526 (591)
T COG1245 524 DRL 526 (591)
T ss_pred ceE
Confidence 753
No 416
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.66 E-value=9.7e-08 Score=127.06 Aligned_cols=72 Identities=21% Similarity=0.169 Sum_probs=52.6
Q ss_pred cchhhHHhHHHHHHHHh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 885 ESTFLVECTETASVLQK-ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 885 ~Stf~~Em~ela~iL~~-at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+|..+.....+|++|.. +.+|.|+|||||++|+|+.+...+ ..++..+.+. |.++|++||+++++ .++++..
T Consensus 810 LSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~L-l~lL~~L~~~-G~TVIiIsHdl~~i-~~aDrVi 882 (1809)
T PRK00635 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKAL-IYVLQSLTHQ-GHTVVIIEHNMHVV-KVADYVL 882 (1809)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEE
Confidence 44444445557777732 368999999999999998886554 4466667665 88999999999988 5666543
No 417
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.9e-08 Score=113.82 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=44.7
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|++| ...|.|+.|||| |+++|-.+..| |...++....|.|+++||..+++.+|+.
T Consensus 423 LARAL--flEPTLLMLDEP---TNHLDLNAVIW--LdNYLQgWkKTLLIVSHDQgFLD~VCtd 478 (807)
T KOG0066|consen 423 LARAL--FLEPTLLMLDEP---TNHLDLNAVIW--LDNYLQGWKKTLLIVSHDQGFLDSVCTD 478 (807)
T ss_pred HHHHH--hcCceeeeecCC---ccccccceeee--hhhHHhhhhheeEEEecccchHHHHHHH
Confidence 77777 789999999999 88888666565 4444455688999999999999887753
No 418
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.61 E-value=1.8e-07 Score=97.88 Aligned_cols=153 Identities=21% Similarity=0.220 Sum_probs=91.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh----hc----------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA----QL---------- 854 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila----qi---------- 854 (1085)
..|++.++++.|- ...++.-|++++.+ .|...+++|.||+|||||||++++-.+.. |.
T Consensus 12 ~aievsgl~f~y~----~~dP~~~Dfnldlp----~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK----VSDPIFFDFNLDLP----AGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTS 83 (291)
T ss_pred ceEEEeccEEecc----cCCceEEEEeeccC----CCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccc
Confidence 4699999999984 34589999999987 67899999999999999999996532110 00
Q ss_pred ----c--cccccc-------c------cccchHHHHHHHcCCc----c-----------ccccccchhhHHhHHHHHHHH
Q 040956 855 ----G--CFVPCE-------M------CVLSLADTIFTRLGAT----D-----------RIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 855 ----G--~~VPa~-------~------a~i~~~d~I~trig~~----D-----------~i~~~~Stf~~Em~ela~iL~ 900 (1085)
| +|+-.+ . ..++...-||.-=|.. + --+...|-......+++.-|
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGL- 162 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGL- 162 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhc-
Confidence 0 011000 0 1122222222211100 0 01223344444445555555
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH---HhcCceEEEEEechhHHHhhc
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV---ERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~---~~~~~tiL~aTH~~el~~~~~ 955 (1085)
..+-.++||||.+--+|..... .+|+.|. +..|||++.+||..+=.+...
T Consensus 163 -L~PfkVLLLDEVTVDLDVlARa----dLLeFlkeEce~RgatIVYATHIFDGLe~Wp 215 (291)
T KOG2355|consen 163 -LKPFKVLLLDEVTVDLDVLARA----DLLEFLKEECEQRGATIVYATHIFDGLETWP 215 (291)
T ss_pred -ccceeEEEeeeeEeehHHHHHH----HHHHHHHHHHhhcCcEEEEEeeeccchhhcc
Confidence 7888999999995444433322 3444444 346999999999865544443
No 419
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.59 E-value=4.8e-07 Score=105.38 Aligned_cols=135 Identities=24% Similarity=0.182 Sum_probs=83.3
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH---------hhccccccccc-cccc----------
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------AQLGCFVPCEM-CVLS---------- 866 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------aqiG~~VPa~~-a~i~---------- 866 (1085)
+..+.+.++|.++ +|..++||||||||||+|.|+++++--. .+--.|+|+.. +..+
T Consensus 494 ~~vvv~~Ltf~i~----~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPd 569 (728)
T KOG0064|consen 494 GDVLVPKLTFQIE----PGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPD 569 (728)
T ss_pred cceeecceeEEec----CCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCC
Confidence 4567788889887 7889999999999999999999886411 12223556532 1111
Q ss_pred ---------h-------------HHHHHHHcCCccccccc---cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 040956 867 ---------L-------------ADTIFTRLGATDRIMTG---ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFD 921 (1085)
Q Consensus 867 ---------~-------------~d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~D 921 (1085)
+ .+.|..|=|-.|-+... +|........+|++. -++|...+|||-++..+. |
T Consensus 570 S~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~--yHrPkyalLDEcTsAvsi-d 646 (728)
T KOG0064|consen 570 SSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF--YHRPKYALLDECTSAVSI-D 646 (728)
T ss_pred cHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH--hcCcchhhhhhhhccccc-c
Confidence 0 11133332322222222 222222223356666 899999999999777773 3
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 922 GYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 922 g~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
- -..+. ..++..|.+.|-+||-+.+-.
T Consensus 647 v---E~~i~-~~ak~~gi~llsithrpslwk 673 (728)
T KOG0064|consen 647 V---EGKIF-QAAKDAGISLLSITHRPSLWK 673 (728)
T ss_pred h---HHHHH-HHHHhcCceEEEeecCccHHH
Confidence 1 12233 345566999999999988765
No 420
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=7.1e-07 Score=116.18 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=108.6
Q ss_pred CCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------HHhhccccc
Q 040956 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------ILAQLGCFV 858 (1085)
Q Consensus 787 ~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------ilaqiG~~V 858 (1085)
+.+.++++++....- . .+..+.++||+|.++ +|+.++|+||-|||||+||.+|.+-. +-..+ +||
T Consensus 515 ~~~~i~i~~~sfsW~-~-~~~~~tL~dIn~~i~----~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsi-aYv 587 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWD-S-ESPEPTLKDINFEIK----KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSV-AYV 587 (1381)
T ss_pred CCceEEEeeeeEecC-C-CCCcccccceeEEec----CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeE-EEe
Confidence 346799999987752 2 134569999999998 89999999999999999999985522 11122 388
Q ss_pred ccccc--ccchHHH--------------HH---------HHcCCcccccc-----ccchhhHHhHHHHHHHHhCCCCcEE
Q 040956 859 PCEMC--VLSLADT--------------IF---------TRLGATDRIMT-----GESTFLVECTETASVLQKATQDSLV 908 (1085)
Q Consensus 859 Pa~~a--~i~~~d~--------------I~---------trig~~D~i~~-----~~Stf~~Em~ela~iL~~at~~sLv 908 (1085)
|+..- .-++-|+ +. ..+...|.-.- .+|........+|+++ -.+.+++
T Consensus 588 ~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV--Y~~adIY 665 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV--YQDADIY 665 (1381)
T ss_pred ccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH--hccCCEE
Confidence 87641 1122222 21 12222332221 1333333344577777 7899999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
|||.|++..|..-|..|...++..+++ +.|+|++||..++....+
T Consensus 666 LLDDplSAVDahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~~ad 710 (1381)
T KOG0054|consen 666 LLDDPLSAVDAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLPHAD 710 (1381)
T ss_pred EEcCcchhhhHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhhhCC
Confidence 999999999988898888888866654 689999999888776544
No 421
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.49 E-value=4.6e-07 Score=93.82 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=45.5
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
++-+.+..+..-+.|||||-+|+|+.-..++. ++|..|.+. |.-+|++||-+-|+.
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~s-GaQ~IiATHSPiLlA 192 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADS-GAQIIIATHSPILLA 192 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhc-CCeEEEEecChhhee
Confidence 44455567889999999999999999877754 578888875 899999999986643
No 422
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.47 E-value=7.6e-07 Score=105.14 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=96.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------h----hccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------A----QLGC 856 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------a----qiG~ 856 (1085)
+.|+++++. +.... ++..+..+++|.+. .|+.++||||||+|||+|||.+|++--. + .--.
T Consensus 432 n~i~~e~v~--l~tPt-~g~~lie~Ls~~V~----~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lf 504 (659)
T KOG0060|consen 432 NAIEFEEVS--LSTPT-NGDLLIENLSLEVP----SGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLF 504 (659)
T ss_pred ceEEeeeee--ecCCC-CCceeeeeeeeEec----CCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceE
Confidence 578887653 32222 25677788999997 7899999999999999999999875321 1 1124
Q ss_pred cccccc-cccc-------------------h-------------HHHHHHHcCCcc--ccccccchhh-HHhHHHHHHHH
Q 040956 857 FVPCEM-CVLS-------------------L-------------ADTIFTRLGATD--RIMTGESTFL-VECTETASVLQ 900 (1085)
Q Consensus 857 ~VPa~~-a~i~-------------------~-------------~d~I~trig~~D--~i~~~~Stf~-~Em~ela~iL~ 900 (1085)
|||+.. +..+ . ...|..|.|-.| ......++.+ +|+++++.+--
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARL 584 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARL 584 (659)
T ss_pred EecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHH
Confidence 677643 1111 0 112455555444 3333333443 46666555443
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
.-++|.+.||||-|+..+ .|- ...+-...++.|.|.|=+.|-..|.+
T Consensus 585 fy~kPk~AiLDE~TSAv~-~dv----E~~~Yr~~r~~giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 585 FYHKPKFAILDECTSAVT-EDV----EGALYRKCREMGITFISVGHRKSLWK 631 (659)
T ss_pred HhcCCceEEeechhhhcc-HHH----HHHHHHHHHHcCCeEEEeccHHHHHh
Confidence 389999999999966665 222 22233334456999999999888765
No 423
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.47 E-value=9.8e-07 Score=90.88 Aligned_cols=165 Identities=17% Similarity=0.151 Sum_probs=100.0
Q ss_pred CEEEEEcceeeeeecC--CC--CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh-----------h
Q 040956 789 PVLKIKGLWHPFALGE--NG--GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA-----------Q 853 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~--~~--~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila-----------q 853 (1085)
+.++++|+.+.|.... -+ ..-..+.++|+.+ .|+.++|+|.||||||||.|++++++-.. +
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~----~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~ 78 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLR----EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH 78 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEec----CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccc
Confidence 3456666666553211 00 1224556778776 68999999999999999999998865110 0
Q ss_pred ccc---------cccccc-c--------------------ccch---HHHHHH---HcCCc-cccc---cccchhhHHhH
Q 040956 854 LGC---------FVPCEM-C--------------------VLSL---ADTIFT---RLGAT-DRIM---TGESTFLVECT 893 (1085)
Q Consensus 854 iG~---------~VPa~~-a--------------------~i~~---~d~I~t---rig~~-D~i~---~~~Stf~~Em~ 893 (1085)
.|- .+.++. . .+.. ..+||. ++|.. |... .-+++......
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 110 111110 0 0000 112332 34432 2211 22333344445
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.+|++| .-.|+++|.||...++|..-...+..-++ +|.++.|...|.+|.+...++.+++..-|
T Consensus 159 aLARAL--IL~P~iIIaDeAl~~LD~smrsQl~NL~L-eLQek~GiSyiYV~QhlG~iKHi~D~viV 222 (267)
T COG4167 159 ALARAL--ILRPKIIIADEALASLDMSMRSQLINLML-ELQEKQGISYIYVTQHIGMIKHISDQVLV 222 (267)
T ss_pred HHHHHH--hcCCcEEEehhhhhhccHHHHHHHHHHHH-HHHHHhCceEEEEechhhHhhhhcccEEE
Confidence 577777 88999999999988877655555554444 56777899999999999999988875433
No 424
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.42 E-value=1.4e-06 Score=103.31 Aligned_cols=156 Identities=24% Similarity=0.225 Sum_probs=107.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
+.++++++.++- ..+|++|++. +|++++|.|-=|+|+|-+++.+.++.
T Consensus 262 ~~l~v~~l~~~~---------~~~dvSf~vr----~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 262 PVLEVRNLSGGG---------KVRDVSFTVR----AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSP 328 (500)
T ss_pred cEEEEecCCCCC---------ceeCceeEEe----CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCH
Confidence 788898876541 4578889887 89999999999999999999996622
Q ss_pred ---HHhhccccccccccccc------hHHHH--------------------------HHHcCC-ccccccccchhhHHhH
Q 040956 850 ---ILAQLGCFVPCEMCVLS------LADTI--------------------------FTRLGA-TDRIMTGESTFLVECT 893 (1085)
Q Consensus 850 ---ilaqiG~~VPa~~a~i~------~~d~I--------------------------~trig~-~D~i~~~~Stf~~Em~ 893 (1085)
+-+-+| |||.+...-+ +.++| ..+++. ..+.....++++++=+
T Consensus 329 ~~Ai~~Gi~-~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQ 407 (500)
T COG1129 329 RDAIKAGIA-YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQ 407 (500)
T ss_pred HHHHHcCCE-eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhh
Confidence 222344 7887643222 11111 111111 0111122333443333
Q ss_pred H---HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 894 E---TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 894 e---la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+ +++-| +++|+++||||||||.|.-.... .+.++..|+.+ |..+|++|-+++.+-.++++..|..
T Consensus 408 QKVvlarwL--~~~p~vLilDEPTRGIDVGAK~e-Iy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~ 475 (500)
T COG1129 408 QKVVLARWL--ATDPKVLILDEPTRGIDVGAKAE-IYRLIRELAAE-GKAILMISSELPELLGLSDRILVMR 475 (500)
T ss_pred hhHHHHHHH--hcCCCEEEECCCCcCcccchHHH-HHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEE
Confidence 2 77777 89999999999999999665444 66788889887 9999999999988888888876654
No 425
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=1.9e-06 Score=96.59 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|+++|+|||++|+++.....+.. ++..+.. ++++|++||++.+.. ++++
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~-~l~~~~~--~~tii~isH~~~~~~-~~d~ 241 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGK-KLKELSR--SHQVLCITHLPQVAA-MADN 241 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHhC--CCEEEEEechHHHHH-hcCc
Confidence 999999999999999777554444 3444432 679999999998754 4443
No 426
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.38 E-value=1.2e-06 Score=91.93 Aligned_cols=164 Identities=20% Similarity=0.206 Sum_probs=99.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.++|+|+.--+. ...|..-+...++|+.+ .|++-+|+|.+|+|||-.-|.|+++.-
T Consensus 3 LLDIrnL~IE~~-TsqG~vK~VD~v~ltln----EGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~ 77 (330)
T COG4170 3 LLDIRNLTIEFK-TSQGWVKAVDRVSMTLN----EGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLR 77 (330)
T ss_pred cccccceEEEEe-cCCCceEeeeeeeeeec----cceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhc
Confidence 344544443332 12234456778888887 789999999999999999999987541
Q ss_pred ---------Hhhcccccccc---------c-------------cc------cchH----HHHHHHcCCccccccccchhh
Q 040956 851 ---------LAQLGCFVPCE---------M-------------CV------LSLA----DTIFTRLGATDRIMTGESTFL 889 (1085)
Q Consensus 851 ---------laqiG~~VPa~---------~-------------a~------i~~~----d~I~trig~~D~i~~~~Stf~ 889 (1085)
.++--+.+.++ . .. +++- =.++-++|..|.-. -.+++-
T Consensus 78 L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD-IM~SYP 156 (330)
T COG4170 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD-IMRSYP 156 (330)
T ss_pred CChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH-HHHhCc
Confidence 11111111111 0 00 0000 01455666544321 112222
Q ss_pred HHh-----HH--HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 890 VEC-----TE--TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 890 ~Em-----~e--la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
.|+ +. +|.++ |..|.|+|.|||+....+.....|. .+|..+.+..|.++|+++||...+...++...|..
T Consensus 157 ~ElTeGE~QKVMIA~A~--AnqPrLLIADEPTN~~e~~Tq~Qif-RLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY 233 (330)
T COG4170 157 YELTEGECQKVMIAIAL--ANQPRLLIADEPTNSMEPTTQAQIF-RLLSRLNQNSNTTILLISHDLQMISQWADKINVLY 233 (330)
T ss_pred chhccCcceeeeeehhh--ccCCceEeccCCCcccCccHHHHHH-HHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence 222 22 45555 8999999999997776666554433 45556666668899999999999999998877654
No 427
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.37 E-value=2.7e-06 Score=110.99 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=104.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+.-.|-. +...|+++++|.+. +|+.++|+|.-|||||||+.++--++
T Consensus 1138 ~I~f~~~~~RYrp---~lp~VLk~is~~I~----p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRP---NLPLVLKGISFTIK----PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210 (1381)
T ss_pred eEEEEEeEEEeCC---CCcchhcCceEEEc----CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHH
Confidence 5999999988842 24699999999998 78999999999999999998773222
Q ss_pred -HHhhcccccccccc--------ccchHHH-----HH---HHc-----------CCccccccccchhhHHhHH---HHHH
Q 040956 850 -ILAQLGCFVPCEMC--------VLSLADT-----IF---TRL-----------GATDRIMTGESTFLVECTE---TASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a--------~i~~~d~-----I~---tri-----------g~~D~i~~~~Stf~~Em~e---la~i 898 (1085)
+..+++ .+|++.. .+.++++ |. .+. |..-.+..|-+.|+++..+ +|++
T Consensus 1211 dLRsrls-IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1211 DLRSRLS-IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred HHHhcCe-eeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHH
Confidence 334455 6888752 2333332 22 111 2333445566677777666 6777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
| ..+..+++|||.|+..|+.. -++.++.+..-- .+||+|.+-|-..-+..
T Consensus 1290 L--Lr~skILvLDEATAsVD~~T-D~lIQ~tIR~~F--~dcTVltIAHRl~TVmd 1339 (1381)
T KOG0054|consen 1290 L--LRKSKILVLDEATASVDPET-DALIQKTIREEF--KDCTVLTIAHRLNTVMD 1339 (1381)
T ss_pred H--hccCCEEEEecccccCChHH-HHHHHHHHHHHh--cCCeEEEEeeccchhhh
Confidence 7 89999999999988877654 233444443322 37999999999776554
No 428
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.37 E-value=3.8e-07 Score=116.26 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=91.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
.+...+|+..-.... .+...+++||+=-.. +|-..+|+|++||||||||+.+++=..
T Consensus 786 ~V~~w~dl~~~~~~q-G~~~qLL~~V~G~~k----PG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~ 860 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQ-GGTRQLLNNVSGAFK----PGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQE 860 (1391)
T ss_pred ceEEEEeCCcccccc-ccceEhhhcCceEec----CCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchh
Confidence 345555554333221 245678888875444 688999999999999999999965321
Q ss_pred -Hhh-ccccccccccc---c------------------------chHHHHHHHcCCc---cccccc-cchhhHHhHH-HH
Q 040956 851 -LAQ-LGCFVPCEMCV---L------------------------SLADTIFTRLGAT---DRIMTG-ESTFLVECTE-TA 896 (1085)
Q Consensus 851 -laq-iG~~VPa~~a~---i------------------------~~~d~I~trig~~---D~i~~~-~Stf~~Em~e-la 896 (1085)
.+. +| ||-+.... + ..++.+..-++.. |.+... -+....|.+. +.
T Consensus 861 tF~R~~G-YvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 861 TFARVSG-YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hhccccc-eeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceee
Confidence 122 33 55543311 1 1334444444432 222211 0222333222 22
Q ss_pred HHHHhCCCC-cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 897 SVLQKATQD-SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 897 ~iL~~at~~-sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
-....+.+| +||+||||++|+|...+ ++...+++.|+.. |.+||.+=|.+..
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA-~~i~~~lrkla~t-GqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAA-AIVMRFLRKLADT-GQTILCTIHQPSI 992 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHH-HHHHHHHHHHHhc-CCeEEEEecCCcH
Confidence 222225666 99999999999997664 4455577888875 8899999998753
No 429
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.2e-06 Score=94.60 Aligned_cols=149 Identities=20% Similarity=0.218 Sum_probs=93.2
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh--------HH------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL--------AV------------ 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~--------i~------------ 849 (1085)
.+.+.+....|. +..+++++++|.+. .|..++|+||.|+||||++|.+-- +.
T Consensus 262 ~v~F~~V~F~y~----~~r~iL~~isf~i~----~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~ 333 (497)
T COG5265 262 AVAFINVSFAYD----PRRPILNGISFTIP----LGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQ 333 (497)
T ss_pred eEEEEEEEeecc----ccchhhcCcccccc----CccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHH
Confidence 467777776663 56899999999987 789999999999999999998821 11
Q ss_pred -HHhhccccccccccccchHHH-----------------------HHHHcC-Cccc--cc---cc--cchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVLSLADT-----------------------IFTRLG-ATDR--IM---TG--ESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i~~~d~-----------------------I~trig-~~D~--i~---~~--~Stf~~Em~ela~ 897 (1085)
+-.-|| .||++..-+.-.+. |...+. .++- .. .| +|........+|+
T Consensus 334 slR~aIg-~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 334 SLRRAIG-IVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred HHHHHhC-cCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 223466 78886532211110 111110 0000 00 11 1222222333666
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
.+ ..+|+++++||.++.+|+....+|- +-+..+. .|.|+|++.|-+.-+.
T Consensus 413 ~i--lk~p~il~~deatsaldt~te~~iq-~~l~~~~--~~rttlviahrlsti~ 462 (497)
T COG5265 413 TI--LKNPPILILDEATSALDTHTEQAIQ-AALREVS--AGRTTLVIAHRLSTII 462 (497)
T ss_pred HH--hcCCCEEEEehhhhHhhhhHHHHHH-HHHHHHh--CCCeEEEEeehhhhcc
Confidence 66 8999999999997777776655443 3444443 3789999999876543
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.22 E-value=2.5e-06 Score=95.28 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=58.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHhhccc-cccccccccchHH---HHHHHcC-Cccc-------cccccchhhHHhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGC-FVPCEMCVLSLAD---TIFTRLG-ATDR-------IMTGESTFLVECT 893 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~-~VPa~~a~i~~~d---~I~trig-~~D~-------i~~~~Stf~~Em~ 893 (1085)
..++|.||||+|||||+|.+++..- ...|. .+.. ..+..+| .+...++ ..+. ...+... ...|.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g--~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~~~~ 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGLRG--KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AEGMM 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEECC--EEeecchhHHHHHHHhcccccccccccccccccchH-HHHHH
Confidence 4689999999999999999987532 11221 1111 1122221 1211111 1111 1111101 11222
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
.+.+ +.+|+++|+|||++. . ...++++.+. .|.++|++||+..+.+
T Consensus 188 ~~i~----~~~P~villDE~~~~---e----~~~~l~~~~~--~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 188 MLIR----SMSPDVIVVDEIGRE---E----DVEALLEALH--AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHH----hCCCCEEEEeCCCcH---H----HHHHHHHHHh--CCCEEEEEechhHHHH
Confidence 2222 468999999999532 2 2445555543 3899999999876644
No 431
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.10 E-value=1.5e-05 Score=87.12 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=61.9
Q ss_pred CCCEEEEEeCCCCCcchHH-hhhhhHHHHhhccccccccccccchHHHHHHHcCCcc-------ccc-----cccchhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLL-RATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATD-------RIM-----TGESTFLV 890 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLL-R~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D-------~i~-----~~~Stf~~ 890 (1085)
+|++++|+||||+|||||. +.++...--..-+.|+..+...-.+...+ ..+|..- .+. ...+....
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 5789999999999999995 55544332233344555443222222222 2333211 100 00111110
Q ss_pred HhHHHHHHHHhC--CCCcEEEEeCCCCCCChH-HH--HHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 891 ECTETASVLQKA--TQDSLVILDELGRGTSTF-DG--YAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 891 Em~ela~iL~~a--t~~sLvLLDEpgrGTs~~-Dg--~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
.-..+..++... .+++++++|||+.+.... |. ......++..+.+. +++ +++||+...
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~t-vi~t~~~~~ 164 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKV-IILTANPKE 164 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCE-EEEEecccc
Confidence 011233344332 479999999998776221 21 12233455555444 674 555666544
No 432
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.08 E-value=1e-05 Score=108.44 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=45.2
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 895 TASVLQKA-TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 895 la~iL~~a-t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+|..|..- +.+.|+|||||+.|+.+.|-..+. .+++.|.+. |.|+|++.|+++++..
T Consensus 1710 La~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~-g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635 1710 IAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSL-GHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred HHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc-CCeEEEEeCCHHHHHh
Confidence 55555322 347999999999999999966544 567888876 9999999999999876
No 433
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.08 E-value=1.7e-05 Score=85.58 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=32.1
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
...+..++||||+..++|..-...++. ++..+.+ ++-+|++||...+......
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~--~~Q~ii~Th~~~~~~~a~~ 207 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK--QSQFIITTHNPEMFEDADK 207 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT--TSEEEEE-S-HHHHTT-SE
T ss_pred ccccccccccccccccccccccccccc-ccccccc--ccccccccccccccccccc
Confidence 346889999999988888666444333 3333322 4779999999988776543
No 434
>PRK13695 putative NTPase; Provisional
Probab=98.03 E-value=1.5e-05 Score=83.01 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=35.2
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH---HHhhcCcccee
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL---TKEFASHPHVT 961 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el---~~~~~~~~~V~ 961 (1085)
..++.++|+||++ .++..+. . ....+..+.+ .+.++|+++|+... ++.+..++.+.
T Consensus 94 l~~~~~lllDE~~-~~e~~~~-~-~~~~l~~~~~-~~~~~i~v~h~~~~~~~~~~i~~~~~~~ 152 (174)
T PRK13695 94 LEEADVIIIDEIG-KMELKSP-K-FVKAVEEVLD-SEKPVIATLHRRSVHPFVQEIKSRPGGR 152 (174)
T ss_pred cCCCCEEEEECCC-cchhhhH-H-HHHHHHHHHh-CCCeEEEEECchhhHHHHHHHhccCCcE
Confidence 4689999999974 2444442 2 2345555665 48899999998643 34444444443
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.01 E-value=1.5e-05 Score=97.64 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=42.7
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++.+.|.|||||+.|+-..|-.. ...+|+.|... |-|+|++.|+++.++.
T Consensus 841 ~tg~TlYiLDEPTTGLH~~Di~k-Ll~VL~rLvd~-GnTViVIEHNLdVIk~ 890 (935)
T COG0178 841 STGKTLYILDEPTTGLHFDDIKK-LLEVLHRLVDK-GNTVIVIEHNLDVIKT 890 (935)
T ss_pred cCCCeEEEeCCCCCCCCHHHHHH-HHHHHHHHHhC-CCEEEEEecccceEee
Confidence 57889999999999999999554 45688899886 8999999999988653
No 436
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=4.1e-05 Score=85.65 Aligned_cols=64 Identities=13% Similarity=-0.019 Sum_probs=39.5
Q ss_pred chhhHHhHHHHHHHH-------hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 886 STFLVECTETASVLQ-------KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 886 Stf~~Em~ela~iL~-------~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
|..+..+..++..|. ...++.++|+|||++++|+.... .+++.+.+. + .++++||+...+..++
T Consensus 185 S~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~----~l~~~l~~~-~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 185 SQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQA----ALLDAIEGR-V-QTFVTTTDLADFDALW 255 (270)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHH----HHHHHhhcC-C-CEEEEeCCchhccchh
Confidence 444444445565552 23688999999998888876643 345554432 3 4677777766555443
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.94 E-value=1.9e-05 Score=84.05 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHhCCCC-cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 895 TASVLQKATQD-SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 895 la~iL~~at~~-sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
+...+..+... .++++|||-.++.|.-...++ .++..+.+ .+.-+|++||.+.++
T Consensus 247 l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 247 LLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp HHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGG-GSSEEEEEES-GGG-
T ss_pred HHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCc-cCCEEEEeCccchhc
Confidence 34444334444 999999999999987654444 33333333 367899999998775
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.90 E-value=3.9e-05 Score=77.16 Aligned_cols=122 Identities=21% Similarity=0.266 Sum_probs=62.5
Q ss_pred EEEEeCCCCCcchHHhhhhhHHHHhhcc--ccccccccccchHHHH--HHHcCCccccc--cccc-hh-hHHhHHHHHHH
Q 040956 828 LLLTGPNMGGKSTLLRATCLAVILAQLG--CFVPCEMCVLSLADTI--FTRLGATDRIM--TGES-TF-LVECTETASVL 899 (1085)
Q Consensus 828 ~iItGpNgsGKSTLLR~i~~i~ilaqiG--~~VPa~~a~i~~~d~I--~trig~~D~i~--~~~S-tf-~~Em~ela~iL 899 (1085)
++|+||||+||||+++.++....- +-+ .|+..+.......... +...+..++.. .... .. ..........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 689999999999999999775432 212 2333332222221111 11111111111 1111 11 11122333444
Q ss_pred HhCCCCcEEEEeCCCCCCChH---------HHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 900 QKATQDSLVILDELGRGTSTF---------DGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~---------Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
....++.++|+||+..-.... ........+++.+ ++.++++|+++|...-.
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCcc
Confidence 446789999999996322211 1123334444443 33589999999987643
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.85 E-value=5.9e-05 Score=78.75 Aligned_cols=120 Identities=15% Similarity=0.065 Sum_probs=64.8
Q ss_pred EEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCccc----------cccccchhhHHh----
Q 040956 828 LLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGATDR----------IMTGESTFLVEC---- 892 (1085)
Q Consensus 828 ~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~D~----------i~~~~Stf~~Em---- 892 (1085)
++|+||.|+|||||.-+++.-.... .-.+|+..+...-.+. +.+.++|..-. .......+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~-~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI-ENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH-HHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 6899999999999998886643322 2233443332211111 22233332211 001111111111
Q ss_pred ----HHHHHHHHhCCCCcEEEEeCCCCCCCh--HHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 893 ----TETASVLQKATQDSLVILDELGRGTST--FDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 893 ----~ela~iL~~at~~sLvLLDEpgrGTs~--~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
..+...+ ...+++++++|||+..++. .+.......++..+.+. |+++|+++|....
T Consensus 81 ~~~~~~i~~~~-~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~ 142 (187)
T cd01124 81 LELIQRLKDAI-EEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEeccccC
Confidence 1222222 1358999999999877662 22223344566666654 8999999998775
No 440
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.85 E-value=0.0001 Score=71.15 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.9
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+..++|+||+|+||||+++.++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 4689999999999999999997643
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.78 E-value=0.00011 Score=80.23 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH-hhccccccccccccchHHHHHHHcCC--ccccccccc-----------hhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL-AQLGCFVPCEMCVLSLADTIFTRLGA--TDRIMTGES-----------TFL 889 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il-aqiG~~VPa~~a~i~~~d~I~trig~--~D~i~~~~S-----------tf~ 889 (1085)
+|.+++|+|++|+|||||..+++.-.+. ..-+.|+-.+.....+..+ +..+|. .+.+..+.. ...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 102 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEWNS 102 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccccCc
Confidence 6789999999999999999998643322 3344566554433233222 233332 111111111 111
Q ss_pred HHhHHHHHHHHh---CCCCcEEEEeCCCCCCChHHHHHHHHHH---HHHHHHhcCceEEEEEechhH
Q 040956 890 VECTETASVLQK---ATQDSLVILDELGRGTSTFDGYAIAYAV---FRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 890 ~Em~ela~iL~~---at~~sLvLLDEpgrGTs~~Dg~aia~av---le~L~~~~~~tiL~aTH~~el 950 (1085)
..+.++...+.. ..+++++++|||+...+..+... ...+ +..+.+ .++++|+++|....
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~-~~~~l~~l~~l~~-~g~tvllt~~~~~~ 167 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDD-ILNFLTEAKNLVD-LGKTILITLHPYAF 167 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHH-HHHHHHHHHHHHh-CCCEEEEEecCCcC
Confidence 122222222221 25899999999974433222222 2233 333344 38899999997654
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.64 E-value=0.00014 Score=77.71 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=55.7
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc-cccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCC
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~-a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~ 905 (1085)
+++|+||+||||||+++.+........-|..+--+. ..+. .......+. ...+.....+|.. .+..+| ..+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~---~i~~aL--r~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFEN---ALKAAL--RQDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHH---HHHHHh--cCCc
Confidence 789999999999999998754321111121111110 0000 000000000 0001111122221 244445 4689
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
+++++||+ .+... +..+++. .. .|..++.++|......
T Consensus 76 d~ii~gEi---rd~e~----~~~~l~~-a~-~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEM---RDLET----IRLALTA-AE-TGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCC---CCHHH----HHHHHHH-HH-cCCEEEEEecCCcHHH
Confidence 99999999 44332 3444543 33 4888999999876554
No 443
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=97.57 E-value=4.6e-06 Score=101.10 Aligned_cols=217 Identities=9% Similarity=-0.129 Sum_probs=150.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc-cccch
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSL 867 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~-a~i~~ 867 (1085)
|.++. +-+|||+.+...-.+.++++.+-.. +..---.||++++|++|||++||..+.+++.++.|++.- ++.+.
T Consensus 623 p~lE~-Qd~~~fIpNdv~le~~~~~~~IiTG----pNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA 697 (902)
T KOG0219|consen 623 PVLEG-QDEIPFIPNDVVLEKGKCRMLIITG----PNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGA 697 (902)
T ss_pred chhhc-cccCCCCCCccccccCCceEEEEeC----CCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhcc
Confidence 44443 3378998665444566777776433 233356899999999999999999999999999998753 23333
Q ss_pred HHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 868 ADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 868 ~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
-|..+ +-+..+-.....++++.++..-..++.-....+....+|-|+++.+.++.-+++.....|.....+-+.+.+|+
T Consensus 698 ~D~q~-kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~ 776 (902)
T KOG0219|consen 698 GDSQL-KGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQ 776 (902)
T ss_pred chhhh-cchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhh
Confidence 33222 22233444556677777777766666556788899999999999999988888887777777667888899999
Q ss_pred hhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 040956 948 HPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKKS 1026 (1085)
Q Consensus 948 ~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~~ 1026 (1085)
+..++.+.--..+.+-.... +.-.|.-..|.+-..++.++|.....+.++.+.+.+.+++++..
T Consensus 777 ~~~vKn~h~~a~i~~~~~~l---------------lY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 777 LPTVKNLHVTAQIENDDITL---------------LYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred hhhhhhheeeeEecCcchhh---------------HHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 98887543322333211111 11223445567788899999999998888888877766666544
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.48 E-value=0.00027 Score=80.72 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=57.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHH-HcCCccc--cccc---cchhhHHhHH-HH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFT-RLGATDR--IMTG---ESTFLVECTE-TA 896 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~t-rig~~D~--i~~~---~Stf~~Em~e-la 896 (1085)
.+..++|+||+||||||||+.++.. +|.....+.+-| ... .+..... +... .......+.+ +.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~---------~~~~~~iv~ied-~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 212 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDE---------IPKDERIITIED-TREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQ 212 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc---------CCccccEEEEcC-ccccCCCCCCEEEEEecCCCCCcCccCHHHHHH
Confidence 4679999999999999999988652 232221111111 000 0000000 0000 0000111222 33
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCc-eEEEEEechhHHHh
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINC-RLLFATHYHPLTKE 953 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~-tiL~aTH~~el~~~ 953 (1085)
..| ..+|+++++|||. + .+ ++++++.+.. |. .+|.++|.......
T Consensus 213 ~~L--r~~pd~ii~gE~r---~-~e----~~~~l~a~~~--g~~~~i~T~Ha~~~~~~ 258 (308)
T TIGR02788 213 SCL--RMRPDRIILGELR---G-DE----AFDFIRAVNT--GHPGSITTLHAGSPEEA 258 (308)
T ss_pred HHh--cCCCCeEEEeccC---C-HH----HHHHHHHHhc--CCCeEEEEEeCCCHHHH
Confidence 344 5789999999994 3 22 3456666653 54 45899999875543
No 445
>PRK09183 transposase/IS protein; Provisional
Probab=97.47 E-value=0.00034 Score=77.93 Aligned_cols=104 Identities=20% Similarity=0.337 Sum_probs=58.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc-ccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHh-
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLG-CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK- 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG-~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~- 901 (1085)
.|+.++|+||+|+|||+|+..+|......... .|+.+. .++..+..... .+ .+..++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~--------~l~~~l~~a~~--~~---------~~~~~~~~~ 161 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA--------DLLLQLSTAQR--QG---------RYKTTLQRG 161 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH--------HHHHHHHHHHH--CC---------cHHHHHHHH
Confidence 46789999999999999999997654432111 122211 12211110000 00 12233322
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
...++++++||++...-..++..+...++....++ ..+||+|+..
T Consensus 162 ~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~--~s~iiTsn~~ 206 (259)
T PRK09183 162 VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK--GSMILTSNLP 206 (259)
T ss_pred hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhc--CcEEEecCCC
Confidence 46789999999986544344444555666654443 3577887763
No 446
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.41 E-value=0.00055 Score=66.78 Aligned_cols=25 Identities=48% Similarity=0.693 Sum_probs=22.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+..++|+||.|+||||+++.++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997654
No 447
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.40 E-value=0.0015 Score=77.13 Aligned_cols=162 Identities=21% Similarity=0.163 Sum_probs=106.1
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH----------------
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------------- 851 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------------- 851 (1085)
.+++++++++-+- ..+.....|++|++. .|++++|.|-.|-|-+.|+-.|+++.-.
T Consensus 255 ~~vL~V~~L~v~~----~~~~~~v~~vs~~Vr----~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~ 326 (501)
T COG3845 255 EVVLEVEDLSVKD----RRGVTAVKDVSFEVR----AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL 326 (501)
T ss_pred CeEEEEeeeEeec----CCCCceeeeeeeEEe----cCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC
Confidence 4799999988654 123467789999997 7999999999999999999999776411
Q ss_pred -------hhccccccccc------cccchHHHH-HHHcCCccccccc------cchhhHHhHH-----------------
Q 040956 852 -------AQLGCFVPCEM------CVLSLADTI-FTRLGATDRIMTG------ESTFLVECTE----------------- 894 (1085)
Q Consensus 852 -------aqiG~~VPa~~------a~i~~~d~I-~trig~~D~i~~~------~Stf~~Em~e----------------- 894 (1085)
.-+| |||.+. ..+++.+++ +.+.....-...+ ...|..++.+
T Consensus 327 ~~~~~r~~G~~-~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LS 405 (501)
T COG3845 327 SPRERRRLGLA-YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLS 405 (501)
T ss_pred CHHHHHhcCCc-cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcC
Confidence 1123 777764 233444442 2222110000000 1112222211
Q ss_pred --------HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 895 --------TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 895 --------la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+++=| ..+|+|+|+.+||||.|.-....|...+++ +.+. |+.+|+++-+++.+-.++++..|.+
T Consensus 406 GGNqQK~IlaREl--~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~-G~AVLLiS~dLDEil~lsDrIaVi~ 477 (501)
T COG3845 406 GGNQQKLILAREL--ARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDA-GKAVLLISEDLDEILELSDRIAVIY 477 (501)
T ss_pred Ccceehhhhhhhh--ccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhc-CCEEEEEehhHHHHHHhhheeeeee
Confidence 33333 689999999999999996655554444444 4444 8999999999999999998877654
No 448
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.00045 Score=80.51 Aligned_cols=85 Identities=14% Similarity=0.235 Sum_probs=56.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh----hccccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA----QLGCFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETA 896 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila----qiG~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela 896 (1085)
+|.+++|+||||+||||++..++...... .++ ++..+..+++-.+++-+ .+|..-...... .++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~-------~~l~ 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG-------GDLQ 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCc-------ccHH
Confidence 46799999999999999999998754433 234 67777777766666533 344322211111 1234
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 040956 897 SVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrG 916 (1085)
..+....+.++||+|++|+.
T Consensus 208 ~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 LALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHhcCCCEEEEcCCCCC
Confidence 45656678899999999755
No 449
>PRK04296 thymidine kinase; Provisional
Probab=97.32 E-value=0.0011 Score=70.41 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=58.9
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhcccc--ccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHH-h
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF--VPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ-K 901 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~--VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~-~ 901 (1085)
|.+.+||||.|+||||++..++.-...+..-++ -|.-..+.. ...+.+++|..-... .. ....++...+. .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~~-~~----~~~~~~~~~~~~~ 75 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREAI-PV----SSDTDIFELIEEE 75 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccce-Ee----CChHHHHHHHHhh
Confidence 568999999999999999887654333221111 122111111 223455555311100 00 11112222221 2
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
..+.++|++||... ++... ...+++.+.. .|.++|++.++.
T Consensus 76 ~~~~dvviIDEaq~----l~~~~-v~~l~~~l~~-~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQF----LDKEQ-VVQLAEVLDD-LGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEcccc----CCHHH-HHHHHHHHHH-cCCeEEEEecCc
Confidence 34679999999832 21111 2346666655 489999999993
No 450
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.32 E-value=0.00034 Score=80.55 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=81.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccc--------cccccc---cccc----hHHHHH-------------HHcC
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--------FVPCEM---CVLS----LADTIF-------------TRLG 876 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--------~VPa~~---a~i~----~~d~I~-------------trig 876 (1085)
.++++.+|.||-|||||+|++++.. -...|. |-|+.- ...+ +.+.|. .-+.
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~-~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ 445 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRL-KPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ 445 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCC-CCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh
Confidence 3689999999999999999998731 111121 222211 0001 111111 1111
Q ss_pred Cccccccccchh-hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 877 ATDRIMTGESTF-LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 877 ~~D~i~~~~Stf-~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
..+-+....-+. .+|++++|.+|-.-.+.++.++|||..=.|...... |..++..+.=+.+.|.+++.||.-.+..++
T Consensus 446 ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~-AskvikRfilhakktafvVEhdfImaTYla 524 (592)
T KOG0063|consen 446 IENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRII-ASKVIKRFILHAKKTAFVVEHDFIMATYLA 524 (592)
T ss_pred HHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHH-HHHHHHHHHHhccchhhhhhhHHHHHHhhc
Confidence 111111122222 257888888886678999999999988888766554 444555555445788999999988887777
Q ss_pred Ccc
Q 040956 956 SHP 958 (1085)
Q Consensus 956 ~~~ 958 (1085)
++.
T Consensus 525 drv 527 (592)
T KOG0063|consen 525 DRV 527 (592)
T ss_pred cee
Confidence 753
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.25 E-value=0.00014 Score=70.13 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=30.5
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhh
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
..++++++|.+. +|++++|+||+|+|||||++++.
T Consensus 2 ~~aL~~vsl~i~----~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVY----GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEc----CCEEEEEEcCCCCCHHHHHHHhh
Confidence 356788899887 68999999999999999999974
No 452
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.25 E-value=0.00056 Score=88.31 Aligned_cols=142 Identities=21% Similarity=0.253 Sum_probs=97.0
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------Hh-hccccccccc-----
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------LA-QLGCFVPCEM----- 862 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------la-qiG~~VPa~~----- 862 (1085)
..+.+|++.-++ +|+.+++.||.|+||||||+.+++..- +. ..-.|.++..
T Consensus 128 ~~il~~~sg~~~----pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 128 IQILKDISGIIK----PGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred ceeecCcceeEc----CCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce
Confidence 367888888776 799999999999999999999976330 00 0001222211
Q ss_pred ------------cc-----------cc----hHHHHHHHcCC--------ccccccccchhhHHhHHHHHHHHhCCCCcE
Q 040956 863 ------------CV-----------LS----LADTIFTRLGA--------TDRIMTGESTFLVECTETASVLQKATQDSL 907 (1085)
Q Consensus 863 ------------a~-----------i~----~~d~I~trig~--------~D~i~~~~Stf~~Em~ela~iL~~at~~sL 907 (1085)
+. .. ..|.+..-+|. .|+..+|.|........++..+ +.+++.
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~--v~~~~~ 281 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML--VGPASI 281 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee--ecCcce
Confidence 00 00 34556666663 5677788887766666677777 899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech--hHHHhhcC
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH--PLTKEFAS 956 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~--el~~~~~~ 956 (1085)
+.+||+++|+|...+..++.++ ..+.+..+.|.+++=|.. +..+++++
T Consensus 282 ~~~De~t~GLDSsTal~iik~l-r~~a~~~~~t~~vsi~Q~s~~~~~lFD~ 331 (1391)
T KOG0065|consen 282 LFWDEITRGLDSSTAFQIIKAL-RQLAHITGATALVSILQPSPEIYDLFDD 331 (1391)
T ss_pred eeeecccccccHHHHHHHHHHH-HHHHhhhcceEEEEeccCChHHHHhhhh
Confidence 9999999999999888777644 455555678888887764 33444443
No 453
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.15 E-value=0.00073 Score=71.36 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.|..++|+|||||||||+++.++..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5679999999999999999998764
No 454
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.00093 Score=79.01 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=58.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh---hccccccccccccchHHHHH---HHcCCccccccccchhhHHhHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA---QLGCFVPCEMCVLSLADTIF---TRLGATDRIMTGESTFLVECTETAS 897 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila---qiG~~VPa~~a~i~~~d~I~---trig~~D~i~~~~Stf~~Em~ela~ 897 (1085)
.|++++|+||||+||||+++.++...++. .-+.++.++..+++.++++. ..+|..-..... -.++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~-------~~dl~~ 262 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD-------IADLQL 262 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC-------HHHHHH
Confidence 35799999999999999999998754432 22336777778888777643 233433221111 122345
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHH
Q 040956 898 VLQKATQDSLVILDELGRGTSTFD 921 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~D 921 (1085)
.+....+.+++++|.+ |-+..+
T Consensus 263 al~~l~~~d~VLIDTa--Grsqrd 284 (420)
T PRK14721 263 MLHELRGKHMVLIDTV--GMSQRD 284 (420)
T ss_pred HHHHhcCCCEEEecCC--CCCcch
Confidence 5556778899999987 555555
No 455
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.12 E-value=0.00092 Score=77.48 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=55.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc-cccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~-a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a 902 (1085)
++..++|+||+||||||+|+.+.....-..-+..+-.+. .++. .......+. ...+....-+|.. -++.+| .
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~~~---~l~~~l--r 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSFAN---ALRAAL--R 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCHHH---HHHHhh--c
Confidence 346899999999999999998755321111121111111 0000 000000000 0001001112211 144445 4
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
.+|++|++||+ .+... +..+++. .. .|..++.++|-....
T Consensus 194 ~~pd~i~vgEi---rd~~~----~~~~l~a-a~-tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 194 EDPDVILIGEM---RDLET----VELALTA-AE-TGHLVFGTLHTNSAA 233 (343)
T ss_pred cCCCEEEEeCC---CCHHH----HHHHHHH-HH-cCCcEEEEEcCCCHH
Confidence 79999999999 45433 2333442 33 488888888875443
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.00082 Score=80.68 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=55.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh----hccccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA----QLGCFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETA 896 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila----qiG~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela 896 (1085)
.|.+++++||||+||||++..++....+. .+| +++++..+++..+++-. .+|..-..... -.+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~-LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~-------~~Dl~ 326 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA-LLTTDSYRIGGHEQLRIYGKILGVPVHAVKD-------AADLR 326 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE-EEeCCccchhHHHHHHHHHHHhCCCeeccCC-------chhHH
Confidence 35799999999999999999999765443 244 78888877777776532 23322111111 11223
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 040956 897 SVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrG 916 (1085)
..+....+..++|+|.+|++
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHhccCCCeEEeCCCCcC
Confidence 33444567789999998765
No 457
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.12 E-value=0.0011 Score=65.02 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-----h---ccccccccccccchHHHHHHHcCCccccccccchhhHHh-HH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-----Q---LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVEC-TE 894 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-----q---iG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em-~e 894 (1085)
.+.+++|+||.|+||||+++.++.-.... + +....|.....-.++..|...++..... .....++ ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHH
Confidence 35689999999999999999997644321 1 1111222222344566677777644332 1111222 33
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
+...+.... ..+|++||.=. .. ..-....+..+.+..+..+|++.+.
T Consensus 79 ~~~~l~~~~-~~~lviDe~~~----l~-~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRR-VVLLVIDEADH----LF-SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCT-EEEEEEETTHH----HH-THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhcC-CeEEEEeChHh----cC-CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 444443322 26999999821 20 0112233344444556677777665
No 458
>PRK06526 transposase; Provisional
Probab=97.10 E-value=0.0022 Score=71.31 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=58.8
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCC
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~ 904 (1085)
+..++|+||.|+|||+|...++.-.. +-|.-| .+.-...++..+.... ..+ .+...+....+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v-----~f~t~~~l~~~l~~~~--~~~---------~~~~~l~~l~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRV-----LFATAAQWVARLAAAH--HAG---------RLQAELVKLGR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCCch-----hhhhHHHHHHHHHHHH--hcC---------cHHHHHHHhcc
Confidence 45699999999999999999986443 234211 1111222333321110 000 12233444567
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
.+||||||++.--...+...+...++..-.++ ..+|++|+..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 89999999986543344444555555543332 4578888864
No 459
>PRK06893 DNA replication initiation factor; Validated
Probab=97.09 E-value=0.0016 Score=71.13 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=55.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHhhcc-ccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCC
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLG-CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ilaqiG-~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~ 904 (1085)
..+.|.||.|+|||+|++.+|.-....... .|++.... ..+. ..++....+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----------------------~~~~------~~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----------------------QYFS------PAVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----------------------hhhh------HHHHhhccc
Confidence 468999999999999999998754332111 23332100 0000 123344567
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
.++|+|||+.......+.......++..+.+. +.++|++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCC
Confidence 89999999987543222222345566666554 56666666654
No 460
>PRK06921 hypothetical protein; Provisional
Probab=97.06 E-value=0.0029 Score=70.86 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=60.8
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHh--hccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILA--QLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ila--qiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a 902 (1085)
+..++|+||.|.|||.|+..|+..++-. .-..|++.. ..++.+.. .| ......+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~----~l~~~l~~-------------~~----~~~~~~~~~~ 175 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV----EGFGDLKD-------------DF----DLLEAKLNRM 175 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH----HHHHHHHH-------------HH----HHHHHHHHHh
Confidence 4579999999999999999998754432 122344431 11221111 01 1122345556
Q ss_pred CCCcEEEEeCCCC---CCCh--HHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 903 TQDSLVILDELGR---GTST--FDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 903 t~~sLvLLDEpgr---GTs~--~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
...+|||||+++. |+.. .........++.+.... +..+|++|+..
T Consensus 176 ~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~-~k~tIitsn~~ 225 (266)
T PRK06921 176 KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLN-HKPILISSELT 225 (266)
T ss_pred cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 7899999999955 5532 22233355666665543 56788888863
No 461
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.05 E-value=0.0031 Score=69.23 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=63.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHh--hcc-----------ccccccccccchHH---HHHHHcCC---cccccc--
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILA--QLG-----------CFVPCEMCVLSLAD---TIFTRLGA---TDRIMT-- 883 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ila--qiG-----------~~VPa~~a~i~~~d---~I~trig~---~D~i~~-- 883 (1085)
|.+.+|+||.|+|||||+-+++..+... -.| .|+..+...-.+.. .+...++. .+++..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 3578999999999999999998754321 111 12333322111222 23333321 111111
Q ss_pred cc----chhh----HHhHHHHHHHHh--CCCCcEEEEeCCCCC------CChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 884 GE----STFL----VECTETASVLQK--ATQDSLVILDELGRG------TSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 884 ~~----Stf~----~Em~ela~iL~~--at~~sLvLLDEpgrG------Ts~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
+. .... .....+..+++. ..++.+||+| |..+ .+..+...+ ...+..+.++.++++|+++|.
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~-~~~L~~~a~~~g~avl~v~H~ 158 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAV-IKALRRIAAQTGAAILLVHHV 158 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHH-HHHHHHHHHHhCCEEEEEecc
Confidence 10 0000 011123333332 4789999999 5432 333333232 344556666679999999998
Q ss_pred hh
Q 040956 948 HP 949 (1085)
Q Consensus 948 ~e 949 (1085)
..
T Consensus 159 ~K 160 (239)
T cd01125 159 RK 160 (239)
T ss_pred Cc
Confidence 64
No 462
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0021 Score=80.67 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=59.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh----hccccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA----QLGCFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETA 896 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila----qiG~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela 896 (1085)
.|++++++||||+||||++..++...... .++ ++.++..+++..+++.+ .+|..-.... .-.++.
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~-lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-------~~~~l~ 255 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLA-LLTTDSFRIGALEQLRIYGRILGVPVHAVK-------DAADLR 255 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEE-EecCcccchHHHHHHHHHHHhCCCCccccC-------CHHHHH
Confidence 35799999999999999999998764332 223 67788788777776543 3443221111 223466
Q ss_pred HHHHhCCCCcEEEEeCCCCCC
Q 040956 897 SVLQKATQDSLVILDELGRGT 917 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGT 917 (1085)
..+..+.+.++||+|=+||.-
T Consensus 256 ~al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 256 FALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred HHHHHhcCCCEEEEeCCCCCc
Confidence 667777788999999998654
No 463
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.002 Score=83.09 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=53.5
Q ss_pred ccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 882 ~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
...+|..+.....+|+.|.....+.|+|||||+.|+++.+...+ ..++..|.++ |.++|++||+.+++. .+++.
T Consensus 485 ~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L-~~~L~~L~~~-G~TVIvVeHd~~~i~-~aD~v 558 (924)
T TIGR00630 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL-INTLKRLRDL-GNTVIVVEHDEETIR-AADYV 558 (924)
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH-HHHHHHHHhC-CCEEEEEECCHHHHh-hCCEE
Confidence 34445555555567777732223589999999999999986654 4567777765 899999999999876 56654
No 464
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.03 E-value=0.0005 Score=59.76 Aligned_cols=32 Identities=41% Similarity=0.435 Sum_probs=25.2
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++.|+. .|.+.+|+||||+||||+|..+..+
T Consensus 15 ~~~~~~~-----~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 15 ETIDFDP-----RGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred eEEeecC-----CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4555553 2568999999999999999998664
No 465
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.99 E-value=0.0018 Score=83.66 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=58.9
Q ss_pred HHHcCCc----cccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 872 FTRLGAT----DRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 872 ~trig~~----D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
+..+|.. +.....+|..+.....+|++|.....+.|+|||||+.|+++.+...+ ..++..|.+. |.|+|++||+
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L-~~~L~~L~~~-G~TVIvVeH~ 550 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRL-IETLKHLRDL-GNTLIVVEHD 550 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHH-HHHHHHHHhC-CCEEEEEeCC
Confidence 3445543 33445566666666678888832223489999999999999987654 4566777664 8999999999
Q ss_pred hhHHHhhcCcc
Q 040956 948 HPLTKEFASHP 958 (1085)
Q Consensus 948 ~el~~~~~~~~ 958 (1085)
.+.+. .+++.
T Consensus 551 ~~~i~-~aD~v 560 (943)
T PRK00349 551 EDTIR-AADYI 560 (943)
T ss_pred HHHHH-hCCEE
Confidence 99876 36553
No 466
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.99 E-value=0.0055 Score=66.24 Aligned_cols=127 Identities=15% Similarity=0.145 Sum_probs=66.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh------cc-cccccccc-ccchHHHHHHHcCCc-----ccccc-ccchhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ------LG-CFVPCEMC-VLSLADTIFTRLGAT-----DRIMT-GESTFL 889 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq------iG-~~VPa~~a-~i~~~d~I~trig~~-----D~i~~-~~Stf~ 889 (1085)
.|+++.|+||+|+|||||+.+++....... .+ .|+-.+.. ....+.++....+.. +++.- ...+ .
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~-~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN-G 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC-H
Confidence 678999999999999999999987655432 22 34444321 122223333333321 11110 0111 1
Q ss_pred HHhHHHHHHHHh---CCCCcEEEEeCCCCCCC--------hHHHHHHH---HHHHHHHHHhcCceEEEEEechhHH
Q 040956 890 VECTETASVLQK---ATQDSLVILDELGRGTS--------TFDGYAIA---YAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 890 ~Em~ela~iL~~---at~~sLvLLDEpgrGTs--------~~Dg~aia---~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
.++..+..-+.. ..+..||++|-+..=.. ..+..... ...|..++++.++++|+++|-....
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~ 172 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKV 172 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeec
Confidence 222222222211 35788999998742111 11211221 2335566666799999999875443
No 467
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0071 Score=71.11 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhh-----ccccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQ-----LGCFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETA 896 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaq-----iG~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela 896 (1085)
+.+++++||||+||||.+.-++....+.. --.++-++..+.+-.+++-+ .+|.. +.... . ..++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~~~-~----~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKAIE-S----FKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEeeC-c----HHHHH
Confidence 35899999999999999988876444321 11255566555555555332 23332 11111 1 13455
Q ss_pred HHHHhCCCCcEEEEeCCCCCCC
Q 040956 897 SVLQKATQDSLVILDELGRGTS 918 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs 918 (1085)
..+....+.++||+|++|+...
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSPK 268 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCcc
Confidence 5666677889999999988753
No 468
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.98 E-value=0.0017 Score=77.00 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=72.5
Q ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccc--ccccccccchHHHHHHHcCC---ccc-ccc
Q 040956 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF--VPCEMCVLSLADTIFTRLGA---TDR-IMT 883 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~--VPa~~a~i~~~d~I~trig~---~D~-i~~ 883 (1085)
+.+. .+.+. +|+.++|.|+||+|||||+++++... -+..|.+ +.... ....+.+...++. ... +..
T Consensus 146 aID~-ll~I~----~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGerg--~ev~e~~~~~l~~~gl~~tvvv~ 217 (432)
T PRK06793 146 SIDS-MLTIG----IGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGERG--REVKDFIRKELGEEGMRKSVVVV 217 (432)
T ss_pred EEec-cceec----CCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCCCc--ccHHHHHHHHhhhcccceeEEEE
Confidence 4444 36665 78999999999999999999997743 2222321 11111 1222222222221 111 122
Q ss_pred ccchhhHHhH--------HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhc
Q 040956 884 GESTFLVECT--------ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFA 955 (1085)
Q Consensus 884 ~~Stf~~Em~--------ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~ 955 (1085)
..|.-...+. .+|.-++....+-|||+|+++++.++. ......+...-.. |-+..+.||...+++...
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~---reisl~~~e~p~~-G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR---RSVDIAVKELPIG-GKTLLMESYMKKLLERSG 293 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH---HHHHHHhcCCCCC-CeeeeeeccchhHHHHhc
Confidence 2222222222 244445555789999999996554433 2222222322222 556777788777777665
Q ss_pred C
Q 040956 956 S 956 (1085)
Q Consensus 956 ~ 956 (1085)
.
T Consensus 294 ~ 294 (432)
T PRK06793 294 K 294 (432)
T ss_pred c
Confidence 4
No 469
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.96 E-value=0.0034 Score=69.87 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=28.4
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i 850 (1085)
..++++.-+.. +|++++|+||.|+|||||+.+++....
T Consensus 18 ~~Ld~~~gG~~----~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 18 PVLNKLTKGLR----KGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred ceeeeeeEEEc----CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34444443333 688999999999999999999976543
No 470
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.0082 Score=70.19 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=52.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHh--hccccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILA--QLGCFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ila--qiG~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela~iL 899 (1085)
+.+++|+||||+||||++..++...... .+| ++-++..+++-++++-+ .+|..-.... .-..+...+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg-lI~aDt~RiaAvEQLk~yae~lgipv~v~~-------d~~~L~~aL 312 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG-FITTDHSRIGTVQQLQDYVKTIGFEVIAVR-------DEAAMTRAL 312 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE-EEecCCcchHHHHHHHHHhhhcCCcEEecC-------CHHHHHHHH
Confidence 3589999999999999999998643211 133 56666666666666554 2332211111 112233444
Q ss_pred HhC---CCCcEEEEeCCCCCCC
Q 040956 900 QKA---TQDSLVILDELGRGTS 918 (1085)
Q Consensus 900 ~~a---t~~sLvLLDEpgrGTs 918 (1085)
..+ .+.++||+|-+||.-.
T Consensus 313 ~~lk~~~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 313 TYFKEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HHHHhccCCCEEEEeCccccCc
Confidence 333 3579999999987554
No 471
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.96 E-value=0.0036 Score=68.12 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-------ccccccccc-cccchHHHHHHHcCCc-----ccccccc-c---
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-------LGCFVPCEM-CVLSLADTIFTRLGAT-----DRIMTGE-S--- 886 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-------iG~~VPa~~-a~i~~~d~I~trig~~-----D~i~~~~-S--- 886 (1085)
.|+++.|+||+|+|||||+.+++....+.. -..|+-.+. +....+..+...++.. +++.-.. .
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCHH
Confidence 678999999999999999999986544321 222343332 1122222333333321 1111000 0
Q ss_pred hhhHHhHHHHHHHHhCCCCcEEEEeCCCCC------CC--hHHHHHHH---HHHHHHHHHhcCceEEEEEech
Q 040956 887 TFLVECTETASVLQKATQDSLVILDELGRG------TS--TFDGYAIA---YAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 887 tf~~Em~ela~iL~~at~~sLvLLDEpgrG------Ts--~~Dg~aia---~avle~L~~~~~~tiL~aTH~~ 948 (1085)
.+..-+.++...+....+..||++|-++.= .. ..+..... ...|..++++.++++|+++|-.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 111112233344433338899999998431 00 01221222 2344555666799999888754
No 472
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.95 E-value=0.004 Score=65.42 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=58.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh--cc---------ccccccccccchHHHHHHHcCCcc---c--ccc----
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ--LG---------CFVPCEMCVLSLADTIFTRLGATD---R--IMT---- 883 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq--iG---------~~VPa~~a~i~~~d~I~trig~~D---~--i~~---- 883 (1085)
+|.+++|+||.|+||||++-+++......+ .| +|+..+...-.+..++....+..+ + +..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 467999999999999999999987554311 11 123222221112222211111110 0 000
Q ss_pred ----------ccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCC----hHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 884 ----------GESTFLVECTETASVLQKATQDSLVILDELGRGTS----TFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 884 ----------~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs----~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
........+.++...+....++.+|++|=+..-+. ..+...-....+..++++.|+++|++.|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 188 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT 188 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 00011223455666665446799999995432222 12222234455666766779988888775
No 473
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.90 E-value=0.0026 Score=75.91 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=31.3
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+..+.+++ +.+. +|++++|+|+||+|||||+++++..
T Consensus 145 g~~vid~l-~~i~----~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 145 GVRAIDSL-LTVG----KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred chhhhhee-eeec----CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 34567777 8776 7899999999999999999998764
No 474
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.0071 Score=72.13 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=53.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHH-Hh--hccccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVI-LA--QLGCFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETASV 898 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~i-la--qiG~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela~i 898 (1085)
+++++++||+|+||||++-.++.... .. .-..+|.++..+.+..+.+.+ .+|..-.... ...++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~-------~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY-------DPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccC-------CHHhHHHH
Confidence 45899999999999999988876544 21 112266666655544444432 2332211111 11345566
Q ss_pred HHhCCCCcEEEEeCCCCCCC
Q 040956 899 LQKATQDSLVILDELGRGTS 918 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs 918 (1085)
+....+.++||+|.||+.-.
T Consensus 294 l~~~~~~DlVlIDt~G~~~~ 313 (424)
T PRK05703 294 LEQLRDCDVILIDTAGRSQR 313 (424)
T ss_pred HHHhCCCCEEEEeCCCCCCC
Confidence 66667889999999977443
No 475
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.88 E-value=0.0025 Score=76.37 Aligned_cols=110 Identities=13% Similarity=0.171 Sum_probs=61.6
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHhhc---cccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILAQL---GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ilaqi---G~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a 902 (1085)
.-++|.||.|+|||.|++.++.-.....- ..|++++.. +..+...+... .+.++...+ .
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f----~~~~~~~~~~~------------~~~~f~~~~--~ 192 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF----LNDLVDSMKEG------------KLNEFREKY--R 192 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH----HHHHHHHHhcc------------cHHHHHHHH--H
Confidence 35899999999999999999875433221 235554321 22222222110 111222222 2
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEE-echhHHHhh
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT-HYHPLTKEF 954 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aT-H~~el~~~~ 954 (1085)
.++++|||||+....+..........++..+.+. +..+|++| |.+.....+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEF 244 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHHH
Confidence 3689999999976654332222234456666665 66677766 666555444
No 476
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.85 E-value=0.0075 Score=70.68 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=64.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|.+++|.|++|+|||||+.+++...... .-..|+..+.. ...+..-..++|.. +++.-...+. +.++...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~~---le~I~~~i~- 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAETN---LEDILASIE- 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccCc---HHHHHHHHH-
Confidence 67899999999999999999997643322 12335544322 11122223456642 2221111111 233333332
Q ss_pred CCCCcEEEEeCCCC----CCC-----hHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 902 ATQDSLVILDELGR----GTS-----TFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 902 at~~sLvLLDEpgr----GTs-----~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
..++++|++|++.. ..+ ...-..++. .|..++++.++++|++.|-.
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~-~L~~lak~~~itvilvghvt 210 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTA-ELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHH-HHHHHHHHcCCeEEEEeecc
Confidence 35899999999721 110 011112222 34455566689999998853
No 477
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.84 E-value=0.011 Score=64.69 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=65.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh--hccccccccccccchHHHHHHH-cCCccc-cccc---------------
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA--QLGCFVPCEMCVLSLADTIFTR-LGATDR-IMTG--------------- 884 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila--qiG~~VPa~~a~i~~~d~I~tr-ig~~D~-i~~~--------------- 884 (1085)
+|++++|.|+.|+|||||+.+++...... +-.+|+..+...-.+..++... .+.... +..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIG 91 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987654432 2333444433222233332211 111000 0000
Q ss_pred -----------cchh-hHHhHHHHHHHHhCCCCcEEEEeCCCC---CC---ChHHHHHHHHHHHHHHHHhcCceEEEEEe
Q 040956 885 -----------ESTF-LVECTETASVLQKATQDSLVILDELGR---GT---STFDGYAIAYAVFRQLVERINCRLLFATH 946 (1085)
Q Consensus 885 -----------~Stf-~~Em~ela~iL~~at~~sLvLLDEpgr---GT---s~~Dg~aia~avle~L~~~~~~tiL~aTH 946 (1085)
.+.+ ..++.+....+....++.+|++|=+.. +. +......-...-|..++++.++++|+++|
T Consensus 92 ~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q 171 (242)
T cd00984 92 ELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred HHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 0001 112222222222234889999995531 11 11222222334456667778999999999
Q ss_pred chhH
Q 040956 947 YHPL 950 (1085)
Q Consensus 947 ~~el 950 (1085)
...-
T Consensus 172 ~~r~ 175 (242)
T cd00984 172 LSRG 175 (242)
T ss_pred cChh
Confidence 6543
No 478
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.83 E-value=0.0027 Score=61.93 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=54.3
Q ss_pred EEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC--C-C
Q 040956 828 LLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA--T-Q 904 (1085)
Q Consensus 828 ~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a--t-~ 904 (1085)
++|+||.|+||||+.+.++.. +|..+ ..+...+ +.. . ........+..++..+ . .
T Consensus 1 ill~G~~G~GKT~l~~~la~~-----l~~~~----~~i~~~~-~~~---------~---~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-----LGFPF----IEIDGSE-LIS---------S---YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-----TTSEE----EEEETTH-HHT---------S---STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhh-----ccccc----ccccccc-ccc---------c---ccccccccccccccccccccc
Confidence 589999999999999999764 22110 0111000 000 0 1111122333333332 2 4
Q ss_pred CcEEEEeCCCCCCChH------HHHHHHHHHHHHHHHhc----CceEEEEEechhHH
Q 040956 905 DSLVILDELGRGTSTF------DGYAIAYAVFRQLVERI----NCRLLFATHYHPLT 951 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~------Dg~aia~avle~L~~~~----~~tiL~aTH~~el~ 951 (1085)
+.+|++||.-.-.... ....+...++..+.... +..+|++|++.+.+
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i 115 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKI 115 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhC
Confidence 8999999974333222 23344555555554432 25788888886554
No 479
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0057 Score=73.86 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh---ccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ---LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq---iG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~ 900 (1085)
.|.+++|+||+|+||||++..++......+ -..++..+...++-.+.+...-... .+.... .....++..+|+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iL-gv~v~~---a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQL-GIAVHE---ADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhccc-CceeEe---cCcHHHHHHHHH
Confidence 467999999999999999998877544432 1235666665555555544331110 000000 011234556666
Q ss_pred hCCCCcEEEEeCCCCC
Q 040956 901 KATQDSLVILDELGRG 916 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrG 916 (1085)
...+.++||+|.+|++
T Consensus 425 ~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 425 RLRDYKLVLIDTAGMG 440 (559)
T ss_pred HhccCCEEEecCCCcc
Confidence 6678999999999876
No 480
>PRK08181 transposase; Validated
Probab=96.81 E-value=0.006 Score=68.41 Aligned_cols=104 Identities=27% Similarity=0.344 Sum_probs=62.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCC
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~ 904 (1085)
++.++|+||.|+|||-|+..++..++.. |.-| .+.-...++..+..... . ......+....+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v-----~f~~~~~L~~~l~~a~~---~--------~~~~~~l~~l~~ 167 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRV-----LFTRTTDLVQKLQVARR---E--------LQLESAIAKLDK 167 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc--CCce-----eeeeHHHHHHHHHHHHh---C--------CcHHHHHHHHhc
Confidence 4579999999999999999998754432 3211 11111223333321100 0 112334555678
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
.+||||||+|.-........+...++....+ +..+|++|+..
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~--~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYE--RRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHh--CCCEEEEcCCC
Confidence 8999999998765545555556667765544 35688888764
No 481
>PF13173 AAA_14: AAA domain
Probab=96.77 E-value=0.0053 Score=60.76 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHH-HHHh-C
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETAS-VLQK-A 902 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~-iL~~-a 902 (1085)
+++++|+||-++||||++++++.-.....-..|+..+.... ..+ ..+ + +.. +++. .
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~-------~~~----------~~~--~---~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD-------RRL----------ADP--D---LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH-------HHH----------hhh--h---hHHHHHHhhc
Confidence 46899999999999999999975322111112332221111 000 000 0 111 1111 1
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhc-CceEEEEEechhHH
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI-NCRLLFATHYHPLT 951 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~-~~tiL~aTH~~el~ 951 (1085)
....+|+|||.-.= .+ .+..+..+.+.. ++.+++++......
T Consensus 60 ~~~~~i~iDEiq~~---~~----~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 60 PGKKYIFIDEIQYL---PD----WEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred cCCcEEEEehhhhh---cc----HHHHHHHHHHhccCceEEEEccchHHH
Confidence 36899999999333 23 344556666653 57888888876555
No 482
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.76 E-value=0.0037 Score=73.17 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=39.7
Q ss_pred EEEEEcceeeeeecCCCCccccc-----------ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 790 VLKIKGLWHPFALGENGGLPVPN-----------DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~n-----------disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.++++..-|- +.++++. |+.+.+. +|+.++|+||.|+|||||++.++-.
T Consensus 130 ri~Fe~LTf~YP----~er~~Le~~~~~~~~R~id~~~pig----~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 130 RVLFENLTPLYP----NERLRLETSTEDLSTRVLDLFAPIG----KGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CeEEEEeeecCC----CccceeecCccccceeeeeeEEEeC----CCCEEEEECCCCCChhHHHHHHHHh
Confidence 477888776662 2335553 8888877 7999999999999999999998664
No 483
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.019 Score=64.46 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH-hhccccccccccccchHHHHHHHc---CCccccccccchhhHHhHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL-AQLGCFVPCEMCVLSLADTIFTRL---GATDRIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il-aqiG~~VPa~~a~i~~~d~I~tri---g~~D~i~~~~Stf~~Em~ela~iL 899 (1085)
++..++++||||+||||+++.++....- .....++-++..+++.+.++-+.. +..-...... ..+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~----~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE----AAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCH----HHHHHHHHHH
Confidence 4679999999999999999999765322 112225666655666666554432 2111110111 1222222223
Q ss_pred HhCCCCcEEEEeCCCCCC
Q 040956 900 QKATQDSLVILDELGRGT 917 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGT 917 (1085)
....+.++||+|-||+.-
T Consensus 150 ~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 150 KEEARVDYILIDTAGKNY 167 (270)
T ss_pred HhcCCCCEEEEECCCCCc
Confidence 233467999999998764
No 484
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.75 E-value=0.007 Score=67.10 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.2
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||||+||||+++.++.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999999998854
No 485
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.73 E-value=0.01 Score=71.42 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=65.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCcc-ccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGATD-RIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~D-~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|.+++|.|++|+|||||+.+++...... .-..|+-.+... ..+..-..++|... ++.--..+ .+.++...+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~-~qi~~ra~rlg~~~~~l~~~~e~---~~~~I~~~i~- 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL-QQIKMRAIRLGLPEPNLYVLSET---NWEQICANIE- 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH-HHHHHHHHHcCCChHHeEEcCCC---CHHHHHHHHH-
Confidence 68899999999999999999997643221 112355443321 11111233555321 11111111 1333444442
Q ss_pred CCCCcEEEEeCCCCCCC---------hHHHHHHHHHHHHHHHHhcCceEEEEEechh
Q 040956 902 ATQDSLVILDELGRGTS---------TFDGYAIAYAVFRQLVERINCRLLFATHYHP 949 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs---------~~Dg~aia~avle~L~~~~~~tiL~aTH~~e 949 (1085)
..++++|++|.+..=.. ..+-..++. .|..++++.++++|+++|...
T Consensus 168 ~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~-~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 168 EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTA-ELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred hcCCcEEEEecchhhcccccccCCCCHHHHHHHHH-HHHHHHHHhCCEEEEEecccc
Confidence 35789999998732111 111122233 344555667999999999643
No 486
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.72 E-value=0.0076 Score=72.36 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=65.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|.+++|.|+.|+|||||+.+++...... .-..|+..+...-.+ -.-..++|.. +++.-...+ .+.++...++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi-~~ra~rlg~~~~~l~~~~e~---~l~~i~~~i~- 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI-KLRAERLGLPSDNLYLLAET---NLEAILATIE- 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH-HHHHHHcCCChhcEEEeCCC---CHHHHHHHHH-
Confidence 67899999999999999999997754321 223566554322111 1224556642 222111111 1223333332
Q ss_pred CCCCcEEEEeCCCCCCC---------hHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 902 ATQDSLVILDELGRGTS---------TFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs---------~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
..++++|++|++..=.. ...-..++.. |..++++.++++|+++|-
T Consensus 154 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~-L~~~ak~~~itvilv~hv 207 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAE-LMRLAKQRGIAVFLVGHV 207 (446)
T ss_pred hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeec
Confidence 25789999999742211 1111222333 344556669999999984
No 487
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.011 Score=63.35 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=62.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCC-----ccccc-cccchhhH---HhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGA-----TDRIM-TGESTFLV---ECT 893 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~-----~D~i~-~~~Stf~~---Em~ 893 (1085)
.|.++.|+||+|+|||||..+++...... .-..|+..+.... +++...... .+++. .....+.. -+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~---~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSP---ERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCH---HHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 57899999999999999998887654322 2345666654221 222222111 01110 11111111 122
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChH---H---HH-HHHH--HHHHHHHHhcCceEEEEEech
Q 040956 894 ETASVLQKATQDSLVILDELGRGTSTF---D---GY-AIAY--AVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~~---D---g~-aia~--avle~L~~~~~~tiL~aTH~~ 948 (1085)
.+...+. ...+++|++|-+..=.... + .. .+.. ..|..++++.++++|++.|-.
T Consensus 88 ~l~~~~~-~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 88 KTSKFID-RDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HHHHHHh-hcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 2333332 1368999999984211100 1 11 1111 224455566799999998854
No 488
>PRK12377 putative replication protein; Provisional
Probab=96.71 E-value=0.0071 Score=67.06 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=62.3
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCC
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQD 905 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~ 905 (1085)
..++|+||.|+|||.|+..|+...+. -|..| .+..+..++..+... ...+. ....+++.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v-----~~i~~~~l~~~l~~~--~~~~~--------~~~~~l~~l~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSV-----IVVTVPDVMSRLHES--YDNGQ--------SGEKFLQELCKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCCe-----EEEEHHHHHHHHHHH--Hhccc--------hHHHHHHHhcCC
Confidence 46899999999999999999875442 23222 111111222222110 00000 122456667899
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
+||||||+|.--.+.....+...++++-... +..+||+|..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~-~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTAS-MRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEcCC
Confidence 9999999976544444556667777765443 4667888875
No 489
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.68 E-value=0.0045 Score=65.16 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=60.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCC
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~ 904 (1085)
+.-++|+||.|.|||.|.-.++.-.+. -|..| .+--+..++..+..... .+ . ....++...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v-----~f~~~~~L~~~l~~~~~--~~--~-------~~~~~~~l~~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGYSV-----LFITASDLLDELKQSRS--DG--S-------YEELLKRLKR 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT--E-----EEEEHHHHHHHHHCCHC--CT--T-------HCHHHHHHHT
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcce-----eEeecCceecccccccc--cc--c-------hhhhcCcccc
Confidence 567999999999999999988765444 23111 22223445555432211 01 0 1123344457
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 905 DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
.+||||||+|....+.....+...+++.-.++ ..+||+|..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~--~~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYER--KPTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT---EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhcc--cCeEeeCCC
Confidence 89999999988766566666677777765543 467777765
No 490
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0092 Score=68.43 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=65.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH-hhccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL-AQLGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il-aqiG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|+++.|.||.|+|||||.-+++..... .....|+.++...-+ ....++|.. +++.--......+..++...+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~---~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH---HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6889999999999999997766443321 122235555432221 234555532 22221111122233333333333
Q ss_pred CCCCcEEEEeCCCCCCCh-------------HHHHHHHH--HHHHHHHHhcCceEEEEEechh
Q 040956 902 ATQDSLVILDELGRGTST-------------FDGYAIAY--AVFRQLVERINCRLLFATHYHP 949 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~-------------~Dg~aia~--avle~L~~~~~~tiL~aTH~~e 949 (1085)
....++|++|-.+.=... .....+.. ..|..++++.++++||+.+-.+
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~ 193 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIRE 193 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 467899999987422211 11111112 2244555667999999987444
No 491
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.67 E-value=0.0042 Score=68.70 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=61.4
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCc
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDS 906 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~s 906 (1085)
.++|.|+.|+|||+|+..|+..... .|.-| .-++ +..++..+.. +|...-.....+++.....+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~--~g~~v----~~it-~~~l~~~l~~---------~~~~~~~~~~~~l~~l~~~d 164 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL--RGKSV----LIIT-VADIMSAMKD---------TFSNSETSEEQLLNDLSNVD 164 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh--cCCeE----EEEE-HHHHHHHHHH---------HHhhccccHHHHHHHhccCC
Confidence 6899999999999999999874332 23211 1111 1223322211 11000001223455566899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 907 LvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
||+|||+|.-..+.....+...++++-... +..+|++|..
T Consensus 165 lLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~-~~~tiitSNl 204 (244)
T PRK07952 165 LLVIDEIGVQTESRYEKVIINQIVDRRSSS-KRPTGMLTNS 204 (244)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCCEEEeCCC
Confidence 999999988665555556677777764433 5678888876
No 492
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.66 E-value=0.0038 Score=70.44 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=52.2
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHh---hccccccccccccchHHHHHHH---cCCccccccccchhhHHhHHHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILA---QLGCFVPCEMCVLSLADTIFTR---LGATDRIMTGESTFLVECTETASV 898 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ila---qiG~~VPa~~a~i~~~d~I~tr---ig~~D~i~~~~Stf~~Em~ela~i 898 (1085)
+.+++|+||+|+||||++..++...... .--++|.++....+..+.+... +|..-.... .-.++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~-------~~~~l~~~ 266 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR-------DPKELRKA 266 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC-------CHHHHHHH
Confidence 5689999999999999999887654332 2223677776665555554321 222111111 11235566
Q ss_pred HHhCCCCcEEEEeCCC
Q 040956 899 LQKATQDSLVILDELG 914 (1085)
Q Consensus 899 L~~at~~sLvLLDEpg 914 (1085)
+..+...++||+|.+|
T Consensus 267 l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 267 LDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHccCCCEEEEeCCC
Confidence 6666678999999985
No 493
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.63 E-value=0.0044 Score=82.73 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+++++|+||+|.|||||+|.++.
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHH
Confidence 578999999999999999999965
No 494
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.63 E-value=0.0055 Score=65.57 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=56.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHHHHHHh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
++++++||+|+||||.+=-++....+. .--+++.++..+++-++++-+ .+|..=......+. ....+...++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~---~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD---PAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC---HHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh---hHHHHHHHHHH
Confidence 589999999999999886665433322 111256678888888887643 34432111111110 11112233433
Q ss_pred C--CCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 040956 902 A--TQDSLVILDELGRGTSTFDGYAIAYAVFRQ 932 (1085)
Q Consensus 902 a--t~~sLvLLDEpgrGTs~~Dg~aia~avle~ 932 (1085)
. .+.++||+|-||++-...+...-...+++.
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~ 111 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEA 111 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHH
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhh
Confidence 3 456899999999886544433333334433
No 495
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.62 E-value=0.01 Score=64.26 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=63.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHH-cC-Cccccc-cccchh---hHHhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTR-LG-ATDRIM-TGESTF---LVECTETA 896 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~tr-ig-~~D~i~-~~~Stf---~~Em~ela 896 (1085)
.|.++.|+||.|+|||||..+++...... .-.+|+..+......+.++... +. ..+++. .....+ ..-+..+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 101 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAE 101 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHHH
Confidence 57899999999999999999987654433 3345666652211222222221 00 001110 011111 11122233
Q ss_pred HHHHhCCCCcEEEEeCCCCCC--------ChHH-HHHHHH--HHHHHHHHhcCceEEEEEech
Q 040956 897 SVLQKATQDSLVILDELGRGT--------STFD-GYAIAY--AVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGT--------s~~D-g~aia~--avle~L~~~~~~tiL~aTH~~ 948 (1085)
.++. .+..+|++|-+..=. +..+ ...+.. ..|..++++.++++|++.|-.
T Consensus 102 ~~~~--~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~ 162 (225)
T PRK09361 102 KLAK--ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVY 162 (225)
T ss_pred HHHH--hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccce
Confidence 3332 688999999983211 1111 112222 124455566799999988854
No 496
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.61 E-value=0.0032 Score=69.84 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|+.++|+||+|+|||||++.+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999999998753
No 497
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.59 E-value=0.016 Score=62.96 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|++++|.||+|+|||||..+++..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 6889999999999999999988653
No 498
>PRK08727 hypothetical protein; Validated
Probab=96.56 E-value=0.0088 Score=65.62 Aligned_cols=93 Identities=24% Similarity=0.299 Sum_probs=56.8
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhcc---ccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLG---CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG---~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
...++|.||.|+|||.|++.++.... +.| .|++... +. ..+..++..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~-------------------------~~---~~~~~~~~~ 90 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA-------------------------AA---GRLRDALEA 90 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH-------------------------hh---hhHHHHHHH
Confidence 35799999999999999999876432 223 2333211 00 012234445
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
..+.++|+|||...-............++.++.+. +..+|++++..
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~-~~~vI~ts~~~ 136 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAA-GITLLYTARQM 136 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHc-CCeEEEECCCC
Confidence 56778999999875543222222333466665443 66799999863
No 499
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.54 E-value=0.01 Score=70.12 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++-++|.||+|+|||++.|.++..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999763
No 500
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.53 E-value=0.014 Score=66.61 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=60.4
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccc-hHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCC
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLS-LADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQ 904 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~-~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~ 904 (1085)
.-+.|.||.|.|||.|+..+|.-.. +-|.-| .....+ ++..+-..++. + .+...+.....
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v--~~~~~~~l~~~lk~~~~~------~---------~~~~~l~~l~~ 217 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELA--KKGVSS--TLLHFPEFIRELKNSISD------G---------SVKEKIDAVKE 217 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCE--EEEEHHHHHHHHHHHHhc------C---------cHHHHHHHhcC
Confidence 4589999999999999999987543 334111 111111 22222221110 0 12344555678
Q ss_pred CcEEEEeCCCCCCChHHHH-HHHHHHHHHHHHhcCceEEEEEech
Q 040956 905 DSLVILDELGRGTSTFDGY-AIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 905 ~sLvLLDEpgrGTs~~Dg~-aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
.+||||||+|...-+.... .+...++++-... +..+||+|.+.
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~-~~~ti~TSNl~ 261 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQE-ELPTFFTSNFD 261 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHHHHHHHHC-CCeEEEECCCC
Confidence 9999999998764433322 4555565554333 56788888863
Done!