Query 040956
Match_columns 1085
No_of_seqs 571 out of 4078
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 21:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8b_B DNA mismatch repair pro 100.0 3E-131 1E-135 1254.9 67.2 783 229-1027 27-989 (1022)
2 3thx_B DNA mismatch repair pro 100.0 5E-118 2E-122 1118.3 59.2 737 267-1028 10-882 (918)
3 1wb9_A DNA mismatch repair pro 100.0 4E-111 1E-115 1047.7 54.3 692 266-1025 3-798 (800)
4 1ewq_A DNA mismatch repair pro 100.0 9E-109 3E-113 1021.6 47.5 662 268-1025 11-764 (765)
5 3thx_A DNA mismatch repair pro 100.0 8E-101 3E-105 965.2 65.4 719 268-1027 14-855 (934)
6 3gfo_A Cobalt import ATP-bindi 99.8 2.4E-18 8.1E-23 190.2 14.5 159 789-959 6-215 (275)
7 4g1u_C Hemin import ATP-bindin 99.8 1.5E-18 5.2E-23 190.9 12.8 160 789-961 10-221 (266)
8 1vpl_A ABC transporter, ATP-bi 99.8 3.3E-18 1.1E-22 187.2 15.2 156 789-958 14-216 (256)
9 3fvq_A Fe(3+) IONS import ATP- 99.8 3.1E-18 1E-22 195.4 15.2 160 790-962 4-213 (359)
10 2pcj_A ABC transporter, lipopr 99.8 3.5E-18 1.2E-22 183.3 14.1 155 789-958 3-209 (224)
11 3tui_C Methionine import ATP-b 99.8 4.4E-18 1.5E-22 194.3 15.6 164 789-961 23-237 (366)
12 2olj_A Amino acid ABC transpor 99.7 6E-18 2.1E-22 185.8 15.1 157 789-959 23-230 (263)
13 1g6h_A High-affinity branched- 99.7 6.3E-18 2.1E-22 185.0 14.4 157 789-959 6-224 (257)
14 3rlf_A Maltose/maltodextrin im 99.7 8.2E-18 2.8E-22 193.2 14.9 160 790-962 3-208 (381)
15 1b0u_A Histidine permease; ABC 99.7 6.8E-18 2.3E-22 185.3 13.6 157 789-959 5-224 (262)
16 1ji0_A ABC transporter; ATP bi 99.7 5.9E-18 2E-22 183.4 12.7 157 789-959 5-210 (240)
17 3tif_A Uncharacterized ABC tra 99.7 1.6E-17 5.4E-22 179.6 15.6 159 791-959 2-216 (235)
18 2nq2_C Hypothetical ABC transp 99.7 8.1E-18 2.8E-22 183.8 13.4 158 789-959 3-200 (253)
19 2yyz_A Sugar ABC transporter, 99.7 2.6E-17 8.9E-22 188.1 16.5 160 790-962 3-208 (359)
20 1z47_A CYSA, putative ABC-tran 99.7 1.9E-17 6.6E-22 188.8 14.6 164 787-962 11-220 (355)
21 3d31_A Sulfate/molybdate ABC t 99.7 1.4E-17 4.8E-22 189.6 13.3 158 791-962 2-202 (348)
22 2onk_A Molybdate/tungstate ABC 99.7 1.8E-17 6.2E-22 179.7 12.5 153 791-959 2-198 (240)
23 2it1_A 362AA long hypothetical 99.7 3.1E-17 1.1E-21 187.7 14.8 160 790-962 3-208 (362)
24 1sgw_A Putative ABC transporte 99.7 1.1E-17 3.8E-22 178.4 9.5 154 789-958 9-203 (214)
25 1v43_A Sugar-binding transport 99.7 2.7E-17 9.1E-22 188.8 13.3 160 790-962 11-216 (372)
26 2ihy_A ABC transporter, ATP-bi 99.7 1.9E-17 6.6E-22 183.3 11.6 156 789-958 20-233 (279)
27 2yz2_A Putative ABC transporte 99.7 4.2E-17 1.4E-21 179.4 13.8 158 790-959 2-209 (266)
28 1g29_1 MALK, maltose transport 99.7 5.1E-17 1.8E-21 186.7 14.8 160 790-962 3-214 (372)
29 1oxx_K GLCV, glucose, ABC tran 99.7 7.4E-17 2.5E-21 184.2 13.9 160 790-962 3-215 (353)
30 2d2e_A SUFC protein; ABC-ATPas 99.7 6E-17 2.1E-21 176.5 11.2 154 790-957 3-213 (250)
31 2ixe_A Antigen peptide transpo 99.7 7.2E-17 2.5E-21 178.0 11.8 158 789-957 15-225 (271)
32 2qi9_C Vitamin B12 import ATP- 99.7 1.1E-16 3.7E-21 174.5 12.4 151 790-958 4-203 (249)
33 2zu0_C Probable ATP-dependent 99.7 1.5E-16 5.2E-21 175.1 11.8 156 789-958 19-235 (267)
34 2ff7_A Alpha-hemolysin translo 99.7 2.2E-16 7.5E-21 171.9 12.7 155 789-957 6-212 (247)
35 1mv5_A LMRA, multidrug resista 99.6 2.2E-16 7.4E-21 171.4 9.8 152 791-957 2-206 (243)
36 2pze_A Cystic fibrosis transme 99.6 1.4E-16 4.8E-21 171.4 8.0 156 789-957 5-198 (229)
37 2ghi_A Transport protein; mult 99.6 6.5E-16 2.2E-20 169.4 11.6 156 789-957 16-222 (260)
38 2pjz_A Hypothetical protein ST 99.6 8E-16 2.7E-20 169.0 12.1 156 791-960 2-198 (263)
39 2cbz_A Multidrug resistance-as 99.6 3E-16 1E-20 169.7 8.5 155 790-957 3-197 (237)
40 3nh6_A ATP-binding cassette SU 99.6 1.3E-15 4.4E-20 170.7 12.0 155 789-958 52-258 (306)
41 2bbs_A Cystic fibrosis transme 99.6 8.1E-16 2.8E-20 171.2 6.8 152 789-957 39-227 (290)
42 1yqt_A RNAse L inhibitor; ATP- 99.6 6.1E-15 2.1E-19 177.4 11.6 159 788-960 285-474 (538)
43 3bk7_A ABC transporter ATP-bin 99.6 8.1E-15 2.8E-19 178.4 12.5 159 788-960 355-544 (607)
44 3gd7_A Fusion complex of cysti 99.5 7.5E-15 2.6E-19 169.5 10.9 159 789-961 18-226 (390)
45 3ozx_A RNAse L inhibitor; ATP 99.5 8.9E-15 3.1E-19 175.8 11.3 160 788-961 267-459 (538)
46 3bk7_A ABC transporter ATP-bin 99.5 2.7E-14 9.1E-19 173.9 13.9 153 794-961 95-301 (607)
47 1yqt_A RNAse L inhibitor; ATP- 99.5 3.1E-14 1.1E-18 171.3 14.0 152 795-961 26-231 (538)
48 3b5x_A Lipid A export ATP-bind 99.5 4.1E-13 1.4E-17 163.1 19.8 155 789-957 340-547 (582)
49 4a82_A Cystic fibrosis transme 99.5 2.1E-13 7E-18 165.6 16.7 156 789-958 338-545 (578)
50 3qf4_B Uncharacterized ABC tra 99.5 1.8E-13 6.3E-18 166.7 16.2 154 790-958 354-559 (598)
51 2yl4_A ATP-binding cassette SU 99.5 5.4E-13 1.9E-17 162.5 20.0 157 791-960 342-553 (595)
52 2iw3_A Elongation factor 3A; a 99.5 1.9E-13 6.5E-18 172.5 15.7 155 789-960 434-617 (986)
53 3b60_A Lipid A export ATP-bind 99.5 4.4E-13 1.5E-17 162.8 18.1 155 789-957 340-547 (582)
54 3j16_B RLI1P; ribosome recycli 99.5 6.9E-14 2.3E-18 170.1 10.5 148 809-960 361-540 (608)
55 3qf4_A ABC transporter, ATP-bi 99.5 9.3E-13 3.2E-17 160.1 20.5 156 789-958 340-547 (587)
56 3j16_B RLI1P; ribosome recycli 99.5 1.6E-13 5.6E-18 166.8 13.3 144 808-961 91-294 (608)
57 3ozx_A RNAse L inhibitor; ATP 99.4 6.8E-13 2.3E-17 159.5 13.7 132 824-961 24-210 (538)
58 3ux8_A Excinuclease ABC, A sub 99.4 4.9E-13 1.7E-17 165.1 11.8 74 882-960 200-275 (670)
59 2iw3_A Elongation factor 3A; a 99.4 5.4E-13 1.9E-17 168.4 9.9 82 870-958 882-968 (986)
60 4gp7_A Metallophosphoesterase; 99.4 4.4E-13 1.5E-17 137.2 6.6 134 813-954 1-165 (171)
61 3ux8_A Excinuclease ABC, A sub 99.3 1.4E-11 4.6E-16 152.2 14.6 71 883-958 542-615 (670)
62 3g5u_A MCG1178, multidrug resi 99.3 4.6E-11 1.6E-15 157.0 18.2 157 790-959 387-595 (1284)
63 3g5u_A MCG1178, multidrug resi 99.3 1.1E-11 3.7E-16 163.0 12.2 157 789-958 1029-1239(1284)
64 4f4c_A Multidrug resistance pr 99.2 6.7E-11 2.3E-15 155.9 15.9 152 790-953 415-618 (1321)
65 3b85_A Phosphate starvation-in 99.2 3.9E-12 1.3E-16 134.9 2.0 125 808-953 13-163 (208)
66 2vf7_A UVRA2, excinuclease ABC 99.2 8.8E-11 3E-15 146.9 13.9 83 871-958 713-802 (842)
67 2r6f_A Excinuclease ABC subuni 99.2 1.2E-10 4.2E-15 146.1 15.0 82 871-957 828-916 (972)
68 2ygr_A Uvrabc system protein A 99.2 1.9E-10 6.5E-15 144.9 15.8 82 871-957 846-934 (993)
69 4aby_A DNA repair protein RECN 99.1 1.6E-10 5.6E-15 133.8 13.6 112 886-1019 297-412 (415)
70 1ye8_A Protein THEP1, hypothet 99.1 1.7E-11 5.7E-16 126.8 4.5 126 827-960 2-155 (178)
71 4f4c_A Multidrug resistance pr 99.1 1.2E-10 4.1E-15 153.4 12.8 152 790-953 1076-1281(1321)
72 2ehv_A Hypothetical protein PH 99.1 1.4E-10 4.8E-15 124.0 10.1 125 824-951 29-185 (251)
73 1znw_A Guanylate kinase, GMP k 99.1 1.1E-11 3.7E-16 130.5 1.3 58 903-960 140-200 (207)
74 3pih_A Uvrabc system protein A 99.1 4.4E-10 1.5E-14 141.8 13.5 70 885-957 806-876 (916)
75 3qf7_A RAD50; ABC-ATPase, ATPa 99.0 6.8E-10 2.3E-14 127.4 12.2 70 885-957 280-353 (365)
76 1cr0_A DNA primase/helicase; R 99.0 1.4E-09 4.9E-14 120.4 12.5 136 808-948 22-197 (296)
77 2npi_A Protein CLP1; CLP1-PCF1 99.0 5.6E-11 1.9E-15 140.2 0.8 134 813-957 130-313 (460)
78 2w0m_A SSO2452; RECA, SSPF, un 98.9 4.2E-09 1.4E-13 110.9 11.6 143 809-957 10-185 (235)
79 1nlf_A Regulatory protein REPA 98.9 3.5E-09 1.2E-13 116.5 11.2 127 824-952 29-185 (279)
80 4a74_A DNA repair and recombin 98.9 4E-09 1.4E-13 111.2 11.1 126 824-950 24-182 (231)
81 1e69_A Chromosome segregation 98.8 3.1E-08 1E-12 111.5 13.6 69 885-957 220-290 (322)
82 3ec2_A DNA replication protein 98.7 7.1E-09 2.4E-13 106.1 6.1 104 824-949 37-144 (180)
83 2cvh_A DNA repair and recombin 98.7 7.3E-08 2.5E-12 100.9 13.1 124 824-949 19-157 (220)
84 1tq4_A IIGP1, interferon-induc 98.7 9.3E-10 3.2E-14 127.9 -3.0 136 808-950 36-237 (413)
85 3qkt_A DNA double-strand break 98.7 7.6E-08 2.6E-12 109.1 12.7 53 902-957 270-322 (339)
86 2pt7_A CAG-ALFA; ATPase, prote 98.7 3.4E-09 1.2E-13 120.0 0.9 116 810-951 160-278 (330)
87 1tf7_A KAIC; homohexamer, hexa 98.7 6.6E-08 2.3E-12 116.0 11.8 139 806-951 23-188 (525)
88 2eyu_A Twitching motility prot 98.6 1.2E-08 4E-13 111.8 4.4 119 809-951 15-136 (261)
89 2kjq_A DNAA-related protein; s 98.6 8.7E-08 3E-12 96.0 9.6 86 824-947 35-124 (149)
90 3b9q_A Chloroplast SRP recepto 98.6 2.1E-08 7E-13 112.2 5.5 123 813-948 92-257 (302)
91 1tf7_A KAIC; homohexamer, hexa 98.6 7.7E-08 2.6E-12 115.4 9.8 126 824-957 280-436 (525)
92 2jeo_A Uridine-cytidine kinase 98.6 1.1E-07 3.9E-12 102.4 9.9 39 806-848 10-48 (245)
93 2og2_A Putative signal recogni 98.6 4.1E-08 1.4E-12 112.2 6.4 120 813-947 149-313 (359)
94 1n0w_A DNA repair protein RAD5 98.6 1.4E-07 4.9E-12 100.2 10.0 128 824-952 23-178 (243)
95 3jvv_A Twitching mobility prot 98.5 5.5E-08 1.9E-12 111.1 5.7 112 824-953 122-236 (356)
96 1pzn_A RAD51, DNA repair and r 98.4 4.3E-07 1.5E-11 103.5 10.6 129 824-952 130-290 (349)
97 2i3b_A HCR-ntpase, human cance 98.4 1.5E-08 5.2E-13 105.7 -1.7 26 825-850 1-26 (189)
98 1z6g_A Guanylate kinase; struc 98.4 1.3E-08 4.6E-13 108.1 -3.0 37 809-849 11-47 (218)
99 3asz_A Uridine kinase; cytidin 98.3 6.3E-09 2.1E-13 109.0 -8.9 36 824-861 5-40 (211)
100 3aez_A Pantothenate kinase; tr 98.3 1.4E-06 4.7E-11 97.8 9.3 39 824-863 89-131 (312)
101 3sop_A Neuronal-specific septi 98.2 1.1E-06 3.9E-11 96.5 6.8 38 906-950 115-152 (270)
102 2obl_A ESCN; ATPase, hydrolase 98.2 1.8E-07 6.1E-12 106.6 -0.6 51 789-848 44-94 (347)
103 3szr_A Interferon-induced GTP- 98.2 1.1E-07 3.9E-12 115.9 -2.8 48 903-951 145-199 (608)
104 2ewv_A Twitching motility prot 98.2 3.2E-06 1.1E-10 97.2 9.0 110 824-951 135-247 (372)
105 3lda_A DNA repair protein RAD5 98.1 4.2E-06 1.5E-10 97.0 10.0 124 824-948 177-328 (400)
106 1s96_A Guanylate kinase, GMP k 98.1 2.6E-06 8.9E-11 90.8 7.5 26 824-849 15-40 (219)
107 1rj9_A FTSY, signal recognitio 98.1 2.6E-06 9E-11 95.2 7.6 26 824-849 101-126 (304)
108 2dr3_A UPF0273 protein PH0284; 98.1 1.1E-05 3.9E-10 85.5 12.1 124 824-950 22-175 (247)
109 2dpy_A FLII, flagellum-specifi 98.1 6.3E-07 2.2E-11 105.1 0.8 51 789-848 130-180 (438)
110 2qag_C Septin-7; cell cycle, c 98.1 4.2E-07 1.4E-11 105.9 -0.8 46 789-849 10-55 (418)
111 2qnr_A Septin-2, protein NEDD5 98.0 2.5E-06 8.5E-11 95.2 4.3 33 806-848 9-41 (301)
112 2zr9_A Protein RECA, recombina 98.0 3.1E-05 1E-09 88.2 13.4 123 824-949 60-199 (349)
113 3e70_C DPA, signal recognition 97.9 2.3E-05 8E-10 88.4 10.2 116 824-949 128-280 (328)
114 2yhs_A FTSY, cell division pro 97.9 2.1E-05 7.2E-10 93.0 9.6 34 812-849 284-317 (503)
115 2px0_A Flagellar biosynthesis 97.9 4.5E-05 1.5E-09 84.9 10.9 123 824-957 104-235 (296)
116 1lw7_A Transcriptional regulat 97.8 1E-05 3.5E-10 92.5 5.5 33 812-848 159-193 (365)
117 1htw_A HI0065; nucleotide-bind 97.8 5.3E-06 1.8E-10 84.0 1.5 39 807-849 19-57 (158)
118 2qag_B Septin-6, protein NEDD5 97.8 9.1E-06 3.1E-10 94.6 3.7 48 790-848 16-65 (427)
119 3hr8_A Protein RECA; alpha and 97.8 0.00018 6.2E-09 82.0 14.1 121 824-947 60-197 (356)
120 1sxj_E Activator 1 40 kDa subu 97.8 4.5E-05 1.6E-09 85.8 9.0 22 828-849 39-60 (354)
121 1f2t_B RAD50 ABC-ATPase; DNA d 97.6 9.9E-05 3.4E-09 73.9 8.5 53 902-957 79-131 (148)
122 2r6a_A DNAB helicase, replicat 97.6 0.00012 4.3E-09 86.0 10.6 134 809-946 191-362 (454)
123 1fnn_A CDC6P, cell division co 97.6 0.00013 4.5E-09 82.6 10.2 121 827-954 46-175 (389)
124 2v9p_A Replication protein E1; 97.5 2.2E-05 7.5E-10 87.8 2.2 60 791-861 102-161 (305)
125 2gza_A Type IV secretion syste 97.5 2.1E-05 7.2E-10 89.9 1.5 34 811-848 165-198 (361)
126 2bbw_A Adenylate kinase 4, AK4 97.4 0.00013 4.3E-09 78.4 5.3 22 825-846 27-48 (246)
127 1v5w_A DMC1, meiotic recombina 97.3 0.00058 2E-08 77.4 10.8 127 824-950 121-276 (343)
128 2qby_A CDC6 homolog 1, cell di 97.3 0.00014 4.7E-09 82.0 5.5 128 824-954 44-179 (386)
129 3lnc_A Guanylate kinase, GMP k 97.3 6.3E-05 2.2E-09 79.9 2.3 37 808-848 14-51 (231)
130 2z4s_A Chromosomal replication 97.3 0.00054 1.8E-08 80.3 9.9 104 825-948 130-237 (440)
131 1vma_A Cell division protein F 97.3 0.00073 2.5E-08 75.5 10.2 88 824-916 103-198 (306)
132 3tr0_A Guanylate kinase, GMP k 97.3 0.0001 3.6E-09 76.0 3.0 25 824-848 6-30 (205)
133 4ad8_A DNA repair protein RECN 97.2 0.0011 3.7E-08 79.3 11.7 67 886-958 399-467 (517)
134 3pih_A Uvrabc system protein A 97.2 0.00051 1.8E-08 87.0 8.7 88 871-961 447-538 (916)
135 2ygr_A Uvrabc system protein A 97.2 0.00093 3.2E-08 84.8 10.8 85 872-961 505-595 (993)
136 1u94_A RECA protein, recombina 97.1 0.0024 8E-08 72.9 12.9 122 824-949 62-201 (356)
137 2r6f_A Excinuclease ABC subuni 97.1 0.00091 3.1E-08 84.6 10.3 85 872-961 488-578 (972)
138 3bos_A Putative DNA replicatio 97.1 0.0005 1.7E-08 72.0 6.8 96 824-948 51-148 (242)
139 1udx_A The GTP-binding protein 97.1 2.5E-05 8.5E-10 91.0 -4.0 33 812-848 148-180 (416)
140 2z43_A DNA repair and recombin 97.1 0.0016 5.6E-08 72.9 10.7 126 824-950 106-260 (324)
141 2w58_A DNAI, primosome compone 97.1 0.00043 1.5E-08 71.5 5.5 24 826-849 55-78 (202)
142 2vf7_A UVRA2, excinuclease ABC 97.1 0.0011 3.6E-08 83.5 9.7 84 872-960 363-452 (842)
143 1ls1_A Signal recognition part 97.0 0.0018 6E-08 71.9 10.0 25 825-849 98-122 (295)
144 1l8q_A Chromosomal replication 97.0 0.00076 2.6E-08 75.1 7.0 103 825-947 37-140 (324)
145 3euj_A Chromosome partition pr 97.0 0.00022 7.7E-09 84.3 2.7 36 809-849 18-53 (483)
146 3a00_A Guanylate kinase, GMP k 97.0 0.00024 8.3E-09 72.9 2.3 24 825-848 1-24 (186)
147 3c8u_A Fructokinase; YP_612366 96.9 0.00033 1.1E-08 73.2 3.0 26 824-849 21-46 (208)
148 1pui_A ENGB, probable GTP-bind 96.9 0.00034 1.2E-08 72.2 2.8 47 790-848 3-49 (210)
149 1lvg_A Guanylate kinase, GMP k 96.9 0.00032 1.1E-08 73.0 2.2 25 824-848 3-27 (198)
150 3kta_A Chromosome segregation 96.8 0.00044 1.5E-08 70.2 2.9 32 812-848 18-49 (182)
151 1zp6_A Hypothetical protein AT 96.8 0.0004 1.4E-08 70.9 2.5 25 824-848 8-32 (191)
152 3nwj_A ATSK2; P loop, shikimat 96.8 0.00019 6.4E-09 78.0 -0.3 51 789-847 16-70 (250)
153 1ixz_A ATP-dependent metallopr 96.7 0.0022 7.6E-08 68.7 7.8 35 808-848 38-72 (254)
154 1jbk_A CLPB protein; beta barr 96.7 0.0029 1E-07 63.1 8.2 117 825-952 43-165 (195)
155 2xau_A PRE-mRNA-splicing facto 96.7 0.0014 4.7E-08 82.2 6.8 128 825-956 109-260 (773)
156 2v1u_A Cell division control p 96.7 0.0022 7.6E-08 72.1 7.8 124 824-950 43-179 (387)
157 1xp8_A RECA protein, recombina 96.7 0.01 3.4E-07 67.9 13.1 122 824-949 73-212 (366)
158 3vaa_A Shikimate kinase, SK; s 96.7 0.00064 2.2E-08 70.4 2.6 39 806-848 10-48 (199)
159 4eun_A Thermoresistant glucoki 96.6 0.0024 8.3E-08 66.0 7.0 25 824-848 28-52 (200)
160 1sq5_A Pantothenate kinase; P- 96.6 0.00038 1.3E-08 77.6 0.9 25 824-848 79-103 (308)
161 2i1q_A DNA repair and recombin 96.6 0.0049 1.7E-07 68.7 9.7 28 824-851 97-124 (322)
162 1zu4_A FTSY; GTPase, signal re 96.6 0.013 4.3E-07 65.8 13.0 34 812-849 96-129 (320)
163 1kgd_A CASK, peripheral plasma 96.6 0.0008 2.7E-08 68.7 2.9 25 824-848 4-28 (180)
164 2qm8_A GTPase/ATPase; G protei 96.6 0.00061 2.1E-08 77.1 2.0 38 808-849 42-79 (337)
165 3kl4_A SRP54, signal recogniti 96.6 0.0039 1.3E-07 72.8 8.8 88 825-917 97-192 (433)
166 1njg_A DNA polymerase III subu 96.6 0.0097 3.3E-07 61.4 11.0 23 826-848 46-68 (250)
167 2q6t_A DNAB replication FORK h 96.5 0.01 3.5E-07 69.4 12.2 126 824-949 199-364 (444)
168 2ce7_A Cell division protein F 96.5 0.0071 2.4E-07 71.5 10.7 23 826-848 50-72 (476)
169 2j41_A Guanylate kinase; GMP, 96.5 0.001 3.5E-08 68.5 2.9 25 824-848 5-29 (207)
170 2p65_A Hypothetical protein PF 96.5 0.0049 1.7E-07 61.5 7.8 24 825-848 43-66 (187)
171 2bdt_A BH3686; alpha-beta prot 96.5 0.00081 2.8E-08 68.7 1.8 23 825-847 2-24 (189)
172 3bh0_A DNAB-like replicative h 96.5 0.021 7.3E-07 63.7 13.5 28 824-851 67-94 (315)
173 3k1j_A LON protease, ATP-depen 96.4 0.00059 2E-08 83.1 0.9 40 806-849 45-84 (604)
174 3kta_B Chromosome segregation 96.4 0.0065 2.2E-07 62.2 8.4 66 884-952 64-131 (173)
175 3cf0_A Transitional endoplasmi 96.4 0.0034 1.1E-07 69.5 6.2 25 824-848 48-72 (301)
176 2b8t_A Thymidine kinase; deoxy 96.4 0.0022 7.7E-08 68.4 4.6 110 824-947 11-125 (223)
177 3io5_A Recombination and repai 96.3 0.015 5.3E-07 65.0 11.3 122 824-949 28-173 (333)
178 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.013 4.5E-07 65.7 10.6 25 824-848 122-146 (331)
179 3b9p_A CG5977-PA, isoform A; A 96.3 0.0089 3E-07 65.4 9.0 23 825-847 54-76 (297)
180 2ius_A DNA translocase FTSK; n 96.2 0.0019 6.6E-08 76.9 3.7 24 825-848 167-190 (512)
181 2qgz_A Helicase loader, putati 96.2 0.0026 9E-08 70.9 4.4 26 825-850 152-177 (308)
182 3llm_A ATP-dependent RNA helic 96.2 0.0041 1.4E-07 66.1 5.6 25 825-849 76-100 (235)
183 3tau_A Guanylate kinase, GMP k 96.2 0.0019 6.5E-08 67.5 2.9 25 824-848 7-31 (208)
184 1kag_A SKI, shikimate kinase I 96.2 0.0017 5.9E-08 65.0 2.3 24 825-848 4-27 (173)
185 4a1f_A DNAB helicase, replicat 96.2 0.015 5.2E-07 65.7 10.2 116 824-947 45-165 (338)
186 3uie_A Adenylyl-sulfate kinase 96.1 0.0022 7.5E-08 66.4 3.1 36 810-849 14-49 (200)
187 1knq_A Gluconate kinase; ALFA/ 96.1 0.0022 7.4E-08 64.6 2.6 25 824-848 7-31 (175)
188 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0034 1.2E-07 62.5 3.8 22 826-847 24-45 (149)
189 2vp4_A Deoxynucleoside kinase; 96.0 0.0024 8.3E-08 67.8 2.8 25 824-848 19-43 (230)
190 1in4_A RUVB, holliday junction 95.9 0.0067 2.3E-07 68.2 6.0 23 826-848 52-74 (334)
191 2o5v_A DNA replication and rep 95.9 0.0028 9.6E-08 72.3 2.7 33 811-848 17-49 (359)
192 3t15_A Ribulose bisphosphate c 95.9 0.014 4.8E-07 64.4 8.1 24 825-848 36-59 (293)
193 1p9r_A General secretion pathw 95.8 0.003 1E-07 73.6 2.7 25 824-848 166-190 (418)
194 1svm_A Large T antigen; AAA+ f 95.8 0.0023 8E-08 73.5 1.7 36 809-848 157-192 (377)
195 2oap_1 GSPE-2, type II secreti 95.8 0.0014 4.9E-08 78.1 -0.2 36 809-848 248-283 (511)
196 2x8a_A Nuclear valosin-contain 95.8 0.0024 8.2E-08 70.0 1.5 35 808-848 33-67 (274)
197 1ypw_A Transitional endoplasmi 95.8 0.02 6.9E-07 72.0 10.0 25 824-848 237-261 (806)
198 3h4m_A Proteasome-activating n 95.7 0.013 4.3E-07 63.6 6.9 24 824-847 50-73 (285)
199 4e22_A Cytidylate kinase; P-lo 95.7 0.0039 1.3E-07 67.2 2.7 23 824-846 26-48 (252)
200 4fcw_A Chaperone protein CLPB; 95.7 0.018 6.1E-07 63.1 8.0 24 826-849 48-71 (311)
201 1q57_A DNA primase/helicase; d 95.6 0.054 1.8E-06 64.2 12.2 126 824-949 241-405 (503)
202 1rz3_A Hypothetical protein rb 95.5 0.0053 1.8E-07 63.7 2.9 25 824-848 21-45 (201)
203 3qks_A DNA double-strand break 95.5 0.007 2.4E-07 63.2 3.8 23 826-848 24-46 (203)
204 3bgw_A DNAB-like replicative h 95.5 0.094 3.2E-06 61.4 13.8 126 824-949 196-361 (444)
205 1lv7_A FTSH; alpha/beta domain 95.5 0.036 1.2E-06 59.3 9.3 23 826-848 46-68 (257)
206 3ney_A 55 kDa erythrocyte memb 95.5 0.0056 1.9E-07 64.1 2.7 24 824-847 18-41 (197)
207 3cmw_A Protein RECA, recombina 95.4 0.069 2.4E-06 71.6 13.3 122 824-949 731-870 (1706)
208 1nij_A Hypothetical protein YJ 95.4 0.0052 1.8E-07 68.7 2.3 23 826-848 5-27 (318)
209 1w1w_A Structural maintenance 95.4 0.019 6.4E-07 66.8 7.0 67 884-952 333-401 (430)
210 1w5s_A Origin recognition comp 95.3 0.051 1.7E-06 61.7 10.4 127 825-953 50-194 (412)
211 1u0l_A Probable GTPase ENGC; p 95.3 0.0054 1.8E-07 68.1 2.2 25 824-848 168-192 (301)
212 3dm5_A SRP54, signal recogniti 95.3 0.03 1E-06 65.5 8.5 89 825-918 100-196 (443)
213 2pez_A Bifunctional 3'-phospho 95.2 0.0069 2.4E-07 61.2 2.4 25 824-848 4-28 (179)
214 1iy2_A ATP-dependent metallopr 95.2 0.0056 1.9E-07 66.6 1.8 34 809-848 63-96 (278)
215 2yv5_A YJEQ protein; hydrolase 95.2 0.0072 2.5E-07 67.1 2.6 23 824-846 164-186 (302)
216 3auy_A DNA double-strand break 95.2 0.043 1.5E-06 62.5 9.1 51 902-956 302-353 (371)
217 2rcn_A Probable GTPase ENGC; Y 95.1 0.0071 2.4E-07 68.9 2.4 24 824-847 214-237 (358)
218 1w1w_A Structural maintenance 95.1 0.0083 2.8E-07 69.8 2.9 26 824-849 25-50 (430)
219 1jjv_A Dephospho-COA kinase; P 95.1 0.0072 2.5E-07 62.4 2.2 21 827-847 4-24 (206)
220 2if2_A Dephospho-COA kinase; a 95.1 0.0082 2.8E-07 61.8 2.5 21 827-847 3-23 (204)
221 3tqc_A Pantothenate kinase; bi 95.0 0.011 3.7E-07 66.5 3.3 23 826-848 93-115 (321)
222 1cke_A CK, MSSA, protein (cyti 94.9 0.0094 3.2E-07 62.3 2.6 23 825-847 5-27 (227)
223 1qhl_A Protein (cell division 94.9 0.0017 5.8E-08 69.5 -3.3 23 826-848 28-50 (227)
224 2e87_A Hypothetical protein PH 94.9 0.019 6.5E-07 65.1 5.0 23 826-848 168-190 (357)
225 2qby_B CDC6 homolog 3, cell di 94.8 0.072 2.5E-06 59.9 9.7 25 824-848 44-68 (384)
226 3cmu_A Protein RECA, recombina 94.8 0.11 3.7E-06 70.6 12.7 123 824-950 382-522 (2050)
227 2r8r_A Sensor protein; KDPD, P 94.8 0.018 6.2E-07 61.4 4.3 116 824-948 4-127 (228)
228 2qt1_A Nicotinamide riboside k 94.8 0.011 3.8E-07 61.2 2.6 24 824-847 20-43 (207)
229 2dy1_A Elongation factor G; tr 94.8 0.023 7.7E-07 70.0 5.8 116 824-951 8-139 (665)
230 3cmw_A Protein RECA, recombina 94.7 0.15 5.3E-06 68.3 13.8 123 824-950 382-522 (1706)
231 1t9h_A YLOQ, probable GTPase E 94.7 0.0051 1.7E-07 68.7 -0.4 25 824-848 172-196 (307)
232 4b4t_M 26S protease regulatory 94.7 0.064 2.2E-06 62.6 8.9 24 824-847 214-237 (434)
233 4b4t_L 26S protease subunit RP 94.6 0.092 3.1E-06 61.3 10.1 24 824-847 214-237 (437)
234 3m6a_A ATP-dependent protease 94.6 0.022 7.4E-07 68.5 5.0 26 824-849 107-132 (543)
235 3ice_A Transcription terminati 94.6 0.015 5.1E-07 66.8 3.3 34 813-850 166-199 (422)
236 1oix_A RAS-related protein RAB 94.6 0.012 4.3E-07 60.0 2.5 22 827-848 31-52 (191)
237 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.094 3.2E-06 55.7 9.4 23 825-847 39-61 (262)
238 2qor_A Guanylate kinase; phosp 94.5 0.013 4.5E-07 60.7 2.2 24 824-847 11-34 (204)
239 2zts_A Putative uncharacterize 94.4 0.085 2.9E-06 55.4 8.4 28 824-851 29-56 (251)
240 3co5_A Putative two-component 94.4 0.077 2.6E-06 51.8 7.5 22 826-847 28-49 (143)
241 2f9l_A RAB11B, member RAS onco 94.4 0.015 5E-07 59.6 2.3 22 827-848 7-28 (199)
242 3pfi_A Holliday junction ATP-d 94.3 0.093 3.2E-06 58.3 9.0 22 826-847 56-77 (338)
243 3d8b_A Fidgetin-like protein 1 94.3 0.09 3.1E-06 59.5 8.9 23 825-847 117-139 (357)
244 1y63_A LMAJ004144AAA protein; 94.3 0.019 6.6E-07 58.4 2.9 24 824-847 9-32 (184)
245 4b4t_K 26S protease regulatory 94.2 0.075 2.6E-06 61.9 8.2 25 824-848 205-229 (428)
246 1jr3_A DNA polymerase III subu 94.2 0.082 2.8E-06 59.2 8.2 23 826-848 39-61 (373)
247 2chg_A Replication factor C sm 94.2 0.17 5.8E-06 51.4 9.9 22 827-848 40-61 (226)
248 3t61_A Gluconokinase; PSI-biol 94.1 0.016 5.6E-07 59.6 2.0 24 825-848 18-41 (202)
249 2f1r_A Molybdopterin-guanine d 94.1 0.012 4.1E-07 60.0 1.0 23 826-848 3-25 (171)
250 4b4t_J 26S protease regulatory 94.0 0.069 2.4E-06 61.6 7.2 23 825-847 182-204 (405)
251 1j8m_F SRP54, signal recogniti 94.0 0.069 2.4E-06 59.2 7.0 25 825-849 98-122 (297)
252 4eaq_A DTMP kinase, thymidylat 94.0 0.25 8.7E-06 52.3 11.0 25 824-848 25-49 (229)
253 3cr8_A Sulfate adenylyltranfer 94.0 0.015 5.1E-07 70.0 1.6 25 824-848 368-392 (552)
254 3auy_A DNA double-strand break 93.9 0.023 7.9E-07 64.8 2.9 23 826-848 26-48 (371)
255 1sxj_D Activator 1 41 kDa subu 93.9 0.072 2.5E-06 59.2 6.8 23 827-849 60-82 (353)
256 1xwi_A SKD1 protein; VPS4B, AA 93.8 0.1 3.5E-06 58.3 7.8 24 825-848 45-68 (322)
257 3syl_A Protein CBBX; photosynt 93.7 0.22 7.4E-06 54.4 10.3 25 825-849 67-91 (309)
258 4ad8_A DNA repair protein RECN 93.7 0.013 4.3E-07 70.0 0.2 32 812-848 52-83 (517)
259 2ffh_A Protein (FFH); SRP54, s 93.7 0.2 6.7E-06 58.4 10.2 25 825-849 98-122 (425)
260 3cm0_A Adenylate kinase; ATP-b 93.7 0.021 7.2E-07 57.7 1.8 24 824-847 3-26 (186)
261 2orv_A Thymidine kinase; TP4A 93.6 0.25 8.5E-06 52.8 10.0 106 824-947 18-125 (234)
262 1qvr_A CLPB protein; coiled co 93.6 0.11 3.8E-06 65.7 8.6 114 826-950 192-311 (854)
263 4b4t_H 26S protease regulatory 93.6 0.1 3.4E-06 61.3 7.5 24 824-847 242-265 (467)
264 4b4t_I 26S protease regulatory 93.5 0.1 3.5E-06 60.7 7.4 24 825-848 216-239 (437)
265 3hu3_A Transitional endoplasmi 93.5 0.13 4.3E-06 61.1 8.4 22 826-847 239-260 (489)
266 3eie_A Vacuolar protein sortin 93.5 0.12 4E-06 57.5 7.7 24 825-848 51-74 (322)
267 2yvu_A Probable adenylyl-sulfa 93.5 0.028 9.6E-07 57.0 2.4 25 824-848 12-36 (186)
268 2qen_A Walker-type ATPase; unk 93.4 0.2 6.8E-06 55.2 9.4 22 826-847 32-53 (350)
269 3lxx_A GTPase IMAP family memb 93.4 0.043 1.5E-06 58.1 3.7 22 826-847 30-51 (239)
270 3cmu_A Protein RECA, recombina 93.4 0.28 9.7E-06 66.7 12.2 124 824-950 731-871 (2050)
271 1ypw_A Transitional endoplasmi 93.3 0.046 1.6E-06 68.8 4.5 26 824-849 510-535 (806)
272 2p67_A LAO/AO transport system 93.3 0.028 9.4E-07 63.5 2.2 36 809-848 44-79 (341)
273 2qp9_X Vacuolar protein sortin 93.2 0.16 5.5E-06 57.5 8.4 23 826-848 85-107 (355)
274 3pvs_A Replication-associated 93.2 0.15 5E-06 59.8 8.2 23 826-848 51-73 (447)
275 3kb2_A SPBC2 prophage-derived 93.2 0.033 1.1E-06 55.1 2.3 21 827-847 3-23 (173)
276 1d2n_A N-ethylmaleimide-sensit 93.1 0.08 2.7E-06 57.1 5.3 24 825-848 64-87 (272)
277 3t34_A Dynamin-related protein 93.0 0.11 3.8E-06 58.7 6.6 33 809-848 25-57 (360)
278 1q3t_A Cytidylate kinase; nucl 93.0 0.041 1.4E-06 58.3 2.8 24 824-847 15-38 (236)
279 1hqc_A RUVB; extended AAA-ATPa 92.9 0.3 1E-05 53.6 9.7 22 826-847 39-60 (324)
280 1qhx_A CPT, protein (chloramph 92.9 0.041 1.4E-06 55.0 2.5 23 825-847 3-25 (178)
281 2gj8_A MNME, tRNA modification 92.8 0.04 1.4E-06 55.1 2.3 24 824-847 3-26 (172)
282 2o5v_A DNA replication and rep 92.8 0.1 3.4E-06 59.5 5.8 59 884-947 265-330 (359)
283 3vfd_A Spastin; ATPase, microt 92.8 0.26 8.8E-06 56.3 9.3 23 825-847 148-170 (389)
284 1ni3_A YCHF GTPase, YCHF GTP-b 92.7 0.045 1.5E-06 63.1 2.8 25 824-848 19-43 (392)
285 1sxj_A Activator 1 95 kDa subu 92.6 0.095 3.2E-06 62.4 5.6 23 826-848 78-100 (516)
286 2bjv_A PSP operon transcriptio 92.6 0.16 5.5E-06 54.4 6.9 22 826-847 30-51 (265)
287 1m7g_A Adenylylsulfate kinase; 92.6 0.044 1.5E-06 57.0 2.3 25 824-848 24-48 (211)
288 2j9r_A Thymidine kinase; TK1, 92.5 0.15 5.1E-06 53.9 6.3 121 809-947 14-137 (214)
289 1odf_A YGR205W, hypothetical 3 92.5 0.052 1.8E-06 60.0 2.9 26 824-849 30-55 (290)
290 1kht_A Adenylate kinase; phosp 92.5 0.049 1.7E-06 54.9 2.5 23 825-847 3-25 (192)
291 3n70_A Transport activator; si 92.3 0.11 3.8E-06 50.7 4.7 22 826-847 25-46 (145)
292 2rhm_A Putative kinase; P-loop 92.3 0.054 1.9E-06 54.7 2.5 24 824-847 4-27 (193)
293 2www_A Methylmalonic aciduria 92.2 0.053 1.8E-06 61.4 2.6 24 825-848 74-97 (349)
294 1vht_A Dephospho-COA kinase; s 92.2 0.053 1.8E-06 56.4 2.3 23 825-847 4-26 (218)
295 1ojl_A Transcriptional regulat 92.2 0.27 9.2E-06 54.4 8.1 22 826-847 26-47 (304)
296 1tue_A Replication protein E1; 92.1 0.19 6.4E-06 53.0 6.3 23 826-848 59-81 (212)
297 3cf2_A TER ATPase, transitiona 92.0 0.33 1.1E-05 60.8 9.6 106 825-953 238-355 (806)
298 1xx6_A Thymidine kinase; NESG, 92.0 0.17 5.8E-06 52.4 5.9 109 824-948 7-118 (191)
299 2zan_A Vacuolar protein sortin 92.0 0.12 3.9E-06 60.5 5.1 24 825-848 167-190 (444)
300 1ly1_A Polynucleotide kinase; 91.9 0.06 2.1E-06 53.6 2.2 22 826-847 3-24 (181)
301 2wji_A Ferrous iron transport 91.8 0.059 2E-06 53.3 2.0 21 827-847 5-25 (165)
302 1via_A Shikimate kinase; struc 91.7 0.057 1.9E-06 54.2 1.9 21 827-847 6-26 (175)
303 2p5t_B PEZT; postsegregational 91.7 0.05 1.7E-06 58.5 1.5 24 824-847 31-54 (253)
304 3lw7_A Adenylate kinase relate 91.7 0.062 2.1E-06 52.8 2.1 19 827-845 3-21 (179)
305 1sky_E F1-ATPase, F1-ATP synth 91.6 0.17 5.9E-06 59.5 6.0 28 824-851 150-177 (473)
306 2vli_A Antibiotic resistance p 91.6 0.068 2.3E-06 53.6 2.3 24 824-847 4-27 (183)
307 1iqp_A RFCS; clamp loader, ext 91.6 0.21 7.1E-06 54.6 6.3 22 827-848 48-69 (327)
308 3iij_A Coilin-interacting nucl 91.6 0.068 2.3E-06 53.8 2.2 23 825-847 11-33 (180)
309 2a5y_B CED-4; apoptosis; HET: 91.5 0.29 9.8E-06 58.6 7.9 116 825-954 152-281 (549)
310 3uk6_A RUVB-like 2; hexameric 91.4 0.38 1.3E-05 53.8 8.5 25 824-848 69-93 (368)
311 1gvn_B Zeta; postsegregational 91.4 0.071 2.4E-06 58.7 2.4 24 824-847 32-55 (287)
312 2ze6_A Isopentenyl transferase 91.4 0.069 2.3E-06 57.6 2.2 21 827-847 3-23 (253)
313 1w4r_A Thymidine kinase; type 91.4 0.21 7E-06 52.1 5.7 107 824-950 19-129 (195)
314 1ex7_A Guanylate kinase; subst 91.3 0.065 2.2E-06 55.4 1.8 21 826-846 2-22 (186)
315 2wjg_A FEOB, ferrous iron tran 91.2 0.077 2.6E-06 53.1 2.2 22 826-847 8-29 (188)
316 1np6_A Molybdopterin-guanine d 91.1 0.085 2.9E-06 53.9 2.4 23 826-848 7-29 (174)
317 2c95_A Adenylate kinase 1; tra 91.1 0.091 3.1E-06 53.2 2.7 24 824-847 8-31 (196)
318 1a5t_A Delta prime, HOLB; zinc 91.1 0.48 1.6E-05 52.9 8.8 117 825-949 24-149 (334)
319 2v54_A DTMP kinase, thymidylat 91.1 0.09 3.1E-06 53.7 2.7 24 824-847 3-26 (204)
320 3u61_B DNA polymerase accessor 91.1 0.18 6.3E-06 55.6 5.3 23 825-847 48-70 (324)
321 1tev_A UMP-CMP kinase; ploop, 91.0 0.082 2.8E-06 53.3 2.2 23 825-847 3-25 (196)
322 1uf9_A TT1252 protein; P-loop, 91.0 0.092 3.1E-06 53.5 2.6 24 824-847 7-30 (203)
323 2jaq_A Deoxyguanosine kinase; 91.0 0.082 2.8E-06 53.8 2.2 21 827-847 2-22 (205)
324 2dhr_A FTSH; AAA+ protein, hex 90.9 0.089 3E-06 62.5 2.7 34 809-848 54-87 (499)
325 2wwf_A Thymidilate kinase, put 90.9 0.099 3.4E-06 53.7 2.7 24 824-847 9-32 (212)
326 2v3c_C SRP54, signal recogniti 90.9 0.28 9.5E-06 57.2 6.8 25 825-849 99-123 (432)
327 2plr_A DTMP kinase, probable t 90.8 0.092 3.2E-06 53.7 2.4 23 825-847 4-26 (213)
328 1sxj_C Activator 1 40 kDa subu 90.7 0.043 1.5E-06 61.4 -0.2 22 828-849 49-70 (340)
329 1nn5_A Similar to deoxythymidy 90.6 0.11 3.8E-06 53.4 2.8 24 824-847 8-31 (215)
330 3e2i_A Thymidine kinase; Zn-bi 90.4 0.17 5.9E-06 53.5 4.0 109 824-948 27-138 (219)
331 3trf_A Shikimate kinase, SK; a 90.4 0.11 3.8E-06 52.3 2.5 23 825-847 5-27 (185)
332 2zej_A Dardarin, leucine-rich 90.4 0.093 3.2E-06 52.8 1.9 21 827-847 4-24 (184)
333 3r20_A Cytidylate kinase; stru 90.0 0.12 4.1E-06 55.3 2.5 23 825-847 9-31 (233)
334 2z0h_A DTMP kinase, thymidylat 90.0 0.12 3.9E-06 52.5 2.3 21 827-847 2-22 (197)
335 1nks_A Adenylate kinase; therm 89.9 0.12 4.1E-06 51.9 2.3 21 827-847 3-23 (194)
336 1gtv_A TMK, thymidylate kinase 89.8 0.067 2.3E-06 55.1 0.3 21 827-847 2-22 (214)
337 2ga8_A Hypothetical 39.9 kDa p 89.8 0.094 3.2E-06 59.6 1.5 36 810-849 11-48 (359)
338 1ega_A Protein (GTP-binding pr 89.8 0.096 3.3E-06 57.9 1.6 24 825-848 8-31 (301)
339 3ake_A Cytidylate kinase; CMP 89.8 0.12 4.2E-06 52.7 2.3 21 827-847 4-24 (208)
340 1m2o_B GTP-binding protein SAR 89.6 0.14 4.8E-06 51.9 2.6 33 810-847 13-45 (190)
341 2bwj_A Adenylate kinase 5; pho 89.4 0.15 5.1E-06 51.7 2.5 23 825-847 12-34 (199)
342 1um8_A ATP-dependent CLP prote 89.3 0.42 1.4E-05 54.1 6.5 23 826-848 73-95 (376)
343 1qf9_A UMP/CMP kinase, protein 89.2 0.15 5E-06 51.3 2.3 23 825-847 6-28 (194)
344 1zd8_A GTP:AMP phosphotransfer 89.2 0.16 5.4E-06 53.3 2.6 24 824-847 6-29 (227)
345 3te6_A Regulatory protein SIR3 89.1 0.51 1.8E-05 52.8 6.8 119 824-952 44-177 (318)
346 3e1s_A Exodeoxyribonuclease V, 88.9 0.17 5.9E-06 61.1 3.0 24 825-848 204-227 (574)
347 3ld9_A DTMP kinase, thymidylat 88.9 0.54 1.9E-05 49.9 6.5 24 824-847 20-43 (223)
348 1a7j_A Phosphoribulokinase; tr 88.8 0.16 5.4E-06 56.0 2.4 23 825-847 5-27 (290)
349 1aky_A Adenylate kinase; ATP:A 88.7 0.18 6.1E-06 52.5 2.7 24 824-847 3-26 (220)
350 3fb4_A Adenylate kinase; psych 88.7 0.16 5.5E-06 52.5 2.3 21 827-847 2-22 (216)
351 1e6c_A Shikimate kinase; phosp 88.7 0.15 5.1E-06 50.6 1.9 21 827-847 4-24 (173)
352 3lv8_A DTMP kinase, thymidylat 88.6 0.56 1.9E-05 50.2 6.5 25 824-848 26-50 (236)
353 1zak_A Adenylate kinase; ATP:A 88.6 0.17 5.7E-06 52.9 2.3 23 825-847 5-27 (222)
354 1ukz_A Uridylate kinase; trans 88.6 0.17 5.9E-06 51.7 2.4 24 824-847 14-37 (203)
355 3pxg_A Negative regulator of g 88.5 0.32 1.1E-05 57.1 4.9 24 826-849 202-225 (468)
356 2pbr_A DTMP kinase, thymidylat 88.4 0.17 5.9E-06 50.9 2.2 21 827-847 2-22 (195)
357 2cdn_A Adenylate kinase; phosp 88.4 0.21 7.2E-06 51.1 2.9 24 824-847 19-42 (201)
358 3a4m_A L-seryl-tRNA(SEC) kinas 88.3 0.18 6.1E-06 54.4 2.4 23 825-847 4-26 (260)
359 2iyv_A Shikimate kinase, SK; t 88.1 0.17 5.8E-06 50.9 1.9 22 826-847 3-24 (184)
360 3dl0_A Adenylate kinase; phosp 88.1 0.19 6.4E-06 52.1 2.3 21 827-847 2-22 (216)
361 2pt5_A Shikimate kinase, SK; a 87.9 0.19 6.6E-06 49.5 2.2 21 827-847 2-22 (168)
362 1f6b_A SAR1; gtpases, N-termin 87.8 0.15 5.2E-06 52.1 1.3 34 809-847 14-47 (198)
363 1sxj_B Activator 1 37 kDa subu 87.7 0.74 2.5E-05 50.0 6.9 21 828-848 45-65 (323)
364 1z6t_A APAF-1, apoptotic prote 87.6 1.3 4.4E-05 53.0 9.5 116 825-953 147-272 (591)
365 2qag_A Septin-2, protein NEDD5 87.5 0.068 2.3E-06 60.8 -1.7 43 790-847 17-59 (361)
366 4ag6_A VIRB4 ATPase, type IV s 87.2 0.26 8.9E-06 56.2 3.0 24 826-849 36-59 (392)
367 2orw_A Thymidine kinase; TMTK, 87.1 0.27 9.4E-06 50.3 2.8 24 824-847 2-25 (184)
368 2xb4_A Adenylate kinase; ATP-b 87.1 0.23 7.8E-06 52.1 2.2 21 827-847 2-22 (223)
369 1xjc_A MOBB protein homolog; s 87.0 0.25 8.5E-06 50.3 2.4 22 826-847 5-26 (169)
370 1r6b_X CLPA protein; AAA+, N-t 86.9 0.46 1.6E-05 59.1 5.1 25 825-849 207-231 (758)
371 2j37_W Signal recognition part 86.7 1.4 4.9E-05 52.2 9.0 23 825-847 101-123 (504)
372 1zuh_A Shikimate kinase; alpha 86.7 0.26 9E-06 48.8 2.3 22 826-847 8-29 (168)
373 3cf2_A TER ATPase, transitiona 86.7 0.34 1.2E-05 60.7 3.8 23 825-847 511-533 (806)
374 3tlx_A Adenylate kinase 2; str 86.5 0.26 9E-06 52.5 2.4 24 824-847 28-51 (243)
375 2iut_A DNA translocase FTSK; n 86.4 0.62 2.1E-05 56.0 5.7 24 826-849 215-238 (574)
376 3zvl_A Bifunctional polynucleo 86.0 0.42 1.4E-05 55.3 3.9 24 824-847 257-280 (416)
377 1qvr_A CLPB protein; coiled co 85.9 0.35 1.2E-05 61.1 3.5 23 827-849 590-612 (854)
378 2f6r_A COA synthase, bifunctio 85.9 0.32 1.1E-05 53.1 2.7 22 825-846 75-96 (281)
379 1e4v_A Adenylate kinase; trans 85.8 0.31 1E-05 50.6 2.4 21 827-847 2-22 (214)
380 3k53_A Ferrous iron transport 85.8 0.29 9.9E-06 52.9 2.2 23 826-848 4-26 (271)
381 2grj_A Dephospho-COA kinase; T 85.7 0.3 1E-05 50.5 2.3 22 826-847 13-34 (192)
382 1ltq_A Polynucleotide kinase; 85.7 0.29 9.9E-06 53.4 2.2 22 826-847 3-24 (301)
383 2qtf_A Protein HFLX, GTP-bindi 85.7 0.27 9.1E-06 56.0 2.0 22 827-848 181-202 (364)
384 1mky_A Probable GTP-binding pr 85.7 0.28 9.7E-06 57.0 2.2 22 827-848 182-203 (439)
385 2ged_A SR-beta, signal recogni 85.5 0.39 1.3E-05 48.1 2.9 22 826-847 49-70 (193)
386 2c9o_A RUVB-like 1; hexameric 85.5 0.53 1.8E-05 55.0 4.4 25 824-848 62-86 (456)
387 1uj2_A Uridine-cytidine kinase 85.4 0.31 1.1E-05 52.0 2.3 23 825-847 22-44 (252)
388 3be4_A Adenylate kinase; malar 85.0 0.36 1.2E-05 50.3 2.4 24 824-847 4-27 (217)
389 1moz_A ARL1, ADP-ribosylation 84.9 0.33 1.1E-05 48.1 2.0 23 825-847 18-40 (183)
390 4edh_A DTMP kinase, thymidylat 84.7 0.37 1.3E-05 50.6 2.4 24 824-847 5-28 (213)
391 2dyk_A GTP-binding protein; GT 84.5 0.4 1.4E-05 46.2 2.4 21 827-847 3-23 (161)
392 2ce2_X GTPase HRAS; signaling 84.5 0.42 1.4E-05 45.9 2.5 21 827-847 5-25 (166)
393 1fzq_A ADP-ribosylation factor 84.4 0.39 1.3E-05 48.1 2.3 22 826-847 17-38 (181)
394 1w36_D RECD, exodeoxyribonucle 84.3 1 3.5E-05 54.7 6.3 24 825-848 164-187 (608)
395 3v9p_A DTMP kinase, thymidylat 84.1 0.41 1.4E-05 50.9 2.4 24 824-847 24-47 (227)
396 2lkc_A Translation initiation 84.0 0.48 1.6E-05 46.6 2.7 23 825-847 8-30 (178)
397 1z2a_A RAS-related protein RAB 84.0 0.44 1.5E-05 46.2 2.4 21 827-847 7-27 (168)
398 2qmh_A HPR kinase/phosphorylas 83.7 0.43 1.5E-05 49.9 2.3 22 825-846 34-55 (205)
399 2ocp_A DGK, deoxyguanosine kin 83.6 0.45 1.5E-05 50.3 2.5 23 825-847 2-24 (241)
400 1ak2_A Adenylate kinase isoenz 83.3 0.49 1.7E-05 49.8 2.7 23 825-847 16-38 (233)
401 1g16_A RAS-related protein SEC 83.3 0.46 1.6E-05 46.1 2.3 21 827-847 5-25 (170)
402 1ek0_A Protein (GTP-binding pr 83.3 0.45 1.5E-05 46.1 2.2 21 827-847 5-25 (170)
403 1vt4_I APAF-1 related killer D 83.2 3.4 0.00012 53.2 10.4 115 825-953 150-280 (1221)
404 1z0j_A RAB-22, RAS-related pro 83.2 0.45 1.5E-05 46.2 2.1 21 827-847 8-28 (170)
405 1kao_A RAP2A; GTP-binding prot 83.2 0.49 1.7E-05 45.6 2.4 21 827-847 5-25 (167)
406 4tmk_A Protein (thymidylate ki 83.2 0.52 1.8E-05 49.6 2.7 30 824-855 2-31 (213)
407 2dby_A GTP-binding protein; GD 83.2 0.85 2.9E-05 52.0 4.7 22 827-848 3-24 (368)
408 1ky3_A GTP-binding protein YPT 83.1 0.49 1.7E-05 46.5 2.4 21 827-847 10-30 (182)
409 1u8z_A RAS-related protein RAL 83.0 0.5 1.7E-05 45.5 2.4 21 827-847 6-26 (168)
410 2h92_A Cytidylate kinase; ross 83.0 0.44 1.5E-05 49.2 2.1 23 825-847 3-25 (219)
411 1z08_A RAS-related protein RAB 82.9 0.5 1.7E-05 45.9 2.3 21 827-847 8-28 (170)
412 2erx_A GTP-binding protein DI- 82.9 0.48 1.6E-05 46.0 2.2 21 827-847 5-25 (172)
413 1svi_A GTP-binding protein YSX 82.9 0.49 1.7E-05 47.4 2.3 22 826-847 24-45 (195)
414 2fv8_A H6, RHO-related GTP-bin 82.6 0.44 1.5E-05 48.7 1.8 37 807-847 11-47 (207)
415 1wms_A RAB-9, RAB9, RAS-relate 82.6 0.49 1.7E-05 46.4 2.1 21 827-847 9-29 (177)
416 3umf_A Adenylate kinase; rossm 82.5 0.51 1.7E-05 49.9 2.3 24 824-847 28-51 (217)
417 3pxi_A Negative regulator of g 82.5 1.6 5.6E-05 54.2 7.3 23 827-849 523-545 (758)
418 3pqc_A Probable GTP-binding pr 82.4 0.52 1.8E-05 47.0 2.3 22 826-847 24-45 (195)
419 3q72_A GTP-binding protein RAD 82.3 0.54 1.8E-05 45.6 2.3 21 827-847 4-24 (166)
420 1p5z_B DCK, deoxycytidine kina 82.2 0.54 1.9E-05 50.4 2.4 24 824-847 23-46 (263)
421 2nzj_A GTP-binding protein REM 82.2 0.51 1.7E-05 46.1 2.0 21 827-847 6-26 (175)
422 2fn4_A P23, RAS-related protei 82.0 0.59 2E-05 45.8 2.5 21 827-847 11-31 (181)
423 2cxx_A Probable GTP-binding pr 81.9 0.53 1.8E-05 46.8 2.1 21 827-847 3-23 (190)
424 1upt_A ARL1, ADP-ribosylation 81.9 0.59 2E-05 45.5 2.4 22 826-847 8-29 (171)
425 2ohf_A Protein OLA1, GTP-bindi 81.9 0.47 1.6E-05 54.7 1.9 24 825-848 22-45 (396)
426 1c1y_A RAS-related protein RAP 81.9 0.59 2E-05 45.2 2.4 21 827-847 5-25 (167)
427 2gno_A DNA polymerase III, gam 81.8 1.2 4.1E-05 49.3 5.1 108 826-957 19-132 (305)
428 3q85_A GTP-binding protein REM 81.6 0.59 2E-05 45.5 2.3 21 827-847 4-24 (169)
429 2y8e_A RAB-protein 6, GH09086P 81.2 0.66 2.3E-05 45.4 2.5 21 827-847 16-36 (179)
430 3tw8_B RAS-related protein RAB 81.1 0.6 2E-05 45.8 2.1 21 827-847 11-31 (181)
431 1r2q_A RAS-related protein RAB 81.1 0.65 2.2E-05 44.9 2.4 21 827-847 8-28 (170)
432 3pxi_A Negative regulator of g 81.0 0.96 3.3E-05 56.3 4.4 25 825-849 201-225 (758)
433 3exa_A TRNA delta(2)-isopenten 81.0 0.61 2.1E-05 52.1 2.3 23 825-847 3-25 (322)
434 3bc1_A RAS-related protein RAB 80.9 0.66 2.2E-05 46.0 2.4 21 827-847 13-33 (195)
435 4dsu_A GTPase KRAS, isoform 2B 80.9 0.61 2.1E-05 46.2 2.1 21 827-847 6-26 (189)
436 1z0f_A RAB14, member RAS oncog 80.9 0.67 2.3E-05 45.3 2.4 21 827-847 17-37 (179)
437 2a9k_A RAS-related protein RAL 80.8 0.67 2.3E-05 45.7 2.4 21 827-847 20-40 (187)
438 2oil_A CATX-8, RAS-related pro 80.7 0.66 2.3E-05 46.5 2.3 21 827-847 27-47 (193)
439 2bme_A RAB4A, RAS-related prot 80.6 0.7 2.4E-05 45.7 2.5 21 827-847 12-32 (186)
440 3b1v_A Ferrous iron uptake tra 80.6 0.59 2E-05 50.9 2.0 22 826-847 4-25 (272)
441 3ihw_A Centg3; RAS, centaurin, 80.5 0.68 2.3E-05 46.5 2.3 21 827-847 22-42 (184)
442 1m7b_A RND3/RHOE small GTP-bin 80.4 0.72 2.5E-05 46.0 2.5 21 827-847 9-29 (184)
443 3tmk_A Thymidylate kinase; pho 80.4 0.75 2.6E-05 48.5 2.7 24 824-847 4-27 (216)
444 1nrj_B SR-beta, signal recogni 80.4 0.81 2.8E-05 46.9 2.9 22 826-847 13-34 (218)
445 3con_A GTPase NRAS; structural 80.4 0.7 2.4E-05 46.1 2.4 21 827-847 23-43 (190)
446 3d3q_A TRNA delta(2)-isopenten 80.3 0.64 2.2E-05 52.5 2.3 22 826-847 8-29 (340)
447 1r8s_A ADP-ribosylation factor 80.2 0.73 2.5E-05 44.5 2.4 21 827-847 2-22 (164)
448 3clv_A RAB5 protein, putative; 80.2 0.71 2.4E-05 46.0 2.4 21 827-847 9-29 (208)
449 3t1o_A Gliding protein MGLA; G 80.2 0.72 2.5E-05 45.9 2.4 21 827-847 16-36 (198)
450 2hxs_A RAB-26, RAS-related pro 80.1 0.72 2.5E-05 45.2 2.3 21 827-847 8-28 (178)
451 3crm_A TRNA delta(2)-isopenten 80.1 0.65 2.2E-05 52.0 2.2 22 826-847 6-27 (323)
452 3upu_A ATP-dependent DNA helic 80.0 2.4 8.1E-05 49.4 7.1 21 827-847 47-67 (459)
453 2efe_B Small GTP-binding prote 79.6 0.76 2.6E-05 45.2 2.3 21 827-847 14-34 (181)
454 2g6b_A RAS-related protein RAB 79.4 0.79 2.7E-05 45.0 2.4 21 827-847 12-32 (180)
455 1r6b_X CLPA protein; AAA+, N-t 79.4 1.1 3.8E-05 55.6 4.2 23 827-849 490-512 (758)
456 1vg8_A RAS-related protein RAB 79.3 0.78 2.7E-05 46.3 2.4 21 827-847 10-30 (207)
457 2bov_A RAla, RAS-related prote 79.2 0.74 2.5E-05 46.4 2.2 21 827-847 16-36 (206)
458 3cbq_A GTP-binding protein REM 79.2 0.75 2.6E-05 46.8 2.2 21 827-847 25-45 (195)
459 3kkq_A RAS-related protein M-R 78.9 0.8 2.7E-05 45.3 2.3 21 827-847 20-40 (183)
460 2gf0_A GTP-binding protein DI- 78.9 0.8 2.7E-05 45.9 2.2 22 826-847 9-30 (199)
461 2fg5_A RAB-22B, RAS-related pr 78.8 0.86 2.9E-05 45.8 2.5 21 827-847 25-45 (192)
462 3t5g_A GTP-binding protein RHE 78.8 0.84 2.9E-05 45.0 2.4 21 827-847 8-28 (181)
463 3foz_A TRNA delta(2)-isopenten 78.7 0.76 2.6E-05 51.2 2.2 23 825-847 10-32 (316)
464 1mh1_A RAC1; GTP-binding, GTPa 78.7 0.86 2.9E-05 44.9 2.4 21 827-847 7-27 (186)
465 3sfz_A APAF-1, apoptotic pepti 78.7 3.5 0.00012 53.3 8.7 112 825-952 147-271 (1249)
466 3tkl_A RAS-related protein RAB 78.6 0.86 2.9E-05 45.5 2.4 21 827-847 18-38 (196)
467 2gf9_A RAS-related protein RAB 78.6 0.86 3E-05 45.5 2.4 21 827-847 24-44 (189)
468 3sr0_A Adenylate kinase; phosp 78.5 0.82 2.8E-05 47.7 2.3 21 827-847 2-22 (206)
469 4dcu_A GTP-binding protein ENG 78.5 1.1 3.9E-05 52.1 3.7 33 808-847 13-45 (456)
470 2xxa_A Signal recognition part 78.4 4.9 0.00017 46.7 9.0 24 824-847 99-122 (433)
471 1ksh_A ARF-like protein 2; sma 78.3 0.83 2.8E-05 45.4 2.2 22 826-847 19-40 (186)
472 3vkw_A Replicase large subunit 78.3 1.3 4.5E-05 51.7 4.1 24 824-847 160-183 (446)
473 2wsm_A Hydrogenase expression/ 78.3 0.89 3E-05 46.8 2.4 23 826-848 31-53 (221)
474 2h57_A ADP-ribosylation factor 78.2 0.79 2.7E-05 45.9 1.9 23 826-848 22-44 (190)
475 3dz8_A RAS-related protein RAB 77.9 0.96 3.3E-05 45.4 2.5 21 827-847 25-45 (191)
476 2ew1_A RAS-related protein RAB 77.6 0.97 3.3E-05 46.3 2.5 21 827-847 28-48 (201)
477 2r62_A Cell division protease 77.4 0.5 1.7E-05 50.5 0.2 22 827-848 46-67 (268)
478 2a5j_A RAS-related protein RAB 77.4 0.97 3.3E-05 45.3 2.3 21 827-847 23-43 (191)
479 3hjn_A DTMP kinase, thymidylat 77.4 3 0.0001 43.0 6.1 28 827-856 2-29 (197)
480 3oes_A GTPase rhebl1; small GT 77.4 1 3.4E-05 45.7 2.5 21 827-847 26-46 (201)
481 2cjw_A GTP-binding protein GEM 77.3 0.98 3.4E-05 45.7 2.4 21 827-847 8-28 (192)
482 2bcg_Y Protein YP2, GTP-bindin 77.2 1 3.5E-05 45.7 2.5 21 827-847 10-30 (206)
483 1zj6_A ADP-ribosylation factor 77.2 0.99 3.4E-05 45.0 2.4 23 825-847 16-38 (187)
484 1ofh_A ATP-dependent HSL prote 77.0 0.92 3.2E-05 49.0 2.2 23 826-848 51-73 (310)
485 2h17_A ADP-ribosylation factor 76.9 0.92 3.1E-05 45.1 2.0 22 826-847 22-43 (181)
486 3a8t_A Adenylate isopentenyltr 76.9 0.97 3.3E-05 50.9 2.4 23 825-847 40-62 (339)
487 1zcb_A G alpha I/13; GTP-bindi 76.9 1 3.4E-05 51.3 2.5 21 826-846 34-54 (362)
488 1z06_A RAS-related protein RAB 76.8 1 3.5E-05 45.0 2.4 21 827-847 22-42 (189)
489 2o52_A RAS-related protein RAB 76.8 0.99 3.4E-05 45.8 2.3 21 827-847 27-47 (200)
490 3bwd_D RAC-like GTP-binding pr 76.8 1.1 3.6E-05 44.2 2.4 22 826-847 9-30 (182)
491 1zd9_A ADP-ribosylation factor 76.8 1 3.6E-05 45.0 2.4 21 827-847 24-44 (188)
492 3reg_A RHO-like small GTPase; 76.8 1 3.6E-05 45.1 2.4 21 827-847 25-45 (194)
493 1x3s_A RAS-related protein RAB 76.6 1.1 3.7E-05 44.7 2.4 21 827-847 17-37 (195)
494 2hf9_A Probable hydrogenase ni 76.5 1 3.6E-05 46.4 2.4 23 826-848 39-61 (226)
495 1gwn_A RHO-related GTP-binding 76.5 1.1 3.7E-05 46.0 2.5 21 827-847 30-50 (205)
496 2atv_A RERG, RAS-like estrogen 76.4 1 3.4E-05 45.4 2.1 22 826-847 29-50 (196)
497 2xtp_A GTPase IMAP family memb 76.4 1 3.5E-05 47.9 2.3 22 826-847 23-44 (260)
498 2il1_A RAB12; G-protein, GDP, 76.3 0.95 3.3E-05 45.6 1.9 21 827-847 28-48 (192)
499 3lxw_A GTPase IMAP family memb 76.2 1 3.5E-05 48.1 2.2 22 826-847 22-43 (247)
500 1zbd_A Rabphilin-3A; G protein 76.2 1.1 3.6E-05 45.4 2.2 21 827-847 10-30 (203)
No 1
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=3e-131 Score=1254.94 Aligned_cols=783 Identities=35% Similarity=0.611 Sum_probs=572.6
Q ss_pred ccCCcccccCCCCCCcCCCCCCCCCCCCCcccccChhhhccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHh
Q 040956 229 DTTSKFEWLDPSKIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGH 308 (1085)
Q Consensus 229 ~~~~~~~~l~p~~irD~~gr~p~dp~YDp~Tl~iP~~~~~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaa 308 (1085)
..|++|+||+|++|||++||||+||+|||||||||+++|+++||||+|||+||++|||+||||||||||||||+||++||
T Consensus 27 ~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~a 106 (1022)
T 2o8b_B 27 WYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGV 106 (1022)
T ss_dssp CGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHH
T ss_pred cccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEEehhhHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccEEEecCCCCccccccCccCHHHHHHHHHHcCCeEEEEeecCChHHHhhcc--------CCCceeeeEEEEecCCc
Q 040956 309 KELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAKARH--------TNSVISRKLVNVVTPST 380 (1085)
Q Consensus 309 k~L~L~lT~~~~g~~~~aGfPe~sl~~y~~kLV~~GYKVAVVEQ~Et~~~~k~r~--------~~~vv~Rev~~V~TpGT 380 (1085)
++|||++|. +++||||||+|+++.|+++||++|||||||||+|||++++.|+ .+++|+||||+||||||
T Consensus 107 ~~L~i~lt~---~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT 183 (1022)
T 2o8b_B 107 SELGLVFMK---GNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGT 183 (1022)
T ss_dssp HHHCCCCCS---SSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTS
T ss_pred HhcCeEEec---CCCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEEEECCCe
Confidence 999999984 5799999999999999999999999999999999998754331 13799999999999999
Q ss_pred cccCCC---C--CCCceEEEEeecCCCCCCCCceEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCC
Q 040956 381 TVDGTI---G--PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGL 455 (1085)
Q Consensus 381 ~~d~~~---~--~~~~yllaI~E~~~~~~~~~~~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~l 455 (1085)
++|+.+ . ..++||+||.+.......+...||+||+|++||+|++++|.|+..+++|.+.|.+++|+|||++++.+
T Consensus 184 ~~d~~~~~~l~~~~~n~l~ai~~~~~~~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~Eil~~~~~~ 263 (1022)
T 2o8b_B 184 QTYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNL 263 (1022)
T ss_dssp CCCCTTSCCCSCSSCCEEEEEEEEECSCC-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEEEEEEETTTC
T ss_pred eecccccccccCCCCcEEEEEEEccccccCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCcEEEecCCcc
Confidence 999874 2 35789999987421111123579999999999999999999998899999999999999999998777
Q ss_pred CHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCCCCC-----Cchhhhhhhhc------------Cch
Q 040956 456 CKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS-----SPWSKALENVM------------QHD 518 (1085)
Q Consensus 456 s~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~~-----~~~~~~l~~~~------------~~~ 518 (1085)
+..+.+.++..... .+ ...+.+..+||+.......+....||.... ..|+..+..+. +..
T Consensus 264 ~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (1022)
T 2o8b_B 264 SKETKTILKSSLSC--SL-QEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSE 340 (1022)
T ss_dssp CHHHHHHHTTTTTT--SE-EEEECBTTTBCCHHHHHHHHHHTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECGGGH
T ss_pred chHHHHHHHhhhhh--hh-hhhcccchhhcchhhHHhhhhhhhhcccccccccchhhHHHHHHhhcchhhcccccccccH
Confidence 77666555432211 11 111122566787655444444457887542 23555543221 245
Q ss_pred hHHHHHHHHHHHHHHhcccccc-ccCCc---ccc--------------ccccccccccccee------------------
Q 040956 519 IGFSALGGLISHLSRLMLDDVL-RNGDI---LPY--------------KVYRDCLRMDGQTL------------------ 562 (1085)
Q Consensus 519 ~al~Alg~ll~YL~~~~l~~~l-~~~~~---~~~--------------~~~~~~m~lD~~Tl------------------ 562 (1085)
.+++|+|+||+||+.++++..+ ....+ .+. .....+|.||+.|+
T Consensus 341 ~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g~~~gSL 420 (1022)
T 2o8b_B 341 LALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTL 420 (1022)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCCHHHHHHTTCSSCCSSSSCCCSH
T ss_pred HHHHHHHHHHHHHHHhCcchhhhccccccccccccccccccccccccccCCCCeEEeCHHHHHhhcCCccCCCCCCCCcH
Confidence 7899999999999998754321 11111 111 12357899998877
Q ss_pred --ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhh-hhhh----c-
Q 040956 563 --YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKA-RVQA----S- 634 (1085)
Q Consensus 563 --~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~-~~~~----~- 634 (1085)
+||+|+|+||+||||+||++||+|++.|++|||+|++|+++..++..++..|+++|||||+++||+. .... .
T Consensus 421 l~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~ 500 (1022)
T 2o8b_B 421 LERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHP 500 (1022)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCG
T ss_pred HHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999976 2210 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhc-----cCcchhh-------hhcCC
Q 040956 635 SCIVLPLIGKKVLKQQVKVFGSLVKGLRIAMDL---------------LMLMHKEG-----HIIPSLS-------RIFKP 687 (1085)
Q Consensus 635 ~~~~l~~l~~~~l~~~i~~~~~l~~~l~~~~d~---------------l~~l~~~~-----~~i~~l~-------~~~~~ 687 (1085)
....+.+.......+.+..+...+.++.....+ +..+.... ..++.+. +.++.
T Consensus 501 ~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~ 580 (1022)
T 2o8b_B 501 DSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDH 580 (1022)
T ss_dssp GGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCH
T ss_pred hhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhccccccchHHHHHHHHHHHHHhCc
Confidence 000000000000111122222222222211111 11111000 0111111 11110
Q ss_pred ------Ccc---cC-CCcHHHHHHHHH-------Hh-------hc--------c---------------C-CC-------
Q 040956 688 ------PIF---DG-SDGLDKFLTQFE-------AA-------ID--------S---------------D-FP------- 712 (1085)
Q Consensus 688 ------~~l---~~-~~~l~~~l~~~e-------~~-------i~--------~---------------~-~~------- 712 (1085)
..+ .+ ...++++...+. .. +. . . ++
T Consensus 581 ~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~ 660 (1022)
T 2o8b_B 581 EKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKS 660 (1022)
T ss_dssp HHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEE
T ss_pred hhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEecCceEEEEEehhhhcccCCCceEEee
Confidence 000 00 112222211111 10 00 0 0 00
Q ss_pred ------cccccccchHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccce
Q 040956 713 ------DYQNHDVTDLD--------------AETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPL 772 (1085)
Q Consensus 713 ------~~~~~~i~~~~--------------~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~ 772 (1085)
+|.+.++.+.. .++...+.+.+.++...|..+.+++++|||++|+|.+|.....+||+|.
T Consensus 661 t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~ 740 (1022)
T 2o8b_B 661 TKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPV 740 (1022)
T ss_dssp ETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCE
T ss_pred eccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCccCCc
Confidence 11122221111 1122233344445677899999999999999999999974357899999
Q ss_pred ecCCCCCCcccCCCCCCEEEEEcceeeeeecCC-CCcccccccccCCCC---CCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 773 ILPQSKNPAVRQDNGGPVLKIKGLWHPFALGEN-GGLPVPNDILLGEDS---DDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~-~~~~V~ndisL~~~~---~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.+.. +..+.|+++++|||++.... ++.+|+||++|+... +...|++++||||||||||||||++|++
T Consensus 741 ~~~~~--------~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 741 ILLPE--------DTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp ECCTT--------TSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCC--------CCCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHH
Confidence 97421 11257999999999986432 567999999998751 0012789999999999999999999999
Q ss_pred HHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 040956 849 VILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928 (1085)
Q Consensus 849 ~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~a 928 (1085)
.+|+|+|+||||+.+.++++|.||+++|+.|++..+.|+|++||.+++.|+..+++++||||||||+|||+.||.+++++
T Consensus 813 ~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~ 892 (1022)
T 2o8b_B 813 AVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANA 892 (1022)
T ss_dssp HHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHH
T ss_pred HHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCC
Q 040956 929 VFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGV 1008 (1085)
Q Consensus 929 vle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGl 1008 (1085)
++++|.++.|+++||+|||++++..+++++.|.++||.+......+. ...+.+.|+|++.+|.|++|||++||+++|+
T Consensus 893 il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~--~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Gl 970 (1022)
T 2o8b_B 893 VVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECED--PSQETITFLYKFIKGACPKSYGFNAARLANL 970 (1022)
T ss_dssp HHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC---------------CEEEEEESSCCCCCHHHHHHHHTTC
T ss_pred HHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCccc--CCCCceEEEeeecCCCCCCCHHHHHHHHcCC
Confidence 99999876689999999999999999999999999998754321111 1346799999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 040956 1009 PQKVVEAASHAALAMKKSI 1027 (1085)
Q Consensus 1009 P~~vi~rA~~~~~~l~~~~ 1027 (1085)
|++||++|++++.++|+..
T Consensus 971 p~~vi~rA~~~~~~le~~~ 989 (1022)
T 2o8b_B 971 PEEVIQKGHRKAREFEKMN 989 (1022)
T ss_dssp CHHHHHHHHHHHHHTTSST
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=4.8e-118 Score=1118.31 Aligned_cols=737 Identities=28% Similarity=0.426 Sum_probs=528.6
Q ss_pred hccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEecCCCCccccccCccCHHHHHHHHHHcCCe
Q 040956 267 LKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYK 346 (1085)
Q Consensus 267 ~~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~~~g~~~~aGfPe~sl~~y~~kLV~~GYK 346 (1085)
.+++||||+|||+||++|||+||||||||||||||+||++||++|||++|.+ +++||||||+|+++.|++|||++|||
T Consensus 10 ~~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~--~~~pmaGvP~ha~~~yl~rLv~~G~k 87 (918)
T 3thx_B 10 KSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLD--HNFMTASIPTHRLFVHVRRLVAKGYK 87 (918)
T ss_dssp CTTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEE--TTEEEEEEEGGGHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCceeecC--CCeeEEeccHhHHHHHHHHHHHcCCc
Confidence 4579999999999999999999999999999999999999999999999976 57999999999999999999999999
Q ss_pred EEEEeecCChHHHhhcc-CCCceeeeEEEEecCCccccCCC---------------C--CCCceEEEEeecCCC---CCC
Q 040956 347 VGRIEQLETSEQAKARH-TNSVISRKLVNVVTPSTTVDGTI---------------G--PDAVHLLAIKEGNCG---PDN 405 (1085)
Q Consensus 347 VAVVEQ~Et~~~~k~r~-~~~vv~Rev~~V~TpGT~~d~~~---------------~--~~~~yllaI~E~~~~---~~~ 405 (1085)
||||||+|||++++.++ ++++|+|+||+||||||++|+++ . ..++||+||.+.... ...
T Consensus 88 Vai~eQ~E~p~~k~~~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~~~~~nyL~ai~~~~~~~~~~~~ 167 (918)
T 3thx_B 88 VGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKK 167 (918)
T ss_dssp EEEEEECSCHHHHTTSTTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSCTTSCCCEEEEEEEC--------
T ss_pred EEEEeccCChhhhhcccccCCceeeeEEEEECCCcccccccccccccccccccccccCCCCCcEEEEEEecccccccccc
Confidence 99999999998755432 34699999999999999999876 2 247899999875321 011
Q ss_pred CCceEEEEEEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhc---CCCceEeeecCccc
Q 040956 406 GSVVYGFAFVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSA---GSAALELTPAMAVT 482 (1085)
Q Consensus 406 ~~~~iGva~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~---~~~~~~~~~l~~~~ 482 (1085)
+...||+||+|+|||+|++++|.|+..++.|.+.|.+++|+|||++. .++....+.++.+.. ......+++++ .+
T Consensus 168 ~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 245 (918)
T 3thx_B 168 GNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVSVQDDRIRVERMD-NI 245 (918)
T ss_dssp -CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEES-SCCHHHHHHHHHHHHSSCSSSCCEEEEEC-GG
T ss_pred cCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeEEEecC-CcchHHHHHHHhhhcccccccceeEEecc-cc
Confidence 23479999999999999999999998899999999999999999997 466555554444321 11122334443 55
Q ss_pred ccCchHHHHHHHHHcccCCCCCCc--hhhhhhhh-cCchhHHHHHHHHHHHHHHhccccccccCC-cccccccccccccc
Q 040956 483 DFLDASEVKKLVQLNGYFNGSSSP--WSKALENV-MQHDIGFSALGGLISHLSRLMLDDVLRNGD-ILPYKVYRDCLRMD 558 (1085)
Q Consensus 483 ~f~~~~~~~~l~~~~~~f~~~~~~--~~~~l~~~-~~~~~al~Alg~ll~YL~~~~l~~~l~~~~-~~~~~~~~~~m~lD 558 (1085)
.|........+ ..+|...+.. ....+..+ .....+++|+|++++||+.++++..+.+.. +..|.....+|.||
T Consensus 246 ~f~~~~a~~~l---~~~f~~~~l~~~g~~~~~~~~~~~~~~~~A~gall~Yl~~~~~~~~l~~~~~~~~~~~~~~~m~LD 322 (918)
T 3thx_B 246 YFEYSHAFQAV---TEFYAKDTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTIN 322 (918)
T ss_dssp GTSHHHHHHHH---HHHCC--------------CCCCCHHHHHHHHHHHHHHHHTTCGGGGSCGGGEEESCCTTTBCEEC
T ss_pred ccChhHHHHHH---HHHhCccccccccchhhhhhhcccHHHHHHHHHHHHHHHHhcccccccccccceeecCCCCEEEEC
Confidence 66544333333 2455432210 11111111 123568899999999999988765444332 22343345789999
Q ss_pred ccee--------------------ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-hCcHHHHHHHHHhcCC
Q 040956 559 GQTL--------------------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLM-KNSEVVMVVAQYLRKL 617 (1085)
Q Consensus 559 ~~Tl--------------------~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~-~~~~~~~~l~~~L~~l 617 (1085)
+.|+ +||+|+||||+||||+||++||+|++.|++|||+|++|+ ++..++..++..|+++
T Consensus 323 ~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~~L~~i 402 (918)
T 3thx_B 323 GTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKL 402 (918)
T ss_dssp HHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHHTTTTC
T ss_pred HHHHHhcCCcccCCCCCCCCcHHHHHhhCCChHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHccC
Confidence 8887 999999999999999999999999999999999999997 4567888999999999
Q ss_pred CCHHHHHHHHhhhhhhcccch-h-hHHHH--HHHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHhccCcchhh-----
Q 040956 618 PDLERLLGRVKARVQASSCIV-L-PLIGK--KVLKQQVKVF-----GSLVKGLRIAM-DLLMLMHKEGHIIPSLS----- 682 (1085)
Q Consensus 618 pDlERll~ri~~~~~~~~~~~-l-~~l~~--~~l~~~i~~~-----~~l~~~l~~~~-d~l~~l~~~~~~i~~l~----- 682 (1085)
||+||+++|+.........+. + ..+.. ..+...+..+ ..++..+...+ +++..+......+....
T Consensus 403 ~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~~l~~~l~~~~~~~~~~lL~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (918)
T 3thx_B 403 PDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGD 482 (918)
T ss_dssp CCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHTGGGHHHHTTSCHHHHHHTC
T ss_pred ccHHHHHHHhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 999999999975422111000 0 00000 0000000000 00011110000 00000000000110000
Q ss_pred ------hhcCCCcccC-CCcHHHHHHHHH-------Hhhcc---------------------------CC---------C
Q 040956 683 ------RIFKPPIFDG-SDGLDKFLTQFE-------AAIDS---------------------------DF---------P 712 (1085)
Q Consensus 683 ------~~~~~~~l~~-~~~l~~~l~~~e-------~~i~~---------------------------~~---------~ 712 (1085)
.....|.+.. ...+..+...++ ..+.. .| .
T Consensus 483 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~ 562 (918)
T 3thx_B 483 KTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVS 562 (918)
T ss_dssp STTSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEE
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCee
Confidence 0000111100 001111111111 11110 01 0
Q ss_pred cccccccchH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCC
Q 040956 713 DYQNHDVTDL--------------DAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSK 778 (1085)
Q Consensus 713 ~~~~~~i~~~--------------~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~ 778 (1085)
+|.++++.+. +.+.+..+.+.+.+++..|..+.+++++|||++|+|.+|.. .+||||++.++
T Consensus 563 rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~-- 638 (918)
T 3thx_B 563 RFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTVQEE-- 638 (918)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCBCCEEESS--
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCCcccCC--
Confidence 1222222221 12233445566667788899999999999999999999975 68999999853
Q ss_pred CCcccCCCCCCEEEEEcceeeeeecC--CCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc
Q 040956 779 NPAVRQDNGGPVLKIKGLWHPFALGE--NGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC 856 (1085)
Q Consensus 779 ~~~~~~~~~~~~l~ik~lrhp~~~~~--~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~ 856 (1085)
..|.|+++|||+++.. .++.+||||++|+.. +|++++||||||||||||||+++++++++|+|+
T Consensus 639 ----------~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~----~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~ 704 (918)
T 3thx_B 639 ----------RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSED----SERVMIITGPNMGGKSSYIKQVALITIMAQIGS 704 (918)
T ss_dssp ----------CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTT----SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------CcEEEEeccchhhhhhhccCCceecccccccCC----CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc
Confidence 4799999999998632 246899999999986 689999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 040956 857 FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936 (1085)
Q Consensus 857 ~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~ 936 (1085)
|||+..+.++++|+||+++|+.|++..+.|+|+.||.+++.|++.+++|+||||||||+|||+.++.++++++++++.++
T Consensus 705 ~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~ 784 (918)
T 3thx_B 705 YVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD 784 (918)
T ss_dssp CBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cCceEEEEEechhHHHhhcCccc-eeeceeEEEEecCCCC-----cCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCH
Q 040956 937 INCRLLFATHYHPLTKEFASHPH-VTLQHMACAFKSNSEN-----YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQ 1010 (1085)
Q Consensus 937 ~~~tiL~aTH~~el~~~~~~~~~-V~~~~m~~~~~~~~~~-----~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~ 1010 (1085)
.|+++||+|||++++.....++. |.++||.+.++..... .....+.++|+|+|.+|+|++||||+||+++|+|+
T Consensus 785 ~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~ 864 (918)
T 3thx_B 785 VKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPG 864 (918)
T ss_dssp TCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCH
T ss_pred cCCeEEEEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCH
Confidence 69999999999999876666664 9999999875421000 00014579999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 040956 1011 KVVEAASHAALAMKKSIG 1028 (1085)
Q Consensus 1011 ~vi~rA~~~~~~l~~~~~ 1028 (1085)
+||+||++++.+||+..+
T Consensus 865 ~vi~rA~~~~~~LE~~~~ 882 (918)
T 3thx_B 865 EILKKAAHKSKELEGLIN 882 (918)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=4.2e-111 Score=1047.72 Aligned_cols=692 Identities=29% Similarity=0.434 Sum_probs=513.4
Q ss_pred hhcc---CCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEecCC---CCccccccCccCHHHHHHH
Q 040956 266 ALKK---MSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLSGV---GKCRQVGISESGIDDAVEK 339 (1085)
Q Consensus 266 ~~~k---~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~~~---g~~~~aGfPe~sl~~y~~k 339 (1085)
+|++ +||||+|||+||++|||+|||||||||||||++||+++|++|||++|.++. .++||||||+|+++.|+++
T Consensus 3 ~~~~~~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~ 82 (800)
T 1wb9_A 3 AIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAK 82 (800)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccccCCCCcCCccCCCHHHHHHHHHH
Confidence 5554 599999999999999999999999999999999999999999999998743 3689999999999999999
Q ss_pred HHHcCCeEEEEeecCChHHHhhccCCCceeeeEEEEecCCccccCCCCC--CCceEEEEeecCCCCCCCCceEEEEEEEc
Q 040956 340 LVARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIGP--DAVHLLAIKEGNCGPDNGSVVYGFAFVDC 417 (1085)
Q Consensus 340 LV~~GYKVAVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~~~~~--~~~yllaI~E~~~~~~~~~~~iGva~vD~ 417 (1085)
||++|||||||||+|+|+.+| ++|+|+|++|+||||++|+.+.+ .++||+||.+.. ..||+||+|+
T Consensus 83 Lv~~G~kVai~eQ~e~~~~~k-----~~v~R~v~~v~TpGT~~~~~~l~~~~~n~l~ai~~~~-------~~~Gla~~D~ 150 (800)
T 1wb9_A 83 LVNQGESVAICEQIGDPATSK-----GPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDS-------KGFGYATLDI 150 (800)
T ss_dssp HHHTTCCEEEEEECSCGGGCS-----SSCCEEEEEEECTTTCCCGGGSCTTSCCCEEEEEECS-------SCEEEEEECT
T ss_pred HHHCCCeEEEEEccCCccccC-----CcceEEEEEEecCCcccccccccCCCCcEEEEEEEcC-------CEEEEEEEEC
Confidence 999999999999999997544 69999999999999999987643 588999998732 3699999999
Q ss_pred CcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHHHc
Q 040956 418 AALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLN 497 (1085)
Q Consensus 418 STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~ 497 (1085)
+||+|++++|.| +++|.+.|.+++|+|||++.+..+. .+... . ..++.++ .+.|........+ .
T Consensus 151 stg~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~~----~l~~~---~--~~~~~~~-~~~f~~~~~~~~l---~ 214 (800)
T 1wb9_A 151 SSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAEM----SLIEG---R--RGLRRRP-LWEFEIDTARQQL---N 214 (800)
T ss_dssp TTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCCG----GGTTT---C--SSEEEEC-GGGGCHHHHHHHH---H
T ss_pred CCCEEEEEEecC---HHHHHHHHHhcCCeEEEEcCCCChH----HHhhc---c--cceEEcc-ccccChhHHHHHH---H
Confidence 999999999987 7899999999999999999764321 11110 1 1233443 5666644333333 2
Q ss_pred ccCCCCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee---------------
Q 040956 498 GYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL--------------- 562 (1085)
Q Consensus 498 ~~f~~~~~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl--------------- 562 (1085)
.+|...+ + ..+ ...+...+++|+|+|++||+..+... +.+...+.+....++|.||..|+
T Consensus 215 ~~~~~~~--l-~~~-~~~~~~~~~~a~gall~Yl~~~~~~~-~~~~~~~~~~~~~~~m~ld~~t~~~LEl~~~~~~~~~g 289 (800)
T 1wb9_A 215 LQFGTRD--L-VGF-GVENAPRGLCAAGCLLQYAKDTQRTT-LPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAEN 289 (800)
T ss_dssp HHHTCSC--S-GGG-TCTTCHHHHHHHHHHHHHHHHHHCSC-CTTCCCCEECCGGGBCEECHHHHHHTTSSSCTTSCSTT
T ss_pred HHhCccc--h-hhc-cccCcHHHHHHHHHHHHHHHHhhhhc-cccccccEEEccCCEEEecHHHHHhccCcccCCCCccc
Confidence 3454322 1 111 12245678999999999999987543 22222222222367888888775
Q ss_pred ----ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccch
Q 040956 563 ----YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIV 638 (1085)
Q Consensus 563 ----~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~~ 638 (1085)
++|+|+|+||+|+||+||++||+|++.|++|||+|++|++ ++..++..|+++||+||+++|+.........+.
T Consensus 290 SL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~---~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~ 366 (800)
T 1wb9_A 290 TLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD---FTAGLQPVLRQVGDLERILARLALRTARPRDLA 366 (800)
T ss_dssp SHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG---GHHHHHHHHHTTCSHHHHHHHHHHTCCCHHHHH
T ss_pred cHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHhcCCccHHHHHHHHHcCCCCHHHHH
Confidence 8899999999999999999999999999999999999998 788899999999999999999975321100000
Q ss_pred hhHHHH-----HHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHhcc-Ccc-hhhhhcCCCcccC-CCcHH--------
Q 040956 639 LPLIGK-----KVLKQQVKVF-GSLVKGLRIAM----DLLMLMHKEGH-IIP-SLSRIFKPPIFDG-SDGLD-------- 697 (1085)
Q Consensus 639 l~~l~~-----~~l~~~i~~~-~~l~~~l~~~~----d~l~~l~~~~~-~i~-~l~~~~~~~~l~~-~~~l~-------- 697 (1085)
.+.. ..+...+... ..++..+...+ ++...+.+.-. ..+ .+.+. +. ...+ ...++
T Consensus 367 --~l~~~l~~~~~l~~~l~~~~~~~L~~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~-~~-I~~g~~~eLd~lr~~~~~ 442 (800)
T 1wb9_A 367 --RMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAIIDTPPVLVRDG-GV-IASGYNEELDEWRALADG 442 (800)
T ss_dssp --HHHHHHTTHHHHHHHHHSCCCHHHHHHHHHHCCCHHHHHHHHHHBCSSCCSCSTTC-CC-BCTTSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcccHHHHHHHHHHHhCcCchhhhhcC-Ce-eCCCCCHHHHHHHHHHHH
Confidence 0000 0001111100 00111111111 11111111000 000 00000 00 0000 01111
Q ss_pred --HHHHHHHHh----h---------------------------ccCC---------Ccccccccch--------------
Q 040956 698 --KFLTQFEAA----I---------------------------DSDF---------PDYQNHDVTD-------------- 721 (1085)
Q Consensus 698 --~~l~~~e~~----i---------------------------~~~~---------~~~~~~~i~~-------------- 721 (1085)
.++.++... . +..| .+|.++++.+
T Consensus 443 ~~~~l~~~~~~~~~~~~~~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~ 522 (800)
T 1wb9_A 443 ATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALA 522 (800)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHHHHHHHHHHHHHHHHHHH
Confidence 111111110 0 0011 0122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeee
Q 040956 722 LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFA 801 (1085)
Q Consensus 722 ~~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~ 801 (1085)
.+.+++..+.+.+.++...|..+.+++++|||++|+|.+|.. .+||+|++.++ +.|.++++|||++
T Consensus 523 ~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~------------~~i~i~~~rHP~l 588 (800)
T 1wb9_A 523 LEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYT--LNYTCPTFIDK------------PGIRITEGRHPVV 588 (800)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCCEECSS------------SCEEEEEECCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccEECCC------------CCEEEEeccccEE
Confidence 123345556666777788999999999999999999999986 58999999743 4699999999998
Q ss_pred ecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCcccc
Q 040956 802 LGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI 881 (1085)
Q Consensus 802 ~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i 881 (1085)
+...++.+|+||++|+ . +|++++||||||||||||||+++++.+++|+|++||+..+.+++++++|+++|+.|++
T Consensus 589 e~~~~~~~vlndisl~-~----~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l 663 (800)
T 1wb9_A 589 EQVLNEPFIANPLNLS-P----QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDL 663 (800)
T ss_dssp HHHCSSCCCCEEEEEC-S----SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----
T ss_pred EccCCCceeeeccccc-C----CCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHH
Confidence 6433567999999998 4 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 882 MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 882 ~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
..+.|+|+.||.+++.++..+++++||||||||+|||+.|+.++++++++++.++.|+++||+|||++++......+.+.
T Consensus 664 ~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~ 743 (800)
T 1wb9_A 664 ASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVA 743 (800)
T ss_dssp ------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEE
T ss_pred HhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceE
Confidence 99999999999999999999999999999999999999999999999999998755899999999999987666678999
Q ss_pred eceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 040956 962 LQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025 (1085)
Q Consensus 962 ~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~ 1025 (1085)
++||.+... ++.++|+|+|.+|.+++|||++||+++|+|++||+||++++.++|+
T Consensus 744 n~~~~~~~~---------~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 744 NVHLDALEH---------GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798 (800)
T ss_dssp EEEEEEEEE---------TTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEc---------CCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 999987632 5679999999999999999999999999999999999999999874
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=8.9e-109 Score=1021.57 Aligned_cols=662 Identities=31% Similarity=0.434 Sum_probs=500.3
Q ss_pred ccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEec--CCCCccccccCccCHHHHHHHHHHcCC
Q 040956 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITLS--GVGKCRQVGISESGIDDAVEKLVARGY 345 (1085)
Q Consensus 268 ~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~~--~~g~~~~aGfPe~sl~~y~~kLV~~GY 345 (1085)
.++||||+|||+||++|||+|||||||||||||++||+++|++|||++|.| +.+++||||||+|+++.|+++||++||
T Consensus 11 ~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G~ 90 (765)
T 1ewq_A 11 GPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGF 90 (765)
T ss_dssp SCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEeccCCCCCCCceecCcHHHHHHHHHHHHHCCC
Confidence 368999999999999999999999999999999999999999999999987 224789999999999999999999999
Q ss_pred eEEEEeecCChHHHhhccCCCceeeeEEEEecCCccccCCCC-CCCceEEEEeecCCCCCCCCceEEEEEEEcCcceEEE
Q 040956 346 KVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDGTIG-PDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAALRVWV 424 (1085)
Q Consensus 346 KVAVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~~~~-~~~~yllaI~E~~~~~~~~~~~iGva~vD~STGef~l 424 (1085)
|||||||+|+|+.+| ++|+|+||+|+||||++|+++. ..++||+||.. ...||+||+|++||+|++
T Consensus 91 kVai~eQ~e~~~~~k-----g~v~R~v~~v~TpGT~~~~~~l~~~~n~l~ai~~--------~~~~Gla~~D~stg~~~~ 157 (765)
T 1ewq_A 91 RLAVADQVEPAEEAE-----GLVRREVTQLLTPGTLLQESLLPREANYLAAIAT--------GDGWGLAFLDVSTGEFKG 157 (765)
T ss_dssp CEEEEEECSCGGGCS-----SSCCEEEEEEECGGGCCCGGGSCSSCCCEEEEEE--------SSSEEEEEEETTTTEEEE
T ss_pred EEEEEecCCCccccc-----CceeEEEEEEEcCceecchhhcCCCCcEEEEEEe--------CCEEEEEEEECCCCEEEE
Confidence 999999999997654 5999999999999999998764 45889999982 126999999999999999
Q ss_pred EEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHHHHHcccCCCCC
Q 040956 425 GTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKLVQLNGYFNGSS 504 (1085)
Q Consensus 425 ~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l~~~~~~f~~~~ 504 (1085)
++|.|+ ++|.+.|.+++|+|||++.+ ++. +... +++.+ .+ |.. .. ...+|...
T Consensus 158 ~~~~d~---~~l~~~l~~~~P~Eil~~~~-~~~-----~~~~--------~~~~~-~~-f~~----~~---l~~~~~~~- 210 (765)
T 1ewq_A 158 TVLKSK---SALYDELFRHRPAEVLLAPE-LLE-----NGAF--------LDEFR-KR-FPV----ML---SEAPFEPE- 210 (765)
T ss_dssp EEESSH---HHHHHHHHHHCCSEEEECHH-HHH-----CHHH--------HHHHH-HH-CCS----EE---ECCCCCCC-
T ss_pred EEecCH---HHHHHHHHhcCCeEEEecCC-hHH-----HHHH--------hhhcc-cc-cCH----HH---HHHHhccc-
Confidence 999875 78999999999999999853 110 1110 01111 12 322 00 12344322
Q ss_pred CchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee-----------------ecccC
Q 040956 505 SPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL-----------------YLDSC 567 (1085)
Q Consensus 505 ~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl-----------------~Ln~t 567 (1085)
.+.+ ..+++|+|+|++||+..+..... ...+..+. ..++|.||.+|+ +||+|
T Consensus 211 --------~~~~-~~~~~a~g~ll~Yl~~~~~~~~~-~~~~~~~~-~~~~m~lD~~t~~~LEl~~~~~~~gsL~~~ld~t 279 (765)
T 1ewq_A 211 --------GEGP-LALRRARGALLAYAQRTQGGALS-LQPFRFYD-PGAFMRLPEATLRALEVFEPLRGQDTLFSVLDET 279 (765)
T ss_dssp --------SSSC-HHHHHHHHHHHHHHHHHHTSCCC-CCCCEECC-GGGSCBCCHHHHHHTTSSSCSSSCCCHHHHHCCC
T ss_pred --------ccCC-HHHHHHHHHHHHHHHHhhhcccc-cCCcEEEC-CCCeEEecHHHHHhCcCccCCCccchHHHHhCCC
Confidence 1223 67889999999999998754332 22222222 357788887665 68999
Q ss_pred CChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCHHHHHHHHhhhhhhcccc--------hh
Q 040956 568 VTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCI--------VL 639 (1085)
Q Consensus 568 ~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~~L~~lpDlERll~ri~~~~~~~~~~--------~l 639 (1085)
+|+||+|+||+||++||+|.+.|++|||+|++|.++..++..++..|++++|+||+++|+.........+ .+
T Consensus 280 ~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~ 359 (765)
T 1ewq_A 280 RTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQIL 359 (765)
T ss_dssp SSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987531100000 00
Q ss_pred hHHHHHH-----------HHHHHH-H------------------HHHHHHHHHHH----HHHHHHHHH---hccCcchhh
Q 040956 640 PLIGKKV-----------LKQQVK-V------------------FGSLVKGLRIA----MDLLMLMHK---EGHIIPSLS 682 (1085)
Q Consensus 640 ~~l~~~~-----------l~~~i~-~------------------~~~l~~~l~~~----~d~l~~l~~---~~~~i~~l~ 682 (1085)
+.+...+ +...+. . +..-+..++.. .+.+..+.. +...++.+.
T Consensus 360 ~~l~~~l~l~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~ 439 (765)
T 1ewq_A 360 PELRALLGEEVGLPDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLK 439 (765)
T ss_dssp HHHHHHHCTTSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 0000000 000000 0 00000011110 011111100 000111110
Q ss_pred ----hhcCCCcccCCCcHHHHHHHHHHhhccCC---------Ccccccccch--------------HHHHHHHHHHHHHH
Q 040956 683 ----RIFKPPIFDGSDGLDKFLTQFEAAIDSDF---------PDYQNHDVTD--------------LDAETLSILIELFI 735 (1085)
Q Consensus 683 ----~~~~~~~l~~~~~l~~~l~~~e~~i~~~~---------~~~~~~~i~~--------------~~~~~l~~l~~~~~ 735 (1085)
+.+++......... ..++.+| .+|.++++.+ .+.+++..+.+.+.
T Consensus 440 i~~~~~~gy~i~v~~~~~--------~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~ 511 (765)
T 1ewq_A 440 VGYNAVFGYYLEVTRPYY--------ERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAK 511 (765)
T ss_dssp EEEETTTEEEEEEEGGGG--------GGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccceeEEEEeehHhh--------hcCCcceEEEEeccCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000 0011111 1233322222 23345566777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccCCCCCCEEEEEcceeeeeecCCCCcccccccc
Q 040956 736 EKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQDNGGPVLKIKGLWHPFALGENGGLPVPNDIL 815 (1085)
Q Consensus 736 ~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~~~~~~~l~ik~lrhp~~~~~~~~~~V~ndis 815 (1085)
++...|..+.+++++||+++|+|.+|.. .+||+|.+ . ..|.++++|||+++. ++.+|+||++
T Consensus 512 ~~~~~l~~~~~~la~LD~l~s~a~~a~~--~~~~~P~~--~------------~~i~i~~~rHP~le~--~~~~vl~dis 573 (765)
T 1ewq_A 512 RQAEALREAARILAELDVYAALAEVAVR--YGYVRPRF--G------------DRLQIRAGRHPVVER--RTEFVPNDLE 573 (765)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCBCCEE--S------------SSEEEEEECCTTGGG--TSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHh--CCceeecc--C------------CcEEEEEeECceEcc--CCceEeeecc
Confidence 8888999999999999999999999975 47999999 2 359999999999865 4579999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHhHHH
Q 040956 816 LGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTET 895 (1085)
Q Consensus 816 L~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~el 895 (1085)
|+ |++++||||||||||||||+++++.+++|+|+++|+..+.+++++++|+++++.|++..+.|+|+.+|.++
T Consensus 574 l~-------g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 574 MA-------HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp ES-------SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHH
T ss_pred CC-------CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHH
Confidence 97 36999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeeceeEEEEecCCCC
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQHMACAFKSNSEN 975 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~~m~~~~~~~~~~ 975 (1085)
+.++..+++|+||||||||+||++.|+.+++++++++|.+ .|+++||+|||++++. ++ .+.+.++||.+..
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~-~~-~~~v~n~~~~~~~------ 717 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTA-LG-LPRLKNLHVAARE------ 717 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHT-CC-CTTEEEEEEEEEC------
T ss_pred HHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hh-hhcceEEEEEEEE------
Confidence 9999999999999999999999999999988999999987 5999999999999976 44 7899999998762
Q ss_pred cCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 040956 976 YSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMKK 1025 (1085)
Q Consensus 976 ~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~~ 1025 (1085)
.++.++|+|+|.+|.+++|||++||+++|+|++||+||++++.++|+
T Consensus 718 ---~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 718 ---EAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAA 764 (765)
T ss_dssp ---CSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred ---cCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 35679999999999999999999999999999999999999999874
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=8.1e-101 Score=965.19 Aligned_cols=719 Identities=26% Similarity=0.413 Sum_probs=520.5
Q ss_pred ccCCHHHHHHHHHhhhCCCeEEEEeeCCeEEEehhhHHHHhhccccEEEe-----c-CCCCccccccCccCHHHHHHH-H
Q 040956 268 KKMSASQKQYWNVKSQYMDVLLFFKVGKFYELYELDAEIGHKELDWKITL-----S-GVGKCRQVGISESGIDDAVEK-L 340 (1085)
Q Consensus 268 ~k~TP~~kQyweIK~k~~D~VLFFkvGkFYEly~~DA~iaak~L~L~lT~-----~-~~g~~~~aGfPe~sl~~y~~k-L 340 (1085)
.+.||||+|||++|++|+|+|+||++|||||+|++||+.+|++|+++++. . +...+++++||.+.++.|+++ |
T Consensus 14 ~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~L 93 (934)
T 3thx_A 14 AAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLL 93 (934)
T ss_dssp HHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhhhhhccCCCCCCCCCeeeeCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999986432 1 224688999999999999998 9
Q ss_pred HHcCCeEEEEeecCChHHHhhccCCCceeeeEEEEecCCccccC-CC---CC---CCceEEEEeecCCCCCCCCceEEEE
Q 040956 341 VARGYKVGRIEQLETSEQAKARHTNSVISRKLVNVVTPSTTVDG-TI---GP---DAVHLLAIKEGNCGPDNGSVVYGFA 413 (1085)
Q Consensus 341 V~~GYKVAVVEQ~Et~~~~k~r~~~~vv~Rev~~V~TpGT~~d~-~~---~~---~~~yllaI~E~~~~~~~~~~~iGva 413 (1085)
+.+||||+||||.++++. ++.++|+|++++||||+++. ++ .. .++||+||++... ++...||+|
T Consensus 94 l~~g~rVei~~q~~~~~~------~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~---~~~~~~Gla 164 (934)
T 3thx_A 94 LVRQYRVEVYKNRAGNKA------SKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAV---DGQRQVGVG 164 (934)
T ss_dssp HTTCCEEEEEEECC----------CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCS---SSSCEEEEE
T ss_pred HHcCCEEEEEecCCcccc------cCccceEEEEEECCCcHHHHHHHhhccccccccceEEEEEEeec---CCCcEEEEE
Confidence 999999999999777531 24799999999999999973 22 12 2689999998432 245689999
Q ss_pred EEEcCcceEEEEEecCcchHHHHHHHHHhcCCcEEEEcCCCCCHHHHHHHHHhhcCCCceEeeecCcccccCchHHHHHH
Q 040956 414 FVDCAALRVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMAVTDFLDASEVKKL 493 (1085)
Q Consensus 414 ~vD~STGef~l~~f~DD~~~s~L~t~L~~~~P~EII~~~~~ls~~~~k~l~~~~~~~~~~~~~~l~~~~~f~~~~~~~~l 493 (1085)
|+|++||+|++++|.|+..+++|.+.|.+++|+|||++.+..+.+..+ +...... ..+.+++.+ .++|........+
T Consensus 165 ~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~-l~~~~~~-~~~~~~~~~-~~~f~~~~~~~~l 241 (934)
T 3thx_A 165 YVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGK-LRQIIQR-GGILITERK-KADFSTKDIYQDL 241 (934)
T ss_dssp EEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHH-HHHHHHH-HTCEEEEEC-GGGGCCSSHHHHH
T ss_pred EEECCCCeEEEEecCCchHHHHHHHHHHhCCCeEEEeeCCCCcccHHH-HHHHHhh-cCceEEecc-hhhcCHHHHHHHH
Confidence 999999999999999999999999999999999999998765543322 2221100 122344444 5677654444444
Q ss_pred HHHcccCCCCCCchhhhhhhhcCchhHHHHHHHHHHHHHHhccccccccCCccccccccccccccccee-----------
Q 040956 494 VQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVLRNGDILPYKVYRDCLRMDGQTL----------- 562 (1085)
Q Consensus 494 ~~~~~~f~~~~~~~~~~l~~~~~~~~al~Alg~ll~YL~~~~l~~~l~~~~~~~~~~~~~~m~lD~~Tl----------- 562 (1085)
.....++...... ...+. ..+.+.+++|+|+||+||+..+....+....+..+. ...+|.||+.|+
T Consensus 242 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~a~gall~Yl~~~~~~~~~~~~~~~~~~-~~~~m~lD~~t~~nLEl~~~~~~ 318 (934)
T 3thx_A 242 NRLLKGKKGEQMN-SAVLP-EMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFD-FSQYMKLDIAAVRALNLFQGSVE 318 (934)
T ss_dssp HHHBCCCTTSCCC-GGGCG-GGGCHHHHHHHHHHHHHHTGGGCGGGTTCBEEEECC-GGGBCEECHHHHHHTTSCC----
T ss_pred HHHhccccccccc-ccccc-ccccHHHHHHHHHHHHHHHHhcCccccccccceEEc-CCCeEEeCHHHHhhccccccCCC
Confidence 3333332211100 11111 124568899999999999987643322222222222 356788887666
Q ss_pred ----------ecccCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhCcHHHHHHHH-HhcCCCCHHHHHHHHhhhh
Q 040956 563 ----------YLDSCVTSSGKRLLRSWICHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQ-YLRKLPDLERLLGRVKARV 631 (1085)
Q Consensus 563 ----------~Ln~t~T~~GkRlLr~Wl~~PL~d~~~I~~R~daVe~L~~~~~~~~~l~~-~L~~lpDlERll~ri~~~~ 631 (1085)
+||+|+||||+||||+||++||+|++.|++|||+|++|+++..++..++. .|+++||+||+++|++...
T Consensus 319 ~~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~ 398 (934)
T 3thx_A 319 DTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQA 398 (934)
T ss_dssp -----CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTC
T ss_pred CCCCCCcHHHHhccCCCHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999997 6999999999999997532
Q ss_pred hhcc--------cchhhHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHH----HHHhccCcchhhhhcCCCcccC-C
Q 040956 632 QASS--------CIVLPLIGKKVLKQQV----KVFGS-LVKGLRIAMDLLML----MHKEGHIIPSLSRIFKPPIFDG-S 693 (1085)
Q Consensus 632 ~~~~--------~~~l~~l~~~~l~~~i----~~~~~-l~~~l~~~~d~l~~----l~~~~~~i~~l~~~~~~~~l~~-~ 693 (1085)
.... ...+|.+... +...- ..+.. +...+...++.+.. +...-.. .....-. .-...+ .
T Consensus 399 ~~~~dl~~l~~~l~~~~~l~~~-l~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~-~~~~~g~-~~i~~g~~ 475 (934)
T 3thx_A 399 ANLQDCYRLYQGINQLPNVIQA-LEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDM-DQVENHE-FLVKPSFD 475 (934)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHH-HHHTCCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCT-TGGGTTC-CCBCTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHhcccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhCc-chhhcCC-ceeCCCCC
Confidence 1100 0011111110 00000 00000 00001111111111 1100000 0000000 000000 0
Q ss_pred CcHHH----------HHHHHH----Hhh--------------------------------ccCC---------Ccccccc
Q 040956 694 DGLDK----------FLTQFE----AAI--------------------------------DSDF---------PDYQNHD 718 (1085)
Q Consensus 694 ~~l~~----------~l~~~e----~~i--------------------------------~~~~---------~~~~~~~ 718 (1085)
..+++ .+..+. +.. ..+| .+|.+++
T Consensus 476 ~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~e 555 (934)
T 3thx_A 476 PNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSK 555 (934)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECHH
Confidence 00110 111100 000 0011 1233322
Q ss_pred cch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhcCCCcccceecCCCCCCcccC
Q 040956 719 VTD--------------LDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVTASMSSGAMHRPLILPQSKNPAVRQ 784 (1085)
Q Consensus 719 i~~--------------~~~~~l~~l~~~~~~~~~~~~~~~~~ia~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~~ 784 (1085)
+.+ .+.+++..+.+.+.++...|..+.+++++||||+|+|.+|.....+||||.+.+.+.
T Consensus 556 l~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~~------ 629 (934)
T 3thx_A 556 LTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQ------ 629 (934)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTTS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCCC------
Confidence 222 234456667777777888999999999999999999999986557899999985321
Q ss_pred CCCCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccc
Q 040956 785 DNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCV 864 (1085)
Q Consensus 785 ~~~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~ 864 (1085)
..|.++++|||+++...+..+||||++|+.. .|++++||||||||||||||+++++.+|+|+|+|||+..+.
T Consensus 630 ----~~i~i~~~rHP~le~~~~~~~v~ndisl~~~----~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~ 701 (934)
T 3thx_A 630 ----GRIILKASRHACVEVQDEIAFIPNDVYFEKD----KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE 701 (934)
T ss_dssp ----CEEEEEEECCTTTTTC--CCCCCEEEEEETT----TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE
T ss_pred ----cceEeecCccchhhhcCCceeecccceeecC----CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 5799999999998765456899999999986 68999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEE
Q 040956 865 LSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944 (1085)
Q Consensus 865 i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~a 944 (1085)
++++|+||+++|+.|++..+.|+|+.||.+++.|++.+++++||||||||+|||+.++.++++++++++.++.|+++||+
T Consensus 702 ~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a 781 (934)
T 3thx_A 702 VSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781 (934)
T ss_dssp EECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred chHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987669999999
Q ss_pred EechhHHHhhcCccceeeceeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 040956 945 THYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMAGVPQKVVEAASHAALAMK 1024 (1085)
Q Consensus 945 TH~~el~~~~~~~~~V~~~~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~laGlP~~vi~rA~~~~~~l~ 1024 (1085)
|||++++......+.+.++||.+..+ .+.+.|+|++.+|.+..|||++||+++|+|++||++|++++.++|
T Consensus 782 TH~~el~~lad~~~~v~ng~v~~~~~---------~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le 852 (934)
T 3thx_A 782 THFHELTALANQIPTVNNLHVTALTT---------EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELE 852 (934)
T ss_dssp ESCGGGGGGGGTCTTEEEEEEEEEEE---------TTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHhcccceeEeeEEEEEec---------CCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999998777788999999987643 567999999999999999999999999999999999999999998
Q ss_pred Hhh
Q 040956 1025 KSI 1027 (1085)
Q Consensus 1025 ~~~ 1027 (1085)
+..
T Consensus 853 ~~~ 855 (934)
T 3thx_A 853 EFQ 855 (934)
T ss_dssp TTT
T ss_pred hcc
Confidence 653
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.76 E-value=2.4e-18 Score=190.21 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=116.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
++|+++|+.+.|- +...+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 6 ~~l~i~~ls~~y~----~~~~~L~~isl~i~----~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 6 YILKVEELNYNYS----DGTHALKGINMNIK----RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEEECT----TSCEEEEEEEEEEE----TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHH
T ss_pred cEEEEEEEEEEEC----CCCeEEEeeEEEEc----CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccc
Confidence 5799999999881 23459999999998 79999999999999999999997643
Q ss_pred ----HHhhccccccccc----cccchHH---------------------HHHHHcCCccccccccchhhHH---hHHHHH
Q 040956 850 ----ILAQLGCFVPCEM----CVLSLAD---------------------TIFTRLGATDRIMTGESTFLVE---CTETAS 897 (1085)
Q Consensus 850 ----ilaqiG~~VPa~~----a~i~~~d---------------------~I~trig~~D~i~~~~Stf~~E---m~ela~ 897 (1085)
+..++| |||+.. ...++.+ .++.++|..+......++++.+ ...+|+
T Consensus 78 ~~~~~~~~ig-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 78 GIMKLRESIG-IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHHHHSEE-EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred cHHHHhCcEE-EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 112466 788753 1223333 3455666655444444444444 445777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+| +.+|+++|||||++|.|+.....+ ..++..+.++.|.|+|++||+++++..++++..
T Consensus 157 aL--~~~P~lLlLDEPts~LD~~~~~~i-~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~ 215 (275)
T 3gfo_A 157 VL--VMEPKVLILDEPTAGLDPMGVSEI-MKLLVEMQKELGITIIIATHDIDIVPLYCDNVF 215 (275)
T ss_dssp HH--TTCCSEEEEECTTTTCCHHHHHHH-HHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEE
T ss_pred HH--HcCCCEEEEECccccCCHHHHHHH-HHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEE
Confidence 77 999999999999999998776554 456667762338999999999999988887643
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.76 E-value=1.5e-18 Score=190.94 Aligned_cols=160 Identities=19% Similarity=0.137 Sum_probs=117.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
++|+++++.+.| ++..+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 10 ~~l~~~~l~~~~-----~~~~vL~~vsl~i~----~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHV-----QQQALINDVSLHIA----SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEE----TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH
T ss_pred ceEEEEeEEEEe-----CCeeEEEeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH
Confidence 589999999998 56789999999998 79999999999999999999997653
Q ss_pred --HHhhcccccccccc---ccch-------------------HHHHHHHcCCccccccc---cchhhHHhHHHHHHHHhC
Q 040956 850 --ILAQLGCFVPCEMC---VLSL-------------------ADTIFTRLGATDRIMTG---ESTFLVECTETASVLQKA 902 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a---~i~~-------------------~d~I~trig~~D~i~~~---~Stf~~Em~ela~iL~~a 902 (1085)
+...+| |+|+... .+++ ++.++.++|..+..... +|..+.....+|++| +
T Consensus 81 ~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL--~ 157 (266)
T 4g1u_C 81 KALARTRA-VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL--A 157 (266)
T ss_dssp HHHHHHEE-EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH--H
T ss_pred HHHhheEE-EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH--h
Confidence 112234 6666431 1222 33456667765544444 444444445577777 6
Q ss_pred C------CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 903 T------QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 903 t------~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
. +|+|+|||||++|+|+.....+ ..++..+.++.++++|++||+.+++..++++..+.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i-~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHT-LRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHH-HHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHH-HHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 6 9999999999999998876554 45666776654679999999999999888875443
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=3.3e-18 Score=187.23 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=115.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
+.|+++|+...| ++..+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 14 ~~l~i~~l~~~y-----~~~~vl~~vsl~i~----~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 14 GAVVVKDLRKRI-----GKKEILKGISFEIE----EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CCEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHH
T ss_pred CeEEEEEEEEEE-----CCEEEEEeeEEEEc----CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHH
Confidence 579999999888 45689999999998 79999999999999999999997653
Q ss_pred -HHhhcccccccccc---ccch---------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHHh
Q 040956 850 -ILAQLGCFVPCEMC---VLSL---------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQK 901 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a---~i~~---------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~ 901 (1085)
+..++| |||+... .+++ ++.++..+|..+......++++.+ ...+|++|
T Consensus 85 ~~~~~i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL-- 161 (256)
T 1vpl_A 85 EVRKLIS-YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL-- 161 (256)
T ss_dssp HHHTTEE-EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH--
T ss_pred HHhhcEE-EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH--
Confidence 112455 7777532 1122 223455666655444444444444 44567777
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+.+|+|+|||||++|+|+..... .+.++..+.++ |.++|++||+.+++..++++.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~-l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v 216 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNARE-VRKILKQASQE-GLTILVSSHNMLEVEFLCDRI 216 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHH-HHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEE
T ss_pred HcCCCEEEEeCCccccCHHHHHH-HHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEE
Confidence 89999999999999999877555 44566666654 899999999999988877754
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.76 E-value=3.1e-18 Score=195.42 Aligned_cols=160 Identities=23% Similarity=0.216 Sum_probs=119.5
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 4 ~l~i~~ls~~y-----~~~~~L~~vsl~i~----~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSF-----QNTPVLNDISLSLD----PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEc----CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 68999999998 56789999999998 799999999999999999999987541
Q ss_pred ----Hhhccccccccccc---cch---------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMCV---LSL---------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a~---i~~---------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL 899 (1085)
..++| |||+..+- +++ ++.++..+|..+......++++++ ...+|++|
T Consensus 75 ~~~~~r~ig-~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 75 LPVRERRLG-YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CCGGGSCCE-EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cchhhCCEE-EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 12355 67765432 222 234556667665544444444444 44577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+.+|+|+|||||++|+|+.....+...+.+ +.++.|.|+|++|||.+++..++++..+..
T Consensus 154 --~~~P~lLLLDEPts~LD~~~r~~l~~~l~~-~~~~~g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 154 --APDPELILLDEPFSALDEQLRRQIREDMIA-ALRANGKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --TTCCSEEEEESTTTTSCHHHHHHHHHHHHH-HHHHTTCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --HcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HHHhCCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 999999999999999998876665544444 444458999999999999999998765553
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.75 E-value=3.5e-18 Score=183.34 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=113.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+.+.| ++..+++|++|.+. +|++++|+||||||||||||+++++.-
T Consensus 3 ~~l~~~~l~~~y-----~~~~~l~~vsl~i~----~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 3 EILRAENIKKVI-----RGYEILKGISLSVK----KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEE----TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCH
T ss_pred cEEEEEeEEEEE-----CCEeeEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence 468999999988 45679999999998 799999999999999999999976430
Q ss_pred ------H-hhccccccccccc---cch---------------------HHHHHHHcCCccccccccchhhHHhH---HHH
Q 040956 851 ------L-AQLGCFVPCEMCV---LSL---------------------ADTIFTRLGATDRIMTGESTFLVECT---ETA 896 (1085)
Q Consensus 851 ------l-aqiG~~VPa~~a~---i~~---------------------~d~I~trig~~D~i~~~~Stf~~Em~---ela 896 (1085)
. .++| |||+.... +++ ++.++..+|..+......++++.+++ .+|
T Consensus 74 ~~~~~~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 74 KELSLLRNRKLG-FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp HHHHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhCcEE-EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 1 2466 77775321 122 22345566665544444445555444 466
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|+++|||||++|.|+..... ...++..+.++ |.++|++||+.+++ .++++.
T Consensus 153 ral--~~~p~lllLDEPt~~LD~~~~~~-~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v 209 (224)
T 2pcj_A 153 RAL--ANEPILLFADEPTGNLDSANTKR-VMDIFLKINEG-GTSIVMVTHERELA-ELTHRT 209 (224)
T ss_dssp HHT--TTCCSEEEEESTTTTCCHHHHHH-HHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEE
T ss_pred HHH--HcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEE
Confidence 666 89999999999999999776544 44566677666 89999999999887 566643
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.75 E-value=4.4e-18 Score=194.29 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=122.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
++|+++|+.+.|-.. .+...+++|++|++. +|++++|+||||||||||||+++++.
T Consensus 23 ~mi~v~~ls~~y~~~-~~~~~aL~~vsl~i~----~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 23 HMIKLSNITKVFHQG-TRTIQALNNVSLHVP----AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp CCEEEEEEEEEEECS-SSEEEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred ceEEEEeEEEEeCCC-CCCeEEEEeeEEEEc----CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 689999999988321 112468999999998 79999999999999999999997653
Q ss_pred -----HHhhccccccccccc---cch---------------------HHHHHHHcCCccccccccchhhHHh---HHHHH
Q 040956 850 -----ILAQLGCFVPCEMCV---LSL---------------------ADTIFTRLGATDRIMTGESTFLVEC---TETAS 897 (1085)
Q Consensus 850 -----ilaqiG~~VPa~~a~---i~~---------------------~d~I~trig~~D~i~~~~Stf~~Em---~ela~ 897 (1085)
+..++| |||+.... +++ ++.++..+|..+......+.+++++ ..+|+
T Consensus 98 ~~~~~~r~~Ig-~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 98 SELTKARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHHHTTEE-EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCcEE-EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 123466 88876421 222 2335666777665554445555544 44777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+| +.+|+|+|||||++|+|+.....+ ..++..+.++.|.|+|++||+++++..++++..+.
T Consensus 177 AL--~~~P~lLLlDEPTs~LD~~~~~~i-~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl 237 (366)
T 3tui_C 177 AL--ASNPKVLLCDQATSALDPATTRSI-LELLKDINRRLGLTILLITHEMDVVKRICDCVAVI 237 (366)
T ss_dssp HT--TTCCSEEEEESTTTTSCHHHHHHH-HHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred HH--hcCCCEEEEECCCccCCHHHHHHH-HHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 77 899999999999999998876554 45677776666899999999999999999875544
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.75 E-value=6e-18 Score=185.84 Aligned_cols=157 Identities=19% Similarity=0.263 Sum_probs=115.3
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------H-----
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------I----- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------i----- 850 (1085)
++|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+++++. +
T Consensus 23 ~~l~i~~l~~~y-----~~~~vL~~vsl~i~----~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 23 QMIDVHQLKKSF-----GSLEVLKGINVHIR----EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp CSEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTC
T ss_pred heEEEEeEEEEE-----CCEEEEEeeEEEEc----CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccc
Confidence 369999999988 45679999999998 79999999999999999999997643 1
Q ss_pred -----Hhhcccccccccc---ccchH----------------------HHHHHHcCCccccccccchhhHHh---HHHHH
Q 040956 851 -----LAQLGCFVPCEMC---VLSLA----------------------DTIFTRLGATDRIMTGESTFLVEC---TETAS 897 (1085)
Q Consensus 851 -----laqiG~~VPa~~a---~i~~~----------------------d~I~trig~~D~i~~~~Stf~~Em---~ela~ 897 (1085)
..++| |||+... .+++. +.++..+|..+......++++.++ ..+|+
T Consensus 94 ~~~~~~~~i~-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 94 NLNKVREEVG-MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp CHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cHHHHhCcEE-EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 12355 7777532 11222 234555665544444444444444 44677
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+| +.+|+|+|||||++|.|+..... ...++..+.++ |.++|++||+.+++..++++..
T Consensus 173 aL--~~~p~lllLDEPts~LD~~~~~~-~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~ 230 (263)
T 2olj_A 173 AL--AMEPKIMLFDEPTSALDPEMVGE-VLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVL 230 (263)
T ss_dssp HH--TTCCSEEEEESTTTTSCHHHHHH-HHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEE
T ss_pred HH--HCCCCEEEEeCCcccCCHHHHHH-HHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEE
Confidence 77 89999999999999999776554 44566677665 8999999999999988887643
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.74 E-value=6.3e-18 Score=185.03 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=114.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+++++.-
T Consensus 6 ~~l~i~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 6 EILRTENIVKYF-----GEFKALDGVSISVN----KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEECCEEE----TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred cEEEEeeeEEEE-----CCEeeEeeeEEEEe----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 579999999988 45679999999998 799999999999999999999976430
Q ss_pred ----Hhhcccccccccc---ccch----------------------------------HHHHHHHcCCccccccccchhh
Q 040956 851 ----LAQLGCFVPCEMC---VLSL----------------------------------ADTIFTRLGATDRIMTGESTFL 889 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~----------------------------------~d~I~trig~~D~i~~~~Stf~ 889 (1085)
..++| |||+... .+++ ++.++..+|..+......++++
T Consensus 77 ~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 77 AELYHYGIV-RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp HHHHHHTEE-ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHHhCCEE-EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 12355 6776431 1111 2234555665544444444444
Q ss_pred HH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 890 VE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 890 ~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
.+ ...+|++| +.+|+++|||||++|.|+..... ...++..+.++ |.++|++||+.+++..++++..
T Consensus 156 gGqkQrv~iAraL--~~~p~lllLDEPts~LD~~~~~~-l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 156 GGQMKLVEIGRAL--MTNPKMIVMDEPIAGVAPGLAHD-IFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp HHHHHHHHHHHHH--HTCCSEEEEESTTTTCCHHHHHH-HHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEE
T ss_pred HHHHHHHHHHHHH--HcCCCEEEEeCCccCCCHHHHHH-HHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEE
Confidence 44 44466667 89999999999999999877555 44566667665 8999999999999888887543
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.74 E-value=8.2e-18 Score=193.16 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=120.5
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~l~~~~l~~~y-----g~~~~L~~vsl~i~----~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAW-----GEVVVSKDINLDIH----EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEC----CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH
Confidence 48999999999 56789999999998 799999999999999999999987641
Q ss_pred Hhhccccccccccc---cchH---------------------HHHHHHcCCccccccccchhh---HHhHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMCV---LSLA---------------------DTIFTRLGATDRIMTGESTFL---VECTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a~---i~~~---------------------d~I~trig~~D~i~~~~Stf~---~Em~ela~iL~~at 903 (1085)
...+| ||+++.+- +++. +.++..+|..+......+.++ .....+|++| +.
T Consensus 74 ~r~ig-~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL--~~ 150 (381)
T 3rlf_A 74 ERGVG-MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL--VA 150 (381)
T ss_dssp GSCEE-EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHH--HH
T ss_pred HCCEE-EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHH--Hc
Confidence 12355 77776432 2222 235566676555444444444 4445577777 88
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+|+|+|||||++|+|+.....+ ...+..+.++.|.|+|++|||.+++..++++..|..
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l-~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~ 208 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 208 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHH-HHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCCEEEEECCCcCCCHHHHHHH-HHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 9999999999999998776554 445666666569999999999999999998866554
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.74 E-value=6.8e-18 Score=185.33 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=115.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------H-----
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------I----- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------i----- 850 (1085)
++|+++|+.+.| ++..|++|++|++. +|++++|+||||||||||||+++++. +
T Consensus 5 ~~l~i~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 5 NKLHVIDLHKRY-----GGHEVLKGVSLQAR----AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CCEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEEC
T ss_pred ceEEEeeEEEEE-----CCEEEEEeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccc
Confidence 469999999988 45679999999998 79999999999999999999997643 1
Q ss_pred ----------------Hhhcccccccccc---ccchH----------------------HHHHHHcCCccc-cccccchh
Q 040956 851 ----------------LAQLGCFVPCEMC---VLSLA----------------------DTIFTRLGATDR-IMTGESTF 888 (1085)
Q Consensus 851 ----------------laqiG~~VPa~~a---~i~~~----------------------d~I~trig~~D~-i~~~~Stf 888 (1085)
..++| |||+... .+++. +.++.++|..+. .....+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred ccccccccChhhHHHHhcceE-EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence 11355 7776531 11222 234556666554 44444444
Q ss_pred hHH---hHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 889 LVE---CTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 889 ~~E---m~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.+ ...+|++| +.+|+|+|||||++|.|+..... ...++..+.++ |.|+|++||+.+++..++++..
T Consensus 155 SgGq~qRv~lAraL--~~~p~lllLDEPts~LD~~~~~~-~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~ 224 (262)
T 1b0u_A 155 SGGQQQRVSIARAL--AMEPDVLLFDEPTSALDPELVGE-VLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVI 224 (262)
T ss_dssp CHHHHHHHHHHHHH--HTCCSEEEEESTTTTSCHHHHHH-HHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEE
T ss_pred CHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHH-HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 444 44467777 89999999999999999877554 44566677665 8999999999999988887643
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=5.9e-18 Score=183.45 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=112.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+++++.-
T Consensus 5 ~~l~~~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 5 IVLEVQSLHVYY-----GAIHAIKGIDLKVP----RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEE----TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred ceEEEEeEEEEE-----CCeeEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCH
Confidence 579999999888 45679999999998 799999999999999999999976530
Q ss_pred ----Hhhcccccccccc---ccchHH--------------------HHHHHcC-Ccccc---ccccchhhHHhHHHHHHH
Q 040956 851 ----LAQLGCFVPCEMC---VLSLAD--------------------TIFTRLG-ATDRI---MTGESTFLVECTETASVL 899 (1085)
Q Consensus 851 ----laqiG~~VPa~~a---~i~~~d--------------------~I~trig-~~D~i---~~~~Stf~~Em~ela~iL 899 (1085)
..++| |||+... .+++.+ .++.+++ ..+.. ...+|..+.....+|++|
T Consensus 76 ~~~~~~~i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 76 HVINRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHHHTTEE-EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCEE-EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 11255 7776531 112222 3344442 33222 233444444455577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.+|+|+|||||++|.|+.....+ ..++..+.++ |.++|++||+.+.+..++++..
T Consensus 155 --~~~p~lllLDEPts~LD~~~~~~l-~~~l~~~~~~-g~tvi~vtHd~~~~~~~~d~v~ 210 (240)
T 1ji0_A 155 --MSRPKLLMMDEPSLGLAPILVSEV-FEVIQKINQE-GTTILLVEQNALGALKVAHYGY 210 (240)
T ss_dssp --TTCCSEEEEECTTTTCCHHHHHHH-HHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEE
T ss_pred --HcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999998775554 4566666654 8999999999998888887643
No 17
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.74 E-value=1.6e-17 Score=179.56 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=111.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+.+.|-... ....+++|++|.+. +|++++|+||||||||||||+++++.-
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~----~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIK----EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEEC----TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHH
Confidence 67888888873110 02469999999998 799999999999999999999976430
Q ss_pred -----Hhhccccccccccc---cchHHH------------------------HHHHcCCcccc----ccccchhhHHhHH
Q 040956 851 -----LAQLGCFVPCEMCV---LSLADT------------------------IFTRLGATDRI----MTGESTFLVECTE 894 (1085)
Q Consensus 851 -----laqiG~~VPa~~a~---i~~~d~------------------------I~trig~~D~i----~~~~Stf~~Em~e 894 (1085)
..++| |||+.... +++.+. ++..+|..+.. ...+|..+.....
T Consensus 77 ~~~~~~~~i~-~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 77 LTKIRRDKIG-FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHHEE-EECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHHhhccEE-EEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 11366 78775421 223332 34455654432 3344444444555
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+|++| +.+|+++|||||++|+|+.....+ ..++..+.++.|.|+|++||+.+++ .++++..
T Consensus 156 iAral--~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~ 216 (235)
T 3tif_A 156 IARAL--ANNPPIILADQPTWALDSKTGEKI-MQLLKKLNEEDGKTVVVVTHDINVA-RFGERII 216 (235)
T ss_dssp HHHHH--TTCCSEEEEESTTTTSCHHHHHHH-HHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEE
T ss_pred HHHHH--HcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEE
Confidence 77777 999999999999999998776554 4566666654589999999999965 5666543
No 18
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.74 E-value=8.1e-18 Score=183.79 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=114.8
Q ss_pred CEEEEEcceeeeeecCCC-CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhcccccc
Q 040956 789 PVLKIKGLWHPFALGENG-GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVP 859 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~-~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VP 859 (1085)
++|+++|+.+.| + +..+++|++|.+. +|++++|+||||||||||||+++++.- ..++| |||
T Consensus 3 ~~l~i~~l~~~y-----~~~~~vl~~isl~i~----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~-~v~ 72 (253)
T 2nq2_C 3 KALSVENLGFYY-----QAENFLFQQLNFDLN----KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIG-FVP 72 (253)
T ss_dssp EEEEEEEEEEEE-----TTTTEEEEEEEEEEE----TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEE-EEC
T ss_pred ceEEEeeEEEEe-----CCCCeEEEEEEEEEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEE-EEc
Confidence 368999999888 4 5679999999998 799999999999999999999987631 12344 676
Q ss_pred cccc---ccch-------------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEE
Q 040956 860 CEMC---VLSL-------------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLV 908 (1085)
Q Consensus 860 a~~a---~i~~-------------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLv 908 (1085)
+... .+++ ++.++..+|..+......++++.+ ...+|++| +.+|+|+
T Consensus 73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL--~~~p~ll 150 (253)
T 2nq2_C 73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAI--ASECKLI 150 (253)
T ss_dssp SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH--HTTCSEE
T ss_pred CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHH--HcCCCEE
Confidence 6421 1111 233556667655444444444444 44467777 8999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 909 ILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 909 LLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
|||||++|.|+.....+ ..++..+.++.|.++|++||+.+++..++++..
T Consensus 151 lLDEPts~LD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~ 200 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIV-LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTL 200 (253)
T ss_dssp EESSSSTTSCHHHHHHH-HHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEE
T ss_pred EEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999997775554 445566655448899999999999988887643
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.73 E-value=2.6e-17 Score=188.10 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=118.6
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYF-----GKVKAVDGVSFEVK----DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEE-----CCEEEEeeeEEEEc----CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh
Confidence 48899999988 45679999999997 789999999999999999999987641
Q ss_pred Hhhccccccccccc---cch---------------------HHHHHHHcCCccccccccchhhHHh---HHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMCV---LSL---------------------ADTIFTRLGATDRIMTGESTFLVEC---TETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a~---i~~---------------------~d~I~trig~~D~i~~~~Stf~~Em---~ela~iL~~at 903 (1085)
..++| |||+..+- +++ ++.++..+|..+......++++.++ ..+|++| +.
T Consensus 74 ~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL--~~ 150 (359)
T 2yyz_A 74 YREVG-MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARAL--VK 150 (359)
T ss_dssp GTTEE-EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH--TT
T ss_pred hCcEE-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH--Hc
Confidence 12355 67765421 122 3345666776655444444555444 4477777 99
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+|+++|||||++|+|+.....+. ..+..+.++.|.|+|++|||.+.+..++++..+..
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~ 208 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN 208 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 99999999999999977765544 45556655558999999999999988888765544
No 20
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.72 E-value=1.9e-17 Score=188.81 Aligned_cols=164 Identities=17% Similarity=0.169 Sum_probs=119.3
Q ss_pred CCCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------
Q 040956 787 GGPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI---------------- 850 (1085)
Q Consensus 787 ~~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i---------------- 850 (1085)
+.+.|+++|+.+.|- ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 11 ~~~~l~~~~l~~~y~----g~~~vl~~vsl~i~----~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 11 GSMTIEFVGVEKIYP----GGARSVRGVSFQIR----EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL 82 (355)
T ss_dssp CCEEEEEEEEEECCT----TSTTCEEEEEEEEE----TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC
T ss_pred CCceEEEEEEEEEEc----CCCEEEeeeEEEEC----CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC
Confidence 336899999988771 34579999999998 789999999999999999999987541
Q ss_pred ---Hhhccccccccccc---cch---------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHH
Q 040956 851 ---LAQLGCFVPCEMCV---LSL---------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQ 900 (1085)
Q Consensus 851 ---laqiG~~VPa~~a~---i~~---------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~ 900 (1085)
..++| |||+..+. +++ ++.++..+|..+......++++.+ ...+|++|
T Consensus 83 ~~~~r~ig-~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL- 160 (355)
T 1z47_A 83 PPQKRNVG-LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL- 160 (355)
T ss_dssp CGGGSSEE-EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-
T ss_pred ChhhCcEE-EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH-
Confidence 12355 67765422 122 233556666655444444445444 44577777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+.+|+++|||||++|+|+.....+ ...+..+.++.|.|+|++|||.+++..++++..+..
T Consensus 161 -~~~P~lLLLDEP~s~LD~~~r~~l-~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 220 (355)
T 1z47_A 161 -APRPQVLLFDEPFAAIDTQIRREL-RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH 220 (355)
T ss_dssp -TTCCSEEEEESTTCCSSHHHHHHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred -HcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 999999999999999997775554 445566665558999999999999998888765543
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.72 E-value=1.4e-17 Score=189.62 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=115.7
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------H
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------L 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------l 851 (1085)
|+++|+.+.| ++. +++|++|++. +|++++|+||||||||||||+|+++.- .
T Consensus 2 l~~~~l~~~y-----~~~-~l~~vsl~i~----~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKW-----KNF-SLDNLSLKVE----SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEEC-----SSC-EEEEEEEEEC----TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEE-----CCE-EEeeeEEEEc----CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhh
Confidence 6788988888 345 9999999998 789999999999999999999987541 1
Q ss_pred hhccccccccccc---cch------------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcE
Q 040956 852 AQLGCFVPCEMCV---LSL------------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSL 907 (1085)
Q Consensus 852 aqiG~~VPa~~a~---i~~------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sL 907 (1085)
.++| |||+..+. +++ ++.++..+|..+......++++.+ ...+|++| +.+|+|
T Consensus 72 r~ig-~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL--~~~P~l 148 (348)
T 3d31_A 72 HDIA-FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARAL--VTNPKI 148 (348)
T ss_dssp HTCE-EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHT--TSCCSE
T ss_pred CcEE-EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH--HcCCCE
Confidence 2455 77776432 222 233455666554444444444444 44566666 899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+|||||++|+|+.....+ ...+..+.++.|.|+|++|||.+.+..++++..+..
T Consensus 149 LLLDEP~s~LD~~~~~~l-~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~ 202 (348)
T 3d31_A 149 LLLDEPLSALDPRTQENA-REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM 202 (348)
T ss_dssp EEEESSSTTSCHHHHHHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEES
T ss_pred EEEECccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999997775554 455666665558999999999999988888765543
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.72 E-value=1.8e-17 Score=179.69 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=109.8
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------H
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------L 851 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------l 851 (1085)
|+++|+.+.| ++ +++|++|++. + ++++|+||||||||||||+++++.- .
T Consensus 2 l~~~~l~~~y-----~~--~l~~isl~i~----~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRL-----GN--FRLNVDFEMG----R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEE-----TT--EEEEEEEEEC----S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEe-----CC--EEeeeEEEEC----C-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhh
Confidence 5788888888 22 5899999997 7 8999999999999999999987541 1
Q ss_pred hhccccccccccc---cch-------------------HHHHHHHcCCccccccccchhhH---HhHHHHHHHHhCCCCc
Q 040956 852 AQLGCFVPCEMCV---LSL-------------------ADTIFTRLGATDRIMTGESTFLV---ECTETASVLQKATQDS 906 (1085)
Q Consensus 852 aqiG~~VPa~~a~---i~~-------------------~d~I~trig~~D~i~~~~Stf~~---Em~ela~iL~~at~~s 906 (1085)
.++| |||+.... +++ ++.++..+|..+......++++. ....+|++| +.+|+
T Consensus 70 ~~i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~ 146 (240)
T 2onk_A 70 RGIG-FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL--VIQPR 146 (240)
T ss_dssp SCCB-CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH--TTCCS
T ss_pred CcEE-EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH--HcCCC
Confidence 1345 77765311 111 23355666765444443444444 444577777 89999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 907 LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 907 LvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
++|||||++|.|+..... ...++..+.++.|.++|++||+.+.+..++++..
T Consensus 147 lllLDEPts~LD~~~~~~-~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~ 198 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGV-LMEELRFVQREFDVPILHVTHDLIEAAMLADEVA 198 (240)
T ss_dssp SBEEESTTSSCCHHHHHH-HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEE
T ss_pred EEEEeCCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999776554 4456666655448899999999999888887643
No 23
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.71 E-value=3.1e-17 Score=187.68 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=117.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKF-----GNFTALNNINLKIK----DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEES-----SSSEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEE-----CCEEEEEeeEEEEC----CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh
Confidence 48899999888 45679999999997 789999999999999999999987541
Q ss_pred Hhhccccccccccc---cchH---------------------HHHHHHcCCccccccccchhhHH---hHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMCV---LSLA---------------------DTIFTRLGATDRIMTGESTFLVE---CTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a~---i~~~---------------------d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at 903 (1085)
..++| |||+..+- +++. +.++..+|..+......++++.+ ...+|++| +.
T Consensus 74 ~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL--~~ 150 (362)
T 2it1_A 74 DRNVG-LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARAL--VK 150 (362)
T ss_dssp GTTEE-EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHH--TT
T ss_pred HCcEE-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHH--Hc
Confidence 12355 77775432 2222 23455666654444444444444 44577777 99
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+|+++|||||++|+|+.....+ ...+..+.++.|.|+|++|||.+.+..++++..+..
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l-~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 208 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEV-RAELKRLQKELGITTVYVTHDQAEALAMADRIAVIR 208 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHH-HHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CCCEEEEECccccCCHHHHHHH-HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 9999999999999997776554 445566655558999999999999988888765543
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.71 E-value=1.1e-17 Score=178.35 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=111.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH----------------Hh
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------LA 852 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------la 852 (1085)
..|+++|+...| ++ .+++|++|.+. +|++++|+||||||||||||+++++.- ..
T Consensus 9 ~~l~~~~ls~~y-----~~-~il~~vsl~i~----~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGY-----DK-PVLERITMTIE----KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKG 78 (214)
T ss_dssp CEEEEEEEEEES-----SS-EEEEEEEEEEE----TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGG
T ss_pred ceEEEEEEEEEe-----CC-eEEeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcC
Confidence 689999999888 45 89999999998 789999999999999999999977531 12
Q ss_pred hccccccccccc---cchH-------------------HHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcE
Q 040956 853 QLGCFVPCEMCV---LSLA-------------------DTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSL 907 (1085)
Q Consensus 853 qiG~~VPa~~a~---i~~~-------------------d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sL 907 (1085)
++| |||+.... +++. +.++..+|..+. ....++++.+ ...+|++| +.+|++
T Consensus 79 ~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL--~~~p~l 154 (214)
T 1sgw_A 79 KIF-FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTL--LVNAEI 154 (214)
T ss_dssp GEE-EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHT--TSCCSE
T ss_pred cEE-EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHH--HhCCCE
Confidence 345 77775321 2222 234455555443 3333344444 44466666 899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+|||||++|.|+.....+. .++..+.++ |.++|++||+.+++..++++.
T Consensus 155 llLDEPts~LD~~~~~~l~-~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 155 YVLDDPVVAIDEDSKHKVL-KSILEILKE-KGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp EEEESTTTTSCTTTHHHHH-HHHHHHHHH-HSEEEEEESSCCTTSSEEEEG
T ss_pred EEEECCCcCCCHHHHHHHH-HHHHHHHhC-CCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999987765544 455666554 789999999999887777653
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.71 E-value=2.7e-17 Score=188.84 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=117.2
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 11 ~l~~~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRF-----GNFTAVNKLNLTIK----DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEE-----CCEEEEeeeEEEEC----CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh
Confidence 48999999988 45679999999998 789999999999999999999987541
Q ss_pred Hhhccccccccccc---cch---------------------HHHHHHHcCCcccccc---ccchhhHHhHHHHHHHHhCC
Q 040956 851 LAQLGCFVPCEMCV---LSL---------------------ADTIFTRLGATDRIMT---GESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 851 laqiG~~VPa~~a~---i~~---------------------~d~I~trig~~D~i~~---~~Stf~~Em~ela~iL~~at 903 (1085)
..++| |||+..+. +++ ++.++..+|..+.... .+|..+.....+|++| +.
T Consensus 82 ~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL--~~ 158 (372)
T 1v43_A 82 DRNIS-MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI--VV 158 (372)
T ss_dssp GGTEE-EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH--TT
T ss_pred hCcEE-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH--hc
Confidence 12355 67765321 122 2345666676544433 4455455555577777 99
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+|+++|||||++|+|+.....+. ..+..+.++.|.|+|++|||.+.+..++++..+..
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 216 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 216 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999987765544 45556655558999999999999988888765543
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=1.9e-17 Score=183.31 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=113.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------ 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------ 850 (1085)
++|+++|+...| ++..+++|++|++. +|++++|+||||||||||||+++++.-
T Consensus 20 ~~l~~~~l~~~y-----~~~~vL~~isl~i~----~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 20 MLIQLDQIGRMK-----QGKTILKKISWQIA----KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY 90 (279)
T ss_dssp EEEEEEEEEEEE-----TTEEEEEEEEEEEE----TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C
T ss_pred ceEEEEeEEEEE-----CCEEEEEeeeEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC
Confidence 579999999988 45679999999998 799999999999999999999976430
Q ss_pred -----Hhhcccccccccc-----ccchHH-------------------------HHHHHcCCccccccccchhhHH---h
Q 040956 851 -----LAQLGCFVPCEMC-----VLSLAD-------------------------TIFTRLGATDRIMTGESTFLVE---C 892 (1085)
Q Consensus 851 -----laqiG~~VPa~~a-----~i~~~d-------------------------~I~trig~~D~i~~~~Stf~~E---m 892 (1085)
..++| |||+... .+++.+ .++.++|..+......++++.+ .
T Consensus 91 ~~~~~~~~i~-~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 91 SAETVRQHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp CHHHHHTTEE-EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CHHHHcCcEE-EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 12345 6665421 112222 3445566554444444444444 4
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceE--EEEEechhHHHhhcCcc
Q 040956 893 TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL--LFATHYHPLTKEFASHP 958 (1085)
Q Consensus 893 ~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~ti--L~aTH~~el~~~~~~~~ 958 (1085)
..+|++| +.+|+|+|||||++|+|+..... ...++..+.++ |.++ |++||+.+++..++++.
T Consensus 170 v~lAraL--~~~p~lLlLDEPts~LD~~~~~~-l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v 233 (279)
T 2ihy_A 170 VMIARAL--MGQPQVLILDEPAAGLDFIARES-LLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKI 233 (279)
T ss_dssp HHHHHHH--HTCCSEEEEESTTTTCCHHHHHH-HHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEE
T ss_pred HHHHHHH--hCCCCEEEEeCCccccCHHHHHH-HHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEE
Confidence 4577777 89999999999999999777554 44566667665 8899 99999999887777654
No 27
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.71 E-value=4.2e-17 Score=179.40 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=113.4
Q ss_pred EEEEEcceeeeeecCCCC---cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-----------------
Q 040956 790 VLKIKGLWHPFALGENGG---LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV----------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~---~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~----------------- 849 (1085)
+|+++|+.+.|-. ++ ..+++|++|.+. +|++++|+||||||||||||+++++.
T Consensus 2 ~l~~~~l~~~y~~---~~~~~~~vl~~vsl~i~----~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHR---GTPLEKKALENVSLVIN----EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEEST---TSTTCEEEEEEEEEEEC----TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH
T ss_pred EEEEEEEEEEecC---CCccccceeeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH
Confidence 3788999888810 12 469999999998 79999999999999999999997653
Q ss_pred -HHhhccccccccc----cccch--------------------HHHHHHHcCCc--cccccccchhhHH---hHHHHHHH
Q 040956 850 -ILAQLGCFVPCEM----CVLSL--------------------ADTIFTRLGAT--DRIMTGESTFLVE---CTETASVL 899 (1085)
Q Consensus 850 -ilaqiG~~VPa~~----a~i~~--------------------~d~I~trig~~--D~i~~~~Stf~~E---m~ela~iL 899 (1085)
+..++| |||+.. ...++ ++.++..+|.. +......++++.+ ...+|++|
T Consensus 75 ~~~~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL 153 (266)
T 2yz2_A 75 EIRRNIG-IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI 153 (266)
T ss_dssp HHGGGEE-EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH
T ss_pred HhhhhEE-EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHH
Confidence 122355 777752 11122 23455666665 4444434444444 44577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+.+|+++|||||++|+|+..... ...++..+.++ |.|+|++||+.+++..++++..
T Consensus 154 --~~~p~lllLDEPts~LD~~~~~~-l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~ 209 (266)
T 2yz2_A 154 --VHEPDILILDEPLVGLDREGKTD-LLRIVEKWKTL-GKTVILISHDIETVINHVDRVV 209 (266)
T ss_dssp --TTCCSEEEEESTTTTCCHHHHHH-HHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEE
T ss_pred --HcCCCEEEEcCccccCCHHHHHH-HHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999776544 44566667665 8899999999999888777543
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.70 E-value=5.1e-17 Score=186.67 Aligned_cols=160 Identities=14% Similarity=0.199 Sum_probs=117.5
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
.|+++|+.+.| ++..+++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVF-----GEVTAVREMSLEVK----DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEE----TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEE-----CCEEEEeeeEEEEc----CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcccccc
Confidence 58899999988 45679999999997 789999999999999999999987541
Q ss_pred --H----hhccccccccccc---cchH---------------------HHHHHHcCCccccccccchhhHH---hHHHHH
Q 040956 851 --L----AQLGCFVPCEMCV---LSLA---------------------DTIFTRLGATDRIMTGESTFLVE---CTETAS 897 (1085)
Q Consensus 851 --l----aqiG~~VPa~~a~---i~~~---------------------d~I~trig~~D~i~~~~Stf~~E---m~ela~ 897 (1085)
+ .++| |||+..+. +++. +.++..+|..+......++++.+ ...+|+
T Consensus 74 ~~~~~~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 74 IFVPPKDRDIA-MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp EECCGGGSSEE-EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred ccCCHhHCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 1 1245 67765432 2222 23455566655444444445444 444777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
+| +.+|.|+|||||++|+|+.....+. ..+..+.++.|.|+|++|||.+++..++++..+..
T Consensus 153 AL--~~~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 214 (372)
T 1g29_1 153 AI--VRKPQVFLMDEPLSNLDAKLRVRMR-AELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN 214 (372)
T ss_dssp HH--HTCCSEEEEECTTTTSCHHHHHHHH-HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HH--hcCCCEEEECCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEe
Confidence 77 8999999999999999987765544 45566665558999999999999998888765544
No 29
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.69 E-value=7.4e-17 Score=184.19 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=117.1
Q ss_pred EEEEEcceeeeeecCCCCcc--cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-----------------
Q 040956 790 VLKIKGLWHPFALGENGGLP--VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI----------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~--V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i----------------- 850 (1085)
.|+++|+.+.| ++.. +++|++|++. +|++++|+||||||||||||+|+++.-
T Consensus 3 ~l~i~~l~~~y-----~~~~~~vl~~vsl~i~----~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVF-----KKGKVVALDNVNINIE----NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEE-----GGGTEEEEEEEEEEEC----TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEE-----CCEeeeeEeceEEEEC----CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc
Confidence 48899999888 3456 9999999998 789999999999999999999987541
Q ss_pred ---H----hhccccccccccc---cch---------------------HHHHHHHcCCccccccccchhhHH---hHHHH
Q 040956 851 ---L----AQLGCFVPCEMCV---LSL---------------------ADTIFTRLGATDRIMTGESTFLVE---CTETA 896 (1085)
Q Consensus 851 ---l----aqiG~~VPa~~a~---i~~---------------------~d~I~trig~~D~i~~~~Stf~~E---m~ela 896 (1085)
+ .++| |||+...- +++ ++.++..+|..+......++++.+ ...+|
T Consensus 74 ~~~~~~~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 74 KLIVPPEDRKIG-MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp EESSCGGGSCEE-EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cccCChhhCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 1 1245 67665321 122 234556677655444444444444 44577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceee
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTL 962 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~ 962 (1085)
++| +.+|+++|||||++|+|+.....+. ..+..+.++.|.|+|++|||.+.+..++++..+..
T Consensus 153 raL--~~~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~ 215 (353)
T 1oxx_K 153 RAL--VKDPSLLLLDEPFSNLDARMRDSAR-ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215 (353)
T ss_dssp HHH--TTCCSEEEEESTTTTSCGGGHHHHH-HHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred HHH--HhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 777 9999999999999999987765544 45566655558999999999999988888765543
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.68 E-value=6e-17 Score=176.54 Aligned_cols=154 Identities=20% Similarity=0.157 Sum_probs=106.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH--H-------------H----
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA--V-------------I---- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i--~-------------i---- 850 (1085)
+|+++|+.+.| ++..|++|++|++. +|++++|+||||||||||||+++++ . +
T Consensus 3 ~l~~~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASI-----DGETILKGVNLVVP----KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEE----TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEE-----CCEEEEeceEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC
Confidence 58999999888 45689999999998 7999999999999999999999886 1 0
Q ss_pred ---Hhh--ccccccccccc---cch------------------------HHHHHHHcCCc-cccccc----cchhhHHhH
Q 040956 851 ---LAQ--LGCFVPCEMCV---LSL------------------------ADTIFTRLGAT-DRIMTG----ESTFLVECT 893 (1085)
Q Consensus 851 ---laq--iG~~VPa~~a~---i~~------------------------~d~I~trig~~-D~i~~~----~Stf~~Em~ 893 (1085)
..+ +| |||+.... +++ ++.++.++|.. +..... +|..+....
T Consensus 74 ~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 74 PDERARKGLF-LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp HHHHHHTTBC-CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred HHHHHhCcEE-EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 011 23 67764321 111 12244455652 322222 555555555
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh-cCc
Q 040956 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF-ASH 957 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~-~~~ 957 (1085)
.+|++| +.+|+|+|||||++|.|+.....+ ..++..+.+ .|.++|++||+.+++..+ +++
T Consensus 153 ~iAraL--~~~p~lllLDEPts~LD~~~~~~l-~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 153 EILQLL--VLEPTYAVLDETDSGLDIDALKVV-ARGVNAMRG-PNFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp HHHHHH--HHCCSEEEEECGGGTTCHHHHHHH-HHHHHHHCS-TTCEEEEECSSSGGGGTSCCSE
T ss_pred HHHHHH--HcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHh-cCCEEEEEecCHHHHHHhcCCE
Confidence 677777 889999999999999997765443 445555544 378999999999988766 354
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.68 E-value=7.2e-17 Score=178.03 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=106.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++++.+.|-. .+...|++|++|.+. +|++++|+||||||||||||+|+++.
T Consensus 15 ~~l~~~~l~~~y~~--~~~~~vl~~vsl~i~----~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPN--HPNVQVLQGLTFTLY----PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CCEEEEEEEECCTT--CTTSCCEEEEEEEEC----TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH
T ss_pred ceEEEEEEEEEeCC--CCCceeeEeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH
Confidence 46999999988710 012579999999998 79999999999999999999997653
Q ss_pred --HHhhcccccccccc--ccchHHHHH-------------------------HHc--CCcccc---ccccchhhHHhHHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADTIF-------------------------TRL--GATDRI---MTGESTFLVECTET 895 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~I~-------------------------tri--g~~D~i---~~~~Stf~~Em~el 895 (1085)
+..++| |||+... ..++.+.|. ..+ |..+.. ...+|..+.....+
T Consensus 89 ~~~~~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~l 167 (271)
T 2ixe_A 89 HYLHTQVA-AVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVAL 167 (271)
T ss_dssp HHHHHHEE-EECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHH
T ss_pred HHHhccEE-EEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHH
Confidence 112456 7887542 123333331 111 121111 22344444444457
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|++| +.+|.|+|||||++|+|+.....+ ..++..+.++.++|+|++||+.+++.. +++
T Consensus 168 AraL--~~~p~lllLDEPts~LD~~~~~~i-~~~l~~~~~~~g~tviivtHd~~~~~~-~d~ 225 (271)
T 2ixe_A 168 ARAL--IRKPRLLILDNATSALDAGNQLRV-QRLLYESPEWASRTVLLITQQLSLAER-AHH 225 (271)
T ss_dssp HHHH--TTCCSEEEEESTTTTCCHHHHHHH-HHHHHHCTTTTTSEEEEECSCHHHHTT-CSE
T ss_pred HHHH--hcCCCEEEEECCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHHh-CCE
Confidence 7777 999999999999999997775443 344445443337899999999998764 554
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.68 E-value=1.1e-16 Score=174.55 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=108.9
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH-------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI------------------- 850 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i------------------- 850 (1085)
+|+++|+.+. .+++|++|.+. +|++++|+||||||||||||+++++.-
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~----~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVR----AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEE----TTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHH
Confidence 5788887642 58999999997 799999999999999999999987531
Q ss_pred -Hhhcccccccccc---ccch----------------HHHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCc-
Q 040956 851 -LAQLGCFVPCEMC---VLSL----------------ADTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDS- 906 (1085)
Q Consensus 851 -laqiG~~VPa~~a---~i~~----------------~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~s- 906 (1085)
..++| |||+... .+++ ++.++..+|..+......++++.+ ...+|++| +.+|+
T Consensus 71 ~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL--~~~p~~ 147 (249)
T 2qi9_C 71 LALHRA-YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV--LQITPQ 147 (249)
T ss_dssp HHHHEE-EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH--HHHCTT
T ss_pred HhceEE-EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH--HcCCCc
Confidence 12345 7776532 1122 234566677665444444444444 44566766 77888
Q ss_pred ------EEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 907 ------LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 907 ------LvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|+|||||++|+|+..... ...++..+.++ |.++|++||+.+++..++++.
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~-l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSA-LDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHH-HHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEE
T ss_pred CCCCCeEEEEECCcccCCHHHHHH-HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999776554 44566666655 889999999999998888754
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.66 E-value=1.5e-16 Score=175.09 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=110.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-H-----------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-I----------------- 850 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-i----------------- 850 (1085)
++|+++|+.+.| ++..+++|++|.+. +|++++|+||||||||||||+++++. +
T Consensus 19 ~~l~~~~l~~~y-----~~~~vl~~vsl~i~----~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~ 89 (267)
T 2zu0_C 19 HMLSIKDLHVSV-----EDKAILRGLSLDVH----PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89 (267)
T ss_dssp -CEEEEEEEEEE-----TTEEEEEEEEEEEC----TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGS
T ss_pred ceEEEEeEEEEE-----CCEEEEEeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcC
Confidence 579999999888 45689999999998 79999999999999999999998862 0
Q ss_pred ----Hhh--cccccccccccc---c----------------------------hHHHHHHHcCCccc-ccc----ccchh
Q 040956 851 ----LAQ--LGCFVPCEMCVL---S----------------------------LADTIFTRLGATDR-IMT----GESTF 888 (1085)
Q Consensus 851 ----laq--iG~~VPa~~a~i---~----------------------------~~d~I~trig~~D~-i~~----~~Stf 888 (1085)
..+ +| |||+....+ + .++.++.++|..+. ... .+|..
T Consensus 90 ~~~~~~~~~i~-~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 168 (267)
T 2zu0_C 90 SPEDRAGEGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168 (267)
T ss_dssp CHHHHHHHTEE-EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred CHHHHhhCCEE-EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 011 33 677653210 0 12234556666422 222 25555
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh-cCcc
Q 040956 889 LVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF-ASHP 958 (1085)
Q Consensus 889 ~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~-~~~~ 958 (1085)
+.....+|++| +.+|.|+|||||++|+|+.....+ ..++..+.++ |+|+|++||+.+++..+ +++.
T Consensus 169 q~QRv~iAraL--~~~p~lLlLDEPts~LD~~~~~~l-~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v 235 (267)
T 2zu0_C 169 EKKRNDILQMA--VLEPELCILDESDSGLDIDALKVV-ADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYV 235 (267)
T ss_dssp HHHHHHHHHHH--HHCCSEEEEESTTTTCCHHHHHHH-HHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEE
T ss_pred HHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEE
Confidence 55555677777 899999999999999997765443 3445555433 78999999999988765 6653
No 34
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.66 E-value=2.2e-16 Score=171.87 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=108.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
.-++++|+.+.|- .++..|++|++|.+. +|++++|+||||||||||||+++++.
T Consensus 6 ~~~~~~~l~~~y~---~~~~~vl~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~ 78 (247)
T 2ff7_A 6 HDITFRNIRFRYK---PDSPVILDNINLSIK----QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78 (247)
T ss_dssp EEEEEEEEEEESS---TTSCEEEEEEEEEEE----TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH
T ss_pred CceeEEEEEEEeC---CCCcceeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 3588999988772 123579999999998 79999999999999999999997653
Q ss_pred --HHhhccccccccccc--cchHHH---------------HHHHcCCccccc--------------cccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADT---------------IFTRLGATDRIM--------------TGESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~---------------I~trig~~D~i~--------------~~~Stf~~Em~ela 896 (1085)
+..++| |||+.... .++.+. ++..++..+.+. ..+|..+.....+|
T Consensus 79 ~~~~~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 79 NWLRRQVG-VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp HHHHHHEE-EECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred HHHHhcEE-EEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 112455 78775421 233333 223334332211 24555555555577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
++| +.+|+|+|||||++|+|+.....+. .++..+ .+ ++|+|++||+.+++.. +++
T Consensus 158 raL--~~~p~lllLDEPts~LD~~~~~~i~-~~l~~~-~~-g~tviivtH~~~~~~~-~d~ 212 (247)
T 2ff7_A 158 RAL--VNNPKILIFDEATSALDYESEHVIM-RNMHKI-CK-GRTVIIIAHRLSTVKN-ADR 212 (247)
T ss_dssp HHH--TTCCSEEEECCCCSCCCHHHHHHHH-HHHHHH-HT-TSEEEEECSSGGGGTT-SSE
T ss_pred HHH--hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHH-cC-CCEEEEEeCCHHHHHh-CCE
Confidence 777 9999999999999999987765544 455555 34 8999999999988754 554
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.64 E-value=2.2e-16 Score=171.38 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=106.2
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI-------------------- 850 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i-------------------- 850 (1085)
|+++|+.+.|- ++..+++|++|++. +|++++|+||||||||||||+++++.-
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQ----PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEEC----TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHH
Confidence 67888887761 34679999999998 799999999999999999999977531
Q ss_pred -Hhhccccccccccc--cchHH----------------HHHHHcCCccccc--------------cccchhhHHhHHHHH
Q 040956 851 -LAQLGCFVPCEMCV--LSLAD----------------TIFTRLGATDRIM--------------TGESTFLVECTETAS 897 (1085)
Q Consensus 851 -laqiG~~VPa~~a~--i~~~d----------------~I~trig~~D~i~--------------~~~Stf~~Em~ela~ 897 (1085)
..++| |||+.... .++.+ .+...++..+.+. ..+|..+.....+|+
T Consensus 74 ~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAr 152 (243)
T 1mv5_A 74 WRSQIG-FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIAR 152 (243)
T ss_dssp CTTTCC-EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred HHhhEE-EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHH
Confidence 12345 77765321 12222 2333444433221 234555555555777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+| +.+|+|+|||||++|+|+.....+. .++..+. + ++|+|++||+.+++.. +++
T Consensus 153 al--~~~p~lllLDEPts~LD~~~~~~i~-~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~ 206 (243)
T 1mv5_A 153 AF--LRNPKILMLDEATASLDSESESMVQ-KALDSLM-K-GRTTLVIAHRLSTIVD-ADK 206 (243)
T ss_dssp HH--HHCCSEEEEECCSCSSCSSSCCHHH-HHHHHHH-T-TSEEEEECCSHHHHHH-CSE
T ss_pred HH--hcCCCEEEEECCcccCCHHHHHHHH-HHHHHhc-C-CCEEEEEeCChHHHHh-CCE
Confidence 77 8899999999999999987755544 4555554 4 8999999999988753 554
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.64 E-value=1.4e-16 Score=171.40 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=104.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhccccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVPC 860 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VPa 860 (1085)
..|+++++.+.|- .++..+++|++|++. +|++++|+||||||||||||+++++.- -.++| |||+
T Consensus 5 ~~l~~~~l~~~y~---~~~~~il~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~-~v~q 76 (229)
T 2pze_A 5 TEVVMENVTAFWE---EGGTPVLKDINFKIE----RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQ 76 (229)
T ss_dssp EEEEEEEEEECSS---TTSCCSEEEEEEEEE----TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECS
T ss_pred ceEEEEEEEEEeC---CCCceeeeeeEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEE-EEec
Confidence 3689999988772 124679999999998 799999999999999999999987531 12345 7777
Q ss_pred cccc--cchHHHH--------------HHHcCCcccc--------------ccccchhhHHhHHHHHHHHhCCCCcEEEE
Q 040956 861 EMCV--LSLADTI--------------FTRLGATDRI--------------MTGESTFLVECTETASVLQKATQDSLVIL 910 (1085)
Q Consensus 861 ~~a~--i~~~d~I--------------~trig~~D~i--------------~~~~Stf~~Em~ela~iL~~at~~sLvLL 910 (1085)
.... .++.+.+ ....+..+.+ ...+|..+.....+|++| +.+|+++||
T Consensus 77 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral--~~~p~lllL 154 (229)
T 2pze_A 77 FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV--YKDADLYLL 154 (229)
T ss_dssp SCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHH--HSCCSEEEE
T ss_pred CCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH--hcCCCEEEE
Confidence 5321 1333322 2222322211 123444444455577777 899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 911 DEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|||++|.|+.....+...++..+. + +.|+|++||+.+++.. +++
T Consensus 155 DEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~~-~d~ 198 (229)
T 2pze_A 155 DSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLKK-ADK 198 (229)
T ss_dssp ESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHHH-CSE
T ss_pred ECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHHh-CCE
Confidence 999999997765443332222222 2 7899999999988764 654
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.63 E-value=6.5e-16 Score=169.39 Aligned_cols=156 Identities=18% Similarity=0.113 Sum_probs=105.8
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|-. .....|++|++|.+. +|++++|+||||||||||||+++++.
T Consensus 16 ~~l~i~~l~~~y~~--~~~~~vl~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPK--QTNHRTLKSINFFIP----SGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CCEEEEEEEECCTT--CCSSCSEEEEEEEEC----TTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHH
T ss_pred CeEEEEEEEEEeCC--CCcCceeEeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHH
Confidence 46999999988710 001469999999998 79999999999999999999997753
Q ss_pred -HHhhcccccccccc--ccchHHHH---------------HHHcCCcccc--------------ccccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMC--VLSLADTI---------------FTRLGATDRI--------------MTGESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a--~i~~~d~I---------------~trig~~D~i--------------~~~~Stf~~Em~ela~ 897 (1085)
+..++| |||+... ..++.+.| +..++..+.+ ...+|..+.....+|+
T Consensus 90 ~~~~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAr 168 (260)
T 2ghi_A 90 SIRSIIG-IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168 (260)
T ss_dssp HHHTTEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHH
T ss_pred HHhccEE-EEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHH
Confidence 112355 7777532 12333332 2223332211 1234444444555777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+| +.+|+|+|||||++|+|+.....+ ..++..+. + +.|+|++||+.+++.. +++
T Consensus 169 aL--~~~p~lllLDEPts~LD~~~~~~i-~~~l~~l~-~-~~tviivtH~~~~~~~-~d~ 222 (260)
T 2ghi_A 169 CL--LKDPKIVIFDEATSSLDSKTEYLF-QKAVEDLR-K-NRTLIIIAHRLSTISS-AES 222 (260)
T ss_dssp HH--HHCCSEEEEECCCCTTCHHHHHHH-HHHHHHHT-T-TSEEEEECSSGGGSTT-CSE
T ss_pred HH--HcCCCEEEEECccccCCHHHHHHH-HHHHHHhc-C-CCEEEEEcCCHHHHHh-CCE
Confidence 77 899999999999999998775444 44555553 3 7899999999988753 554
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.63 E-value=8e-16 Score=168.97 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=105.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA------------------ 852 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila------------------ 852 (1085)
|+++++...|-... +...+++|++|.+. |++++|+||||||||||||+++++. ..
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-----Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-----GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-----SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-----CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhh
Confidence 67888888772100 01578999999984 6899999999999999999998864 21
Q ss_pred hcccccccccc-ccch-----------------HHHHHHHcCCc-cccccccchhhHH---hHHHHHHHHhCCCCcEEEE
Q 040956 853 QLGCFVPCEMC-VLSL-----------------ADTIFTRLGAT-DRIMTGESTFLVE---CTETASVLQKATQDSLVIL 910 (1085)
Q Consensus 853 qiG~~VPa~~a-~i~~-----------------~d~I~trig~~-D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLL 910 (1085)
++|.|||+... ..++ ++.++.++|.. +......++++.+ ...+|++| +.+|+++||
T Consensus 75 ~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL--~~~p~lllL 152 (263)
T 2pjz_A 75 RYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL--ASQPEIVGL 152 (263)
T ss_dssp TEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH--HTCCSEEEE
T ss_pred heEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEE
Confidence 23326776432 2222 23355667776 5444444455544 44466666 899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC-ccce
Q 040956 911 DELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS-HPHV 960 (1085)
Q Consensus 911 DEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~-~~~V 960 (1085)
|||++|.|+..... +++.|.+... ++|++||+.+++..+++ +..+
T Consensus 153 DEPts~LD~~~~~~----l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~ 198 (263)
T 2pjz_A 153 DEPFENVDAARRHV----ISRYIKEYGK-EGILVTHELDMLNLYKEYKAYF 198 (263)
T ss_dssp ECTTTTCCHHHHHH----HHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEE
T ss_pred ECCccccCHHHHHH----HHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEE
Confidence 99999999766433 3333333223 99999999999887777 6433
No 39
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=169.75 Aligned_cols=155 Identities=16% Similarity=0.113 Sum_probs=102.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhcccccccc
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVPCE 861 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VPa~ 861 (1085)
.|+++++.+.|- .++..|++|++|++. +|++++|+||||||||||||+++++.- -.++| |||+.
T Consensus 3 ~l~~~~l~~~y~---~~~~~vl~~vsl~i~----~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~-~v~Q~ 74 (237)
T 2cbz_A 3 SITVRNATFTWA---RSDPPTLNGITFSIP----EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA-YVPQQ 74 (237)
T ss_dssp CEEEEEEEEESC---TTSCCSEEEEEEEEC----TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEE-EECSS
T ss_pred eEEEEEEEEEeC---CCCCceeeeeEEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEE-EEcCC
Confidence 488999988871 013679999999998 799999999999999999999987541 12345 77765
Q ss_pred cc--ccchHHHH--------------HHHcCCcc--------------ccccccchhhHHhHHHHHHHHhCCCCcEEEEe
Q 040956 862 MC--VLSLADTI--------------FTRLGATD--------------RIMTGESTFLVECTETASVLQKATQDSLVILD 911 (1085)
Q Consensus 862 ~a--~i~~~d~I--------------~trig~~D--------------~i~~~~Stf~~Em~ela~iL~~at~~sLvLLD 911 (1085)
.. ..++.+.| ...++..+ .....+|..+.....+|++| +.+|+++|||
T Consensus 75 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL--~~~p~lllLD 152 (237)
T 2cbz_A 75 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV--YSNADIYLFD 152 (237)
T ss_dssp CCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH--HHCCSEEEEE
T ss_pred CcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEe
Confidence 31 22333332 22222111 11223444444455577777 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHH--HHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 912 ELGRGTSTFDGYAIAYAVF--RQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avl--e~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
||++|.|+.....+...+. ..+ . .+.|+|++||+.+++. .+++
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~-~~d~ 197 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLP-QVDV 197 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGG-GSSE
T ss_pred CcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHH-hCCE
Confidence 9999999776544333221 112 2 3789999999998875 4554
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.61 E-value=1.3e-15 Score=170.66 Aligned_cols=155 Identities=23% Similarity=0.255 Sum_probs=109.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|- ++..|++|++|.+. +|++++|+||||||||||||+++++.
T Consensus 52 ~~i~~~~vs~~y~----~~~~vL~~isl~i~----~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFSYA----DGRETLQDVSFTVM----PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEESS----TTCEEEEEEEEEEC----TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEEcC----CCCceeeeeeEEEc----CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH
Confidence 3599999998882 34679999999998 79999999999999999999997643
Q ss_pred --HHhhccccccccccc--cchHHHHH---------------HHcCCcccc-----------c---cccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTIF---------------TRLGATDRI-----------M---TGESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I~---------------trig~~D~i-----------~---~~~Stf~~Em~ela 896 (1085)
+..++| |||++... .++.+.|. ...++.+.+ . ..+|..+.....+|
T Consensus 124 ~~~r~~i~-~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 124 ASLRSHIG-VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp HHHHHTEE-EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred HHHhcceE-EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 234566 88886432 23444332 222222221 1 23444444455577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|.++|||||++|+|+.....+. ..+..+.+ ++|+|++||++..+.. +++.
T Consensus 203 RAL--~~~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i 258 (306)
T 3nh6_A 203 RTI--LKAPGIILLDEATSALDTSNERAIQ-ASLAKVCA--NRTTIVVAHRLSTVVN-ADQI 258 (306)
T ss_dssp HHH--HHCCSEEEEECCSSCCCHHHHHHHH-HHHHHHHT--TSEEEEECCSHHHHHT-CSEE
T ss_pred HHH--HhCCCEEEEECCcccCCHHHHHHHH-HHHHHHcC--CCEEEEEEcChHHHHc-CCEE
Confidence 777 8899999999999999987765544 34455543 6899999999999875 6543
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.58 E-value=8.1e-16 Score=171.20 Aligned_cols=152 Identities=17% Similarity=0.108 Sum_probs=94.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhccccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVPC 860 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VPa 860 (1085)
+.|+++++... ...++++++|.+. +|++++|+||||||||||||+++++.- -.++| |||+
T Consensus 39 ~~l~~~~l~~~-------~~~vl~~isl~i~----~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~-~v~Q 106 (290)
T 2bbs_A 39 DSLSFSNFSLL-------GTPVLKDINFKIE----RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQ 106 (290)
T ss_dssp ------------------CCCSEEEEEEEEC----TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEE-EECS
T ss_pred ceEEEEEEEEc-------CceEEEeeEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEE-EEeC
Confidence 45888888753 2478999999998 799999999999999999999987541 12455 7777
Q ss_pred cccc--cchHHHHH-------------HHcCCcccc--------------ccccchhhHHhHHHHHHHHhCCCCcEEEEe
Q 040956 861 EMCV--LSLADTIF-------------TRLGATDRI--------------MTGESTFLVECTETASVLQKATQDSLVILD 911 (1085)
Q Consensus 861 ~~a~--i~~~d~I~-------------trig~~D~i--------------~~~~Stf~~Em~ela~iL~~at~~sLvLLD 911 (1085)
.... .++.+.+. ...+..+.+ ...+|..+.....+|++| +.+|+|+|||
T Consensus 107 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL--~~~p~lllLD 184 (290)
T 2bbs_A 107 NSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV--YKDADLYLLD 184 (290)
T ss_dssp SCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH--HSCCSEEEEE
T ss_pred CCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHH--HCCCCEEEEE
Confidence 5421 24444442 122222111 123455555555577777 8999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 912 ELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 912 EpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
||++|.|+.....+...++..+ .+ +.++|++||+.+++.. +++
T Consensus 185 EPts~LD~~~~~~i~~~ll~~~-~~-~~tviivtHd~~~~~~-~d~ 227 (290)
T 2bbs_A 185 SPFGYLDVLTEKEIFESCVCKL-MA-NKTRILVTSKMEHLKK-ADK 227 (290)
T ss_dssp STTTTCCHHHHHHHHHHCCCCC-TT-TSEEEEECCCHHHHHH-SSE
T ss_pred CCcccCCHHHHHHHHHHHHHHh-hC-CCEEEEEecCHHHHHc-CCE
Confidence 9999999776544333222222 22 7899999999988754 554
No 42
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.56 E-value=6.1e-15 Score=177.40 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=110.1
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------hhcccccc
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------AQLGCFVP 859 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------aqiG~~VP 859 (1085)
.+.++++++...| +...+++++|.+. +|++++|+||||||||||||+|+++.-. ..+| |||
T Consensus 285 ~~~l~~~~l~~~~------~~~~l~~~~~~i~----~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~-~v~ 353 (538)
T 1yqt_A 285 ETLVTYPRLVKDY------GSFRLEVEPGEIK----KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA-YKP 353 (538)
T ss_dssp CEEEEECCEEEEE------TTEEEEECCEEEE----TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEE-EEC
T ss_pred CeEEEEeeEEEEE------CCEEEEeCccccC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEE-EEe
Confidence 3689999998776 2345667777766 7899999999999999999999875321 2345 777
Q ss_pred cccc---ccchHHH-----------------HHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCC
Q 040956 860 CEMC---VLSLADT-----------------IFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 860 a~~a---~i~~~d~-----------------I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrG 916 (1085)
+... ..++.+. ++.++|..+......++++++ ...+|++| +.+|.|+|||||++|
T Consensus 354 Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL--~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 354 QYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL--LRDADIYLLDEPSAY 431 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH--TSCCSEEEEECTTTT
T ss_pred cCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEeCCccc
Confidence 7542 2222222 222344443333334444444 44477777 899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 917 Ts~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.|......+ ..++..+.++.|.++|++|||.+++..++++..+
T Consensus 432 LD~~~~~~i-~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~v 474 (538)
T 1yqt_A 432 LDVEQRLAV-SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMV 474 (538)
T ss_dssp CCHHHHHHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred CCHHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 997765554 4455666544588999999999999988886544
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.55 E-value=8.1e-15 Score=178.38 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=111.7
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH--------Hhhcccccc
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI--------LAQLGCFVP 859 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i--------laqiG~~VP 859 (1085)
.+.++++++...| +.+.+++++|.+. +|++++|+||||+|||||||+++++.- -.++| |||
T Consensus 355 ~~~l~~~~l~~~~------~~~~l~~~~~~v~----~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~-~v~ 423 (607)
T 3bk7_A 355 ETLVEYPRLVKDY------GSFKLEVEPGEIR----KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA-YKP 423 (607)
T ss_dssp CEEEEECCEEEEC------SSCEEEECCEEEE----TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEE-EEC
T ss_pred ceEEEEeceEEEe------cceEEEecccccC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEE-EEe
Confidence 3579999988766 2345667777766 789999999999999999999987531 12344 777
Q ss_pred cccc---ccchH-----------------HHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcEEEEeCCCCC
Q 040956 860 CEMC---VLSLA-----------------DTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 860 a~~a---~i~~~-----------------d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sLvLLDEpgrG 916 (1085)
+... ..++. +.++.++|..+......++++++ ...+|++| +.+|.|+|||||++|
T Consensus 424 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL--~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 424 QYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATL--LRDADIYLLDEPSAY 501 (607)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHH--TSCCSEEEEECTTTT
T ss_pred cCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEeCCccC
Confidence 7531 11221 22445556554444444444444 44577777 899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 917 TSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 917 Ts~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
+|......+ ..++..+.++.|.++|++|||.+++..++++..+
T Consensus 502 LD~~~~~~l-~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~v 544 (607)
T 3bk7_A 502 LDVEQRLAV-SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV 544 (607)
T ss_dssp CCHHHHHHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred CCHHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 997775554 4566666654588999999999999988876543
No 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.55 E-value=7.5e-15 Score=169.53 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=110.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|- .++..+++|++|++. +|++++|+||||||||||||+|+++.
T Consensus 18 ~~i~~~~l~~~y~---~~~~~~L~~vsl~i~----~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYT---EGGNAILENISFSIS----PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESS---SSSCCSEEEEEEEEC----TTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEec---CCCeEEeeceeEEEc----CCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChH
Confidence 4699999998882 134689999999998 79999999999999999999998753
Q ss_pred -HHhhcccccccccccc--chHH--------------HHHHHcCCcccccc---c-----------cchhhHHhHHHHHH
Q 040956 850 -ILAQLGCFVPCEMCVL--SLAD--------------TIFTRLGATDRIMT---G-----------ESTFLVECTETASV 898 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~i--~~~d--------------~I~trig~~D~i~~---~-----------~Stf~~Em~ela~i 898 (1085)
+..++| |||+..+.+ ++.+ .++..++..+.+.. . +|..+.....+|++
T Consensus 91 ~~rr~ig-~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 91 QWRKAFG-VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHTEE-EESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHhCCEE-EEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 123455 787765322 2222 23445554433322 2 55555555567777
Q ss_pred HHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 899 LQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 899 L~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
| +.+|+|+|||||++|+|+.....+. ..+..+. .++|+|++||+.+.+. .+++..+.
T Consensus 170 L--~~~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~--~~~tvi~vtHd~e~~~-~aDri~vl 226 (390)
T 3gd7_A 170 V--LSKAKILLLDEPSAHLDPVTYQIIR-RTLKQAF--ADCTVILCEARIEAML-ECDQFLVI 226 (390)
T ss_dssp H--HTTCCEEEEESHHHHSCHHHHHHHH-HHHHTTT--TTSCEEEECSSSGGGT-TCSEEEEE
T ss_pred H--hcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHh--CCCEEEEEEcCHHHHH-hCCEEEEE
Confidence 7 8999999999998888876544433 2333321 3789999999987654 46665444
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.54 E-value=8.9e-15 Score=175.76 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=110.2
Q ss_pred CCEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH--------h-hccccc
Q 040956 788 GPVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL--------A-QLGCFV 858 (1085)
Q Consensus 788 ~~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il--------a-qiG~~V 858 (1085)
.+.++++++.+.| +.+.+.+.+|++. +|++++|+||||||||||||+++++.-. . .++ |+
T Consensus 267 ~~~l~~~~l~~~~------~~~~l~~~~~~i~----~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~-~~ 335 (538)
T 3ozx_A 267 KTKMKWTKIIKKL------GDFQLVVDNGEAK----EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS-YK 335 (538)
T ss_dssp CEEEEECCEEEEE------TTEEEEECCEEEE----TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEE-EE
T ss_pred cceEEEcceEEEE------CCEEEEeccceEC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeE-ee
Confidence 3678899988776 2355565666666 7899999999999999999999875311 1 122 55
Q ss_pred ccccc---ccchHHH------------------HHHHcCCccccccccchhhHHhH---HHHHHHHhCCCCcEEEEeCCC
Q 040956 859 PCEMC---VLSLADT------------------IFTRLGATDRIMTGESTFLVECT---ETASVLQKATQDSLVILDELG 914 (1085)
Q Consensus 859 Pa~~a---~i~~~d~------------------I~trig~~D~i~~~~Stf~~Em~---ela~iL~~at~~sLvLLDEpg 914 (1085)
|+... ..++.+. ++.+++..+......++++++++ .+|++| +.+|+|+|||||+
T Consensus 336 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL--~~~p~lLlLDEPT 413 (538)
T 3ozx_A 336 PQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATL--AKEADLYVLDQPS 413 (538)
T ss_dssp CSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHH--HSCCSEEEEESTT
T ss_pred chhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH--HcCCCEEEEeCCc
Confidence 55321 2233332 23334444433344445555443 467777 8999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 915 RGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 915 rGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|+|......+ ..++..+.++.+.++|++|||.+++..++++..+.
T Consensus 414 ~gLD~~~~~~i-~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl 459 (538)
T 3ozx_A 414 SYLDVEERYIV-AKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF 459 (538)
T ss_dssp TTCCHHHHHHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred cCCCHHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99997776554 45666676656899999999999999999875443
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.53 E-value=2.7e-14 Score=173.85 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=107.6
Q ss_pred EcceeeeeecCCCCc-ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh--------------------
Q 040956 794 KGLWHPFALGENGGL-PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA-------------------- 852 (1085)
Q Consensus 794 k~lrhp~~~~~~~~~-~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila-------------------- 852 (1085)
+|+.+.| ++. +++++++ .+. +|++++|+||||+|||||||+++++....
T Consensus 95 ~~ls~~y-----g~~~~~l~~vs-~i~----~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~ 164 (607)
T 3bk7_A 95 EDCVHRY-----GVNAFVLYRLP-IVK----DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164 (607)
T ss_dssp GSEEEEC-----STTCCEEECCC-CCC----TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTH
T ss_pred CCeEEEE-----CCCCeeeCCCC-CCC----CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEeh
Confidence 6777777 333 6889998 766 78999999999999999999997642100
Q ss_pred ------------hcccccccccc------------------ccchHHHHHHHcCCccccccccchhhHH---hHHHHHHH
Q 040956 853 ------------QLGCFVPCEMC------------------VLSLADTIFTRLGATDRIMTGESTFLVE---CTETASVL 899 (1085)
Q Consensus 853 ------------qiG~~VPa~~a------------------~i~~~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL 899 (1085)
.++ ++++... ....++.++..+|..+......++++++ ...+|++|
T Consensus 165 ~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL 243 (607)
T 3bk7_A 165 QNYFERLKNGEIRPV-VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAAL 243 (607)
T ss_dssp HHHHHHHHHTSCCCE-EECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcceE-EeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHH
Confidence 011 2222100 0123456778888766555544445444 45577777
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|+|+|||||++|+|+..... ...++..+.+. |.++|++||+.+++..++++..+.
T Consensus 244 --~~~P~lLlLDEPTs~LD~~~~~~-l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 244 --LRKAHFYFFDEPSSYLDIRQRLK-VARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp --HSCCSEEEEECTTTTCCHHHHHH-HHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred --hcCCCEEEEECCcccCCHHHHHH-HHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEE
Confidence 89999999999999999777554 45567777665 899999999999998888765444
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.53 E-value=3.1e-14 Score=171.26 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=105.6
Q ss_pred cceeeeeecCCCCc-ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh---------------------
Q 040956 795 GLWHPFALGENGGL-PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA--------------------- 852 (1085)
Q Consensus 795 ~lrhp~~~~~~~~~-~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila--------------------- 852 (1085)
|+.+.| ++. ++.+|++ .+. +|++++|+||||||||||||+++++....
T Consensus 26 ~ls~~y-----g~~~~~l~~vs-~i~----~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~ 95 (538)
T 1yqt_A 26 DCVHRY-----GVNAFVLYRLP-VVK----EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95 (538)
T ss_dssp CEEEEC-----STTCCEEECCC-CCC----TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHH
T ss_pred CcEEEE-----CCccccccCcC-cCC----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHH
Confidence 555555 333 5888998 776 78999999999999999999997742100
Q ss_pred -----------hccccccccccc------------------cchHHHHHHHcCCccccccccchhhH---HhHHHHHHHH
Q 040956 853 -----------QLGCFVPCEMCV------------------LSLADTIFTRLGATDRIMTGESTFLV---ECTETASVLQ 900 (1085)
Q Consensus 853 -----------qiG~~VPa~~a~------------------i~~~d~I~trig~~D~i~~~~Stf~~---Em~ela~iL~ 900 (1085)
.+| ++++.... ...++.++.++|..+......++++. ....+|++|
T Consensus 96 ~~~~~~~~~~~~~~-~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL- 173 (538)
T 1yqt_A 96 NYFEKLKNGEIRPV-VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAAL- 173 (538)
T ss_dssp HHHHHHHTTSCCCE-EECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhh-hhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHH-
Confidence 011 22221100 01244577788876554444444444 455577777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+.+|+|+|||||++|+|+..... ...+++.+.+. |.++|++||+.+++..++++..+.
T Consensus 174 -~~~P~lLlLDEPTs~LD~~~~~~-l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl 231 (538)
T 1yqt_A 174 -LRNATFYFFDEPSSYLDIRQRLN-AARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVV 231 (538)
T ss_dssp -HSCCSEEEEESTTTTCCHHHHHH-HHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred -hcCCCEEEEECCcccCCHHHHHH-HHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 89999999999999999776544 45577777664 899999999999999888876543
No 48
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.49 E-value=4.1e-13 Score=163.09 Aligned_cols=155 Identities=20% Similarity=0.174 Sum_probs=106.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|-. ++..+++|++|+++ +|++++|+||||||||||+|+++++.
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~i~l~i~----~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG---KEKPALSHVSFSIP----QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412 (582)
T ss_pred CeEEEEEEEEEcCC---CCccccccceEEEC----CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH
Confidence 46999999998820 12579999999998 89999999999999999999997643
Q ss_pred --HHhhccccccccccc--cchHHHH----------------HHHcCCccccc--------------cccchhhHHhHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTI----------------FTRLGATDRIM--------------TGESTFLVECTET 895 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I----------------~trig~~D~i~--------------~~~Stf~~Em~el 895 (1085)
+..++| |||++..- .++.+.| ....+..+.+. ..+|..+.....+
T Consensus 413 ~~~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~i 491 (582)
T 3b5x_A 413 TNLRRHFA-LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491 (582)
T ss_pred HHHhcCeE-EEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHH
Confidence 123466 78876421 1222222 22333322211 1334444444457
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|++| +.+|+++|||||++|.|+.....+. ..+..+. + |+|+|++||+.+.+. .+++
T Consensus 492 Aral--~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~-~-~~tvi~itH~~~~~~-~~d~ 547 (582)
T 3b5x_A 492 ARAL--LRDAPVLILDEATSALDTESERAIQ-AALDELQ-K-NKTVLVIAHRLSTIE-QADE 547 (582)
T ss_pred HHHH--HcCCCEEEEECccccCCHHHHHHHH-HHHHHHc-C-CCEEEEEecCHHHHH-hCCE
Confidence 7777 8999999999999999987765544 3444443 3 789999999998876 4554
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.48 E-value=2.1e-13 Score=165.63 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=107.2
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|-. +...+++|++|+++ +|++++|+||||||||||+|++++..
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~----~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIE----KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 410 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEEC----TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEEC----CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 35999999988721 23579999999998 89999999999999999999997643
Q ss_pred --HHhhccccccccccc--cchHHHH---------------HHHcCCcccc-----------c---cccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTI---------------FTRLGATDRI-----------M---TGESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I---------------~trig~~D~i-----------~---~~~Stf~~Em~ela 896 (1085)
+..++| |||++..- .++.++| ....+..+.+ . ..+|..+.....+|
T Consensus 411 ~~~r~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 411 GSLRNQIG-LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp HHHHHTEE-EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred HHHhhheE-EEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 223566 88886422 2333333 1222222211 1 12444444445577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|+++|||||++|.|+..... ....+..+. .++|+|++||+.+.+.. +++.
T Consensus 490 ral--~~~p~illlDEpts~LD~~~~~~-i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i 545 (578)
T 4a82_A 490 RIF--LNNPPILILDEATSALDLESESI-IQEALDVLS--KDRTTLIVAHRLSTITH-ADKI 545 (578)
T ss_dssp HHH--HHCCSEEEEESTTTTCCHHHHHH-HHHHHHHHT--TTSEEEEECSSGGGTTT-CSEE
T ss_pred HHH--HcCCCEEEEECccccCCHHHHHH-HHHHHHHHc--CCCEEEEEecCHHHHHc-CCEE
Confidence 777 88999999999999999876443 344555543 27899999999998754 5543
No 50
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=1.8e-13 Score=166.68 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=108.5
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|- ++..+++|++|+++ +|++++|+||||||||||+|+++++.
T Consensus 354 ~i~~~~v~~~y~----~~~~~l~~isl~i~----~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 354 EIEFKNVWFSYD----KKKPVLKDITFHIK----PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CEEEEEEECCSS----SSSCSCCSEEEECC----TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEECC----CCCccccceEEEEc----CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHH
Confidence 599999998872 24679999999998 89999999999999999999997643
Q ss_pred -HHhhcccccccccc--ccchHHHHHH---------------HcCCcccc---c-----------cccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMC--VLSLADTIFT---------------RLGATDRI---M-----------TGESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a--~i~~~d~I~t---------------rig~~D~i---~-----------~~~Stf~~Em~ela~ 897 (1085)
+..++| |||++.. ..++.+.|.- ..+..+.+ . ..+|..+.....+|+
T Consensus 426 ~~r~~i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 426 SLRSSIG-IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp HHHHHEE-EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhceE-EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 234566 8888643 2244444421 11111111 1 123444444455777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+| +.+|+++|||||++|.|+.....+.. .+..+. + ++|+|++||+.+.+.. +++.
T Consensus 505 al--~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~-~-~~t~i~itH~l~~~~~-~d~i 559 (598)
T 3qf4_B 505 AF--LANPKILILDEATSNVDTKTEKSIQA-AMWKLM-E-GKTSIIIAHRLNTIKN-ADLI 559 (598)
T ss_dssp HH--HTCCSEEEECCCCTTCCHHHHHHHHH-HHHHHH-T-TSEEEEESCCTTHHHH-CSEE
T ss_pred HH--hcCCCEEEEECCccCCCHHHHHHHHH-HHHHHc-C-CCEEEEEecCHHHHHc-CCEE
Confidence 77 89999999999999999887666544 444553 3 8999999999998765 5543
No 51
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.48 E-value=5.4e-13 Score=162.49 Aligned_cols=157 Identities=22% Similarity=0.221 Sum_probs=107.4
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH---------------------
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV--------------------- 849 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~--------------------- 849 (1085)
|+++|+.+.|-. ..+..+++|++|+++ +|++++|+||||||||||+|+++++.
T Consensus 342 i~~~~v~~~y~~--~~~~~vl~~isl~i~----~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAYPA--RPEVPIFQDFSLSIP----SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEECSS--CTTSEEEEEEEEEEC----TTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEeCC--CCCCccccceEEEEc----CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHH
Confidence 999999988821 012469999999998 79999999999999999999997643
Q ss_pred HHhhcccccccccc--ccchHHHH------------------HHHcCCccccc--------------cccchhhHHhHHH
Q 040956 850 ILAQLGCFVPCEMC--VLSLADTI------------------FTRLGATDRIM--------------TGESTFLVECTET 895 (1085)
Q Consensus 850 ilaqiG~~VPa~~a--~i~~~d~I------------------~trig~~D~i~--------------~~~Stf~~Em~el 895 (1085)
+..++| |||++.. ..++.+.| ....+..+.+. ..+|..+.....+
T Consensus 416 ~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 416 LRSKIG-TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp HHHSEE-EECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred HHhceE-EEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 123566 7887642 11233332 23333322110 2344444444557
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
|++| +.+|+++|||||++|.|+.....+ ...+..+.+ ++|+|++||+.+.+.. +++..+
T Consensus 495 Aral--~~~p~illlDEpts~LD~~~~~~i-~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~ 553 (595)
T 2yl4_A 495 ARAL--LKNPKILLLDEATSALDAENEYLV-QEALDRLMD--GRTVLVIAHRLSTIKN-ANMVAV 553 (595)
T ss_dssp HHHH--HHCCSEEEEECCCSSCCHHHHHHH-HHHHHHHHT--TSEEEEECCCHHHHHH-SSEEEE
T ss_pred HHHH--HcCCCEEEEECcccCCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHc-CCEEEE
Confidence 7777 889999999999999998765443 445555543 7899999999998764 665433
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.47 E-value=1.9e-13 Score=172.45 Aligned_cols=155 Identities=18% Similarity=0.109 Sum_probs=109.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH-------hhcccccccc
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL-------AQLGCFVPCE 861 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il-------aqiG~~VPa~ 861 (1085)
..|...++.+.| ++..+++|++|.+. +|++++|+||||||||||||+|++-.+. ..++ |+++.
T Consensus 434 ~~L~~~~ls~~y-----g~~~iL~~vsl~I~----~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~-~v~q~ 503 (986)
T 2iw3_A 434 EDLCNCEFSLAY-----GAKILLNKTQLRLK----RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV-YVEHD 503 (986)
T ss_dssp CEEEEEEEEEEE-----TTEEEEEEEEEEEE----TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEE-ETTCC
T ss_pred ceeEEeeEEEEE-----CCEEeEecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEE-EEccc
Confidence 457777888888 56789999999998 7999999999999999999999741111 0122 55543
Q ss_pred c----cccch--------------HHHHHHHcCCc-cccc---cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 040956 862 M----CVLSL--------------ADTIFTRLGAT-DRIM---TGESTFLVECTETASVLQKATQDSLVILDELGRGTST 919 (1085)
Q Consensus 862 ~----a~i~~--------------~d~I~trig~~-D~i~---~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~ 919 (1085)
. ..+++ +..++..+|.. +... ..+|..+.....++++| +.+|+|+|||||++|+|+
T Consensus 504 ~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL--~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV--LRNADILLLDEPTNHLDT 581 (986)
T ss_dssp CCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHH--HTTCSEEEEESTTTTCCH
T ss_pred ccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHH--hcCCCEEEEECCccCCCH
Confidence 1 11222 23456677774 3333 34455555555677777 899999999999999886
Q ss_pred HHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 920 FDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 920 ~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.... .+.+.|.+ .|.++|++||+.+++..++++..+
T Consensus 582 ~~~~----~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~ 617 (986)
T 2iw3_A 582 VNVA----WLVNYLNT-CGITSITISHDSVFLDNVCEYIIN 617 (986)
T ss_dssp HHHH----HHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHH----HHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEE
Confidence 6543 33344444 489999999999999988876544
No 53
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.47 E-value=4.4e-13 Score=162.85 Aligned_cols=155 Identities=22% Similarity=0.154 Sum_probs=107.5
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|-. ++..+++|++|+++ +|++++|+||||||||||+|+++++.
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~v~~~i~----~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 340 GDLEFRNVTFTYPG---REVPALRNINLKIP----AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412 (582)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEEC----TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred CcEEEEEEEEEcCC---CCCccccceeEEEc----CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH
Confidence 35999999988810 12579999999998 79999999999999999999997643
Q ss_pred --HHhhcccccccccc--ccchHHHH----------------HHHcCCccccc--------------cccchhhHHhHHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADTI----------------FTRLGATDRIM--------------TGESTFLVECTET 895 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~I----------------~trig~~D~i~--------------~~~Stf~~Em~el 895 (1085)
+..++| |||++.. ..++.|.| ....+..+.+. ..+|..+.....+
T Consensus 413 ~~~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i 491 (582)
T 3b60_A 413 ASLRNQVA-LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 491 (582)
T ss_dssp HHHHHTEE-EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred HHHHhhCe-EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 123566 8887642 12333333 22233322211 2344444444557
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
|++| +.+|+++|||||++|.|+.....+. ..+..+. + ++|+|++||+.+.+. .+++
T Consensus 492 Aral--~~~p~illlDEpts~LD~~~~~~i~-~~l~~~~-~-~~tvi~itH~~~~~~-~~d~ 547 (582)
T 3b60_A 492 ARAL--LRDSPILILDEATSALDTESERAIQ-AALDELQ-K-NRTSLVIAHRLSTIE-QADE 547 (582)
T ss_dssp HHHH--HHCCSEEEEETTTSSCCHHHHHHHH-HHHHHHH-T-TSEEEEECSCGGGTT-TCSE
T ss_pred HHHH--HhCCCEEEEECccccCCHHHHHHHH-HHHHHHh-C-CCEEEEEeccHHHHH-hCCE
Confidence 7777 8899999999999999987765544 4455554 3 889999999998765 3554
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=6.9e-14 Score=170.10 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=99.5
Q ss_pred ccccccccCCCCC-CCCCCEEEEEeCCCCCcchHHhhhhhHHHHh--------hcccccccccc---ccchHH-------
Q 040956 809 PVPNDILLGEDSD-DCLPRTLLLTGPNMGGKSTLLRATCLAVILA--------QLGCFVPCEMC---VLSLAD------- 869 (1085)
Q Consensus 809 ~V~ndisL~~~~~-~~~g~~~iItGpNgsGKSTLLR~i~~i~ila--------qiG~~VPa~~a---~i~~~d------- 869 (1085)
.+.+|++|.+..+ -..|++++|+||||+|||||||+++++.-.. .++ |+|+... ..++.+
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~-~~~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS-MKPQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEE-EECSSCCCCCCSBHHHHHHHHCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEE-EecccccccCCccHHHHHHHHhh
Confidence 4677888887621 0134889999999999999999998854211 122 5555421 112222
Q ss_pred ----------HHHHHcCCccccccccchhhHHh---HHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh
Q 040956 870 ----------TIFTRLGATDRIMTGESTFLVEC---TETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER 936 (1085)
Q Consensus 870 ----------~I~trig~~D~i~~~~Stf~~Em---~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~ 936 (1085)
.++..++..+......+++++++ ..+|++| +.+|+|+|||||++|.|+.....+ ..++..+..+
T Consensus 440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL--~~~p~lLlLDEPT~gLD~~~~~~i-~~ll~~l~~~ 516 (608)
T 3j16_B 440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL--GIPADIYLIDEPSAYLDSEQRIIC-SKVIRRFILH 516 (608)
T ss_dssp STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHT--TSCCSEEEECCTTTTCCHHHHHHH-HHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHh
Confidence 23444554444444444444444 4466666 899999999999999998776554 4566666554
Q ss_pred cCceEEEEEechhHHHhhcCccce
Q 040956 937 INCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 937 ~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.|.|+|++|||++++..++++..+
T Consensus 517 ~g~tviivtHdl~~~~~~aDrviv 540 (608)
T 3j16_B 517 NKKTAFIVEHDFIMATYLADKVIV 540 (608)
T ss_dssp HTCEEEEECSCHHHHHHHCSEEEE
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEE
Confidence 589999999999999998887544
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.46 E-value=9.3e-13 Score=160.15 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=108.1
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+.+.|- .+...+++|++|+++ +|++++|+||||||||||+|+++++.
T Consensus 340 ~~i~~~~v~~~y~---~~~~~~l~~isl~i~----~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 340 GSVSFENVEFRYF---ENTDPVLSGVNFSVK----PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL 412 (587)
T ss_dssp CCEEEEEEEECSS---SSSCCSEEEEEEEEC----TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCH
T ss_pred CcEEEEEEEEEcC---CCCCcceeceEEEEc----CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCH
Confidence 3599999988872 124679999999998 89999999999999999999997643
Q ss_pred --HHhhccccccccccc--cchHHHHH---------------HHcCCccc-----------ccc---ccchhhHHhHHHH
Q 040956 850 --ILAQLGCFVPCEMCV--LSLADTIF---------------TRLGATDR-----------IMT---GESTFLVECTETA 896 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a~--i~~~d~I~---------------trig~~D~-----------i~~---~~Stf~~Em~ela 896 (1085)
+..++| |||++..- .++.++|. ...+..+. +.. .+|..+.....+|
T Consensus 413 ~~~r~~i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 413 KDLRGHIS-AVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp HHHHHHEE-EECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred HHHHhheE-EECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHH
Confidence 234567 88886422 23333321 11122111 111 2344444444577
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 897 SVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 897 ~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
++| +.+|+++|||||++|.|+.....+... +..+. .++|+|++||+.+.+. .+++.
T Consensus 492 Ral--~~~p~illlDEpts~LD~~~~~~i~~~-l~~~~--~~~tvi~itH~l~~~~-~~d~i 547 (587)
T 3qf4_A 492 RAL--VKKPKVLILDDCTSSVDPITEKRILDG-LKRYT--KGCTTFIITQKIPTAL-LADKI 547 (587)
T ss_dssp HHH--HTCCSEEEEESCCTTSCHHHHHHHHHH-HHHHS--TTCEEEEEESCHHHHT-TSSEE
T ss_pred HHH--HcCCCEEEEECCcccCCHHHHHHHHHH-HHHhC--CCCEEEEEecChHHHH-hCCEE
Confidence 777 899999999999999998776655543 44442 3899999999999875 45543
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.6e-13 Score=166.77 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=98.1
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccc------------------------------
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCF------------------------------ 857 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~------------------------------ 857 (1085)
.++.+++.. .. +|++++|+||||+|||||||+|+++.- ...|..
T Consensus 91 ~~~l~~l~~-~~----~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 164 (608)
T 3j16_B 91 SFKLHRLPT-PR----PGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDI 164 (608)
T ss_dssp SCEEECCCC-CC----TTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSC
T ss_pred ceeecCCCC-CC----CCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhh
Confidence 455555542 33 689999999999999999999976431 111110
Q ss_pred ----ccccc-----------------------cccchHHHHHHHcCCccccccccchhhHH---hHHHHHHHHhCCCCcE
Q 040956 858 ----VPCEM-----------------------CVLSLADTIFTRLGATDRIMTGESTFLVE---CTETASVLQKATQDSL 907 (1085)
Q Consensus 858 ----VPa~~-----------------------a~i~~~d~I~trig~~D~i~~~~Stf~~E---m~ela~iL~~at~~sL 907 (1085)
.|... .....++.++.++|..+......++++.+ ...+|++| +.+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL--~~~p~l 242 (608)
T 3j16_B 165 KAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC--VQEADV 242 (608)
T ss_dssp CCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH--HSCCSE
T ss_pred hhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH--HhCCCE
Confidence 01000 00023445777788766555555555544 45577777 899999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 908 VILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 908 vLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
+|||||++|+|+.....+ ..++..+.++ |.++|++||+++++..++++..+.
T Consensus 243 lllDEPts~LD~~~~~~l-~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl 294 (608)
T 3j16_B 243 YMFDEPSSYLDVKQRLNA-AQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCII 294 (608)
T ss_dssp EEEECTTTTCCHHHHHHH-HHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred EEEECcccCCCHHHHHHH-HHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999998775543 4566666654 889999999999999988876554
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.41 E-value=6.8e-13 Score=159.48 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=91.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc--------------------------------------cccccc---
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--------------------------------------FVPCEM--- 862 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--------------------------------------~VPa~~--- 862 (1085)
+|++++|+||||||||||||+++++.. ...|. +++...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 689999999999999999999977421 00010 110000
Q ss_pred -----------cccchHHHHHHHcCCccccccccchhhH---HhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHH
Q 040956 863 -----------CVLSLADTIFTRLGATDRIMTGESTFLV---ECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYA 928 (1085)
Q Consensus 863 -----------a~i~~~d~I~trig~~D~i~~~~Stf~~---Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~a 928 (1085)
......+.++..+|..+......+++++ ....+|++| +.+|+++|||||++|+|+.....+ ..
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL--~~~p~illlDEPts~LD~~~~~~l-~~ 179 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASL--LREADVYIFDQPSSYLDVRERMNM-AK 179 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH--HSCCSEEEEESTTTTCCHHHHHHH-HH
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH--HcCCCEEEEECCcccCCHHHHHHH-HH
Confidence 0011245577778876555444444444 455577777 899999999999999998775554 45
Q ss_pred HHHHHHHhcCceEEEEEechhHHHhhcCcccee
Q 040956 929 VFRQLVERINCRLLFATHYHPLTKEFASHPHVT 961 (1085)
Q Consensus 929 vle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~ 961 (1085)
++..+. + |.++|++||+++++..++++..+.
T Consensus 180 ~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl 210 (538)
T 3ozx_A 180 AIRELL-K-NKYVIVVDHDLIVLDYLTDLIHII 210 (538)
T ss_dssp HHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEE
T ss_pred HHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEe
Confidence 666664 3 889999999999999888876554
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.40 E-value=4.9e-13 Score=165.06 Aligned_cols=74 Identities=16% Similarity=0.081 Sum_probs=55.6
Q ss_pred ccccchhhHHhHHHHHHHHhCCCCc--EEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 882 MTGESTFLVECTETASVLQKATQDS--LVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 882 ~~~~Stf~~Em~ela~iL~~at~~s--LvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
...+|..+..+..+|++| +.+|+ |+|||||++|+|+.....+. .++..+.++ |.|+|++|||++++.. +++..
T Consensus 200 ~~~LSGGe~QRv~iArAL--~~~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~-g~tvi~vtHd~~~~~~-~d~ii 274 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQI--GSRLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDL-GNTLIVVEHDEDTMLA-ADYLI 274 (670)
T ss_dssp GGGSCHHHHHHHHHHHHH--HTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHT-TCEEEEECCCHHHHHH-CSEEE
T ss_pred cccCCHHHHHHHHHHHHH--hhCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHc-CCEEEEEeCCHHHHhh-CCEEE
Confidence 344555555566688888 77776 99999999999988866544 566777665 8999999999998764 66544
Q ss_pred e
Q 040956 960 V 960 (1085)
Q Consensus 960 V 960 (1085)
+
T Consensus 275 ~ 275 (670)
T 3ux8_A 275 D 275 (670)
T ss_dssp E
T ss_pred E
Confidence 3
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.37 E-value=5.4e-13 Score=168.35 Aligned_cols=82 Identities=21% Similarity=0.108 Sum_probs=57.1
Q ss_pred HHHHHcCCcccc-----ccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEE
Q 040956 870 TIFTRLGATDRI-----MTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFA 944 (1085)
Q Consensus 870 ~I~trig~~D~i-----~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~a 944 (1085)
.++.++|..+.. ...+|..+.....++++| +.+|.|+|||||++|+|.... ..+++.|.+ .+.++|++
T Consensus 882 ~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL--~~~P~LLLLDEPT~gLD~~s~----~~L~~~L~~-~g~tVIiI 954 (986)
T 2iw3_A 882 EHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGT--WQRPHLIVLDEPTNYLDRDSL----GALSKALKE-FEGGVIII 954 (986)
T ss_dssp HHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHH--TTCCSEEEEECGGGTCCHHHH----HHHHHHHHS-CSSEEEEE
T ss_pred HHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHH--HhCCCEEEEECCccCCCHHHH----HHHHHHHHH-hCCEEEEE
Confidence 456667765322 234444444455577777 899999999999999986553 344444443 47799999
Q ss_pred EechhHHHhhcCcc
Q 040956 945 THYHPLTKEFASHP 958 (1085)
Q Consensus 945 TH~~el~~~~~~~~ 958 (1085)
||+.+++..++++.
T Consensus 955 SHD~e~v~~l~DrV 968 (986)
T 2iw3_A 955 THSAEFTKNLTEEV 968 (986)
T ss_dssp CSCHHHHTTTCCEE
T ss_pred ECCHHHHHHhCCEE
Confidence 99999998887754
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.36 E-value=4.4e-13 Score=137.22 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=77.6
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-HH---hhccccccccccccchHH----H------HHHHcCCc
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-IL---AQLGCFVPCEMCVLSLAD----T------IFTRLGAT 878 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-il---aqiG~~VPa~~a~i~~~d----~------I~trig~~ 878 (1085)
|++|.+. +|++++|+||||||||||+|++..-. +. .-.| ++++......+.. . ...+.|..
T Consensus 1 ~vsl~i~----~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 75 (171)
T 4gp7_A 1 SMKLTIP----ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG-LMSDDENDQTVTGAAFDVLHYIVSKRLQLGKL 75 (171)
T ss_dssp CEEEEEE----SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH-HHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCC
T ss_pred CccccCC----CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH-HhcCcccchhhHHHHHHHHHHHHHHHHhCCCe
Confidence 4667766 78999999999999999999532100 00 0002 3333322221111 1 11223322
Q ss_pred cccc--cccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHH---------------HHHHHHHHHHHHHhcCceE
Q 040956 879 DRIM--TGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDG---------------YAIAYAVFRQLVERINCRL 941 (1085)
Q Consensus 879 D~i~--~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg---------------~aia~avle~L~~~~~~ti 941 (1085)
.... ...|........+|+++ +.+|.+++||||+.|.++... ......++..+.++ |.++
T Consensus 76 ~~~~~~~~~s~g~~qrv~iAral--~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tv 152 (171)
T 4gp7_A 76 TVVDATNVQESARKPLIEMAKDY--HCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRY 152 (171)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHT--TCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSE
T ss_pred EEEECCCCCHHHHHHHHHHHHHc--CCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcE
Confidence 1111 12244444455566666 899999999999666665421 12234445556565 8999
Q ss_pred EEEEechhHHHhh
Q 040956 942 LFATHYHPLTKEF 954 (1085)
Q Consensus 942 L~aTH~~el~~~~ 954 (1085)
|++||+.+++..+
T Consensus 153 i~vtH~~~~~~~~ 165 (171)
T 4gp7_A 153 VYILNSPEEVEEV 165 (171)
T ss_dssp EEEECSHHHHHHE
T ss_pred EEEeCCHHHhhhh
Confidence 9999999988754
No 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.28 E-value=1.4e-11 Score=152.21 Aligned_cols=71 Identities=25% Similarity=0.169 Sum_probs=52.4
Q ss_pred cccchhhHHhHHHHHHHHhCCC---CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 883 TGESTFLVECTETASVLQKATQ---DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 883 ~~~Stf~~Em~ela~iL~~at~---~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
..+|..+.....+|++| +.+ |.|+|||||++|+|+.....+. .++..+.+. |.|+|++|||++++. .+++.
T Consensus 542 ~~LSgG~~qrv~iAraL--~~~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~-g~tvi~vtHd~~~~~-~~d~i 615 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAEL--HRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN-GDTVLVIEHNLDVIK-TADYI 615 (670)
T ss_dssp GGCCHHHHHHHHHHHHH--HSCCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHT-TCEEEEECCCHHHHT-TCSEE
T ss_pred hhCCHHHHHHHHHHHHH--hhCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCHHHHH-hCCEE
Confidence 34555555556677877 544 5799999999999988866544 466677665 899999999999874 46553
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.25 E-value=4.6e-11 Score=157.03 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=106.7
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+.+.|-. ..+..+++|++|.+. +|++++|+||||||||||++++.+..
T Consensus 387 ~i~~~~v~~~y~~--~~~~~vL~~isl~i~----~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 387 NLEFKNIHFSYPS--RKEVQILKGLNLKVK----SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CEEEEEEEECCSS--TTSCCSEEEEEEEEC----TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCC--CCCCcceecceEEEc----CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHH
Confidence 5999999988821 113479999999998 89999999999999999999996532
Q ss_pred -HHhhcccccccccc--ccchHHHHH---------------HHcCCccc-----------ccc---ccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMC--VLSLADTIF---------------TRLGATDR-----------IMT---GESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a--~i~~~d~I~---------------trig~~D~-----------i~~---~~Stf~~Em~ela~ 897 (1085)
+..++| +||++.. .-++.++|. ...++.+. +.. .+|........+|+
T Consensus 461 ~~r~~i~-~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiAR 539 (1284)
T 3g5u_A 461 YLREIIG-VVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIAR 539 (1284)
T ss_dssp HHHHHEE-EECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHH
T ss_pred HHHhheE-EEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHH
Confidence 234567 8888652 123344332 11122111 111 24444444555777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPH 959 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~ 959 (1085)
+| +.+|+++|||||+++.|+... ......+..+. .|+|+|++||+++.+.. +++..
T Consensus 540 al--~~~p~iliLDEpts~LD~~~~-~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~ 595 (1284)
T 3g5u_A 540 AL--VRNPKILLLDEATSALDTESE-AVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIA 595 (1284)
T ss_dssp HH--HHCCSEEEEESTTCSSCHHHH-HHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEE
T ss_pred HH--hcCCCEEEEECCCCCCCHHHH-HHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEE
Confidence 77 889999999999999987653 33444454443 38999999999998865 55443
No 63
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.25 E-value=1.1e-11 Score=162.96 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=105.0
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH-------------------
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV------------------- 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~------------------- 849 (1085)
..|+++|+...|-.. .+..+++|++|.+. +|++++|+||||||||||++++.++.
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~----~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVK----KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEEC----SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEc----CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCH
Confidence 359999998887211 12369999999998 89999999999999999999996542
Q ss_pred --HHhhcccccccccc--ccchHHHH-----------------HHHcCCcccc-----------cc---ccchhhHHhHH
Q 040956 850 --ILAQLGCFVPCEMC--VLSLADTI-----------------FTRLGATDRI-----------MT---GESTFLVECTE 894 (1085)
Q Consensus 850 --ilaqiG~~VPa~~a--~i~~~d~I-----------------~trig~~D~i-----------~~---~~Stf~~Em~e 894 (1085)
+..++| |||++.. ..++.++| ....++.+.+ .. .+|........
T Consensus 1103 ~~~r~~i~-~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~ 1181 (1284)
T 3g5u_A 1103 QWLRAQLG-IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181 (1284)
T ss_dssp HHHTTSCE-EEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHH
T ss_pred HHHHhceE-EECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHH
Confidence 234566 8888652 12222222 1222222211 11 23333333445
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
+|++| +.+|+++|||||++|.|+.....+ ...++.+ . .|+|+|++||+++.+.. +++.
T Consensus 1182 iARal--~~~p~iLiLDEpTs~lD~~~~~~i-~~~l~~~-~-~~~tvi~isH~l~~i~~-~dri 1239 (1284)
T 3g5u_A 1182 IARAL--VRQPHILLLDEATSALDTESEKVV-QEALDKA-R-EGRTCIVIAHRLSTIQN-ADLI 1239 (1284)
T ss_dssp HHHHH--HHCCSSEEEESCSSSCCHHHHHHH-HHHHHHH-S-SSSCEEEECSCTTGGGS-CSEE
T ss_pred HHHHH--HcCCCEEEEeCCcccCCHHHHHHH-HHHHHHh-C-CCCEEEEEecCHHHHHc-CCEE
Confidence 77777 889999999999999997764443 3344443 2 38899999999998754 5543
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.20 E-value=6.7e-11 Score=155.88 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=106.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+.+.|-.. .+.+|++|++|.++ +|+.++|+||+|||||||++.+.+..
T Consensus 415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~----~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 415 DITVENVHFTYPSR--PDVPILRGMNLRVN----AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CEEEEEEEECCSSS--TTSCSEEEEEEEEC----TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHH
T ss_pred cEEEEEeeeeCCCC--CCCceeeceEEeec----CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHH
Confidence 59999999888321 24689999999998 89999999999999999999995432
Q ss_pred -HHhhcccccccccc--ccchHHHHH---------------HHcCCccccc--------------cccchhhHHhHHHHH
Q 040956 850 -ILAQLGCFVPCEMC--VLSLADTIF---------------TRLGATDRIM--------------TGESTFLVECTETAS 897 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a--~i~~~d~I~---------------trig~~D~i~--------------~~~Stf~~Em~ela~ 897 (1085)
+..++| |||++.. .-++.|+|. ...++.+.+. ..+|........+|+
T Consensus 489 ~lr~~i~-~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 489 FLRKNVA-VVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIAR 567 (1321)
T ss_dssp HHHHHEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHH
T ss_pred HHhhccc-ccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHH
Confidence 345677 8998753 223344331 1112222111 123333344445777
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
++ ..+++++|||||+++.|+.. ..+....+..+.+ ++|+|++||.+..+..
T Consensus 568 Al--~~~~~IliLDE~tSaLD~~t-e~~i~~~l~~~~~--~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 568 AL--VRNPKILLLDEATSALDAES-EGIVQQALDKAAK--GRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp HH--TTCCSEEEEESTTTTSCTTT-HHHHHHHHHHHHT--TSEEEEECSCTTTTTT
T ss_pred HH--ccCCCEEEEecccccCCHHH-HHHHHHHHHHHhC--CCEEEEEcccHHHHHh
Confidence 77 89999999999999999775 3445555555543 7899999999987654
No 65
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.18 E-value=3.9e-12 Score=134.88 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=65.7
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh------------------hccccccccc-ccc-ch
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA------------------QLGCFVPCEM-CVL-SL 867 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila------------------qiG~~VPa~~-a~i-~~ 867 (1085)
..+++|+ . +|++++|+||||||||||||+++++ -.. ++| |||+.. ..+ ..
T Consensus 13 ~~~l~~i----~----~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig-~v~q~~~enl~~~ 82 (208)
T 3b85_A 13 KHYVDAI----D----TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLG-FLPGTLNEKIDPY 82 (208)
T ss_dssp HHHHHHH----H----HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCC-SSCC------CTT
T ss_pred HHHHHhc----c----CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceE-EecCCHHHHHHHH
Confidence 4566775 2 5789999999999999999999987 321 123 455432 011 11
Q ss_pred HHHHHHHcCC-cc--c---cccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceE
Q 040956 868 ADTIFTRLGA-TD--R---IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRL 941 (1085)
Q Consensus 868 ~d~I~trig~-~D--~---i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~ti 941 (1085)
...++..+.. .+ . +... ...+.....+|++| +.+|+++|||||++| + ......++..+ + .++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL--~~~p~lllLDEPts~-~----~~~l~~~l~~l-~-~g~ti 152 (208)
T 3b85_A 83 LRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGR--TLNDAFVILDEAQNT-T----PAQMKMFLTRL-G-FGSKM 152 (208)
T ss_dssp THHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTC--CBCSEEEEECSGGGC-C----HHHHHHHHTTB-C-TTCEE
T ss_pred HHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHH--hcCCCEEEEeCCccc-c----HHHHHHHHHHh-c-CCCEE
Confidence 1111111110 00 0 0000 00111122355555 889999999999888 2 22234445444 3 37888
Q ss_pred EEEEechhHHHh
Q 040956 942 LFATHYHPLTKE 953 (1085)
Q Consensus 942 L~aTH~~el~~~ 953 (1085)
| +||+.++++.
T Consensus 153 i-vtHd~~~~~~ 163 (208)
T 3b85_A 153 V-VTGDITQVDL 163 (208)
T ss_dssp E-EEEC------
T ss_pred E-EECCHHHHhC
Confidence 8 9999988764
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.17 E-value=8.8e-11 Score=146.94 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=55.9
Q ss_pred HHHHcCCcc-ccccccchhhHHhH---HHHHHHHhCCC---CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 040956 871 IFTRLGATD-RIMTGESTFLVECT---ETASVLQKATQ---DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943 (1085)
Q Consensus 871 I~trig~~D-~i~~~~Stf~~Em~---ela~iL~~at~---~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~ 943 (1085)
++.++|... .+....++++.+.+ .+|++| +.+ +.|+|||||++|+|..+...+ ..++..|.+. |.++|+
T Consensus 713 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL--~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~~-G~tVIv 788 (842)
T 2vf7_A 713 TLREVGLGYLRLGQPATELSGGEAQRIKLATEL--RRSGRGGTVYVLDEPTTGLHPADVERL-QRQLVKLVDA-GNTVIA 788 (842)
T ss_dssp HHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTT--SSCCSSCEEEEEECTTTTCCHHHHHHH-HHHHHHHHHT-TCEEEE
T ss_pred HHHHcCCCcccccCCcccCCHHHHHHHHHHHHH--HhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEE
Confidence 344455433 22333445554444 355555 554 799999999999998886554 4566777765 899999
Q ss_pred EEechhHHHhhcCcc
Q 040956 944 ATHYHPLTKEFASHP 958 (1085)
Q Consensus 944 aTH~~el~~~~~~~~ 958 (1085)
+||+++++ ..+++.
T Consensus 789 isHdl~~i-~~aDri 802 (842)
T 2vf7_A 789 VEHKMQVV-AASDWV 802 (842)
T ss_dssp ECCCHHHH-TTCSEE
T ss_pred EcCCHHHH-HhCCEE
Confidence 99999998 556653
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.17 E-value=1.2e-10 Score=146.08 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=56.0
Q ss_pred HHHHcCCcc-ccccccchhhHH---hHHHHHHHHhCCC---CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 040956 871 IFTRLGATD-RIMTGESTFLVE---CTETASVLQKATQ---DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943 (1085)
Q Consensus 871 I~trig~~D-~i~~~~Stf~~E---m~ela~iL~~at~---~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~ 943 (1085)
++.++|... .......+++.+ ...+|++| +.+ |.|+|||||++|+|+.+...+ +.++..|.+. |.++|+
T Consensus 828 ~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL--~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~~-G~TVIv 903 (972)
T 2r6f_A 828 TLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL--HRRSNGRTLYILDEPTTGLHVDDIARL-LDVLHRLVDN-GDTVLV 903 (972)
T ss_dssp HHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHH--SSCCCSCEEEEEECTTTTCCHHHHHHH-HHHHHHHHHT-TCEEEE
T ss_pred HHHHcCCCcccccCchhhCCHHHHHHHHHHHHH--hcCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEE
Confidence 445556544 333334444444 44466666 644 699999999999998886554 4566677665 899999
Q ss_pred EEechhHHHhhcCc
Q 040956 944 ATHYHPLTKEFASH 957 (1085)
Q Consensus 944 aTH~~el~~~~~~~ 957 (1085)
+||+++++. .+++
T Consensus 904 isHdl~~i~-~aDr 916 (972)
T 2r6f_A 904 IEHNLDVIK-TADY 916 (972)
T ss_dssp ECCCHHHHT-TCSE
T ss_pred EcCCHHHHH-hCCE
Confidence 999999864 4554
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.15 E-value=1.9e-10 Score=144.88 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=55.5
Q ss_pred HHHHcCCcc-ccccccchhhHH---hHHHHHHHHhCCC---CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 040956 871 IFTRLGATD-RIMTGESTFLVE---CTETASVLQKATQ---DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLF 943 (1085)
Q Consensus 871 I~trig~~D-~i~~~~Stf~~E---m~ela~iL~~at~---~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~ 943 (1085)
++.++|... .+....++++.+ ...+|++| +.+ +.|+|||||++|+|+.+...+ +.++..|.+. |.++|+
T Consensus 846 ~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL--~~~p~~p~lLILDEPTsGLD~~~~~~l-~~lL~~L~~~-G~TVIv 921 (993)
T 2ygr_A 846 TLVDVGLGYVRLGQPAPTLSGGEAQRVKLASEL--QKRSTGRTVYILDEPTTGLHFDDIRKL-LNVINGLVDK-GNTVIV 921 (993)
T ss_dssp HHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHH--SSCCCSSEEEEEESTTTTCCHHHHHHH-HHHHHHHHHT-TCEEEE
T ss_pred HHHHcCCCcccccCccccCCHHHHHHHHHHHHH--HhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEE
Confidence 344555544 233334444444 44466666 644 699999999999998876554 4566677665 899999
Q ss_pred EEechhHHHhhcCc
Q 040956 944 ATHYHPLTKEFASH 957 (1085)
Q Consensus 944 aTH~~el~~~~~~~ 957 (1085)
+||+++++. .+++
T Consensus 922 isHdl~~i~-~aDr 934 (993)
T 2ygr_A 922 IEHNLDVIK-TSDW 934 (993)
T ss_dssp ECCCHHHHT-TCSE
T ss_pred EcCCHHHHH-hCCE
Confidence 999999874 4554
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.14 E-value=1.6e-10 Score=133.83 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=65.4
Q ss_pred chhhHHhHHHHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccceeec
Q 040956 886 STFLVECTETASVLQKATQD--SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHVTLQ 963 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~at~~--sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V~~~ 963 (1085)
|........+|.+| +.++ .++|||||++|+|+.....+.. ++..+. + ++++|++||+.+++. .+++..+...
T Consensus 297 SgGe~qrl~lA~~l--~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~-~~~vi~itH~~~~~~-~~d~i~~l~k 370 (415)
T 4aby_A 297 SGGELSRVMLAVST--VLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-D-TRQVLVVTHLAQIAA-RAHHHYKVEK 370 (415)
T ss_dssp CHHHHHHHHHHHHH--HHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-T-TSEEEEECSCHHHHT-TCSEEEEEEE
T ss_pred CHhHHHHHHHHHHH--HhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-C-CCEEEEEeCcHHHHh-hcCeEEEEEE
Confidence 44444444566655 6777 9999999999999777554443 444443 3 789999999998875 4554322210
Q ss_pred eeEEEEecCCCCcCCCCCcEEEeEeeccCCCCCchHHHHHHHc-C-CCHHHHHHHHHH
Q 040956 964 HMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGLQVAVMA-G-VPQKVVEAASHA 1019 (1085)
Q Consensus 964 ~m~~~~~~~~~~~~~~~~~i~flYkl~~G~~~~S~gi~vA~la-G-lP~~vi~rA~~~ 1019 (1085)
+ . .++++.-..+... ...---++|+|. | +.++.++.|+++
T Consensus 371 ~----~---------~~G~~~~~~~~l~---~~~~~~ei~~~~~g~~~~~~~~~a~~~ 412 (415)
T 4aby_A 371 Q----V---------EDGRTVSHVRLLT---GDERLEEIARMLSGNTSEAALEHAREL 412 (415)
T ss_dssp E----E---------ETTEEEEEEEECC---SHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred e----c---------cCCceEEEEEECC---chhhHHHHHHHhcCCCCHHHHHHHHHH
Confidence 0 0 1344433222111 111234577776 4 567777777664
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.14 E-value=1.7e-11 Score=126.83 Aligned_cols=126 Identities=19% Similarity=0.130 Sum_probs=70.2
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc------cccchH-------HHHHHHcCCc--cccccccchhhHH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM------CVLSLA-------DTIFTRLGAT--DRIMTGESTFLVE 891 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~------a~i~~~-------d~I~trig~~--D~i~~~~Stf~~E 891 (1085)
.++|+||||+|||||||.+++..-..-.| +.+... ..+++. +.++.+++.. +........++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g-~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIG-FWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEE-EEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCC-EEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 58999999999999999998865221122 111100 000000 0011111110 0111222334444
Q ss_pred h---HHHHHH-----HHhCCCCcEEEEeC--CCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEe---chhHHHhhcCcc
Q 040956 892 C---TETASV-----LQKATQDSLVILDE--LGRGTSTFDGYAIAYAVFRQLVERINCRLLFATH---YHPLTKEFASHP 958 (1085)
Q Consensus 892 m---~ela~i-----L~~at~~sLvLLDE--pgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH---~~el~~~~~~~~ 958 (1085)
+ ..++++ + +.+|+++|||| |+.|.|+.. ...+.+.+ +..+.++|++|| ++.++..+++++
T Consensus 81 ~~qr~~la~aa~~~~l--~~~p~llilDEigp~~~ld~~~----~~~l~~~l-~~~~~~~i~~~H~~h~~~~~~~i~~r~ 153 (178)
T 1ye8_A 81 EELAIPILERAYREAK--KDRRKVIIIDEIGKMELFSKKF----RDLVRQIM-HDPNVNVVATIPIRDVHPLVKEIRRLP 153 (178)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCEEEECCCSTTGGGCHHH----HHHHHHHH-TCTTSEEEEECCSSCCSHHHHHHHTCT
T ss_pred HHHHHHHHhhcccccc--ccCCCEEEEeCCCCcccCCHHH----HHHHHHHH-hcCCCeEEEEEccCCCchHHHHHHhcC
Confidence 4 345553 4 78999999999 977777443 23333333 344677888885 778888888875
Q ss_pred ce
Q 040956 959 HV 960 (1085)
Q Consensus 959 ~V 960 (1085)
..
T Consensus 154 ~~ 155 (178)
T 1ye8_A 154 GA 155 (178)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.13 E-value=1.2e-10 Score=153.44 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=101.4
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH--------------------
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV-------------------- 849 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~-------------------- 849 (1085)
.|+++|+...|-. ..+..|++|++|+++ +|+.++|+||+|||||||++.+..+.
T Consensus 1076 ~I~f~nVsf~Y~~--~~~~~VL~~isl~I~----~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE--RPEIEILKGLSFSVE----PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CEEEEEEEECCTT--SCSSCSEEEEEEEEC----TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHH
T ss_pred eEEEEEEEEeCCC--CCCCccccceeEEEC----CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHH
Confidence 5999999988832 123579999999998 89999999999999999999985432
Q ss_pred -HHhhccccccccccc--cchHHHH-----------------HHHcCCcccc-----------cc---ccchhhHHhHHH
Q 040956 850 -ILAQLGCFVPCEMCV--LSLADTI-----------------FTRLGATDRI-----------MT---GESTFLVECTET 895 (1085)
Q Consensus 850 -ilaqiG~~VPa~~a~--i~~~d~I-----------------~trig~~D~i-----------~~---~~Stf~~Em~el 895 (1085)
+..++| +||++..- -++.++| ....++.|.+ .. .+|.......-+
T Consensus 1150 ~lR~~i~-~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriai 1228 (1321)
T 4f4c_A 1150 HTRSQIA-IVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAI 1228 (1321)
T ss_dssp HHHTTEE-EECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHH
T ss_pred HHHhheE-EECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHH
Confidence 446677 89987531 1222222 2222332221 11 133333334457
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
|++| ..+++++||||||++.|+..... ....++.+. .++|+|++||-+.-+..
T Consensus 1229 ARAl--lr~~~ILiLDEaTSaLD~~tE~~-Iq~~l~~~~--~~~TvI~IAHRLsTi~~ 1281 (1321)
T 4f4c_A 1229 ARAL--VRNPKILLLDEATSALDTESEKV-VQEALDRAR--EGRTCIVIAHRLNTVMN 1281 (1321)
T ss_dssp HHHH--HSCCSEEEEESCCCSTTSHHHHH-HHHHHTTTS--SSSEEEEECSSSSTTTT
T ss_pred HHHH--HhCCCEEEEeCccccCCHHHHHH-HHHHHHHHc--CCCEEEEeccCHHHHHh
Confidence 7777 89999999999988877655332 222333221 38999999999876553
No 72
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.11 E-value=1.4e-10 Score=124.01 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=66.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHH-Hh-hccccccccccccchHHHHHHHcCCc-------------ccccc-----
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVI-LA-QLGCFVPCEMCVLSLADTIFTRLGAT-------------DRIMT----- 883 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~i-la-qiG~~VPa~~a~i~~~d~I~trig~~-------------D~i~~----- 883 (1085)
+|++++|+||||||||||+++++...+ .. .-+.++..+..... ......++|.. +....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARD-LRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-HHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHH-HHHHHHHcCCChHHHhhcCCEEEEEccccccccc
Confidence 689999999999999999999985433 22 22223322211111 11111222211 00000
Q ss_pred ------ccchh-hHHhH-HHHHHHHhCCCCcEEEEeCCCCCCC----hHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 884 ------GESTF-LVECT-ETASVLQKATQDSLVILDELGRGTS----TFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 884 ------~~Stf-~~Em~-ela~iL~~at~~sLvLLDEpgrGTs----~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
..+.. ..++. .+...+ .+.++.+++||||+.+.+ +.........++..+.+. |+|+|++||+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 108 SEEKFVLEDRFNVDNFLRYIYRVV-KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEAPDPQ 185 (251)
T ss_dssp ----------CCHHHHHHHHHHHH-HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECCC---
T ss_pred cccceeccCcccHHHHHHHHHHHH-HhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCCCCC
Confidence 00000 11111 122222 247899999999976653 233344466677777655 99999999998887
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.11 E-value=1.1e-11 Score=130.54 Aligned_cols=58 Identities=10% Similarity=-0.180 Sum_probs=40.4
Q ss_pred CCCcEEEEeCCCCCCChH-H--HHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCccce
Q 040956 903 TQDSLVILDELGRGTSTF-D--GYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHPHV 960 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~-D--g~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~~V 960 (1085)
.+|++++||||++|.+.. | .....+.++..+....+.++|++|||++.+..++++..+
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 467788899998886422 1 222244555666554588999999999999888876544
No 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.06 E-value=4.4e-10 Score=141.75 Aligned_cols=70 Identities=30% Similarity=0.275 Sum_probs=49.7
Q ss_pred cchhhHHhHHHHHHHHh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 885 ESTFLVECTETASVLQK-ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 885 ~Stf~~Em~ela~iL~~-at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|..+.....+|++|.. .+++.|+|||||++|+|+.+...+ ..++..|.++ |.|+|++||+++++.. +++
T Consensus 806 LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L-~~lL~~L~~~-G~TVIvI~HdL~~i~~-ADr 876 (916)
T 3pih_A 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKL-VEVLHRLVDR-GNTVIVIEHNLDVIKN-ADH 876 (916)
T ss_dssp CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHH-HHHHHHHHHT-TCEEEEECCCHHHHTT-CSE
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHHh-CCE
Confidence 34433334447777721 134689999999999998886554 4567777765 8999999999998764 554
No 75
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.03 E-value=6.8e-10 Score=127.35 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=47.7
Q ss_pred cchhhHHhHHHHHHHHh----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 885 ESTFLVECTETASVLQK----ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 885 ~Stf~~Em~ela~iL~~----at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|..+.....+|++|.. ..+|+++|||||+.|+|+.....+ ..++..+.+. |.++|++||+.++.. .+++
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~-~~~l~~l~~~-g~tvi~itH~~~~~~-~~d~ 353 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKI-ASVLKELERL-NKVIVFITHDREFSE-AFDR 353 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHH-HHHHHGGGGS-SSEEEEEESCHHHHT-TCSC
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHhC-CCEEEEEecchHHHH-hCCE
Confidence 33333334445555521 168999999999999998875544 4456666544 899999999998843 4444
No 76
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.99 E-value=1.4e-09 Score=120.35 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=75.8
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc--c-cccccccccchHHHHHHHc-CCc-----
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG--C-FVPCEMCVLSLADTIFTRL-GAT----- 878 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG--~-~VPa~~a~i~~~d~I~tri-g~~----- 878 (1085)
..+++++++++. +|++++|+||||+|||||++++++..... -| . |+..+.....+..++.... +..
T Consensus 22 ~~~Ld~i~~~l~----~G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~ 96 (296)
T 1cr0_A 22 CTGINDKTLGAR----GGEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD 96 (296)
T ss_dssp CTTHHHHHCSBC----TTCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCH
T ss_pred HHHHHHHhcCCC----CCeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhcc
Confidence 357888998887 78999999999999999999998865443 23 1 2222110000111111100 000
Q ss_pred ----------------------cc--cccc-cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCCh---HHH---HHHHH
Q 040956 879 ----------------------DR--IMTG-ESTFLVECTETASVLQKATQDSLVILDELGRGTST---FDG---YAIAY 927 (1085)
Q Consensus 879 ----------------------D~--i~~~-~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~---~Dg---~aia~ 927 (1085)
.. +... ...-..++.+.+..+..+.++.+||||||+...+. .|. .....
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~ 176 (296)
T 1cr0_A 97 SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM 176 (296)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH
Confidence 00 0100 11122344444445445789999999999884322 222 22234
Q ss_pred HHHHHHHHhcCceEEEEEech
Q 040956 928 AVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 928 avle~L~~~~~~tiL~aTH~~ 948 (1085)
..|..++++.++++|++||+.
T Consensus 177 ~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 177 TKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHhCCeEEEEEecC
Confidence 455666666699999999995
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.99 E-value=5.6e-11 Score=140.24 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=83.0
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHh--------------hccccccccccc------cchHHHHH
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILA--------------QLGCFVPCEMCV------LSLADTIF 872 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ila--------------qiG~~VPa~~a~------i~~~d~I~ 872 (1085)
+++|.+. +|++++|+||||||||||||+++++.... ++| +||+.... +++.+.+|
T Consensus 130 ~vsl~i~----~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~-~vpq~~~l~~~~~~~tv~eni~ 204 (460)
T 2npi_A 130 KIRMSNF----EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIF-TVPGCISATPISDILDAQLPTW 204 (460)
T ss_dssp HHHHHSS----SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSS-SCSSCCEEEECCSCCCTTCTTC
T ss_pred cCceEeC----CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCee-eeccchhhcccccccchhhhhc
Confidence 6888876 78999999999999999999998864321 123 56665421 12222221
Q ss_pred ------------------HHcCCcccc-ccccchhhHHhHHHHHHHHhCCCCcE----EEEeC-CCCCCChHHHHHHHHH
Q 040956 873 ------------------TRLGATDRI-MTGESTFLVECTETASVLQKATQDSL----VILDE-LGRGTSTFDGYAIAYA 928 (1085)
Q Consensus 873 ------------------trig~~D~i-~~~~Stf~~Em~ela~iL~~at~~sL----vLLDE-pgrGTs~~Dg~aia~a 928 (1085)
..+|..+.. ...+|..+.....++++.+.+.+|.+ +|||| |+.|.|+. ..
T Consensus 205 ~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~------~~ 278 (460)
T 2npi_A 205 GQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN------LA 278 (460)
T ss_dssp SCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS------CH
T ss_pred ccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh------HH
Confidence 111111111 11222223333335555113889999 99999 98888866 23
Q ss_pred HHHHHHHhcCceEEEEEechh------HHHhhcCc
Q 040956 929 VFRQLVERINCRLLFATHYHP------LTKEFASH 957 (1085)
Q Consensus 929 vle~L~~~~~~tiL~aTH~~e------l~~~~~~~ 957 (1085)
.+.++.+..+.++|++||+++ ++..++++
T Consensus 279 ~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 279 ELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEccCchhhhHHHHHHhccc
Confidence 444455555889999999988 65666654
No 78
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.91 E-value=4.2e-09 Score=110.90 Aligned_cols=143 Identities=10% Similarity=0.008 Sum_probs=75.6
Q ss_pred cccccccc-CCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc-ccccccccccchHHHHHHHcCCcc-ccc---
Q 040956 809 PVPNDILL-GEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLG-CFVPCEMCVLSLADTIFTRLGATD-RIM--- 882 (1085)
Q Consensus 809 ~V~ndisL-~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG-~~VPa~~a~i~~~d~I~trig~~D-~i~--- 882 (1085)
..++++.. ++. +|++++|+||||+|||||+++++......... .|+..+...-.+.. .+..++..- ...
T Consensus 10 ~~Ld~~~~ggi~----~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (235)
T 2w0m_A 10 LDFDKLIQGGIP----QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIR-QAKQFNWDFEEYIEKK 84 (235)
T ss_dssp HHHHGGGTTSEE----TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHH-HHHHTTCCCGGGBTTT
T ss_pred hHHHHHhcCCCc----CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHH-HHHHhcchHHHHhhCC
Confidence 44566665 444 68899999999999999999998755432211 12222221111111 122333211 000
Q ss_pred ----ccc----------ch-hhHHhHHHHHHHHhCCCCc--EEEEeCCCCCC--ChHHHHHHHHHHHHHHHHhcCceEEE
Q 040956 883 ----TGE----------ST-FLVECTETASVLQKATQDS--LVILDELGRGT--STFDGYAIAYAVFRQLVERINCRLLF 943 (1085)
Q Consensus 883 ----~~~----------St-f~~Em~ela~iL~~at~~s--LvLLDEpgrGT--s~~Dg~aia~avle~L~~~~~~tiL~ 943 (1085)
... .. -..++.+....+....++. +||||||+.+. ++.....+. ..+..+.++.++++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~ 163 (235)
T 2w0m_A 85 LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYA 163 (235)
T ss_dssp EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEE
T ss_pred EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEE
Confidence 000 00 0112222222121234788 99999998665 654444433 3455555556899999
Q ss_pred EEech--------hHHHhhcCc
Q 040956 944 ATHYH--------PLTKEFASH 957 (1085)
Q Consensus 944 aTH~~--------el~~~~~~~ 957 (1085)
+||+. ..+..+++.
T Consensus 164 ~~h~~~~~~~~~~~~~~~~~d~ 185 (235)
T 2w0m_A 164 TSQYAITTSQAFGFGVEHVADG 185 (235)
T ss_dssp EEC-----------CHHHHCSE
T ss_pred EeccCcccccccccchheeeeE
Confidence 99998 335556654
No 79
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.91 E-value=3.5e-09 Score=116.45 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=70.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh----------h-ccccccccccccchHHHH---------------HHHcCC
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA----------Q-LGCFVPCEMCVLSLADTI---------------FTRLGA 877 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila----------q-iG~~VPa~~a~i~~~d~I---------------~trig~ 877 (1085)
+|++++|+||||+|||||++++++.+... + -..|+..+.....+..++ ...++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~l 108 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLI 108 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceEE
Confidence 57899999999999999999998743321 1 112444443221111111 122221
Q ss_pred ccccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCC--CCChHHH--HHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 878 TDRIMTGESTFLVECTETASVLQKATQDSLVILDELGR--GTSTFDG--YAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 878 ~D~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgr--GTs~~Dg--~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
.+........+..++.+....+ +.++++||||||+. +.+..+. .......|..++++.|+++|++||+.....
T Consensus 109 ~~~~~~~~~~ls~g~~~~i~~l--~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 109 QPLIGSLPNIMAPEWFDGLKRA--AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp CCCTTSCCCTTSHHHHHHHHHH--HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred eecCCCCcccCCHHHHHHHHHh--cCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 1111112223333333333333 56899999999998 7665322 223344566666556999999999987653
No 80
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.90 E-value=4e-09 Score=111.20 Aligned_cols=126 Identities=12% Similarity=0.060 Sum_probs=66.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh------hc-ccccccccc-ccchHHHHHHHcCCcc-----cccccc--chh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA------QL-GCFVPCEMC-VLSLADTIFTRLGATD-----RIMTGE--STF 888 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila------qi-G~~VPa~~a-~i~~~d~I~trig~~D-----~i~~~~--Stf 888 (1085)
+|++++|+||||||||||++++++..... .- -.|+..+.. ....+..++..++... ++.... +..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 68899999999999999999998854331 10 112322221 1112334555555432 221111 111
Q ss_pred -hHH-hHHHHHHHHh----CCCCcEEEEeCCCCCCChH-------H-----HHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 889 -LVE-CTETASVLQK----ATQDSLVILDELGRGTSTF-------D-----GYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 889 -~~E-m~ela~iL~~----at~~sLvLLDEpgrGTs~~-------D-----g~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
..+ +.++..++.. ..++.+|+||||+.+.++. . ...+.. .+..+.++.|+++|++||+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~-~l~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA-DLHRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHH-HHHHHHHHHTCEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHH-HHHHHHHHCCCeEEEEeecccC
Confidence 011 1122222221 4589999999996554431 0 012233 3334444559999999995544
No 81
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.78 E-value=3.1e-08 Score=111.50 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=46.5
Q ss_pred cchhhHHhHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 885 ESTFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 885 ~Stf~~Em~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+|..+..+..+|++|.. ..++.++|||||++|+|+.....+. .++..+ .. +.++|++||+.++.. .+++
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~-~~-~~~vi~~tH~~~~~~-~~d~ 290 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKEN-SK-HTQFIVITHNKIVME-AADL 290 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHH-TT-TSEEEEECCCTTGGG-GCSE
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHh-cC-CCeEEEEECCHHHHh-hCce
Confidence 44444445556776633 2578999999999999987755544 345554 23 789999999976543 4543
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=7.1e-09 Score=106.06 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=63.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc---cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC---FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~---~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~ 900 (1085)
+|+.++|+||||+|||||+++++..... .-|. |+.... +++.+...+. .+... .++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~---------~~~~ 96 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIRGYFFDTKD----LIFRLKHLMD------EGKDT---------KFLK 96 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCCCCEEEHHH----HHHHHHHHHH------HTCCS---------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCeEEEEEHHH----HHHHHHHHhc------CchHH---------HHHH
Confidence 4679999999999999999999885432 2231 221110 1111111110 00000 2223
Q ss_pred hCCCCcEEEEeCCCC-CCChHHHHHHHHHHHHHHHHhcCceEEEEEechh
Q 040956 901 KATQDSLVILDELGR-GTSTFDGYAIAYAVFRQLVERINCRLLFATHYHP 949 (1085)
Q Consensus 901 ~at~~sLvLLDEpgr-GTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~e 949 (1085)
...++++||||||+. |.++... .....+++...+. ++++|++||+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~-~~l~~ll~~~~~~-~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQR-ELISYIITYRYNN-LKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHH-HHHHHHHHHHHHT-TCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHH-HHHHHHHHHHHHc-CCCEEEEcCCCh
Confidence 344789999999985 7775543 4455667766554 889999999863
No 83
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.72 E-value=7.3e-08 Score=100.88 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=69.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccc-cccchHHHHHHHcCCc-----ccc-ccccchhhHHhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEM-CVLSLADTIFTRLGAT-----DRI-MTGESTFLVECTETA 896 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~-a~i~~~d~I~trig~~-----D~i-~~~~Stf~~Em~ela 896 (1085)
+|++++|+||||+|||||+++++. ....-..|+..+. .....+..+...++.. +++ ....+........++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIG 96 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHH
Confidence 688999999999999999999987 1111223444332 1111222333333321 111 112222221112233
Q ss_pred HHHHhCC-CCcEEEEeCCCCCCChHHH-----HHH--HHHHHHHHHHhcCceEEEEEechh
Q 040956 897 SVLQKAT-QDSLVILDELGRGTSTFDG-----YAI--AYAVFRQLVERINCRLLFATHYHP 949 (1085)
Q Consensus 897 ~iL~~at-~~sLvLLDEpgrGTs~~Dg-----~ai--a~avle~L~~~~~~tiL~aTH~~e 949 (1085)
.+...+. ++.+||+|||+.+.+.... ..+ ....+..++++.++++|+++|...
T Consensus 97 ~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 97 SLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 3222244 4999999999998775321 111 122355566666899999999865
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=9.3e-10 Score=127.93 Aligned_cols=136 Identities=15% Similarity=0.000 Sum_probs=89.3
Q ss_pred cccccccccCCCCCCCCCC--------------------EEEEEeCCCCCcchHHhhhhhHHHHh------------hcc
Q 040956 808 LPVPNDILLGEDSDDCLPR--------------------TLLLTGPNMGGKSTLLRATCLAVILA------------QLG 855 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~--------------------~~iItGpNgsGKSTLLR~i~~i~ila------------qiG 855 (1085)
..+.++++|.+. +|+ +++|+||||+|||||||+++++.-.. +.|
T Consensus 36 ~~~l~~is~~i~----~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~ 111 (413)
T 1tq4_A 36 QEILNLIELRMR----AGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER 111 (413)
T ss_dssp HHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC
T ss_pred HHHhhhccceec----CCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE
Confidence 468889999887 677 99999999999999999998743111 112
Q ss_pred cccccccc--cc------------chHHHHHHHcCCcc--ccccccchh--hHHhHHHHHHHHh--------CCCCcEEE
Q 040956 856 CFVPCEMC--VL------------SLADTIFTRLGATD--RIMTGESTF--LVECTETASVLQK--------ATQDSLVI 909 (1085)
Q Consensus 856 ~~VPa~~a--~i------------~~~d~I~trig~~D--~i~~~~Stf--~~Em~ela~iL~~--------at~~sLvL 909 (1085)
++++... .+ ..++.++.+++..+ .... .|.. +.....++++|.. .++++++|
T Consensus 112 -~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 112 -HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp -EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred -EeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 3333210 01 12456777777543 2222 5544 6666678888854 23889999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHH----Hhc----CceEEEEEechhH
Q 040956 910 LDELGRGTSTFDGYAIAYAVFRQLV----ERI----NCRLLFATHYHPL 950 (1085)
Q Consensus 910 LDEpgrGTs~~Dg~aia~avle~L~----~~~----~~tiL~aTH~~el 950 (1085)
+|||++|.|+.....+.. ++..+. .+. ..+++++||+.+.
T Consensus 190 LDEPtsgLD~~~~~~l~~-~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 190 TNEADGEPQTFDKEKVLQ-DIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp HHHHTTCCTTCCHHHHHH-HHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred cCcccccCCHHHHHHHHH-HHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 999999999887665443 444443 122 2467889998765
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.68 E-value=7.6e-08 Score=109.08 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=39.1
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+.+|.++|||||+.|.|+.....+. .++..+... +.++|++||+.++. ..+++
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~-~~~vi~~sH~~~~~-~~~d~ 322 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLI-TIMERYLKK-IPQVILVSHDEELK-DAADH 322 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGG-SSEEEEEESCGGGG-GGCSE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhc-CCEEEEEEChHHHH-HhCCE
Confidence 6789999999999999987755443 455555444 77999999997754 34443
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.66 E-value=3.4e-09 Score=119.97 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=68.7
Q ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcC-Cccc--cccccc
Q 040956 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLG-ATDR--IMTGES 886 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig-~~D~--i~~~~S 886 (1085)
+++++++.+. +|++++|+|||||||||||+.+++.. -..-|...-.....+. +. ..+. +..+
T Consensus 160 ~l~~l~~~i~----~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~~e~~--------~~~~~~~i~~~~g-- 224 (330)
T 2pt7_A 160 AISAIKDGIA----IGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDTEEIV--------FKHHKNYTQLFFG-- 224 (330)
T ss_dssp HHHHHHHHHH----HTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESSCCCC--------CSSCSSEEEEECB--
T ss_pred HHhhhhhhcc----CCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCeeccc--------cccchhEEEEEeC--
Confidence 6788888876 68899999999999999999998742 1222211111000000 00 0000 0000
Q ss_pred hhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 887 TFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 887 tf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
..+.....++++| ..+|+++|+|||+ +. + +..+++.+... +.++|++||.....
T Consensus 225 gg~~~r~~la~aL--~~~p~ilildE~~---~~-e----~~~~l~~~~~g-~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 225 GNITSADCLKSCL--RMRPDRIILGELR---SS-E----AYDFYNVLCSG-HKGTLTTLHAGSSE 278 (330)
T ss_dssp TTBCHHHHHHHHT--TSCCSEEEECCCC---ST-H----HHHHHHHHHTT-CCCEEEEEECSSHH
T ss_pred CChhHHHHHHHHh--hhCCCEEEEcCCC---hH-H----HHHHHHHHhcC-CCEEEEEEcccHHH
Confidence 1111223456666 7899999999994 41 1 34456665432 44799999998843
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.65 E-value=6.6e-08 Score=115.98 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=77.9
Q ss_pred CCccccccccc-CCCCCCCCCCEEEEEeCCCCCcchHHhhh--hhHHHHhhccccccccccccchHHHHHHHcCCc----
Q 040956 806 GGLPVPNDILL-GEDSDDCLPRTLLLTGPNMGGKSTLLRAT--CLAVILAQLGCFVPCEMCVLSLADTIFTRLGAT---- 878 (1085)
Q Consensus 806 ~~~~V~ndisL-~~~~~~~~g~~~iItGpNgsGKSTLLR~i--~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~---- 878 (1085)
++..+++++++ ++. +|++++|+||||||||||++++ +++.-...-..++-.+...... .....++|..
T Consensus 23 ~g~~~Ld~i~~G~i~----~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~-~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 23 TMIEGFDDISHGGLP----IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDI-IKNARSFGWDLAKL 97 (525)
T ss_dssp CCCTTHHHHTTSSEE----TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH-HHHHGGGTCCHHHH
T ss_pred CCchhHHHhcCCCCC----CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHH-HHHHHHcCCChHHh
Confidence 35678999999 777 7899999999999999999995 4432212222233222211000 0111112110
Q ss_pred ---cccc-----------cccchhhHH--hHHHHHHHHhCCCCcEEEEeCCCCCCCh----HHHHHHHHHHHHHHHHhcC
Q 040956 879 ---DRIM-----------TGESTFLVE--CTETASVLQKATQDSLVILDELGRGTST----FDGYAIAYAVFRQLVERIN 938 (1085)
Q Consensus 879 ---D~i~-----------~~~Stf~~E--m~ela~iL~~at~~sLvLLDEpgrGTs~----~Dg~aia~avle~L~~~~~ 938 (1085)
+++. .-...+..+ +.+....|. ..++.+|+||||+..... .........++..+.+. |
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g 175 (525)
T 1tf7_A 98 VDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-G 175 (525)
T ss_dssp HHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-T
T ss_pred hccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHH-HcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-C
Confidence 0000 001111111 112222221 257899999999764321 12334456778887764 9
Q ss_pred ceEEEEEechhHH
Q 040956 939 CRLLFATHYHPLT 951 (1085)
Q Consensus 939 ~tiL~aTH~~el~ 951 (1085)
+|+|++||+.+.+
T Consensus 176 ~tvl~itH~~~~~ 188 (525)
T 1tf7_A 176 ATTVMTTERIEEY 188 (525)
T ss_dssp CEEEEEEECSSSS
T ss_pred CEEEEEecCCCCc
Confidence 9999999999874
No 88
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.64 E-value=1.2e-08 Score=111.80 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=68.3
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHH-cC-Ccc-cccccc
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTR-LG-ATD-RIMTGE 885 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~tr-ig-~~D-~i~~~~ 885 (1085)
.++++++ .. +|++++|+|||||||||||+++++..-...-|..+-.+. .+.++ +.. .+ ..+ .+....
T Consensus 15 ~vl~~i~--i~----~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~---~~~~~~~v~q~~~gl~~ 84 (261)
T 2eyu_A 15 DKVLELC--HR----KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYV---FKHKKSIVNQREVGEDT 84 (261)
T ss_dssp THHHHGG--GC----SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSC---CCCSSSEEEEEEBTTTB
T ss_pred HHHHHHh--hC----CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceee---cCCcceeeeHHHhCCCH
Confidence 4677887 33 578999999999999999999988643221332211110 00000 000 00 000 000011
Q ss_pred chhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 886 STFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
.+| ...++++| +.+|+++|+||| ||... +..+++. .. .|.++|++||+.+..
T Consensus 85 ~~l---~~~la~aL--~~~p~illlDEp---~D~~~----~~~~l~~-~~-~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 85 KSF---ADALRAAL--REDPDVIFVGEM---RDLET----VETALRA-AE-TGHLVFGTLHTNTAI 136 (261)
T ss_dssp SCH---HHHHHHHH--HHCCSEEEESCC---CSHHH----HHHHHHH-HH-TTCEEEEEECCSSHH
T ss_pred HHH---HHHHHHHH--hhCCCEEEeCCC---CCHHH----HHHHHHH-Hc-cCCEEEEEeCcchHH
Confidence 233 24567777 458999999999 45433 2334443 33 488999999998754
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.61 E-value=8.7e-08 Score=95.99 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=57.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc---ccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLG---CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG---~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~ 900 (1085)
+|+.++|+||||+|||||++.++..... -| .|+++...... .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~~~~~---------------------------------~ 79 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAASMPLT---------------------------------D 79 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTTSCCC---------------------------------G
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHHhhHH---------------------------------H
Confidence 3679999999999999999999885442 23 23333211100 0
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCce-EEEEEec
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR-LLFATHY 947 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~t-iL~aTH~ 947 (1085)
...++++||||||+..... + ......+++.+.++ |.+ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~~~~~-~-~~~l~~li~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEKLGNE-E-QALLFSIFNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTCCCSH-H-HHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred HHhCCCEEEEeCccccChH-H-HHHHHHHHHHHHHc-CCcEEEEECCC
Confidence 1346899999999875443 3 44466677777665 677 8888885
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.61 E-value=2.1e-08 Score=112.21 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=69.8
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH---------------------------hhcccccccccc-c
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------------------------AQLGCFVPCEMC-V 864 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------------------------aqiG~~VPa~~a-~ 864 (1085)
+++|... +|++++|+||||+||||+++.+++..-. .+++ ++++... .
T Consensus 92 ~l~~~~~----~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~ 166 (302)
T 3b9q_A 92 ELQLGFR----KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKA 166 (302)
T ss_dssp SCCCCSS----SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCC--CC
T ss_pred ccccccC----CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCce-EEEecCCcc
Confidence 3555554 6889999999999999999999775411 0233 4554432 2
Q ss_pred c---chHHHHHH-H-cCCccccc--ccc----chhhHHhHHHHHHHHh--CCCCc--EEEEeCCCCCCChHHHHHHHHHH
Q 040956 865 L---SLADTIFT-R-LGATDRIM--TGE----STFLVECTETASVLQK--ATQDS--LVILDELGRGTSTFDGYAIAYAV 929 (1085)
Q Consensus 865 i---~~~d~I~t-r-ig~~D~i~--~~~----Stf~~Em~ela~iL~~--at~~s--LvLLDEpgrGTs~~Dg~aia~av 929 (1085)
. ...+.+.. . -+....+. .|. ...+.|+.+....+.. +.+|. +++|| |+.|.|+...
T Consensus 167 ~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------- 238 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------- 238 (302)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-------
T ss_pred CHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-------
Confidence 1 23344421 1 11111111 111 2233444432222221 57899 99999 9888775532
Q ss_pred HHHHHHhcCceEEEEEech
Q 040956 930 FRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 930 le~L~~~~~~tiL~aTH~~ 948 (1085)
+..+.+..+.++|++||.-
T Consensus 239 ~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 239 AREFNEVVGITGLILTKLD 257 (302)
T ss_dssp HHHHHHHTCCCEEEEECCS
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 2445555589999999943
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.58 E-value=7.7e-08 Score=115.40 Aligned_cols=126 Identities=12% Similarity=0.017 Sum_probs=76.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc----cccccccccchHHHHHHHcCCc----------cccccccchhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC----FVPCEMCVLSLADTIFTRLGAT----------DRIMTGESTFL 889 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~----~VPa~~a~i~~~d~I~trig~~----------D~i~~~~Stf~ 889 (1085)
+|++++|+||||+|||||++++++.... + |. +++.+.. ..+..++ .++|.. +-.......++
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~-G~~vi~~~~ee~~-~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA-N-KERAILFAYEESR-AQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT-T-TCCEEEEESSSCH-HHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh-C-CCCEEEEEEeCCH-HHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 6899999999999999999999886433 2 32 3343321 1122111 122321 11111122233
Q ss_pred HH-hHH--HHHHHHhCCCCcEEEEeCCCCCCChH----HHHHHHHHHHHHHHHhcCceEEEEEech----------hHHH
Q 040956 890 VE-CTE--TASVLQKATQDSLVILDELGRGTSTF----DGYAIAYAVFRQLVERINCRLLFATHYH----------PLTK 952 (1085)
Q Consensus 890 ~E-m~e--la~iL~~at~~sLvLLDEpgrGTs~~----Dg~aia~avle~L~~~~~~tiL~aTH~~----------el~~ 952 (1085)
.+ .++ +++++ +.+|++|||| |++|.+.. +.......++..+.+. |+++|++||+. ..+.
T Consensus 356 ~g~~q~~~~a~~l--~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilvsh~~~~~~~~~~~~~~l~ 431 (525)
T 1tf7_A 356 LEDHLQIIKSEIN--DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFTNTSDQFMGAHSITDSHIS 431 (525)
T ss_dssp HHHHHHHHHHHHH--TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSSSCCCSSCSSCCT
T ss_pred HHHHHHHHHHHHH--hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEEECcccccCcccccCcccc
Confidence 33 333 44444 7899999999 98877754 0234455677777654 89999999998 5555
Q ss_pred hhcCc
Q 040956 953 EFASH 957 (1085)
Q Consensus 953 ~~~~~ 957 (1085)
.++++
T Consensus 432 ~~~D~ 436 (525)
T 1tf7_A 432 TITDT 436 (525)
T ss_dssp TTCSE
T ss_pred eeeeE
Confidence 55554
No 92
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.58 E-value=1.1e-07 Score=102.40 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=24.1
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++..++++++|.+. +|.+++|+|||||||||++|.+++.
T Consensus 10 ~~~~~l~~isl~i~----~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSM----RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------C----CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCC----CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999987 7889999999999999999999774
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.57 E-value=4.1e-08 Score=112.20 Aligned_cols=120 Identities=20% Similarity=0.257 Sum_probs=69.7
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHH---------------------------hhcccccccccc-c
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVIL---------------------------AQLGCFVPCEMC-V 864 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~il---------------------------aqiG~~VPa~~a-~ 864 (1085)
+++|... +|++++|+||||+||||+++.+++..-. .+++ ++++... .
T Consensus 149 ~l~l~~~----~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~-~v~q~~~~~ 223 (359)
T 2og2_A 149 ELQLGFR----KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKA 223 (359)
T ss_dssp SCCCCSS----SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCSSSSC
T ss_pred CcceecC----CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeE-EEEeccccc
Confidence 3555554 6889999999999999999999775411 1133 4554432 1
Q ss_pred c---chHHHHHH-Hc-CCccccc--ccc----chhhHHhHH----HHHHHHhCCCCc--EEEEeCCCCCCChHHHHHHHH
Q 040956 865 L---SLADTIFT-RL-GATDRIM--TGE----STFLVECTE----TASVLQKATQDS--LVILDELGRGTSTFDGYAIAY 927 (1085)
Q Consensus 865 i---~~~d~I~t-ri-g~~D~i~--~~~----Stf~~Em~e----la~iL~~at~~s--LvLLDEpgrGTs~~Dg~aia~ 927 (1085)
. ...+.+.. .. +....+. .|. ...+.|+.. +++++ +.+|. |++|| |+.|.|+...
T Consensus 224 ~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral--~~~P~e~lLvLD-pttglD~~~~----- 295 (359)
T 2og2_A 224 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIV--SGAPNEILLVLD-GNTGLNMLPQ----- 295 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHS--TTCCSEEEEEEE-GGGGGGGHHH-----
T ss_pred ChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHH--hcCCCceEEEEc-CCCCCCHHHH-----
Confidence 1 23344321 11 1111111 111 223334332 33333 67899 99999 9887775532
Q ss_pred HHHHHHHHhcCceEEEEEec
Q 040956 928 AVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 928 avle~L~~~~~~tiL~aTH~ 947 (1085)
+..+.+..+.++|++||.
T Consensus 296 --~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 296 --AREFNEVVGITGLILTKL 313 (359)
T ss_dssp --HHHHHHHTCCCEEEEESC
T ss_pred --HHHHHHhcCCeEEEEecC
Confidence 234555568999999995
No 94
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.56 E-value=1.4e-07 Score=100.16 Aligned_cols=128 Identities=12% Similarity=0.093 Sum_probs=65.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh------cc-cccccccc-ccchHHHHHHHcCCc-----cccccccchhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ------LG-CFVPCEMC-VLSLADTIFTRLGAT-----DRIMTGESTFLV 890 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq------iG-~~VPa~~a-~i~~~d~I~trig~~-----D~i~~~~Stf~~ 890 (1085)
+|++++|+||||+|||||+++++....+.. .| .|+-.+.. ....+..+..++|.. +++.-....-..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 688999999999999999999988544421 12 23333221 111223345556643 222111100011
Q ss_pred HhH----HHHHHHHhCCCCcEEEEeCCCCCCChH-H-----H-----HHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 891 ECT----ETASVLQKATQDSLVILDELGRGTSTF-D-----G-----YAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 891 Em~----ela~iL~~at~~sLvLLDEpgrGTs~~-D-----g-----~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
+.. ++...+. ..++.+|+||||+.+.+.. + + ..-....+..++++.++++|+++|......
T Consensus 103 ~~~~~~~~~~~~~~-~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 103 HQTQLLYQASAMMV-ESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp HHHHHHHHHHHHHH-HSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred HHHHHHHHHHHHHh-cCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 211 1222221 2579999999998877653 1 1 111222233444556999999999876543
No 95
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.52 E-value=5.5e-08 Score=111.14 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=62.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccc-ccccchHHHHHHHcC-Ccc-ccccccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE-MCVLSLADTIFTRLG-ATD-RIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~-~a~i~~~d~I~trig-~~D-~i~~~~Stf~~Em~ela~iL~ 900 (1085)
++.+++|+|||||||||||+++++..-...-|..+-.+ ...+..-. ..+ ..+ ......-+|.. .++++|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~----~~~~v~q~~~~~~~~~~~~---~La~aL- 193 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES----KKCLVNQREVHRDTLGFSE---ALRSAL- 193 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC----SSSEEEEEEBTTTBSCHHH---HHHHHT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc----cccceeeeeeccccCCHHH---HHHHHh-
Confidence 45699999999999999999997754322223221111 00000000 000 000 00001112221 467777
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
..+|+++|+||| |+... +..++ .+... |.++|++||+.+.+..
T Consensus 194 -~~~PdvillDEp---~d~e~----~~~~~-~~~~~-G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 194 -REDPDIILVGEM---RDLET----IRLAL-TAAET-GHLVFGTLHTTSAAKT 236 (356)
T ss_dssp -TSCCSEEEESCC---CSHHH----HHHHH-HHHHT-TCEEEEEESCSSHHHH
T ss_pred -hhCcCEEecCCC---CCHHH----HHHHH-HHHhc-CCEEEEEEccChHHHH
Confidence 789999999999 55222 22233 33443 8999999999887643
No 96
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.44 E-value=4.3e-07 Score=103.46 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH-hhc----c--ccccccccc-cchHHHHHHHcCCc-----ccccccc---ch
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL-AQL----G--CFVPCEMCV-LSLADTIFTRLGAT-----DRIMTGE---ST 887 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il-aqi----G--~~VPa~~a~-i~~~d~I~trig~~-----D~i~~~~---St 887 (1085)
+|+++.|+||||+|||||++++++.... ... | .|+-.+... ...+-.++.+.+.. +++.-.. +.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 6899999999999999999999876422 112 2 344443321 11122244444432 2222111 11
Q ss_pred hhHHhHHHHH-HHHhC----CCCcEEEEeCCCCCCChHH--------H---HHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 888 FLVECTETAS-VLQKA----TQDSLVILDELGRGTSTFD--------G---YAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 888 f~~Em~ela~-iL~~a----t~~sLvLLDEpgrGTs~~D--------g---~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
-..++.+.+. .+... .+++|||+|||+.+.++.. . ..-....|..++++.++++|+++|.....
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 1112222222 23222 6899999999977765431 0 11122334455555689999999987644
Q ss_pred H
Q 040956 952 K 952 (1085)
Q Consensus 952 ~ 952 (1085)
.
T Consensus 290 ~ 290 (349)
T 1pzn_A 290 D 290 (349)
T ss_dssp -
T ss_pred c
Confidence 3
No 97
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.43 E-value=1.5e-08 Score=105.69 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVI 850 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~i 850 (1085)
|++++|+||||+|||||++.+++..-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46899999999999999999998654
No 98
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.41 E-value=1.3e-08 Score=108.07 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=24.1
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.-++|++|.+. +|++++|+||||||||||+|++++..
T Consensus 11 ~~l~~isl~i~----~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMN----NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecC----CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999987 78999999999999999999998854
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.28 E-value=6.3e-09 Score=109.00 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccc
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~ 861 (1085)
+|.+++|+||||||||||+|.+++..- .+++ +++++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~-~~i~-~v~~d 40 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG-ERVA-LLPMD 40 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG-GGEE-EEEGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC-CCeE-EEecC
Confidence 578999999999999999999988532 1244 55554
No 100
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.28 E-value=1.4e-06 Score=97.85 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH----hhcccccccccc
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL----AQLGCFVPCEMC 863 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il----aqiG~~VPa~~a 863 (1085)
+|.+++|+||||||||||+|+|+++.-. .++| +|+++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~-~v~qd~~ 131 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVD-LVTTDGF 131 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEE-EEEGGGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEE-EEecCcc
Confidence 6789999999999999999999886432 1244 6666543
No 101
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.22 E-value=1.1e-06 Score=96.54 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=28.7
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 906 SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 906 sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
.|++||||+.|+++.| ..++..|.+. .++|++.|-.+.
T Consensus 115 ~lllldep~~gL~~lD-----~~~l~~L~~~--~~vI~Vi~K~D~ 152 (270)
T 3sop_A 115 CLYFISPTGHSLRPLD-----LEFMKHLSKV--VNIIPVIAKADT 152 (270)
T ss_dssp EEEEECCCSSSCCHHH-----HHHHHHHHTT--SEEEEEETTGGG
T ss_pred eeEEEecCCCcCCHHH-----HHHHHHHHhc--CcEEEEEecccc
Confidence 5999999999999988 3456666553 778888776543
No 102
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.18 E-value=1.8e-07 Score=106.56 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=42.9
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.++++++.++|- .+..+.+++ |.+. +|++++|+||||+||||||++|++.
T Consensus 44 ~~i~~~~l~~~~~----tg~~ald~l-l~i~----~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 44 DPLLRQVIDQPFI----LGVRAIDGL-LTCG----IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CSTTCCCCCSEEC----CSCHHHHHH-SCEE----TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeeecccceecC----CCCEEEEee-eeec----CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578888888882 145788999 9987 7999999999999999999999875
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.16 E-value=1.1e-07 Score=115.88 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCCcEEEEeCC------CCCCChHHHHHHHHHHHHHHH-HhcCceEEEEEechhHH
Q 040956 903 TQDSLVILDEL------GRGTSTFDGYAIAYAVFRQLV-ERINCRLLFATHYHPLT 951 (1085)
Q Consensus 903 t~~sLvLLDEp------grGTs~~Dg~aia~avle~L~-~~~~~tiL~aTH~~el~ 951 (1085)
..|.|+|+||| +.|.++.....+ ..++..++ +..+.+++++||+.+++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i-~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKI-KTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHH-HHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHH-HHHHHHHHhcCCCCceEEEeccchhc
Confidence 45889999999 777776554443 44555443 33356788899997643
No 104
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.15 E-value=3.2e-06 Score=97.18 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=60.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccc-ccccchHHHHHHHcC-Cccc-cccccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE-MCVLSLADTIFTRLG-ATDR-IMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~-~a~i~~~d~I~trig-~~D~-i~~~~Stf~~Em~ela~iL~ 900 (1085)
+|.+++|+|||||||||+|+.+++..-...-|..+-.+ ...... -..++ ..+. +.....+|. ..++..|
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~----~~~~~~v~Q~~~g~~~~~~~---~~l~~~L- 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA---DALRAAL- 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCSH---HHHHHHT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh----ccCceEEEeeecCCCHHHHH---HHHHHHh-
Confidence 57899999999999999999998854322133221111 000000 00000 0000 000122342 2355555
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
..+|+++|+||| ++... +..+++.. . .|.++|.++|..+..
T Consensus 207 -~~~pd~illdE~---~d~e~----~~~~l~~~-~-~g~~vi~t~H~~~~~ 247 (372)
T 2ewv_A 207 -REDPDVIFVGEM---RDLET----VETALRAA-E-TGHLVFGTLHTNTAI 247 (372)
T ss_dssp -TSCCSEEEESCC---CSHHH----HHHHHHHH-T-TTCEEEECCCCCSHH
T ss_pred -hhCcCEEEECCC---CCHHH----HHHHHHHH-h-cCCEEEEEECcchHH
Confidence 568999999999 45433 23344432 3 478899999987643
No 105
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.15 E-value=4.2e-06 Score=96.97 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=67.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-cc------ccccccc-cccchHHHHHHHcCCcc-----ccccccchhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-LG------CFVPCEM-CVLSLADTIFTRLGATD-----RIMTGESTFLV 890 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-iG------~~VPa~~-a~i~~~d~I~trig~~D-----~i~~~~Stf~~ 890 (1085)
+|++++|+||||+|||||+++++....+.. .| .|+-.+. .....+..+..++|... ++.-.......
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 688999999999999999998875544321 11 2333322 11112333556666431 22211111111
Q ss_pred H-h---HHHHHHHHhCCCCcEEEEeCCCCCCChH-HH-------H---HHHHHHHHHHHHhcCceEEEEEech
Q 040956 891 E-C---TETASVLQKATQDSLVILDELGRGTSTF-DG-------Y---AIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 891 E-m---~ela~iL~~at~~sLvLLDEpgrGTs~~-Dg-------~---aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
+ + .++...+. ..++.+|++|||+.-.+.. .| . .-....|..+.++.++++|++||..
T Consensus 257 ~~~~~l~~~~~~l~-~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 257 HQLRLLDAAAQMMS-ESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHH-HSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHH-hcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 1 1 11222222 3578999999996655431 11 1 1123345556666799999999984
No 106
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.15 E-value=2.6e-06 Score=90.79 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+|++++|+||||||||||+|.+++..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999998753
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.13 E-value=2.6e-06 Score=95.22 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=23.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+|++++|+|||||||||+++.+++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999998754
No 108
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.13 E-value=1.1e-05 Score=85.52 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=64.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-ccccccccccccchHHHHHHHcCCcc-------ccc--c------c---
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-LGCFVPCEMCVLSLADTIFTRLGATD-------RIM--T------G--- 884 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-iG~~VPa~~a~i~~~d~I~trig~~D-------~i~--~------~--- 884 (1085)
+|++++|+||||+|||||+.+++....... -..|+..+.....+..+ +.++|..- ++. . +
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQN-MAQFGWDVKPYEEKGMFAMVDAFTAGIGKSK 100 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHH-HHTTTCCCHHHHHHTSEEEEECSTTTTCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH-HHHcCCCHHHHhhCCcEEEEecchhhccccc
Confidence 688999999999999999887765443322 12233332221111111 12233210 000 0 0
Q ss_pred --------cchhhHH-hHHHHHHHHhCCCCcEEEEeCCCCCC--ChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 885 --------ESTFLVE-CTETASVLQKATQDSLVILDELGRGT--STFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 885 --------~Stf~~E-m~ela~iL~~at~~sLvLLDEpgrGT--s~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
...-..+ ...+..++. ..++.+|++|+++... +..........+...+ ++.++++|+++|....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~-~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 101 EYEKYIVHDLTDIREFIEVLRQAIR-DINAKRVVVDSVTTLYINKPAMARSIILQLKRVL-AGTGCTSIFVSQVSVG 175 (247)
T ss_dssp CCCSCBCSCCSSHHHHHHHHHHHHH-HHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH-HHTTCEEEEEEECC--
T ss_pred ccccccccCccCHHHHHHHHHHHHH-HhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH-HHCCCeEEEEecCCCC
Confidence 0000111 122333332 2468899999998765 3323344445555443 4458999999998764
No 109
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.06 E-value=6.3e-07 Score=105.12 Aligned_cols=51 Identities=22% Similarity=0.127 Sum_probs=42.4
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.++++++.++|- .+..+.+++ |.+. +|++++|+||||+||||||++|++.
T Consensus 130 ~~l~~~~v~~~~~----tg~~vld~v-l~i~----~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 130 NPLQRTPIEHVLD----TGVRAINAL-LTVG----RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CTTTSCCCCSBCC----CSCHHHHHH-SCCB----TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEeccceecC----CCceEEeee-EEec----CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3577788888872 145689999 9987 7999999999999999999999764
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.06 E-value=4.2e-07 Score=105.93 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=33.6
Q ss_pred CEEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 789 PVLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 789 ~~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
..|.+.++.+.| ++..+.++++|. ++|+||||+||||||+++++..
T Consensus 10 ~~l~~~~l~~~y-----~~~~vl~~vsf~----------I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 10 GYVGFANLPNQV-----YRKSVKRGFEFT----------LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp -----CCCCCCT-----TTTTCC-CCCEE----------EEEECCTTSSHHHHHHHHTTCC
T ss_pred CcEEEEecceeE-----CCEEEecCCCEE----------EEEECCCCCcHHHHHHHHhCCC
Confidence 357888887776 456789998884 5999999999999999998753
No 111
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.01 E-value=2.5e-06 Score=95.18 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=20.6
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++..+.++++|. ++|+||||+||||||+++.+.
T Consensus 9 ~~~~~l~~~~~~----------I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 9 HRKSVKKGFEFT----------LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ---------CEE----------EEEEEETTSSHHHHHHHHHC-
T ss_pred CCEEEEcCCCEE----------EEEECCCCCCHHHHHHHHhCC
Confidence 345678888774 699999999999999998664
No 112
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.01 E-value=3.1e-05 Score=88.23 Aligned_cols=123 Identities=15% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|++++|.||||+|||||+.+++...... .-..|+..+...-. ....++|.. +++.-....-..+..+++..+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~---~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP---EYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH---HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 68899999999999999999987654432 12235544432111 134556642 22211111112334455555533
Q ss_pred CCCCcEEEEeCCCCCCChH-------HH-----HHHHHHHHHHH---HHhcCceEEEEEechh
Q 040956 902 ATQDSLVILDELGRGTSTF-------DG-----YAIAYAVFRQL---VERINCRLLFATHYHP 949 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~-------Dg-----~aia~avle~L---~~~~~~tiL~aTH~~e 949 (1085)
...+++||+||++...... |. .......+..| +++.++++|+++|...
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 4579999999998876311 10 01122333344 3456999999999764
No 113
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.92 E-value=2.3e-05 Score=88.44 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=67.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH-------------------------hhccc-cccccccc---cchHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL-------------------------AQLGC-FVPCEMCV---LSLADTIFTR 874 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il-------------------------aqiG~-~VPa~~a~---i~~~d~I~tr 874 (1085)
+|++++|+||||+||||+++.+++..-. .++|. ++++.... ....+.+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 5789999999999999999999875421 12232 22322211 1223333211
Q ss_pred -cCCccccc---cc----cchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEe
Q 040956 875 -LGATDRIM---TG----ESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATH 946 (1085)
Q Consensus 875 -ig~~D~i~---~~----~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH 946 (1085)
....|.+. .| ....+.++..+++++ .....+++||..+. .+.. ..+..+.+..+.++|++||
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral--~~de~llvLDa~t~----~~~~----~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVT--KPNLVIFVGDALAG----NAIV----EQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH--CCSEEEEEEEGGGT----THHH----HHHHHHHHHSCCCEEEEEC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHh--cCCCCEEEEecHHH----HHHH----HHHHHHHHhcCCCEEEEeC
Confidence 11111110 11 233556666677777 56778889996632 3433 3445566556899999999
Q ss_pred chh
Q 040956 947 YHP 949 (1085)
Q Consensus 947 ~~e 949 (1085)
.-+
T Consensus 278 lD~ 280 (328)
T 3e70_C 278 LDA 280 (328)
T ss_dssp GGG
T ss_pred cCC
Confidence 653
No 114
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.90 E-value=2.1e-05 Score=92.97 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=28.7
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
++++|... +|.+++|+||||+|||||++.|+++.
T Consensus 284 ~~Isl~i~----~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGK----APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSC----TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeecc----CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45667665 68899999999999999999998754
No 115
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.86 E-value=4.5e-05 Score=84.91 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=67.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc---ccccccccccchHHHHHH---HcCCccccccccchhhHHhHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLG---CFVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETAS 897 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG---~~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela~ 897 (1085)
+|++++|+||||+||||+++.++..... .-| .++.++.......+.+.. ++|........ ..++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~-------~~~l~~ 175 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYT-------KEEFQQ 175 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSS-------HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCC-------HHHHHH
Confidence 4689999999999999999999875432 234 356666555454444332 22322111110 122344
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHH--hcCceEEE-EEechhHHHhhcCc
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE--RINCRLLF-ATHYHPLTKEFASH 957 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~--~~~~tiL~-aTH~~el~~~~~~~ 957 (1085)
++..+.++++||+|.+ |.++.+.. ....+...+.. ..+..+++ +||....+..+++.
T Consensus 176 al~~~~~~dlvIiDT~--G~~~~~~~-~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~ 235 (296)
T 2px0_A 176 AKELFSEYDHVFVDTA--GRNFKDPQ-YIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKR 235 (296)
T ss_dssp HHHHGGGSSEEEEECC--CCCTTSHH-HHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTT
T ss_pred HHHHhcCCCEEEEeCC--CCChhhHH-HHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHH
Confidence 4445678999999954 55555432 22222222210 11223334 48987666665554
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.84 E-value=1e-05 Score=92.45 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=27.1
Q ss_pred cccccCCCCCCCC--CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 812 NDILLGEDSDDCL--PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 812 ndisL~~~~~~~~--g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..+++.+. + ++.++|+||||||||||+|+++++
T Consensus 159 ~~v~~~v~----~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 159 KFIPKEAR----PFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GGSCTTTG----GGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hhCCHHHH----HhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 34555554 5 689999999999999999999875
No 117
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.78 E-value=5.3e-06 Score=83.99 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=35.0
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
...+.++++|.+. +|++++|+||||||||||+|.++++.
T Consensus 19 ~~~~l~~vsl~i~----~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 19 KKFAEILLKLHTE----KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHCCS----SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHhccccccC----CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999987 78999999999999999999998864
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.78 E-value=9.1e-06 Score=94.64 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=35.6
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCE--EEEEeCCCCCcchHHhhhhhH
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRT--LLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~--~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+++.+ ...| ++.. +++++|.+. +|.+ ++|+||||+||||||+++++.
T Consensus 16 ~l~~~~-~~~y-----~~~~-L~~vsl~i~----~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 16 TVPLAG-HVGF-----DSLP-DQLVNKSVS----QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCCCC-CC-C-----C--C-HHHHHHSCC-----CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEee-EEEE-----CCee-cCCCceEec----CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 355555 4444 3344 899999987 7899 999999999999999999875
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.77 E-value=0.00018 Score=82.05 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-ccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-LGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-iG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|+++.|+||||+|||||+.+++....... ...|+-.+...-. ....++|.. +++.-....-..++.++...+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~---~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP---VYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch---HHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 678999999999999999999987543221 1235544432221 145566643 22221111112234444444433
Q ss_pred CCCCcEEEEeCCCCCCC--hHH-----------HHHHHH--HHHHHHHHhcCceEEEEEec
Q 040956 902 ATQDSLVILDELGRGTS--TFD-----------GYAIAY--AVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs--~~D-----------g~aia~--avle~L~~~~~~tiL~aTH~ 947 (1085)
...++++|+|....=.. .++ ...++. ..|..++++.++++|++.|-
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 46789999999755443 111 122221 23445666678999999887
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=4.5e-05 Score=85.76 Aligned_cols=22 Identities=45% Similarity=0.478 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcchHHhhhhhHH
Q 040956 828 LLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 828 ~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
++|+||||+||||+++.++...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998843
No 121
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.65 E-value=9.9e-05 Score=73.85 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=38.9
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCc
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASH 957 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~ 957 (1085)
+.+|+++|||||+.|.|+.....+ ..++..+.+. +.++|++||+.++ ..++++
T Consensus 79 ~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~-~~tiiivsH~~~~-~~~~d~ 131 (148)
T 1f2t_B 79 AGEISLLILDEPTPYLDEERRRKL-ITIMERYLKK-IPQVILVSHDEEL-KDAADH 131 (148)
T ss_dssp HSSCSEEEEESCSCTTCHHHHHHH-HHHHHHTGGG-SSEEEEEESCGGG-GGGCSE
T ss_pred cCCCCEEEEECCCccCCHHHHHHH-HHHHHHHHcc-CCEEEEEEChHHH-HHhCCE
Confidence 578999999999999997765443 3455555443 7899999999854 345544
No 122
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.64 E-value=0.00012 Score=85.96 Aligned_cols=134 Identities=9% Similarity=0.091 Sum_probs=75.0
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhh--ccccccccccccchHHHHHH-HcCCcc-c----
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQ--LGCFVPCEMCVLSLADTIFT-RLGATD-R---- 880 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaq--iG~~VPa~~a~i~~~d~I~t-rig~~D-~---- 880 (1085)
..++++..+.. +|++++|.|++|+|||||+.+++......+ -..|+-.+...-.+..++.. ..|..- .
T Consensus 191 ~~LD~~~gGl~----~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g 266 (454)
T 2r6a_A 191 TELDRMTSGFQ----RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTG 266 (454)
T ss_dssp HHHHHHHSSBC----TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTS
T ss_pred HHHHhhcCCCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcC
Confidence 34555554554 789999999999999999999988655432 11233322222222223221 111100 0
Q ss_pred ---------------------c-ccccch-hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChH-------HHHHHHHHHH
Q 040956 881 ---------------------I-MTGEST-FLVECTETASVLQKATQDSLVILDELGRGTSTF-------DGYAIAYAVF 930 (1085)
Q Consensus 881 ---------------------i-~~~~St-f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~-------Dg~aia~avl 930 (1085)
+ ....+. -..++...++.+....++.+||+|++....... ....-....|
T Consensus 267 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~L 346 (454)
T 2r6a_A 267 KLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSL 346 (454)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 0 001111 123344444545444689999999998766321 1112233446
Q ss_pred HHHHHhcCceEEEEEe
Q 040956 931 RQLVERINCRLLFATH 946 (1085)
Q Consensus 931 e~L~~~~~~tiL~aTH 946 (1085)
..|+++.++++|+++|
T Consensus 347 k~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 347 KALARELEVPVIALSQ 362 (454)
T ss_dssp HHHHHHHTCCEEEEEC
T ss_pred HHHHHHhCCeEEEEec
Confidence 6677777999999999
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.63 E-value=0.00013 Score=82.58 Aligned_cols=121 Identities=15% Similarity=0.046 Sum_probs=66.6
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHHh-hcc-cccccccc--ccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVILA-QLG-CFVPCEMC--VLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ila-qiG-~~VPa~~a--~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a 902 (1085)
.++|+||+|+||||+++.++....-. ... .++.+... ...++..++..++.... ..+.+ ...-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGLS-RDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCCC-HHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCCC-HHHHHHHHHHHHhhc
Confidence 89999999999999999997643211 111 23333222 22345556666653211 11111 111122344455555
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHH---HH--hcCceEEEEEechhHHHhh
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQL---VE--RINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L---~~--~~~~tiL~aTH~~el~~~~ 954 (1085)
..+.+|+|||+... + .+ ....++..+ .. ..+..+|++||+.++...+
T Consensus 124 ~~~~vlilDE~~~l-~-~~---~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-A-PD---ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-C-HH---HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-c-hH---HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 67889999999655 2 12 122233222 22 0367889999998765544
No 124
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.54 E-value=2.2e-05 Score=87.77 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=45.9
Q ss_pred EEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccc
Q 040956 791 LKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE 861 (1085)
Q Consensus 791 l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~ 861 (1085)
|+++++...| + ..++++++|++. +|++++|+||||+|||||+++++++. -.++-.++|+.
T Consensus 102 i~~~~vs~~y-----~-~~vL~~vsl~i~----~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~ 161 (305)
T 2v9p_A 102 FNYQNIELIT-----F-INALKLWLKGIP----KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHK 161 (305)
T ss_dssp HHHTTCCHHH-----H-HHHHHHHHHTCT----TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTT
T ss_pred EEEEEEEEEc-----C-hhhhccceEEec----CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCc
Confidence 5666666555 1 468999999998 89999999999999999999998865 33333355543
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.51 E-value=2.1e-05 Score=89.94 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.9
Q ss_pred ccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 811 ~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+++++|.+. +|++++|+|||||||||||+++++.
T Consensus 165 ~~~l~~~i~----~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 165 MSFLRRAVQ----LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHH----TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHHh----cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 378888877 7889999999999999999999763
No 126
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.36 E-value=0.00013 Score=78.37 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
+.+++|+|||||||||++|.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999997
No 127
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.35 E-value=0.00058 Score=77.39 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=66.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-------cccccccccc-ccchHHHHHHHcCCcc-----cccccc-chh-
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-------LGCFVPCEMC-VLSLADTIFTRLGATD-----RIMTGE-STF- 888 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-------iG~~VPa~~a-~i~~~d~I~trig~~D-----~i~~~~-Stf- 888 (1085)
+|+++.|+||+|+|||||+.+++..+.+.. -..|+..+.. ....+-.+..++|... ++.-.. .+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 678999999999999999999987644421 1224444332 1112223445555431 221100 010
Q ss_pred -hHHh-HHHHHHHHhC-CCCcEEEEeCCCCCCChH--------HH---HHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 889 -LVEC-TETASVLQKA-TQDSLVILDELGRGTSTF--------DG---YAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 889 -~~Em-~ela~iL~~a-t~~sLvLLDEpgrGTs~~--------Dg---~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
..++ ..+...++.. .+..+||+|+++.-.... +. ..-....|..++++.++++|+++|-..-
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence 0111 1233344332 678999999995432211 11 1112223445556679999999997654
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00014 Score=81.99 Aligned_cols=128 Identities=12% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh---hcc-ccccccccc--cchHHHHHHHcCCccccccccchhhHHhHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA---QLG-CFVPCEMCV--LSLADTIFTRLGATDRIMTGESTFLVECTETAS 897 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila---qiG-~~VPa~~a~--i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~ 897 (1085)
.+..++|+||+|+|||||++.++....-. ... .++.+.... ..++..++..++.... ..+.+ ...-+..+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~-~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP-FTGLS-IAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-SSSCC-HHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCC-HHHHHHHHHH
Confidence 45689999999999999999987643221 111 123322111 1123333333332110 01111 1111334445
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH--HhcCceEEEEEechhHHHhh
Q 040956 898 VLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLV--ERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 898 iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~--~~~~~tiL~aTH~~el~~~~ 954 (1085)
.+.....+.+|+|||+....+..+ ..+...+++.+. ...+..+|++||...+...+
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HHhccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 554445588999999843221100 122333443332 22356889999988765443
No 129
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.32 E-value=6.3e-05 Score=79.88 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=21.5
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhh-hH
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATC-LA 848 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~-~i 848 (1085)
.....+++|.+. +|++++|+|||||||||++++++ +.
T Consensus 14 ~~~~~~~sl~v~----~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 14 AQTQGPGSMLKS----VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp --------CCEE----CCCEEEEECSCC----CHHHHHHC--
T ss_pred hcccCCCCcccC----CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 356678888887 78999999999999999999998 75
No 130
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.29 E-value=0.00054 Score=80.28 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=58.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhcc---ccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLG---CFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG---~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+..++|.||+|+|||||++.++....-..-| .|+.+... ...+...+.. + .+..+ ...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~----~~~~~~~~~~------~------~~~~~---~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF----LNDLVDSMKE------G------KLNEF---REK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH----HHHHHHHHHT------T------CHHHH---HHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH----HHHHHHHHHc------c------cHHHH---HHH
Confidence 3569999999999999999998754322112 12222211 1111111100 0 01112 222
Q ss_pred CC-CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 902 AT-QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 902 at-~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
.. .+.+|+|||+..-............+++.+.+. ++.+|++||..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~-~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-TCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 23 789999999976554322333344556666554 78899999973
No 131
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.27 E-value=0.00073 Score=75.51 Aligned_cols=88 Identities=22% Similarity=0.199 Sum_probs=49.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc--ccccccccccchHHH---HHHHcCCccccccccchhh-HH--hHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLG--CFVPCEMCVLSLADT---IFTRLGATDRIMTGESTFL-VE--CTET 895 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG--~~VPa~~a~i~~~d~---I~trig~~D~i~~~~Stf~-~E--m~el 895 (1085)
++++++|+||||+||||+++.++...-. +-| .++.++..+....++ ...++|..- +.. .+... .+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~~-~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATV-ISH-SEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-ECC-STTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcE-Eec-CCccCHHHHHHHHH
Confidence 5789999999999999999999875422 222 122333333333332 233444321 111 11111 11 1123
Q ss_pred HHHHHhCCCCcEEEEeCCCCC
Q 040956 896 ASVLQKATQDSLVILDELGRG 916 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrG 916 (1085)
+.++ ..++++||+|||++.
T Consensus 180 ~~a~--~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 180 AHAL--ARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHHH--HTTCSEEEEEECCCC
T ss_pred HHHH--hcCCCEEEEECCCch
Confidence 4444 578999999999874
No 132
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.26 E-value=0.0001 Score=76.05 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|++++|+|||||||||+++++++.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999999875
No 133
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.22 E-value=0.0011 Score=79.27 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=49.8
Q ss_pred chhhHHhHHHHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcCcc
Q 040956 886 STFLVECTETASVLQKATQD--SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFASHP 958 (1085)
Q Consensus 886 Stf~~Em~ela~iL~~at~~--sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~~~ 958 (1085)
|........+|++| +.+| .++|||||++|.|+.....+. .++..+.+ +.++|++||+++++.. +++.
T Consensus 399 SgG~~qrv~la~~l--~~~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~--~~~vi~itH~~~~~~~-~d~~ 467 (517)
T 4ad8_A 399 SGGELSRVMLAVST--VLGADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD--TRQVLVVTHLAQIAAR-AHHH 467 (517)
T ss_dssp CSSHHHHHHHHHHH--HHCCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH--HSEEEEECCCHHHHHH-SSEE
T ss_pred CHHHHHHHHHHHHH--HhCCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC--CCEEEEEecCHHHHHh-CCEE
Confidence 55555556677766 6677 999999999999988765544 45556654 7899999999998864 5543
No 134
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.18 E-value=0.00051 Score=87.01 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=60.4
Q ss_pred HHHHcCCcc----ccccccchhhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEe
Q 040956 871 IFTRLGATD----RIMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATH 946 (1085)
Q Consensus 871 I~trig~~D----~i~~~~Stf~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH 946 (1085)
.+..+|... .....+|........+|++|.....+.++|||||+.|+++.+...+. .++..|.+. |.|+|++||
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~-G~TvivVtH 524 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDL-GNTVIVVEH 524 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTT-TCEEEEECC
T ss_pred HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhc-CCEEEEEeC
Confidence 455667542 33344555555566688888332344599999999999999876654 456666654 899999999
Q ss_pred chhHHHhhcCcccee
Q 040956 947 YHPLTKEFASHPHVT 961 (1085)
Q Consensus 947 ~~el~~~~~~~~~V~ 961 (1085)
|.+++.. +++..+.
T Consensus 525 d~~~~~~-aD~ii~l 538 (916)
T 3pih_A 525 DEEVIRN-ADHIIDI 538 (916)
T ss_dssp CHHHHHT-CSEEEEE
T ss_pred CHHHHHh-CCEEEEE
Confidence 9998865 6654433
No 135
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.17 E-value=0.00093 Score=84.77 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=60.0
Q ss_pred HHHcCCc----cccccccchhhHHhHHHHHHHHhCCC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEE
Q 040956 872 FTRLGAT----DRIMTGESTFLVECTETASVLQKATQ--DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945 (1085)
Q Consensus 872 ~trig~~----D~i~~~~Stf~~Em~ela~iL~~at~--~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aT 945 (1085)
+..+|.. +.....+|.....+.++|.+| +.+ +.|+|||||+.|+++.+...+ ..++..|.+. |.|+|+|+
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL--~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~~-G~TVIvVe 580 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQI--GSGLVGVLYVLDEPSIGLHQRDNRRL-IETLTRLRDL-GNTLIVVE 580 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHH--TTCCCSCEEEEECTTTTCCHHHHHHH-HHHHHHHHHT-TCEEEEEC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHH--hhCCCCcEEEEeCcccCCCHHHHHHH-HHHHHHHHHc-CCEEEEEC
Confidence 4555654 333344555555556677777 655 589999999999999886654 4577778664 99999999
Q ss_pred echhHHHhhcCcccee
Q 040956 946 HYHPLTKEFASHPHVT 961 (1085)
Q Consensus 946 H~~el~~~~~~~~~V~ 961 (1085)
|+.+++. .+++..+.
T Consensus 581 Hdl~~i~-~ADrIi~L 595 (993)
T 2ygr_A 581 HDEDTIE-HADWIVDI 595 (993)
T ss_dssp CCHHHHH-TCSEEEEE
T ss_pred CCHHHHH-hCCEEEEe
Confidence 9999876 46664443
No 136
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.14 E-value=0.0024 Score=72.88 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=66.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCc-ccccc-ccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGAT-DRIMT-GESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~-D~i~~-~~Stf~~Em~ela~iL~ 900 (1085)
+|++++|.||+|+|||||..+++...... .-..|+..+...-. ....++|.. +++.- ...+ ..++.++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~---~~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP---IYARKLGVDIDNLLCSQPDT-GEQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH---HHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccH---HHHHHcCCChhheeeeCCCC-HHHHHHHHHHHH
Confidence 67899999999999999999987654432 12335554432211 124556642 22211 1111 223444444443
Q ss_pred hCCCCcEEEEeCCCCCCChHH-----H-----H--HHHHHHHHHH---HHhcCceEEEEEechh
Q 040956 901 KATQDSLVILDELGRGTSTFD-----G-----Y--AIAYAVFRQL---VERINCRLLFATHYHP 949 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~D-----g-----~--aia~avle~L---~~~~~~tiL~aTH~~e 949 (1085)
.....++||+|.++.=....+ + . .....++..| +++.++++|++.|-..
T Consensus 138 ~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 346789999999876553211 0 0 1112233333 4556999999988654
No 137
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.14 E-value=0.00091 Score=84.59 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHcCCc----cccccccchhhHHhHHHHHHHHhCCC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEE
Q 040956 872 FTRLGAT----DRIMTGESTFLVECTETASVLQKATQ--DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945 (1085)
Q Consensus 872 ~trig~~----D~i~~~~Stf~~Em~ela~iL~~at~--~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aT 945 (1085)
+..+|.. +.....+|..+....++|.+| +.+ +.|+|||||+.|+++.+... ...++..|.+ .|.|+|+|+
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL--~~~~~~~llILDEPTagLdp~~~~~-L~~~L~~Lr~-~G~TVIvVe 563 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQI--GSRLTGVLYVLDEPSIGLHQRDNDR-LIATLKSMRD-LGNTLIVVE 563 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHH--TTCCCSCEEEEECTTTTCCGGGHHH-HHHHHHHHHT-TTCEEEEEC
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHH--hhCCCCCEEEEeCcccCCCHHHHHH-HHHHHHHHHh-CCCEEEEEe
Confidence 5566754 333444555555556677777 555 58999999999999998665 4457777865 489999999
Q ss_pred echhHHHhhcCcccee
Q 040956 946 HYHPLTKEFASHPHVT 961 (1085)
Q Consensus 946 H~~el~~~~~~~~~V~ 961 (1085)
|+.+++. .+++..+.
T Consensus 564 Hdl~~i~-~ADrIi~L 578 (972)
T 2r6f_A 564 HDEDTML-AADYLIDI 578 (972)
T ss_dssp CCHHHHH-SCSEEEEE
T ss_pred cCHHHHH-hCCEEEEe
Confidence 9999876 46665443
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.13 E-value=0.0005 Score=71.98 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=54.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhc-cccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQL-GCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA 902 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqi-G~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a 902 (1085)
.+..++|+||.|+||||+++.++........ -.++.+....- .+ ..++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~--------------~~--------------~~~~~~~ 102 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS--------------IS--------------TALLEGL 102 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG--------------SC--------------GGGGTTG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------------HH--------------HHHHHhc
Confidence 3568999999999999999999764322100 01222211000 00 0111223
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCce-EEEEEech
Q 040956 903 TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR-LLFATHYH 948 (1085)
Q Consensus 903 t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~t-iL~aTH~~ 948 (1085)
..+.+|++||+..-............+++.+... +.. +|++|+..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence 5689999999865443332233344556665554 444 88888753
No 139
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.11 E-value=2.5e-05 Score=90.99 Aligned_cols=33 Identities=33% Similarity=0.239 Sum_probs=27.9
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++++|... .+..++|+|+||+||||||++++..
T Consensus 148 ~~i~lelk----~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELM----LIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEC----CSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEc----CCCEEEEECCCCCcHHHHHHHHHcC
Confidence 46777766 5678999999999999999999765
No 140
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.08 E-value=0.0016 Score=72.93 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=65.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-------cccccccccc-ccchHHHHHHHcCCcc-----ccccccchhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-------LGCFVPCEMC-VLSLADTIFTRLGATD-----RIMTGESTFLV 890 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-------iG~~VPa~~a-~i~~~d~I~trig~~D-----~i~~~~Stf~~ 890 (1085)
+|+++.|.||+|+|||||+.+++..+...+ -..|+-.+.. ....+-.+..++|..- ++.-.. .+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~-~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR-AINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE-CCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEe-CCCH
Confidence 678999999999999999999987543321 1234444332 1112223445555431 111110 1111
Q ss_pred H----h-HHHHHHHHhCCCCcEEEEeCCCCCCCh--------HHHHHHHH---HHHHHHHHhcCceEEEEEechhH
Q 040956 891 E----C-TETASVLQKATQDSLVILDELGRGTST--------FDGYAIAY---AVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 891 E----m-~ela~iL~~at~~sLvLLDEpgrGTs~--------~Dg~aia~---avle~L~~~~~~tiL~aTH~~el 950 (1085)
+ + ..+...++...++.+||+|+++.-... .+...... ..|..++++.++++|++.|-..-
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 1 1 223333433367899999998532111 11111112 23344555669999999886543
No 141
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.08 E-value=0.00043 Score=71.47 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
..++|+||+|+|||||++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987643
No 142
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.06 E-value=0.0011 Score=83.50 Aligned_cols=84 Identities=19% Similarity=0.119 Sum_probs=58.6
Q ss_pred HHHcCCcc----ccccccchhhHHhHHHHHHHHhCCCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEE
Q 040956 872 FTRLGATD----RIMTGESTFLVECTETASVLQKATQD--SLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFAT 945 (1085)
Q Consensus 872 ~trig~~D----~i~~~~Stf~~Em~ela~iL~~at~~--sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aT 945 (1085)
+..+|... .....+|.....+.++|++| +.++ .|+|||||+.|+++.+...+ ..++..|.+. |.|+|+++
T Consensus 363 L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL--~~~p~~~llILDEPT~~Ld~~~~~~L-~~~l~~L~~~-G~TVIvVe 438 (842)
T 2vf7_A 363 LLHLGLGYLGLDRSTPTLSPGELQRLRLATQL--YSNLFGVVYVLDEPSAGLHPADTEAL-LSALENLKRG-GNSLFVVE 438 (842)
T ss_dssp HHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHT--TTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHTT-TCEEEEEC
T ss_pred HHhCCCCcCCccCCcCcCCHHHHHHHHHHHHH--hhCCCCeEEEeeCccccCCHHHHHHH-HHHHHHHHHc-CCEEEEEc
Confidence 44566542 23334444444555677777 6666 59999999999999987654 4577788664 89999999
Q ss_pred echhHHHhhcCccce
Q 040956 946 HYHPLTKEFASHPHV 960 (1085)
Q Consensus 946 H~~el~~~~~~~~~V 960 (1085)
|+++++. .+++..+
T Consensus 439 Hdl~~l~-~aD~ii~ 452 (842)
T 2vf7_A 439 HDLDVIR-RADWLVD 452 (842)
T ss_dssp CCHHHHT-TCSEEEE
T ss_pred CCHHHHH-hCCEEEE
Confidence 9999775 4665433
No 143
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.01 E-value=0.0018 Score=71.92 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.6
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+++++|+|+||+||||+++.+++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998754
No 144
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.00 E-value=0.00076 Score=75.15 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=53.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhh-ccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhCC
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQ-LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKAT 903 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaq-iG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~at 903 (1085)
+..++|+||+|+|||||++.++....-.. --.++.+... ...+...+. . ..+..+... ..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~----~~~~~~~~~------~------~~~~~~~~~---~~ 97 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF----AQAMVEHLK------K------GTINEFRNM---YK 97 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH----HHHHHHHHH------H------TCHHHHHHH---HH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH----HHHHHHHHH------c------CcHHHHHHH---hc
Confidence 45799999999999999999987433210 0112222111 111111110 0 001111111 23
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 904 QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 904 ~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
++.+|+|||+..-............+++.+... +..+|++|+.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~ 140 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDR 140 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 589999999855322112223344455555554 6677777764
No 145
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.99 E-value=0.00022 Score=84.28 Aligned_cols=36 Identities=25% Similarity=0.077 Sum_probs=32.2
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.++++++|.+. + ++++|+||||||||||||+++++.
T Consensus 18 ~~l~~vsl~i~----~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 18 NGFFARTFDFD----E-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp TTEEEEEEECC----S-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccceEEEEc----c-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 56789999987 6 899999999999999999999864
No 146
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.96 E-value=0.00024 Score=72.90 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.6
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
|++++|+|||||||||++|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.93 E-value=0.00033 Score=73.24 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+|++++|+||||||||||+|.+++..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998854
No 148
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.89 E-value=0.00034 Score=72.18 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=30.8
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.|+++++.+-|- ..++++ |... +|..++|+|+||+|||||++.+++.
T Consensus 3 ~l~~~~~~~~~~------~~~l~~--~~~~----~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 3 NLNYQQTHFVMS------APDIRH--LPSD----TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp --------CEEE------ESSGGG--SSCS----CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred chhhhhhhheee------cCCHhH--CCCC----CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467888888772 356666 5554 5789999999999999999999764
No 149
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00032 Score=73.00 Aligned_cols=25 Identities=44% Similarity=0.671 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|++++|+||||+|||||+|.+++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4679999999999999999999875
No 150
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.83 E-value=0.00044 Score=70.17 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=25.7
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++++... +| +.+|+||||+||||+|++|..+
T Consensus 18 ~~~~~~~~----~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFS----KG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECC----SS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecC----CC-cEEEECCCCCCHHHHHHHHHHH
Confidence 45566554 34 8999999999999999999764
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.82 E-value=0.0004 Score=70.87 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|++++|+|||||||||++|.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999999999774
No 152
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.79 E-value=0.00019 Score=78.03 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=33.1
Q ss_pred CEEEEEcc-eeeeeecCCCCcccccccccCCCCCCCC---CCEEEEEeCCCCCcchHHhhhhh
Q 040956 789 PVLKIKGL-WHPFALGENGGLPVPNDILLGEDSDDCL---PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 789 ~~l~ik~l-rhp~~~~~~~~~~V~ndisL~~~~~~~~---g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.|+++++ .+.| .+...+++|++|.+. + |++++|+|++||||||+.|.++.
T Consensus 16 ~~l~~~~~~~~~~----~~~~~~l~~~~~~i~----~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPF----DEEQQILKKKAEEVK----PYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp --------------------CHHHHHHHHTTH----HHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEcceeeEEe----cCcchhhhhhhhhhh----hhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 47899998 7777 134679999999987 6 78999999999999999999976
No 153
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.74 E-value=0.0022 Score=68.68 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=28.2
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..+.+++++... +| ++|+||||+|||||+|.++..
T Consensus 38 ~~~~~~~~~~~~----~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 38 PSRFHEMGARIP----KG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHTTCCCC----SE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCC----Ce--EEEECCCCCCHHHHHHHHHHH
Confidence 346677777765 33 999999999999999999874
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.74 E-value=0.0029 Score=63.14 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=57.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccc--cccccch--HHHHHHHcCCccccccccchhhHHhHHHHHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC--EMCVLSL--ADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa--~~a~i~~--~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~ 900 (1085)
+..++|+||.|+||||+++.++....-.. +|. ....+-. +..+.. +. .....+...+.++...+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~ 111 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGE----VPEGLKGRRVLALDMGALVA--GA-----KYRGEFEERLKGVLNDLA 111 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTC----SCGGGTTCEEEEECHHHHHT--TT-----CSHHHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCC----CchhhcCCcEEEeeHHHHhc--cC-----CccccHHHHHHHHHHHHh
Confidence 45789999999999999999876432211 111 0000000 111111 00 001111222333333333
Q ss_pred hCCCCcEEEEeCCCCCCChH--HHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 901 KATQDSLVILDELGRGTSTF--DGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~--Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
....+.+|+|||.-.-.... .+...+..++..+....+..+|++|+......
T Consensus 112 ~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 112 KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 165 (195)
T ss_dssp HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHH
T ss_pred hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHH
Confidence 45667899999984432110 00001233444555555678888888776543
No 155
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.73 E-value=0.0014 Score=82.21 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=65.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhh-----ccccccccccccchHHHHHHHcCCccccccc--------------c
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQ-----LGCFVPCEMCVLSLADTIFTRLGATDRIMTG--------------E 885 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaq-----iG~~VPa~~a~i~~~d~I~trig~~D~i~~~--------------~ 885 (1085)
++.++|+||+|+||||++.++.+.....+ +.+.+|-......+.+++...++..-....| .
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I 188 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTIL 188 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCE
Confidence 46899999999999998888744332222 2333454333334445555544421111111 0
Q ss_pred chhhHHh-HHHHHHHHhCCCCcEEEEeCCC-CCCChHHHHHHHHHHHHHHHHhc--CceEEE-EEechhHHHhhcC
Q 040956 886 STFLVEC-TETASVLQKATQDSLVILDELG-RGTSTFDGYAIAYAVFRQLVERI--NCRLLF-ATHYHPLTKEFAS 956 (1085)
Q Consensus 886 Stf~~Em-~ela~iL~~at~~sLvLLDEpg-rGTs~~Dg~aia~avle~L~~~~--~~tiL~-aTH~~el~~~~~~ 956 (1085)
-....++ .+....-....+.++|||||+- |+.++.. ...++..+.... ..++++ +||+.+....+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~----~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDI----LMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHH----HHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHH----HHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 0011121 1111111125788999999996 4655332 233444444321 235566 5998765554433
No 156
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.71 E-value=0.0022 Score=72.13 Aligned_cols=124 Identities=21% Similarity=0.199 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh----ccc---cccccc--cccchHHHHHHHcCCccccccccchhhHH-hH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ----LGC---FVPCEM--CVLSLADTIFTRLGATDRIMTGESTFLVE-CT 893 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq----iG~---~VPa~~--a~i~~~d~I~trig~~D~i~~~~Stf~~E-m~ 893 (1085)
.+..++|+||.|+||||+++.++....-.. .+. ++.+.. ....++..++..++..-. ..+.+ ..+ +.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~--~~~~~~ 119 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP-FTGLS--VGEVYE 119 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC-SSCCC--HHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC-CCCCC--HHHHHH
Confidence 356799999999999999999976432110 021 222221 112344556666654211 11111 112 22
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHH---hcCceEEEEEechhH
Q 040956 894 ETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVE---RINCRLLFATHYHPL 950 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~---~~~~tiL~aTH~~el 950 (1085)
.+...+.....+.+|+|||+..-............+++.... ..+..+|++|+...+
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 344444333456799999984321110012223333332210 235678889988743
No 157
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.69 E-value=0.01 Score=67.95 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCc-cccc-cccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGAT-DRIM-TGESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~-D~i~-~~~Stf~~Em~ela~iL~ 900 (1085)
+|++++|.||.|+|||||..+++...... .-..|+..+...-.. ...++|.. +++. ....++ .++.++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~-e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNG-EQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeecCCcH-HHHHHHHHHHH
Confidence 67899999999999999999887654322 123355544322111 34556643 2221 111121 23334444343
Q ss_pred hCCCCcEEEEeCCCCCCC--hHHH----------HHHHHHHHHHH---HHhcCceEEEEEechh
Q 040956 901 KATQDSLVILDELGRGTS--TFDG----------YAIAYAVFRQL---VERINCRLLFATHYHP 949 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs--~~Dg----------~aia~avle~L---~~~~~~tiL~aTH~~e 949 (1085)
.....++||+|.++.=.. ..++ ......++..| +++.++++|++.|-..
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 346789999999875431 1111 11122344444 4567899999988754
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.65 E-value=0.00064 Score=70.42 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=22.8
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+..+..+|++|... ++.+++|+||+||||||+.+.++..
T Consensus 10 ~~~~~~~~~~~~~~----~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 10 GVDLGTENLYFQSN----AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCceeEecC----CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999987 6889999999999999999999753
No 159
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.65 E-value=0.0024 Score=66.05 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|++++|+|||||||||++|.++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999764
No 160
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.65 E-value=0.00038 Score=77.63 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|+||||||||||+++++++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999875
No 161
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.61 E-value=0.0049 Score=68.74 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL 851 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il 851 (1085)
+|+++.|.||+|+|||||..+++..+.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l 124 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQN 124 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999999875443
No 162
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.61 E-value=0.013 Score=65.84 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=27.6
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.+++|... ++++++|+||||+||||++..++...
T Consensus 96 ~~l~~~~~----~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKEN----RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTT----SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCC----CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666544 57899999999999999999998743
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0008 Score=68.69 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.|++++|+||||||||||++.++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999998763
No 164
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.59 E-value=0.00061 Score=77.11 Aligned_cols=38 Identities=21% Similarity=0.095 Sum_probs=33.4
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
..+.+++++... +|.+++|+||||+||||||+.+++..
T Consensus 42 ~~~l~~i~~~~~----~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 42 RDLIDAVLPQTG----RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHHGGGCC----CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccC----CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 467888998876 78999999999999999999998754
No 165
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.58 E-value=0.0039 Score=72.85 Aligned_cols=88 Identities=17% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccc---cccccccccchHHHHH---HHcCCccccccccchhhHHhHHHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGC---FVPCEMCVLSLADTIF---TRLGATDRIMTGESTFLVECTETASV 898 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~---~VPa~~a~i~~~d~I~---trig~~D~i~~~~Stf~~Em~ela~i 898 (1085)
+.+++++||||+||||++..++... +.-|. ++.++..+...++.+. .++|..-........ ..++ ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d-p~~i--~~~a 171 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN-PIEI--AKKG 171 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC-HHHH--HHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC-HHHH--HHHH
Confidence 5689999999999999999998643 33332 2233333333444332 223321111000000 1111 1233
Q ss_pred HHhC--CCCcEEEEeCCCCCC
Q 040956 899 LQKA--TQDSLVILDELGRGT 917 (1085)
Q Consensus 899 L~~a--t~~sLvLLDEpgrGT 917 (1085)
+..+ ...++||+|+||+..
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHhcCCCEEEEECCCCcc
Confidence 4444 478999999998754
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.57 E-value=0.0097 Score=61.43 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+||.|+||||+++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 167
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.55 E-value=0.01 Score=69.43 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh--ccccccccccccchHHHHHHH-cCCc-ccccc----------------
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ--LGCFVPCEMCVLSLADTIFTR-LGAT-DRIMT---------------- 883 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq--iG~~VPa~~a~i~~~d~I~tr-ig~~-D~i~~---------------- 883 (1085)
+|++++|.|++|+|||||+.+++..+...+ -..|+..+...-.+..++... .+.. +.+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~ 278 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVAS 278 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999987655432 112333322222233333321 1110 00100
Q ss_pred ----------ccch-hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCCh---------HHHHHHHHHHHHHHHHhcCceEEE
Q 040956 884 ----------GEST-FLVECTETASVLQKATQDSLVILDELGRGTST---------FDGYAIAYAVFRQLVERINCRLLF 943 (1085)
Q Consensus 884 ----------~~St-f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~---------~Dg~aia~avle~L~~~~~~tiL~ 943 (1085)
..+. -..++....+-+..-.+..+||+|.+..=... .....-....|..|+++.++++|+
T Consensus 279 ~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 358 (444)
T 2q6t_A 279 RLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIA 358 (444)
T ss_dssp HHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 0010 11233333333322357899999997532221 111222334456667778999999
Q ss_pred EEechh
Q 040956 944 ATHYHP 949 (1085)
Q Consensus 944 aTH~~e 949 (1085)
++|-..
T Consensus 359 lsql~r 364 (444)
T 2q6t_A 359 LSQLSR 364 (444)
T ss_dssp EEECCG
T ss_pred EecCCc
Confidence 999643
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.52 E-value=0.0071 Score=71.51 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.4
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.-++|+||+|+|||||+|.++.-
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999873
No 169
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.49 E-value=0.001 Score=68.47 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|+|||||||||+++.++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999764
No 170
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.48 E-value=0.0049 Score=61.49 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+..++|+||.|+||||+++.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998764
No 171
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.46 E-value=0.00081 Score=68.71 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
|++++|+|||||||||++|.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999965
No 172
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.45 E-value=0.021 Score=63.67 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=24.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL 851 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il 851 (1085)
+|++++|.|+.|+|||||+.+++.....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999865443
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.45 E-value=0.00059 Score=83.12 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 806 GGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 806 ~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
|...+.+++++... .|+.++|+||||+|||||+|.++...
T Consensus 45 G~~~~l~~l~~~i~----~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 45 GQEHAVEVIKTAAN----QKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp SCHHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CchhhHhhcccccc----CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 45567777887766 57799999999999999999998743
No 174
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.43 E-value=0.0065 Score=62.21 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=45.1
Q ss_pred ccchhhHHhHHHHHHHHh--CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 884 GESTFLVECTETASVLQK--ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 884 ~~Stf~~Em~ela~iL~~--at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
.+|.....+..+|+++.. ..++.++|||||++|+|+.....+.. ++..+.. +.++|++||+..+..
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~--~~~~ivith~~~~~~ 131 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK--ESQFIVITLRDVMMA 131 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT--TSEEEEECSCHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc--CCEEEEEEecHHHHH
Confidence 456555556667777743 25679999999999999776554443 4444432 468999999976643
No 175
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.35 E-value=0.0034 Score=69.51 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+..++|+||+|+||||++|.++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4568999999999999999999763
No 176
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.35 E-value=0.0022 Score=68.36 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=60.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh--ccccccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ--LGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq--iG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|.+++||||-|+||||++.+++.-..-+. +..+-|....+ + ...|..++|..-... .... ..++...+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~~~~~~-~~~~----~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGTSLPSV-EVES----APEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCCSSCCE-EESS----THHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCCCcccc-ccCC----HHHHHHHHHH
Confidence 577999999999999999887765433321 12122333222 1 113455555321111 1111 1223333322
Q ss_pred C---CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 902 A---TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 902 a---t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
. .++++|++||.-- ++. . ...++..|.+. +..+|++-|+
T Consensus 84 ~~~~~~~dvViIDEaQ~----l~~-~-~ve~l~~L~~~-gi~Vil~Gl~ 125 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQF----FDD-R-ICEVANILAEN-GFVVIISGLD 125 (223)
T ss_dssp TTSCTTCCEEEECSGGG----SCT-H-HHHHHHHHHHT-TCEEEEECCS
T ss_pred HhhCCCCCEEEEecCcc----CcH-H-HHHHHHHHHhC-CCeEEEEecc
Confidence 1 3589999999832 211 1 22345666665 8999999994
No 177
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.34 E-value=0.015 Score=65.04 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=67.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh---hccccccccccccchHHHHHHHcCCc-cccccccchhhHHh-HHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA---QLGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVEC-TETASV 898 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila---qiG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em-~ela~i 898 (1085)
+| ++.|.||.|+|||||+-+++...... ....|+-++...-+ ....++|.. +++.-..-+-..++ .++...
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56 89999999999999987775543321 22346655443322 235677753 33332222222233 444444
Q ss_pred HHh--CCCCcEEEEeCCCCCCC--hHHH-------------HHHHHHH--HHHHHHhcCceEEEEEechh
Q 040956 899 LQK--ATQDSLVILDELGRGTS--TFDG-------------YAIAYAV--FRQLVERINCRLLFATHYHP 949 (1085)
Q Consensus 899 L~~--at~~sLvLLDEpgrGTs--~~Dg-------------~aia~av--le~L~~~~~~tiL~aTH~~e 949 (1085)
+.. ...++||++|-...=.. ..++ ..++.++ |..++++.++++||+-|-..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 422 35789999998754321 1111 1122222 23346667999999999876
No 178
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.013 Score=65.73 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|..++|+||.|+|||||..+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4677899999999999999999764
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.28 E-value=0.0089 Score=65.35 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..++|+||+|+||||++|.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 180
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.25 E-value=0.0019 Score=76.88 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+..++|.|++||||||+|+.+..-
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998653
No 181
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.22 E-value=0.0026 Score=70.90 Aligned_cols=26 Identities=35% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVI 850 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~i 850 (1085)
+..++|+||.|+|||+|++.++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987443
No 182
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.0041 Score=66.06 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
|+.++|.||+|+||||++.+...-.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~ 100 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDD 100 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcc
Confidence 5689999999999999998775543
No 183
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.19 E-value=0.0019 Score=67.53 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|++++|+||||+||||+++.++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999998753
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.17 E-value=0.0017 Score=65.00 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.+++|+|||||||||++|.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.15 E-value=0.015 Score=65.72 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhc-cccccccccccchHHHHHHHc-CCc-cccccc-cchhhHHhHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQL-GCFVPCEMCVLSLADTIFTRL-GAT-DRIMTG-ESTFLVECTETASVL 899 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqi-G~~VPa~~a~i~~~d~I~tri-g~~-D~i~~~-~Stf~~Em~ela~iL 899 (1085)
+|++++|.|++|+|||||+.+++........ ..|+.-+...-.+..++.... +.. +.+..+ ++ ..++.+++.+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls--~~e~~~l~~a~ 122 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLD--DDQWENLAKCF 122 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCC--HHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCC--HHHHHHHHHHH
Confidence 6889999999999999999999876544211 113322222222333333221 111 112111 11 23445555555
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhc-CceEEEEEec
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERI-NCRLLFATHY 947 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~-~~tiL~aTH~ 947 (1085)
..+....|.|.|+|+ .+..+ ..+.+..+.... ++.+||+-|-
T Consensus 123 ~~l~~~~l~I~d~~~--~si~~----i~~~ir~l~~~~gg~~lIVIDyL 165 (338)
T 4a1f_A 123 DHLSQKKLFFYDKSY--VRIEQ----IRLQLRKLKSQHKELGIAFIDYL 165 (338)
T ss_dssp HHHHHSCEEEECCTT--CCHHH----HHHHHHHHHHHCTTEEEEEEEEE
T ss_pred HHHhcCCeEEeCCCC--CcHHH----HHHHHHHHHHhcCCCCEEEEech
Confidence 445556788888874 33222 234455555555 5677777543
No 186
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.15 E-value=0.0022 Score=66.42 Aligned_cols=36 Identities=25% Similarity=0.132 Sum_probs=28.5
Q ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
......+... +|.+++|+|||||||||++|.++...
T Consensus 14 ~~~~~~~~~~----~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 14 KVDRQRLLDQ----KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHHHHHTS----CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555444 68899999999999999999998753
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.08 E-value=0.0022 Score=64.58 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|+|||||||||++|.++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5789999999999999999998764
No 188
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.06 E-value=0.0034 Score=62.47 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.2
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+|+||||+||||+|..|..
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999976
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.04 E-value=0.0024 Score=67.78 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=23.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|.|||||||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999999999999999875
No 190
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.94 E-value=0.0067 Score=68.15 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.++|+||||+|||||+|.++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999875
No 191
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.89 E-value=0.0028 Score=72.32 Aligned_cols=33 Identities=30% Similarity=0.179 Sum_probs=27.4
Q ss_pred ccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 811 PNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 811 ~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++++|... +| +++|+||||+||||+|++|+++
T Consensus 17 ~~~~~~~~~----~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 17 LAPGTLNFP----EG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEECC----SE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeeEEEEc----CC-eEEEECCCCCChhHHHHHHHHh
Confidence 356677665 45 9999999999999999999864
No 192
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.85 E-value=0.014 Score=64.36 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+..++|.||.|+|||++.+.++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999764
No 193
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.85 E-value=0.003 Score=73.56 Aligned_cols=25 Identities=40% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|+|||||||||||+++++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 5779999999999999999999774
No 194
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.83 E-value=0.0023 Score=73.45 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=31.6
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.+++++++. +|++++|+||||+|||||++.++..
T Consensus 157 ~~l~~~~~~i~----~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIP----KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCT----TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccC----CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46778888887 7889999999999999999999873
No 195
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.81 E-value=0.0014 Score=78.15 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=29.6
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.+++++.+. .|..++|+|||||||||+|+++++.
T Consensus 248 ~~l~~l~~~v~----~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 248 GVLAYLWLAIE----HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHH----TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHh----CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567777665 5778999999999999999999763
No 196
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.79 E-value=0.0024 Score=70.01 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=28.3
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..+.+++++... +| ++|+||||+|||||+|++++.
T Consensus 33 ~~~l~~~~l~~~----~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 33 PDQFKALGLVTP----AG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHHTTCCCC----SE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCC----Ce--EEEECCCCCcHHHHHHHHHHH
Confidence 345677777765 34 999999999999999999874
No 197
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.77 E-value=0.02 Score=71.99 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++.++|+||+|+|||||+|.++..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4568999999999999999999763
No 198
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.73 E-value=0.013 Score=63.65 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+..++|+||.|+||||+++.++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999975
No 199
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.69 E-value=0.0039 Score=67.25 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
+|.+++|+|||||||||++|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999997
No 200
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.68 E-value=0.018 Score=63.10 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
..++|+||+|+||||+.|.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 368999999999999999998754
No 201
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.59 E-value=0.054 Score=64.22 Aligned_cols=126 Identities=11% Similarity=0.006 Sum_probs=65.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh--ccccccccccccchHHHHHHH-cCCc--c-------------------
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ--LGCFVPCEMCVLSLADTIFTR-LGAT--D------------------- 879 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq--iG~~VPa~~a~i~~~d~I~tr-ig~~--D------------------- 879 (1085)
+|++++|.|+.|+|||||+-+++......+ -..|+..+...-.+..+++.. .|.. .
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 678999999999999999999987544321 122333332222233333221 1111 0
Q ss_pred ------ccc--cccc-hhhHHhHHHHHHHHhCCCCcEEEEeCCCCCC------ChHHHHHHHHHHHHHHHHhcCceEEEE
Q 040956 880 ------RIM--TGES-TFLVECTETASVLQKATQDSLVILDELGRGT------STFDGYAIAYAVFRQLVERINCRLLFA 944 (1085)
Q Consensus 880 ------~i~--~~~S-tf~~Em~ela~iL~~at~~sLvLLDEpgrGT------s~~Dg~aia~avle~L~~~~~~tiL~a 944 (1085)
++. .... .-..++....+-+....+..+||+|=+..=. +......-...-|..++++.++++|++
T Consensus 321 ~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~ 400 (503)
T 1q57_A 321 ELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI 400 (503)
T ss_dssp HHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 000 0000 1112222222223234578999999664311 212222222334556667779999999
Q ss_pred Eechh
Q 040956 945 THYHP 949 (1085)
Q Consensus 945 TH~~e 949 (1085)
+|-..
T Consensus 401 ~q~~r 405 (503)
T 1q57_A 401 CHLKN 405 (503)
T ss_dssp EECCC
T ss_pred EcCCc
Confidence 99765
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.55 E-value=0.0053 Score=63.70 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++.+++|+|||||||||+++.++..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999774
No 203
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.54 E-value=0.007 Score=63.24 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.+|+||||+||||+|..|..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999998653
No 204
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.52 E-value=0.094 Score=61.42 Aligned_cols=126 Identities=9% Similarity=0.044 Sum_probs=66.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-ccccccccccccchHHHHHHHc-CCc--------------c--------
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-LGCFVPCEMCVLSLADTIFTRL-GAT--------------D-------- 879 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-iG~~VPa~~a~i~~~d~I~tri-g~~--------------D-------- 879 (1085)
+|++++|.|+.|.|||||+-+++..+.... -..|+..+...-.+..++.... |.. +
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~ 275 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 275 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHH
Confidence 688999999999999999999987654431 1223333332223333433221 110 0
Q ss_pred ------ccc-cccch-hhHHhHHHHHHHHhCCCCc--EEEEeCCCCCC------ChHHHHHHHHHHHHHHHHhcCceEEE
Q 040956 880 ------RIM-TGEST-FLVECTETASVLQKATQDS--LVILDELGRGT------STFDGYAIAYAVFRQLVERINCRLLF 943 (1085)
Q Consensus 880 ------~i~-~~~St-f~~Em~ela~iL~~at~~s--LvLLDEpgrGT------s~~Dg~aia~avle~L~~~~~~tiL~ 943 (1085)
.+. ...+. -..++....+-+....+.. +|++|=+..=. +.....+-...-|..++++.++++|+
T Consensus 276 ~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 355 (444)
T 3bgw_A 276 GEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 355 (444)
T ss_dssp HHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 000 00011 1122332223232234678 99999764211 11112222333456667778999999
Q ss_pred EEechh
Q 040956 944 ATHYHP 949 (1085)
Q Consensus 944 aTH~~e 949 (1085)
++|-..
T Consensus 356 lsql~r 361 (444)
T 3bgw_A 356 LSQLSR 361 (444)
T ss_dssp EEECCG
T ss_pred EecCCc
Confidence 999543
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.48 E-value=0.036 Score=59.30 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.-++|+||+|+||||++|.++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 206
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.46 E-value=0.0056 Score=64.08 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|++++|+||+|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999999999865
No 207
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.39 E-value=0.069 Score=71.56 Aligned_cols=122 Identities=17% Similarity=0.267 Sum_probs=67.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-ccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-LGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-iG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|++++|.||+|+|||||+.+++..+.... -..|+-.+...-.+ +..++|.. +++.-...+-..++.+..+-+..
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql---~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH---HHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 688999999999999999999987554321 12244444332222 24445532 22211111112233333333333
Q ss_pred CCCCcEEEEeCCCCCCChH-------------HHHHHHHHHHHH---HHHhcCceEEEEEechh
Q 040956 902 ATQDSLVILDELGRGTSTF-------------DGYAIAYAVFRQ---LVERINCRLLFATHYHP 949 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~-------------Dg~aia~avle~---L~~~~~~tiL~aTH~~e 949 (1085)
...+++|++|++..=.... ....++ .++.. ++++.++++|++.|-..
T Consensus 808 ~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis-~~Lr~Lk~lAke~gi~VIlinql~r 870 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS-QAMRKLAGNLKQSNTLLIFINQIRM 870 (1706)
T ss_dssp HTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHH-HHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred ccCCCEEEEechhhhccccccccccCccchhHHHHHHH-HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4679999999986544210 111222 23333 35567999999988543
No 208
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.38 E-value=0.0052 Score=68.74 Aligned_cols=23 Identities=43% Similarity=0.378 Sum_probs=20.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++++|||+||||||||||.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 48999999999999999999764
No 209
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.36 E-value=0.019 Score=66.79 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=44.8
Q ss_pred ccchhhHHhHHHHHHHHhC--CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 884 GESTFLVECTETASVLQKA--TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 884 ~~Stf~~Em~ela~iL~~a--t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
..|..+..+..+|.+|... .++.++|||||++|+|+.....+.. ++..+... +.++|++||+..+..
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~-~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNP-DLQFIVISLKNTMFE 401 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBT-TBEEEEECSCHHHHT
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcC-CCEEEEEECCHHHHH
Confidence 3455555566677776322 6889999999999999766544333 33333222 678999999976654
No 210
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.32 E-value=0.051 Score=61.73 Aligned_cols=127 Identities=20% Similarity=0.101 Sum_probs=62.9
Q ss_pred CCEEEE--EeCCCCCcchHHhhhhhHHHHh------h-ccccccccc--cccchHHHHHHHcCCccccccccchhhHHhH
Q 040956 825 PRTLLL--TGPNMGGKSTLLRATCLAVILA------Q-LGCFVPCEM--CVLSLADTIFTRLGATDRIMTGESTFLVECT 893 (1085)
Q Consensus 825 g~~~iI--tGpNgsGKSTLLR~i~~i~ila------q-iG~~VPa~~--a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ 893 (1085)
+..++| +||.|.|||||++.++...--. . .-.++.+.. ....++..++..+|.... ..+.+ ...-..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~~ 127 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ-VRGAP-ALDILK 127 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC-CTTCC-HHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCC-HHHHHH
Confidence 457888 9999999999999987532211 1 112444322 122345556666654211 01111 111123
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCh-HHHHHHHHHHHHHHHHh------cCceEEEEEechhHHHh
Q 040956 894 ETASVLQKATQDSLVILDELGRGTST-FDGYAIAYAVFRQLVER------INCRLLFATHYHPLTKE 953 (1085)
Q Consensus 894 ela~iL~~at~~sLvLLDEpgrGTs~-~Dg~aia~avle~L~~~------~~~tiL~aTH~~el~~~ 953 (1085)
.+...+.....+-+|+|||.-.-... .........++..+... .+..+|++|...++...
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~ 194 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSY 194 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHH
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHH
Confidence 34444543456789999997221000 00012233333333321 23457778877765543
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.32 E-value=0.0054 Score=68.08 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.|++++|+||||+|||||||+++++
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 3679999999999999999999763
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.30 E-value=0.03 Score=65.50 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=47.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccc---cccccccccchHHHHHH---HcCCccccccccchhhHHhHHHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGC---FVPCEMCVLSLADTIFT---RLGATDRIMTGESTFLVECTETASV 898 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~---~VPa~~a~i~~~d~I~t---rig~~D~i~~~~Stf~~Em~ela~i 898 (1085)
+.+++++|++|+||||++..++.. +++-|. .+.++..+...++.+-. +.|..-. ......-..++ +...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~--l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~-~~~~~~dp~~i--~~~a 174 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY--FQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF-GNPQEKDAIKL--AKEG 174 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE-CCTTCCCHHHH--HHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE-ecCCCCCHHHH--HHHH
Confidence 468999999999999999888753 344442 23344444444444332 2222110 00000001111 1223
Q ss_pred HHhC--CCCcEEEEeCCCCCCC
Q 040956 899 LQKA--TQDSLVILDELGRGTS 918 (1085)
Q Consensus 899 L~~a--t~~sLvLLDEpgrGTs 918 (1085)
+..+ ...++||+|.+|+...
T Consensus 175 l~~a~~~~~DvVIIDTaGrl~~ 196 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAGRHKE 196 (443)
T ss_dssp HHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHhCCCCEEEEECCCcccc
Confidence 3333 4589999999987654
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.19 E-value=0.0069 Score=61.21 Aligned_cols=25 Identities=32% Similarity=0.151 Sum_probs=22.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|+|++||||||+++.++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999774
No 214
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.18 E-value=0.0056 Score=66.65 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=27.7
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.+++++... +| ++|+||||+|||||+|.++..
T Consensus 63 ~~l~~~~~~~~----~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 63 SRFHEMGARIP----KG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHTTCCCC----CE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCC----Ce--EEEECCCcChHHHHHHHHHHH
Confidence 45667777765 34 899999999999999999874
No 215
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.17 E-value=0.0072 Score=67.15 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
.|++++|+||||+||||||++++
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999987
No 216
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.16 E-value=0.043 Score=62.52 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCC-CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhhcC
Q 040956 902 ATQ-DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEFAS 956 (1085)
Q Consensus 902 at~-~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~~~ 956 (1085)
+.+ +.++|||||+.|.|+.....+.. ++..+. . +.++|++||+.++ ..+++
T Consensus 302 ~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~-~~~vi~~th~~~~-~~~~d 353 (371)
T 3auy_A 302 IGNRVECIILDEPTVYLDENRRAKLAE-IFRKVK-S-IPQMIIITHHREL-EDVAD 353 (371)
T ss_dssp HSSCCSEEEEESTTTTCCHHHHHHHHH-HHHHCC-S-CSEEEEEESCGGG-GGGCS
T ss_pred hcCCCCeEEEeCCCCcCCHHHHHHHHH-HHHHhc-c-CCeEEEEEChHHH-HhhCC
Confidence 567 99999999999999766544333 233321 2 4589999999875 34444
No 217
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.12 E-value=0.0071 Score=68.94 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.|++++|+||||+||||||+.+++
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 468999999999999999999976
No 218
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.09 E-value=0.0083 Score=69.78 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.+.+++|+||||+||||+|++|+++.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 35799999999999999999998753
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.09 E-value=0.0072 Score=62.44 Aligned_cols=21 Identities=29% Similarity=0.164 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|||||||||+.+.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 220
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.05 E-value=0.0082 Score=61.85 Aligned_cols=21 Identities=33% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|+|||||||+.+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999976
No 221
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.96 E-value=0.011 Score=66.49 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+++|+||||||||||++.++.+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 222
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.94 E-value=0.0094 Score=62.30 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||+||||||+.+.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 223
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.91 E-value=0.0017 Score=69.50 Aligned_cols=23 Identities=39% Similarity=0.338 Sum_probs=21.2
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+++|+|||||||||||++|+++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999885
No 224
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.87 E-value=0.019 Score=65.10 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+|+||+|||||++.+++.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999998653
No 225
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.84 E-value=0.072 Score=59.94 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+..++|+||.|.||||+++.++..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999764
No 226
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.81 E-value=0.11 Score=70.61 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=69.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|++++|.||.|+|||||+.+++..+... ....|+-.+...-.. ...++|.. +++.-....-..++.+.+..+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~ 458 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDALAR 458 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999987654432 112344444322222 24556532 22211111122344444444434
Q ss_pred CCCCcEEEEeCCCCCCChH-------------HHHHHHHHHHHHH---HHhcCceEEEEEechhH
Q 040956 902 ATQDSLVILDELGRGTSTF-------------DGYAIAYAVFRQL---VERINCRLLFATHYHPL 950 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~-------------Dg~aia~avle~L---~~~~~~tiL~aTH~~el 950 (1085)
...+++|++|.+..=.... ....+ ...+..| +++.++++|++.|-...
T Consensus 459 ~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~i-s~~Lr~L~~lake~~i~VIlinQl~~~ 522 (2050)
T 3cmu_A 459 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQSNTLLIFINQIRMK 522 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHH-HHHHHHHHHHHHTTTCEEEEEECCEEC
T ss_pred hcCCcEEEECCHHHhhcccccccccccchhhHHHHHH-HHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 5689999999986544211 11122 2334444 56679999999986543
No 227
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.80 E-value=0.018 Score=61.42 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCC-EEEEEeCCCCCcchHHhhhhhHHHHhhcccccc---ccc-cccchHHHHHHHcCCcccc---ccccchhhHHhHHH
Q 040956 824 LPR-TLLLTGPNMGGKSTLLRATCLAVILAQLGCFVP---CEM-CVLSLADTIFTRLGATDRI---MTGESTFLVECTET 895 (1085)
Q Consensus 824 ~g~-~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VP---a~~-a~i~~~d~I~trig~~D~i---~~~~Stf~~Em~el 895 (1085)
+|+ .+++.|+-|.||||++-.++.. +++-|.-|- .+. ......+ ....+...... ..+. .+ .| ..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~--l~~~G~~V~v~d~D~q~~~~~~a-l~~gl~~~~~~~~~~~~~-~~-~e-~~l 77 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA--QLRQGVRVMAGVVETHGRAETEA-LLNGLPQQPLLRTEYRGM-TL-EE-MDL 77 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCTTCHHHHH-HHTTSCBCCCEEEEETTE-EE-EE-CCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH--HHHCCCCEEEEEeCCCCChhHHH-HhcCccccCcceeecCCc-cc-cc-ccH
Confidence 344 4789999999999997777653 334453221 111 1111111 11111110000 0000 00 11 123
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 896 ASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 896 a~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
..++. ..++++|+||++.-..+..+.++.++.+..+... +.-++.++|-.
T Consensus 78 ~~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s-gidVitT~Nlq 127 (228)
T 2r8r_A 78 DALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA-GIDVYTTVNVQ 127 (228)
T ss_dssp HHHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT-TCEEEEEEEGG
T ss_pred HHHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC-CCCEEEEcccc
Confidence 34442 4689999999986434433344455555656554 77788888743
No 228
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.79 E-value=0.011 Score=61.18 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++.+++|+|++||||||+++.++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999876
No 229
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.79 E-value=0.023 Score=70.04 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=61.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHH-Hhhccccccccc-cccchHHHHHHHc------------CCccccc--cccch
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVI-LAQLGCFVPCEM-CVLSLADTIFTRL------------GATDRIM--TGEST 887 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~i-laqiG~~VPa~~-a~i~~~d~I~tri------------g~~D~i~--~~~St 887 (1085)
+++.++|+|+||+|||||++.+....- ....|....... ..... ......+ +...++. .|...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~-~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTP-EAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSH-HHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCH-HHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 467899999999999999999875321 112221100000 00000 0000001 1111222 23444
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHH
Q 040956 888 FLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLT 951 (1085)
Q Consensus 888 f~~Em~ela~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~ 951 (1085)
|..++ ...++ ..+.-++++| +..|.+.... .++..+.. .+..+|++.|..++.
T Consensus 87 f~~~~---~~~l~-~ad~~ilVvD-~~~g~~~qt~-----~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEI---RGALE-AADAALVAVS-AEAGVQVGTE-----RAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHH---HHHHH-HCSEEEEEEE-TTTCSCHHHH-----HHHHHHHH-TTCCEEEEEECGGGC
T ss_pred hHHHH---HHHHh-hcCcEEEEEc-CCcccchhHH-----HHHHHHHH-ccCCEEEEecCCchh
Confidence 54443 33332 3567788899 8888775442 34444444 478888899988764
No 230
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.74 E-value=0.15 Score=68.30 Aligned_cols=123 Identities=19% Similarity=0.286 Sum_probs=69.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHh-hccccccccccccchHHHHHHHcCCc-ccccc-ccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILA-QLGCFVPCEMCVLSLADTIFTRLGAT-DRIMT-GESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ila-qiG~~VPa~~a~i~~~d~I~trig~~-D~i~~-~~Stf~~Em~ela~iL~ 900 (1085)
+|++++|.||.|+|||||.-+++...... .-..|+-.+...-.. ...++|.. +++.- ...+ ..++.++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~lv 457 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDALA 457 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH---HHHHcCCCHHHeEEcCCCC-HHHHHHHHHHHH
Confidence 68899999999999999999987654432 223355444332222 24556642 22221 1112 233444444333
Q ss_pred hCCCCcEEEEeCCCCCCChH--H----------HHHHHHHHHHHH---HHhcCceEEEEEechhH
Q 040956 901 KATQDSLVILDELGRGTSTF--D----------GYAIAYAVFRQL---VERINCRLLFATHYHPL 950 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~--D----------g~aia~avle~L---~~~~~~tiL~aTH~~el 950 (1085)
....+++|++|.+..=.... + ........+..| +++.++++|++.|-...
T Consensus 458 ~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~ 522 (1706)
T 3cmw_A 458 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 522 (1706)
T ss_dssp HHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEEC
T ss_pred HhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 34679999999986544211 0 111122233333 45669999999987543
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.66 E-value=0.0051 Score=68.71 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|++++|+||||+||||||+.+++.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4789999999999999999999764
No 232
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.064 Score=62.58 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..+-++|.||.|+|||++.|.+|.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 456799999999999999999976
No 233
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.092 Score=61.34 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+-++|.||.|+|||+|.|.+|.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999999999976
No 234
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.64 E-value=0.022 Score=68.51 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+|..++|+||||+|||||+|+++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999998754
No 235
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.62 E-value=0.015 Score=66.75 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred ccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHH
Q 040956 813 DILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVI 850 (1085)
Q Consensus 813 disL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~i 850 (1085)
|+.+.+. +|+.++|+||+|+|||||+++|+..+-
T Consensus 166 D~~~pi~----rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIG----RGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCB----TTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeec----CCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 7777776 789999999999999999999876543
No 236
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.62 E-value=0.012 Score=59.96 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++|+|+||+|||||++.+++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998763
No 237
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.58 E-value=0.094 Score=55.71 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..++|+||.|+||||+.+.++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999976
No 238
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.45 E-value=0.013 Score=60.67 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+++|+||+||||||+.+.++.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999999865
No 239
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.39 E-value=0.085 Score=55.39 Aligned_cols=28 Identities=29% Similarity=0.172 Sum_probs=23.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL 851 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il 851 (1085)
+|.+++|.|+.|+|||||.-+++.....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~ 56 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988764433
No 240
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.38 E-value=0.077 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.-++|+||.|+|||++.|.++.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999999965
No 241
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.38 E-value=0.015 Score=59.60 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++|+|+||+|||||++.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 242
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.34 E-value=0.093 Score=58.30 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+||.|+||||+++.++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999999855
No 243
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.33 E-value=0.09 Score=59.50 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
...++|+||.|+||||+.|.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999975
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.25 E-value=0.019 Score=58.44 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++..++|+|+.||||||+.+.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998865
No 245
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.075 Score=61.92 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..+-++|.||.|+|||++.|.+|.-
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999863
No 246
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.21 E-value=0.082 Score=59.23 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.4
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+||.|+||||+++.++..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 247
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.18 E-value=0.17 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++|+||.|+||||+++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.12 E-value=0.016 Score=59.65 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..+++|+|++||||||+.+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998763
No 249
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.09 E-value=0.012 Score=60.01 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.0
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++++|+|+||||||||++.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 250
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.069 Score=61.65 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+-++|.||.|+|||+|.|.+|.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 34589999999999999999976
No 251
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.02 E-value=0.069 Score=59.18 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+.+++++|+||+||||++..++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998743
No 252
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.98 E-value=0.25 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.|.+++|.||+||||||+++.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999763
No 253
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.97 E-value=0.015 Score=70.00 Aligned_cols=25 Identities=40% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|+|+|||||||++|+++..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 5789999999999999999999875
No 254
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.89 E-value=0.023 Score=64.80 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.+|+||||+||||+|-.|+.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999864
No 255
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.86 E-value=0.072 Score=59.21 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCcchHHhhhhhHH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.++|+||+|+||||+++.++...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998754
No 256
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.76 E-value=0.1 Score=58.26 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++.++|.||.|+|||++.|.++.-
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999763
No 257
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.73 E-value=0.22 Score=54.38 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+..++|+||.|+||||+.+.++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999997643
No 258
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.68 E-value=0.013 Score=70.00 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=25.6
Q ss_pred cccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 812 NDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 812 ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+++|... +| +.+|+|+||+||||||.+|.++
T Consensus 52 ~~~~l~f~----~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 52 TQLELELG----GG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SCEEEECC----CS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeEEEecC----CC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 35555554 34 9999999999999999999765
No 259
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.68 E-value=0.2 Score=58.39 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+.+++|+|+||+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998743
No 260
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.66 E-value=0.021 Score=57.66 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.|.+++|+|++||||||+.+.++-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 261
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.61 E-value=0.25 Score=52.85 Aligned_cols=106 Identities=18% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc--cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
.|.+.+++||=|+||||.|-..+.-...+..-. +-|+...+.+ +.|.+++|..-... +.+.. .+ ++..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~~~ 87 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VAQE 87 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEE-EESSG-GG------GHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEEE-ecCCH-HH------HHHH
Confidence 467999999999999988766655444443222 2345444444 56788877532111 11111 12 2222
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 902 ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
+.+-++|++||.-=-++ ...+++.+.+ .|..+|++.++
T Consensus 88 ~~~~dvViIDEaQF~~~-------v~el~~~l~~-~gi~VI~~GL~ 125 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD-------IVEFCEAMAN-AGKTVIVAALD 125 (234)
T ss_dssp HTTCSEEEESSGGGCTT-------HHHHHHHHHH-TTCEEEEECCS
T ss_pred hccCCEEEEEchhhhhh-------HHHHHHHHHh-CCCEEEEEecc
Confidence 36679999999532222 3445565555 48899999999
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.61 E-value=0.11 Score=65.72 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=50.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHhhcccccccc--ccccchHH--HHHHHcCCccccccccchhhHHhHHHHHHHHh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCE--MCVLSLAD--TIFTRLGATDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~--~a~i~~~d--~I~trig~~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
..++|+||+|+||||+++.++....-. .+|.. ...+-.++ .+.. |. .....|...+..+-..+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~----~~p~~l~~~~~~~l~~~~l~~--g~-----~~~g~~~~~l~~~~~~~~~ 260 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKG----DVPEGLKGKRIVSLQMGSLLA--GA-----KYRGEFEERLKAVIQEVVQ 260 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHT----CSCTTSTTCEEEEECC------------------CHHHHHHHHHHHHHT
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcC----CCchhhcCCeEEEeehHHhhc--cC-----ccchHHHHHHHHHHHHHHh
Confidence 357999999999999999998753221 12211 01000000 0100 00 0011222223333333322
Q ss_pred CCCCcEEEEeCCCCCC--ChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 902 ATQDSLVILDELGRGT--STFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 902 at~~sLvLLDEpgrGT--s~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
...+.+|+|||.-.=. ....+..-+..++..+....+..+|.+|...+.
T Consensus 261 ~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 261 SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY 311 (854)
T ss_dssp TCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 3467899999984321 111111112334555556556778888877655
No 263
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.1 Score=61.28 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..+-++|.||.|+|||+|.|.+|.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh
Confidence 456799999999999999999986
No 264
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.1 Score=60.68 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+-++|.||.|+|||+|.|.+|.-
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 456999999999999999999863
No 265
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.54 E-value=0.13 Score=61.10 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+||.|+|||++.|.++.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999999965
No 266
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.51 E-value=0.12 Score=57.53 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
...++|+||.|+|||++.|.++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999763
No 267
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.46 E-value=0.028 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|+|++|+||||+.+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999764
No 268
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.41 E-value=0.2 Score=55.16 Aligned_cols=22 Identities=45% Similarity=0.371 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+||-|.|||||++.++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 5899999999999999999854
No 269
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.36 E-value=0.043 Score=58.06 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|++|+|||||++.+.+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999865
No 270
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.35 E-value=0.28 Score=66.66 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhh-ccccccccccccchHHHHHHHcCCc-cccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQ-LGCFVPCEMCVLSLADTIFTRLGAT-DRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaq-iG~~VPa~~a~i~~~d~I~trig~~-D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|++++|.|++|+|||||+.+++..+.... -..|+-.+...-.+. ..++|.. +++.-...+-..++.+.++.+..
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~---A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHH---HHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 678999999999999999999987654431 123554443322222 3456632 22222211223344445444443
Q ss_pred CCCCcEEEEeCCCCCCC-----------hH--HHHHHH--HHHHHHHHHhcCceEEEEEechhH
Q 040956 902 ATQDSLVILDELGRGTS-----------TF--DGYAIA--YAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 902 at~~sLvLLDEpgrGTs-----------~~--Dg~aia--~avle~L~~~~~~tiL~aTH~~el 950 (1085)
-..++||++|.+..=.. .. ....++ ..-|..+++..++.+|++.|-..-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~ 871 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 871 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccccc
Confidence 46789999999542221 11 001122 224556677789999999996543
No 271
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.34 E-value=0.046 Score=68.80 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
++..++|+||+|+|||||.|.++...
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHh
Confidence 46679999999999999999998753
No 272
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.29 E-value=0.028 Score=63.45 Aligned_cols=36 Identities=28% Similarity=0.195 Sum_probs=29.0
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.+++++... ++.+++|+|+||+|||||++.++..
T Consensus 44 ~~~~~l~~~~~----~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCG----NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCS----CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccC----CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45556666554 5789999999999999999999764
No 273
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.24 E-value=0.16 Score=57.46 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.3
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.-++|+||.|+|||++.|.++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999764
No 274
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.23 E-value=0.15 Score=59.84 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.4
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+||.|+||||+.+.++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999763
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.19 E-value=0.033 Score=55.14 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+||.||||||+.+.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 276
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.08 E-value=0.08 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
...++|+||.|+||||+.+.++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999764
No 277
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.98 E-value=0.11 Score=58.69 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=24.6
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++.++++... .++|+|++|+||||||+.+.+.
T Consensus 25 ~~l~~i~~~lp-------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP-------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC-------EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC-------EEEEECCCCCcHHHHHHHHhCC
Confidence 45667777764 7999999999999999999774
No 278
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.96 E-value=0.041 Score=58.28 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++.+++|+|++||||||+.+.++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999998865
No 279
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.87 E-value=0.3 Score=53.58 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+||.|+||||+++.++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.86 E-value=0.041 Score=55.04 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+|+.||||||+.|.++-
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 281
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.79 E-value=0.04 Score=55.13 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++..++|+|++|+|||||++.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999865
No 282
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=92.78 E-value=0.1 Score=59.51 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=39.9
Q ss_pred ccchhhHHhHHHHHHHHh-------CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 884 GESTFLVECTETASVLQK-------ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 884 ~~Stf~~Em~ela~iL~~-------at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
..|..+.....+|.+|.. ..+|.++|||||++|+|+..... +++.+.+. +.++|++||.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~----l~~~l~~~-~qt~i~~th~ 330 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQY----LLDLAASV-PQAIVTGTEL 330 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHH----HHHHHHHS-SEEEEEESSC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHH----HHHHHHhc-CcEEEEEEec
Confidence 456666666667776621 17899999999999999766443 33433332 4688889994
No 283
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.77 E-value=0.26 Score=56.25 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..++|+||.|+|||++.+.++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999965
No 284
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.68 E-value=0.045 Score=63.12 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.|..++|+|+||+|||||++++.+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999873
No 285
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.63 E-value=0.095 Score=62.41 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.6
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+||.|+||||+++.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998763
No 286
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.62 E-value=0.16 Score=54.43 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+||.|+|||++.|.++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999975
No 287
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.57 E-value=0.044 Score=56.96 Aligned_cols=25 Identities=36% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.|.+++|+|++|+||||+.+.++..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999763
No 288
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.52 E-value=0.15 Score=53.93 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=57.0
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccc--cccccccchHHHHHHHcCCccccccccc
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV--PCEMCVLSLADTIFTRLGATDRIMTGES 886 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~V--Pa~~a~i~~~d~I~trig~~D~i~~~~S 886 (1085)
.||..-.+... ..+|.+.+++||=|+||||.|-.++.-..-+..-.++ |+...+.+ ...|.+++|..-... ..+
T Consensus 14 ~~~~~~~~~~~--~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a~-~~~ 89 (214)
T 2j9r_A 14 LVPRGSHMYLI--NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKAV-PVS 89 (214)
T ss_dssp -----CCCCCC--CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEE-ECS
T ss_pred cccCCcccccc--CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEEe-ecC
Confidence 45554444321 1257899999999999999988876655444333232 33322211 124666665431110 111
Q ss_pred hhhHHhHHHHHHHHhCC-CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEec
Q 040956 887 TFLVECTETASVLQKAT-QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHY 947 (1085)
Q Consensus 887 tf~~Em~ela~iL~~at-~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~ 947 (1085)
.. ..++..+. +.++|++||.-- ++. .+. .++..+... +..+|++-++
T Consensus 90 ~~-------~~~~~~~~~~~dvViIDEaQF----~~~-~~V-~~l~~l~~~-~~~Vi~~Gl~ 137 (214)
T 2j9r_A 90 AS-------KDIFKHITEEMDVIAIDEVQF----FDG-DIV-EVVQVLANR-GYRVIVAGLD 137 (214)
T ss_dssp SG-------GGGGGGCCSSCCEEEECCGGG----SCT-THH-HHHHHHHHT-TCEEEEEECS
T ss_pred CH-------HHHHHHHhcCCCEEEEECccc----CCH-HHH-HHHHHHhhC-CCEEEEEecc
Confidence 11 12232233 478999999622 211 122 456666665 8899999994
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.51 E-value=0.052 Score=59.97 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
++.+++|+||+|||||||.+.++...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999987643
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.50 E-value=0.049 Score=54.88 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||.||||||+.+.++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 291
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.29 E-value=0.11 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.-++|+||.|+|||++.|.++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999865
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.26 E-value=0.054 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+++|+|+.||||||+.+.++-
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 293
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.21 E-value=0.053 Score=61.38 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.+++|+|++|+||||||+.+++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 294
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.17 E-value=0.053 Score=56.43 Aligned_cols=23 Identities=35% Similarity=0.219 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+|++||||||+.+.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 295
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.16 E-value=0.27 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+||.|+|||++.|.++.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 4589999999999999999875
No 296
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.11 E-value=0.19 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|.||.|+||||+..+++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999887653
No 297
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.02 E-value=0.33 Score=60.78 Aligned_cols=106 Identities=23% Similarity=0.339 Sum_probs=55.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCccccccccchhhHHh-HHHHHHHHhC-
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVEC-TETASVLQKA- 902 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em-~ela~iL~~a- 902 (1085)
.+-++|.||.|+|||+|.|.+|. ..|+.+ ..+...+ +. |.+..+- ..+..++..|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~-----elg~~~----~~v~~~~-l~-------------sk~~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVAN-----ETGAFF----FLINGPE-IM-------------SKLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHT-----TTTCEE----EEEEHHH-HH-------------SSCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH-----HhCCeE----EEEEhHH-hh-------------cccchHHHHHHHHHHHHHH
Confidence 35689999999999999999875 234322 1111111 11 1111221 2233344433
Q ss_pred -CCCcEEEEeCCC-----CCCC-hHHHHHHHHHHHHHHH---HhcCceEEEEEechhHHHh
Q 040956 903 -TQDSLVILDELG-----RGTS-TFDGYAIAYAVFRQLV---ERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 903 -t~~sLvLLDEpg-----rGTs-~~Dg~aia~avle~L~---~~~~~tiL~aTH~~el~~~ 953 (1085)
..|++|+|||+- |+.+ ......+...++..+- ...+..+|.+|...+.++.
T Consensus 295 ~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 579999999952 1111 1111223333333322 2335567788888776543
No 298
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.97 E-value=0.17 Score=52.42 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccccc--cccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFV--PCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQK 901 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~V--Pa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~ 901 (1085)
+|.+.+++||-|+||||.+-.++.-..-+..-..+ |....+.+ ...+.+++|..-. ....+.. ..++..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~-a~~~~~~-------~~i~~~ 77 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNS-------REILKY 77 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSS-------THHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCcee-eEeeCCH-------HHHHHH
Confidence 57899999999999999887775544333222122 22111111 0112333332110 0011111 133433
Q ss_pred CC-CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 902 AT-QDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 902 at-~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
+. +.++|++||.-- .++. + ...++.+... +..+|++.++.
T Consensus 78 ~~~~~dvViIDEaqf-l~~~----~-v~~l~~l~~~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 78 FEEDTEVIAIDEVQF-FDDE----I-VEIVNKIAES-GRRVICAGLDM 118 (191)
T ss_dssp CCTTCSEEEECSGGG-SCTH----H-HHHHHHHHHT-TCEEEEEECSB
T ss_pred HhccCCEEEEECCCC-CCHH----H-HHHHHHHHhC-CCEEEEEeccc
Confidence 43 469999999532 2211 1 2356666665 88999998854
No 299
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.96 E-value=0.12 Score=60.54 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
...++|+||.|+|||++.+.++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.85 E-value=0.06 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+++|+|++||||||+.+.++-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999865
No 301
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.78 E-value=0.059 Score=53.26 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|++|+|||||++.+.+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999865
No 302
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.74 E-value=0.057 Score=54.18 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+||+||||||+.+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 303
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.72 E-value=0.05 Score=58.46 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+++|+||+||||||+.+.++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999865
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.72 E-value=0.062 Score=52.82 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCcchHHhhh
Q 040956 827 TLLLTGPNMGGKSTLLRAT 845 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i 845 (1085)
+++|+||.||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999987
No 305
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.64 E-value=0.17 Score=59.47 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL 851 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il 851 (1085)
+|..++|.||+|.|||||++.++...-.
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 5778999999999999999999765443
No 306
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.61 E-value=0.068 Score=53.60 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=16.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++.+++|+|+.||||||+.+.++-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998853
No 307
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.56 E-value=0.21 Score=54.64 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++|+||.|+||||+.+.++..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.55 E-value=0.068 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..++|+|+.|+||||+.+.++-
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 309
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.47 E-value=0.29 Score=58.64 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=65.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh---HHHHhh--cccccccccc----ccchHHHHHHHcCCccc--cccccchh-hHH-
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL---AVILAQ--LGCFVPCEMC----VLSLADTIFTRLGATDR--IMTGESTF-LVE- 891 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~---i~ilaq--iG~~VPa~~a----~i~~~d~I~trig~~D~--i~~~~Stf-~~E- 891 (1085)
..++.|+|+-|.|||||.+.++- ..+-.+ ..++|..... ...+...|+..++.... ........ ...
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 46899999999999999998873 112222 2234433221 23455567777775432 11111111 011
Q ss_pred hHHHHHHHHhCCC-CcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHhh
Q 040956 892 CTETASVLQKATQ-DSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKEF 954 (1085)
Q Consensus 892 m~ela~iL~~at~-~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~~ 954 (1085)
...+...| ... +-|||||-. .+... . .+ ....|+.+|++|.+...+..+
T Consensus 232 ~~~l~~~L--~~~kr~LlVLDdv---~~~~~-~--~~------~~~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 232 KRMICNAL--IDRPNTLFVFDDV---VQEET-I--RW------AQELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHHHHH--TTSTTEEEEEEEE---CCHHH-H--HH------HHHTTCEEEEEESBGGGGGGC
T ss_pred HHHHHHHH--cCCCcEEEEEECC---CCchh-h--cc------cccCCCEEEEEcCCHHHHHHc
Confidence 12233334 454 899999998 44221 1 11 122589999999998776644
No 310
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.44 E-value=0.38 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++..++|+||.|+||||+.|.++..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999764
No 311
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.44 E-value=0.071 Score=58.68 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+++|+||+||||||+.+.++-
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998854
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.43 E-value=0.069 Score=57.56 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+||+||||||+-+.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999865
No 313
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.39 E-value=0.21 Score=52.10 Aligned_cols=107 Identities=17% Similarity=0.075 Sum_probs=56.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhccc--cccccccccchHHHHHHHcCCc--cccccccchhhHHhHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLGC--FVPCEMCVLSLADTIFTRLGAT--DRIMTGESTFLVECTETASVL 899 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~--~VPa~~a~i~~~d~I~trig~~--D~i~~~~Stf~~Em~ela~iL 899 (1085)
.|++..|+||-|+||||.|-+.......+..-. +-|+-..+.+ +.|.+++|.. .........|..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~--------- 87 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQ--------- 87 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGGGHH---------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHHHHH---------
Confidence 467999999999999955444444444443222 2244222222 2244444321 001111222221
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhH
Q 040956 900 QKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPL 950 (1085)
Q Consensus 900 ~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el 950 (1085)
...+-++|++||.== . .+ ...+++.|.+ .|..+|++.++.++
T Consensus 88 -~~~~~DvIlIDEaQF-f--k~----~ve~~~~L~~-~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 88 -EALGVAVIGIDEGQF-F--PD----IVEFCEAMAN-AGKTVIVAALDGTF 129 (195)
T ss_dssp -HHHTCSEEEESSGGG-C--TT----HHHHHHHHHH-TTCEEEEEEESBCT
T ss_pred -hccCCCEEEEEchhh-h--HH----HHHHHHHHHH-CCCeEEEEeccccc
Confidence 123468999999400 1 11 2234566765 48899999998754
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.32 E-value=0.065 Score=55.40 Aligned_cols=21 Identities=43% Similarity=0.744 Sum_probs=18.4
Q ss_pred CEEEEEeCCCCCcchHHhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~ 846 (1085)
+.++|+||+|+|||||++.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999863
No 315
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.21 E-value=0.077 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+|++|+|||||++.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999865
No 316
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.12 E-value=0.085 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+++|+||+|+|||||++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 47999999999999999998654
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.10 E-value=0.091 Score=53.20 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.2
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++.+++|+|+.||||||+.+.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 318
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.10 E-value=0.48 Score=52.94 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=57.6
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHHHHhhccccccccccccchHHHHHHHcCCcccc-ccc---cchh-hHHhHHHHHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDRI-MTG---ESTF-LVECTETASVL 899 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa~~a~i~~~d~I~trig~~D~i-~~~---~Stf-~~Em~ela~iL 899 (1085)
+..++++||.|.||||+.+.++....-.......||..+.. ...+... ...|-. ..+ .+.. ..++.++...+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~--c~~~~~~-~~~d~~~~~~~~~~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG--CQLMQAG-THPDYYTLAPEKGKNTLGVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHH--HHHHHHT-CCTTEEEECCCTTCSSBCHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHH--HHHHhcC-CCCCEEEEeccccCCCCCHHHHHHHHHHH
Confidence 34699999999999999999876433221111234433221 1112211 111111 111 1111 12233332222
Q ss_pred Hh---CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh-cCceEEEEEechh
Q 040956 900 QK---ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHP 949 (1085)
Q Consensus 900 ~~---at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~-~~~tiL~aTH~~e 949 (1085)
.. ..+..++|+||.-+=+. ..+.+++..+-+. .++.+|++|++.+
T Consensus 101 ~~~~~~~~~kvviIdead~l~~-----~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD-----AAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH-----HHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred hhccccCCcEEEEECchhhcCH-----HHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 11 13578999999743322 1244566655332 1356778888864
No 319
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.10 E-value=0.09 Score=53.69 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 320
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.06 E-value=0.18 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..+++.||.|.||||+.+.++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHHH
Confidence 45788899999999999999865
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.02 E-value=0.082 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998754
No 322
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.00 E-value=0.092 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..+++|+|+.||||||+.+.++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999865
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.98 E-value=0.082 Score=53.76 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|+.||||||+.+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999865
No 324
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.93 E-value=0.089 Score=62.53 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=26.4
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.+.+++.+... + -++|+||||+|||||+|.++..
T Consensus 54 ~~~~~lg~~ip----~--GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 54 SRFHEMGARIP----K--GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp GGTTTTSCCCC----S--EEEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhhccCCCC----c--eEEEECCCCCCHHHHHHHHHHH
Confidence 34556666554 2 3899999999999999999874
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.88 E-value=0.099 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.|.+++|+|+.||||||+.+.++-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 326
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.86 E-value=0.28 Score=57.22 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+.+++|+|++|+||||+...++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999987643
No 327
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.77 E-value=0.092 Score=53.73 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
|.+++|+|+.||||||+.+.++-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999865
No 328
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.71 E-value=0.043 Score=61.41 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEeCCCCCcchHHhhhhhHH
Q 040956 828 LLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 828 ~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
++|+||+|+||||+++.++...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998753
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.58 E-value=0.11 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+++|+|+.||||||+.+.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999865
No 330
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.40 E-value=0.17 Score=53.51 Aligned_cols=109 Identities=21% Similarity=0.190 Sum_probs=53.9
Q ss_pred CCCEEEEEeCCCCCcch-HHhhhhhHHHHhhccc--cccccccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHH
Q 040956 824 LPRTLLLTGPNMGGKST-LLRATCLAVILAQLGC--FVPCEMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQ 900 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKST-LLR~i~~i~ilaqiG~--~VPa~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~ 900 (1085)
.|.+.+||||-++|||| ||+.+-- ...+..-+ +-|+...+.+ ...|.+|+|..-.... .+. ..++.+ .+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r-~~~~g~kvli~kp~~D~R~~-~~~I~Sr~G~~~~a~~-v~~-~~di~~---~i- 98 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRR-GIYAKQKVVVFKPAIDDRYH-KEKVVSHNGNAIEAIN-ISK-ASEIMT---HD- 98 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHH-HHHTTCCEEEEEEC------------CBTTBCCEEEE-ESS-GGGGGG---SC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH-HHHcCCceEEEEeccCCcch-hhhHHHhcCCceeeEE-eCC-HHHHHH---HH-
Confidence 57899999999999999 7777532 22232222 2344332221 2346677774322110 000 011111 11
Q ss_pred hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEech
Q 040956 901 KATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYH 948 (1085)
Q Consensus 901 ~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~ 948 (1085)
..+.++|++||.= .++. .+. ..+..++. .|..+|++-=+.
T Consensus 99 -~~~~dvV~IDEaQ----Ff~~-~~v-~~l~~la~-~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 99 -LTNVDVIGIDEVQ----FFDD-EIV-SIVEKLSA-DGHRVIVAGLDM 138 (219)
T ss_dssp -CTTCSEEEECCGG----GSCT-HHH-HHHHHHHH-TTCEEEEEEESB
T ss_pred -hcCCCEEEEechh----cCCH-HHH-HHHHHHHH-CCCEEEEeeccc
Confidence 3578899999941 1111 122 34556665 488888886655
No 331
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.37 E-value=0.11 Score=52.26 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..++|+||.||||||+.+.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 332
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.35 E-value=0.093 Score=52.80 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999876
No 333
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.00 E-value=0.12 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+-+++|+||+||||||+.+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999864
No 334
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.99 E-value=0.12 Score=52.47 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.94 E-value=0.12 Score=51.95 Aligned_cols=21 Identities=33% Similarity=0.194 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|+.|+||||+.+.++-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 336
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.83 E-value=0.067 Score=55.11 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|.|+.||||||+++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 337
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.83 E-value=0.094 Score=59.58 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.5
Q ss_pred cccccccCCCCCCCCCCE--EEEEeCCCCCcchHHhhhhhHH
Q 040956 810 VPNDILLGEDSDDCLPRT--LLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~--~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+...+++.+. .|+. ++|+||+|+||||+.|.++...
T Consensus 11 il~~l~~~i~----~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIE----DNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTT----TCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----cCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4445555444 3444 9999999999999999997643
No 338
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.81 E-value=0.096 Score=57.93 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.+++|+|++|+|||||++.+.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 348999999999999999999763
No 339
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.75 E-value=0.12 Score=52.75 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|++||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 340
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.64 E-value=0.14 Score=51.89 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=19.7
Q ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh
Q 040956 810 VPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 810 V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++++... .-.++|+|++|+|||||++.+..
T Consensus 13 ~l~~~~~~~~-----~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNK-----HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCC-----ccEEEEECCCCCCHHHHHHHHhc
Confidence 4466776653 34789999999999999998864
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.42 E-value=0.15 Score=51.75 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+|+.||||||+.+.++-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 342
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.33 E-value=0.42 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+||.|+||||+.|.++..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999763
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.24 E-value=0.15 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.2
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+|+.||||||+.+.++-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
No 344
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.15 E-value=0.16 Score=53.28 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++.+++|+|+.||||||+.+.++-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 345
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.09 E-value=0.51 Score=52.76 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=60.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHH-hhcc-------ccccccc--cccchHHHHHHHcCCccccccccchhhHHhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVIL-AQLG-------CFVPCEM--CVLSLADTIFTRLGATDRIMTGESTFLVECT 893 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~il-aqiG-------~~VPa~~--a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ 893 (1085)
.+..+.|+||.|.|||++.|.++.-.-- +.-+ .+|-|.. ..-..+..|+..+... ....+.+ +.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~-~~~~~~~-----~~ 117 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE-NLCGDIS-----LE 117 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-C--CCCC-----HH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-CCCchHH-----HH
Confidence 3567999999999999999999764321 1111 1122211 1122455566665322 1111111 22
Q ss_pred HHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh-cCceEEEEEechhHHH
Q 040956 894 ETASVLQKA----TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHPLTK 952 (1085)
Q Consensus 894 ela~iL~~a----t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~-~~~tiL~aTH~~el~~ 952 (1085)
.+..++..+ ..+-+|+|||.-+=. ...+.+.+++..... .+..+|.++...++..
T Consensus 118 ~L~~~f~~~~~~~~~~~ii~lDE~d~l~----~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 118 ALNFYITNVPKAKKRKTLILIQNPENLL----SEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCGGGSCEEEEEEECCSSSC----CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHHhhhccCCceEEEEecHHHhh----cchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 344444432 456799999985433 123344444421111 1345667787776543
No 346
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.91 E-value=0.17 Score=61.14 Aligned_cols=24 Identities=38% Similarity=0.338 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+.+++|+||+|+||||+++.++..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999988653
No 347
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.87 E-value=0.54 Score=49.88 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+++|.|+.|+||||+.+.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999875
No 348
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.77 E-value=0.16 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=17.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||.||||||+.+.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 349
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.75 E-value=0.18 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.71 E-value=0.16 Score=52.50 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.65 E-value=0.15 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|+.||||||+.+.++-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 352
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.64 E-value=0.56 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+|.+++|.|+.|+||||+++.++..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998653
No 353
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.61 E-value=0.17 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.57 E-value=0.17 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
...+++|+|+.||||||+.+.++-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998864
No 355
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.50 E-value=0.32 Score=57.12 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
..++|+||+|+||||+.+.++...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999998753
No 356
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.45 E-value=0.17 Score=50.88 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.44 E-value=0.21 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+++|+|+.||||||+.+.++-
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.33 E-value=0.18 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.8
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+|+.||||||+.+.++-
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 359
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.14 E-value=0.17 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=19.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+++|+|+.||||||+-+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 360
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.09 E-value=0.19 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998853
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.92 E-value=0.19 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 362
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.76 E-value=0.15 Score=52.07 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=26.6
Q ss_pred ccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh
Q 040956 809 PVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 809 ~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+++++... .-.++|+|++|+|||||++.+..
T Consensus 14 ~~l~~~~~~~~-----~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKK-----TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTC-----CEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCC-----CcEEEEECCCCCCHHHHHHHHhc
Confidence 45667777653 34689999999999999999864
No 363
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.70 E-value=0.74 Score=50.05 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.4
Q ss_pred EEEEeCCCCCcchHHhhhhhH
Q 040956 828 LLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 828 ~iItGpNgsGKSTLLR~i~~i 848 (1085)
++|+||.|.||||+.+.++..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 364
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.63 E-value=1.3 Score=53.01 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=59.5
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH-H-Hhhc--c-ccccccccc----cchHHHHHHHcCCccccc-cccchhhHHhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV-I-LAQL--G-CFVPCEMCV----LSLADTIFTRLGATDRIM-TGESTFLVECTE 894 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~-i-laqi--G-~~VPa~~a~----i~~~d~I~trig~~D~i~-~~~Stf~~Em~e 894 (1085)
.++++|+||-|.|||||.+.++.-. + -.+. | .++...... +..+..+...++...... ........-...
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence 5689999999999999999885421 1 1111 1 123222111 111122233444211110 111111111223
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 895 TASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 895 la~iL~~at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
+...+.....+-||+||.. -+.. .++.+ ..++.+|++|.+...+..
T Consensus 227 l~~~l~~~~~~~LLVLDdv---~~~~--------~l~~l--~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDV---WDSW--------VLKAF--DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEE---CCHH--------HHHTT--CSSCEEEEEESCGGGGTT
T ss_pred HHHHHccCCCCeEEEEeCC---CCHH--------HHHHh--cCCCeEEEECCCcHHHHh
Confidence 4445544346899999998 2311 23333 247899999988776543
No 365
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.53 E-value=0.068 Score=60.81 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=29.0
Q ss_pred EEEEEcceeeeeecCCCCcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh
Q 040956 790 VLKIKGLWHPFALGENGGLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 790 ~l~ik~lrhp~~~~~~~~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+.++...+ +...+.+++.|. ++|+|++|+|||||++.+.+
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~----------I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFT----------LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEEC----------EEECCCTTSCHHHHHHHHTT
T ss_pred eEEeccchHHh-----CCeeecCCCCEE----------EEEEcCCCCCHHHHHHHHhC
Confidence 56777665544 244566676663 69999999999999999744
No 366
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.20 E-value=0.26 Score=56.25 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=20.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
..++|+||+|+||||+++.++...
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987654
No 367
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.09 E-value=0.27 Score=50.29 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+.+|+||.|+||||++..++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999865544
No 368
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.06 E-value=0.23 Score=52.12 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.01 E-value=0.25 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+++|+|++|+|||||+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988765
No 370
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.87 E-value=0.46 Score=59.08 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
+..++|+||.|+||||+.+.++...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998743
No 371
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.68 E-value=1.4 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..+++|+|++|+||||++..++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 372
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.66 E-value=0.26 Score=48.79 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++++|+|+-||||||+.+.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 373
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.66 E-value=0.34 Score=60.67 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+-++|.||.|+|||.+.|.++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEecCCCCCchHHHHHHHH
Confidence 34589999999999999999876
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.52 E-value=0.26 Score=52.50 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++..++|+||.||||||+.+.++-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 375
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=86.40 E-value=0.62 Score=56.02 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=20.6
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
..++|.|..|||||++|+.+..-.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999986543
No 376
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.95 E-value=0.42 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+.+++|+|++||||||+.+.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998754
No 377
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.93 E-value=0.35 Score=61.10 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcchHHhhhhhHH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.++|+||+|+|||++.|.++...
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 378
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.90 E-value=0.32 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.224 Sum_probs=20.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
..+++|+|+.||||||+.+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999987
No 379
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.81 E-value=0.31 Score=50.56 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998865
No 380
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.79 E-value=0.29 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.2
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+|++|+|||||++.+.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998653
No 381
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.74 E-value=0.3 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.107 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+++|||+-||||||+.+.++-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 382
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.72 E-value=0.29 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+++|+|++||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 383
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=85.71 E-value=0.27 Score=56.03 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++|+|++|+||||||+.+.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999998763
No 384
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=85.67 E-value=0.28 Score=57.03 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++|+|+||+|||||++.+.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998663
No 385
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.53 E-value=0.39 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999865
No 386
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.51 E-value=0.53 Score=55.03 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhH
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
++.-++|.||.|+|||++.+.++..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3457999999999999999998764
No 387
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.40 E-value=0.31 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..+++|+|+.||||||+.+.++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998754
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.03 E-value=0.36 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++..++|+|+.||||||+.+.++-
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999865
No 389
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.89 E-value=0.33 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.9
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.-.++|+|++|+|||||++.+..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998853
No 390
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.67 E-value=0.37 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+++|.|+.|+||||+++.++-
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 477999999999999999999865
No 391
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.49 E-value=0.4 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999864
No 392
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=84.48 E-value=0.42 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998864
No 393
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.42 E-value=0.39 Score=48.12 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|++|+|||||++.+..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 394
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=84.31 E-value=1 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+..++|+||.|+||||+++.+...
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999877543
No 395
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.12 E-value=0.41 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=18.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+++|.||.|+||||+++.++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999865
No 396
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.03 E-value=0.48 Score=46.55 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
...++|+|+.|+|||||++.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999998854
No 397
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.99 E-value=0.44 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 398
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.65 E-value=0.43 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=19.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~ 846 (1085)
|..++|+||.|+|||||...++
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999986653
No 399
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=83.59 E-value=0.45 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
|.+++|.|+-|+||||+.+.++-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999998865
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.35 E-value=0.49 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.6
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..++|+|+.|+||||+.+.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999865
No 401
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=83.34 E-value=0.46 Score=46.10 Aligned_cols=21 Identities=38% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 402
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.30 E-value=0.45 Score=46.07 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998854
No 403
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.25 E-value=3.4 Score=53.21 Aligned_cols=115 Identities=16% Similarity=0.343 Sum_probs=59.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH-HHHhhc--cc-ccccccc-c-cchHHHHHHH---cCC--ccccccccchhhHHh-
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA-VILAQL--GC-FVPCEMC-V-LSLADTIFTR---LGA--TDRIMTGESTFLVEC- 892 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i-~ilaqi--G~-~VPa~~a-~-i~~~d~I~tr---ig~--~D~i~~~~Stf~~Em- 892 (1085)
.++++|+||-|.|||||.+.++.- .+..+. |+ +|..... . ..+...|... ++. ......+ +.....+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~-~~ip~~le 228 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIH 228 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCC-SSHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccc-cCCCCCHH
Confidence 368999999999999999988631 122222 21 3332211 1 1222333332 210 0000000 0111111
Q ss_pred ---HHHHHHHHh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHHh
Q 040956 893 ---TETASVLQK-ATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTKE 953 (1085)
Q Consensus 893 ---~ela~iL~~-at~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~~ 953 (1085)
..+...|.. ..++-|||||..- + . ..++.+. .|+.+|++|-+...+..
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVw---d-~-------eqLe~f~--pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQ---N-A-------KAWNAFN--LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCC---C-H-------HHHHHHH--SSCCEEEECSCSHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcC---h-H-------HHHHhhC--CCeEEEEeccChHHHHh
Confidence 223334422 4678999999983 3 1 1233332 48999999999887753
No 404
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=83.24 E-value=0.45 Score=46.17 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999854
No 405
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.23 E-value=0.49 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988754
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.21 E-value=0.52 Score=49.55 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhhHHHHhhcc
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCLAVILAQLG 855 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~i~ilaqiG 855 (1085)
+|.+++|.|+.|+||||.++.++- .+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~--~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE--TLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH--HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcC
Confidence 367999999999999999999865 334444
No 407
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=83.16 E-value=0.85 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
.++|+|++|+|||||++.+...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999764
No 408
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=83.11 E-value=0.49 Score=46.47 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998754
No 409
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=83.04 E-value=0.5 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 410
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=82.97 E-value=0.44 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.9
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+|+.||||||+.+.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998754
No 411
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=82.94 E-value=0.5 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999998854
No 412
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.93 E-value=0.48 Score=45.96 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998854
No 413
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.85 E-value=0.49 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999865
No 414
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.58 E-value=0.44 Score=48.74 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=22.6
Q ss_pred CcccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh
Q 040956 807 GLPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 807 ~~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
...++.++.+... ..-.++|+|+.|+|||||++.+..
T Consensus 11 ~~~~~~~~~~~~~----~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 11 VDLGTENLYFQSM----IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp --------CGGGS----EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccccccccc----cCcEEEEECcCCCCHHHHHHHHhc
Confidence 3456666666533 234689999999999999998864
No 415
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=82.57 E-value=0.49 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998854
No 416
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=82.55 E-value=0.51 Score=49.86 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.++++|+||.||||+|.-+.++-
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999888764
No 417
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.53 E-value=1.6 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCcchHHhhhhhHH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.++|+||.|+|||++.|.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 418
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=82.43 E-value=0.52 Score=46.96 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.4
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+|+.|+|||||++.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999998854
No 419
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=82.25 E-value=0.54 Score=45.57 Aligned_cols=21 Identities=38% Similarity=0.295 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998753
No 420
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.18 E-value=0.54 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
++.+++|.|+-|+||||+.+.++-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 421
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=82.15 E-value=0.51 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999998854
No 422
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=81.99 E-value=0.59 Score=45.82 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998865
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=81.93 E-value=0.53 Score=46.75 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999998854
No 424
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=81.92 E-value=0.59 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999854
No 425
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=81.91 E-value=0.47 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
+..++|+|+|++|||||++.+.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 456999999999999999999764
No 426
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=81.87 E-value=0.59 Score=45.15 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 427
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.79 E-value=1.2 Score=49.33 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=55.8
Q ss_pred CEEEEEeCCCCCcchHHhhhhhHHHHhhccccccc-cccccchHHHHHHHcCCccccccccchhhHHhHHHHHHHHhC--
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPC-EMCVLSLADTIFTRLGATDRIMTGESTFLVECTETASVLQKA-- 902 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i~ilaqiG~~VPa-~~a~i~~~d~I~trig~~D~i~~~~Stf~~Em~ela~iL~~a-- 902 (1085)
..+++.||.|.||||+.+.++-- +| ... ....+- .+... +...-..++.++...+...
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~-----~~--~~~~~~~d~~-------~l~~~-----~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEY-----VE--KFPPKASDVL-------EIDPE-----GENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH-----HH--TSCCCTTTEE-------EECCS-----SSCBCHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-----Cc--hhhccCCCEE-------EEcCC-----cCCCCHHHHHHHHHHHhhccc
Confidence 47899999999999999988652 11 110 011110 01111 0011112233333322111
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHh-cCceEEEEEechh-HHHhhcCc
Q 040956 903 -TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVER-INCRLLFATHYHP-LTKEFASH 957 (1085)
Q Consensus 903 -t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~-~~~tiL~aTH~~e-l~~~~~~~ 957 (1085)
.+..++|+||.-+=|. ..+.+++..+-+- .++.+|++|++.. +...+..+
T Consensus 80 ~~~~kvviIdead~lt~-----~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ-----QAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSSSEEEEETTGGGBCH-----HHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred cCCceEEEeccHHHhCH-----HHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 3468999999855442 1145666665432 1456788888764 33334444
No 428
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.60 E-value=0.59 Score=45.46 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998853
No 429
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=81.21 E-value=0.66 Score=45.38 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998853
No 430
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=81.13 E-value=0.6 Score=45.80 Aligned_cols=21 Identities=38% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998854
No 431
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=81.10 E-value=0.65 Score=44.89 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998854
No 432
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.04 E-value=0.96 Score=56.29 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
...++|+||.|+||||+.+.++...
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998753
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.96 E-value=0.61 Score=52.11 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||.|+|||||.+.++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45889999999999999988864
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=80.94 E-value=0.66 Score=46.00 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998864
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=80.89 E-value=0.61 Score=46.15 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 436
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=80.86 E-value=0.67 Score=45.33 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 437
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=80.77 E-value=0.67 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999864
No 438
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=80.71 E-value=0.66 Score=46.50 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998865
No 439
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=80.62 E-value=0.7 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998854
No 440
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=80.60 E-value=0.59 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.9
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+|++++|||||++.+.+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3689999999999999999975
No 441
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=80.46 E-value=0.68 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999987653
No 442
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=80.43 E-value=0.72 Score=46.00 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998864
No 443
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=80.41 E-value=0.75 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.8
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+|.+++|.|+.|+||||+++.++-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999865
No 444
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.41 E-value=0.81 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+|+.|+|||||++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998865
No 445
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=80.39 E-value=0.7 Score=46.11 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 446
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.32 E-value=0.64 Score=52.45 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.+++|+||.|+|||||.+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3789999999999999988865
No 447
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=80.24 E-value=0.73 Score=44.53 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 379999999999999999864
No 448
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=80.23 E-value=0.71 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999865
No 449
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=80.15 E-value=0.72 Score=45.91 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987654
No 450
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=80.11 E-value=0.72 Score=45.22 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998864
No 451
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=80.06 E-value=0.65 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++|+||+|+||||+-+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988864
No 452
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=79.98 E-value=2.4 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+-|+||||+++.++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 899999999999999987754
No 453
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=79.61 E-value=0.76 Score=45.18 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 454
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.45 E-value=0.79 Score=45.02 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998854
No 455
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.36 E-value=1.1 Score=55.62 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCcchHHhhhhhHH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAV 849 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ 849 (1085)
.++|+||.|+|||++.|.++...
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999997643
No 456
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=79.32 E-value=0.78 Score=46.35 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999998854
No 457
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=79.25 E-value=0.74 Score=46.40 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998864
No 458
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=79.19 E-value=0.75 Score=46.77 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998853
No 459
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=78.95 E-value=0.8 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998863
No 460
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.87 E-value=0.8 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=19.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3689999999999999999865
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=78.78 E-value=0.86 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999864
No 462
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=78.77 E-value=0.84 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999998863
No 463
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.74 E-value=0.76 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.1
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||+|+|||||.+.++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 45789999999999999988864
No 464
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=78.68 E-value=0.86 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988754
No 465
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=78.68 E-value=3.5 Score=53.35 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=60.4
Q ss_pred CCEEEEEeCCCCCcchHHhhhhhHH-HHh---hccc-ccccccc----ccchHHHHHHHcCCccccccccchhhHHhHHH
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCLAV-ILA---QLGC-FVPCEMC----VLSLADTIFTRLGATDRIMTGESTFLVECTET 895 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~i~-ila---qiG~-~VPa~~a----~i~~~d~I~trig~~D~i~~~~Stf~~Em~el 895 (1085)
.++++|+|+-|.|||||.+.++--. ... ..|+ +|..... ....+..+...++........... .+.++
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~ 223 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPL---NIEEA 223 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCS---SHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCC---CHHHH
Confidence 4689999999999999998875431 111 1122 3332221 122234455555543322221111 12223
Q ss_pred HHHHHh--C--CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHHhcCceEEEEEechhHHH
Q 040956 896 ASVLQK--A--TQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCRLLFATHYHPLTK 952 (1085)
Q Consensus 896 a~iL~~--a--t~~sLvLLDEpgrGTs~~Dg~aia~avle~L~~~~~~tiL~aTH~~el~~ 952 (1085)
...|+. . .++-|||||.. -+.. .++.+ ..++++|++|.+..++.
T Consensus 224 ~~~l~~~l~~~~~~~LlvlDd~---~~~~--------~~~~~--~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 224 KDRLRVLMLRKHPRSLLILDDV---WDPW--------VLKAF--DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHTSSSSCSCEEEEESC---CCHH--------HHTTT--CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHHhccCCCEEEEEecC---CCHH--------HHHhh--cCCCEEEEEcCCHHHHH
Confidence 333322 2 33889999998 3321 12222 24889999999987764
No 466
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=78.64 E-value=0.86 Score=45.53 Aligned_cols=21 Identities=43% Similarity=0.358 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 467
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=78.58 E-value=0.86 Score=45.55 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998854
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.54 E-value=0.82 Score=47.74 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+++|+||.||||+|.-+.++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988864
No 469
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=78.47 E-value=1.1 Score=52.13 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=20.3
Q ss_pred cccccccccCCCCCCCCCCEEEEEeCCCCCcchHHhhhhh
Q 040956 808 LPVPNDILLGEDSDDCLPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 808 ~~V~ndisL~~~~~~~~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..+|..-.+.. ..++|+|..|+|||||++.+.+
T Consensus 13 ~~~~~~~~m~~-------~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 13 GLVPRGSHMGK-------PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp ----------C-------CEEEEECSSSSSHHHHHHHHEE
T ss_pred CCCCChhhcCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence 46666666654 3799999999999999999854
No 470
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=78.43 E-value=4.9 Score=46.71 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.6
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+..+++++|++|+||||+.-.++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999888765
No 471
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=78.34 E-value=0.83 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 472
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=78.33 E-value=1.3 Score=51.70 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.3
Q ss_pred CCCEEEEEeCCCCCcchHHhhhhh
Q 040956 824 LPRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 824 ~g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
..++.+|.|+-|+||||+++.++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 346889999999999999987653
No 473
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=78.29 E-value=0.89 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+|+.|+|||||++.++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999988653
No 474
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=78.15 E-value=0.79 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.0
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
-.++|+|+.|+|||||++.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998653
No 475
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.89 E-value=0.96 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.++|||||++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999998865
No 476
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.62 E-value=0.97 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998754
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.42 E-value=0.5 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCcchHHhhhhhH
Q 040956 827 TLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i 848 (1085)
-++|+||.|+||||+++.++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999763
No 478
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=77.39 E-value=0.97 Score=45.34 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998854
No 479
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=77.37 E-value=3 Score=42.99 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCcchHHhhhhhHHHHhhccc
Q 040956 827 TLLLTGPNMGGKSTLLRATCLAVILAQLGC 856 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~i~ilaqiG~ 856 (1085)
+++|-|+-||||||.++.++- .+...|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~ 29 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGK 29 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCC
Confidence 578889999999999999865 4444453
No 480
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=77.35 E-value=1 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999865
No 481
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=77.30 E-value=0.98 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.279 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998764
No 482
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=77.21 E-value=1 Score=45.68 Aligned_cols=21 Identities=43% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998854
No 483
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=77.20 E-value=0.99 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.0
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.-.++|+|+.|+|||||++.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998864
No 484
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=77.03 E-value=0.92 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.2
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+||.|+|||++.|.++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 485
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=76.95 E-value=0.92 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.7
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999865
No 486
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.93 E-value=0.97 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.2
Q ss_pred CCEEEEEeCCCCCcchHHhhhhh
Q 040956 825 PRTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 825 g~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
+.+++|+||.|+|||||-+.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999888764
No 487
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=76.93 E-value=1 Score=51.27 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=19.2
Q ss_pred CEEEEEeCCCCCcchHHhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATC 846 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~ 846 (1085)
..++|+|+.||||||++|++-
T Consensus 34 ~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 478999999999999999984
No 488
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=76.85 E-value=1 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998754
No 489
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=76.84 E-value=0.99 Score=45.83 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999854
No 490
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=76.78 E-value=1.1 Score=44.19 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.2
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999988754
No 491
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=76.78 E-value=1 Score=45.04 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 492
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=76.77 E-value=1 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999865
No 493
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=76.58 E-value=1.1 Score=44.69 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999854
No 494
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.52 E-value=1 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.1
Q ss_pred CEEEEEeCCCCCcchHHhhhhhH
Q 040956 826 RTLLLTGPNMGGKSTLLRATCLA 848 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~i 848 (1085)
..++|+|+.|+|||||+..++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999988653
No 495
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=76.47 E-value=1.1 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
No 496
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=76.41 E-value=1 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=19.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998865
No 497
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=76.40 E-value=1 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|+.|+|||||++.+.+
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999864
No 498
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=76.33 E-value=0.95 Score=45.58 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999865
No 499
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=76.17 E-value=1 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.5
Q ss_pred CEEEEEeCCCCCcchHHhhhhh
Q 040956 826 RTLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 826 ~~~iItGpNgsGKSTLLR~i~~ 847 (1085)
-.++|+|..|+|||||++.+.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3689999999999999999854
No 500
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=76.15 E-value=1.1 Score=45.39 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCcchHHhhhhh
Q 040956 827 TLLLTGPNMGGKSTLLRATCL 847 (1085)
Q Consensus 827 ~~iItGpNgsGKSTLLR~i~~ 847 (1085)
.++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998754
Done!