BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040957
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GWH|A Chain A, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|B Chain B, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|C Chain C, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|D Chain D, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|E Chain E, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|F Chain F, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|G Chain G, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|H Chain H, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
Length = 288
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 155/281 (55%), Gaps = 21/281 (7%)
Query: 145 VEVNIFQGITLPDAPKFGKVFXXXXXXXXXXXXSKTVDCLKIVHSLHCYFLLVGDLNIPI 204
+E IF+G + + +VF +TV + VHS H YFL GD + PI
Sbjct: 17 IEEGIFRGQS--EDLGLRQVFGGQVVGQAIYAAKQTVPAERTVHSFHSYFLRPGDSSKPI 74
Query: 205 IYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASFQKEEQGFEHQETTMPLVPAPXXXXXX 264
IY V +RDGNSF+ RRV AIQ G IF + ASFQ +E+GFEHQ TMP VP P
Sbjct: 75 IYDVETLRDGNSFSARRVSAIQNGKPIFYMTASFQSQEEGFEHQ-NTMPDVPPP------ 127
Query: 265 XXXXXXXXTDPRLPRSYRN----KVASKEFVPWPIDIRFCEPNSYTNQSKSPPSLRYWFR 320
++ + R + + KV K P PI++R + ++ S P+ WFR
Sbjct: 128 ----EGLMSETDIARQFSHLIPEKVREKFIGPQPIEMRPVKFHNPLQGSVEEPNRYVWFR 183
Query: 321 AKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASL---SLDHSMWFHRSFRAD 377
A GK+ DD +H+ ++ +ASD F +L PH GF + ++DHSMWFHR FR D
Sbjct: 184 ANGKMPDDLRVHQYLLGYASDFNFLPTALQPH-GIGFLEPGMQIATIDHSMWFHRPFRLD 242
Query: 378 DWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLR 418
DWLL+ + S AS ARGFV G+++N +G L+ S QE ++R
Sbjct: 243 DWLLYAVESTSASGARGFVRGQIYNREGVLVASTVQEGVIR 283
>pdb|1C8U|A Chain A, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
pdb|1C8U|B Chain B, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
Length = 285
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 147/280 (52%), Gaps = 13/280 (4%)
Query: 143 EPVEVNIFQGITLPDAPKFGKVFXXXXXXXXXXXXSKTVDCLKIVHSLHCYFLLVGDLNI 202
E +E +F+G + + +VF +TV ++VHS H YFL GD
Sbjct: 14 EKIEEGLFRGQS--EDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFHSYFLRPGDSKK 71
Query: 203 PIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASFQKEEQGFEHQETTMPLVPAPXXXX 262
PIIY V +RDGNSF+ RRV AIQ G IF + ASFQ E GFEHQ+ TMP PAP
Sbjct: 72 PIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQK-TMPSAPAPDGLP 130
Query: 263 XXXXXXXXXXTDPRLPRSYRNKVASKEFVPWPIDIRFCEPNSYTNQSKSPPSLRYWFRAK 322
LP ++K P+++R E ++ + P + W RA
Sbjct: 131 SETQIAQSLAH--LLPPVLKDKFICDR----PLEVRPVEFHNPLKGHVAEPHRQVWIRAN 184
Query: 323 GKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASL---SLDHSMWFHRSFRADDW 379
G + DD +H+ ++ +ASDL F V+L PH GF + ++DHSMWFHR F ++W
Sbjct: 185 GSVPDDLRVHQYLLGYASDLNFLPVALQPH-GIGFLEPGIQIATIDHSMWFHRPFNLNEW 243
Query: 380 LLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRS 419
LL+ + S AS ARGFV GE + G L+ S QE ++R+
Sbjct: 244 LLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRN 283
>pdb|3U0A|A Chain A, Crystal Structure Of An Acyl-Coa Thioesterase Ii Tesb2
From Mycobacterium Marinum
pdb|3U0A|B Chain B, Crystal Structure Of An Acyl-Coa Thioesterase Ii Tesb2
From Mycobacterium Marinum
Length = 285
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 136/289 (47%), Gaps = 20/289 (6%)
Query: 136 VENILHLEPVEVNIFQGITL-PDAPKFGKVFXXXXXXXXXXXXSKTVDCLKIVHSLHCYF 194
+E IL LE +EVNI++G P++ + F +TVD VHSLH YF
Sbjct: 7 IEEILDLEQLEVNIYRGSVFSPESGFLQRTFGGHVAGQSLVSAVRTVDPRYQVHSLHGYF 66
Query: 195 LLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASFQKEEQGFEHQETTMPL 254
L GD P ++ V R RDG SF TRRV+A+Q G +IF++ ASFQ + G HQ+
Sbjct: 67 LRSGDAQEPTVFLVERTRDGGSFVTRRVNAVQHGEVIFSMGASFQTAQNGISHQDAMPAA 126
Query: 255 VPAPXXXXXXXXXXXXXXTDPRLPRSYR--NKVASKEFVPWPIDIRFCEPNSYTNQSKSP 312
P RS R + ++F W D+R +
Sbjct: 127 PPPDDLPGL---------------RSVRVFDDAGFRQFEEW--DVRIVPRDLLAPLPGKA 169
Query: 313 PSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHR 372
+ WFR + L DD LH C +A+ SDL + H + SLDH+MWF R
Sbjct: 170 SQQQVWFRHRDPLPDDPVLHICALAYMSDLTLLGSAQVTHLAEREHLQVASLDHAMWFMR 229
Query: 373 SFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSPK 421
FRAD+WLL+ SP A R G++F GEL+ ++ QE L R P
Sbjct: 230 GFRADEWLLYDQSSPSAGGGRALTHGKIFTQGGELVAAVMQEGLTRYPS 278
>pdb|3RD7|A Chain A, Crystal Structure Of Acyl-Coa Thioesterase From
Mycobacterium Avium
pdb|3RD7|B Chain B, Crystal Structure Of Acyl-Coa Thioesterase From
Mycobacterium Avium
Length = 286
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 137/298 (45%), Gaps = 34/298 (11%)
Query: 130 VGTCSLVENILHLEPVEVNIFQGITLPDAPKFGKVFXXXXXXXXXXXXSKTVDCLKIVHS 189
+ T V ++L L+ ++ F G T PD P + +T ++ HS
Sbjct: 4 ISTLEDVLSLLDLQQIDDAAFVG-TQPDTPNH-HIIGSQVAAQALMAAGRTTPG-RLAHS 60
Query: 190 LHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASFQKEEQGFEHQE 249
+H YFL GD PI Y V +RDG + ++RRV A Q G ++F LASF + Q+
Sbjct: 61 MHMYFLRRGDARQPIQYDVTPLRDGGTISSRRVTASQSGVVLFEALASFTIIADDVDWQQ 120
Query: 250 TTMPLVPAPXXXXXXXXXXXXXXTDPRLPRSYRNKVA--SKEFVPW-----PIDIRFCE- 301
MP V P + +A ++EF W P +R+ +
Sbjct: 121 -RMPDVAGPSAV-----------------HGLEDLLAPYAEEFGDWWPQQRPFTMRYLDA 162
Query: 302 -PNSYTNQSK-SPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRK--GF 357
P + S PP LR W RA G+++DD ++ CVVA+ S L + R G
Sbjct: 163 PPRVALDLSDPPPPRLRIWLRANGEVTDDPLVNSCVVAYLSALTLLECVMTTMRTTPVGP 222
Query: 358 RTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEA 415
R ++L +DH++WFHR+ DWLLF SP RG +G ++N GEL+ TQE
Sbjct: 223 RLSAL-VDHTIWFHRAADFTDWLLFDQFSPSIVGRRGLATGTLYNRSGELVCIATQEG 279
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 5 EVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSV 64
E +EFL VP Q LP L ++AD++ Y GEY++R G G+ + I +G+ V+
Sbjct: 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTR 213
Query: 65 SDSVQAEEEDRPEF--QLKRYDYFGHGS--PTIFRQGDVIALTELTCLVLPHE 113
DS + P F L + D+FG + R +VIA +TCLV+ +
Sbjct: 214 EDSPNED----PVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRD 262
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 15 LLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVS 63
++ L S ++ I D + YGK ++++GD+G +Y + +G+ EV+
Sbjct: 46 FMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVT 94
>pdb|1TBU|A Chain A, Crystal Structure Of N-terminal Domain Of Yeast
Peroxisomal Thioesterase-1
pdb|1TBU|B Chain B, Crystal Structure Of N-terminal Domain Of Yeast
Peroxisomal Thioesterase-1
pdb|1TBU|C Chain C, Crystal Structure Of N-terminal Domain Of Yeast
Peroxisomal Thioesterase-1
pdb|1TBU|D Chain D, Crystal Structure Of N-terminal Domain Of Yeast
Peroxisomal Thioesterase-1
Length = 118
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 134 SLVENILHLEPVEVNIFQGITLPDAPKFGK-VFXXXXXXXXXXXXSKTVDCLKIVHSLHC 192
S +E IL L P+ F LP AP K F TV SLH
Sbjct: 9 SNLEKILELVPLSPTSFVTKYLPAAPVGSKGTFGGTLVSQSLLASLHTVPLNFFPTSLHS 68
Query: 193 YFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASF 238
YF+ GD I Y V +R+G +F ++V A Q +IFT + F
Sbjct: 69 YFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILF 114
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ L +P+L+ L ++AD + K Y GE ++R+GD GE Y I G +VS
Sbjct: 125 DLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ 184
Query: 68 VQAEEEDRPEFQLKRYDYFGH 88
+LK +DYFG
Sbjct: 185 GVIN-------KLKDHDYFGE 198
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 9 FLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSV 68
F+ +P L+ L S ++ D++ K Y GE ++ GD+ + + + GE ++++
Sbjct: 268 FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKG 327
Query: 69 QAEEEDRPEFQLKRY---DYFGH 88
++E E+ ++ R YFG
Sbjct: 328 KSEVEENGAVEIARCFRGQYFGE 350
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 13 VPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSV 64
+ L + L + ++ D + K +GE+V+ GD G+ Y I G ++ V
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV 201
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 9 FLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSV 68
F+ +P L+ L S ++ D++ K Y GE ++ GD+ + + + GE ++++
Sbjct: 268 FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKG 327
Query: 69 QAEEEDRPEFQLKRY---DYFGH 88
++E E+ ++ R YFG
Sbjct: 328 KSEVEENGAVEIARCFRGQYFGE 350
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 13 VPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSV 64
+ L + L + ++ D + K +GE+V+ GD G+ Y I G ++ V
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV 201
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 9 FLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSV 68
F+ +P L+ L S ++ D++ K Y GE ++ GD + + + GE +++
Sbjct: 157 FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKG 216
Query: 69 QAEEEDRPEFQLKRY---DYFGH 88
+++ E+ ++ R YFG
Sbjct: 217 KSDIEENGAVEIARCLRGQYFGE 239
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 19/150 (12%)
Query: 9 FLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSV 68
F+ VPL + L S +I D++ K Y GE ++ G+ + Y I GE + +
Sbjct: 161 FIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILIRSKT 220
Query: 69 QAEEE-DRPEFQLK---RYDYFGHGSPTIF--RQGDVIALTELTCLVLPHEHCNWLETKS 122
++ + E ++ + YFG + R + ++ CLV+
Sbjct: 221 KSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYGVGDVKCLVM-----------D 269
Query: 123 IWSADKTVGTCS--LVENILHLEPVEVNIF 150
+ + ++ +G C + NI H E V +F
Sbjct: 270 VQAFERLLGPCMDIMKRNISHYEEQLVKMF 299
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
EFLS V +L+ L +AD + ++ GE +V G+ G+ Y I EG A SV
Sbjct: 248 EFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTA--SVLQR 305
Query: 68 VQAEEEDRPEFQLKRYDYFGHGSPTIF--RQGDVIALTELTCLVL 110
EE +L DYFG + + R V+A L C+ L
Sbjct: 306 RSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKL 350
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 13 VPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQA 70
+PL + L+ ++ I+ GE+++R GD + IYF+ G EV ++V A
Sbjct: 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLA 137
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 35.4 bits (80), Expect = 0.063, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 15 LLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVS 63
++ L S ++ I D + YGK ++++GD+G +Y + +G+ EV+
Sbjct: 30 FMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVT 78
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
EFLS V +L+ L +AD + ++ G+ +V G+ G+ + I EG A V
Sbjct: 155 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAV----- 209
Query: 68 VQAEEEDRPEFQLKRY---DYFGHGSPTIF--RQGDVIALTELTCLVL 110
+Q E+ ++ R DYFG + + R V+A L C+ L
Sbjct: 210 LQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKL 257
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VPL Q+L + L I + + G + R G+ G+ ++F+ EG V+ +
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 70
Query: 68 VQ 69
V+
Sbjct: 71 VE 72
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With
Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VPL Q+L + L I + + G + R G+ G+ ++F+ EG V+ +
Sbjct: 15 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 74
Query: 68 VQ 69
V+
Sbjct: 75 VE 76
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
EFLS V +L+ L +AD + ++ G+ +V G+ G+ + I EG A V
Sbjct: 153 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAV----- 207
Query: 68 VQAEEEDRPEFQLKRY---DYFGHGSPTIF--RQGDVIALTELTCLVL 110
+Q E+ ++ R DYFG + + R V+A L C+ L
Sbjct: 208 LQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKL 255
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VPL Q+L + L I + + G + R G+ G+ ++F+ EG V+ +
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 70
Query: 68 VQ 69
V+
Sbjct: 71 VE 72
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 32.7 bits (73), Expect = 0.36, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VPL Q+L + L I + + G + R G+ G+ ++F+ EG V+ +
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 68 VQ 69
V+
Sbjct: 73 VE 74
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 32.7 bits (73), Expect = 0.36, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VPL Q+L + L I + + G + R G+ G+ ++F+ EG V+ +
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 68 VQ 69
V+
Sbjct: 73 VE 74
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp
Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp
Bound
Length = 140
Score = 32.7 bits (73), Expect = 0.36, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VPL Q+L + L I + + G + R G+ G+ ++F+ EG V+ +
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 68 VQ 69
V+
Sbjct: 73 VE 74
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
EFLS V +L+ L +AD + ++ G+ +V G+ G+ + I EG A V
Sbjct: 157 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAV----- 211
Query: 68 VQAEEEDRPEFQLKRY---DYFGHGSPTIFR--QGDVIALTELTCLVL 110
+Q E+ ++ R DYFG + + R V+A L C+ L
Sbjct: 212 LQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKL 259
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VPL Q+L + L I + + G + R G+ G+ ++F+ EG V+ +
Sbjct: 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 287
Query: 68 VQ 69
V+
Sbjct: 288 VE 289
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFG 87
G+Y++R+G +G+ +YFI G A V S E +L YFG
Sbjct: 106 GDYIIREGAVGKKMYFIQHGVAGVITKSS--------KEMKLTDGSYFG 146
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 35/63 (55%)
Query: 8 EFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDS 67
+ ++ VP + + R+ ++ + + +YV+++G G+ ++FI +G ++ +SD
Sbjct: 71 DLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDG 130
Query: 68 VQA 70
V A
Sbjct: 131 VIA 133
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFG 87
G+Y++R+G IG+ +YFI G V + E +L YFG
Sbjct: 103 GDYIIREGTIGKKMYFIQHGVVSVLTKGN--------KEMKLSDGSYFG 143
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEV 62
G+Y++R+G IG+ +YFI G V
Sbjct: 100 GDYIIREGTIGKKMYFIQHGVVSV 123
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEV 62
G+Y++R+G IG+ +YFI G V
Sbjct: 106 GDYIIREGTIGKKMYFIQHGVVSV 129
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFG 87
G+Y++R+G IG+ +YFI G V + E +L YFG
Sbjct: 106 GDYIIREGTIGKKMYFIQHGVVSVLTKGN--------KEMKLSDGSYFG 146
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEV 62
G+Y++R+G IG+ +YFI G V
Sbjct: 100 GDYIIREGTIGKKMYFIQHGVVSV 123
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFG 87
G+Y++R+G IG+ +YFI G V + E +L YFG
Sbjct: 103 GDYIIREGTIGKKMYFIQHGVVSVLTKGN--------KEMKLSDGSYFG 143
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFG 87
G+Y++R+G IG+ +YFI G V + E +L YFG
Sbjct: 103 GDYIIREGTIGKKMYFIQHGVVSVLTKGN--------KEMKLSDGSYFG 143
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEV 62
G+Y++R+G IG+ +YFI G V
Sbjct: 105 GDYIIREGTIGKKMYFIQHGVVSV 128
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFG 87
G+Y++R+G IG+ +YFI G V + E +L YFG
Sbjct: 101 GDYIIREGTIGKKMYFIQHGVVSVLTKGN--------KEMKLSDGSYFG 141
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 39 GEYVVRDGDIGEGIYFIWEGEAEV 62
G+Y++R+G IG+ YFI G V
Sbjct: 103 GDYIIREGTIGKKXYFIQHGVVSV 126
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 383 VIVSPVASKARGFVSGEM---FNTKGELLVS 410
V +SPV +KARG G++ FN +G+LL
Sbjct: 709 VYISPVDAKARGIKDGDIVRVFNDRGQLLAG 739
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 2 DPDEVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAE 61
D D + L V ++ + L++I + KG + R GDIG Y + G +
Sbjct: 36 DVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLD 95
Query: 62 VSVSDS 67
V VS++
Sbjct: 96 VKVSET 101
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 2 DPDEVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAE 61
D D + L V ++ + L++I + KG + R GDIG Y + G +
Sbjct: 36 DVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLD 95
Query: 62 VSVSDS 67
V VS++
Sbjct: 96 VKVSET 101
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 13 VPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSV 64
+ L + L + ++ D + K +GE+V+ GD G+ Y I G ++ V
Sbjct: 49 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV 100
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 13 VPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSV 64
+ L + L + ++ D + K +GE+V+ GD G+ Y I G ++ V
Sbjct: 43 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV 94
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 338 FASDLIFSSVSLNPHRRKGFRT-----ASLSLDHSMWFHRSFRADDWLLFVI 384
FA ++ S+ L PH+++ T SL H + FH F DD++ V+
Sbjct: 70 FAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVL 121
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 337 AFASDLIFSSVSLNPHRRKGFRT-----ASLSLDHSMWFHRSFRADDWLLFVI 384
FA ++ S+ L PH+++ T SL H + FH F DD++ V+
Sbjct: 53 VFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVL 105
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 338 FASDLIFSSVSLNPHRRKGFRT-----ASLSLDHSMWFHRSFRADDWLLFVI 384
FA ++ S+ L PH+++ T SL H + FH F DD++ V+
Sbjct: 70 FAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVL 121
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 338 FASDLIFSSVSLNPHRRKGFRT-----ASLSLDHSMWFHRSFRADDWLLFVI 384
FA ++ S+ L PH+++ T SL H + FH F DD++ V+
Sbjct: 70 FAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,301,142
Number of Sequences: 62578
Number of extensions: 481980
Number of successful extensions: 1158
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 59
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)