Query 040957
Match_columns 430
No_of_seqs 323 out of 2253
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02868 acyl-CoA thioesterase 100.0 1E-76 2.3E-81 584.6 44.2 413 1-417 1-413 (413)
2 COG1946 TesB Acyl-CoA thioeste 100.0 1E-64 2.2E-69 451.2 27.5 281 133-422 5-287 (289)
3 PRK10526 acyl-CoA thioesterase 100.0 5.4E-60 1.2E-64 441.4 31.7 279 133-420 5-285 (286)
4 KOG3016 Acyl-CoA thioesterase 100.0 6.4E-56 1.4E-60 392.3 23.6 278 134-414 8-294 (294)
5 TIGR00189 tesB acyl-CoA thioes 100.0 2.2E-52 4.8E-57 390.9 31.5 268 143-418 1-271 (271)
6 PF13622 4HBT_3: Thioesterase- 100.0 1.8E-38 3.8E-43 294.8 21.4 239 157-417 4-255 (255)
7 PF02551 Acyl_CoA_thio: Acyl-C 100.0 4.2E-29 9.1E-34 197.8 4.1 123 292-416 8-131 (131)
8 cd03444 Thioesterase_II_repeat 99.9 6.5E-25 1.4E-29 173.2 11.9 102 316-417 2-104 (104)
9 cd03445 Thioesterase_II_repeat 99.9 1.1E-22 2.4E-27 157.2 13.0 93 148-240 1-94 (94)
10 cd00556 Thioesterase_II Thioes 99.6 1.7E-14 3.7E-19 113.4 11.3 98 316-417 2-99 (99)
11 PRK09392 ftrB transcriptional 99.5 2.3E-14 5E-19 131.4 10.7 110 7-120 6-117 (236)
12 cd00038 CAP_ED effector domain 99.5 3.8E-13 8.1E-18 107.9 9.4 103 15-120 1-105 (115)
13 PRK11753 DNA-binding transcrip 99.4 5.4E-13 1.2E-17 120.1 10.5 102 16-120 5-109 (211)
14 KOG1113 cAMP-dependent protein 99.4 7.6E-13 1.6E-17 121.1 9.5 108 5-120 119-228 (368)
15 PRK11161 fumarate/nitrate redu 99.4 9.9E-13 2.1E-17 120.5 9.7 108 10-120 15-124 (235)
16 KOG0614 cGMP-dependent protein 99.4 2.4E-13 5.2E-18 129.9 4.4 115 4-120 268-385 (732)
17 smart00100 cNMP Cyclic nucleot 99.4 4.4E-12 9.5E-17 102.3 10.2 103 15-120 1-107 (120)
18 PRK10402 DNA-binding transcrip 99.3 8.1E-13 1.8E-17 120.2 5.5 110 4-120 8-119 (226)
19 COG0664 Crp cAMP-binding prote 99.3 4.1E-12 8.8E-17 114.2 9.4 107 11-120 3-111 (214)
20 PF00027 cNMP_binding: Cyclic 99.3 1.5E-12 3.2E-17 100.3 5.6 85 33-120 1-87 (91)
21 PLN03192 Voltage-dependent pot 99.3 1.4E-11 3.1E-16 132.3 10.9 110 7-120 373-484 (823)
22 KOG0498 K+-channel ERG and rel 99.2 4.7E-12 1E-16 129.2 4.7 111 6-120 417-531 (727)
23 PRK13918 CRP/FNR family transc 99.2 2.7E-11 5.9E-16 108.2 8.6 83 30-115 5-90 (202)
24 COG2905 Predicted signal-trans 99.2 2.3E-11 5.1E-16 118.0 8.5 110 4-120 3-114 (610)
25 KOG0614 cGMP-dependent protein 99.1 9.3E-12 2E-16 119.2 0.7 109 4-120 150-260 (732)
26 PRK09391 fixK transcriptional 99.1 1.4E-10 3E-15 105.8 8.2 90 27-120 34-123 (230)
27 cd00556 Thioesterase_II Thioes 99.1 3.9E-10 8.4E-15 88.4 9.5 79 161-239 14-98 (99)
28 KOG0500 Cyclic nucleotide-gate 99.0 8.2E-10 1.8E-14 105.4 8.3 108 7-120 306-422 (536)
29 TIGR03697 NtcA_cyano global ni 99.0 6.5E-10 1.4E-14 98.5 6.6 79 39-120 1-83 (193)
30 KOG1113 cAMP-dependent protein 99.0 3.1E-10 6.7E-15 104.2 3.7 109 5-120 237-347 (368)
31 KOG0499 Cyclic nucleotide-gate 98.8 3.6E-09 7.8E-14 102.8 6.1 109 7-120 526-639 (815)
32 KOG0501 K+-channel KCNQ [Inorg 98.3 2.7E-07 5.8E-12 89.8 1.8 103 7-117 547-653 (971)
33 cd03443 PaaI_thioesterase PaaI 98.0 4.1E-05 9E-10 61.1 9.7 79 160-239 27-112 (113)
34 TIGR02286 PaaD phenylacetic ac 98.0 7.6E-05 1.6E-09 59.9 10.9 79 161-239 30-112 (114)
35 KOG2968 Predicted esterase of 98.0 2.4E-06 5.3E-11 87.3 1.7 114 4-120 473-596 (1158)
36 PRK10254 thioesterase; Provisi 97.9 0.00018 4E-09 59.4 10.7 79 160-239 49-134 (137)
37 PLN02322 acyl-CoA thioesterase 97.8 0.00029 6.3E-09 59.2 11.2 82 160-241 41-134 (154)
38 TIGR00369 unchar_dom_1 unchara 97.8 0.00017 3.7E-09 58.2 9.1 78 161-239 32-116 (117)
39 COG2050 PaaI HGG motif-contain 97.8 0.00024 5.3E-09 59.3 10.0 80 161-241 50-137 (141)
40 PRK10293 acyl-CoA esterase; Pr 97.7 0.00046 9.9E-09 57.1 11.0 79 160-239 49-134 (136)
41 TIGR02447 yiiD_Cterm thioester 97.6 0.00036 7.8E-09 58.0 8.8 80 160-239 36-135 (138)
42 PRK11688 hypothetical protein; 97.5 0.00051 1.1E-08 58.3 8.9 78 161-239 55-152 (154)
43 PRK04424 fatty acid biosynthes 97.4 0.0015 3.2E-08 57.2 10.6 81 160-240 100-181 (185)
44 TIGR00369 unchar_dom_1 unchara 97.4 0.0013 2.7E-08 53.0 9.0 80 330-413 34-113 (117)
45 PF04831 Popeye: Popeye protei 97.4 0.0013 2.9E-08 54.0 8.7 95 18-120 14-117 (153)
46 PF03061 4HBT: Thioesterase su 97.3 0.00085 1.9E-08 49.5 6.5 70 162-231 2-77 (79)
47 PF02551 Acyl_CoA_thio: Acyl-C 97.2 0.00021 4.5E-09 57.5 2.7 68 162-235 19-127 (131)
48 PRK11688 hypothetical protein; 97.2 0.0029 6.3E-08 53.6 9.4 86 330-416 57-152 (154)
49 KOG2968 Predicted esterase of 97.1 0.00053 1.1E-08 70.8 4.8 110 5-120 92-210 (1158)
50 TIGR02286 PaaD phenylacetic ac 97.1 0.0052 1.1E-07 49.2 9.6 80 329-414 31-110 (114)
51 PRK11832 putative DNA-binding 97.1 0.0021 4.6E-08 56.4 7.8 94 25-125 16-113 (207)
52 PRK10254 thioesterase; Provisi 96.9 0.014 3.1E-07 48.2 10.9 84 329-416 51-134 (137)
53 PRK10694 acyl-CoA esterase; Pr 96.9 0.01 2.2E-07 48.8 9.6 81 160-240 25-119 (133)
54 PRK10293 acyl-CoA esterase; Pr 96.8 0.016 3.5E-07 47.9 10.2 85 329-417 51-135 (136)
55 cd03442 BFIT_BACH Brown fat-in 96.8 0.015 3.3E-07 46.8 10.0 81 161-241 22-113 (123)
56 cd03440 hot_dog The hotdog fol 96.7 0.012 2.7E-07 43.6 8.4 79 160-238 14-99 (100)
57 KOG3542 cAMP-regulated guanine 96.7 0.0019 4.1E-08 64.7 4.3 105 5-117 278-386 (1283)
58 cd03443 PaaI_thioesterase PaaI 96.6 0.028 6.1E-07 44.4 10.2 82 330-415 30-111 (113)
59 PLN02322 acyl-CoA thioesterase 96.5 0.024 5.3E-07 47.7 9.3 91 329-423 43-139 (154)
60 cd03440 hot_dog The hotdog fol 96.5 0.033 7.2E-07 41.2 9.5 55 360-414 44-98 (100)
61 KOG3328 HGG motif-containing t 96.4 0.02 4.3E-07 46.9 8.1 77 161-237 53-136 (148)
62 PF03061 4HBT: Thioesterase su 96.2 0.028 6E-07 41.2 7.5 51 359-409 29-79 (79)
63 COG1607 Acyl-CoA hydrolase [Li 96.1 0.11 2.3E-06 43.7 10.9 81 160-241 27-119 (157)
64 cd01288 FabZ FabZ is a 17kD be 95.8 0.082 1.8E-06 43.1 9.1 78 162-239 46-129 (131)
65 PRK00006 fabZ (3R)-hydroxymyri 95.6 0.15 3.3E-06 42.6 10.4 78 163-240 62-144 (147)
66 KOG3328 HGG motif-containing t 95.6 0.071 1.5E-06 43.8 7.7 107 311-421 35-143 (148)
67 cd03455 SAV4209 SAV4209 is a S 95.6 0.15 3.3E-06 41.2 9.9 76 161-237 43-121 (123)
68 TIGR01750 fabZ beta-hydroxyacy 95.6 0.15 3.4E-06 42.2 10.1 78 161-238 53-138 (140)
69 COG2050 PaaI HGG motif-contain 95.4 0.12 2.5E-06 43.1 8.7 89 329-421 51-140 (141)
70 cd00586 4HBT 4-hydroxybenzoyl- 95.3 0.19 4.1E-06 38.9 9.4 79 160-238 14-106 (110)
71 KOG3542 cAMP-regulated guanine 95.0 0.043 9.4E-07 55.4 5.7 94 5-112 34-127 (1283)
72 cd03453 SAV4209_like SAV4209_l 94.9 0.39 8.4E-06 39.0 10.2 76 161-236 44-124 (127)
73 PF03756 AfsA: A-factor biosyn 94.5 0.43 9.3E-06 39.1 9.7 56 184-239 71-131 (132)
74 cd00493 FabA_FabZ FabA/Z, beta 94.3 0.52 1.1E-05 38.2 9.7 80 159-238 42-129 (131)
75 cd03449 R_hydratase (R)-hydrat 93.9 0.82 1.8E-05 36.9 10.2 79 160-238 44-126 (128)
76 cd03441 R_hydratase_like (R)-h 93.4 0.99 2.1E-05 36.2 9.9 77 160-236 41-124 (127)
77 cd03451 FkbR2 FkbR2 is a Strep 93.1 0.57 1.2E-05 39.0 8.1 80 160-239 52-141 (146)
78 cd03446 MaoC_like MoaC_like 93.0 1 2.2E-05 37.1 9.4 78 160-237 49-137 (140)
79 cd00586 4HBT 4-hydroxybenzoyl- 92.7 0.53 1.1E-05 36.3 7.1 57 361-417 52-108 (110)
80 cd03442 BFIT_BACH Brown fat-in 92.5 2.4 5.2E-05 33.7 10.9 58 361-419 52-114 (123)
81 cd03447 FAS_MaoC FAS_MaoC, the 92.4 2.3 5E-05 34.5 10.5 77 161-239 42-124 (126)
82 PRK10800 acyl-CoA thioesterase 92.3 0.88 1.9E-05 37.0 8.1 61 360-420 53-113 (130)
83 PRK13693 (3R)-hydroxyacyl-ACP 92.3 1.4 3.1E-05 36.6 9.3 77 160-236 53-137 (142)
84 PLN02647 acyl-CoA thioesterase 91.9 1.6 3.4E-05 43.4 10.6 82 160-241 304-401 (437)
85 TIGR02799 thio_ybgC tol-pal sy 91.6 0.98 2.1E-05 36.3 7.5 54 185-238 53-106 (126)
86 COG0764 FabA 3-hydroxymyristoy 91.3 4.4 9.6E-05 33.8 11.1 93 147-240 45-143 (147)
87 COG4109 Predicted transcriptio 90.8 0.51 1.1E-05 44.5 5.6 57 183-239 373-429 (432)
88 TIGR02447 yiiD_Cterm thioester 90.5 2 4.4E-05 35.5 8.5 76 331-412 40-131 (138)
89 PLN02647 acyl-CoA thioesterase 90.4 1.8 3.8E-05 43.1 9.3 82 161-242 108-210 (437)
90 PRK13692 (3R)-hydroxyacyl-ACP 90.0 2.1 4.5E-05 36.4 8.3 64 363-426 86-153 (159)
91 PRK13188 bifunctional UDP-3-O- 89.8 3.1 6.7E-05 41.7 10.5 72 169-240 381-459 (464)
92 PRK08190 bifunctional enoyl-Co 88.9 4.7 0.0001 40.8 11.3 82 160-241 57-142 (466)
93 PF13452 MaoC_dehydrat_N: N-te 88.8 0.71 1.5E-05 37.7 4.6 50 361-410 75-131 (132)
94 cd03448 HDE_HSD HDE_HSD The R 88.3 3.4 7.4E-05 33.3 8.1 70 161-233 44-115 (122)
95 PF07977 FabA: FabA-like domai 88.2 2.9 6.4E-05 34.4 7.9 45 190-234 89-137 (138)
96 PF09500 YiiD_Cterm: Putative 88.0 3.1 6.7E-05 34.6 7.7 92 145-238 25-140 (144)
97 cd03451 FkbR2 FkbR2 is a Strep 86.9 2.9 6.4E-05 34.6 7.3 54 367-420 85-145 (146)
98 cd03449 R_hydratase (R)-hydrat 86.9 2.9 6.4E-05 33.5 7.1 50 364-413 73-124 (128)
99 cd03454 YdeM YdeM is a Bacillu 86.8 5.9 0.00013 32.5 9.0 77 161-237 48-136 (140)
100 TIGR02799 thio_ybgC tol-pal sy 86.7 4 8.6E-05 32.7 7.8 59 360-419 52-110 (126)
101 cd01287 FabA FabA, beta-hydrox 85.8 13 0.00028 31.2 10.4 86 149-235 41-141 (150)
102 PRK13691 (3R)-hydroxyacyl-ACP 85.5 4 8.6E-05 34.9 7.4 61 363-423 86-150 (166)
103 cd01289 FabA_like Domain of un 85.1 9.4 0.0002 31.5 9.3 76 163-238 49-134 (138)
104 COG0824 FcbC Predicted thioest 84.9 6 0.00013 32.6 8.0 61 359-420 55-115 (137)
105 PLN02864 enoyl-CoA hydratase 84.6 9.2 0.0002 36.4 10.1 76 161-239 227-304 (310)
106 PRK13692 (3R)-hydroxyacyl-ACP 84.6 8.8 0.00019 32.5 9.0 49 190-238 89-142 (159)
107 cd03452 MaoC_C MaoC_C The C-t 84.3 9.7 0.00021 31.5 9.1 78 160-238 49-136 (142)
108 PF01575 MaoC_dehydratas: MaoC 83.5 3.2 7E-05 33.3 5.7 53 160-212 49-103 (122)
109 COG0824 FcbC Predicted thioest 83.1 7.2 0.00016 32.1 7.7 55 184-238 56-110 (137)
110 PF14539 DUF4442: Domain of un 81.7 5.2 0.00011 32.7 6.3 95 142-236 23-128 (132)
111 PRK05174 3-hydroxydecanoyl-(ac 81.1 21 0.00045 30.8 10.0 86 149-235 67-159 (172)
112 PRK07531 bifunctional 3-hydrox 78.6 14 0.0003 37.7 9.6 60 361-420 396-455 (495)
113 PF07883 Cupin_2: Cupin domain 78.2 9.7 0.00021 26.7 6.2 67 34-110 3-70 (71)
114 cd03452 MaoC_C MaoC_C The C-t 76.6 10 0.00022 31.4 6.7 54 366-419 81-140 (142)
115 TIGR01749 fabA beta-hydroxyacy 76.3 33 0.00071 29.4 9.8 86 149-235 64-156 (169)
116 TIGR00051 acyl-CoA thioester h 74.8 13 0.00028 29.0 6.7 45 185-229 49-93 (117)
117 PF13279 4HBT_2: Thioesterase- 74.5 15 0.00033 29.0 7.1 53 184-236 43-99 (121)
118 cd03446 MaoC_like MoaC_like 74.3 13 0.00028 30.4 6.7 49 367-415 84-138 (140)
119 PF07977 FabA: FabA-like domai 74.2 40 0.00087 27.5 9.7 49 362-411 85-137 (138)
120 cd03454 YdeM YdeM is a Bacillu 73.6 14 0.0003 30.2 6.8 51 367-417 82-139 (140)
121 PF13279 4HBT_2: Thioesterase- 72.7 44 0.00096 26.2 9.4 63 359-421 42-107 (121)
122 PRK10800 acyl-CoA thioesterase 72.0 19 0.00041 29.0 7.1 55 184-238 53-108 (130)
123 PF14539 DUF4442: Domain of un 72.0 18 0.00038 29.6 6.9 80 330-414 47-129 (132)
124 cd03447 FAS_MaoC FAS_MaoC, the 71.8 20 0.00044 28.9 7.1 51 363-413 70-121 (126)
125 PF13756 Stimulus_sens_1: Stim 71.5 3.5 7.6E-05 32.7 2.5 22 394-415 17-38 (112)
126 smart00835 Cupin_1 Cupin. This 71.4 21 0.00045 29.6 7.4 79 31-113 32-111 (146)
127 TIGR00051 acyl-CoA thioester h 71.3 26 0.00056 27.2 7.7 54 361-414 49-102 (117)
128 PRK00006 fabZ (3R)-hydroxymyri 70.4 18 0.00039 29.9 6.8 52 366-418 94-145 (147)
129 cd03453 SAV4209_like SAV4209_l 68.6 22 0.00047 28.6 6.7 48 365-412 72-123 (127)
130 KOG2763 Acyl-CoA thioesterase 68.5 14 0.00031 35.5 6.2 57 160-216 213-274 (357)
131 PF05899 Cupin_3: Protein of u 67.9 9.8 0.00021 27.5 4.0 44 35-88 13-56 (74)
132 cd01288 FabZ FabZ is a 17kD be 67.6 16 0.00035 29.3 5.8 48 366-414 80-127 (131)
133 COG2030 MaoC Acyl dehydratase 65.1 27 0.00059 29.5 6.9 56 365-420 98-157 (159)
134 cd03455 SAV4209 SAV4209 is a S 65.1 27 0.00059 27.8 6.6 47 366-412 72-119 (123)
135 cd03445 Thioesterase_II_repeat 64.9 26 0.00057 26.6 6.1 48 363-411 41-88 (94)
136 PRK04424 fatty acid biosynthes 64.7 29 0.00063 30.2 7.1 56 361-417 126-181 (185)
137 PLN02864 enoyl-CoA hydratase 62.9 25 0.00054 33.5 6.8 61 360-420 93-158 (310)
138 COG2030 MaoC Acyl dehydratase 61.6 61 0.0013 27.4 8.4 78 160-237 66-151 (159)
139 TIGR01750 fabZ beta-hydroxyacy 60.1 27 0.00058 28.6 5.8 48 366-414 90-137 (140)
140 PRK13290 ectC L-ectoine syntha 59.3 60 0.0013 26.2 7.5 67 34-110 40-106 (125)
141 PF13622 4HBT_3: Thioesterase- 58.3 28 0.0006 31.8 6.2 48 363-412 36-83 (255)
142 PRK07531 bifunctional 3-hydrox 58.0 37 0.0008 34.7 7.6 55 184-238 395-450 (495)
143 cd00493 FabA_FabZ FabA/Z, beta 54.2 49 0.0011 26.3 6.4 46 366-412 81-126 (131)
144 PF12571 DUF3751: Phage tail-c 53.9 37 0.00079 28.8 5.7 39 375-413 69-107 (159)
145 KOG0772 Uncharacterized conser 53.9 16 0.00035 36.5 3.9 61 360-421 285-345 (641)
146 PF00400 WD40: WD domain, G-be 53.3 28 0.00061 20.8 3.8 30 390-419 8-37 (39)
147 cd03441 R_hydratase_like (R)-h 52.6 62 0.0013 25.4 6.8 49 363-411 70-122 (127)
148 PF13313 DUF4082: Domain of un 51.2 19 0.00041 30.0 3.4 47 363-412 18-64 (149)
149 PRK13691 (3R)-hydroxyacyl-ACP 51.2 60 0.0013 27.7 6.6 51 191-241 90-145 (166)
150 PRK08190 bifunctional enoyl-Co 50.9 65 0.0014 32.7 7.9 60 363-422 85-146 (466)
151 COG3718 IolB Uncharacterized e 49.7 72 0.0016 28.7 6.8 73 31-111 31-109 (270)
152 cd01287 FabA FabA, beta-hydrox 48.5 73 0.0016 26.6 6.6 50 367-417 92-146 (150)
153 COG1917 Uncharacterized conser 47.2 51 0.0011 26.6 5.4 49 32-89 46-95 (131)
154 TIGR02278 PaaN-DH phenylacetic 43.5 1.1E+02 0.0025 32.5 8.6 77 161-238 573-659 (663)
155 COG0662 {ManC} Mannose-6-phosp 42.8 74 0.0016 25.6 5.7 33 31-63 38-71 (127)
156 TIGR03037 anthran_nbaC 3-hydro 42.5 71 0.0015 27.0 5.5 58 49-114 48-105 (159)
157 KOG0645 WD40 repeat protein [G 41.8 74 0.0016 29.4 5.8 59 359-421 165-223 (312)
158 cd03444 Thioesterase_II_repeat 40.4 1.7E+02 0.0037 22.5 8.1 44 191-234 54-98 (104)
159 TIGR02451 anti_sig_ChrR anti-s 40.0 97 0.0021 27.7 6.5 68 31-114 129-198 (215)
160 COG3837 Uncharacterized conser 39.9 1.6E+02 0.0036 24.7 7.1 55 26-89 32-95 (161)
161 PLN02370 acyl-ACP thioesterase 39.3 1.4E+02 0.003 29.7 7.9 55 184-238 196-252 (419)
162 TIGR03404 bicupin_oxalic bicup 38.9 64 0.0014 31.5 5.5 53 32-88 70-122 (367)
163 KOG0641 WD40 repeat protein [G 38.7 39 0.00086 30.1 3.6 38 383-420 79-116 (350)
164 PF12973 Cupin_7: ChrR Cupin-l 38.4 1.4E+02 0.0031 22.2 6.3 64 30-109 25-88 (91)
165 PF01643 Acyl-ACP_TE: Acyl-ACP 37.1 1.5E+02 0.0033 27.2 7.5 56 185-240 61-118 (261)
166 PRK13264 3-hydroxyanthranilate 36.1 99 0.0021 26.7 5.5 60 47-114 52-111 (177)
167 PF00190 Cupin_1: Cupin; Inte 34.8 57 0.0012 26.9 3.9 65 33-102 38-107 (144)
168 cd01289 FabA_like Domain of un 34.5 1.2E+02 0.0025 24.9 5.7 46 367-413 85-132 (138)
169 PRK13188 bifunctional UDP-3-O- 33.8 1.4E+02 0.003 30.2 6.9 51 367-418 409-460 (464)
170 PF01643 Acyl-ACP_TE: Acyl-ACP 33.4 1.3E+02 0.0028 27.7 6.5 57 365-421 65-122 (261)
171 cd03450 NodN NodN (nodulation 31.5 3E+02 0.0066 22.8 9.2 52 160-211 55-111 (149)
172 PLN02370 acyl-ACP thioesterase 31.3 2.1E+02 0.0045 28.5 7.7 58 362-419 198-256 (419)
173 PRK10694 acyl-CoA esterase; Pr 31.1 92 0.002 25.4 4.5 36 367-402 61-96 (133)
174 PRK11563 bifunctional aldehyde 31.0 2.6E+02 0.0055 29.9 8.9 78 161-238 585-671 (675)
175 KOG2763 Acyl-CoA thioesterase 31.0 5E+02 0.011 25.2 11.8 53 191-243 68-127 (357)
176 PF10144 SMP_2: Bacterial viru 30.5 46 0.001 29.6 2.8 32 387-418 79-110 (210)
177 KOG0664 Nemo-like MAPK-related 29.3 25 0.00053 32.5 0.8 20 204-223 68-87 (449)
178 PF14765 PS-DH: Polyketide syn 29.0 1.5E+02 0.0033 27.3 6.3 52 367-418 236-288 (295)
179 PRK11171 hypothetical protein; 29.0 1.5E+02 0.0033 27.4 6.1 49 30-87 185-234 (266)
180 TIGR00189 tesB acyl-CoA thioes 28.5 1.6E+02 0.0034 27.1 6.2 47 365-412 48-94 (271)
181 COG5301 Phage-related tail fib 28.5 90 0.002 31.2 4.5 38 375-412 68-105 (587)
182 TIGR03404 bicupin_oxalic bicup 28.0 1.3E+02 0.0029 29.3 5.7 82 32-118 248-331 (367)
183 PRK11171 hypothetical protein; 27.2 2.8E+02 0.0061 25.7 7.5 69 33-111 65-135 (266)
184 TIGR02278 PaaN-DH phenylacetic 26.9 1.5E+02 0.0033 31.6 6.3 52 367-418 605-662 (663)
185 PRK11563 bifunctional aldehyde 25.3 1.7E+02 0.0037 31.3 6.4 52 367-418 617-674 (675)
186 PF11699 CENP-C_C: Mif2/CENP-C 25.2 1.2E+02 0.0027 22.6 3.9 29 49-86 33-61 (85)
187 PF09142 TruB_C: tRNA Pseudour 24.4 89 0.0019 21.2 2.7 17 397-413 28-44 (56)
188 PRK11246 hypothetical protein; 23.9 74 0.0016 28.3 2.8 31 387-417 79-109 (218)
189 PF06775 Seipin: Putative adip 23.5 1.2E+02 0.0027 26.6 4.2 32 390-421 75-106 (199)
190 PRK10526 acyl-CoA thioesterase 23.3 2E+02 0.0043 27.0 5.8 49 187-235 226-277 (286)
191 KOG0283 WD40 repeat-containing 23.2 74 0.0016 33.6 3.1 33 392-424 266-298 (712)
192 PF04962 KduI: KduI/IolB famil 23.1 99 0.0022 28.6 3.6 76 31-113 29-108 (261)
193 PRK04190 glucose-6-phosphate i 23.0 3.5E+02 0.0076 23.7 6.8 34 49-86 97-130 (191)
194 PF13752 DUF4165: Domain of un 22.7 2.4E+02 0.0053 22.7 5.2 44 374-417 76-119 (124)
195 KOG2394 WD40 protein DMR-N9 [G 22.3 71 0.0015 32.3 2.6 36 374-419 281-316 (636)
196 PF09157 TruB-C_2: Pseudouridi 21.5 86 0.0019 21.1 2.2 24 397-420 30-55 (58)
197 PF07676 PD40: WD40-like Beta 21.2 1.5E+02 0.0034 17.7 3.2 24 391-414 6-29 (39)
198 PF11974 MG1: Alpha-2-macroglo 21.0 1.6E+02 0.0034 22.5 3.8 34 202-235 13-48 (97)
199 PRK09943 DNA-binding transcrip 20.1 2.8E+02 0.0062 23.8 5.8 54 48-111 127-180 (185)
No 1
>PLN02868 acyl-CoA thioesterase family protein
Probab=100.00 E-value=1e-76 Score=584.58 Aligned_cols=413 Identities=77% Similarity=1.269 Sum_probs=370.8
Q ss_pred CChhHHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEe
Q 040957 1 MDPDEVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQL 80 (430)
Q Consensus 1 M~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~ 80 (430)
|+.+++.++|+++++|+.|+++++..|+..++.++|++|++|+++|+..+++|+|++|.++++ ..+.+| + .++..+
T Consensus 1 ~~~~~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~--~~~~~g-e-~~l~~l 76 (413)
T PLN02868 1 MNTESVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVS--GPAEEE-S-RPEFLL 76 (413)
T ss_pred CCHHHHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEE--EECCCC-c-EEEEEe
Confidence 788899999999999999999999999999999999999999999999999999999999999 665555 4 788999
Q ss_pred ccCCeeccCCCCCcceeeEEEecceEEEEeccccccccccccccccccccCcccchhhhcccCccccceeecccCCCCCC
Q 040957 81 KRYDYFGHGSPTIFRQGDVIALTELTCLVLPHEHCNWLETKSIWSADKTVGTCSLVENILHLEPVEVNIFQGITLPDAPK 160 (430)
Q Consensus 81 ~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~f~~~~~~~~~~ 160 (430)
++|++||+.+.+.++.++++|.++|+++.|+++.|..+...++|.+++....++.+++.++++++++++|++...+.|++
T Consensus 77 ~~Gd~fG~~l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~f~~~~~~~~~~ 156 (413)
T PLN02868 77 KRYDYFGYGLSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSDKTPKDCSLVERILHLEPLEVDIFRGITLPDAPT 156 (413)
T ss_pred CCCCEeehhhCCCCcccEEEECCCEEEEEEcHHHHhhhcccccccccCChhhHHHHHhhcCcEeccCCeEECCcCCCCcc
Confidence 99999997677788999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEEEeccc
Q 040957 161 FGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASFQK 240 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~~sf~~ 240 (430)
++++|||+++|||+.||.+++++++.|||+|+||+++++++.|++|+|++||+||||++|+|+++|+|+++++++++|++
T Consensus 157 ~~~~fGG~~~aqal~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q~g~~~~~~~~sf~~ 236 (413)
T PLN02868 157 FGKVFGGQLVGQALAAASKTVDPLKLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQKGKVIFTLFASFQK 236 (413)
T ss_pred cccccchHHHHHHHHHHHccCCCCCCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEECCeeEEEEeecccc
Confidence 78999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCccCCCCCCCCCCCCCHHHHHHhhcCCCCCchhhHhhhhccCCCCCCeEEEEcCCCCCCCCCCCCCeeEEEEe
Q 040957 241 EEQGFEHQETTMPLVPAPEMLLSMEELRERRLTDPRLPRSYRNKVASKEFVPWPIDIRFCEPNSYTNQSKSPPSLRYWFR 320 (430)
Q Consensus 241 ~~~~~~~~~~~~p~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~W~R 320 (430)
.++++.|+..++|++|+||+|+...+.......++.++..+.+.+....+..++||+|++++..+.......++.+.|+|
T Consensus 237 ~~~~~~~~~~~~p~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~~~~~~~~~~~~~~~W~R 316 (413)
T PLN02868 237 EEQGFEHQESTMPHVPPPETLLSREELRERRLTDPRLPRSYRNKVAAKPFVPWPIEIRFCEPNNSTNQTKSPPRLRYWFR 316 (413)
T ss_pred CCCCcccccCCCCCCcCcccCcCHHHHHHhhccccccCHHHHHHhhhcccCCCCCEEEEcCCccccCCCCCCceEEEEEE
Confidence 98888888877899999999988777655443333344433332221223345799999998766654444577889999
Q ss_pred cCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEE
Q 040957 321 AKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEM 400 (430)
Q Consensus 321 ~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i 400 (430)
.++++++|+.+|.++|||+||.+++.++++||.....+...+||||+||||++++.++|++++++++++++||++++|+|
T Consensus 317 ~~~~~~~d~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l 396 (413)
T PLN02868 317 AKGKLSDDQALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHM 396 (413)
T ss_pred ECCCCCCCHHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEE
Confidence 99999999999999999999999999999998664444568999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEecccee
Q 040957 401 FNTKGELLVSLTQEALL 417 (430)
Q Consensus 401 ~~~~G~lvA~~~Q~~l~ 417 (430)
||++|+||||++||||+
T Consensus 397 ~~~~G~LvAs~~Qe~l~ 413 (413)
T PLN02868 397 FNRKGELVVSLTQEALL 413 (413)
T ss_pred ECCCCCEEEEEEeeecC
Confidence 99999999999999986
No 2
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=100.00 E-value=1e-64 Score=451.16 Aligned_cols=281 Identities=48% Similarity=0.772 Sum_probs=253.0
Q ss_pred ccchhhhcccCccccceeecccCCCCCCCceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEee
Q 040957 133 CSLVENILHLEPVEVNIFQGITLPDAPKFGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRVR 212 (430)
Q Consensus 133 ~~~l~~~l~l~~~~~~~f~~~~~~~~~~~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr 212 (430)
+..++..+++++++++.|++..+.. ++..+|||+++|||+.||.+||++++.+||+|+||++||++..||.|+|+++|
T Consensus 5 m~~l~~iL~Le~le~~lfrG~s~~~--g~~~vFGGqvvaQAL~Aa~~TV~~~r~vhSlh~yFl~pgd~~~pi~y~Ve~lR 82 (289)
T COG1946 5 MNNLLAILDLERLESNLFRGSSPDS--GLRRVFGGQVVAQALVAALRTVPEDRVVHSLHSYFLRPGDPEQPIIYDVERLR 82 (289)
T ss_pred hHHHHHHhhcccccccceecCCCCc--CCccccccchHHHHHHHHHhhcCCCCCcceehhhhcCCCCcCCceEEEEEecc
Confidence 4678899999999999999999864 67799999999999999999999999999999999999999999999999999
Q ss_pred eCCCeeEEEEEEEECCeeEEEEEEeccccCCCcccCccCCCCCCCCCCCCCHHHHHHhhcCCCCCchhhHhhhhccCCCC
Q 040957 213 DGNSFATRRVDAIQKGNIIFTLLASFQKEEQGFEHQETTMPLVPAPEMLLSMEELRERRLTDPRLPRSYRNKVASKEFVP 292 (430)
Q Consensus 213 ~Gr~~s~~~V~~~Q~g~~~~~~~~sf~~~~~~~~~~~~~~p~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (430)
+||+|++|+|+++|+|++||++++||+..+.+.+|+.. ||++|+||.++.-.+..+.+. +..|...+..+.. .
T Consensus 83 dG~sfs~rrV~aiQ~g~~If~~~ASF~~~e~g~eHq~~-mP~vp~Pe~~~~~~~~~~~~~--~~~p~~~~~~~~~----~ 155 (289)
T COG1946 83 DGRSFSTRRVDAIQHGKLIFSATASFQVPEEGFEHQET-MPAVPPPEGLPSETQIAQKLL--PHLPEIVRAKFEL----E 155 (289)
T ss_pred CCCceEeEEEEEEECCEEEEEEEeeccCCCCCchhhhc-CCCCCCCccCcchhHHHHhhh--hhcchhhhhhhcc----c
Confidence 99999999999999999999999999999999999988 899999999988655554433 2355554444332 4
Q ss_pred CCeEEEEcCCCCCCCCCCCCCeeEEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccC--CCcceeeecceeeec
Q 040957 293 WPIDIRFCEPNSYTNQSKSPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRK--GFRTASLSLDHSMWF 370 (430)
Q Consensus 293 ~~~e~r~~~~~~~~~~~~~~~~~~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~--~~~~~~~sld~si~f 370 (430)
.++|+|++....+.......+...+|+|.++.+|+|+.+|.++|||+||+.++.+++.||+.. .....++||||+|||
T Consensus 156 ~pie~R~~~~~~~~~~~k~~~~~~vWira~~~~pdd~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wF 235 (289)
T COG1946 156 RPIEIRPVNLTNPFSGDKSSPQQQVWIRARGELPDDPRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWF 235 (289)
T ss_pred cceeEEecccCCccccccCCcceeEEEEcCCCCCCCHHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEE
Confidence 679999999988877566678899999999999999999999999999999999999999854 345679999999999
Q ss_pred cCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccCCC
Q 040957 371 HRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSPKP 422 (430)
Q Consensus 371 ~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~~~ 422 (430)
|+|++.|+|+||..+++.+++||++++|+|||+||+|||++.|||++|..+.
T Consensus 236 hrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf~r~G~LiA~~~QEG~~r~~~~ 287 (289)
T COG1946 236 HRPFRLDDWLLYAQESPSASGGRGLVRGQLFDRDGQLIASVVQEGLIRYHRA 287 (289)
T ss_pred eccccCCCEEEEEeeCCcccCCcceeeeEEEcCCCCEEEEEeeeEEEeccCC
Confidence 9999999999999999999999999999999999999999999999998763
No 3
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=100.00 E-value=5.4e-60 Score=441.38 Aligned_cols=279 Identities=43% Similarity=0.696 Sum_probs=240.5
Q ss_pred ccchhhhcccCccccceeecccCCCCCCCceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEee
Q 040957 133 CSLVENILHLEPVEVNIFQGITLPDAPKFGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRVR 212 (430)
Q Consensus 133 ~~~l~~~l~l~~~~~~~f~~~~~~~~~~~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr 212 (430)
+..+.++++++++++++|++...+ ..++++|||+++|||+.||.+++++++.+||+|+||++|++++.|++|+|++||
T Consensus 5 ~~~l~~~l~l~~~~~~~f~g~~~~--~~~r~~fGGqv~AQal~AA~~tv~~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lR 82 (286)
T PRK10526 5 LKNLLTLLNLEKIEEGLFRGQSED--LGLRQVFGGQVVGQALYAAKETVPEERLVHSFHSYFLRPGDSQKPIIYDVETLR 82 (286)
T ss_pred HHHHHHhcCcEEccCCeEECcCCC--CCCCceechHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCCEEEEEEEEe
Confidence 356888999999999999999876 346799999999999999999999999999999999999999999999999999
Q ss_pred eCCCeeEEEEEEEECCeeEEEEEEeccccCCCcccCccCCCCCCCCCCCCCHHHHHHhhcCCCCCchhhHhhhhccCCCC
Q 040957 213 DGNSFATRRVDAIQKGNIIFTLLASFQKEEQGFEHQETTMPLVPAPEMLLSMEELRERRLTDPRLPRSYRNKVASKEFVP 292 (430)
Q Consensus 213 ~Gr~~s~~~V~~~Q~g~~~~~~~~sf~~~~~~~~~~~~~~p~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (430)
+||||++|+|+++|+|+++|++++||+..+++++|+.. +|++|+||+|+...+...... ..++......+. ..
T Consensus 83 dGRSfstr~V~a~Q~g~~if~~~~sF~~~e~~~~h~~~-~p~~p~Pe~l~~~~~~~~~~~--~~~~~~~~~~~~----~~ 155 (286)
T PRK10526 83 DGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKT-MPSAPAPDGLPSETDIAQSLA--HLLPPVLKDKFI----CD 155 (286)
T ss_pred CCCceEeEEEEEEECCEEEEEEEEEeccCCCCcccccC-CCCCcCccccCChHHHHHhhh--hhcCHhHHhhhc----cC
Confidence 99999999999999999999999999988888988765 899999999988766533221 113333222211 13
Q ss_pred CCeEEEEcCCCCCCCCCCCCCeeEEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccC--CCcceeeecceeeec
Q 040957 293 WPIDIRFCEPNSYTNQSKSPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRK--GFRTASLSLDHSMWF 370 (430)
Q Consensus 293 ~~~e~r~~~~~~~~~~~~~~~~~~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~--~~~~~~~sld~si~f 370 (430)
.+||+|++.+..+.......++...|+|.++++++|+.+|.++|+|+||+.++++++.||... .....++||||+|||
T Consensus 156 ~~~e~r~~~~~~~~~~~~~~~~~~~W~R~~~~~~~d~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~F 235 (286)
T PRK10526 156 RPLEIRPVEFHNPLKGHVAEPVRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWF 235 (286)
T ss_pred CCcEEEecCCcCccCCCCCCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEE
Confidence 469999998876654334457788999999888999999999999999999999999998654 223567899999999
Q ss_pred cCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccC
Q 040957 371 HRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSP 420 (430)
Q Consensus 371 ~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~ 420 (430)
|++++.++|++++++++++++||++.+|+|||+||+|||+++||||+|.+
T Consensus 236 h~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~~G~LvAs~~Qegl~r~~ 285 (286)
T PRK10526 236 HRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNH 285 (286)
T ss_pred eCCCCCCceEEEEEECCcccCCceEEEEEEECCCCCEEEEEEeeEEEEec
Confidence 99999999999999999999999999999999999999999999999975
No 4
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=100.00 E-value=6.4e-56 Score=392.31 Aligned_cols=278 Identities=49% Similarity=0.820 Sum_probs=234.3
Q ss_pred cchhhhcccCccccceeecccCCCC--CCCceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEe
Q 040957 134 SLVENILHLEPVEVNIFQGITLPDA--PKFGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRV 211 (430)
Q Consensus 134 ~~l~~~l~l~~~~~~~f~~~~~~~~--~~~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~l 211 (430)
..+...+++++++++.|+++..+.. -...++|||+++||||+||..||++++.|||+||||++.|+++.||.|.|+++
T Consensus 8 ~li~~~l~l~~lD~n~f~~~~l~~g~~~~~~~~fGG~i~sQaLaAA~~TV~e~f~p~SlH~YFI~~gd~~~pI~Y~V~ri 87 (294)
T KOG3016|consen 8 GLIDTFLNLERLDKNLYLTRHLPKGREIPSNHAYGGQIASQALAAASKTVEEMFIPHSLHCYFILVGDPNIPIIYDVKRI 87 (294)
T ss_pred HHHHHhheeeecCCCceecccCCccccccCcccccceehHHHHHHHHhccccccccceeeeeeeecCCCCCceEEEeeee
Confidence 4567788999999999999999853 24568999999999999999999999999999999999999999999999999
Q ss_pred eeCCCeeEEEEEEEECCeeEEEEEEeccccC-CCcccCccCCCCCCCCCCCCCHHHHHHh-hcCCCCCchhhHhhhhcc-
Q 040957 212 RDGNSFATRRVDAIQKGNIIFTLLASFQKEE-QGFEHQETTMPLVPAPEMLLSMEELRER-RLTDPRLPRSYRNKVASK- 288 (430)
Q Consensus 212 r~Gr~~s~~~V~~~Q~g~~~~~~~~sf~~~~-~~~~~~~~~~p~~p~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 288 (430)
|+||+|++|.|+++|+||+||++.+||+..+ +...|+.. ||.+|+|+++....+.... ....+ ++.....+...
T Consensus 88 rdGr~F~~R~V~AvQ~~k~If~~qiSF~~~~ks~~~h~~e-~P~v~~~e~ll~~~~~~~~~~~~~~--~~a~~~~~q~~~ 164 (294)
T KOG3016|consen 88 RDGRNFATRSVDAVQKGKTIFTLQISFQQSEKSSIIHQCE-MPEVPPPESLLDRNDAAIEISVPFP--PPAMLARLQVKD 164 (294)
T ss_pred cCCceeEEEEEEEEECCeEEEEEEEEEccccCCCccccCC-CCCCCCchhhcCHHHHHHHhhccCC--cchhhhhhhhhh
Confidence 9999999999999999999999999999764 44557766 9999999887665543322 22211 11111111100
Q ss_pred ---CCCCCCeEEEEcCCCCCCCCCCCCCeeEEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecc
Q 040957 289 ---EFVPWPIDIRFCEPNSYTNQSKSPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLD 365 (430)
Q Consensus 289 ---~~~~~~~e~r~~~~~~~~~~~~~~~~~~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld 365 (430)
.....-||+|+++..........++....|+|.+..+++|..+|.+++||+||..++.+++.||...+....+.|||
T Consensus 165 ~e~~~~~~~fdiRp~~~~~~~~~~~~~~k~~~wir~r~~~~~D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLd 244 (294)
T KOG3016|consen 165 KEIPSKQDLFDIRPTNPNRYLKQNKDPPKSYFWIRARENLRCDERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLD 244 (294)
T ss_pred hccccccceeeeeeccccccccccCCchheeeEeecccccCchhhhceehHhhhhhHHHHHhcccchhhccceeeecccc
Confidence 00122389999998877665666778899999999998999999999999999999999999998877667889999
Q ss_pred eeeeccCC-CCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecc
Q 040957 366 HSMWFHRS-FRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQE 414 (430)
Q Consensus 366 ~si~f~~~-~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~ 414 (430)
|+||||++ +++++|+++++.|+.++++|++++|++|++||+|++++.||
T Consensus 245 HsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw~rdG~l~~s~~qe 294 (294)
T KOG3016|consen 245 HSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLWNRDGRLICSTEQE 294 (294)
T ss_pred eeEEEecccccccceEEEEEEeccccCcceeEeeeEEccCCcEEEEeccC
Confidence 99999995 89999999999999999999999999999999999999997
No 5
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=100.00 E-value=2.2e-52 Score=390.89 Aligned_cols=268 Identities=50% Similarity=0.819 Sum_probs=224.6
Q ss_pred CccccceeecccCCCCCC-CceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEE
Q 040957 143 EPVEVNIFQGITLPDAPK-FGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRR 221 (430)
Q Consensus 143 ~~~~~~~f~~~~~~~~~~-~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~ 221 (430)
++++++.|++...+..+. .+++|||+++|||+.||.+++++++.|||+|+||++|+.++.|++|+|++||+|||+++|+
T Consensus 1 ~~~~~~~f~~~~~~~~~~~~~~~fGG~~~Aqal~Aa~~tv~~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~ 80 (271)
T TIGR00189 1 EKIDENLFRGSHLSKGRRFYNRVFGGQVVGQALAAASKTVPEEFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRR 80 (271)
T ss_pred CcccCCeEECcCCCCCCcCCCceEccHHHHHHHHHHHhcCCCCCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEE
Confidence 467899999999876432 2589999999999999999999899999999999999999999999999999999999999
Q ss_pred EEEEECCeeEEEEEEeccccCCCcccCccCCCCCCCCC-CCCCHHHHHHhhcCCCCCchhhHhhhhccCCCCCCeEEEEc
Q 040957 222 VDAIQKGNIIFTLLASFQKEEQGFEHQETTMPLVPAPE-MLLSMEELRERRLTDPRLPRSYRNKVASKEFVPWPIDIRFC 300 (430)
Q Consensus 222 V~~~Q~g~~~~~~~~sf~~~~~~~~~~~~~~p~~p~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~ 300 (430)
|+++|+|+++++++++|+..++++.++.. +|++|+|+ +++........+.. ..+......+ . ...++|+|++
T Consensus 81 V~~~Q~g~~~~~a~asf~~~~~~~~~~~~-~P~~p~Pe~~~~~~~~~~~~~~~--~~~~~~~~~~---p-~~~~~d~r~~ 153 (271)
T TIGR00189 81 VKAVQHGKTIFTLQASFQAEESGIEHQST-MPKVPAPESELPRENQLATKYPA--TLPRFLKHVV---P-FERPFEIRPV 153 (271)
T ss_pred EEEEECCEEEEEEEEEcccCCCCcccccC-CCCCCCcccccCCHHHHHHhhhh--hhhHHHHhcc---c-cCCCeEEEeC
Confidence 99999999999999999977777777644 88999999 88776543221100 0111111000 1 1356999998
Q ss_pred CCCCCCCCCCCCCeeEEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccCC-CcceeeecceeeeccCCCCCCCe
Q 040957 301 EPNSYTNQSKSPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKG-FRTASLSLDHSMWFHRSFRADDW 379 (430)
Q Consensus 301 ~~~~~~~~~~~~~~~~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~~-~~~~~~sld~si~f~~~~~~~~W 379 (430)
++..+.. +.+.++..+|+|.++++++|+.++.++|+|+||.+++++++.++.... .....+||||+||||++++.++|
T Consensus 154 ~~~~~~~-~~~~~~~~~W~R~~~~l~~d~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W 232 (271)
T TIGR00189 154 NLLNYLG-GKEDPPQYVWRRARGSLPDDPRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDW 232 (271)
T ss_pred CcccccC-CCCCceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCee
Confidence 8876554 334567889999999998899999999999999988899998887654 23567899999999998899999
Q ss_pred EEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceec
Q 040957 380 LLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLR 418 (430)
Q Consensus 380 ~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r 418 (430)
+++++++.++++||++++++|||++|+|||+++||||+|
T Consensus 233 ~l~~~~s~~~~~Grg~~~~~l~d~~G~lvAs~~Qe~l~r 271 (271)
T TIGR00189 233 LLYKCSSPSASGSRGLVEGKIFTRDGVLIASTVQEGLVR 271 (271)
T ss_pred EEEEEEeccccCCceEEEEEEECCCCCEEEEEEeeeecC
Confidence 999999999999999999999999999999999999987
No 6
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=100.00 E-value=1.8e-38 Score=294.84 Aligned_cols=239 Identities=32% Similarity=0.473 Sum_probs=167.6
Q ss_pred CCCC-CceeehhHHHHHHHHHHhccC--CCCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEE
Q 040957 157 DAPK-FGKVFGGQLVGQALAAASKTV--DCLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFT 233 (430)
Q Consensus 157 ~~~~-~~~~~GG~~~a~al~Aa~~~~--~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~ 233 (430)
.|+. ++.+||| ++|+++.+|.+++ ++++.++|+|++|++|+.++ |++|+|+.+|+||++++++|+++|+|+++++
T Consensus 4 ~W~~~g~~~~GG-~~a~~~~~A~~~~~~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q~~~~~~~ 81 (255)
T PF13622_consen 4 PWCPNGRVVHGG-YLAQLLAAAARTHAPPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQDGKVVAT 81 (255)
T ss_dssp GGEC-TTCE-HH-HHHHHHHHHHHHCHTTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEETTEEEEE
T ss_pred cccCCCCcChhH-HHHHHHHHHHHHhccCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEECCcCEEE
Confidence 4566 7789999 5555555665666 55789999999999999997 9999999999999999999999999999999
Q ss_pred EEEeccccCCCc------ccCccCCCCCCCCCCCCCHHHHHHhhcCCCCCchhhHhhhhccCCCCCCeEEEEcCCCCCC-
Q 040957 234 LLASFQKEEQGF------EHQETTMPLVPAPEMLLSMEELRERRLTDPRLPRSYRNKVASKEFVPWPIDIRFCEPNSYT- 306 (430)
Q Consensus 234 ~~~sf~~~~~~~------~~~~~~~p~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~~~~~- 306 (430)
++++|++.+.+. .....++|.+|+|++|........ . .+. ......+|+|++.+..+.
T Consensus 82 a~~~f~~~~~~~~~~~~~~~~~~~~p~~p~p~~~~~~~~~~~-----~-~~~---------~~~~~~~e~R~~~~~~~~~ 146 (255)
T PF13622_consen 82 ATASFGRPEPGPPEPDLPSSLPPPPPPVPPPDDCPPQDDFPD-----G-VPP---------PGFIQFFEMRPVDGAPPNS 146 (255)
T ss_dssp EEEEEE--TTT--------CEES------BGGGSCBGGGCGG-----S-SCC---------CSCGGCEEEEECSCCHHHH
T ss_pred EEEEEccCcCCcccccccccccCCCCCCCChhhccccccccc-----c-ccc---------cccccceEEEecCCCcccc
Confidence 999999986553 233344666777888765542110 0 000 000123899999875421
Q ss_pred --CCCCCCCeeEEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccC-CCCCCCeEEeE
Q 040957 307 --NQSKSPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHR-SFRADDWLLFV 383 (430)
Q Consensus 307 --~~~~~~~~~~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~-~~~~~~W~l~~ 383 (430)
..+.+.++...|+|++++.+.+ +.+.|+|++|.+ .+..+..+... .....+||||+||||. |.+.++|++++
T Consensus 147 ~~~~~~~~~~~~~W~R~~~~~~~~---~~~~l~~~~D~~-~~~~~~~~~~~-~~~~~~tld~ti~f~~~p~~~~~Wl~~~ 221 (255)
T PF13622_consen 147 TSGSPGGPPELRGWIRLRDPLPDG---DFAALAFLSDAF-PPATLRAFSGP-EWWFPATLDHTIHFHRLPFDGDEWLLLE 221 (255)
T ss_dssp CTTST-SSSEEEEEEEESTTT-CT---HHHHHHHHCTCC-HHHHHHCHTSS---B-EEEEEEEEEECSHCCTTTS-EEEE
T ss_pred cccCCCCCceEEEEEEeCCCcccc---hHHHHHHHHHhc-chhhccccCCc-cccccccceeEEEEEeCCccCCceEEEE
Confidence 2255677899999999776542 456799999987 33333332111 0134569999999876 67789999999
Q ss_pred EeecceeCCeeeEEEEEEccCCCEEEEEecccee
Q 040957 384 IVSPVASKARGFVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 384 ~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
+++.++++||++.+++|||++|+|||+++|+++|
T Consensus 222 ~~~~~~~~Gr~~~~~~l~d~~G~lvA~~~Q~~lv 255 (255)
T PF13622_consen 222 ARSPRAGNGRALMEGRLWDEDGRLVASSRQEALV 255 (255)
T ss_dssp EEEEEEETTEEEEEEEEEETTS-EEEEEEEEEE-
T ss_pred EEEeEeCCCEEEEEEEEECCCCCEEEEEEEEeeC
Confidence 9999999999999999999999999999999986
No 7
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=99.95 E-value=4.2e-29 Score=197.77 Aligned_cols=123 Identities=45% Similarity=0.726 Sum_probs=101.5
Q ss_pred CCCeEEEEcCCCCCCCCCCCCCeeEEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeecc
Q 040957 292 PWPIDIRFCEPNSYTNQSKSPPSLRYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFH 371 (430)
Q Consensus 292 ~~~~e~r~~~~~~~~~~~~~~~~~~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~ 371 (430)
..++++|++....++.+...+ ....|+|.++.+|+|+.+|.++|||+||+.++.+++.||++......+ ||||+||||
T Consensus 8 e~~~~~rp~~~~~~~~g~~~~-~~~vW~ra~~~~p~d~~~h~~~laY~SD~~~L~tal~~H~~~~~~~~v-SlDHs~wFH 85 (131)
T PF02551_consen 8 ERPIEIRPVWLMNPFGGQVLE-HQQVWVRANGILPDDPRIHSCALAYASDFTLLDTALQPHGFGFPKFQV-SLDHSMWFH 85 (131)
T ss_dssp TCCEEEECSCCSBCCCHHHHH-EECCCCCCCSTS-TTHCCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEE-EEEEEEEE-
T ss_pred ccccccCcccccCCCCCeEeh-hhhhhHHhCCCCCCchhHhHHHHHHHhHHhHHHhhhccccccccccEE-ecceeEEEc
Confidence 356899987655444311122 678999999999999999999999999999999999999943333445 999999999
Q ss_pred CCCCCCCeEEeEEeecceeCCeeeEEEEEE-ccCCCEEEEEeccce
Q 040957 372 RSFRADDWLLFVIVSPVASKARGFVSGEMF-NTKGELLVSLTQEAL 416 (430)
Q Consensus 372 ~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~-~~~G~lvA~~~Q~~l 416 (430)
+|++.++|++|+.+++.+++||++.+|++| +++|+||||+.||||
T Consensus 86 rpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lvas~~QEGl 131 (131)
T PF02551_consen 86 RPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVASVVQEGL 131 (131)
T ss_dssp S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEEEEecCCC
Confidence 999999999999999999999999999999 999999999999996
No 8
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.92 E-value=6.5e-25 Score=173.21 Aligned_cols=102 Identities=49% Similarity=0.858 Sum_probs=93.8
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccCC-CcceeeecceeeeccCCCCCCCeEEeEEeecceeCCee
Q 040957 316 RYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKG-FRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARG 394 (430)
Q Consensus 316 ~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~~-~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~ 394 (430)
..|+|.++++++++.+|.++|||+||.+++.+++.+++... ....++||||+||||++.+.++|++++.+++++++||+
T Consensus 2 ~~W~R~~~~~~~d~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~ 81 (104)
T cd03444 2 RVWVRARGPLPDDPRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRG 81 (104)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCee
Confidence 47999999888899999999999999999999999986543 34568999999999998777899999999999999999
Q ss_pred eEEEEEEccCCCEEEEEecccee
Q 040957 395 FVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 395 ~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
+.+++|||++|+|||++.|||++
T Consensus 82 ~~~~~l~~~~G~LvAs~~Q~~l~ 104 (104)
T cd03444 82 LVEGRIFTRDGELVASVAQEGLL 104 (104)
T ss_pred EEEEEEECCCCCEEEEEEEeeeC
Confidence 99999999999999999999985
No 9
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.89 E-value=1.1e-22 Score=157.16 Aligned_cols=93 Identities=54% Similarity=0.844 Sum_probs=85.2
Q ss_pred ceeecccCCCCC-CCceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE
Q 040957 148 NIFQGITLPDAP-KFGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ 226 (430)
Q Consensus 148 ~~f~~~~~~~~~-~~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q 226 (430)
++|++..++..+ .++.+|||+++||++.||.+++++++.++|+|++|++|+.++.|++|+|+.||+|||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~l~a~a~~Aa~~~~~~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q 80 (94)
T cd03445 1 DRFRGVSPPVPPGQGRGVFGGQVLAQALVAAARTVPDDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQ 80 (94)
T ss_pred CeEECccCCCCCCCCCceEHHHHHHHHHHHHHhhCCCCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEE
Confidence 457777776544 4679999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeccc
Q 040957 227 KGNIIFTLLASFQK 240 (430)
Q Consensus 227 ~g~~~~~~~~sf~~ 240 (430)
+|+++++++++|++
T Consensus 81 ~g~~~~~a~~sf~~ 94 (94)
T cd03445 81 NGKVIFTATASFQR 94 (94)
T ss_pred CCEEEEEEEEEEeC
Confidence 99999999999963
No 10
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.58 E-value=1.7e-14 Score=113.37 Aligned_cols=98 Identities=36% Similarity=0.587 Sum_probs=86.7
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeee
Q 040957 316 RYWFRAKGKLSDDQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGF 395 (430)
Q Consensus 316 ~~W~R~~~~~~~~~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~ 395 (430)
..|+|.+++.+.+..+|-..+++++|..+...+..++. ....+|+||+++||+|...++|++++.++.+.+++++.
T Consensus 2 ~~~~r~~~~~~~~~~~hgg~la~l~D~a~~~~~~~~~~----~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~ 77 (99)
T cd00556 2 RFWGRAPGPLPDDRRVFGGQLAAQSDLAALRTVPRPHG----ASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRAL 77 (99)
T ss_pred cEEEEcCCCCCcCHHHHHHHHHHHHHHHHHhhhhcccC----CCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceE
Confidence 47999998887788899999999999987766665553 23468999999999988889999999999999999999
Q ss_pred EEEEEEccCCCEEEEEecccee
Q 040957 396 VSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 396 ~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
.++++|+++|++||++.|+.++
T Consensus 78 ~~~~i~~~~G~lva~~~~~~~~ 99 (99)
T cd00556 78 RRGRAYQRDGKLVASATQSFLV 99 (99)
T ss_pred EEEEEECCCCcEEEEEEEeEcC
Confidence 9999999999999999999864
No 11
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.55 E-value=2.3e-14 Score=131.35 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=101.3
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCee
Q 040957 7 IEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYF 86 (430)
Q Consensus 7 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~f 86 (430)
.++|+.+++|..|+++++..+...++.++|++|++|+++|+.++++|+|++|.++++ ... +|++ .++.++.+|++|
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~--~~~-~~~~-~~i~~~~~g~~~ 81 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELS--ASS-QDRE-TTLAILRPVSTF 81 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEE--EcC-CCce-EEEEEeCCCchh
Confidence 468999999999999999999999999999999999999999999999999999999 654 5555 789999999999
Q ss_pred ccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 87 GHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 87 Ge~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
|+. +.+.++.++++|.++|.++.|+++.|..+..
T Consensus 82 g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~ 117 (236)
T PRK09392 82 ILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAMS 117 (236)
T ss_pred hhHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHH
Confidence 998 7788999999999999999999999877655
No 12
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.45 E-value=3.8e-13 Score=107.93 Aligned_cols=103 Identities=29% Similarity=0.372 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC--CCC
Q 040957 15 LLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG--SPT 92 (430)
Q Consensus 15 ~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~--~~~ 92 (430)
+|..++++++..+...++.+.|++|++|+.+|+..+++|+|.+|.++++ ....+|++ ..+..+.+|++||+. +.+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~--~~~~~g~~-~~~~~~~~g~~~g~~~~~~~ 77 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVY--KLDEDGRE-QIVGFLGPGDLFGELALLGN 77 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEE--EECCCCcE-EEEEecCCccCcChHHHhcC
Confidence 4788999999999999999999999999999999999999999999999 66667666 889999999999999 667
Q ss_pred CcceeeEEEecceEEEEecccccccccc
Q 040957 93 IFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 93 ~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
.++..+++|.++|.++.|+.+.|..+..
T Consensus 78 ~~~~~~~~a~~~~~~~~i~~~~~~~~~~ 105 (115)
T cd00038 78 GPRSATVRALTDSELLVLPRSDFRRLLQ 105 (115)
T ss_pred CCCCceEEEcCceEEEEEeHHHHHHHHH
Confidence 8899999999999999999998876654
No 13
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.44 E-value=5.4e-13 Score=120.07 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=92.2
Q ss_pred CCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC--CCC-
Q 040957 16 LQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG--SPT- 92 (430)
Q Consensus 16 f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~--~~~- 92 (430)
-+.++++++..+++.+..++|++|++|+.+|++++++|+|++|.++++ ..+.+|++ .++.++.+|++||+. +.+
T Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~--~~~~~g~~-~~~~~~~~g~~~g~~~~~~~~ 81 (211)
T PRK11753 5 GKPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVL--IKDEEGKE-MILSYLNQGDFIGELGLFEEG 81 (211)
T ss_pred cCCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEE--EECCCCCE-EEEEEcCCCCEEeehhhccCC
Confidence 356999999999999999999999999999999999999999999999 77767777 899999999999999 544
Q ss_pred CcceeeEEEecceEEEEecccccccccc
Q 040957 93 IFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 93 ~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
.++.++++|.++|.++.|+++.|..+..
T Consensus 82 ~~~~~~~~a~~~~~v~~i~~~~~~~l~~ 109 (211)
T PRK11753 82 QERSAWVRAKTACEVAEISYKKFRQLIQ 109 (211)
T ss_pred CCceEEEEEcCcEEEEEEcHHHHHHHHH
Confidence 4678899999999999999999877655
No 14
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=7.6e-13 Score=121.11 Aligned_cols=108 Identities=21% Similarity=0.196 Sum_probs=99.4
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCC
Q 040957 5 EVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYD 84 (430)
Q Consensus 5 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~ 84 (430)
.+.+++++.-+|.+|+++++.++.+.+..+.+++|+.|+.+|+.++++|+|-+|++.+| .. + ..+..+.+|.
T Consensus 119 ~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVy--v~----~--~~v~~~~~g~ 190 (368)
T KOG1113|consen 119 RLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVY--VN----G--TYVTTYSPGG 190 (368)
T ss_pred HHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEE--EC----C--eEEeeeCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999 33 2 3577899999
Q ss_pred eeccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 85 YFGHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 85 ~fGe~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
.|||+ +.+.||.+|+.|.+++.+|.+++..|..+.-
T Consensus 191 sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~ 228 (368)
T KOG1113|consen 191 SFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIM 228 (368)
T ss_pred chhhhHhhhCCCcccceeeccccceEEEeeceeEEEee
Confidence 99999 8999999999999999999999999876644
No 15
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.40 E-value=9.9e-13 Score=120.49 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=95.1
Q ss_pred hcCCCCCCCCCHHHHHHHHhhce-EEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeecc
Q 040957 10 LSCVPLLQRLPGSSLKRIADIVI-VKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGH 88 (430)
Q Consensus 10 l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe 88 (430)
+++.+.|..|++++++.|..... .+.|++|++|+.+||+++++|+|.+|.++++ ..+.+|++ .++.++.+|++||+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~--~~~~~G~e-~i~~~~~~gd~~g~ 91 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSY--TITEQGDE-QITGFHLAGDLVGF 91 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEE--EECCCCCE-EEEEeccCCceecc
Confidence 56666677899999999999886 5789999999999999999999999999999 77777777 89999999999999
Q ss_pred C-CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 89 G-SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 89 ~-~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
. +....+..+++|+++++++.|+++.|+.+..
T Consensus 92 ~~~~~~~~~~~~~a~~~~~i~~ip~~~f~~l~~ 124 (235)
T PRK11161 92 DAIGSGQHPSFAQALETSMVCEIPFETLDDLSG 124 (235)
T ss_pred ccccCCCCcceEEEeccEEEEEEEHHHHHHHHH
Confidence 8 6555667799999999999999998877655
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.38 E-value=2.4e-13 Score=129.90 Aligned_cols=115 Identities=30% Similarity=0.554 Sum_probs=105.6
Q ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccC
Q 040957 4 DEVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRY 83 (430)
Q Consensus 4 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G 83 (430)
+++.+||++.|+|.+|+++.+..+++.++...|.+|+.|+++|+.++.+|+|.+|.|++. ...+...++..+..+..|
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vt--q~~e~~~q~~~lr~l~kG 345 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVT--QQDEGSTQPQELRTLNKG 345 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEe--ecCCCCCchhHHhhcccc
Confidence 567899999999999999999999999999999999999999999999999999999999 665554555889999999
Q ss_pred CeeccC--CCCCcceeeEEEecc-eEEEEecccccccccc
Q 040957 84 DYFGHG--SPTIFRQGDVIALTE-LTCLVLPHEHCNWLET 120 (430)
Q Consensus 84 ~~fGe~--~~~~~~~~~v~A~~~-~~~l~i~~~~f~~l~~ 120 (430)
|+|||- +....|+++++|..+ +.|+.|+++.|..+..
T Consensus 346 d~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG 385 (732)
T KOG0614|consen 346 DYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIG 385 (732)
T ss_pred chhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcc
Confidence 999999 777889999999998 9999999999887766
No 17
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.36 E-value=4.4e-12 Score=102.29 Aligned_cols=103 Identities=27% Similarity=0.379 Sum_probs=91.1
Q ss_pred CCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC--C--
Q 040957 15 LLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG--S-- 90 (430)
Q Consensus 15 ~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~--~-- 90 (430)
+|.+++++.+..++..+..+.|++|++|+.+|++.+++|+|.+|.++++ ..+.+|++ ..+..+.+|++||+. +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~--~~~~~g~~-~~~~~~~~g~~~g~~~~~~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVY--KVLEDGRE-QILGILGPGDFFGELALLTN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEE--EECCCCce-EEEEeecCCceechhhhccC
Confidence 4788999999999999999999999999999999999999999999999 66666666 889999999999999 4
Q ss_pred CCCcceeeEEEecceEEEEecccccccccc
Q 040957 91 PTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 91 ~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
...+...++++.++|.++.++.+.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 107 (120)
T smart00100 78 SRRAASATAVALELATLLRIDFRDFLQLLQ 107 (120)
T ss_pred CCcccceEEEEEeeEEEEccCHHHHHHHHH
Confidence 345778899999999999999987665443
No 18
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.35 E-value=8.1e-13 Score=120.21 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=93.2
Q ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccC
Q 040957 4 DEVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRY 83 (430)
Q Consensus 4 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G 83 (430)
+++..++....+-.-++ ..+.+.+..+.|++|++|+.+|++++++|+|++|.|+++ ..+.+|++ .++.++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~--~~~~~G~e-~~~~~~~~g 80 (226)
T PRK10402 8 EEISHYMSESAFKDCFS----FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLY--ATLANGKV-SLIDFFAAP 80 (226)
T ss_pred HHHHHHHHHcChhhcCC----HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEE--EECCCCCE-eeeeecCCC
Confidence 34555666544333344 467788999999999999999999999999999999999 77778877 899999999
Q ss_pred CeeccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 84 DYFGHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 84 ~~fGe~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
++||+. +.+.++.++++|+++|.++.|+++.|..+..
T Consensus 81 ~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~ 119 (226)
T PRK10402 81 CFIGEIELIDKDHETKAVQAIEECWCLALPMKDCRPLLL 119 (226)
T ss_pred CeEEeehhhcCCCCCccEEEeccEEEEEEEHHHHHHHHh
Confidence 999999 7788999999999999999999998876654
No 19
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.34 E-value=4.1e-12 Score=114.20 Aligned_cols=107 Identities=25% Similarity=0.313 Sum_probs=94.6
Q ss_pred cCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC-
Q 040957 11 SCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG- 89 (430)
Q Consensus 11 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~- 89 (430)
...+.|..+..+....+......+.+++|++|+.+|++.+++|+|.+|.++++ ....+|++ .++.++.+|++||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~--~~~~~G~~-~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLY--ANTEDGRE-IILGFLGPGDFFGELA 79 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEE--EECCCCcE-EEEEEecCCchhhhHH
Confidence 45566777788888888888999999999999999999999999999999999 77777777 899999999999999
Q ss_pred -CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 90 -SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 90 -~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
+.+.++.++++|+++|.++.++++.|..+..
T Consensus 80 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 111 (214)
T COG0664 80 LLGGDPRSASAVALTDVEVLEIPRKDFLELLA 111 (214)
T ss_pred HhcCCCccceEEEcceEEEEEecHHHHHHHHh
Confidence 5666899999999999999999998765543
No 20
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.34 E-value=1.5e-12 Score=100.26 Aligned_cols=85 Identities=35% Similarity=0.382 Sum_probs=76.1
Q ss_pred EEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC--CCCCcceeeEEEecceEEEEe
Q 040957 33 VKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG--SPTIFRQGDVIALTELTCLVL 110 (430)
Q Consensus 33 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~--~~~~~~~~~v~A~~~~~~l~i 110 (430)
.++|++|++|+++|+..+++|||++|.++++ ..+.+++. .++..+.+|++||+. +.+.++..+++|.++|.++.|
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~--~~~~~~~~-~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i 77 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVS--SINEDGKE-QIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRI 77 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEE--EETTTSEE-EEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEE
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEE--eceeccee-eeecceeeeccccceeecCCCccEEEEEEccCEEEEEE
Confidence 3789999999999999999999999999999 77666666 788999999999999 677799999999999999999
Q ss_pred cccccccccc
Q 040957 111 PHEHCNWLET 120 (430)
Q Consensus 111 ~~~~f~~l~~ 120 (430)
++++|..+.+
T Consensus 78 ~~~~~~~~~~ 87 (91)
T PF00027_consen 78 PREDFLQLLQ 87 (91)
T ss_dssp EHHHHHHHHH
T ss_pred eHHHHHHHHH
Confidence 9998876644
No 21
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.28 E-value=1.4e-11 Score=132.34 Aligned_cols=110 Identities=19% Similarity=0.112 Sum_probs=99.5
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCee
Q 040957 7 IEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYF 86 (430)
Q Consensus 7 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~f 86 (430)
.+.++++++|++++++.+.+|+..++.+.|.+||.|+.+|+.++.+|||.+|.|+++ .. .++++ .++..+.+|++|
T Consensus 373 ~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~--~~-~~~~e-~~l~~l~~Gd~F 448 (823)
T PLN03192 373 LPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEII--DS-EGEKE-RVVGTLGCGDIF 448 (823)
T ss_pred HHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEE--Ee-cCCcc-eeeEEccCCCEe
Confidence 356889999999999999999999999999999999999999999999999999998 43 23444 889999999999
Q ss_pred ccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 87 GHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 87 Ge~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
||. +.+.++.++++|.++|+++.|+++.|..+.+
T Consensus 449 GE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~ 484 (823)
T PLN03192 449 GEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQ 484 (823)
T ss_pred cchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHH
Confidence 999 7889999999999999999999998876544
No 22
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.24 E-value=4.7e-12 Score=129.24 Aligned_cols=111 Identities=22% Similarity=0.263 Sum_probs=98.1
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCe
Q 040957 6 VIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDY 85 (430)
Q Consensus 6 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~ 85 (430)
+.++++++|+|+++++..+..|+..++...|.+|+.|++|||+.+.+|||.+|.+++. ..+ +| .+.....+++||+
T Consensus 417 ~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~--~~~-~g-~~~~~~~L~~Gd~ 492 (727)
T KOG0498|consen 417 CLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESI--TTD-GG-GFFVVAILGPGDF 492 (727)
T ss_pred hHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEE--Ecc-CC-ceEEEEEecCCCc
Confidence 4678899999999999999999999999999999999999999999999999999999 543 33 3378899999999
Q ss_pred ec-cC--CCC-CcceeeEEEecceEEEEecccccccccc
Q 040957 86 FG-HG--SPT-IFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 86 fG-e~--~~~-~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
|| |+ ... .|.+.+|+|+|.|+++.|.+++|..+.+
T Consensus 493 ~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~ 531 (727)
T KOG0498|consen 493 FGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQ 531 (727)
T ss_pred cchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHH
Confidence 99 66 334 7779999999999999999998776554
No 23
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.23 E-value=2.7e-11 Score=108.21 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=75.7
Q ss_pred hceEEEecCCCEEEeCCC--cCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC-CCCCcceeeEEEecceE
Q 040957 30 IVIVKRYGKGEYVVRDGD--IGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG-SPTIFRQGDVIALTELT 106 (430)
Q Consensus 30 ~~~~~~~~~ge~i~~~g~--~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~-~~~~~~~~~v~A~~~~~ 106 (430)
.++.+.|++|++|+.+|| +++++|+|++|.++++ +.+.+|++ .++.++.+|++||+. +.+.++..+++|+++|.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~--~~~~~G~e-~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~~ 81 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLH--TVDDEGNA-LTLRYVRPGEYFGEEALAGAERAYFAEAVTDSR 81 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEE--EECCCCCE-EEEEEecCCCeechHHhcCCCCCceEEEcCceE
Confidence 467889999999999999 7799999999999999 77778888 999999999999998 66678899999999999
Q ss_pred EEEeccccc
Q 040957 107 CLVLPHEHC 115 (430)
Q Consensus 107 ~l~i~~~~f 115 (430)
++.|+++.|
T Consensus 82 v~~i~~~~~ 90 (202)
T PRK13918 82 IDVLNPALM 90 (202)
T ss_pred EEEEEHHHc
Confidence 999998765
No 24
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.23 E-value=2.3e-11 Score=117.96 Aligned_cols=110 Identities=27% Similarity=0.368 Sum_probs=99.2
Q ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccC
Q 040957 4 DEVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRY 83 (430)
Q Consensus 4 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G 83 (430)
....+|+.++|.|+.|+++++.+|...+.++.|++||+|+..|.+..++|+|.+|.|.++ .. + + .+++.+..|
T Consensus 3 ~~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~--~~--~-g--~v~~~~~~g 75 (610)
T COG2905 3 DEPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVR--SD--G-G--EVLDRLAAG 75 (610)
T ss_pred CCHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEE--cC--C-C--eeeeeeccC
Confidence 457899999999999999999999999999999999999999999999999999999998 22 2 2 378999999
Q ss_pred CeeccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 84 DYFGHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 84 ~~fGe~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
|.||-. +...+......|.+|+.||.|+++.|.+|..
T Consensus 76 dlFg~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~ 114 (610)
T COG2905 76 DLFGFSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLME 114 (610)
T ss_pred ccccchhhcccCCCcceeEeeccceEEecCHHHHHHHHH
Confidence 999999 6666777788889999999999998888766
No 25
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.13 E-value=9.3e-12 Score=119.21 Aligned_cols=109 Identities=22% Similarity=0.306 Sum_probs=100.5
Q ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccC
Q 040957 4 DEVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRY 83 (430)
Q Consensus 4 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G 83 (430)
+.+.+.+....++++|..++++++.++|....|.+|+.|+++||++.++|++.+|.+.+. +. ...+..+++|
T Consensus 150 ~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~--~~------g~ll~~m~~g 221 (732)
T KOG0614|consen 150 QLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVS--RE------GKLLGKMGAG 221 (732)
T ss_pred HHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEe--eC------CeeeeccCCc
Confidence 456778888889999999999999999999999999999999999999999999999999 32 2678999999
Q ss_pred CeeccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 84 DYFGHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 84 ~~fGe~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
.+|||+ +.+..|+++|+|++++.+|.|+++.|+.+..
T Consensus 222 tvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~ 260 (732)
T KOG0614|consen 222 TVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMM 260 (732)
T ss_pred hhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999987754
No 26
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.13 E-value=1.4e-10 Score=105.76 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=79.1
Q ss_pred HHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceE
Q 040957 27 IADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELT 106 (430)
Q Consensus 27 l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~ 106 (430)
+...+..++|++|++|+.+|+.++++|+|++|.|+++ ..+.+|++ .++.++.+|++||+. .+.++..+++|+++|.
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~--~~~~~G~e-~i~~~~~~Gd~fG~~-~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTY--RLLSDGRR-QIGAFHLPGDVFGLE-SGSTHRFTAEAIVDTT 109 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEE--EECCCCcE-EEEEEecCCceeccc-CCCcCCeEEEEcCceE
Confidence 3445778999999999999999999999999999999 77778877 889999999999985 3456789999999999
Q ss_pred EEEecccccccccc
Q 040957 107 CLVLPHEHCNWLET 120 (430)
Q Consensus 107 ~l~i~~~~f~~l~~ 120 (430)
++.|+.+.|+.+..
T Consensus 110 v~~i~~~~f~~l~~ 123 (230)
T PRK09391 110 VRLIKRRSLEQAAA 123 (230)
T ss_pred EEEEEHHHHHHHHh
Confidence 99999999887755
No 27
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.12 E-value=3.9e-10 Score=88.39 Aligned_cols=79 Identities=38% Similarity=0.456 Sum_probs=71.7
Q ss_pred CceeehhHHHHHHHHHHhccCCC-----CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEEC-CeeEEEE
Q 040957 161 FGKVFGGQLVGQALAAASKTVDC-----LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQK-GNIIFTL 234 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~-----~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~-g~~~~~~ 234 (430)
.+.+|||.+++++-.|+..++.. ....++++++|++|+..+.++.++++.+|.||+++.++++++|+ |++++++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~G~lva~~ 93 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQRDGKLVASA 93 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECCCCcEEEEE
Confidence 56899999999999998887754 34678899999999999889999999999999999999999999 9999999
Q ss_pred EEecc
Q 040957 235 LASFQ 239 (430)
Q Consensus 235 ~~sf~ 239 (430)
+.+|.
T Consensus 94 ~~~~~ 98 (99)
T cd00556 94 TQSFL 98 (99)
T ss_pred EEeEc
Confidence 98874
No 28
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.01 E-value=8.2e-10 Score=105.38 Aligned_cols=108 Identities=21% Similarity=0.300 Sum_probs=97.1
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCee
Q 040957 7 IEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYF 86 (430)
Q Consensus 7 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~f 86 (430)
.+.|+++++|+.-....+.+|.-.++...|.+|++|++.||.+..+|||.+|.+.+. +++|. ..+..+.+|++|
T Consensus 306 ~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv----~dDg~--t~~~~L~~G~~F 379 (536)
T KOG0500|consen 306 LDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVV----ADDGV--TVFVTLKAGSVF 379 (536)
T ss_pred HHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEE----ecCCc--EEEEEecCCcee
Confidence 467899999999999999999999999999999999999999999999999999999 33554 467889999999
Q ss_pred ccC--------CCCCcceeeEEEecceEEEEecccc-cccccc
Q 040957 87 GHG--------SPTIFRQGDVIALTELTCLVLPHEH-CNWLET 120 (430)
Q Consensus 87 Ge~--------~~~~~~~~~v~A~~~~~~l~i~~~~-f~~l~~ 120 (430)
||+ ..++.|+++++.+..+.++++++++ ++.|..
T Consensus 380 GEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~e 422 (536)
T KOG0500|consen 380 GEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSE 422 (536)
T ss_pred eeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHh
Confidence 999 2568899999999999999999987 577766
No 29
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.00 E-value=6.5e-10 Score=98.49 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=69.9
Q ss_pred CCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC--CCCCc--ceeeEEEecceEEEEecccc
Q 040957 39 GEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG--SPTIF--RQGDVIALTELTCLVLPHEH 114 (430)
Q Consensus 39 ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~--~~~~~--~~~~v~A~~~~~~l~i~~~~ 114 (430)
|+.|+.+|++.+++|+|++|.|+++ ..+++|++ .++.++.+|++||+. +.+.+ +..+++|.++|.++.|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~--~~~~~G~e-~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~ 77 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLS--RVYESGEE-ITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQ 77 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEE--EeCCCCcE-eeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHH
Confidence 7899999999999999999999999 77778777 899999999999999 55544 45789999999999999999
Q ss_pred cccccc
Q 040957 115 CNWLET 120 (430)
Q Consensus 115 f~~l~~ 120 (430)
|..+..
T Consensus 78 ~~~l~~ 83 (193)
T TIGR03697 78 VEKAIE 83 (193)
T ss_pred HHHHHH
Confidence 877755
No 30
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=3.1e-10 Score=104.22 Aligned_cols=109 Identities=33% Similarity=0.451 Sum_probs=99.9
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCC
Q 040957 5 EVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYD 84 (430)
Q Consensus 5 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~ 84 (430)
-+..+|+..|+++.|...+...+++.+..+.|++|+.|+.+|+.++.+|+|.+|+|.+. ... + . +.+ .+..||
T Consensus 237 My~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~--~~~-~--~-v~v-kl~~~d 309 (368)
T KOG1113|consen 237 MYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVL--KKR-D--G-VEV-KLKKGD 309 (368)
T ss_pred hhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchh--hcc-C--C-eEE-Eechhh
Confidence 36789999999999999999999999999999999999999999999999999999999 443 2 1 445 899999
Q ss_pred eeccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 85 YFGHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 85 ~fGe~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
+|||. +.+.+|.+++.|.++..|..+++..|+.|..
T Consensus 310 yfge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllg 347 (368)
T KOG1113|consen 310 YFGELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLG 347 (368)
T ss_pred hcchHHHHhhchhhceeeccCCceeeeeChHHHHHHhh
Confidence 99999 8899999999999999999999999998876
No 31
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.85 E-value=3.6e-09 Score=102.81 Aligned_cols=109 Identities=23% Similarity=0.275 Sum_probs=96.5
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCee
Q 040957 7 IEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYF 86 (430)
Q Consensus 7 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~f 86 (430)
.+.|+++.+|++-+...+..+.-.+....|-+|+.|++.|+.+..+|||..|.|++. -. ++ ++ .++..+.+|.+|
T Consensus 526 y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVl--GG-p~-~~-~Vl~tL~~GsVF 600 (815)
T KOG0499|consen 526 YSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVL--GG-PD-GT-KVLVTLKAGSVF 600 (815)
T ss_pred hhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEe--cC-CC-CC-EEEEEeccccee
Confidence 456788999999999999999999999999999999999999999999999999999 32 23 33 688999999999
Q ss_pred ccC-----CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 87 GHG-----SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 87 Ge~-----~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
||+ -.++.|+++|+|..-|.++.+++++++.+.-
T Consensus 601 GEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~ 639 (815)
T KOG0499|consen 601 GEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILV 639 (815)
T ss_pred eeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHH
Confidence 999 2467889999999999999999999877644
No 32
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.29 E-value=2.7e-07 Score=89.85 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=89.3
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCee
Q 040957 7 IEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYF 86 (430)
Q Consensus 7 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~f 86 (430)
...+..+|.|.--++.-+..|+-.++..+..+|+.|+..|+..+.++||.+|++++. .- + .++.+++.||+|
T Consensus 547 RKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVI--QD----D--EVVAILGKGDVF 618 (971)
T KOG0501|consen 547 RKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVI--QD----D--EVVAILGKGDVF 618 (971)
T ss_pred hhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEe--ec----C--cEEEEeecCccc
Confidence 356778899999999999999999999999999999999999999999999999999 22 2 478999999999
Q ss_pred ccC----CCCCcceeeEEEecceEEEEeccccccc
Q 040957 87 GHG----SPTIFRQGDVIALTELTCLVLPHEHCNW 117 (430)
Q Consensus 87 Ge~----~~~~~~~~~v~A~~~~~~l~i~~~~f~~ 117 (430)
|+. -.-....++++|+|.|.+..|-++.+..
T Consensus 619 GD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~ 653 (971)
T KOG0501|consen 619 GDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLK 653 (971)
T ss_pred hhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHH
Confidence 999 2234456899999999999999886543
No 33
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.04 E-value=4.1e-05 Score=61.10 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=66.9
Q ss_pred CCceeehhHHHHHHHHHHhccC------CCCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEEC-CeeEE
Q 040957 160 KFGKVFGGQLVGQALAAASKTV------DCLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQK-GNIIF 232 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~------~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~-g~~~~ 232 (430)
..+.+|||.+++++-.|+...+ .....+.+++++|++|+.. ..+.++++.++.||+.....++++++ |++++
T Consensus 27 ~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~g~~~~~~~~~~~~~~~~~~a 105 (113)
T cd03443 27 PGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKLGRRLAVVEVEVTDEDGKLVA 105 (113)
T ss_pred CCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEecCceEEEEEEEEECCCCCEEE
Confidence 3458999999999877776332 2234578899999999998 89999999999999999999999998 99999
Q ss_pred EEEEecc
Q 040957 233 TLLASFQ 239 (430)
Q Consensus 233 ~~~~sf~ 239 (430)
.++++|.
T Consensus 106 ~a~~~~~ 112 (113)
T cd03443 106 TARGTFA 112 (113)
T ss_pred EEEEEEe
Confidence 9998874
No 34
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=98.02 E-value=7.6e-05 Score=59.92 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=63.5
Q ss_pred CceeehhHHHHHHHHHHhccC-CCCC--cceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEE-ECCeeEEEEEE
Q 040957 161 FGKVFGGQLVGQALAAASKTV-DCLK--IVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAI-QKGNIIFTLLA 236 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~-~~~~--~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~-Q~g~~~~~~~~ 236 (430)
.+.+|||.+++++=.++...+ ..+. .-.++++.|++|+.++..+..+.+.++.||+....+++++ |+|+++.++++
T Consensus 30 ~g~~HGG~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~g~~~~~~~~~i~~~~~~~va~~~~ 109 (114)
T TIGR02286 30 HGTAHGGFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSRGGRTGTYDVEVVNQEGELVALFRG 109 (114)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCEEEEEEE
Confidence 468999999999854443222 1222 2346799999999987789999999999999999999998 89999999998
Q ss_pred ecc
Q 040957 237 SFQ 239 (430)
Q Consensus 237 sf~ 239 (430)
+|.
T Consensus 110 t~~ 112 (114)
T TIGR02286 110 TSR 112 (114)
T ss_pred EEE
Confidence 875
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.98 E-value=2.4e-06 Score=87.32 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=88.9
Q ss_pred hHHHHHhcCCCCCC-CCCHH-------HHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCc
Q 040957 4 DEVIEFLSCVPLLQ-RLPGS-------SLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDR 75 (430)
Q Consensus 4 ~~~~~~l~~~~~f~-~l~~~-------~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~ 75 (430)
..+.+++.+.|... .+... .+..+--.....++++|+.++++||.++.+|+|++|.++.. .....|++ .
T Consensus 473 s~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv--~~~~~~k~-~ 549 (1158)
T KOG2968|consen 473 SDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSV--IRQSGGKK-E 549 (1158)
T ss_pred HHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhh--hhccCccc-h
Confidence 45666666666321 23222 23344445678899999999999999999999999999987 44334444 6
Q ss_pred ceEEeccCCeeccC--CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 76 PEFQLKRYDYFGHG--SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 76 ~~~~~~~G~~fGe~--~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
++..++.||.+|+. +.+.+|..++.|+.++++.+||..-|+.+..
T Consensus 550 i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ik~ 596 (1158)
T KOG2968|consen 550 IVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNFIKL 596 (1158)
T ss_pred hhhhccCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHHHHH
Confidence 88999999999999 9999999999999999999999987665543
No 36
>PRK10254 thioesterase; Provisional
Probab=97.87 E-value=0.00018 Score=59.42 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=62.1
Q ss_pred CCceeehhHHHHHHHHH----HhccCCCCCcce--eeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE-CCeeEE
Q 040957 160 KFGKVFGGQLVGQALAA----ASKTVDCLKIVH--SLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ-KGNIIF 232 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~A----a~~~~~~~~~~~--s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q-~g~~~~ 232 (430)
..+.+|||.+++++=.| +....+++.... +++++||+|+.. +.+..+-+.++.||+....+++++. +|+++.
T Consensus 49 ~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~-g~l~a~a~vi~~Gr~~~v~~~~v~d~~g~l~a 127 (137)
T PRK10254 49 PFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSE-GKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCC 127 (137)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcC-CeEEEEEEEEecCcCEEEEEEEEEcCCCCEEE
Confidence 35689999999988222 323445555544 468889999986 5899999999999999999999986 489999
Q ss_pred EEEEecc
Q 040957 233 TLLASFQ 239 (430)
Q Consensus 233 ~~~~sf~ 239 (430)
.+++++.
T Consensus 128 ~~~~t~~ 134 (137)
T PRK10254 128 TCRLGTA 134 (137)
T ss_pred EEEEEEE
Confidence 8888764
No 37
>PLN02322 acyl-CoA thioesterase
Probab=97.82 E-value=0.00029 Score=59.21 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCceeehhHHHHHHHHH---HhccCCCCCcc--eeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE-------C
Q 040957 160 KFGKVFGGQLVGQALAA---ASKTVDCLKIV--HSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ-------K 227 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~A---a~~~~~~~~~~--~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q-------~ 227 (430)
..+.+|||.+++++=.| |.....+...+ ..++++|++|+..+..+..+-+.++.||++...+++++. +
T Consensus 41 ~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~ 120 (154)
T PLN02322 41 PFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKAN 120 (154)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEEEEecCCCEEEEEEEEEECCCCcccC
Confidence 35689999999998322 22122222223 457889999998755899999999999999999999998 2
Q ss_pred CeeEEEEEEecccc
Q 040957 228 GNIIFTLLASFQKE 241 (430)
Q Consensus 228 g~~~~~~~~sf~~~ 241 (430)
|+++.++++++...
T Consensus 121 ~~lva~a~~T~~~~ 134 (154)
T PLN02322 121 KILISSSRVTLICN 134 (154)
T ss_pred CeEEEEEEEEEEEc
Confidence 78999999988543
No 38
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.79 E-value=0.00017 Score=58.16 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=61.8
Q ss_pred CceeehhHHHHHHHHHH----hccCCCCCc--ceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE-CCeeEEE
Q 040957 161 FGKVFGGQLVGQALAAA----SKTVDCLKI--VHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ-KGNIIFT 233 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa----~~~~~~~~~--~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q-~g~~~~~ 233 (430)
.+.+|||.+++++=.|+ ....+++.. -.++++.|++|+..+ .+..+.+.++.||+....+++++. +|+++++
T Consensus 32 ~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~gr~~~~~~~~i~~~~g~~va~ 110 (117)
T TIGR00369 32 FGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVHLGRQTGVAEIEIVDEQGRLCAL 110 (117)
T ss_pred cccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEecCceEEEEEEEEECCCCCEEEE
Confidence 45899999999873333 222333333 357899999999886 899999999999999999999964 5889999
Q ss_pred EEEecc
Q 040957 234 LLASFQ 239 (430)
Q Consensus 234 ~~~sf~ 239 (430)
++++|.
T Consensus 111 ~~~t~~ 116 (117)
T TIGR00369 111 SRGTTA 116 (117)
T ss_pred EEEEEc
Confidence 999874
No 39
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.77 E-value=0.00024 Score=59.31 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=61.2
Q ss_pred CceeehhHHHHHHHHHHhccCC---CCCcc---eeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEEC-C-eeEE
Q 040957 161 FGKVFGGQLVGQALAAASKTVD---CLKIV---HSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQK-G-NIIF 232 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~---~~~~~---~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~-g-~~~~ 232 (430)
++.+|||+++|+|=.|+...+. +.... ..++++|++|+.. +++..+-+.++.||+.+..+++++++ + ++++
T Consensus 50 ~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~-g~v~a~a~v~~~G~~~~v~~i~v~~~~~~~lva 128 (141)
T COG2050 50 GGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKE-GDVTAEARVLHLGRRVAVVEIEVKNDEGGRLVA 128 (141)
T ss_pred CceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCC-CeEEEEEEEEeeCCEEEEEEEEEEECCCCeEEE
Confidence 4689999999998444433321 11122 3688999999998 55999999999999999999999963 3 7999
Q ss_pred EEEEecccc
Q 040957 233 TLLASFQKE 241 (430)
Q Consensus 233 ~~~~sf~~~ 241 (430)
.++.++...
T Consensus 129 ~~~~t~~v~ 137 (141)
T COG2050 129 KGTGTYAVL 137 (141)
T ss_pred EEEEEEEEe
Confidence 998887543
No 40
>PRK10293 acyl-CoA esterase; Provisional
Probab=97.74 E-value=0.00046 Score=57.10 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=61.9
Q ss_pred CCceeehhHHHHHHHH----HHhccCCCCCc--ceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE-CCeeEE
Q 040957 160 KFGKVFGGQLVGQALA----AASKTVDCLKI--VHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ-KGNIIF 232 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~----Aa~~~~~~~~~--~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q-~g~~~~ 232 (430)
..+.+|||.+++++=. |+....+++.. =.+++++|++|+.. +.+..+-+.++.||++...+++++. +|+++.
T Consensus 49 ~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~-g~l~a~a~vv~~Gr~~~~~~~~v~d~~g~l~A 127 (136)
T PRK10293 49 PFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSARE-GRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCC 127 (136)
T ss_pred CcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCC-ceEEEEEEEEecCCCEEEEEEEEEeCCCCEEE
Confidence 4568999999988732 22333443433 33678999999986 5899999999999999999999986 588999
Q ss_pred EEEEecc
Q 040957 233 TLLASFQ 239 (430)
Q Consensus 233 ~~~~sf~ 239 (430)
.++++|.
T Consensus 128 ~~~~t~~ 134 (136)
T PRK10293 128 SSRLTTA 134 (136)
T ss_pred EEEEEEE
Confidence 9998874
No 41
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=97.62 E-value=0.00036 Score=57.98 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=58.5
Q ss_pred CCceeehhHHHHHHHHHHh-------ccCCC--CCcceeeeeeeccCcCCCCCeEEEEEE-----------eeeCCCeeE
Q 040957 160 KFGKVFGGQLVGQALAAAS-------KTVDC--LKIVHSLHCYFLLVGDLNIPIIYQVHR-----------VRDGNSFAT 219 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~-------~~~~~--~~~~~s~~~~Fl~~~~~~~pi~~~V~~-----------lr~Gr~~s~ 219 (430)
..+.+|||.+.+++-.|+. ..... .....++++.|++|+..+..++.++.. .|.||+..+
T Consensus 36 ~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~ 115 (138)
T TIGR02447 36 HHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGDPVANCEAPDLESWEAFLATLQRGGKARVK 115 (138)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCCeEEEEEcCCHHHHHHHHHHHHhCCceEEE
Confidence 3468999999999844431 11222 234567999999999864333444432 789999999
Q ss_pred EEEEEEECCeeEEEEEEecc
Q 040957 220 RRVDAIQKGNIIFTLLASFQ 239 (430)
Q Consensus 220 ~~V~~~Q~g~~~~~~~~sf~ 239 (430)
..++++++|+++.+++.+|.
T Consensus 116 ~~~~v~~~~~lvA~~~g~~~ 135 (138)
T TIGR02447 116 LEAQISSDGKLAATFSGEYV 135 (138)
T ss_pred EEEEEEECCEEEEEEEEEEE
Confidence 99999999999999998874
No 42
>PRK11688 hypothetical protein; Provisional
Probab=97.54 E-value=0.00051 Score=58.28 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=59.9
Q ss_pred CceeehhHHHHHHHHHH---hcc-CCC---C------------CcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEE
Q 040957 161 FGKVFGGQLVGQALAAA---SKT-VDC---L------------KIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRR 221 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa---~~~-~~~---~------------~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~ 221 (430)
.+.+|||.+++++=.|+ ..+ ..+ . ..-.+++++|++|+. +..+..+.+.+|.||++...+
T Consensus 55 ~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~ 133 (154)
T PRK11688 55 QSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVAR 133 (154)
T ss_pred cCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEE
Confidence 45799999998872222 111 110 0 123578999999996 678999999999999999999
Q ss_pred EEEEE-CCeeEEEEEEecc
Q 040957 222 VDAIQ-KGNIIFTLLASFQ 239 (430)
Q Consensus 222 V~~~Q-~g~~~~~~~~sf~ 239 (430)
++++. +|+++.+++++|.
T Consensus 134 ~~i~~~~g~lvA~a~~t~~ 152 (154)
T PRK11688 134 MELHNEQGVHIASGTATYL 152 (154)
T ss_pred EEEECCCCCEEEEEEEEEE
Confidence 99975 4899999999885
No 43
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=97.44 E-value=0.0015 Score=57.17 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=64.8
Q ss_pred CCceeehhHHHHHHHHHHhccCCCCCcce-eeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEEEec
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDCLKIVH-SLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASF 238 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~~~~~~-s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~~sf 238 (430)
+.+.++||.++|||-.++....+....+. ..++.|++|+.++..+.++++.++.+++.....+.+.++|++++.+.+.+
T Consensus 100 ~~~i~hG~f~~aqa~~la~~~~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~v~g~~V~ege~~~ 179 (185)
T PRK04424 100 KTGIARGHHLFAQANSLAVAVIDAELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSYVGDELVFRGKFIM 179 (185)
T ss_pred CCCeecHHHHHHHHHHHHHHhcCCcEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEEECCEEEEEEEEEE
Confidence 44579999999998766544333222222 24889999999988999999999999999999999999999999999877
Q ss_pred cc
Q 040957 239 QK 240 (430)
Q Consensus 239 ~~ 240 (430)
-.
T Consensus 180 ~~ 181 (185)
T PRK04424 180 YR 181 (185)
T ss_pred EE
Confidence 43
No 44
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.39 E-value=0.0013 Score=53.02 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEE
Q 040957 330 ALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLV 409 (430)
Q Consensus 330 ~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA 409 (430)
.+|-.+++-++|..+...+.... .......|+|.+|.|.+|.+.+ ++..+.+....+.-....++++||+||+++|
T Consensus 34 ~vhGG~l~~l~D~a~~~a~~~~~---~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~gr~~~~~~~~i~~~~g~~va 109 (117)
T TIGR00369 34 SLHGGVSAALADTAGSAAGYLCN---SGGQAVVGLELNANHLRPAREG-KVRAIAQVVHLGRQTGVAEIEIVDEQGRLCA 109 (117)
T ss_pred cChHHHHHHHHHHHHHHHHHhhc---CCCceEEEEEEEeeeccccCCC-EEEEEEEEEecCceEEEEEEEEECCCCCEEE
Confidence 45777788889965411111111 0112467999999999988777 9999998888888889999999999999999
Q ss_pred EEec
Q 040957 410 SLTQ 413 (430)
Q Consensus 410 ~~~Q 413 (430)
+++=
T Consensus 110 ~~~~ 113 (117)
T TIGR00369 110 LSRG 113 (117)
T ss_pred EEEE
Confidence 9863
No 45
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.36 E-value=0.0013 Score=53.99 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHhh-ceEEEecCCCEEEeCC-CcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC------
Q 040957 18 RLPGSSLKRIADI-VIVKRYGKGEYVVRDG-DIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG------ 89 (430)
Q Consensus 18 ~l~~~~~~~l~~~-~~~~~~~~ge~i~~~g-~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~------ 89 (430)
+++..+.+.|+.+ +++..+++|+..--|| .+.+.+-++++|.++++ .. + ..+..+.+.+|+...
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs--~~----g--~fLH~I~p~qFlDSPEW~s~~ 85 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVS--CD----G--RFLHYIYPYQFLDSPEWESLR 85 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEE--EC----C--EeeEeecccccccChhhhccc
Confidence 5799999999988 7789999999998887 45599999999999999 22 2 457777777776655
Q ss_pred -CCCCcceeeEEEecceEEEEecccccccccc
Q 040957 90 -SPTIFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 90 -~~~~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
-.+.....|++|.++|.+++.+++.+..+-.
T Consensus 86 ~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~ 117 (153)
T PF04831_consen 86 PSEDDKFQVTITAEEDCRYLCWPREKLYLLLA 117 (153)
T ss_pred cCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHh
Confidence 3456678999999999999999998765544
No 46
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=97.30 E-value=0.00085 Score=49.49 Aligned_cols=70 Identities=21% Similarity=0.141 Sum_probs=56.9
Q ss_pred ceeehhHHHHHHHHHHhccC----C--CCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeE
Q 040957 162 GKVFGGQLVGQALAAASKTV----D--CLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNII 231 (430)
Q Consensus 162 ~~~~GG~~~a~al~Aa~~~~----~--~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~ 231 (430)
+.+|||.+++.+=.|+.... . ......++++.|++|+..+.+++++++.++-|++..+.++++++++..+
T Consensus 2 G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~~~~~ 77 (79)
T PF03061_consen 2 GIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSEDGRL 77 (79)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEETTSCE
T ss_pred CEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEECCCcE
Confidence 46899999888766654433 2 1345778999999999998899999999999999999999999987653
No 47
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=97.24 E-value=0.00021 Score=57.46 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=53.4
Q ss_pred ceeehhHHHH--HHHHHHhccCCCCCcceee------------------------------ee-eeccCcCCCCCeEEEE
Q 040957 162 GKVFGGQLVG--QALAAASKTVDCLKIVHSL------------------------------HC-YFLLVGDLNIPIIYQV 208 (430)
Q Consensus 162 ~~~~GG~~~a--~al~Aa~~~~~~~~~~~s~------------------------------~~-~Fl~~~~~~~pi~~~V 208 (430)
..+|||.+++ +...+|..++|.+..+|++ |+ +|.+|.+.+..+.|.+
T Consensus 19 ~~~~~g~~~~~~~vW~ra~~~~p~d~~~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~ 98 (131)
T PF02551_consen 19 MNPFGGQVLEHQQVWVRANGILPDDPRIHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAI 98 (131)
T ss_dssp SBCCCHHHHHEECCCCCCCSTS-TTHCCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEE
T ss_pred cCCCCCeEehhhhhhHHhCCCCCCchhHhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEE
Confidence 4788999999 7777888888888888988 77 9999999999999999
Q ss_pred EE--------eeeCCCeeEEEEEEEECCeeEEEEE
Q 040957 209 HR--------VRDGNSFATRRVDAIQKGNIIFTLL 235 (430)
Q Consensus 209 ~~--------lr~Gr~~s~~~V~~~Q~g~~~~~~~ 235 (430)
+. +.+|+.|+ .|+|+++++++
T Consensus 99 ~sp~A~~~Rgl~~G~~f~------~q~G~Lvas~~ 127 (131)
T PF02551_consen 99 ESPSASGGRGLVRGRFFD------TQDGELVASVV 127 (131)
T ss_dssp EEEEEETTEEEEEECCEE------ECTTEEEEEEE
T ss_pred EcCccccCcccccCceEe------cCCCCEEEEEe
Confidence 99 77777774 59999988754
No 48
>PRK11688 hypothetical protein; Provisional
Probab=97.18 E-value=0.0029 Score=53.64 Aligned_cols=86 Identities=20% Similarity=0.106 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhhhhhhhhccc--CccC--------CCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEE
Q 040957 330 ALHRCVVAFASDLIFSSVSLNP--HRRK--------GFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGE 399 (430)
Q Consensus 330 ~~~~~~la~~sD~~~~~~~~~~--~~~~--------~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~ 399 (430)
.+|=.+++-++|..+-..++.- .... ......+|+|.++.|.+|.. ++++..+.+..+.+.-....+++
T Consensus 57 ~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~ 135 (154)
T PRK11688 57 ILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARME 135 (154)
T ss_pred eeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEE
Confidence 4677788889997653333221 0000 01124679999999999875 88999999999988889999999
Q ss_pred EEccCCCEEEEEeccce
Q 040957 400 MFNTKGELLVSLTQEAL 416 (430)
Q Consensus 400 i~~~~G~lvA~~~Q~~l 416 (430)
+||++|++||+++..-+
T Consensus 136 i~~~~g~lvA~a~~t~~ 152 (154)
T PRK11688 136 LHNEQGVHIASGTATYL 152 (154)
T ss_pred EECCCCCEEEEEEEEEE
Confidence 99999999999987544
No 49
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.12 E-value=0.00053 Score=70.82 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=86.4
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCC
Q 040957 5 EVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYD 84 (430)
Q Consensus 5 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~ 84 (430)
++..+|+.+.+| .....-+++.+++...+..|++|++.|++.+.+|++.+|.+.++ ..+.+|++ ..+....+|+
T Consensus 92 eil~~L~~i~~~---EkP~fl~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~--~~~~~g~~-~llk~V~~G~ 165 (1158)
T KOG2968|consen 92 EILYMLSAIRIL---EKPVFLELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVH--IRNGDGKE-YLLKTVPPGG 165 (1158)
T ss_pred HHHHHHHHhHhh---ccceeeeechhhhhhcccCCceeccCCCCCceEEEEeccceEEE--ecCCCCce-eeEeeccCCC
Confidence 455566666555 22223345577888899999999999999999999999999999 77778877 8999999997
Q ss_pred eeccC------CCC---CcceeeEEEecceEEEEecccccccccc
Q 040957 85 YFGHG------SPT---IFRQGDVIALTELTCLVLPHEHCNWLET 120 (430)
Q Consensus 85 ~fGe~------~~~---~~~~~~v~A~~~~~~l~i~~~~f~~l~~ 120 (430)
-|..+ +.+ ..+...++|.++|++..++...|+.+-.
T Consensus 166 ~~tSllSiLd~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~ 210 (1158)
T KOG2968|consen 166 SFTSLLSILDSLPGFPSLSRTIAAKAATDCTVARIPYTSFRESFH 210 (1158)
T ss_pred chHhHHHHHHhccCCCcccceeeeeeecCceEEEeccchhhhhhc
Confidence 66655 333 3456789999999999999999887755
No 50
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.11 E-value=0.0052 Score=49.18 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEE
Q 040957 329 QALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELL 408 (430)
Q Consensus 329 ~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lv 408 (430)
..+|-..++.++|..+...+... . ....|++.++.|.+|...++++..+.+....+......++++||++|+++
T Consensus 31 g~~HGG~i~al~D~~~~~~~~~~----~--~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~g~~~~~~~~~i~~~~~~~v 104 (114)
T TIGR02286 31 GTAHGGFLFSLADSAFAYACNSY----G--DAAVAAQCTIDFLRPGRAGERLEAEAVEVSRGGRTGTYDVEVVNQEGELV 104 (114)
T ss_pred CCchHHHHHHHHHHHHHHHhcCC----C--CceEEEEEEEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCEE
Confidence 34577778889997643222111 1 12468899999999999999999999999888888999999999999999
Q ss_pred EEEecc
Q 040957 409 VSLTQE 414 (430)
Q Consensus 409 A~~~Q~ 414 (430)
|+++-.
T Consensus 105 a~~~~t 110 (114)
T TIGR02286 105 ALFRGT 110 (114)
T ss_pred EEEEEE
Confidence 998754
No 51
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.11 E-value=0.0021 Score=56.38 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=71.7
Q ss_pred HHHHhhceEEEecCCCEE-EeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC--CCCCcceeeEEE
Q 040957 25 KRIADIVIVKRYGKGEYV-VRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG--SPTIFRQGDVIA 101 (430)
Q Consensus 25 ~~l~~~~~~~~~~~ge~i-~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~--~~~~~~~~~v~A 101 (430)
+.|......+.+++|..+ .........+|+|++|.+.+. .. +. ..+.....-.+||-. +.+......++|
T Consensus 16 ~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir--r~----d~-ll~~t~~aP~IlGl~~~~~~~~~~~~l~a 88 (207)
T PRK11832 16 KCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR--RE----EN-VLIGITQAPYIMGLADGLMKNDIPYKLIS 88 (207)
T ss_pred HHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE--ec----CC-eEEEeccCCeEeecccccCCCCceEEEEE
Confidence 445555678899999997 544444578999999999997 32 23 667777888999997 555555688999
Q ss_pred ecceEEEEecccccccc-ccccccc
Q 040957 102 LTELTCLVLPHEHCNWL-ETKSIWS 125 (430)
Q Consensus 102 ~~~~~~l~i~~~~f~~l-~~~~~~~ 125 (430)
.++|+++.|+.+.|..+ .+...|.
T Consensus 89 e~~c~~~~i~~~~~~~iie~~~LW~ 113 (207)
T PRK11832 89 EGNCTGYHLPAKQTITLIEQNQLWR 113 (207)
T ss_pred cCccEEEEeeHHHHHHHHHHhchHH
Confidence 99999999999976555 4477885
No 52
>PRK10254 thioesterase; Provisional
Probab=96.94 E-value=0.014 Score=48.23 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEE
Q 040957 329 QALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELL 408 (430)
Q Consensus 329 ~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lv 408 (430)
..+|=.+++.++|...-..+..... .....+|+|.++.|.+|...+ -+..+.+..+.+.-....++++||++|+|+
T Consensus 51 G~vHGGv~~tLaD~a~g~A~~~~~~---~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~~g~l~ 126 (137)
T PRK10254 51 GLLHGGASAALAETLGSMAGFLMTR---DGQCVVGTELNATHHRPVSEG-KVRGVCQPLHLGRQNQSWEIVVFDEQGRRC 126 (137)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEEEeEEeccCcCC-eEEEEEEEEecCcCEEEEEEEEEcCCCCEE
Confidence 4567788889999743222211111 112478999999999987654 455555555555555678999999999999
Q ss_pred EEEeccce
Q 040957 409 VSLTQEAL 416 (430)
Q Consensus 409 A~~~Q~~l 416 (430)
|+++=.-.
T Consensus 127 a~~~~t~~ 134 (137)
T PRK10254 127 CTCRLGTA 134 (137)
T ss_pred EEEEEEEE
Confidence 99875443
No 53
>PRK10694 acyl-CoA esterase; Provisional
Probab=96.88 E-value=0.01 Score=48.82 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCceeehhHHHHHHHHHHhc----cCCCCCcceee-eeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE----C---
Q 040957 160 KFGKVFGGQLVGQALAAASK----TVDCLKIVHSL-HCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ----K--- 227 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~----~~~~~~~~~s~-~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q----~--- 227 (430)
..+.+|||++++++-.+|.- .........++ .+.|++|...+.-+.+..+.++.||+.-..+++++. .
T Consensus 25 ~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS~~v~v~v~~~~~~~~~~ 104 (133)
T PRK10694 25 ANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTSISINIEVWVKKVASEPI 104 (133)
T ss_pred CCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccCceEEEEEEEEEeecccCCC
Confidence 45689999999986544433 33333345666 559999999987888999999999999999999985 1
Q ss_pred C--eeEEEEEEeccc
Q 040957 228 G--NIIFTLLASFQK 240 (430)
Q Consensus 228 g--~~~~~~~~sf~~ 240 (430)
| +.+.++.++|-.
T Consensus 105 g~~~~~~~~~~tfVa 119 (133)
T PRK10694 105 GQRYKATEALFTYVA 119 (133)
T ss_pred CcEEEEEEEEEEEEE
Confidence 1 235666667744
No 54
>PRK10293 acyl-CoA esterase; Provisional
Probab=96.80 E-value=0.016 Score=47.91 Aligned_cols=85 Identities=18% Similarity=0.058 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEE
Q 040957 329 QALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELL 408 (430)
Q Consensus 329 ~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lv 408 (430)
..+|=.+++.++|......+. ... ......+|++.++.|.+|...+ -+..+.+..+.+.-....++++||++|+|+
T Consensus 51 G~lHGGv~~tLaD~a~~~a~~-~~~--~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~~Gr~~~~~~~~v~d~~g~l~ 126 (136)
T PRK10293 51 GLLHGGASVVLAESIGSVAGY-LCT--EGEQKVVGLEINANHVRSAREG-RVRGVCKPLHLGSRHQVWQIEIFDEKGRLC 126 (136)
T ss_pred CcccHHHHHHHHHHHHHHHHH-hcc--cCCceEEEEEEEeEEecccCCc-eEEEEEEEEecCCCEEEEEEEEEeCCCCEE
Confidence 446777888899974321111 111 1112478999999999987765 366666666666666789999999999999
Q ss_pred EEEecccee
Q 040957 409 VSLTQEALL 417 (430)
Q Consensus 409 A~~~Q~~l~ 417 (430)
|.++-.-++
T Consensus 127 A~~~~t~~i 135 (136)
T PRK10293 127 CSSRLTTAI 135 (136)
T ss_pred EEEEEEEEE
Confidence 999865443
No 55
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=96.79 E-value=0.015 Score=46.83 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=62.0
Q ss_pred CceeehhHHHHHHHHHHhccC----CCCCcceee-eeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECC------e
Q 040957 161 FGKVFGGQLVGQALAAASKTV----DCLKIVHSL-HCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKG------N 229 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~----~~~~~~~s~-~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g------~ 229 (430)
.+.+|||.+++.+-.|+...+ .......++ ++.|++|...+..+.++++.++-||+....++++++++ +
T Consensus 22 ~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~ 101 (123)
T cd03442 22 HGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRTSMEVGVEVEAEDPLTGERR 101 (123)
T ss_pred CCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecCCeEEEEEEEEEecCCCCcEE
Confidence 458999999888755543322 222334566 69999999998899999999999999999999999864 5
Q ss_pred eEEEEEEecccc
Q 040957 230 IIFTLLASFQKE 241 (430)
Q Consensus 230 ~~~~~~~sf~~~ 241 (430)
+++++..++-..
T Consensus 102 ~~a~~~~~~v~~ 113 (123)
T cd03442 102 LVTSAYFTFVAL 113 (123)
T ss_pred EEEEEEEEEEEE
Confidence 777777766443
No 56
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=96.69 E-value=0.012 Score=43.61 Aligned_cols=79 Identities=28% Similarity=0.253 Sum_probs=66.8
Q ss_pred CCceeehhHHHHHHHHHHhccCCC------CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEEC-CeeEE
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDC------LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQK-GNIIF 232 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~------~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~-g~~~~ 232 (430)
..+.++||..+.++..++...... ...+.+++++|.+|...+..+.++.+....+++.....+.+.++ |++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (100)
T cd03440 14 GGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNEDGKLVA 93 (100)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEEEEECCCCCEEE
Confidence 345799999999998888766632 34577889999999999999999999999999999999999987 88888
Q ss_pred EEEEec
Q 040957 233 TLLASF 238 (430)
Q Consensus 233 ~~~~sf 238 (430)
.+...+
T Consensus 94 ~~~~~~ 99 (100)
T cd03440 94 TATATF 99 (100)
T ss_pred EEEEEe
Confidence 876654
No 57
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.66 E-value=0.0019 Score=64.68 Aligned_cols=105 Identities=16% Similarity=0.288 Sum_probs=81.7
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHhhceEE-EecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccC
Q 040957 5 EVIEFLSCVPLLQRLPGSSLKRIADIVIVK-RYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRY 83 (430)
Q Consensus 5 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~-~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G 83 (430)
.+.+|..++|.|.+++-....+|+..+... .-.+|.+|+..|+..+.+++|+.|.|++. +. +|+. ..+.-|
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~--~P--dGk~----e~l~mG 349 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVV--KP--DGKR----EELKMG 349 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEe--cC--CCce----EEeecc
Confidence 466788899999999999999999887653 34789999999999999999999999999 65 5555 356778
Q ss_pred CeeccC--CCCCcceeeE-EEecceEEEEeccccccc
Q 040957 84 DYFGHG--SPTIFRQGDV-IALTELTCLVLPHEHCNW 117 (430)
Q Consensus 84 ~~fGe~--~~~~~~~~~v-~A~~~~~~l~i~~~~f~~ 117 (430)
+-||-. ...+...-.. +-+.||++.+|...+|-.
T Consensus 350 nSFG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycr 386 (1283)
T KOG3542|consen 350 NSFGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCR 386 (1283)
T ss_pred cccCCCCCcchhhhhhhhheecccceEEEeehhhHHH
Confidence 999987 4333332222 346689999999877543
No 58
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=96.61 E-value=0.028 Score=44.45 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEE
Q 040957 330 ALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLV 409 (430)
Q Consensus 330 ~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA 409 (430)
..|-..++-+.|......+..-. .......+.+.++.|++|.+. +++..+.+....++.....++++|+++|+++|
T Consensus 30 ~vhgg~l~~l~d~a~~~~~~~~~---~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~g~~~~~~~~~~~~~~~~~~a 105 (113)
T cd03443 30 IVHGGAIATLADTAGGLAALSAL---PPGALAVTVDLNVNYLRPARG-GDLTARARVVKLGRRLAVVEVEVTDEDGKLVA 105 (113)
T ss_pred eEeHHHHHHHHHHHHHHHHhhcc---CCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEecCceEEEEEEEEECCCCCEEE
Confidence 45666777777864332222111 112346788889999999888 99999999999999999999999999999999
Q ss_pred EEeccc
Q 040957 410 SLTQEA 415 (430)
Q Consensus 410 ~~~Q~~ 415 (430)
++...-
T Consensus 106 ~a~~~~ 111 (113)
T cd03443 106 TARGTF 111 (113)
T ss_pred EEEEEE
Confidence 988643
No 59
>PLN02322 acyl-CoA thioesterase
Probab=96.49 E-value=0.024 Score=47.68 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEcc-----
Q 040957 329 QALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNT----- 403 (430)
Q Consensus 329 ~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~----- 403 (430)
..+|=.+++.++|..+- .+.... .. ....+|+|.++.|.+|...++.+..+.+....+.-....+++|||.
T Consensus 43 G~vHGGv~atLaDta~g-~A~~~~--~~-~~~~vTiel~infLrpa~~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~ 118 (154)
T PLN02322 43 KVLHGGVSALIAESLAS-LGAHMA--SG-FKRVAGIQLSINHLKSADLGDLVFAEATPVSTGKTIQVWEVKLWKTTDKDK 118 (154)
T ss_pred CCccHHHHHHHHHHHHH-HHHhhc--cC-CCceEEEEEEEEEeccCCCCCEEEEEEEEEecCCCEEEEEEEEEECCCCcc
Confidence 34577788889996421 111111 11 1236899999999998887789999999988888889999999994
Q ss_pred -CCCEEEEEeccceeccCCCC
Q 040957 404 -KGELLVSLTQEALLRSPKPK 423 (430)
Q Consensus 404 -~G~lvA~~~Q~~l~r~~~~~ 423 (430)
+|+|+|+++...++...+++
T Consensus 119 ~~~~lva~a~~T~~~~~~~~~ 139 (154)
T PLN02322 119 ANKILISSSRVTLICNLPIPD 139 (154)
T ss_pred cCCeEEEEEEEEEEEccCChh
Confidence 38999999988765544333
No 60
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=96.48 E-value=0.033 Score=41.19 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=50.1
Q ss_pred eeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecc
Q 040957 360 ASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQE 414 (430)
Q Consensus 360 ~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~ 414 (430)
.....+.+++|++++..++++.++.+....+.........+++++|++++++.+.
T Consensus 44 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (100)
T cd03440 44 GAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNEDGKLVATATAT 98 (100)
T ss_pred eEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEEEEECCCCCEEEEEEEE
Confidence 4567888899999999999999999999999999999999999999999998764
No 61
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=96.43 E-value=0.02 Score=46.93 Aligned_cols=77 Identities=23% Similarity=0.263 Sum_probs=58.1
Q ss_pred CceeehhHHHHHH--HHHHhccC-CCCCccee--eeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEEC--CeeEEE
Q 040957 161 FGKVFGGQLVGQA--LAAASKTV-DCLKIVHS--LHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQK--GNIIFT 233 (430)
Q Consensus 161 ~~~~~GG~~~a~a--l~Aa~~~~-~~~~~~~s--~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~--g~~~~~ 233 (430)
....|||+++.++ +..+...+ .+..+..| +++.||.++..+..++++-..+|.||+++...|+++-. |+++..
T Consensus 53 ~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~ 132 (148)
T KOG3328|consen 53 FKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRVGKTLAFTDVELRRKSTGKIIAK 132 (148)
T ss_pred cccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEEEeecCceEEEEEEEEEEcCCCeEEEe
Confidence 4589999988876 22221222 33444555 68889999999999999999999999999999999774 677665
Q ss_pred EEEe
Q 040957 234 LLAS 237 (430)
Q Consensus 234 ~~~s 237 (430)
...+
T Consensus 133 grht 136 (148)
T KOG3328|consen 133 GRHT 136 (148)
T ss_pred cceE
Confidence 5433
No 62
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=96.21 E-value=0.028 Score=41.19 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=47.4
Q ss_pred ceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEE
Q 040957 359 TASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLV 409 (430)
Q Consensus 359 ~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA 409 (430)
...++.+.++.|++|+..++.+..+.+....++-....+.++|+++++++|
T Consensus 29 ~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~~~~~~~ 79 (79)
T PF03061_consen 29 RGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSEDGRLCA 79 (79)
T ss_dssp EEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEETTSCEEE
T ss_pred cceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEECCCcEEC
Confidence 457899999999999999999999999999999999999999999999987
No 63
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=96.07 E-value=0.11 Score=43.75 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=57.9
Q ss_pred CCceeehhHHHHHHHHHHh----ccCCCCCc-ceee-eeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECC-----
Q 040957 160 KFGKVFGGQLVGQALAAAS----KTVDCLKI-VHSL-HCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKG----- 228 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~----~~~~~~~~-~~s~-~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g----- 228 (430)
..+.+|||.+++|.=.+|. +.+. +.. -.|+ +.+|..|...+.-+.+....++.|||--++.|+++-.+
T Consensus 27 ~~g~ifGG~lm~~mD~~a~i~A~~~a~-~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~~~~~~~ 105 (157)
T COG1607 27 PNGTIFGGWLLSWMDLAAAIAASRHAG-GRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAEDIRSGE 105 (157)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhC-CeEEEEEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEecccCCc
Confidence 3568999999999744443 2332 222 2222 67899999998899999999999999999999997752
Q ss_pred -eeEEEEEEecccc
Q 040957 229 -NIIFTLLASFQKE 241 (430)
Q Consensus 229 -~~~~~~~~sf~~~ 241 (430)
..+..+.+.|=..
T Consensus 106 ~~~~t~~~ft~VAv 119 (157)
T COG1607 106 RRLATSAYFTFVAV 119 (157)
T ss_pred ceEeeeEEEEEEEE
Confidence 2344555555443
No 64
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=95.77 E-value=0.082 Score=43.14 Aligned_cols=78 Identities=12% Similarity=-0.060 Sum_probs=57.6
Q ss_pred ceeehhHHHHHHHHHHhccCC---CC---CcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEE
Q 040957 162 GKVFGGQLVGQALAAASKTVD---CL---KIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLL 235 (430)
Q Consensus 162 ~~~~GG~~~a~al~Aa~~~~~---~~---~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~ 235 (430)
.++.+=..+||+..+...... .+ +....-++.|.+|..++..++++++.++.+++.....++++++|++++++.
T Consensus 46 Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~~~g~~v~~~~ 125 (131)
T cd01288 46 PGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYVDGKLVAEAE 125 (131)
T ss_pred CchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEECCEEEEEEE
Confidence 344444457776555432211 11 122335778999999999999999999999999999999999999999998
Q ss_pred Eecc
Q 040957 236 ASFQ 239 (430)
Q Consensus 236 ~sf~ 239 (430)
+.|.
T Consensus 126 ~~~~ 129 (131)
T cd01288 126 LMFA 129 (131)
T ss_pred EEEE
Confidence 8774
No 65
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=95.63 E-value=0.15 Score=42.61 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=56.6
Q ss_pred eeehhHHHHHHHHHHhccCCC--CC--cceee-eeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEEEe
Q 040957 163 KVFGGQLVGQALAAASKTVDC--LK--IVHSL-HCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLAS 237 (430)
Q Consensus 163 ~~~GG~~~a~al~Aa~~~~~~--~~--~~~s~-~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~~s 237 (430)
++.+-..+||+..+.....+. +. .+.++ .+.|.+|..++..+.++++..+.++++....+++.|+|++++.+.+.
T Consensus 62 G~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~~~g~~v~~~~~~ 141 (147)
T PRK00006 62 GVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVATVDGKLVAEAELM 141 (147)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEECCEEEEEEEEE
Confidence 344444467766553322211 11 12333 68899999998899999999998899999999999999999999988
Q ss_pred ccc
Q 040957 238 FQK 240 (430)
Q Consensus 238 f~~ 240 (430)
|..
T Consensus 142 ~~~ 144 (147)
T PRK00006 142 FAI 144 (147)
T ss_pred EEE
Confidence 754
No 66
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=95.58 E-value=0.071 Score=43.77 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCeeEEEEecCCCCCC-ChHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecce
Q 040957 311 SPPSLRYWFRAKGKLSD-DQALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVA 389 (430)
Q Consensus 311 ~~~~~~~W~R~~~~~~~-~~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~ 389 (430)
++++...=+...+..-+ ...+|--+.|-++|......++.. ....+.+|+|.+|.|..+...++=+..++.....
T Consensus 35 ~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~----~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~ 110 (148)
T KOG3328|consen 35 EPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMT----SGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRV 110 (148)
T ss_pred cCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhc----cCCCCceEEEEEhhhccccCCCCeEEEEEEEeec
Confidence 44556555665533322 445676677888897533322222 1223478999999999988899999999999999
Q ss_pred eCCeeeEEEEEEcc-CCCEEEEEeccceeccCC
Q 040957 390 SKARGFVSGEMFNT-KGELLVSLTQEALLRSPK 421 (430)
Q Consensus 390 ~~gr~~~~~~i~~~-~G~lvA~~~Q~~l~r~~~ 421 (430)
+.+.+..++++|.. +|+.+|.+++.-++++..
T Consensus 111 Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~ 143 (148)
T KOG3328|consen 111 GKTLAFTDVELRRKSTGKIIAKGRHTKYFRPAS 143 (148)
T ss_pred CceEEEEEEEEEEcCCCeEEEecceEEEeecCC
Confidence 99999999999997 699999999999999865
No 67
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=95.58 E-value=0.15 Score=41.22 Aligned_cols=76 Identities=16% Similarity=0.000 Sum_probs=57.2
Q ss_pred CceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEe--eeCCCeeEEEEEEE-ECCeeEEEEEEe
Q 040957 161 FGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRV--RDGNSFATRRVDAI-QKGNIIFTLLAS 237 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~l--r~Gr~~s~~~V~~~-Q~g~~~~~~~~s 237 (430)
..-++|.++++++..+.....++...+.++.+.|.+|..++..+.++++.+ +.++ +.+..+.+. |+|++++.+.+.
T Consensus 43 ~~ia~G~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~-~v~~~~~~~nq~G~~v~~g~a~ 121 (123)
T cd03455 43 DLYVNGPTLAGLVIRYVTDWAGPDARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDE-VVTVELWARNSEGDHVMAGTAT 121 (123)
T ss_pred ceEEEHHHHHHHHHHHHHHccCCcceEEEEEEEeeccccCCCEEEEEEEEEeeccCc-EEEEEEEEEcCCCCEEEeEEEE
Confidence 347899999998887766665544456788999999999988888877766 4444 666666665 889888887764
No 68
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=95.56 E-value=0.15 Score=42.20 Aligned_cols=78 Identities=10% Similarity=0.019 Sum_probs=57.1
Q ss_pred CceeehhHHHHHHHHHHhc-cCC----C-C-Cccee-eeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEE
Q 040957 161 FGKVFGGQLVGQALAAASK-TVD----C-L-KIVHS-LHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIF 232 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~-~~~----~-~-~~~~s-~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~ 232 (430)
..++.+-..+||+..+... ... . . ..+.+ -++.|.++..++..++++++..+..+.+....+++.++|++++
T Consensus 53 ~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~~~~~g~~va 132 (140)
T TIGR01750 53 MPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGEATVDGKVVA 132 (140)
T ss_pred ChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEEEEECCEEEE
Confidence 3345555667776654321 111 1 1 12333 3888999999988999999999999999999999999999999
Q ss_pred EEEEec
Q 040957 233 TLLASF 238 (430)
Q Consensus 233 ~~~~sf 238 (430)
.+...|
T Consensus 133 ~~~~~~ 138 (140)
T TIGR01750 133 EAEITF 138 (140)
T ss_pred EEEEEE
Confidence 998876
No 69
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.38 E-value=0.12 Score=43.06 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEc-cCCCE
Q 040957 329 QALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFN-TKGEL 407 (430)
Q Consensus 329 ~~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~-~~G~l 407 (430)
..+|=-.++-++|..+...++.... ......|++.++.|.+|...++ +..+.+..+.+.-....+.++++ ..|+|
T Consensus 51 G~~HGG~i~alaD~a~~~a~~~~~~---~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~~~l 126 (141)
T COG2050 51 GILHGGVIAALADSAAGLAANSLLG---VVALAVTLELNINFLRPVKEGD-VTAEARVLHLGRRVAVVEIEVKNDEGGRL 126 (141)
T ss_pred ceeeHHHHHHHHHHHHHHHHhhccC---ccceeEEEEEEehhccCCCCCe-EEEEEEEEeeCCEEEEEEEEEEECCCCeE
Confidence 3446666777889754444443332 1123479999999999888888 88888888887777799999995 56699
Q ss_pred EEEEeccceeccCC
Q 040957 408 LVSLTQEALLRSPK 421 (430)
Q Consensus 408 vA~~~Q~~l~r~~~ 421 (430)
||.++-..++..++
T Consensus 127 va~~~~t~~v~~~~ 140 (141)
T COG2050 127 VAKGTGTYAVLRKR 140 (141)
T ss_pred EEEEEEEEEEecCC
Confidence 99999888776543
No 70
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=95.31 E-value=0.19 Score=38.89 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=64.3
Q ss_pred CCceeehhHHHHHHHHHHhccC-------------CCCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE
Q 040957 160 KFGKVFGGQLVGQALAAASKTV-------------DCLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ 226 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~-------------~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q 226 (430)
..+.+++|..+..+-.|+.... .....+..+++.|.+|...+..+.++.+..+-+++...+.++++.
T Consensus 14 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 93 (110)
T cd00586 14 AAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGRKSFTFEQEIFR 93 (110)
T ss_pred CCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCcEEEEEEEEEEC
Confidence 3568999999888877765322 123456778999999999988999999999999999999999988
Q ss_pred C-CeeEEEEEEec
Q 040957 227 K-GNIIFTLLASF 238 (430)
Q Consensus 227 ~-g~~~~~~~~sf 238 (430)
+ |++++.+...+
T Consensus 94 ~~g~~~a~~~~~~ 106 (110)
T cd00586 94 EDGELLATAETVL 106 (110)
T ss_pred CCCeEEEEEEEEE
Confidence 6 99988887654
No 71
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.00 E-value=0.043 Score=55.36 Aligned_cols=94 Identities=22% Similarity=0.284 Sum_probs=77.1
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHhhceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCC
Q 040957 5 EVIEFLSCVPLLQRLPGSSLKRIADIVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYD 84 (430)
Q Consensus 5 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~ 84 (430)
+....|.++..|++|-...++.++.......|+.+.++|+.|+.++.+||+++|.|-+- +. .+-|-.
T Consensus 34 N~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~--------gq-----i~mp~~ 100 (1283)
T KOG3542|consen 34 NVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE--------GQ-----IYMPYG 100 (1283)
T ss_pred hHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee--------cc-----eecCcc
Confidence 45668889999999999999999999999999999999999999999999999998776 11 233334
Q ss_pred eeccCCCCCcceeeEEEecceEEEEecc
Q 040957 85 YFGHGSPTIFRQGDVIALTELTCLVLPH 112 (430)
Q Consensus 85 ~fGe~~~~~~~~~~v~A~~~~~~l~i~~ 112 (430)
.||.. .++.|.+++..+.+++.+.|+.
T Consensus 101 ~fgkr-~g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 101 CFGKR-TGQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred ccccc-cccccccceeeecccceeeeec
Confidence 56664 4455888888899999988854
No 72
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=94.85 E-value=0.39 Score=39.04 Aligned_cols=76 Identities=21% Similarity=-0.018 Sum_probs=55.6
Q ss_pred CceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCCCeEEEEEEe----eeCCCeeEEEEEEE-ECCeeEEEEE
Q 040957 161 FGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNIPIIYQVHRV----RDGNSFATRRVDAI-QKGNIIFTLL 235 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~l----r~Gr~~s~~~V~~~-Q~g~~~~~~~ 235 (430)
...++|-.+++++........++...+.++.+.|++|..++..+.++++.+ +.|+.+.+..+.+. |+|+++++++
T Consensus 44 ~~i~~G~~~~~~~~~~~~~~~~~~~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~g~ 123 (127)
T cd03453 44 GVIAHGMLTMGLLGRLVTDWVGDPGRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKKVLGR 123 (127)
T ss_pred CcEecHHHHHHHHHHHHHHHcCCccceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEEEE
Confidence 457888888888766665555534456788999999999988888877764 23556667777775 7888887776
Q ss_pred E
Q 040957 236 A 236 (430)
Q Consensus 236 ~ 236 (430)
+
T Consensus 124 a 124 (127)
T cd03453 124 A 124 (127)
T ss_pred E
Confidence 5
No 73
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=94.47 E-value=0.43 Score=39.10 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=46.0
Q ss_pred CCcceeeeeeeccCcCCCCCeEEEEEEee-----eCCCeeEEEEEEEECCeeEEEEEEecc
Q 040957 184 LKIVHSLHCYFLLVGDLNIPIIYQVHRVR-----DGNSFATRRVDAIQKGNIIFTLLASFQ 239 (430)
Q Consensus 184 ~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr-----~Gr~~s~~~V~~~Q~g~~~~~~~~sf~ 239 (430)
.+.+.++.+.|.++...+.|+.++++..- .+++-....|+++|+|++++++.++|+
T Consensus 71 ~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q~g~~~a~~~~~~t 131 (132)
T PF03756_consen 71 QFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQGGRVVATASMTFT 131 (132)
T ss_pred eEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEECCEEEEEEEEEEE
Confidence 35689999999999877779998887663 334577889999999999999998874
No 74
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=94.25 E-value=0.52 Score=38.24 Aligned_cols=80 Identities=14% Similarity=0.013 Sum_probs=59.6
Q ss_pred CCCceeehhHHHHHHHHHHhccCCC--------CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCee
Q 040957 159 PKFGKVFGGQLVGQALAAASKTVDC--------LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNI 230 (430)
Q Consensus 159 ~~~~~~~GG~~~a~al~Aa~~~~~~--------~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~ 230 (430)
|...++.+-..+||+..+....... .+....-.+.|.++..++..++++++....+..+....+++..+|++
T Consensus 42 p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~~~~~~g~~ 121 (131)
T cd00493 42 PVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAYVDGKL 121 (131)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEEEEEECCEE
Confidence 3445566666778876666543321 11122347889999999889999999999888899999999999999
Q ss_pred EEEEEEec
Q 040957 231 IFTLLASF 238 (430)
Q Consensus 231 ~~~~~~sf 238 (430)
++.+.+++
T Consensus 122 v~~~~~~~ 129 (131)
T cd00493 122 VAEAELMA 129 (131)
T ss_pred EEEEEEEE
Confidence 99988665
No 75
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=93.89 E-value=0.82 Score=36.85 Aligned_cols=79 Identities=14% Similarity=-0.034 Sum_probs=55.4
Q ss_pred CCceeehhHHHHHHHHHHhccCCC-CCcceeeeeeeccCcCCCCCeEEEEEEee--eCCCeeEEEEEEE-ECCeeEEEEE
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDC-LKIVHSLHCYFLLVGDLNIPIIYQVHRVR--DGNSFATRRVDAI-QKGNIIFTLL 235 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~-~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr--~Gr~~s~~~V~~~-Q~g~~~~~~~ 235 (430)
++..++|..+++++..+.....+. +....+..+.|++|..++.++.++++.++ .++.....++++. |+|++++.+.
T Consensus 44 ~~~i~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~~g~~v~~g~ 123 (128)
T cd03449 44 GGRIAHGMLTASLISAVLGTLLPGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQNGEVVIEGE 123 (128)
T ss_pred CCceecHHHHHHHHHHHHhccCCCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeCCCCEEEEEE
Confidence 345789999988766555443332 22334679999999999888888777764 3346777777776 5589888887
Q ss_pred Eec
Q 040957 236 ASF 238 (430)
Q Consensus 236 ~sf 238 (430)
+..
T Consensus 124 ~~~ 126 (128)
T cd03449 124 AVV 126 (128)
T ss_pred EEE
Confidence 653
No 76
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.39 E-value=0.99 Score=36.25 Aligned_cols=77 Identities=16% Similarity=-0.007 Sum_probs=56.0
Q ss_pred CCceeehhHHHHHHHHHHhccCCC--CCcceeeeeeeccCcCCCCCeEEEEEEeeeC----CCeeEEEEEEE-ECCeeEE
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDC--LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDG----NSFATRRVDAI-QKGNIIF 232 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~--~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~G----r~~s~~~V~~~-Q~g~~~~ 232 (430)
....++|.++++++..++....+. ........+.|.+|..++..+.++.+.+..- +...+..+.+. |+|++++
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~ 120 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVVL 120 (127)
T ss_pred CCceechHHHHHHHHhhhhhhccCcccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEEE
Confidence 345799999999998888777652 4456678999999999988888888777542 23555555554 5677776
Q ss_pred EEEE
Q 040957 233 TLLA 236 (430)
Q Consensus 233 ~~~~ 236 (430)
.+.+
T Consensus 121 ~g~~ 124 (127)
T cd03441 121 SGEA 124 (127)
T ss_pred EEEE
Confidence 6554
No 77
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=93.05 E-value=0.57 Score=38.96 Aligned_cols=80 Identities=11% Similarity=-0.040 Sum_probs=53.9
Q ss_pred CCceeehhHHHHHHHHHHhccCCC-CC-cceeeeeeeccCcCCCCCeEEEEEEe--ee-----CCCeeEEEEEEE-ECCe
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDC-LK-IVHSLHCYFLLVGDLNIPIIYQVHRV--RD-----GNSFATRRVDAI-QKGN 229 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~-~~-~~~s~~~~Fl~~~~~~~pi~~~V~~l--r~-----Gr~~s~~~V~~~-Q~g~ 229 (430)
+...++|.++++++........+. .. ....-++.|.+|..++..+.++++.+ +. +..+.+.++++. |+|+
T Consensus 52 ~~~ia~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~ 131 (146)
T cd03451 52 GRRLVNSLFTLSLALGLSVNDTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGE 131 (146)
T ss_pred CCccccHHhHHHHHhhheehhccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCC
Confidence 445789999888775433222221 11 12223899999999988787766655 32 336888888887 9999
Q ss_pred eEEEEEEecc
Q 040957 230 IIFTLLASFQ 239 (430)
Q Consensus 230 ~~~~~~~sf~ 239 (430)
+++.+..+..
T Consensus 132 ~V~~~~~~~~ 141 (146)
T cd03451 132 PVLSFERTAL 141 (146)
T ss_pred EEEEEEehhE
Confidence 9988887654
No 78
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=92.96 E-value=1 Score=37.14 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=49.9
Q ss_pred CCceeehhHHHHHHHHHHhccCCCCCcceee----eeeeccCcCCCCCeEEEEEEeee------CCCeeEEEEEEE-ECC
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDCLKIVHSL----HCYFLLVGDLNIPIIYQVHRVRD------GNSFATRRVDAI-QKG 228 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~----~~~Fl~~~~~~~pi~~~V~~lr~------Gr~~s~~~V~~~-Q~g 228 (430)
+...++|.+++|++..+......+....... .+.|.+|..++..+.++++.+.. ++.+.+.++.+. |+|
T Consensus 49 ~~~ia~G~~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g 128 (140)
T cd03446 49 GERIAHGLLTLSIATGLLQRLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRG 128 (140)
T ss_pred CCceeccccHHHHHhhHhhhcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCC
Confidence 3457888888887765543322221112222 78899999998888888777643 223555566654 889
Q ss_pred eeEEEEEEe
Q 040957 229 NIIFTLLAS 237 (430)
Q Consensus 229 ~~~~~~~~s 237 (430)
++++++.+.
T Consensus 129 ~~v~~~~~~ 137 (140)
T cd03446 129 EVVQSGEMS 137 (140)
T ss_pred CEEEEEEEe
Confidence 988877654
No 79
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=92.72 E-value=0.53 Score=36.27 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=50.6
Q ss_pred eeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecccee
Q 040957 361 SLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 361 ~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
....+..+.|++|+..++-+..+++.....+.+.....++++.+|+++|.+....++
T Consensus 52 ~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~~ 108 (110)
T cd00586 52 LVVVELEIDYLRPLRLGDRLTVETRVLRLGRKSFTFEQEIFREDGELLATAETVLVC 108 (110)
T ss_pred EEEEEeEeeEcCccCCCCEEEEEEEEEecCcEEEEEEEEEECCCCeEEEEEEEEEEE
Confidence 456778999999999999999999999999999999999999899999999886654
No 80
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=92.48 E-value=2.4 Score=33.66 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=49.4
Q ss_pred eeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccC-----CCEEEEEeccceecc
Q 040957 361 SLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTK-----GELLVSLTQEALLRS 419 (430)
Q Consensus 361 ~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~-----G~lvA~~~Q~~l~r~ 419 (430)
..+++ ++.|++|+..++.+..+.+....++.....+.++++.+ ++++|++........
T Consensus 52 ~~~~~-~~~f~~p~~~gd~l~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 52 TASVD-RIDFLKPVRVGDVVELSARVVYTGRTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred EEEEC-ceEEcCccccCcEEEEEEEEEEecCCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 44555 89999999999999999999999999999999999876 468898888776653
No 81
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=92.39 E-value=2.3 Score=34.53 Aligned_cols=77 Identities=17% Similarity=0.085 Sum_probs=52.3
Q ss_pred CceeehhHHHHHHHHHHhccCC--CCCcceeeeeeeccCcCCCCCeEEEEEEe--eeCCCeeEEEEEE-EEC-CeeEEEE
Q 040957 161 FGKVFGGQLVGQALAAASKTVD--CLKIVHSLHCYFLLVGDLNIPIIYQVHRV--RDGNSFATRRVDA-IQK-GNIIFTL 234 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~--~~~~~~s~~~~Fl~~~~~~~pi~~~V~~l--r~Gr~~s~~~V~~-~Q~-g~~~~~~ 234 (430)
+.-++|-++++++..+.....+ +.....+.++.|++|..++..+.++++.+ +.|+. +..+++ .|+ |++++.+
T Consensus 42 ~~iahG~l~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~--~~~~~~~nq~~g~~V~~g 119 (126)
T cd03447 42 GTITHGMYTSAAVRALVETWAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRK--VIKVEARNEETGELVLRG 119 (126)
T ss_pred CCeechhHHHHHHHHHHHHhccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeE--EEEEEEEECCCCCEEEEE
Confidence 4578998988888666544333 22345668999999999988888766655 45543 445555 456 7888888
Q ss_pred EEecc
Q 040957 235 LASFQ 239 (430)
Q Consensus 235 ~~sf~ 239 (430)
++...
T Consensus 120 ~~~v~ 124 (126)
T cd03447 120 EAEVE 124 (126)
T ss_pred EEEEe
Confidence 77653
No 82
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=92.29 E-value=0.88 Score=37.00 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=53.2
Q ss_pred eeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccC
Q 040957 360 ASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSP 420 (430)
Q Consensus 360 ~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~ 420 (430)
..+-+++.+.|++++..++.+..++.....++-+....-++++.+|+++|++....++-..
T Consensus 53 ~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~v~~d~ 113 (130)
T PRK10800 53 AFVVRKMTVEYYAPARLDDMLEVQSEITSMRGTSLTFTQRIVNAEGTLLNEAEVLIVCVDP 113 (130)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEeeCcEEEEEEEEEEcCCCeEEEEEEEEEEEEEC
Confidence 4567799999999999999999999999999887778888999999999999987777654
No 83
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=92.25 E-value=1.4 Score=36.59 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=53.3
Q ss_pred CCceeehhHHHHHHHHHHhccCCCCCcceeeeeeeccCcCCCC-----CeEE--EEEEeeeCCCeeEEEEEEEECCee-E
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDCLKIVHSLHCYFLLVGDLNI-----PIIY--QVHRVRDGNSFATRRVDAIQKGNI-I 231 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~~~~~~s~~~~Fl~~~~~~~-----pi~~--~V~~lr~Gr~~s~~~V~~~Q~g~~-~ 231 (430)
.+.-++|.+.++++.....+..+..-.+.+..+.|.+|..+++ .+.+ +|..+++++...+..+.+.|+|+. +
T Consensus 53 ~~~iahG~~~~a~~~~~~~~~~~~~~~~~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~~~~~~ 132 (142)
T PRK13693 53 DTAIAHGMLTMGLGGGYVTSWVGDPGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGKKIF 132 (142)
T ss_pred CCcEecHHHHHHHHHHHHHHhcCCCcceEEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEECCcEEE
Confidence 3457999999998866655444322235688999999997522 4544 555557788899999999998875 4
Q ss_pred EEEEE
Q 040957 232 FTLLA 236 (430)
Q Consensus 232 ~~~~~ 236 (430)
..+.+
T Consensus 133 ~~~~~ 137 (142)
T PRK13693 133 GRAIA 137 (142)
T ss_pred EEEEE
Confidence 44444
No 84
>PLN02647 acyl-CoA thioesterase
Probab=91.93 E-value=1.6 Score=43.40 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=51.9
Q ss_pred CCceeehhHHHHHHHHHHhc----cCCCCCcceee-eeeeccCcCCCCCeEEEEEEee-----eCCCeeEEEEEEEE---
Q 040957 160 KFGKVFGGQLVGQALAAASK----TVDCLKIVHSL-HCYFLLVGDLNIPIIYQVHRVR-----DGNSFATRRVDAIQ--- 226 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~----~~~~~~~~~s~-~~~Fl~~~~~~~pi~~~V~~lr-----~Gr~~s~~~V~~~Q--- 226 (430)
..+.+|||+++.++..+|.. .........|+ ++.|++|...+.-+.++...+. -|++.-+..|.+.-
T Consensus 304 ~~g~iFGG~LM~~~De~A~i~A~r~a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~ 383 (437)
T PLN02647 304 IHGRIFGGFLMRRAFELAFSTAYAFAGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRP 383 (437)
T ss_pred CCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcC
Confidence 35689999999998554443 23222222233 6789999999877776554444 45566666666542
Q ss_pred ---CCeeEEEEEEecccc
Q 040957 227 ---KGNIIFTLLASFQKE 241 (430)
Q Consensus 227 ---~g~~~~~~~~sf~~~ 241 (430)
.++.+.++..+|-..
T Consensus 384 ~~~~~~~~n~~~fTfva~ 401 (437)
T PLN02647 384 ELRSSEVSNTFYFTFTVR 401 (437)
T ss_pred CCCcceEEEEEEEEEEEe
Confidence 245666777777654
No 85
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=91.55 E-value=0.98 Score=36.35 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=48.4
Q ss_pred CcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEEEec
Q 040957 185 KIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASF 238 (430)
Q Consensus 185 ~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~~sf 238 (430)
..+..+|+.|.++...+.++.+++....-|++...+..+++.+|++++.+...+
T Consensus 53 ~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~~~~~~~~i~~~g~~~a~~~~~~ 106 (126)
T TIGR02799 53 FVVRSMELDYLKPARLDDLLTVTTRVVELKGASLVFAQEVRRGDTLLCEATVEV 106 (126)
T ss_pred EEEEEEEEEEcCcccCCCEEEEEEEEEecCceEEEEEEEEEeCCEEEEEEEEEE
Confidence 456789999999999999999999999999999999999999999888887654
No 86
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=91.27 E-value=4.4 Score=33.82 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=63.9
Q ss_pred cceeecccCCCCCCCceeehhHHHHHHHHHHhccCCCCC--c--ceee-eeeeccCcCCCCCeEEEEEEeeeC-CCeeEE
Q 040957 147 VNIFQGITLPDAPKFGKVFGGQLVGQALAAASKTVDCLK--I--VHSL-HCYFLLVGDLNIPIIYQVHRVRDG-NSFATR 220 (430)
Q Consensus 147 ~~~f~~~~~~~~~~~~~~~GG~~~a~al~Aa~~~~~~~~--~--~~s~-~~~Fl~~~~~~~pi~~~V~~lr~G-r~~s~~ 220 (430)
+-.|.+..+ ..|...++.+=-.+||+.........+.. . ..++ .+-|.+++.|+-.+.++++.++.+ +.+...
T Consensus 45 epfF~gHFP-~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~ 123 (147)
T COG0764 45 EPFFTGHFP-GDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKA 123 (147)
T ss_pred CCeeCCcCC-CCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEE
Confidence 334444443 23444444444445666544444333211 1 2333 677999999988999999999999 999999
Q ss_pred EEEEEECCeeEEEEEEeccc
Q 040957 221 RVDAIQKGNIIFTLLASFQK 240 (430)
Q Consensus 221 ~V~~~Q~g~~~~~~~~sf~~ 240 (430)
..++.-+|+++..+...|..
T Consensus 124 ~~~a~Vdg~~v~~a~~~~~~ 143 (147)
T COG0764 124 KGVATVDGKVVAEAELLFAG 143 (147)
T ss_pred EEEEEECCEEEEEEEEEEEE
Confidence 99999999999999888764
No 87
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=90.84 E-value=0.51 Score=44.52 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=51.1
Q ss_pred CCCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEEEecc
Q 040957 183 CLKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASFQ 239 (430)
Q Consensus 183 ~~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~~sf~ 239 (430)
....+-+++.|||.|...+.-+++....|-.||.++...|+++-+|..+.-|.++.+
T Consensus 373 ~niiIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idvei~~~~~ivaKAiv~~q 429 (432)
T COG4109 373 RNIIIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEIYHDGQIVAKAIVTVQ 429 (432)
T ss_pred CceEEEeeeeeeecceecccEEEEeeeeeccccccceeEEEEeeCcchhhhheeeee
Confidence 356688999999999999999999999999999999999999999998877776543
No 88
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=90.54 E-value=2 Score=35.47 Aligned_cols=76 Identities=11% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhhhhhh---cccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecc-----------eeCCeee-
Q 040957 331 LHRCVVAFASDLIFSSVS---LNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPV-----------ASKARGF- 395 (430)
Q Consensus 331 ~~~~~la~~sD~~~~~~~---~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~-----------~~~gr~~- 395 (430)
.|-.+++-++|..+...+ +... ......+++|.+|.|++|... + +..+++.+. ...||+.
T Consensus 40 ~hGG~l~tlad~a~~~~~~~~~~~~---~~~~~~vt~~~~i~yl~P~~~-~-~~a~~~~~~~~~~~~~~~~l~~~gr~~~ 114 (138)
T TIGR02447 40 MFGGSLYTLATLSGWGLLWLRLQEL---GIDGDIVIADSHIRYLAPVTG-D-PVANCEAPDLESWEAFLATLQRGGKARV 114 (138)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHh---CCCCcEEEEEeeeEEcCCcCC-C-eEEEEEcCCHHHHHHHHHHHHhCCceEE
Confidence 455566667775332222 1111 111346889999999998765 3 454555532 4455554
Q ss_pred -EEEEEEccCCCEEEEEe
Q 040957 396 -VSGEMFNTKGELLVSLT 412 (430)
Q Consensus 396 -~~~~i~~~~G~lvA~~~ 412 (430)
.+++|+ +||+++|+++
T Consensus 115 ~~~~~v~-~~~~lvA~~~ 131 (138)
T TIGR02447 115 KLEAQIS-SDGKLAATFS 131 (138)
T ss_pred EEEEEEE-ECCEEEEEEE
Confidence 899999 5789999987
No 89
>PLN02647 acyl-CoA thioesterase
Probab=90.35 E-value=1.8 Score=43.07 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=60.2
Q ss_pred CceeehhHHHHHH----HHHHhccCCC-C---C--cceee---eeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEEC
Q 040957 161 FGKVFGGQLVGQA----LAAASKTVDC-L---K--IVHSL---HCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQK 227 (430)
Q Consensus 161 ~~~~~GG~~~a~a----l~Aa~~~~~~-~---~--~~~s~---~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~ 227 (430)
.+.+|||.++... ..+|.+++.. + . .+..+ ++.|+.|...+.-+.+.-...+-|||--.+.|+++|.
T Consensus 108 ~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~ 187 (437)
T PLN02647 108 WNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVTWVGRSSMEIQLEVIQP 187 (437)
T ss_pred CCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEEEecCCeEEEEEEEEEc
Confidence 3579999998764 4555555532 1 1 22222 5679999999889999999999999999999999995
Q ss_pred C--------eeEEEEEEeccccC
Q 040957 228 G--------NIIFTLLASFQKEE 242 (430)
Q Consensus 228 g--------~~~~~~~~sf~~~~ 242 (430)
. ..+.+|.++|-..+
T Consensus 188 ~~~~~~~~~~~~~~a~FtfVA~D 210 (437)
T PLN02647 188 TKDESNTSDSVALTANFTFVARD 210 (437)
T ss_pred cccCCCCcEEEEEEEEEEEEEEc
Confidence 3 35677777775543
No 90
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=89.95 E-value=2.1 Score=36.36 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=50.6
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecce----eCCeeeEEEEEEccCCCEEEEEeccceeccCCCCCCC
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVA----SKARGFVSGEMFNTKGELLVSLTQEALLRSPKPKPIP 426 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~----~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~~~~~~~ 426 (430)
-+.-.+.|++|+.+++=+..+.+.... ..|....+.++.|++|++|+++....++|.-....+.
T Consensus 86 ~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~~~~~~~r~~~~~~~~ 153 (159)
T PRK13692 86 QVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQETYTTLAGRAGEDGEEG 153 (159)
T ss_pred eeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEEEEEEEEecCCcCCcc
Confidence 344578899999999988888777533 2356777888999999999999999999987765443
No 91
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=89.84 E-value=3.1 Score=41.67 Aligned_cols=72 Identities=13% Similarity=-0.009 Sum_probs=52.5
Q ss_pred HHHHHHHHHhc-cCC--CCC--cceee-eeeeccCcCCCCCeEEEEEEee-eCCCeeEEEEEEEECCeeEEEEEEeccc
Q 040957 169 LVGQALAAASK-TVD--CLK--IVHSL-HCYFLLVGDLNIPIIYQVHRVR-DGNSFATRRVDAIQKGNIIFTLLASFQK 240 (430)
Q Consensus 169 ~~a~al~Aa~~-~~~--~~~--~~~s~-~~~Fl~~~~~~~pi~~~V~~lr-~Gr~~s~~~V~~~Q~g~~~~~~~~sf~~ 240 (430)
.+||+..+... ..+ ... .+.++ .+.|.+|..++..++++++.++ ..+.+.....+++++|++++.+...|.-
T Consensus 381 aMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~vdGelVaeael~~~v 459 (464)
T PRK13188 381 AMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAYVNGKLVCEAELMAQI 459 (464)
T ss_pred HHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEEECCEEEEEEEEEEEE
Confidence 45787655432 211 111 23444 7889999999889999999776 5567888999999999999999888754
No 92
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=88.90 E-value=4.7 Score=40.78 Aligned_cols=82 Identities=11% Similarity=-0.066 Sum_probs=57.1
Q ss_pred CCceeehhHHHHHHHHHHhccCCC-CCcceeeeeeeccCcCCCCCeEEEEEEe--eeCCCeeEEEEEE-EECCeeEEEEE
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDC-LKIVHSLHCYFLLVGDLNIPIIYQVHRV--RDGNSFATRRVDA-IQKGNIIFTLL 235 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~-~~~~~s~~~~Fl~~~~~~~pi~~~V~~l--r~Gr~~s~~~V~~-~Q~g~~~~~~~ 235 (430)
++..++|-++++++.......++. +....+.++.|.+|..++..+.++++.+ +.++.+.+.++++ -|+|++++.++
T Consensus 57 g~~IahG~l~~s~~~~l~~~~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq~G~~V~~g~ 136 (466)
T PRK08190 57 HHVVAHGMWGGALISAVLGTRLPGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQDGEVVITGT 136 (466)
T ss_pred CCceeCHHHHHHHHHHHHhhhCCCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeCCCCEEEEEE
Confidence 345788888888765444444432 2234557999999999988777666554 6677787787777 48999988887
Q ss_pred Eecccc
Q 040957 236 ASFQKE 241 (430)
Q Consensus 236 ~sf~~~ 241 (430)
+..-.+
T Consensus 137 ~~~l~~ 142 (466)
T PRK08190 137 AEVIAP 142 (466)
T ss_pred EEeecc
Confidence 766544
No 93
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=88.84 E-value=0.71 Score=37.65 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=35.0
Q ss_pred eeecceeeeccCCCCCCCeEEeEEeecceeC----Cee---eEEEEEEccCCCEEEE
Q 040957 361 SLSLDHSMWFHRSFRADDWLLFVIVSPVASK----ARG---FVSGEMFNTKGELLVS 410 (430)
Q Consensus 361 ~~sld~si~f~~~~~~~~W~l~~~~~~~~~~----gr~---~~~~~i~~~~G~lvA~ 410 (430)
..-.++.+.||+|+.+++-+..+.+...+.. |++ ..+.+++|+||++||+
T Consensus 75 ~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t 131 (132)
T PF13452_consen 75 LVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVAT 131 (132)
T ss_dssp EEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE
T ss_pred EEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEe
Confidence 4455688999999999988877766555432 333 5678999999999997
No 94
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=88.31 E-value=3.4 Score=33.31 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=50.1
Q ss_pred CceeehhHHHHHHHHHHhccCCC--CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEE
Q 040957 161 FGKVFGGQLVGQALAAASKTVDC--LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFT 233 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~--~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~ 233 (430)
...++|-++++++..+......+ .-.+.+..+.|.+|.-++..+.++++ ..|+ ..+.++.+.++|+++..
T Consensus 44 ~~iahG~~t~a~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~~gDtl~~~~~--~~~~-~v~~~~~~~~~g~~v~~ 115 (122)
T cd03448 44 RPILHGLCTYGFAARAVLEAFADGDPARFKAIKVRFSSPVFPGETLRTEMW--KEGN-RVIFQTKVVERDVVVLS 115 (122)
T ss_pred CceehhHHHHHHHHHHHHHHhcCCCcceeEEEEEEEcCCccCCCEEEEEEE--EeCC-EEEEEEEEccCCcEEEE
Confidence 45789998888876665544422 23467789999999999888888887 3455 55777777777776544
No 95
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=88.18 E-value=2.9 Score=34.38 Aligned_cols=45 Identities=11% Similarity=-0.039 Sum_probs=38.3
Q ss_pred eeeeeccCcCCCC-CeEEEEEEee---eCCCeeEEEEEEEECCeeEEEE
Q 040957 190 LHCYFLLVGDLNI-PIIYQVHRVR---DGNSFATRRVDAIQKGNIIFTL 234 (430)
Q Consensus 190 ~~~~Fl~~~~~~~-pi~~~V~~lr---~Gr~~s~~~V~~~Q~g~~~~~~ 234 (430)
-.+.|.++..|+. .++++|+..+ .+..++...++++.+|+.++++
T Consensus 89 ~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~vdg~~v~~~ 137 (138)
T PF07977_consen 89 RNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAYVDGELVAEA 137 (138)
T ss_dssp EEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred cEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEEECCEEEEEE
Confidence 4778999999987 8999999999 9999999999999999999876
No 96
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=87.96 E-value=3.1 Score=34.61 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=54.7
Q ss_pred cccceeecccCCCCC--CCceeehhHHHHHHHHHHhccC---------CCCCcceeeeeeeccCcCCCCCeEEEEEEe--
Q 040957 145 VEVNIFQGITLPDAP--KFGKVFGGQLVGQALAAASKTV---------DCLKIVHSLHCYFLLVGDLNIPIIYQVHRV-- 211 (430)
Q Consensus 145 ~~~~~f~~~~~~~~~--~~~~~~GG~~~a~al~Aa~~~~---------~~~~~~~s~~~~Fl~~~~~~~pi~~~V~~l-- 211 (430)
.++..+...-+.... .-+.+|||-+.++|..+.-.-+ ..+-.+...++.|++|...+ +.-+++.-
T Consensus 25 ~~~~~l~~~APL~pN~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~~d--~~A~~~~~~~ 102 (144)
T PF09500_consen 25 YTGQRLELSAPLAPNINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVTGD--FTARCSLPEP 102 (144)
T ss_dssp EETTEEEEE--SGGGB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S---S----EEEEE----
T ss_pred EcCCEEEEeccCCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCCCC--cEEEEecccc
Confidence 345555555444322 2348999999999988874322 23455777899999998754 44444444
Q ss_pred -----------eeCCCeeEEEEEEEECCeeEEEEEEec
Q 040957 212 -----------RDGNSFATRRVDAIQKGNIIFTLLASF 238 (430)
Q Consensus 212 -----------r~Gr~~s~~~V~~~Q~g~~~~~~~~sf 238 (430)
|.||---+..|.++.+|+.+...+..|
T Consensus 103 ~~~~~~~~~l~~~grari~l~~~i~~~~~~~a~f~G~y 140 (144)
T PF09500_consen 103 EDWERFLQTLARGGRARITLEVEIYSGGELAAEFTGRY 140 (144)
T ss_dssp ---S---GGGGCTS-EEEEEEEEEEETTEEEEEEEEEE
T ss_pred chhHHHHHHHHcCCcEEEEEEEEEEECCEEEEEEEEEE
Confidence 567777788899999999988877766
No 97
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=86.91 E-value=2.9 Score=34.59 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=44.1
Q ss_pred eeeccCCCCCCCeEEeEEeeccee-------CCeeeEEEEEEccCCCEEEEEeccceeccC
Q 040957 367 SMWFHRSFRADDWLLFVIVSPVAS-------KARGFVSGEMFNTKGELLVSLTQEALLRSP 420 (430)
Q Consensus 367 si~f~~~~~~~~W~l~~~~~~~~~-------~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~ 420 (430)
++.|++|+.+++=+.++.+..... .|....++.+.+++|++|+++.-..+++.+
T Consensus 85 ~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 85 EVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTALVPKR 145 (146)
T ss_pred EEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhEEEcC
Confidence 789999999998888877776554 257777888889999999999988888743
No 98
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=86.86 E-value=2.9 Score=33.54 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=42.6
Q ss_pred cceeeeccCCCCCCCeEEeEEeecceeC--CeeeEEEEEEccCCCEEEEEec
Q 040957 364 LDHSMWFHRSFRADDWLLFVIVSPVASK--ARGFVSGEMFNTKGELLVSLTQ 413 (430)
Q Consensus 364 ld~si~f~~~~~~~~W~l~~~~~~~~~~--gr~~~~~~i~~~~G~lvA~~~Q 413 (430)
....+.|++|+.+++-+..+.+...... +....+..+++++|++|+++.=
T Consensus 73 ~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~~g~~v~~g~~ 124 (128)
T cd03449 73 LSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQNGEVVIEGEA 124 (128)
T ss_pred EEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 4568999999999999999998877766 7778888999999999998763
No 99
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=86.82 E-value=5.9 Score=32.54 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=49.8
Q ss_pred CceeehhHHHHHHHHHHhccCCC---CCccee-eeeeeccCcCCCCCeEEEEEEe--ee-----CCCeeEEEEEEE-ECC
Q 040957 161 FGKVFGGQLVGQALAAASKTVDC---LKIVHS-LHCYFLLVGDLNIPIIYQVHRV--RD-----GNSFATRRVDAI-QKG 228 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~---~~~~~s-~~~~Fl~~~~~~~pi~~~V~~l--r~-----Gr~~s~~~V~~~-Q~g 228 (430)
+..++|.++++.+.......... ....++ ..+.|.+|..++..+.++++.+ +. |+.+.+..+++. |+|
T Consensus 48 ~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g 127 (140)
T cd03454 48 GLAASGWHTAAITMRLLVDAGLSGSASGGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRG 127 (140)
T ss_pred CeeechHHHHHHHHHhhhhhccccceEEEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCC
Confidence 44678877777765443222211 112233 3889999999987777766654 43 456777777776 789
Q ss_pred eeEEEEEEe
Q 040957 229 NIIFTLLAS 237 (430)
Q Consensus 229 ~~~~~~~~s 237 (430)
++++++..+
T Consensus 128 ~~v~~~~~~ 136 (140)
T cd03454 128 EVVLTFEAT 136 (140)
T ss_pred CEEEEEEeh
Confidence 988887754
No 100
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=86.69 E-value=4 Score=32.70 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=51.7
Q ss_pred eeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceecc
Q 040957 360 ASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRS 419 (430)
Q Consensus 360 ~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~ 419 (430)
..+..++++.|++++..++.+.++++....++-+....-+++ .+|+++|.+.+..+...
T Consensus 52 ~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~~~~~~~~i~-~~g~~~a~~~~~~v~vd 110 (126)
T TIGR02799 52 VFVVRSMELDYLKPARLDDLLTVTTRVVELKGASLVFAQEVR-RGDTLLCEATVEVACVD 110 (126)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEecCceEEEEEEEEE-eCCEEEEEEEEEEEEEE
Confidence 456779999999999999999999999999999999999999 58999999988766554
No 101
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=85.85 E-value=13 Score=31.23 Aligned_cols=86 Identities=13% Similarity=-0.013 Sum_probs=58.2
Q ss_pred eeecccCCCCCCCceeehhHHHHHHHHHHhccCCC-------CCc---ceeeeeeeccCcCCCC-CeEEEEEEeeeC---
Q 040957 149 IFQGITLPDAPKFGKVFGGQLVGQALAAASKTVDC-------LKI---VHSLHCYFLLVGDLNI-PIIYQVHRVRDG--- 214 (430)
Q Consensus 149 ~f~~~~~~~~~~~~~~~GG~~~a~al~Aa~~~~~~-------~~~---~~s~~~~Fl~~~~~~~-pi~~~V~~lr~G--- 214 (430)
.|.+..+ ..|...++.+=-.+||++.+.....+. .+. ...-.+.|-++..|+. .++|+++..+-+
T Consensus 41 ff~gHFp-~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~ 119 (150)
T cd01287 41 FFPCHFH-GDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDG 119 (150)
T ss_pred eEcCCCC-CCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccC
Confidence 4444443 234455666667888887776432221 111 1223678989998876 688888887765
Q ss_pred -CCeeEEEEEEEECCeeEEEEE
Q 040957 215 -NSFATRRVDAIQKGNIIFTLL 235 (430)
Q Consensus 215 -r~~s~~~V~~~Q~g~~~~~~~ 235 (430)
+++....+.++-+|++++.+.
T Consensus 120 ~~~~~~~~~~~~vdg~~v~~a~ 141 (150)
T cd01287 120 PRPYIIADASLWVDGLRIYEAK 141 (150)
T ss_pred CccEEEEEEEEEECCEEEEEEE
Confidence 599999999999999998875
No 102
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=85.54 E-value=4 Score=34.94 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=48.0
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecce----eCCeeeEEEEEEccCCCEEEEEeccceeccCCCC
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVA----SKARGFVSGEMFNTKGELLVSLTQEALLRSPKPK 423 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~----~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~~~~ 423 (430)
-.+-.+.|++|+.+++=+..+.+.... ..|....+..+.|++|++|+++.-..+++.++.+
T Consensus 86 ~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~~~~~~~ 150 (166)
T PRK13691 86 QVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMGQQGDNS 150 (166)
T ss_pred eeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEEecCCCc
Confidence 345678899999998888887755433 3367778888999999999999999999986643
No 103
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=85.15 E-value=9.4 Score=31.46 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=54.0
Q ss_pred eeehhHHHHHHHHHHhc--c-CC--CC--Ccceee-eeeeccCcCC-CCCeEEEEEEeeeC-CCeeEEEEEEEECCeeEE
Q 040957 163 KVFGGQLVGQALAAASK--T-VD--CL--KIVHSL-HCYFLLVGDL-NIPIIYQVHRVRDG-NSFATRRVDAIQKGNIIF 232 (430)
Q Consensus 163 ~~~GG~~~a~al~Aa~~--~-~~--~~--~~~~s~-~~~Fl~~~~~-~~pi~~~V~~lr~G-r~~s~~~V~~~Q~g~~~~ 232 (430)
++.+=-.+||+..+... . .. +. ..+.++ .+.|..+..+ +..+.++++.++.. +++.....+++.+|++++
T Consensus 49 ~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~v~~~~va 128 (138)
T cd01289 49 AWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIEDQGGVLA 128 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEEECCEEEE
Confidence 44555578887655431 1 11 11 124444 6778887655 77899999988887 499999999999999999
Q ss_pred EEEEec
Q 040957 233 TLLASF 238 (430)
Q Consensus 233 ~~~~sf 238 (430)
.+...+
T Consensus 129 ~a~l~~ 134 (138)
T cd01289 129 SGRLNV 134 (138)
T ss_pred EEEEEE
Confidence 988765
No 104
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=84.90 E-value=6 Score=32.59 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=55.1
Q ss_pred ceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccC
Q 040957 359 TASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSP 420 (430)
Q Consensus 359 ~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~ 420 (430)
...+.++.++.|++|+..++.+.++++....++-+....-+|++++ +++|++.+..+....
T Consensus 55 ~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~s~~~~~~i~~~~-~l~a~~~~~~V~v~~ 115 (137)
T COG0824 55 IAFVVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNED-ELLATGETTLVCVDL 115 (137)
T ss_pred cEEEEEEEEeEECCCccCCCEEEEEEEEEeecCeEEEEEEEEEeCC-EEEEEEEEEEEEEEC
Confidence 4577899999999999999999999999999999999999999999 899999988777653
No 105
>PLN02864 enoyl-CoA hydratase
Probab=84.60 E-value=9.2 Score=36.40 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=54.9
Q ss_pred CceeehhHHHHHHHHHHhccCCCC--CcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEEEec
Q 040957 161 FGKVFGGQLVGQALAAASKTVDCL--KIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASF 238 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~~--~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~~sf 238 (430)
..-+||-+.+|.+..+...+..++ -.+.++.+.|.+|.-++..+..+++ ++|+ .....+.+.|+|++++.+.+..
T Consensus 227 ~~IaHGm~t~g~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~--~~~~-~v~~~~~~~~~g~~vl~G~a~~ 303 (310)
T PLN02864 227 RPILHGLCTLGFAVRAVIKCFCNGDPTAVKTISGRFLLHVYPGETLVTEMW--LEGL-RVIYQTKVKERNKAVLSGYVDL 303 (310)
T ss_pred CceeccHHHHHHHHHHHHhhhcCCCCceEEEEEEEEcCCccCCCEEEEEEE--eCCC-EEEEEEEEecCCeEEEEEEEEE
Confidence 347899999898887776654222 2467899999999999776655554 3444 3556666789999888888877
Q ss_pred c
Q 040957 239 Q 239 (430)
Q Consensus 239 ~ 239 (430)
.
T Consensus 304 ~ 304 (310)
T PLN02864 304 R 304 (310)
T ss_pred e
Confidence 5
No 106
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=84.56 E-value=8.8 Score=32.53 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=37.2
Q ss_pred eeeeeccCcCCCCCeEEEEEEe--ee--CCCeeEEEEEEE-ECCeeEEEEEEec
Q 040957 190 LHCYFLLVGDLNIPIIYQVHRV--RD--GNSFATRRVDAI-QKGNIIFTLLASF 238 (430)
Q Consensus 190 ~~~~Fl~~~~~~~pi~~~V~~l--r~--Gr~~s~~~V~~~-Q~g~~~~~~~~sf 238 (430)
....|++|..++-.+.++++.+ |. ++.+.+.+++++ |+|++++.+...+
T Consensus 89 q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~~~~~ 142 (159)
T PRK13692 89 QVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQETYTTL 142 (159)
T ss_pred eEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEEEEEE
Confidence 4568999999988887777775 44 556777777776 8899887776654
No 107
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=84.32 E-value=9.7 Score=31.47 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=48.4
Q ss_pred CCceeehhHHHHHHHHHHhccCCCCCccee---eeeeeccCcCCCCCeEEEEEEeee------CCCeeEEEEEE-EECCe
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDCLKIVHS---LHCYFLLVGDLNIPIIYQVHRVRD------GNSFATRRVDA-IQKGN 229 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~~~~~~s---~~~~Fl~~~~~~~pi~~~V~~lr~------Gr~~s~~~V~~-~Q~g~ 229 (430)
+..-++|.++++++........+ +..+.+ -++.|++|..++..+..+++.+.- ++.+.+..+.+ -|+|+
T Consensus 49 g~~ia~G~l~~s~~~~l~~~~~~-~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~ 127 (142)
T cd03452 49 GKRVAHGYFVLSAAAGLFVDPAP-GPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGE 127 (142)
T ss_pred CCeeecHHHHHHHHhhhCccCCc-ccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCC
Confidence 34578888888877654322222 222222 388999999998777665554432 12355555555 47899
Q ss_pred eEEEEEEec
Q 040957 230 IIFTLLASF 238 (430)
Q Consensus 230 ~~~~~~~sf 238 (430)
+++++....
T Consensus 128 ~V~~~~~~~ 136 (142)
T cd03452 128 LVASYDILT 136 (142)
T ss_pred EEEEEEehH
Confidence 888887654
No 108
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=83.45 E-value=3.2 Score=33.31 Aligned_cols=53 Identities=9% Similarity=-0.142 Sum_probs=40.3
Q ss_pred CCceeehhHHHHHHHHHHhccCCCC--CcceeeeeeeccCcCCCCCeEEEEEEee
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDCL--KIVHSLHCYFLLVGDLNIPIIYQVHRVR 212 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~~--~~~~s~~~~Fl~~~~~~~pi~~~V~~lr 212 (430)
....++|-+++|++........++. ..+.++.+.|++|..++..+.+.++.+.
T Consensus 49 ~~~ivhG~~~~a~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~ 103 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLLGDWLGPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTE 103 (122)
T ss_dssp SSSB-BHHHHHHHHHHHHHHHHSTTECEEEEEEEEEESS--BTTEEEEEEEEEEE
T ss_pred CCEEEccHHHHHHHHHHHHHhccCccceEEEEEEEEEeccccCCCEEEEEEEEEE
Confidence 3458999999999988888887653 4578899999999999888877777664
No 109
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=83.13 E-value=7.2 Score=32.11 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=48.8
Q ss_pred CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCeeEEEEEEec
Q 040957 184 LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGNIIFTLLASF 238 (430)
Q Consensus 184 ~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~~~~~~~~sf 238 (430)
.+.+..+|+.|++|...+..+++++...+-|+.--+..-+++.++++++++....
T Consensus 56 ~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~s~~~~~~i~~~~~l~a~~~~~~ 110 (137)
T COG0824 56 AFVVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNEDELLATGETTL 110 (137)
T ss_pred EEEEEEEEeEECCCccCCCEEEEEEEEEeecCeEEEEEEEEEeCCEEEEEEEEEE
Confidence 3678899999999999999999999999999988889999999998888877654
No 110
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=81.71 E-value=5.2 Score=32.73 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=49.3
Q ss_pred cCccccceeecccCCCCC---CCceeehhHHHHHHHH----HHhccCCCCCc--ceeeeeeeccCcCCCCCeEEEEEEe-
Q 040957 142 LEPVEVNIFQGITLPDAP---KFGKVFGGQLVGQALA----AASKTVDCLKI--VHSLHCYFLLVGDLNIPIIYQVHRV- 211 (430)
Q Consensus 142 l~~~~~~~f~~~~~~~~~---~~~~~~GG~~~a~al~----Aa~~~~~~~~~--~~s~~~~Fl~~~~~~~pi~~~V~~l- 211 (430)
++.++++......+..+. ..+.+|||.+.++|=. .+...++++.. +.++++.|++|+..+.-+++++..-
T Consensus 23 i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~g~v~a~~~~~~e~ 102 (132)
T PF14539_consen 23 IEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPARGDVTATAELTEEQ 102 (132)
T ss_dssp EEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---S-EEEEEE-TCCH
T ss_pred EEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccCCcEEEEEEcCHHH
Confidence 445566666666665443 2458999998877622 22344554433 5789999999987654455554442
Q ss_pred eeCCCeeEEEEEEEEC-CeeEEEEEE
Q 040957 212 RDGNSFATRRVDAIQK-GNIIFTLLA 236 (430)
Q Consensus 212 r~Gr~~s~~~V~~~Q~-g~~~~~~~~ 236 (430)
...|..-+..|.++-. |.+++.+..
T Consensus 103 ~~~~~~~~~~v~i~D~~G~~Va~~~~ 128 (132)
T PF14539_consen 103 IGERGELTVPVEITDADGEVVAEATI 128 (132)
T ss_dssp CCHEEEEEEEEEEEETTC-EEEEEEE
T ss_pred hCCCcEEEEEEEEEECCCCEEEEEEE
Confidence 1225555666666654 556665554
No 111
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=81.13 E-value=21 Score=30.75 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=58.2
Q ss_pred eeecccCCCCCCCceeehhHHHHHHHHHHhccCC---CCCcceeeeeeeccCcCCCCC-eEEEEEEee---eCCCeeEEE
Q 040957 149 IFQGITLPDAPKFGKVFGGQLVGQALAAASKTVD---CLKIVHSLHCYFLLVGDLNIP-IIYQVHRVR---DGNSFATRR 221 (430)
Q Consensus 149 ~f~~~~~~~~~~~~~~~GG~~~a~al~Aa~~~~~---~~~~~~s~~~~Fl~~~~~~~p-i~~~V~~lr---~Gr~~s~~~ 221 (430)
.|.+..+. .|...++.|=-.+||++.+...... .++.+..-.+.|-++..|+.. ++|+|+..+ +.+++....
T Consensus 67 ff~gHFp~-~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~ 145 (172)
T PRK05174 67 FFGCHFIG-DPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIAD 145 (172)
T ss_pred cccCCCCC-CCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEE
Confidence 34444432 3445567777788888766543211 122233347788888888655 788888777 467899999
Q ss_pred EEEEECCeeEEEEE
Q 040957 222 VDAIQKGNIIFTLL 235 (430)
Q Consensus 222 V~~~Q~g~~~~~~~ 235 (430)
++++-+|++++.+.
T Consensus 146 ~~i~v~g~~va~a~ 159 (172)
T PRK05174 146 GRVLVDGEEIYTAK 159 (172)
T ss_pred EEEEECCEEEEEEE
Confidence 99999999998883
No 112
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=78.56 E-value=14 Score=37.73 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=53.5
Q ss_pred eeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccC
Q 040957 361 SLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSP 420 (430)
Q Consensus 361 ~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~ 420 (430)
...+++.|.|++++..++.+.++++....++-+....-++++.+|+++|++.+..+....
T Consensus 396 ~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~s~~~~~~i~~~~g~l~A~g~~~~v~vD~ 455 (495)
T PRK07531 396 YYTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTLYDAGGELIATAEHMLLHVDL 455 (495)
T ss_pred EEEEEEEEEEcccCCCCCEEEEEEEEEecCCcEEEEEEEEECCCCcEEEEEEEEEEEEEC
Confidence 356899999999999999999999999999999999999999999999999998776653
No 113
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=78.25 E-value=9.7 Score=26.71 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=38.9
Q ss_pred EEecCCCEEEeCCCcCC-eEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEEe
Q 040957 34 KRYGKGEYVVRDGDIGE-GIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLVL 110 (430)
Q Consensus 34 ~~~~~ge~i~~~g~~~~-~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i 110 (430)
..+++|+.+-..-.... .+++|++|.+.+. . +++ ...+++||.+=-. .+.++...-..-+++.++.|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~--~---~~~----~~~l~~Gd~~~i~-~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT--V---DGE----RVELKPGDAIYIP-PGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE--E---TTE----EEEEETTEEEEEE-TTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE--E---ccE----EeEccCCEEEEEC-CCCeEEEEECCCCCEEEEEE
Confidence 46778886655555555 8999999999998 2 222 3567888754321 22333333333334555443
No 114
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=76.64 E-value=10 Score=31.38 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=42.8
Q ss_pred eeeeccCCCCCCCeEEeEEeeccee------CCeeeEEEEEEccCCCEEEEEeccceecc
Q 040957 366 HSMWFHRSFRADDWLLFVIVSPVAS------KARGFVSGEMFNTKGELLVSLTQEALLRS 419 (430)
Q Consensus 366 ~si~f~~~~~~~~W~l~~~~~~~~~------~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~ 419 (430)
-.+.|++|+.+++=+..+.+..... .|.......+.|++|+.|+++....|++.
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~ 140 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYDILTLVAK 140 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEEehHeeEe
Confidence 3889999999888887777766552 14566788888999999999998888764
No 115
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=76.26 E-value=33 Score=29.40 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=55.9
Q ss_pred eeecccCCCCCCCceeehhHHHHHHHHHHhccCC-CC--CcceeeeeeeccCcCCCCCe-EEEEEEee---eCCCeeEEE
Q 040957 149 IFQGITLPDAPKFGKVFGGQLVGQALAAASKTVD-CL--KIVHSLHCYFLLVGDLNIPI-IYQVHRVR---DGNSFATRR 221 (430)
Q Consensus 149 ~f~~~~~~~~~~~~~~~GG~~~a~al~Aa~~~~~-~~--~~~~s~~~~Fl~~~~~~~pi-~~~V~~lr---~Gr~~s~~~ 221 (430)
.|.+..+ ..|...++.|=-.+||++.+...... +. +.+..-.+.|-++..|+..+ .|+|+..+ +.+++....
T Consensus 64 ff~gHFp-~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~~~~~~ 142 (169)
T TIGR01749 64 FFGCHFI-GDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLVMGIAD 142 (169)
T ss_pred ceeCCCC-CCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEEEeecCCcEEEEE
Confidence 3444433 23445567777788998777643222 11 22222367788888886554 78888666 456789999
Q ss_pred EEEEECCeeEEEEE
Q 040957 222 VDAIQKGNIIFTLL 235 (430)
Q Consensus 222 V~~~Q~g~~~~~~~ 235 (430)
++++-+|++++.+.
T Consensus 143 ~~i~v~g~~va~a~ 156 (169)
T TIGR01749 143 GEVLVDGRLIYTAS 156 (169)
T ss_pred EEEEECCEEEEEEE
Confidence 99999999988753
No 116
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=74.82 E-value=13 Score=29.04 Aligned_cols=45 Identities=4% Similarity=-0.070 Sum_probs=39.8
Q ss_pred CcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEECCe
Q 040957 185 KIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQKGN 229 (430)
Q Consensus 185 ~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~g~ 229 (430)
..+..+++.|.++...+..+.+++...+-|++..++..++.+++.
T Consensus 49 ~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s~~~~~~i~~~~~ 93 (117)
T TIGR00051 49 FVVVNINIEYKKPARLDDVLEIRTQIEELNGFSFVFSQEIFNEDE 93 (117)
T ss_pred EEEEEEEEEECCcccCCCEEEEEEEEEecCcEEEEEEEEEEeCCC
Confidence 467789999999999989999999999999999999999887643
No 117
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=74.45 E-value=15 Score=28.95 Aligned_cols=53 Identities=9% Similarity=-0.102 Sum_probs=42.2
Q ss_pred CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE--CCee--EEEEEE
Q 040957 184 LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ--KGNI--IFTLLA 236 (430)
Q Consensus 184 ~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q--~g~~--~~~~~~ 236 (430)
++.+...++.|+++...+..+++++...+-|++.....-++++ +|+. ++++..
T Consensus 43 ~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~~~i~~~~~g~~~~~a~~~~ 99 (121)
T PF13279_consen 43 GFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFEQEIFRPADGKGELAATGRT 99 (121)
T ss_dssp EEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEEEEEEECSTTEEEEEEEEEE
T ss_pred eEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEEEEEEEcCCCceEEEEEEEE
Confidence 4567889999999999988999999999999999999999999 7776 555543
No 118
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=74.33 E-value=13 Score=30.42 Aligned_cols=49 Identities=14% Similarity=0.001 Sum_probs=37.1
Q ss_pred eeeccCCCCCCCeEEeEEeeccee------CCeeeEEEEEEccCCCEEEEEeccc
Q 040957 367 SMWFHRSFRADDWLLFVIVSPVAS------KARGFVSGEMFNTKGELLVSLTQEA 415 (430)
Q Consensus 367 si~f~~~~~~~~W~l~~~~~~~~~------~gr~~~~~~i~~~~G~lvA~~~Q~~ 415 (430)
++.|++|+.+++=+.++.+..... .|....+..+.|++|++|+++.=..
T Consensus 84 ~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~ 138 (140)
T cd03446 84 NLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGEMSL 138 (140)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEEEee
Confidence 788999999999888888776543 2445557777899999998876443
No 119
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=74.18 E-value=40 Score=27.50 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=39.5
Q ss_pred eecceeeeccCCCCCCC-eEEeEEeecc---eeCCeeeEEEEEEccCCCEEEEE
Q 040957 362 LSLDHSMWFHRSFRADD-WLLFVIVSPV---ASKARGFVSGEMFNTKGELLVSL 411 (430)
Q Consensus 362 ~sld~si~f~~~~~~~~-W~l~~~~~~~---~~~gr~~~~~~i~~~~G~lvA~~ 411 (430)
..--..+.|+.++.+++ .+.++.+... ...+.+..++++| -||++||++
T Consensus 85 l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~-vdg~~v~~~ 137 (138)
T PF07977_consen 85 LAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAY-VDGELVAEA 137 (138)
T ss_dssp EEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEE-ETTEEEEEE
T ss_pred eccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEE-ECCEEEEEE
Confidence 34456788988888888 9999999999 8999999999999 788899986
No 120
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=73.63 E-value=14 Score=30.24 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=39.2
Q ss_pred eeeccCCCCCCCeEEeEEeeccee-------CCeeeEEEEEEccCCCEEEEEecccee
Q 040957 367 SMWFHRSFRADDWLLFVIVSPVAS-------KARGFVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 367 si~f~~~~~~~~W~l~~~~~~~~~-------~gr~~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
.+.|++|+.+++=+..+.+..... .|....+..+.|++|++|+++.=..++
T Consensus 82 ~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~~~ 139 (140)
T cd03454 82 ELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVVLTFEATVLV 139 (140)
T ss_pred eeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEEEEEEehhee
Confidence 789999998888887777765443 345677788889999999988765554
No 121
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=72.67 E-value=44 Score=26.22 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=51.1
Q ss_pred ceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEc-cCCCE--EEEEeccceeccCC
Q 040957 359 TASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFN-TKGEL--LVSLTQEALLRSPK 421 (430)
Q Consensus 359 ~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~-~~G~l--vA~~~Q~~l~r~~~ 421 (430)
......+.++.|++++..++=+.++.+....++.+.....++|+ .+|+. +|++.+..+....+
T Consensus 42 ~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~ 107 (121)
T PF13279_consen 42 IGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFEQEIFRPADGKGELAATGRTVMVFVDYK 107 (121)
T ss_dssp EEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEEEEEEECSTTEEEEEEEEEEEEEEEETT
T ss_pred ceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeCC
Confidence 35678888999999988888899999999999999999999998 36755 99999988877654
No 122
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=72.01 E-value=19 Score=29.00 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=43.1
Q ss_pred CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE-CCeeEEEEEEec
Q 040957 184 LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ-KGNIIFTLLASF 238 (430)
Q Consensus 184 ~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q-~g~~~~~~~~sf 238 (430)
+..+...++.|.+|...+..+++++...+-|++-.+...+++. +|++++.+...+
T Consensus 53 ~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~s~~~~~~i~~~~g~~~a~~~~~~ 108 (130)
T PRK10800 53 AFVVRKMTVEYYAPARLDDMLEVQSEITSMRGTSLTFTQRIVNAEGTLLNEAEVLI 108 (130)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEeeCcEEEEEEEEEEcCCCeEEEEEEEEE
Confidence 4557789999999999999999999999998874445555653 688887776554
No 123
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=72.00 E-value=18 Score=29.55 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhhhhhhhcccCccCCCcceeeecceeeeccCCCCCCCeEEeEEeecce---eCCeeeEEEEEEccCCC
Q 040957 330 ALHRCVVAFASDLIFSSVSLNPHRRKGFRTASLSLDHSMWFHRSFRADDWLLFVIVSPVA---SKARGFVSGEMFNTKGE 406 (430)
Q Consensus 330 ~~~~~~la~~sD~~~~~~~~~~~~~~~~~~~~~sld~si~f~~~~~~~~W~l~~~~~~~~---~~gr~~~~~~i~~~~G~ 406 (430)
..|..+++-++|......++...+ .......-+.+|.|++| +.+-+..+++.... ..+.-.....++|++|+
T Consensus 47 t~h~gAl~~laE~~~g~~~~~~l~---~~~~~~~k~~~i~f~kp--a~g~v~a~~~~~~e~~~~~~~~~~~v~i~D~~G~ 121 (132)
T PF14539_consen 47 TIHAGALFTLAEPAYGLLLMSNLG---DKYRVWDKSAEIDFLKP--ARGDVTATAELTEEQIGERGELTVPVEITDADGE 121 (132)
T ss_dssp SB-HHHHHHHHHCHHHHHHHHHS----TTEEEEEEEEEEEE-S-----S-EEEEEE-TCCHCCHEEEEEEEEEEEETTC-
T ss_pred chHHHHHHHHHHHHHHHHHHHhCC---CcEEEEEEeeEEEEEec--cCCcEEEEEEcCHHHhCCCcEEEEEEEEEECCCC
Confidence 358888999999754333332221 12334455667888874 33444444433332 24567778999999999
Q ss_pred EEEEEecc
Q 040957 407 LLVSLTQE 414 (430)
Q Consensus 407 lvA~~~Q~ 414 (430)
.||.+.-+
T Consensus 122 ~Va~~~~t 129 (132)
T PF14539_consen 122 VVAEATIT 129 (132)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998754
No 124
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=71.78 E-value=20 Score=28.93 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=42.8
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccC-CCEEEEEec
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTK-GELLVSLTQ 413 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~-G~lvA~~~Q 413 (430)
.+..++.|.+|+.+++=+..+.+......|....+.++.+++ |+.|..+..
T Consensus 70 ~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~~ 121 (126)
T cd03447 70 VRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGEA 121 (126)
T ss_pred EEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEEE
Confidence 455688999999889988888888777888999999999998 998877653
No 125
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=71.53 E-value=3.5 Score=32.70 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=19.6
Q ss_pred eeEEEEEEccCCCEEEEEeccc
Q 040957 394 GFVSGEMFNTKGELLVSLTQEA 415 (430)
Q Consensus 394 ~~~~~~i~~~~G~lvA~~~Q~~ 415 (430)
.-.+++|||+||.|||.+.+..
T Consensus 17 t~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 17 TRTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCceEEEECCCCCEEeeccccc
Confidence 3578999999999999999877
No 126
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=71.37 E-value=21 Score=29.59 Aligned_cols=79 Identities=10% Similarity=0.007 Sum_probs=46.9
Q ss_pred ceEEEecCCCEEEeCCCc-CCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEE
Q 040957 31 VIVKRYGKGEYVVRDGDI-GEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLV 109 (430)
Q Consensus 31 ~~~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~ 109 (430)
+....+++|..+-..-.. ...+++|++|...+. ....++++ .....+.+||++--. .+..+.......+++.++.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~--~~~~~~~~-~~~~~l~~GD~~~ip-~g~~H~~~n~~~~~~~~l~ 107 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVG--VVDPNGNK-VYDARLREGDVFVVP-QGHPHFQVNSGDENLEFVA 107 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEE--EEeCCCCe-EEEEEecCCCEEEEC-CCCEEEEEcCCCCCEEEEE
Confidence 335577888876544433 568999999999998 43333333 566788999866553 1122222222234566666
Q ss_pred eccc
Q 040957 110 LPHE 113 (430)
Q Consensus 110 i~~~ 113 (430)
++..
T Consensus 108 ~~~~ 111 (146)
T smart00835 108 FNTN 111 (146)
T ss_pred EecC
Confidence 5443
No 127
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=71.29 E-value=26 Score=27.23 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=46.3
Q ss_pred eeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecc
Q 040957 361 SLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQE 414 (430)
Q Consensus 361 ~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~ 414 (430)
.+.+.+.+.|++++..++-+.+++.....++-+....-++++.+|.+++.....
T Consensus 49 ~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s~~~~~~i~~~~~~~~~~~~~~ 102 (117)
T TIGR00051 49 FVVVNINIEYKKPARLDDVLEIRTQIEELNGFSFVFSQEIFNEDEALLKAATVI 102 (117)
T ss_pred EEEEEEEEEECCcccCCCEEEEEEEEEecCcEEEEEEEEEEeCCCcEEEeeEEE
Confidence 457788999999999999999999999998888888889999988877666553
No 128
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=70.38 E-value=18 Score=29.95 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=44.0
Q ss_pred eeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceec
Q 040957 366 HSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLR 418 (430)
Q Consensus 366 ~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r 418 (430)
..+.|++|+.+++=+.++.+......|....+++++ .+|++||++.=..+++
T Consensus 94 ~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~-~~g~~v~~~~~~~~~~ 145 (147)
T PRK00006 94 DKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVAT-VDGKLVAEAELMFAIR 145 (147)
T ss_pred eEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEE-ECCEEEEEEEEEEEEE
Confidence 478999998888889999998888889999999998 6999999987665543
No 129
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=68.57 E-value=22 Score=28.62 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=36.7
Q ss_pred ceeeeccCCCCCCCeEEeEEeecce--e--CCeeeEEEEEEccCCCEEEEEe
Q 040957 365 DHSMWFHRSFRADDWLLFVIVSPVA--S--KARGFVSGEMFNTKGELLVSLT 412 (430)
Q Consensus 365 d~si~f~~~~~~~~W~l~~~~~~~~--~--~gr~~~~~~i~~~~G~lvA~~~ 412 (430)
+..+.|++|+.+++=+..+.+.... . .|....+..+.|++|++|.++.
T Consensus 72 ~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~g~ 123 (127)
T cd03453 72 SFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKKVLGR 123 (127)
T ss_pred EEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEEEE
Confidence 4468999999888888887766433 2 2566778888999999988865
No 130
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=68.53 E-value=14 Score=35.47 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=38.9
Q ss_pred CCceeehhHHHHHHHHHHhccC----CCCCcceee-eeeeccCcCCCCCeEEEEEEeeeCCC
Q 040957 160 KFGKVFGGQLVGQALAAASKTV----DCLKIVHSL-HCYFLLVGDLNIPIIYQVHRVRDGNS 216 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~----~~~~~~~s~-~~~Fl~~~~~~~pi~~~V~~lr~Gr~ 216 (430)
..+.+|||+++..|+.-|..+. .......|+ ++.|.+|.+.+.-+.++--....-.+
T Consensus 213 ~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~~k 274 (357)
T KOG2763|consen 213 IHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTDNK 274 (357)
T ss_pred ccCceehHHHHHHHHHHHHHHHHHHcCCCceEEEechhhccCcceeeeEEEEeeEEEEecCC
Confidence 3468999999999987776544 333445665 67788888876666666655554444
No 131
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=67.92 E-value=9.8 Score=27.51 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=28.1
Q ss_pred EecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeecc
Q 040957 35 RYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGH 88 (430)
Q Consensus 35 ~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe 88 (430)
+..+|..-..-. .+.+.+|++|.+.+. .. +|. ...+.+||.|--
T Consensus 13 ~~~pg~~~~~~~--~~E~~~vleG~v~it--~~--~G~----~~~~~aGD~~~~ 56 (74)
T PF05899_consen 13 ECTPGKFPWPYP--EDEFFYVLEGEVTIT--DE--DGE----TVTFKAGDAFFL 56 (74)
T ss_dssp EEECEEEEEEES--SEEEEEEEEEEEEEE--ET--TTE----EEEEETTEEEEE
T ss_pred EECCceeEeeCC--CCEEEEEEEeEEEEE--EC--CCC----EEEEcCCcEEEE
Confidence 345555433322 278889999999999 22 333 267888887644
No 132
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=67.63 E-value=16 Score=29.31 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=41.5
Q ss_pred eeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecc
Q 040957 366 HSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQE 414 (430)
Q Consensus 366 ~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~ 414 (430)
.++.|+.|+.+++=+.++.+.....++....+++++ .+|+++|++.-.
T Consensus 80 ~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~-~~g~~v~~~~~~ 127 (131)
T cd01288 80 DKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAY-VDGKLVAEAELM 127 (131)
T ss_pred cccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEE-ECCEEEEEEEEE
Confidence 577899988888889999999988999999999996 789999988643
No 133
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=65.11 E-value=27 Score=29.49 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=47.1
Q ss_pred ceeeeccCCCCCCCeEEeEEeeccee----CCeeeEEEEEEccCCCEEEEEeccceeccC
Q 040957 365 DHSMWFHRSFRADDWLLFVIVSPVAS----KARGFVSGEMFNTKGELLVSLTQEALLRSP 420 (430)
Q Consensus 365 d~si~f~~~~~~~~W~l~~~~~~~~~----~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~ 420 (430)
-.++.|++|+.+++=+..+.+..... .|+...+.+..+++|++++.+.=+.++..+
T Consensus 98 ~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~~g~~v~~~~~~~~~~~~ 157 (159)
T COG2030 98 GDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQEGELVLTLEATVLVLRR 157 (159)
T ss_pred ccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEccCCcEEEEEEEeEeEeec
Confidence 35789999999999888888887554 399999999999999999999888877644
No 134
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=65.09 E-value=27 Score=27.81 Aligned_cols=47 Identities=17% Similarity=0.025 Sum_probs=37.4
Q ss_pred eeeeccCCCCCCCeEEeEEeecceeCC-eeeEEEEEEccCCCEEEEEe
Q 040957 366 HSMWFHRSFRADDWLLFVIVSPVASKA-RGFVSGEMFNTKGELLVSLT 412 (430)
Q Consensus 366 ~si~f~~~~~~~~W~l~~~~~~~~~~g-r~~~~~~i~~~~G~lvA~~~ 412 (430)
.++.|++|+.+++=+..+.+......+ +...+.++.|++|++|.++.
T Consensus 72 ~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq~G~~v~~g~ 119 (123)
T cd03455 72 FAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNSEGDHVMAGT 119 (123)
T ss_pred EEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcCCCCEEEeEE
Confidence 478999999889988888876655444 66778888899999988775
No 135
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=64.86 E-value=26 Score=26.59 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=35.0
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEE
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSL 411 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~ 411 (430)
....+.+|.+|.+.++.+.++.+..+.+.......++++ ++|+++.++
T Consensus 41 ~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~-Q~g~~~~~a 88 (94)
T cd03445 41 PHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV-QNGKVIFTA 88 (94)
T ss_pred eEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEE-ECCEEEEEE
Confidence 445678899988888988888887766666666677776 567765544
No 136
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=64.71 E-value=29 Score=30.21 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=48.3
Q ss_pred eeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecccee
Q 040957 361 SLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 361 ~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
..+...++.|.+|+.+++=+..+++......+.....+.++ .+|++|+.+....+.
T Consensus 126 ~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~-v~g~~V~ege~~~~~ 181 (185)
T PRK04424 126 ALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSY-VGDELVFRGKFIMYR 181 (185)
T ss_pred EEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEE-ECCEEEEEEEEEEEE
Confidence 44555689999999999999999999988888889999999 789999999887654
No 137
>PLN02864 enoyl-CoA hydratase
Probab=62.90 E-value=25 Score=33.46 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=46.2
Q ss_pred eeeecceeeeccCCCCCCCeEEeEEeeccee-CCe---eeEEEEEEc-cCCCEEEEEeccceeccC
Q 040957 360 ASLSLDHSMWFHRSFRADDWLLFVIVSPVAS-KAR---GFVSGEMFN-TKGELLVSLTQEALLRSP 420 (430)
Q Consensus 360 ~~~sld~si~f~~~~~~~~W~l~~~~~~~~~-~gr---~~~~~~i~~-~~G~lvA~~~Q~~l~r~~ 420 (430)
...=.++.|.+|+|++.++=+..+.+..... .|+ ...+..+.| ++|++|++.....++|..
T Consensus 93 ~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 93 LLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred heeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 3556778999999998888777777766553 333 356777778 599999999999999964
No 138
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=61.63 E-value=61 Score=27.36 Aligned_cols=78 Identities=13% Similarity=0.002 Sum_probs=54.9
Q ss_pred CCceeehhHHHHHHHHHHhccCCCC---CcceeeeeeeccCcCCCCCeEEEEEEeee-----CCCeeEEEEEEEECCeeE
Q 040957 160 KFGKVFGGQLVGQALAAASKTVDCL---KIVHSLHCYFLLVGDLNIPIIYQVHRVRD-----GNSFATRRVDAIQKGNII 231 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~~~---~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~-----Gr~~s~~~V~~~Q~g~~~ 231 (430)
++.-+||-+.+|++........+.. ..+---.+.|++|+.++..+...++.+.- ......+....-|.|..+
T Consensus 66 g~~iahG~~t~a~~~~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~~g~~v 145 (159)
T COG2030 66 GGPIAHGMLTLALAMGLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQEGELV 145 (159)
T ss_pred CCEehhHHHHHHHHHHHHHHhccCcceeeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEccCCcEE
Confidence 4457899999998887766655422 23344578899999998888888888742 134666777778888877
Q ss_pred EEEEEe
Q 040957 232 FTLLAS 237 (430)
Q Consensus 232 ~~~~~s 237 (430)
..+...
T Consensus 146 ~~~~~~ 151 (159)
T COG2030 146 LTLEAT 151 (159)
T ss_pred EEEEEe
Confidence 666554
No 139
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=60.06 E-value=27 Score=28.59 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=40.7
Q ss_pred eeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecc
Q 040957 366 HSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQE 414 (430)
Q Consensus 366 ~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~ 414 (430)
.++.|+.++.+++=+.+..+......+....+++++ .+|+++|++.-.
T Consensus 90 ~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~~~-~~g~~va~~~~~ 137 (140)
T TIGR01750 90 DKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGEAT-VDGKVVAEAEIT 137 (140)
T ss_pred ceeEECCccCCCCEEEEEEEEEEccCCEEEEEEEEE-ECCEEEEEEEEE
Confidence 467898888888889999998888889999999996 799999988643
No 140
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=59.33 E-value=60 Score=26.21 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=39.3
Q ss_pred EEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEEe
Q 040957 34 KRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLVL 110 (430)
Q Consensus 34 ~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i 110 (430)
..+++|..+-..-.....+++|++|++.+. .. ++++ ...+.+||.+--. .+.++ .+++.+++.++++
T Consensus 40 ~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~--~i--~~g~---~~~L~aGD~i~~~-~~~~H--~~~N~e~~~~l~v 106 (125)
T PRK13290 40 TTIYAGTETHLHYKNHLEAVYCIEGEGEVE--DL--ATGE---VHPIRPGTMYALD-KHDRH--YLRAGEDMRLVCV 106 (125)
T ss_pred EEECCCCcccceeCCCEEEEEEEeCEEEEE--Ec--CCCE---EEEeCCCeEEEEC-CCCcE--EEEcCCCEEEEEE
Confidence 577888755332222246899999999987 21 2122 2678999876542 12222 3333377777766
No 141
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=58.27 E-value=28 Score=31.80 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=37.8
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEe
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLT 412 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~ 412 (430)
..+.+++|.++.+.+ .+.++++..+.+...+..+++++ ++|++++++.
T Consensus 36 ~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~-q~~~~~~~a~ 83 (255)
T PF13622_consen 36 PHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELS-QDGKVVATAT 83 (255)
T ss_dssp EEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEE-ETTEEEEEEE
T ss_pred eEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEE-ECCcCEEEEE
Confidence 456688999988888 99999999998888899999998 6776666554
No 142
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=57.98 E-value=37 Score=34.69 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=46.5
Q ss_pred CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE-CCeeEEEEEEec
Q 040957 184 LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ-KGNIIFTLLASF 238 (430)
Q Consensus 184 ~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q-~g~~~~~~~~sf 238 (430)
...+...++.|+++...+..+++++...+-|++..++.-+++. +|++++++...+
T Consensus 395 ~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~s~~~~~~i~~~~g~l~A~g~~~~ 450 (495)
T PRK07531 395 SYYTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTLYDAGGELIATAEHML 450 (495)
T ss_pred cEEEEEEEEEEcccCCCCCEEEEEEEEEecCCcEEEEEEEEECCCCcEEEEEEEEE
Confidence 3457789999999999999999999999999999999988887 678777766544
No 143
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=54.19 E-value=49 Score=26.33 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=39.7
Q ss_pred eeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEe
Q 040957 366 HSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLT 412 (430)
Q Consensus 366 ~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~ 412 (430)
..+.|+.++.+++=+.++.+.....+|....+++++. +|++++++.
T Consensus 81 ~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~~~~~-~g~~v~~~~ 126 (131)
T cd00493 81 RKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAYV-DGKLVAEAE 126 (131)
T ss_pred ceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEEEEEE-CCEEEEEEE
Confidence 5788998888888888888888888899999999997 799998876
No 144
>PF12571 DUF3751: Phage tail-collar fibre protein; InterPro: IPR022225 This entry is represented by Bacteriophage HP1, Orf31. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in bacteria and viruses, and is approximately 160 amino acids in length, some annotation suggests that it may be a tail fibre protein. There are two completely conserved residues (K and W) that may be functionally important.
Probab=53.93 E-value=37 Score=28.76 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=33.9
Q ss_pred CCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEec
Q 040957 375 RADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQ 413 (430)
Q Consensus 375 ~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q 413 (430)
....|+.+++.-+.--+|+..-+.-|||++|.|+|.+.=
T Consensus 69 ~n~n~v~~~~~i~~~~ggf~irEiGL~d~~G~Liai~~~ 107 (159)
T PF12571_consen 69 VNPNQVVYSAVIPSDVGGFTIREIGLFDEDGTLIAIANF 107 (159)
T ss_pred CCCCEEEEEEEECCccCCcEEEEEEEEccCCCEEEEEec
Confidence 346789999988877889999999999999999999773
No 145
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=53.93 E-value=16 Score=36.51 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=49.3
Q ss_pred eeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccCC
Q 040957 360 ASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSPK 421 (430)
Q Consensus 360 ~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~~ 421 (430)
...|.|-|+...+ +.-..=-+-...+.-++++|.-...=-|++||+++|.+++.|=|..++
T Consensus 285 lT~s~DgtlRiWd-v~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 285 LTCSYDGTLRIWD-VNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred EEecCCCcEEEEe-cCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence 3567887777665 333334566777888899999999999999999999999999999876
No 146
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=53.28 E-value=28 Score=20.79 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=24.6
Q ss_pred eCCeeeEEEEEEccCCCEEEEEeccceecc
Q 040957 390 SKARGFVSGEMFNTKGELLVSLTQEALLRS 419 (430)
Q Consensus 390 ~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~ 419 (430)
.+....+.+--|+++|.++|++.+++.++.
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~v 37 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRV 37 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEE
Confidence 344566778889999999999999998874
No 147
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=52.58 E-value=62 Score=25.45 Aligned_cols=49 Identities=20% Similarity=0.037 Sum_probs=39.2
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecceeC----CeeeEEEEEEccCCCEEEEE
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVASK----ARGFVSGEMFNTKGELLVSL 411 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~~~----gr~~~~~~i~~~~G~lvA~~ 411 (430)
.-...+.|++|+.+++=+....+...... |.........|++|+.+..+
T Consensus 70 ~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g 122 (127)
T cd03441 70 LGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVVLSG 122 (127)
T ss_pred eEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEEEEE
Confidence 34568889999999998888887776654 67888888889999988774
No 148
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=51.23 E-value=19 Score=30.01 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=30.7
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEe
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLT 412 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~ 412 (430)
++++=+.|.. +.++++.-----+ ...+.+--.+.||+.+|+|+|+..
T Consensus 18 ~vELG~kF~~--~~~G~vtgvrfYk-~~~ntgthtgsLWsa~G~lLAt~t 64 (149)
T PF13313_consen 18 AVELGVKFRS--SVAGQVTGVRFYK-GAGNTGTHTGSLWSADGTLLATAT 64 (149)
T ss_pred ceEEEeEEEe--cCCcEEEEEEEEe-CCCCCCceEEEEECCCCCEEEEEE
Confidence 5666677764 4445543332222 244566679999999999999875
No 149
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=51.19 E-value=60 Score=27.67 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=36.2
Q ss_pred eeeeccCcCCCCCeEEEEEEe----eeCCCeeEEEEEEE-ECCeeEEEEEEecccc
Q 040957 191 HCYFLLVGDLNIPIIYQVHRV----RDGNSFATRRVDAI-QKGNIIFTLLASFQKE 241 (430)
Q Consensus 191 ~~~Fl~~~~~~~pi~~~V~~l----r~Gr~~s~~~V~~~-Q~g~~~~~~~~sf~~~ 241 (430)
...|++|..++-.+..+++.+ +.++.+.+.+.++. |+|.+++++..++-..
T Consensus 90 ~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~~ 145 (166)
T PRK13691 90 RFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMGQ 145 (166)
T ss_pred EEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEEe
Confidence 556999999977777766444 33555677777775 8899988888766443
No 150
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=50.93 E-value=65 Score=32.65 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=45.4
Q ss_pred ecceeeeccCCCCCCCeEEeEEeecceeCCeee--EEEEEEccCCCEEEEEeccceeccCCC
Q 040957 363 SLDHSMWFHRSFRADDWLLFVIVSPVASKARGF--VSGEMFNTKGELLVSLTQEALLRSPKP 422 (430)
Q Consensus 363 sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~--~~~~i~~~~G~lvA~~~Q~~l~r~~~~ 422 (430)
....++.|++|+.+++=+..+.+......+++. .+.++.|++|++|+++.-+.+++.+..
T Consensus 85 ~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq~G~~V~~g~~~~l~~~~~~ 146 (466)
T PRK08190 85 YLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQDGEVVITGTAEVIAPTEKV 146 (466)
T ss_pred EEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeCCCCEEEEEEEEeecccccc
Confidence 355789999999989888888777655445444 555668999999999988888776543
No 151
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=49.67 E-value=72 Score=28.67 Aligned_cols=73 Identities=21% Similarity=0.128 Sum_probs=45.6
Q ss_pred ceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEec-cCCeeccC-----CCCCcceeeEEEecc
Q 040957 31 VIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLK-RYDYFGHG-----SPTIFRQGDVIALTE 104 (430)
Q Consensus 31 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~-~G~~fGe~-----~~~~~~~~~v~A~~~ 104 (430)
+....+.+|+.+-..-.....+.++++|.+.+. .. +. ++..++ .-++|-.. .-...+.+++.|.++
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs--~~----g~--~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVS--AH----GS--TFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEe--ec----cc--hHhhcccccccccCCCCCeEEecCCceEEEEeecc
Confidence 556788999998877777788889999999998 22 21 122222 22333322 223345678888888
Q ss_pred eEEEEec
Q 040957 105 LTCLVLP 111 (430)
Q Consensus 105 ~~~l~i~ 111 (430)
+++..-.
T Consensus 103 ~~vAvC~ 109 (270)
T COG3718 103 LEVAVCS 109 (270)
T ss_pred eEEEEEe
Confidence 7655443
No 152
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=48.46 E-value=73 Score=26.65 Aligned_cols=50 Identities=4% Similarity=0.071 Sum_probs=41.6
Q ss_pred eeeccCCCCCCC-eEEeEEeecceeC----CeeeEEEEEEccCCCEEEEEecccee
Q 040957 367 SMWFHRSFRADD-WLLFVIVSPVASK----ARGFVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 367 si~f~~~~~~~~-W~l~~~~~~~~~~----gr~~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
.+.|+.++.+.+ =+.++++...... +....++.+| -||+.|+++...++-
T Consensus 92 ~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~-vdg~~v~~a~~~~~~ 146 (150)
T cd01287 92 EWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLW-VDGLRIYEAKDIAVR 146 (150)
T ss_pred EEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEE-ECCEEEEEEEccEEE
Confidence 578988766665 8999999988874 8899999999 499999999887654
No 153
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=47.20 E-value=51 Score=26.58 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=37.6
Q ss_pred eEEEecCCCEEEeCCCc-CCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC
Q 040957 32 IVKRYGKGEYVVRDGDI-GEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG 89 (430)
Q Consensus 32 ~~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~ 89 (430)
....+++|..+-.--.+ .....+|++|.+++. .. |. ...+.+||++-..
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~--~~---g~----~~~l~~Gd~i~ip 95 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQ--LE---GE----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEE--ec---CC----ceEecCCCEEEEC
Confidence 35688999998877776 778999999999999 22 22 2578899987664
No 154
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=43.51 E-value=1.1e+02 Score=32.48 Aligned_cols=77 Identities=10% Similarity=-0.043 Sum_probs=48.1
Q ss_pred CceeehhHHHHHHHHHHhccCCCCCcce---eeeeeeccCcCCCCCeEEEEEEe--ee----CCCeeEEEEEEE-ECCee
Q 040957 161 FGKVFGGQLVGQALAAASKTVDCLKIVH---SLHCYFLLVGDLNIPIIYQVHRV--RD----GNSFATRRVDAI-QKGNI 230 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~~~~~~---s~~~~Fl~~~~~~~pi~~~V~~l--r~----Gr~~s~~~V~~~-Q~g~~ 230 (430)
..-++|-++++++........+ +-.+. .-.+.|++|..++..+..+++.+ +. ++...+.++.+. |+|++
T Consensus 573 ~~Ia~G~l~~sl~~~l~~~~~~-~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~ 651 (663)
T TIGR02278 573 KRVAHGYFVLSAAAGLFVDPAP-GPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEP 651 (663)
T ss_pred CceeCHHHHHHHHHHHhhccCc-cchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCE
Confidence 3467887777776544333322 22222 23788999999988787776665 32 222556666664 78998
Q ss_pred EEEEEEec
Q 040957 231 IFTLLASF 238 (430)
Q Consensus 231 ~~~~~~sf 238 (430)
++++...+
T Consensus 652 Vl~~~~~~ 659 (663)
T TIGR02278 652 VATYDVLT 659 (663)
T ss_pred EEEEEEHH
Confidence 88877654
No 155
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=42.80 E-value=74 Score=25.63 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=24.0
Q ss_pred ceEEEecCCCEE-EeCCCcCCeEEEEEeeEEEEE
Q 040957 31 VIVKRYGKGEYV-VRDGDIGEGIYFIWEGEAEVS 63 (430)
Q Consensus 31 ~~~~~~~~ge~i-~~~g~~~~~ly~I~~G~v~~~ 63 (430)
+....+++|+-+ .+--...+.+|+|++|...+.
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~ 71 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVT 71 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEE
Confidence 345566777775 333344689999999999999
No 156
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=42.46 E-value=71 Score=27.03 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=38.4
Q ss_pred CCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEEecccc
Q 040957 49 GEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLVLPHEH 114 (430)
Q Consensus 49 ~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i~~~~ 114 (430)
.+.+|++++|.+.+- .. ++++ .....+++||+|=-. .+. ..+-++..+|.++.|.+..
T Consensus 48 tdE~FyqleG~~~l~--v~--d~g~-~~~v~L~eGd~flvP-~gv--pHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 48 GEEFFYQLKGEMYLK--VT--EEGK-REDVPIREGDIFLLP-PHV--PHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CceEEEEEcceEEEE--EE--cCCc-EEEEEECCCCEEEeC-CCC--CcccccCCCcEEEEEEeCC
Confidence 689999999999986 33 2222 334678999877543 112 2233445788999998764
No 157
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=41.81 E-value=74 Score=29.38 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=45.7
Q ss_pred ceeeecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccCC
Q 040957 359 TASLSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSPK 421 (430)
Q Consensus 359 ~~~~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~~ 421 (430)
....|-|.||-|.+..+.++|-....--.+ -.-+-+..|+..|.-++++.+++-++..+
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~----~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGH----ENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCc----cceEEEEEecCCCceEEEecCCcceEeee
Confidence 467899999999986668999765443221 12677888999999999999999988755
No 158
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=40.43 E-value=1.7e+02 Score=22.53 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=36.3
Q ss_pred eeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEEC-CeeEEEE
Q 040957 191 HCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQK-GNIIFTL 234 (430)
Q Consensus 191 ~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q~-g~~~~~~ 234 (430)
+++|..+...+.=+.|+++..+.|...+..+.+++.. |+++++.
T Consensus 54 si~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~~G~LvAs~ 98 (104)
T cd03444 54 AIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTRDGELVASV 98 (104)
T ss_pred EEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECCCCCEEEEE
Confidence 6789998887788899999999888888889999865 7776654
No 159
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=39.97 E-value=97 Score=27.69 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=41.7
Q ss_pred ceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEe--cceEEE
Q 040957 31 VIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIAL--TELTCL 108 (430)
Q Consensus 31 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~--~~~~~l 108 (430)
....++++|..+-.....+..+.+|++|.+. ++.. .+.+|||+=.- .....+.++. ++|.|+
T Consensus 129 v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--------de~g-----~y~~Gd~i~~p---~~~~H~p~a~~~~~Cicl 192 (215)
T TIGR02451 129 VRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--------DETG-----VYGVGDFEEAD---GSVQHQPRTVSGGDCLCL 192 (215)
T ss_pred EEEEEECCCCccCCCcCCCcEEEEEEEEEEE--------cCCC-----ccCCCeEEECC---CCCCcCcccCCCCCeEEE
Confidence 3456677777777777777778889999842 1122 46777765442 2222344455 459888
Q ss_pred Eecccc
Q 040957 109 VLPHEH 114 (430)
Q Consensus 109 ~i~~~~ 114 (430)
.+.-..
T Consensus 193 ~v~dap 198 (215)
T TIGR02451 193 AVLDAP 198 (215)
T ss_pred EEecCC
Confidence 886653
No 160
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=39.89 E-value=1.6e+02 Score=24.72 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=35.9
Q ss_pred HHHhhceEEEecCCCEEEeCCC---------cCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC
Q 040957 26 RIADIVIVKRYGKGEYVVRDGD---------IGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG 89 (430)
Q Consensus 26 ~l~~~~~~~~~~~ge~i~~~g~---------~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~ 89 (430)
.|-+.+-.+.+--+-.++..|. ..+.|++|++|+..+. . ++.+ ..+++||+.|-.
T Consensus 32 ~lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~--~---d~~e----~~lrpGD~~gFp 95 (161)
T COG3837 32 RLGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLR--E---DGGE----TRLRPGDSAGFP 95 (161)
T ss_pred hhhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEE--E---CCee----EEecCCceeecc
Confidence 3444444444544444454443 3478999999999888 2 3333 578999999886
No 161
>PLN02370 acyl-ACP thioesterase
Probab=39.33 E-value=1.4e+02 Score=29.74 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE--CCeeEEEEEEec
Q 040957 184 LKIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ--KGNIIFTLLASF 238 (430)
Q Consensus 184 ~~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q--~g~~~~~~~~sf 238 (430)
...+..+++.|.++..-+..|++.+..-.-||.++.|.-.++. +|++++.+...+
T Consensus 196 ~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvW 252 (419)
T PLN02370 196 IWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRASSVW 252 (419)
T ss_pred eEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEE
Confidence 3567889999999999889999999999999999999999985 589988887654
No 162
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=38.89 E-value=64 Score=31.54 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=35.1
Q ss_pred eEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeecc
Q 040957 32 IVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGH 88 (430)
Q Consensus 32 ~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe 88 (430)
....+.+|.+.-.--.....+.+|++|++++. ..+.+|+. ....+++||+|=-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~--~~d~~g~~--~~~~L~~GD~~~f 122 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRIT--AVDENGRN--YIDDVGAGDLWYF 122 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEE--EEcCCCcE--EEeEECCCCEEEE
Confidence 34567787765433334567999999999999 54433332 3347899987644
No 163
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=38.73 E-value=39 Score=30.10 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=31.4
Q ss_pred EEeecceeCCeeeEEEEEEccCCCEEEEEeccceeccC
Q 040957 383 VIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRSP 420 (430)
Q Consensus 383 ~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~ 420 (430)
...+++..+.++..-+.-|+++|+|+|+++-+-.+...
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL 116 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence 45567778889999999999999999999887766543
No 164
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=38.44 E-value=1.4e+02 Score=22.22 Aligned_cols=64 Identities=17% Similarity=0.082 Sum_probs=41.0
Q ss_pred hceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEE
Q 040957 30 IVIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLV 109 (430)
Q Consensus 30 ~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~ 109 (430)
.+....+++|..+-.....+....+|++|.+..- .. .+.+|+++=.. .....+..+.+.|.++.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~--------~~-----~~~~G~~~~~p---~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG--------DG-----RYGAGDWLRLP---PGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET--------TC-----EEETTEEEEE----TTEEEEEEESSCEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC--------Cc-----cCCCCeEEEeC---CCCccccCcCCCEEEEE
Confidence 3556788899888776677778889999997643 11 35777765442 22344566777788775
No 165
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=37.12 E-value=1.5e+02 Score=27.23 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=44.4
Q ss_pred CcceeeeeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEEE--CCeeEEEEEEeccc
Q 040957 185 KIVHSLHCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAIQ--KGNIIFTLLASFQK 240 (430)
Q Consensus 185 ~~~~s~~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~Q--~g~~~~~~~~sf~~ 240 (430)
..+...++.+.+...-+..|+++...-.-+|-++.|...++. +|++++.|...+--
T Consensus 61 Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~Wvl 118 (261)
T PF01643_consen 61 WVLSRYQIEIHRYPRWGEKITIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVL 118 (261)
T ss_dssp EEEEEEEEEESS--BTT-EEEEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCCCEEEEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEE
Confidence 567788999999988889999999999999999999999999 89999999877643
No 166
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=36.09 E-value=99 Score=26.67 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=38.8
Q ss_pred CcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEEecccc
Q 040957 47 DIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLVLPHEH 114 (430)
Q Consensus 47 ~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i~~~~ 114 (430)
++.+.+|++++|.+.+. ..+ +| + .....+.+||+|=-. .+.++ +-++..+|.++.|.+..
T Consensus 52 ~~tdE~FyqleG~~~l~--v~d-~g-~-~~~v~L~eGd~fllP-~gvpH--sP~r~~~tv~LviE~~r 111 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLK--VQE-DG-K-RRDVPIREGEMFLLP-PHVPH--SPQREAGSIGLVIERKR 111 (177)
T ss_pred CCCceEEEEECCeEEEE--EEc-CC-c-eeeEEECCCCEEEeC-CCCCc--CCccCCCeEEEEEEeCC
Confidence 35688999999999988 432 22 2 234578899877543 22222 22345789999997754
No 167
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=34.79 E-value=57 Score=26.88 Aligned_cols=65 Identities=15% Similarity=-0.020 Sum_probs=39.5
Q ss_pred EEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEeccccccc---CCcceE--EeccCCeeccCCCCCcceeeEEEe
Q 040957 33 VKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEE---EDRPEF--QLKRYDYFGHGSPTIFRQGDVIAL 102 (430)
Q Consensus 33 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~---~~~~~~--~~~~G~~fGe~~~~~~~~~~v~A~ 102 (430)
...+++|..+...-..+..+++|++|..++. ....++. ...... .+++||+|--. .-....+.+.
T Consensus 38 ~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~--~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP---~G~~h~~~n~ 107 (144)
T PF00190_consen 38 RVLIEPGGLRAPHYHNADEIVYVIEGRGRVG--VVGPGGPQEEFRDFSQKVRLKAGDVFVVP---AGHPHWIIND 107 (144)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEESEEEEE--EEETTCSSSEEEEEEEEEEEETTEEEEE----TT-EEEEEEC
T ss_pred eeehhcCCccceeEeeeeEEeeeeccceEEE--EEecCCccccceeeeceeeeecccceeec---cceeEEEEcC
Confidence 4455888887765557899999999999976 3333331 001222 48888877653 2223445555
No 168
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=34.45 E-value=1.2e+02 Score=24.88 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=37.6
Q ss_pred eeeccCC-CCCCCeEEeEEeecceeC-CeeeEEEEEEccCCCEEEEEec
Q 040957 367 SMWFHRS-FRADDWLLFVIVSPVASK-ARGFVSGEMFNTKGELLVSLTQ 413 (430)
Q Consensus 367 si~f~~~-~~~~~W~l~~~~~~~~~~-gr~~~~~~i~~~~G~lvA~~~Q 413 (430)
.+.|+.+ ++.++=+..+.+.....+ |.+..++.++ -+|+++|++.=
T Consensus 85 ~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~-v~~~~va~a~l 132 (138)
T cd01289 85 KYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIE-DQGGVLASGRL 132 (138)
T ss_pred EEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEE-ECCEEEEEEEE
Confidence 5677776 455888999988888885 9999999999 68899998854
No 169
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=33.76 E-value=1.4e+02 Score=30.24 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=42.2
Q ss_pred eeeccCCCCCCCeEEeEEeecc-eeCCeeeEEEEEEccCCCEEEEEeccceec
Q 040957 367 SMWFHRSFRADDWLLFVIVSPV-ASKARGFVSGEMFNTKGELLVSLTQEALLR 418 (430)
Q Consensus 367 si~f~~~~~~~~W~l~~~~~~~-~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r 418 (430)
.+.|++|+.+++=+.++.+... ..+|.+..+++++ .+|++||++.-..++.
T Consensus 409 kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~-vdGelVaeael~~~v~ 460 (464)
T PRK13188 409 KVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAY-VNGKLVCEAELMAQIV 460 (464)
T ss_pred EEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEE-ECCEEEEEEEEEEEEe
Confidence 6788888888888888887654 4478889999999 8999999998777765
No 170
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=33.39 E-value=1.3e+02 Score=27.67 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=43.2
Q ss_pred ceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEc-cCCCEEEEEeccceeccCC
Q 040957 365 DHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFN-TKGELLVSLTQEALLRSPK 421 (430)
Q Consensus 365 d~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~-~~G~lvA~~~Q~~l~r~~~ 421 (430)
-+.|.+++.+..++=+-.++.......-++.=+-.|+| ++|++++.+.-.-++--.+
T Consensus 65 r~~i~i~r~P~~~e~i~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~ 122 (261)
T PF01643_consen 65 RYQIEIHRYPRWGEKITIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVLIDLE 122 (261)
T ss_dssp EEEEEESS--BTT-EEEEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEEEETT
T ss_pred EEEEEEEecCCCCCEEEEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEhh
Confidence 45677777667788899999999999999999999999 9999999999888766543
No 171
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=31.45 E-value=3e+02 Score=22.81 Aligned_cols=52 Identities=6% Similarity=-0.240 Sum_probs=33.0
Q ss_pred CCceeehhHHHHHHHHHHhccCC-CCCc----ceeeeeeeccCcCCCCCeEEEEEEe
Q 040957 160 KFGKVFGGQLVGQALAAASKTVD-CLKI----VHSLHCYFLLVGDLNIPIIYQVHRV 211 (430)
Q Consensus 160 ~~~~~~GG~~~a~al~Aa~~~~~-~~~~----~~s~~~~Fl~~~~~~~pi~~~V~~l 211 (430)
++..++|-++++++.....+... ++.. ...-.+.|++|..++..+.++++.+
T Consensus 55 g~~Ia~G~~t~sl~~~l~~~~~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~ 111 (149)
T cd03450 55 GGTIAHGFLTLSLLPALTPQLFRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLL 111 (149)
T ss_pred CCeEECHHHHHHHHHHHHHhcccCCCceEEEEeeccEEEeCcceeCCcEEEEEEEEE
Confidence 34578999988887665544322 1211 1223678999999877777766654
No 172
>PLN02370 acyl-ACP thioesterase
Probab=31.26 E-value=2.1e+02 Score=28.54 Aligned_cols=58 Identities=10% Similarity=-0.051 Sum_probs=47.2
Q ss_pred eecceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEcc-CCCEEEEEeccceecc
Q 040957 362 LSLDHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNT-KGELLVSLTQEALLRS 419 (430)
Q Consensus 362 ~sld~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~-~G~lvA~~~Q~~l~r~ 419 (430)
+-..+.|.|++++..++-+.+++.....++.++.-+-.|+|. +|+++|.+.-.-++.-
T Consensus 198 VLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD 256 (419)
T PLN02370 198 VVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMN 256 (419)
T ss_pred EEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence 344678888887888999999999988888888888899997 8999999887655443
No 173
>PRK10694 acyl-CoA esterase; Provisional
Probab=31.08 E-value=92 Score=25.42 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=32.2
Q ss_pred eeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEc
Q 040957 367 SMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFN 402 (430)
Q Consensus 367 si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~ 402 (430)
.|.|++|+..++++.+..+....++--..++.++|.
T Consensus 61 ~i~F~~Pv~~Gd~l~~~a~V~~~g~sS~~v~v~v~~ 96 (133)
T PRK10694 61 GMTFLRPVAVGDVVCCYARCVKTGTTSISINIEVWV 96 (133)
T ss_pred ceEECCCcccCcEEEEEEEEEEccCceEEEEEEEEE
Confidence 678999999999999999998888888888899995
No 174
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=31.05 E-value=2.6e+02 Score=29.94 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=47.3
Q ss_pred CceeehhHHHHHHHHHHhccCCCCCc--ceeeeeeeccCcCCCCCeEEEEEEe--ee----CCCeeEEEEEE-EECCeeE
Q 040957 161 FGKVFGGQLVGQALAAASKTVDCLKI--VHSLHCYFLLVGDLNIPIIYQVHRV--RD----GNSFATRRVDA-IQKGNII 231 (430)
Q Consensus 161 ~~~~~GG~~~a~al~Aa~~~~~~~~~--~~s~~~~Fl~~~~~~~pi~~~V~~l--r~----Gr~~s~~~V~~-~Q~g~~~ 231 (430)
...++|-++++++........+.... +..-.+.|.+|..++..+.++++.+ +. ++.+.+.++++ -|+|+++
T Consensus 585 ~~ia~G~l~~sl~~~l~~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V 664 (675)
T PRK11563 585 GRVAHGYFVLSAAAGLFVDPAPGPVLANYGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELV 664 (675)
T ss_pred CceeCHHHHHHHHHHHhhccCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECCCCEE
Confidence 34678877777766554333332111 1123788999999877776555544 32 22355566655 4889988
Q ss_pred EEEEEec
Q 040957 232 FTLLASF 238 (430)
Q Consensus 232 ~~~~~sf 238 (430)
+++...+
T Consensus 665 ~~~~~~~ 671 (675)
T PRK11563 665 ATYDILT 671 (675)
T ss_pred EEEEEHH
Confidence 8887654
No 175
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=31.01 E-value=5e+02 Score=25.19 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=40.6
Q ss_pred eeeeccCcCC-CCCeEEEEEEeeeCCCeeEEEEEEEE------CCeeEEEEEEeccccCC
Q 040957 191 HCYFLLVGDL-NIPIIYQVHRVRDGNSFATRRVDAIQ------KGNIIFTLLASFQKEEQ 243 (430)
Q Consensus 191 ~~~Fl~~~~~-~~pi~~~V~~lr~Gr~~s~~~V~~~Q------~g~~~~~~~~sf~~~~~ 243 (430)
.++|..+... ...+.+.-..-..||+---..|.+.| ....+..|..+|-..+.
T Consensus 68 ~i~f~~~~~~~~~d~i~~a~Vt~a~~sSMEv~i~V~q~~~~~~~~~~~~kA~f~fVard~ 127 (357)
T KOG2763|consen 68 RIDFEKPSEVGQVDIIIVAKVTWAGKSSMEVSIYVMQEDLATGEKSLVLKATFTFVARDA 127 (357)
T ss_pred EEEeeccccccceeEEEEEEEEeccccceEEEEEEEEehhccchhhheeeeEEEEEEecC
Confidence 3568775443 24677778888999999999999999 35678899999977643
No 176
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=30.55 E-value=46 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=25.4
Q ss_pred cceeCCeeeEEEEEEccCCCEEEEEeccceec
Q 040957 387 PVASKARGFVSGEMFNTKGELLVSLTQEALLR 418 (430)
Q Consensus 387 ~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r 418 (430)
..........++.|||++|+++|.+.+..=+|
T Consensus 79 ~~L~~d~~VldAsIYd~~G~lLA~S~~~~~vr 110 (210)
T PF10144_consen 79 NQLAKDPFVLDASIYDADGVLLAQSGESVSVR 110 (210)
T ss_pred HHHhcCCeEeEEEEECCCCCEEEEcCCCcchh
Confidence 44556778899999999999999998754444
No 177
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.28 E-value=25 Score=32.55 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.2
Q ss_pred eEEEEEEeeeCCCeeEEEEE
Q 040957 204 IIYQVHRVRDGNSFATRRVD 223 (430)
Q Consensus 204 i~~~V~~lr~Gr~~s~~~V~ 223 (430)
+.+.|..-|+||+++....-
T Consensus 68 VVWsVTDPRdgrrvalkK~p 87 (449)
T KOG0664|consen 68 VVWSVTDPRSGKRVALKKMP 87 (449)
T ss_pred EEEeccCCCCccchhHhhcc
Confidence 67899999999998765443
No 178
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=29.02 E-value=1.5e+02 Score=27.35 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=35.1
Q ss_pred eeeccC-CCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceec
Q 040957 367 SMWFHR-SFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLR 418 (430)
Q Consensus 367 si~f~~-~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r 418 (430)
.++++. +.+..+=+...++.....++....+..++|++|++++...--.+-+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d~~G~~~~~~~gl~~~~ 288 (295)
T PF14765_consen 236 RIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFDEDGRVVAELEGLTFRR 288 (295)
T ss_dssp EEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEETTSBEEEEEEEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEECCCCCEEEEEccEEEEE
Confidence 455553 4444444455555566777899999999999999999877644443
No 179
>PRK11171 hypothetical protein; Provisional
Probab=29.00 E-value=1.5e+02 Score=27.38 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=35.6
Q ss_pred hceEEEecCCCEEEe-CCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeec
Q 040957 30 IVIVKRYGKGEYVVR-DGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFG 87 (430)
Q Consensus 30 ~~~~~~~~~ge~i~~-~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fG 87 (430)
.+....+++|..+-. ......+.++|++|...+. . +++ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~--~----~~~---~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYR--L----NND---WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEE--E----CCE---EEEeCCCCEEE
Confidence 344578899988866 3566679999999999998 2 222 35688888553
No 180
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=28.52 E-value=1.6e+02 Score=27.13 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=35.1
Q ss_pred ceeeeccCCCCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEe
Q 040957 365 DHSMWFHRSFRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLT 412 (430)
Q Consensus 365 d~si~f~~~~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~ 412 (430)
+.+++|.++..+++-+.++++..+-+......+++++ ++|+++.++.
T Consensus 48 S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~-Q~g~~~~~a~ 94 (271)
T TIGR00189 48 SLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAV-QHGKTIFTLQ 94 (271)
T ss_pred eeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEE-ECCEEEEEEE
Confidence 3577898888888888888887766666666777776 6777776654
No 181
>COG5301 Phage-related tail fibre protein [General function prediction only]
Probab=28.47 E-value=90 Score=31.16 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEe
Q 040957 375 RADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLT 412 (430)
Q Consensus 375 ~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~ 412 (430)
.-..|+.-|..-+.--+|+-.-+.-|||+||+|||.+.
T Consensus 68 ~NpnqlIAElVlPetvGGwwiREvGlfDadG~liavgn 105 (587)
T COG5301 68 KNPNQLIAELVLPETVGGWWIREVGLFDADGKLIAVGN 105 (587)
T ss_pred CCccceeEEEeccccccceEEEEeeeecCCCCEEEEcc
Confidence 34578888888888888888999999999999999763
No 182
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=28.00 E-value=1.3e+02 Score=29.31 Aligned_cols=82 Identities=9% Similarity=-0.029 Sum_probs=46.1
Q ss_pred eEEEecCCCEEEeCCCc-CCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEEe
Q 040957 32 IVKRYGKGEYVVRDGDI-GEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLVL 110 (430)
Q Consensus 32 ~~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i 110 (430)
....+++|...-.-=.+ .+.+++|++|.+++. ..+.+|+. ....+++||++=-- .+..+...-..-++++++++
T Consensus 248 ~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~--v~d~~g~~--~~~~l~~GD~~~iP-~g~~H~i~N~G~e~l~fL~i 322 (367)
T TIGR03404 248 AIVTVEPGAMRELHWHPNADEWQYFIQGQARMT--VFAAGGNA--RTFDYQAGDVGYVP-RNMGHYVENTGDETLVFLEV 322 (367)
T ss_pred EEEEECCCCccCCeeCcCCCeEEEEEEEEEEEE--EEecCCcE--EEEEECCCCEEEEC-CCCeEEEEECCCCCEEEEEE
Confidence 35567787766443333 578999999999998 44434432 23568898854321 12222222222346777776
Q ss_pred cc-cccccc
Q 040957 111 PH-EHCNWL 118 (430)
Q Consensus 111 ~~-~~f~~l 118 (430)
-. ..+..+
T Consensus 323 f~s~~~~~i 331 (367)
T TIGR03404 323 FKADRFADV 331 (367)
T ss_pred ECCCCCcee
Confidence 33 344433
No 183
>PRK11171 hypothetical protein; Provisional
Probab=27.18 E-value=2.8e+02 Score=25.65 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=41.5
Q ss_pred EEEecCCCEEEeCCC--cCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEEe
Q 040957 33 VKRYGKGEYVVRDGD--IGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLVL 110 (430)
Q Consensus 33 ~~~~~~ge~i~~~g~--~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i 110 (430)
...+++|...-.... ..+.+++|++|.+.+. . +++ ...+.+||.+=-- .+.++...-..-++++++.+
T Consensus 65 ~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~--~---~g~----~~~L~~GDsi~~p-~~~~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 65 LVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT--L---EGK----THALSEGGYAYLP-PGSDWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE--E---CCE----EEEECCCCEEEEC-CCCCEEEEECCCCCEEEEEE
Confidence 456677765433322 2368899999999998 2 222 3678888865432 23344443334456777776
Q ss_pred c
Q 040957 111 P 111 (430)
Q Consensus 111 ~ 111 (430)
.
T Consensus 135 ~ 135 (266)
T PRK11171 135 R 135 (266)
T ss_pred E
Confidence 4
No 184
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=26.86 E-value=1.5e+02 Score=31.55 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=41.6
Q ss_pred eeeccCCCCCCCeEEeEEeeccee------CCeeeEEEEEEccCCCEEEEEeccceec
Q 040957 367 SMWFHRSFRADDWLLFVIVSPVAS------KARGFVSGEMFNTKGELLVSLTQEALLR 418 (430)
Q Consensus 367 si~f~~~~~~~~W~l~~~~~~~~~------~gr~~~~~~i~~~~G~lvA~~~Q~~l~r 418 (430)
.+.|++|+.+++=+..+.+..... .|+...+..+.|++|+.|.+.....|+.
T Consensus 605 ~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~Vl~~~~~~lv~ 662 (663)
T TIGR02278 605 NLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEPVATYDVLTLVA 662 (663)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEEHHhcc
Confidence 888999999999888877775442 2356778888999999999998877764
No 185
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=25.34 E-value=1.7e+02 Score=31.25 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=42.3
Q ss_pred eeeccCCCCCCCeEEeEEeeccee----C--CeeeEEEEEEccCCCEEEEEeccceec
Q 040957 367 SMWFHRSFRADDWLLFVIVSPVAS----K--ARGFVSGEMFNTKGELLVSLTQEALLR 418 (430)
Q Consensus 367 si~f~~~~~~~~W~l~~~~~~~~~----~--gr~~~~~~i~~~~G~lvA~~~Q~~l~r 418 (430)
.+.|++|+.+++=+..+.+..... + |....+..+.|++|+.|.++....|++
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V~~~~~~~lv~ 674 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELVATYDILTLVA 674 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECCCCEEEEEEEHHhcc
Confidence 688999999999988888776652 2 456777888899999999998888776
No 186
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=25.23 E-value=1.2e+02 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=19.8
Q ss_pred CCeEEEEEeeEEEEEEecccccccCCcceEEeccCCee
Q 040957 49 GEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYF 86 (430)
Q Consensus 49 ~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~f 86 (430)
...+++|++|.|++. .. .+-..+.+|+.|
T Consensus 33 ~~~vF~V~~G~v~Vt--i~-------~~~f~v~~G~~F 61 (85)
T PF11699_consen 33 NTMVFYVIKGKVEVT--IH-------ETSFVVTKGGSF 61 (85)
T ss_dssp EEEEEEEEESEEEEE--ET-------TEEEEEETT-EE
T ss_pred cEEEEEEEeCEEEEE--Ec-------CcEEEEeCCCEE
Confidence 356799999999999 33 223457777765
No 187
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=24.42 E-value=89 Score=21.21 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=11.5
Q ss_pred EEEEEccCCCEEEEEec
Q 040957 397 SGEMFNTKGELLVSLTQ 413 (430)
Q Consensus 397 ~~~i~~~~G~lvA~~~Q 413 (430)
....+++||+|||....
T Consensus 28 ~~aa~~pdG~lvAL~~~ 44 (56)
T PF09142_consen 28 PVAAFAPDGRLVALLEE 44 (56)
T ss_dssp -EEEE-TTS-EEEEEEE
T ss_pred eEEEECCCCcEEEEEEc
Confidence 35689999999999844
No 188
>PRK11246 hypothetical protein; Provisional
Probab=23.92 E-value=74 Score=28.34 Aligned_cols=31 Identities=6% Similarity=0.274 Sum_probs=23.7
Q ss_pred cceeCCeeeEEEEEEccCCCEEEEEecccee
Q 040957 387 PVASKARGFVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 387 ~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
..........++.|||++|.+||.+..---+
T Consensus 79 n~La~d~~VlDAsIY~~~G~llA~S~~~~~~ 109 (218)
T PRK11246 79 DQLTDESRILDASVYDEQGDLIARSGESVNV 109 (218)
T ss_pred HHHhcCCceeeEEEECCCCCEEEecCCCccH
Confidence 3445666788999999999999998754333
No 189
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=23.47 E-value=1.2e+02 Score=26.61 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=28.6
Q ss_pred eCCeeeEEEEEEccCCCEEEEEeccceeccCC
Q 040957 390 SKARGFVSGEMFNTKGELLVSLTQEALLRSPK 421 (430)
Q Consensus 390 ~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~~ 421 (430)
.-|......++.+.+|+.++++++-++++.+.
T Consensus 75 ~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~S 106 (199)
T PF06775_consen 75 DLGMFMVSLELLSANGKVLASSSRPAMLPYRS 106 (199)
T ss_pred CCCeEEEEEEEEcCCCcEEEEEecceecccCC
Confidence 56788999999999999999999999998654
No 190
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=23.27 E-value=2e+02 Score=26.95 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=37.6
Q ss_pred ceee--eeeeccCcCCCCCeEEEEEEeeeCCCeeEEEEEEE-ECCeeEEEEE
Q 040957 187 VHSL--HCYFLLVGDLNIPIIYQVHRVRDGNSFATRRVDAI-QKGNIIFTLL 235 (430)
Q Consensus 187 ~~s~--~~~Fl~~~~~~~pi~~~V~~lr~Gr~~s~~~V~~~-Q~g~~~~~~~ 235 (430)
.-|+ .++|.++.+.+.=+.|+++..+.|...+..+.+++ ++|++++++.
T Consensus 226 ~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~~G~LvAs~~ 277 (286)
T PRK10526 226 IATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTV 277 (286)
T ss_pred EEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECCCCCEEEEEE
Confidence 3455 45899999999999999999966666666677777 6788876653
No 191
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.22 E-value=74 Score=33.62 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=26.2
Q ss_pred CeeeEEEEEEccCCCEEEEEeccceeccCCCCC
Q 040957 392 ARGFVSGEMFNTKGELLVSLTQEALLRSPKPKP 424 (430)
Q Consensus 392 gr~~~~~~i~~~~G~lvA~~~Q~~l~r~~~~~~ 424 (430)
..+-+-+.=|+.||+++|++-|+|+||.++...
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIE 298 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEec
Confidence 334455667889999999999999999876553
No 192
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=23.10 E-value=99 Score=28.59 Aligned_cols=76 Identities=20% Similarity=-0.042 Sum_probs=46.4
Q ss_pred ceEEEecCCCEEEeCCCcCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccC----CCCCcceeeEEEecceE
Q 040957 31 VIVKRYGKGEYVVRDGDIGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHG----SPTIFRQGDVIALTELT 106 (430)
Q Consensus 31 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~----~~~~~~~~~v~A~~~~~ 106 (430)
+....+++|+.+-..-+.-....++++|.+.+. . +|.+ ....-..-++|... .-.......+.|.++++
T Consensus 29 ~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~--~---~g~~--~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae 101 (261)
T PF04962_consen 29 FGVLRLEAGESLEFELERRELGVVNLGGKATVT--V---DGEE--FYELGGRESVFDGPPDALYVPRGTKVVIFASTDAE 101 (261)
T ss_dssp CCCEEEECCHCCCCCCCSEEEEEEEESSSEEEE--E---TTEE--EEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEE
T ss_pred eEEEEecCCCEEeccCCCcEEEEEEeCCEEEEE--e---CCce--EEEecccccccCCCCcEEEeCCCCeEEEEEcCCCE
Confidence 345677777777665555567788899999998 2 2211 22333445777655 23444557888888888
Q ss_pred EEEeccc
Q 040957 107 CLVLPHE 113 (430)
Q Consensus 107 ~l~i~~~ 113 (430)
++.....
T Consensus 102 ~~~~sap 108 (261)
T PF04962_consen 102 FAVCSAP 108 (261)
T ss_dssp EEEEEEE
T ss_pred EEEEccc
Confidence 8876543
No 193
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=22.97 E-value=3.5e+02 Score=23.67 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=22.7
Q ss_pred CCeEEEEEeeEEEEEEecccccccCCcceEEeccCCee
Q 040957 49 GEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYF 86 (430)
Q Consensus 49 ~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~f 86 (430)
...+|+|++|...+. ..+.+|. .....+.+|+++
T Consensus 97 ~~EiyyvlsG~g~~~--l~~~~G~--~~~~~v~pGd~v 130 (191)
T PRK04190 97 RAEIYYGLKGKGLML--LQDPEGE--ARWIEMEPGTVV 130 (191)
T ss_pred CCEEEEEEeCEEEEE--EecCCCc--EEEEEECCCCEE
Confidence 348999999999988 3322322 344567888764
No 194
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=22.70 E-value=2.4e+02 Score=22.68 Aligned_cols=44 Identities=9% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEecccee
Q 040957 374 FRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALL 417 (430)
Q Consensus 374 ~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~ 417 (430)
.+..+++--+...+..++|+.....+|.|.+|..|.+-.|--.|
T Consensus 76 ~~G~efYGk~ltlp~l~dG~ytvk~eiL~s~g~vV~t~s~~~~I 119 (124)
T PF13752_consen 76 SNGKEFYGKELTLPALGDGTYTVKSEILDSQGTVVQTYSYPFTI 119 (124)
T ss_pred eCCceeeeeEEEeccCCCCcEEEEEEeeccCCCEEEeeeEeEEE
Confidence 56778888999999999999999999999999999998886554
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=22.31 E-value=71 Score=32.35 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCCCeEEeEEeecceeCCeeeEEEEEEccCCCEEEEEeccceecc
Q 040957 374 FRADDWLLFVIVSPVASKARGFVSGEMFNTKGELLVSLTQEALLRS 419 (430)
Q Consensus 374 ~~~~~W~l~~~~~~~~~~gr~~~~~~i~~~~G~lvA~~~Q~~l~r~ 419 (430)
-+...|...+. -....-|+.||+++|++.|+|.+|.
T Consensus 281 NPv~~w~~~~g----------~in~f~FS~DG~~LA~VSqDGfLRv 316 (636)
T KOG2394|consen 281 NPVARWHIGEG----------SINEFAFSPDGKYLATVSQDGFLRI 316 (636)
T ss_pred CccceeEeccc----------cccceeEcCCCceEEEEecCceEEE
Confidence 45566754433 4556678899999999999999985
No 196
>PF09157 TruB-C_2: Pseudouridine synthase II TruB, C-terminal; InterPro: IPR015240 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1ZL3_A 1K8W_A 1R3F_A.
Probab=21.49 E-value=86 Score=21.15 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=14.9
Q ss_pred EEEEEccCCCEEEEEec--cceeccC
Q 040957 397 SGEMFNTKGELLVSLTQ--EALLRSP 420 (430)
Q Consensus 397 ~~~i~~~~G~lvA~~~Q--~~l~r~~ 420 (430)
..++||++|+.++.+.- ++.++|+
T Consensus 30 ~vrvy~~~~~FlGig~~~~~g~L~P~ 55 (58)
T PF09157_consen 30 LVRVYDEDGRFLGIGEIDDDGRLKPK 55 (58)
T ss_dssp EEEEETTTTEEEEEEEE-TTS-EEEE
T ss_pred eEEEECCCCEEEEEEEEccCCEEEee
Confidence 56777888888777653 3555543
No 197
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=21.23 E-value=1.5e+02 Score=17.66 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=16.6
Q ss_pred CCeeeEEEEEEccCCCEEEEEecc
Q 040957 391 KARGFVSGEMFNTKGELLVSLTQE 414 (430)
Q Consensus 391 ~gr~~~~~~i~~~~G~lvA~~~Q~ 414 (430)
++-+....-.|++||+.++-+++.
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred cCCccccCEEEecCCCEEEEEecC
Confidence 444577788999999888777654
No 198
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=21.04 E-value=1.6e+02 Score=22.54 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred CCeEEEEEEeeeCCCeeEEEEEEEE--CCeeEEEEE
Q 040957 202 IPIIYQVHRVRDGNSFATRRVDAIQ--KGNIIFTLL 235 (430)
Q Consensus 202 ~pi~~~V~~lr~Gr~~s~~~V~~~Q--~g~~~~~~~ 235 (430)
..+.+.|..|++|+-++-..|+++. +|+++.++.
T Consensus 13 ~~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~ 48 (97)
T PF11974_consen 13 DGLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGK 48 (97)
T ss_pred CCEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeee
Confidence 4579999999999999999999985 788777766
No 199
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=20.06 E-value=2.8e+02 Score=23.78 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=32.4
Q ss_pred cCCeEEEEEeeEEEEEEecccccccCCcceEEeccCCeeccCCCCCcceeeEEEecceEEEEec
Q 040957 48 IGEGIYFIWEGEAEVSVSDSVQAEEEDRPEFQLKRYDYFGHGSPTIFRQGDVIALTELTCLVLP 111 (430)
Q Consensus 48 ~~~~ly~I~~G~v~~~~~~~~~~g~~~~~~~~~~~G~~fGe~~~~~~~~~~v~A~~~~~~l~i~ 111 (430)
.+..+++|++|.+.+. . +++ ...+.+||.+=-- .+.++.+....-+++.++.+.
T Consensus 127 ~~~E~~~Vl~G~~~~~--~---~~~----~~~l~~Gd~~~~~-~~~~H~~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 127 QGEEIGTVLEGEIVLT--I---NGQ----DYHLVAGQSYAIN-TGIPHSFSNTSAGICRIISAH 180 (185)
T ss_pred CCcEEEEEEEeEEEEE--E---CCE----EEEecCCCEEEEc-CCCCeeeeCCCCCCeEEEEEe
Confidence 3468899999999988 2 222 2568888755332 234444444444556666653
Done!