BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040959
         (391 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana
           GN=FLA19 PE=2 SV=2
          Length = 248

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 106/166 (63%), Gaps = 9/166 (5%)

Query: 11  ILFTLTILLCFPTTPAGIPTSDLDAVLLLLHAGGHTLFANAIATSDLLFDLLSLPSLTLF 70
           I     I+LC P    G+P  +L+  + +L   G  LFANAI TSDLLFDLLS  SLTLF
Sbjct: 13  IFLGALIILCLPHPSTGVPLEELERAIAILRVRGRALFANAIITSDLLFDLLSDESLTLF 72

Query: 71  APTDPSLFAVDMTQTPPFYLSILRLHVLPLRLSWTELLQLISPSNNNNNSSRLPTLLPSR 130
           APTD  LF +DMT + PFY+S LRLH +PLRLS + L  L        NSS LPTLLPS 
Sbjct: 73  APTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSL-------PNSSSLPTLLPSH 125

Query: 131 DLHVTRGDSG--ALLVGGVQVVMPGLYYSSYVAVHGLAGILTFRSP 174
            L +T+  S   ++ + GVQ+++PGL+   ++AVHGLA +L   +P
Sbjct: 126 RLLLTKHSSSNDSIFLDGVQLLIPGLFDGQHIAVHGLADLLPLTAP 171


>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana
           GN=FLA21 PE=2 SV=1
          Length = 353

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 80  VDMTQTPPFYLSILRLHVLPLRLSWTELLQLISPSNNNNNSSRLPTLLPSRDLHVTRGD- 138
           V ++   PF   ++R H+L  RL++ +   +       ++ + + TL P +DL +TR + 
Sbjct: 262 VSLSSASPFLYEVVRHHILVQRLTYKDFASM-------SDKATVKTLDPYQDLTITRRNV 314

Query: 139 ---SGALLVGGVQVVMPGLYYSSYVAVHGLAGIL 169
               G  ++ GV++V P ++ SS   +HG++  L
Sbjct: 315 NSSGGDFMISGVEIVDPDMFSSSNFVIHGISHTL 348


>sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis
           thaliana GN=FLA20 PE=3 SV=1
          Length = 424

 Score = 44.3 bits (103), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 67  LTLFAPTDPSLFAVDMTQTPPFYLSILRLHVLPLRLSWTELLQLISPSNNNNNSSRLPTL 126
           +T+FAP D ++   + T     Y++I R HV+   L W +L +           S L T+
Sbjct: 291 ITVFAPIDEAI--PNPTTKFSDYVTIFRGHVVSQLLLWKDLQKFAKEG------SILQTV 342

Query: 127 LPSRDLHVT-RGDSGALLVGGVQVVMPGLYYSSYVAVHGLAGIL 169
           L   ++ ++  GD   LL+ GV ++ P LY + ++AVHG   ++
Sbjct: 343 LKGYEIEISLSGD--ILLLNGVPLIYPDLYVNDWIAVHGFNQMI 384


>sp|P0DH64|Y4891_SELML FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella
           moellendorffii GN=SELMODRAFT_448915 PE=2 SV=1
          Length = 260

 Score = 42.4 bits (98), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 12/149 (8%)

Query: 28  IPTSDLDAVLLLLHAGGHTLFANAIATSDLLFDLLSLPSLTLFAPTDPSLFAVDMTQTPP 87
           +P+SD+  ++  +   G T+ A A+A S  L  L+ + S TL  P++ ++  VD   +  
Sbjct: 67  LPSSDVQPLVSNMIGQGFTVAA-AVAQS--LQTLIPIRS-TLLIPSNNAIAGVDANLSQE 122

Query: 88  FYLSILRLHVLPLRLSWTELLQLISPSNNNNNSSRLPTLLPSRDLHVTRGDSGALLVGGV 147
             ++ L+ HVL    S+  L       + N+  + LPT+L    + VT    G   +  V
Sbjct: 123 DIINTLQYHVLTFPTSFEAL-------SRNDVGAELPTMLQGEMITVTSNSPGNFTLNEV 175

Query: 148 QVVMPGLYYSS-YVAVHGLAGILTFRSPI 175
            +  P +  S+ ++A HG+  +L + S +
Sbjct: 176 NITHPDVCSSTRFIACHGIDRVLAYNSSL 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,064,185
Number of Sequences: 539616
Number of extensions: 7719601
Number of successful extensions: 32336
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 551
Number of HSP's that attempted gapping in prelim test: 29419
Number of HSP's gapped (non-prelim): 2466
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)