BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040960
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 101
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 101
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 101
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 102
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 102
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 102
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 101
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 102
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 101
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY+++CP+ +V + +D A+++RL FHDC V GCDGS+LL N++
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
I +E + N IR +D++N+IK ++E CP+TVSCADI+
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADIL 101
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL FHDC V+GCD SILL N+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 102
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY +CP+A +V+ +++ + SD A+++RL FHDC V+GCD SILL ++
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
I +E + N R ++++ IK +LE CP VSC+D++
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVL 102
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+ILRL F DC V+GCD SILL N+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 102
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 17 GELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSN 76
G L FY +CP+A +V+ +++ SD A+++RL FHDC V GCD SILL NS
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 77 GITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
I +E + N R ++++ IK +LE CP VSC D++
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVL 103
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L FY SCP+ +V++ + ++ SD AA+IL L F DC V+GCD SILL N+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
TE + N R +I+ +K ++E CP TVSCAD++
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLL 101
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 19 LVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNGI 78
L +FY CP+A +K + + + A++LRL FHDC V GCD S+LL +++
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 79 TTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
T E + N IR ++I+ IK +E +CP VSCADI+
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADIL 101
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L Y KSCP+ +V++++ + ++I AA+++RL FHDC V+GCD S+LL +G
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLL---DG 57
Query: 78 ITTETLSDKNFG-IRKVDIINEIKGSLEKICPETVSCADII 117
+E L+ N R ++I+ IK ++E CP VSCADI+
Sbjct: 58 ADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADIL 98
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 19 LVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNGI 78
L FY ++CP AE +V+E ++ + DI AA +LRL FHDC V GCD S+LL S
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 79 TTETLSDKNFGIRK--VDIINEIKGSLEKICP-ETVSCADII 117
E + N +R +N+I+ LE+ C VSC+DI+
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDIL 110
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 18 ELVLHFYKKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNG 77
+L + FY SCP+AE LV++ + ++ A ++R+ FHDC V GCD S+LL ++
Sbjct: 1 DLQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTAN 60
Query: 78 ITTETLS-DKNFGIRKVDIINEIKGSLEKICPETVSCADII 117
T E + N +R ++I K ++E CP+TVSCADI+
Sbjct: 61 NTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADIL 101
>pdb|2P53|A Chain A, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
pdb|2P53|B Chain B, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
Length = 382
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 25 KKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNGITTETL 83
K CP AE+ E++++ L+ IL F D Q++GC G + ++ ETL
Sbjct: 29 KSVCPVAEL--PPEIEQRSLN-----GAILSPGFIDVQLNGCGGVQFNDTAEAVSVETL 80
>pdb|1YMY|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YMY|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YRR|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|1YRR|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|2P50|A Chain A, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|B Chain B, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|C Chain C, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|D Chain D, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
Length = 382
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 25 KKSCPSAEMLVKEEMKRKMLSDISSAATILRLAFHDCQVDGCDGSILLGNSNGITTETL 83
K CP AE+ E++++ L+ IL F D Q++GC G + ++ ETL
Sbjct: 29 KSVCPVAEL--PPEIEQRSLN-----GAILSPGFIDVQLNGCGGVQFNDTAEAVSVETL 80
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 65 GCDGSILLGNSNGITTETLSDKNFGIRKV 93
G G+I +G N + TE + FG+R+V
Sbjct: 131 GNGGAIRVGTPNEVATEVSVNTAFGVRRV 159
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 29 PSAEMLVKEEMKRKMLSDISSAATIL-RLAFHDCQVDGCDGSILLGNSNGITTETLSDKN 87
PS + E +K +S S+ A+ + R DC L G I T L+ +N
Sbjct: 256 PSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKLKG---AILTVMLATRN 312
Query: 88 FGIRKVDIINEIKGSLEKI 106
F +RK +II + +E I
Sbjct: 313 FSVRKQEIIKVTEQLIEAI 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,339,403
Number of Sequences: 62578
Number of extensions: 109535
Number of successful extensions: 291
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 23
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)