Query 040962
Match_columns 247
No_of_seqs 178 out of 1237
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 3.7E-57 8.1E-62 406.8 33.3 245 2-247 148-392 (394)
2 PLN03003 Probable polygalactur 100.0 3.8E-57 8.2E-62 410.3 32.9 246 1-247 140-389 (456)
3 PLN02188 polygalacturonase/gly 100.0 7.7E-57 1.7E-61 406.3 33.4 246 2-247 158-404 (404)
4 PLN02793 Probable polygalactur 100.0 1.3E-56 2.9E-61 409.0 32.9 243 2-247 180-423 (443)
5 PLN03010 polygalacturonase 100.0 1.3E-55 2.7E-60 397.8 33.4 245 1-247 159-403 (409)
6 PLN02218 polygalacturonase ADP 100.0 1.9E-55 4.1E-60 399.8 31.2 236 2-246 195-430 (431)
7 PF00295 Glyco_hydro_28: Glyco 100.0 7E-50 1.5E-54 354.7 28.2 229 2-236 95-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 8.3E-30 1.8E-34 235.0 16.9 153 2-160 241-405 (542)
9 PLN02218 polygalacturonase ADP 99.9 8.6E-22 1.9E-26 179.7 24.6 204 2-231 150-393 (431)
10 PLN03010 polygalacturonase 99.9 1.9E-21 4.1E-26 176.1 25.7 204 2-231 133-359 (409)
11 PLN03003 Probable polygalactur 99.9 2.4E-21 5.2E-26 176.7 25.1 204 2-231 107-342 (456)
12 PLN02793 Probable polygalactur 99.9 9.3E-21 2E-25 173.6 26.1 194 2-220 137-369 (443)
13 PLN02155 polygalacturonase 99.9 8.7E-21 1.9E-25 171.3 25.0 195 2-221 109-339 (394)
14 PLN02188 polygalacturonase/gly 99.9 2.3E-20 5.1E-25 169.1 27.0 197 2-221 116-350 (404)
15 PF00295 Glyco_hydro_28: Glyco 99.9 1.6E-20 3.5E-25 166.8 22.8 195 2-221 54-284 (326)
16 PF03718 Glyco_hydro_49: Glyco 99.7 1.5E-14 3.3E-19 131.8 20.1 196 6-220 327-554 (582)
17 COG5434 PGU1 Endopygalactoruna 99.6 1.8E-14 4E-19 133.6 16.2 154 21-192 237-398 (542)
18 TIGR03805 beta_helix_1 paralle 99.1 3.2E-09 6.9E-14 94.0 17.1 139 4-152 59-202 (314)
19 PF12541 DUF3737: Protein of u 99.1 5.4E-10 1.2E-14 94.1 10.8 123 4-156 94-228 (277)
20 PF13229 Beta_helix: Right han 98.8 4.1E-08 8.8E-13 77.0 10.6 139 1-159 2-144 (158)
21 PF03718 Glyco_hydro_49: Glyco 98.7 2.4E-07 5.1E-12 85.4 13.9 198 2-221 271-516 (582)
22 PF12541 DUF3737: Protein of u 98.7 1.9E-07 4.1E-12 79.0 10.4 102 4-129 114-231 (277)
23 TIGR03805 beta_helix_1 paralle 98.6 6.4E-06 1.4E-10 73.0 18.9 153 1-160 79-250 (314)
24 COG3866 PelB Pectate lyase [Ca 98.5 1.5E-05 3.3E-10 68.7 16.6 122 2-123 95-229 (345)
25 smart00656 Amb_all Amb_all dom 98.5 2.4E-06 5.1E-11 70.4 11.3 100 23-123 32-144 (190)
26 PF13229 Beta_helix: Right han 98.4 3E-06 6.5E-11 66.3 10.7 117 24-161 2-121 (158)
27 TIGR03808 RR_plus_rpt_1 twin-a 98.4 1E-05 2.2E-10 73.8 14.0 30 2-31 138-167 (455)
28 PF05048 NosD: Periplasmic cop 98.4 2.7E-05 5.9E-10 65.9 15.7 133 2-158 16-150 (236)
29 PF00544 Pec_lyase_C: Pectate 98.3 8.5E-06 1.8E-10 67.7 11.0 115 5-123 18-158 (200)
30 TIGR03808 RR_plus_rpt_1 twin-a 98.3 3.3E-05 7.3E-10 70.5 15.0 141 4-159 111-290 (455)
31 PF05048 NosD: Periplasmic cop 98.2 7.3E-05 1.6E-09 63.3 14.4 112 2-129 38-151 (236)
32 PF12708 Pectate_lyase_3: Pect 98.0 0.00083 1.8E-08 55.7 16.6 106 33-156 94-223 (225)
33 PF12708 Pectate_lyase_3: Pect 97.8 0.00029 6.3E-09 58.5 11.6 107 10-127 94-224 (225)
34 smart00656 Amb_all Amb_all dom 97.6 0.0043 9.2E-08 51.1 15.3 113 2-124 34-167 (190)
35 COG3866 PelB Pectate lyase [Ca 97.1 0.016 3.5E-07 50.4 13.2 100 2-101 119-241 (345)
36 PF00544 Pec_lyase_C: Pectate 96.5 0.015 3.3E-07 48.2 8.1 90 3-92 40-157 (200)
37 PLN02773 pectinesterase 95.3 0.76 1.6E-05 40.9 13.9 113 28-154 99-213 (317)
38 PLN02480 Probable pectinestera 95.3 0.74 1.6E-05 41.4 13.8 112 29-153 130-252 (343)
39 COG3420 NosD Nitrous oxidase a 94.4 3 6.6E-05 37.2 15.0 84 7-91 76-191 (408)
40 PLN02773 pectinesterase 94.2 1.7 3.7E-05 38.6 13.3 136 4-156 98-243 (317)
41 PLN02665 pectinesterase family 93.3 4.4 9.6E-05 36.8 14.5 116 26-154 149-273 (366)
42 PF01696 Adeno_E1B_55K: Adenov 92.7 3.5 7.7E-05 37.5 12.9 57 31-92 121-177 (386)
43 PLN02665 pectinesterase family 92.4 4.5 9.8E-05 36.7 13.3 133 4-153 150-298 (366)
44 PLN02682 pectinesterase family 92.3 6.9 0.00015 35.6 14.3 112 29-153 161-280 (369)
45 PF03211 Pectate_lyase: Pectat 92.3 6.1 0.00013 33.1 13.3 56 31-92 61-117 (215)
46 PRK10123 wcaM putative colanic 91.9 0.84 1.8E-05 39.8 7.6 116 31-150 151-282 (464)
47 PRK10531 acyl-CoA thioesterase 91.6 8.8 0.00019 35.5 14.2 70 29-99 204-289 (422)
48 PLN02708 Probable pectinestera 91.4 6.8 0.00015 37.6 13.8 114 28-154 327-450 (553)
49 PLN02480 Probable pectinestera 91.3 6.2 0.00013 35.5 12.8 77 6-91 130-216 (343)
50 PLN02634 probable pectinestera 91.3 10 0.00023 34.3 14.2 80 30-122 148-234 (359)
51 PF01095 Pectinesterase: Pecti 91.0 2.6 5.6E-05 37.2 10.0 112 29-153 85-202 (298)
52 PLN02682 pectinesterase family 90.9 7.8 0.00017 35.2 13.1 131 5-153 160-305 (369)
53 PLN02176 putative pectinestera 90.8 9.2 0.0002 34.4 13.4 81 29-122 120-208 (340)
54 PLN02671 pectinesterase 90.8 8.6 0.00019 34.8 13.2 111 29-152 152-269 (359)
55 PLN02745 Putative pectinestera 90.2 13 0.00029 36.0 14.7 80 29-121 370-451 (596)
56 PLN02916 pectinesterase family 89.9 11 0.00025 35.6 13.6 112 29-153 275-392 (502)
57 PLN02170 probable pectinestera 89.7 12 0.00026 35.6 13.8 113 28-153 310-427 (529)
58 PLN02170 probable pectinestera 89.6 17 0.00038 34.6 14.8 132 4-153 309-452 (529)
59 PLN02432 putative pectinestera 89.5 9.1 0.0002 33.7 12.1 110 29-152 92-204 (293)
60 PLN02468 putative pectinestera 89.4 13 0.00028 35.8 13.9 80 29-121 343-424 (565)
61 PLN02506 putative pectinestera 89.4 7.8 0.00017 37.1 12.3 114 27-153 315-434 (537)
62 PF09251 PhageP22-tail: Salmon 89.0 14 0.00031 34.1 13.0 69 80-151 263-348 (549)
63 PLN02497 probable pectinestera 89.0 17 0.00036 32.7 14.1 113 28-153 112-239 (331)
64 PLN02217 probable pectinestera 88.7 14 0.0003 36.4 13.6 136 6-153 335-486 (670)
65 TIGR03804 para_beta_helix para 88.6 0.61 1.3E-05 28.4 3.0 27 52-78 2-28 (44)
66 PLN02497 probable pectinestera 88.5 8.1 0.00018 34.6 11.2 131 5-153 112-264 (331)
67 PF01095 Pectinesterase: Pecti 88.4 3.9 8.5E-05 36.0 9.1 135 5-156 84-239 (298)
68 PLN02432 putative pectinestera 88.2 18 0.00038 31.9 13.7 132 4-153 90-230 (293)
69 PLN02671 pectinesterase 88.2 14 0.00031 33.5 12.6 130 6-153 152-295 (359)
70 PLN02176 putative pectinestera 88.1 11 0.00024 33.9 11.8 130 6-153 120-271 (340)
71 PLN02304 probable pectinestera 87.8 20 0.00043 32.8 13.3 112 29-153 160-287 (379)
72 PLN02201 probable pectinestera 87.5 23 0.0005 33.8 14.1 113 28-153 290-408 (520)
73 PRK10123 wcaM putative colanic 87.3 3.9 8.4E-05 35.9 8.1 71 74-152 295-373 (464)
74 PLN02713 Probable pectinestera 87.2 15 0.00032 35.5 12.8 112 29-153 338-455 (566)
75 PLN02217 probable pectinestera 87.0 8.6 0.00019 37.7 11.2 113 29-153 335-452 (670)
76 PLN02698 Probable pectinestera 86.8 12 0.00026 35.4 11.8 67 30-99 269-337 (497)
77 PLN02488 probable pectinestera 86.7 28 0.0006 33.1 14.0 114 29-154 282-400 (509)
78 PF09251 PhageP22-tail: Salmon 86.7 15 0.00033 33.9 11.7 81 57-153 263-367 (549)
79 PLN02301 pectinesterase/pectin 86.6 18 0.00039 34.8 12.9 112 29-153 321-438 (548)
80 PLN02933 Probable pectinestera 86.6 21 0.00045 34.1 13.3 113 29-153 303-420 (530)
81 PLN02416 probable pectinestera 86.6 16 0.00034 35.1 12.5 112 29-153 315-432 (541)
82 PLN02634 probable pectinestera 86.4 19 0.0004 32.7 12.3 128 7-152 148-290 (359)
83 PLN02708 Probable pectinestera 86.3 29 0.00062 33.4 14.2 137 5-153 327-487 (553)
84 PLN02745 Putative pectinestera 86.3 23 0.0005 34.4 13.6 135 6-153 370-521 (596)
85 PLN03043 Probable pectinestera 86.2 22 0.00048 34.1 13.3 113 29-153 311-428 (538)
86 PLN02468 putative pectinestera 86.2 17 0.00038 35.0 12.7 136 6-153 343-490 (565)
87 PLN02506 putative pectinestera 86.0 25 0.00054 33.7 13.6 132 4-153 315-459 (537)
88 PLN02416 probable pectinestera 85.8 27 0.00058 33.5 13.7 138 5-153 314-466 (541)
89 PLN02995 Probable pectinestera 85.7 17 0.00038 34.8 12.4 113 29-153 310-427 (539)
90 PLN02990 Probable pectinestera 84.9 25 0.00055 33.9 13.1 114 29-154 345-463 (572)
91 PLN02313 Pectinesterase/pectin 84.9 23 0.0005 34.4 12.9 113 29-154 360-478 (587)
92 PLN02314 pectinesterase 84.6 34 0.00074 33.2 13.9 80 29-121 363-444 (586)
93 PLN02713 Probable pectinestera 84.6 34 0.00073 33.1 13.8 138 5-154 337-490 (566)
94 PRK10531 acyl-CoA thioesterase 84.6 28 0.0006 32.3 12.7 20 73-92 230-249 (422)
95 PLN02484 probable pectinestera 84.2 25 0.00054 34.1 12.8 112 29-153 358-475 (587)
96 PLN02995 Probable pectinestera 84.2 41 0.00088 32.3 14.2 140 5-156 309-464 (539)
97 PLN02304 probable pectinestera 84.0 34 0.00074 31.3 14.5 132 5-153 159-312 (379)
98 PLN02197 pectinesterase 83.9 31 0.00066 33.5 13.2 112 29-153 362-480 (588)
99 PLN02916 pectinesterase family 83.9 40 0.00087 32.0 14.5 140 5-156 274-429 (502)
100 PLN02201 probable pectinestera 83.9 41 0.00089 32.1 14.4 140 5-156 290-445 (520)
101 PLN02314 pectinesterase 83.4 25 0.00054 34.1 12.4 77 6-91 363-444 (586)
102 PLN02698 Probable pectinestera 83.1 43 0.00094 31.8 14.0 139 5-156 267-422 (497)
103 PLN02197 pectinesterase 82.9 47 0.001 32.2 14.0 142 5-156 361-517 (588)
104 PLN02301 pectinesterase/pectin 82.7 46 0.001 32.0 13.8 137 5-153 320-472 (548)
105 PF07602 DUF1565: Protein of u 82.5 16 0.00035 31.3 9.7 100 23-130 89-195 (246)
106 PLN02990 Probable pectinestera 82.5 49 0.0011 32.0 14.1 142 5-156 344-499 (572)
107 COG3420 NosD Nitrous oxidase a 82.2 14 0.0003 33.2 9.3 97 2-99 123-245 (408)
108 PLN02484 probable pectinestera 80.9 57 0.0012 31.7 14.5 140 5-156 357-512 (587)
109 PLN02488 probable pectinestera 79.8 57 0.0012 31.0 14.2 138 5-153 281-433 (509)
110 PF01696 Adeno_E1B_55K: Adenov 78.4 13 0.00028 33.9 8.1 45 56-101 119-165 (386)
111 PLN02933 Probable pectinestera 78.1 66 0.0014 30.8 14.8 140 5-156 302-457 (530)
112 PLN02313 Pectinesterase/pectin 74.4 88 0.0019 30.4 13.5 137 5-153 359-511 (587)
113 PLN03043 Probable pectinestera 73.1 91 0.002 30.0 14.6 141 4-156 309-465 (538)
114 TIGR03804 para_beta_helix para 70.9 14 0.0003 22.2 4.6 40 25-69 2-41 (44)
115 PF07602 DUF1565: Protein of u 64.4 92 0.002 26.7 14.4 99 52-160 91-195 (246)
116 PF14592 Chondroitinas_B: Chon 64.3 1.2E+02 0.0027 28.1 13.1 134 7-148 66-235 (425)
117 COG4677 PemB Pectin methyleste 59.9 27 0.00059 31.2 5.9 14 30-43 220-233 (405)
118 PF03211 Pectate_lyase: Pectat 59.0 1.1E+02 0.0023 25.7 15.7 133 7-147 60-194 (215)
119 smart00710 PbH1 Parallel beta- 55.8 16 0.00035 18.3 2.6 9 83-91 4-12 (26)
120 COG4677 PemB Pectin methyleste 33.3 1.5E+02 0.0032 26.8 6.2 44 57-100 220-273 (405)
121 PF12251 zf-SNAP50_C: snRNA-ac 25.9 1.1E+02 0.0025 25.1 4.2 39 7-45 81-121 (196)
122 PF14592 Chondroitinas_B: Chon 21.3 3.7E+02 0.0081 25.1 6.9 41 57-99 198-242 (425)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=3.7e-57 Score=406.79 Aligned_cols=245 Identities=45% Similarity=0.775 Sum_probs=226.4
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
|+|.+|++++|+||+++|||+|++++.+|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++
T Consensus 148 i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~ 227 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTR 227 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCc
Confidence 78999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred eEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEEe
Q 040962 82 NINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQ 161 (247)
Q Consensus 82 nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~ 161 (247)
||+|+||.|..+||++|||+|++.+.+.++||+|+||+|.++.+|++||+|.++++|.|+||+|+||+|+++++||.|++
T Consensus 228 nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q 307 (394)
T PLN02155 228 NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQ 307 (394)
T ss_pred eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEe
Confidence 99999999999999999999887667899999999999999999999999865457999999999999999999999999
Q ss_pred eeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeecccccCCCcc
Q 040962 162 MYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQ 241 (247)
Q Consensus 162 ~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~ 241 (247)
.|+......+...+.+.|+||+|+||+++.....++.|.|.++.||+||+|+||+++..++ +++.+.|+++.|.+.+++
T Consensus 308 ~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~-~~~~~~C~n~~G~~~~~~ 386 (394)
T PLN02155 308 NYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKG-TPATSFCFNAVGKSLGVI 386 (394)
T ss_pred cccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCC-CccCcEEeccEeEEcccC
Confidence 9986433222234568999999999999987778899999999999999999999999865 366899999999999999
Q ss_pred cCCCCC
Q 040962 242 KPPSCL 247 (247)
Q Consensus 242 ~p~~~~ 247 (247)
.|+|||
T Consensus 387 ~p~~c~ 392 (394)
T PLN02155 387 QPTSCL 392 (394)
T ss_pred Cccccc
Confidence 999997
No 2
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=3.8e-57 Score=410.30 Aligned_cols=246 Identities=42% Similarity=0.748 Sum_probs=225.3
Q ss_pred CeEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCc
Q 040962 1 SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGS 80 (247)
Q Consensus 1 ~i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~ 80 (247)
.|+|.+|+|++|+||+++|||+|++++.+|++|+|++++|.++.+++||||||+.+|+||+|+||+|.++||||++|+++
T Consensus 140 ~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs 219 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGT 219 (456)
T ss_pred EEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCC
Confidence 37899999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EeEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEE
Q 040962 81 TNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVID 160 (247)
Q Consensus 81 ~nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~ 160 (247)
+||+|+||+|..+|||+|||+|+++..+.|+||+|+||+|.++.+|++||+|.+ ++|.|+||+|+||+|+++.+||.|+
T Consensus 220 ~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Id 298 (456)
T PLN03003 220 SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIID 298 (456)
T ss_pred ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEE
Confidence 999999999999999999999987666789999999999999999999999997 4799999999999999999999999
Q ss_pred eeeCCCCC--CCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecC-C-CCccCeeeeccccc
Q 040962 161 QMYCPHGS--CNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNG-R-DGAATSSCNFVDGD 236 (247)
Q Consensus 161 ~~y~~~~~--~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~-~-~~~~~~~c~~~~~~ 236 (247)
+.|+.... +.+..++.+.|+||+|+||+++.....++.|.|+++.||+||+|+||+++... + +.++.+.|+|+.|.
T Consensus 299 q~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~ 378 (456)
T PLN03003 299 QFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGA 378 (456)
T ss_pred cccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccc
Confidence 99985332 11123456899999999999988778899999999999999999999999873 2 23578999999999
Q ss_pred CCCcccCCCCC
Q 040962 237 SYGTQKPPSCL 247 (247)
Q Consensus 237 ~~~~~~p~~~~ 247 (247)
+.++++|+|||
T Consensus 379 ~~~~~~~~~C~ 389 (456)
T PLN03003 379 STIAVPGLECL 389 (456)
T ss_pred cCceECCCCcc
Confidence 99989999997
No 3
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=7.7e-57 Score=406.29 Aligned_cols=246 Identities=52% Similarity=0.902 Sum_probs=227.4
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
|+|.+|++++|+||+|+|||+|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~ 237 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNS 237 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCc
Confidence 78999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred eEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCC-CCceEEcEEEEeEEEeCCCccEEEE
Q 040962 82 NINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASP-QANVASGFTFENIFMSNVENPIVID 160 (247)
Q Consensus 82 nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~-~~g~i~nI~f~ni~~~~~~~~i~i~ 160 (247)
||+|+||.|..+|||+|||.|++++.+.++||+|+||+|.++.+|++||+|.+. .+|.|+||+|+||+|+++.+||.|+
T Consensus 238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~ 317 (404)
T PLN02188 238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIID 317 (404)
T ss_pred cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEE
Confidence 999999999999999999999887788899999999999999999999999752 3589999999999999999999999
Q ss_pred eeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeecccccCCCc
Q 040962 161 QMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGT 240 (247)
Q Consensus 161 ~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~ 240 (247)
+.|+....+.+..+..+.|+||+|+||+++.....++.|.|.++.||+||+|+||+++.+++.+...+.|+++++.+.|+
T Consensus 318 ~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~ 397 (404)
T PLN02188 318 QKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGT 397 (404)
T ss_pred ccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEccc
Confidence 99987554433334568999999999999987677899999999999999999999998865445679999999999999
Q ss_pred ccCCCCC
Q 040962 241 QKPPSCL 247 (247)
Q Consensus 241 ~~p~~~~ 247 (247)
++|+||+
T Consensus 398 ~~p~~C~ 404 (404)
T PLN02188 398 QIPPPCP 404 (404)
T ss_pred CcCCCCC
Confidence 9999996
No 4
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.3e-56 Score=408.96 Aligned_cols=243 Identities=41% Similarity=0.781 Sum_probs=225.9
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
|+|.+|+|++|+||+|+|||+|++++.+|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++++
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~ 259 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSS 259 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcC
Confidence 78999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred eEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEEe
Q 040962 82 NINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQ 161 (247)
Q Consensus 82 nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~ 161 (247)
||+|+||+|..+|||+|||+|++.+.+.++||+|+||+|.++.+|++||+|.+ ++|.|+||+|+||+|+++.+||.|++
T Consensus 260 nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q 338 (443)
T PLN02793 260 RIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQ 338 (443)
T ss_pred CEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEe
Confidence 99999999999999999999988777889999999999999999999999987 47999999999999999999999999
Q ss_pred eeCCCCC-CCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeecccccCCCc
Q 040962 162 MYCPHGS-CNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGT 240 (247)
Q Consensus 162 ~y~~~~~-~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~ 240 (247)
.|+.... |. .++..+.|+||+|+||+++.....++.|.|.++.||+||+|+||+++..+++ ...+.|+++.|.+.++
T Consensus 339 ~Y~~~~~~~~-~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~ 416 (443)
T PLN02793 339 YYCDSRKPCA-NQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQ 416 (443)
T ss_pred eecCCCCCCC-CCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCe
Confidence 9976332 32 3345689999999999999876678999999999999999999999988764 5578999999999999
Q ss_pred ccCCCCC
Q 040962 241 QKPPSCL 247 (247)
Q Consensus 241 ~~p~~~~ 247 (247)
+.|+|||
T Consensus 417 ~~p~~C~ 423 (443)
T PLN02793 417 VYPPPCF 423 (443)
T ss_pred EcCCccc
Confidence 9999996
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.3e-55 Score=397.82 Aligned_cols=245 Identities=43% Similarity=0.722 Sum_probs=226.7
Q ss_pred CeEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCc
Q 040962 1 SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGS 80 (247)
Q Consensus 1 ~i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~ 80 (247)
+|+|.+|+|++|+||+|+|||+|++++.+|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|+++
T Consensus 159 ~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs 238 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGS 238 (409)
T ss_pred eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCC
Confidence 37899999999999999999999999999999999999999988789999999999999999999999999999999999
Q ss_pred EeEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEE
Q 040962 81 TNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVID 160 (247)
Q Consensus 81 ~nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~ 160 (247)
+|+.|+++.|..+|||+|||+|+++....|+||+|+||+|.++.+|++||+|.+ ++|.|+||+||||+|+++++||.|+
T Consensus 239 ~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~ 317 (409)
T PLN03010 239 SNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIID 317 (409)
T ss_pred CcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEE
Confidence 999999999999999999999887666779999999999999999999999987 4799999999999999999999999
Q ss_pred eeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeecccccCCCc
Q 040962 161 QMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGT 240 (247)
Q Consensus 161 ~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~ 240 (247)
+.|+........+++.+.|+||+|+||+++...+.++.|.|++..||+||+|+||+++.+++. ++.+.|.++++.+.++
T Consensus 318 q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~-~~~~~C~nv~g~~~~~ 396 (409)
T PLN03010 318 QQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGE-KPKVECQNVEGESSDT 396 (409)
T ss_pred eeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCC-ccceEeeCccccccCC
Confidence 999874432223456789999999999999877789999999999999999999999988754 5689999999999999
Q ss_pred ccCCCCC
Q 040962 241 QKPPSCL 247 (247)
Q Consensus 241 ~~p~~~~ 247 (247)
++|+|||
T Consensus 397 ~~~~~C~ 403 (409)
T PLN03010 397 DLMRDCF 403 (409)
T ss_pred CCCCccc
Confidence 9999997
No 6
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.9e-55 Score=399.79 Aligned_cols=236 Identities=43% Similarity=0.797 Sum_probs=218.4
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
|+|++|+|++|+||+|+|||+|++++.+|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++++
T Consensus 195 i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~ 274 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQ 274 (431)
T ss_pred EEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCc
Confidence 78999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred eEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEEe
Q 040962 82 NINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQ 161 (247)
Q Consensus 82 nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~ 161 (247)
||+|+||+|..+|||+|||+|++...+.|+||+|+||+|.++.+|+|||+|.+ ++|.|+||+|+||+|+++++||.|++
T Consensus 275 nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq 353 (431)
T PLN02218 275 NVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQ 353 (431)
T ss_pred eEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEe
Confidence 99999999999999999999877666789999999999999999999999987 57999999999999999999999999
Q ss_pred eeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeecccccCCCcc
Q 040962 162 MYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGDSYGTQ 241 (247)
Q Consensus 162 ~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~ 241 (247)
.|+....|. .++..+.|+||+|+||+++.+...++.|.|.++.||+||+|+||+++.. ...|+|+.+...|.+
T Consensus 354 ~Y~~~~~~~-~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~ 426 (431)
T PLN02218 354 DYCDKSKCT-SQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAV 426 (431)
T ss_pred eccCCCCCC-CCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccC
Confidence 998755443 3345689999999999999876788999999999999999999999842 367999999999976
Q ss_pred cCCCC
Q 040962 242 KPPSC 246 (247)
Q Consensus 242 ~p~~~ 246 (247)
.| +|
T Consensus 427 ~p-~c 430 (431)
T PLN02218 427 SP-QC 430 (431)
T ss_pred CC-CC
Confidence 65 88
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=7e-50 Score=354.70 Aligned_cols=229 Identities=44% Similarity=0.725 Sum_probs=203.2
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
|+|.+|++++|+|++|+|||+|++++..|+||+|++++|.++...+|+||||+.+|+||+|+||+|.++||||++|++..
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ 174 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSG 174 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEEC
T ss_pred eeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCccccccccc
Confidence 78999999999999999999999999999999999999999877799999999999999999999999999999999888
Q ss_pred eEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEEe
Q 040962 82 NINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQ 161 (247)
Q Consensus 82 nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~ 161 (247)
||+|+||+|..+||++|||++..+....++||+|+||+|.++.+|++||++++ ++|.|+||+||||+|+++.+|+.|++
T Consensus 175 ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f~ni~~~~v~~pi~i~~ 253 (326)
T PF00295_consen 175 NILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITFENITMENVKYPIFIDQ 253 (326)
T ss_dssp EEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEEEEEEEEEESEEEEEEE
T ss_pred ceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEEEEEEecCCceEEEEEe
Confidence 99999999999999999999754333469999999999999999999999986 57999999999999999999999999
Q ss_pred eeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecCCCCEEcEEEEeEEEEecCCCCccCeeeeccccc
Q 040962 162 MYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSKTFPCENIVLQDIYLVHNGRDGAATSSCNFVDGD 236 (247)
Q Consensus 162 ~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~~~~~~ 236 (247)
.|.....+. .++..+.|+||+|+||+++.....++.|.|.++.||+||+|+||+++. + ...+.|++++..
T Consensus 254 ~y~~~~~~~-~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g---~~~~~c~nv~~~ 323 (326)
T PF00295_consen 254 DYRDGGPCG-KPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G---KKPAQCKNVPSG 323 (326)
T ss_dssp EECTTEESS-CSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S---BSESEEBSCCTT
T ss_pred ccccccccC-cccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C---CcCeEEECCCCC
Confidence 998733322 224557999999999999998667999999999999999999999998 3 567999998754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=8.3e-30 Score=234.96 Aligned_cols=153 Identities=31% Similarity=0.487 Sum_probs=142.7
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC--
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG-- 79 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~-- 79 (247)
+.|..|+||+++|++|.++|.|++|+..|+|++++|++|.+.... |+||||+.+|+||+|++|+|.++||||++|++
T Consensus 241 ~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~ 319 (542)
T COG5434 241 VVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAG 319 (542)
T ss_pred EEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEeecccC
Confidence 678999999999999999999999999999999999999998754 99999999999999999999999999999996
Q ss_pred ---------cEeEEEEeeEEcCCCe-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEE
Q 040962 80 ---------STNINVTDVTCGPGHG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIF 149 (247)
Q Consensus 80 ---------~~nV~I~nc~~~~~~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~ 149 (247)
++||.|+||++..+|| +.+||| +.++++||++|||.|.++.+||+||+..+ ++|.++||+|+++.
T Consensus 320 ~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v~nI~~~~~~ 394 (542)
T COG5434 320 LDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGVRNIVFEDNK 394 (542)
T ss_pred CcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cceeEEEEEEeccc
Confidence 5899999999999996 999999 78999999999999999999999999987 57999999999999
Q ss_pred EeCCCccEEEE
Q 040962 150 MSNVENPIVID 160 (247)
Q Consensus 150 ~~~~~~~i~i~ 160 (247)
|.++..+..|.
T Consensus 395 ~~nv~t~~~i~ 405 (542)
T COG5434 395 MRNVKTKLSIN 405 (542)
T ss_pred ccCcccceeee
Confidence 99986554443
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.90 E-value=8.6e-22 Score=179.66 Aligned_cols=204 Identities=19% Similarity=0.308 Sum_probs=161.0
Q ss_pred eEEEEEccEEEEee--EEeCCC--------------------CcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCccc
Q 040962 2 MVFNFVTNSRISGI--TSVNSK--------------------NAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKG 59 (247)
Q Consensus 2 i~~~~~~nv~i~gi--ti~n~~--------------------~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~n 59 (247)
|.|.+.+|++|.|= -.+|.. ...+.+.+|+|++|+++++.+++. + .+++..|+|
T Consensus 150 i~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~-w---~i~~~~~~n 225 (431)
T PLN02218 150 IMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ-I---QISIEKCSN 225 (431)
T ss_pred EEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC-E---EEEEEceee
Confidence 56778899999882 222221 135789999999999999999763 2 488999999
Q ss_pred EEEEeeEEcc-----CCceEEecCCcEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEec
Q 040962 60 IKITHSSIGT-----GDDCIALLSGSTNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWA 133 (247)
Q Consensus 60 V~I~n~~i~~-----~DD~i~i~s~~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~ 133 (247)
|+|++.+|.+ .-|+|.+.+ ++||+|+||.+..+ ++|+|++. .+||+|+||++.. .+|+.|+|..
T Consensus 226 V~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIksg--------s~nI~I~n~~c~~-GHGisIGS~g 295 (431)
T PLN02218 226 VQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIESG--------SQNVQINDITCGP-GHGISIGSLG 295 (431)
T ss_pred EEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecCC--------CceEEEEeEEEEC-CCCEEECcCC
Confidence 9999999987 358999998 89999999999987 58999873 5899999999965 5799999865
Q ss_pred CC-CCceEEcEEEEeEEEeCCCccEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecC---------
Q 040962 134 SP-QANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSK--------- 203 (247)
Q Consensus 134 ~~-~~g~i~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~--------- 203 (247)
.. ..+.|+||+++|+++.+..++++|+.+ +.+.+.++||+|+||++... ..|+.|....
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~----------~Gg~G~v~nI~f~ni~m~~V-~~pI~Idq~Y~~~~~~~~~ 364 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTDNGVRIKTY----------QGGSGTASNIIFQNIQMENV-KNPIIIDQDYCDKSKCTSQ 364 (431)
T ss_pred CCCCCceEEEEEEEccEEecCCcceEEeec----------CCCCeEEEEEEEEeEEEEcc-cccEEEEeeccCCCCCCCC
Confidence 31 247899999999999999999999985 23357999999999999987 4677775321
Q ss_pred --CCCEEcEEEEeEEEEecCCCCccCeeee
Q 040962 204 --TFPCENIVLQDIYLVHNGRDGAATSSCN 231 (247)
Q Consensus 204 --~~~~~ni~~~nv~i~~~~~~~~~~~~c~ 231 (247)
...++||+|+||+.+.... .+....|+
T Consensus 365 ~s~v~I~nI~~~NI~gtsa~~-~ai~l~cs 393 (431)
T PLN02218 365 QSAVQVKNVVYRNISGTSASD-VAITFNCS 393 (431)
T ss_pred CCCeEEEEEEEEeEEEEecCC-cEEEEEEC
Confidence 1248999999999987642 23334444
No 10
>PLN03010 polygalacturonase
Probab=99.90 E-value=1.9e-21 Score=176.05 Aligned_cols=204 Identities=17% Similarity=0.226 Sum_probs=163.1
Q ss_pred eEEEEEccEEEEeeEEeCCC---Cc-EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccC-----Cc
Q 040962 2 MVFNFVTNSRISGITSVNSK---NA-HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTG-----DD 72 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~---~~-~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~-----DD 72 (247)
+.|.+.+|+.|.|--.++.. .| .+.+.+|+|++|+++++.+++. + .+++..|++|+|++.+|.+. -|
T Consensus 133 i~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~-~---~i~i~~~~nv~i~~i~I~a~~~s~NTD 208 (409)
T PLN03010 133 ISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK-N---HISIKTCNYVAISKINILAPETSPNTD 208 (409)
T ss_pred EEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc-e---EEEEeccccEEEEEEEEeCCCCCCCCC
Confidence 46788899999987777653 35 5899999999999999999763 2 48889999999999999863 58
Q ss_pred eEEecCCcEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCC-CCceEEcEEEEeEEE
Q 040962 73 CIALLSGSTNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASP-QANVASGFTFENIFM 150 (247)
Q Consensus 73 ~i~i~s~~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~-~~g~i~nI~f~ni~~ 150 (247)
+|.+.+ ++||+|+||.+..+ ++|+|++. -.++.|+++.+... +|+.|++.... ....|+||+|+|+++
T Consensus 209 GiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~~i 278 (409)
T PLN03010 209 GIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHCTF 278 (409)
T ss_pred ceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEeeEE
Confidence 999988 89999999999987 58999973 35788888888654 69999987531 235699999999999
Q ss_pred eCCCccEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEec---C---------CCCEEcEEEEeEEEE
Q 040962 151 SNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCS---K---------TFPCENIVLQDIYLV 218 (247)
Q Consensus 151 ~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~---~---------~~~~~ni~~~nv~i~ 218 (247)
.+..++++|+.+. .+.+.++||+|+||++... .+|+.|... . ...++||+|+|++.+
T Consensus 279 ~~t~~GirIKt~~----------G~~G~v~nItf~nI~m~~v-~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT 347 (409)
T PLN03010 279 NQTTNGARIKTWQ----------GGQGYARNISFENITLINT-KNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGT 347 (409)
T ss_pred eCCCcceEEEEec----------CCCEEEEEeEEEeEEEecC-CccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEE
Confidence 9999999999851 2347899999999999986 578877532 1 125899999999998
Q ss_pred ecCCCCccCeeee
Q 040962 219 HNGRDGAATSSCN 231 (247)
Q Consensus 219 ~~~~~~~~~~~c~ 231 (247)
.... .+....|+
T Consensus 348 ~~~~-~~i~l~Cs 359 (409)
T PLN03010 348 TSNE-NAITLKCS 359 (409)
T ss_pred eCCC-ccEEEEeC
Confidence 6653 24455654
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.90 E-value=2.4e-21 Score=176.66 Aligned_cols=204 Identities=13% Similarity=0.183 Sum_probs=163.3
Q ss_pred eEEEEEccEEEEeeEEeCCC---Cc--------EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccC
Q 040962 2 MVFNFVTNSRISGITSVNSK---NA--------HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTG 70 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~---~~--------~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~ 70 (247)
|.|.+.++++|.|=-.+|.. .| .+.+.+|+|++|+++++.+++.. .+++..|+||+|++.+|.+.
T Consensus 107 I~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ap 182 (456)
T PLN03003 107 ILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRINAP 182 (456)
T ss_pred EEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEeCC
Confidence 67888999999986555542 23 68999999999999999997641 48889999999999999873
Q ss_pred -----CceEEecCCcEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCC-CCceEEcE
Q 040962 71 -----DDCIALLSGSTNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASP-QANVASGF 143 (247)
Q Consensus 71 -----DD~i~i~s~~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~-~~g~i~nI 143 (247)
-|+|.+.+ ++||+|+||.+..+ ++|+|++. .+||+|+||++.. .+||.|+|.... ..+.|+||
T Consensus 183 ~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiksg--------s~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV 252 (456)
T PLN03003 183 ESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINSG--------TSNIHISGIDCGP-GHGISIGSLGKDGETATVENV 252 (456)
T ss_pred CCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCCC--------CccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEE
Confidence 48999998 89999999999987 58999863 5899999999976 479999987531 23679999
Q ss_pred EEEeEEEeCCCccEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecC--------------CCCEEc
Q 040962 144 TFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSK--------------TFPCEN 209 (247)
Q Consensus 144 ~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~--------------~~~~~n 209 (247)
+++|+++.+..++++|+.+. .+.+.++||+|+||.+... ..|+.|.... ...++|
T Consensus 253 ~v~n~~~~~T~nGvRIKT~~----------Gg~G~v~nItf~nI~m~nV-~~pI~Idq~Y~~~~~~~~~~~~~s~v~Isn 321 (456)
T PLN03003 253 CVQNCNFRGTMNGARIKTWQ----------GGSGYARMITFNGITLDNV-ENPIIIDQFYNGGDSDNAKDRKSSAVEVSK 321 (456)
T ss_pred EEEeeEEECCCcEEEEEEeC----------CCCeEEEEEEEEeEEecCc-cceEEEEcccCCCCCCCcccCCCCCcEEEe
Confidence 99999999999999999851 2347899999999999887 4687775321 135899
Q ss_pred EEEEeEEEEecCCCCccCeeee
Q 040962 210 IVLQDIYLVHNGRDGAATSSCN 231 (247)
Q Consensus 210 i~~~nv~i~~~~~~~~~~~~c~ 231 (247)
|+|+||+.+.... .+..+.|+
T Consensus 322 I~f~NI~GTs~~~-~ai~l~Cs 342 (456)
T PLN03003 322 VVFSNFIGTSKSE-YGVDFRCS 342 (456)
T ss_pred EEEEeEEEEeCcc-ceEEEEeC
Confidence 9999999876543 23445554
No 12
>PLN02793 Probable polygalacturonase
Probab=99.89 E-value=9.3e-21 Score=173.59 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=156.2
Q ss_pred eEEEEEccEEEEeeEEeCCC--------------------CcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEE
Q 040962 2 MVFNFVTNSRISGITSVNSK--------------------NAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIK 61 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~--------------------~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~ 61 (247)
|.+.+.+|++|.|=-.+|.. ...+.+.+|+|++|+++++.+++. + .+.+..|+||+
T Consensus 137 i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~-~---~i~~~~~~nv~ 212 (443)
T PLN02793 137 LYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQ-M---HIAFTNCRRVT 212 (443)
T ss_pred EEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCC-e---EEEEEccCcEE
Confidence 45777889998875444332 124788999999999999999763 2 48889999999
Q ss_pred EEeeEEccC-----CceEEecCCcEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCC
Q 040962 62 ITHSSIGTG-----DDCIALLSGSTNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASP 135 (247)
Q Consensus 62 I~n~~i~~~-----DD~i~i~s~~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~ 135 (247)
|++.+|.+. -|+|.+.+ ++||+|+||++..+ ++|+|++. .+||+|+|+.+... +|+.|++....
T Consensus 213 i~~l~I~~p~~spNTDGIdi~~-s~nV~I~n~~I~~gDDcIaik~~--------s~nI~I~n~~c~~G-hGisIGSlg~~ 282 (443)
T PLN02793 213 ISGLKVIAPATSPNTDGIHISA-SRGVVIKDSIVRTGDDCISIVGN--------SSRIKIRNIACGPG-HGISIGSLGKS 282 (443)
T ss_pred EEEEEEECCCCCCCCCcEeeec-cceEEEEeCEEeCCCCeEEecCC--------cCCEEEEEeEEeCC-ccEEEecccCc
Confidence 999999863 58999998 89999999999987 58999852 58999999999665 69999986431
Q ss_pred -CCceEEcEEEEeEEEeCCCccEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecC---C-------
Q 040962 136 -QANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSK---T------- 204 (247)
Q Consensus 136 -~~g~i~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~---~------- 204 (247)
..+.|+||+|+|+++.+..++++|+.+ +.+.+.++||+|+||+++.. ..|+.|.... .
T Consensus 283 ~~~~~V~nV~v~n~~~~~t~~GirIKt~----------~g~~G~v~nItf~ni~m~nv-~~pI~I~q~Y~~~~~~~~~~t 351 (443)
T PLN02793 283 NSWSEVRDITVDGAFLSNTDNGVRIKTW----------QGGSGNASKITFQNIFMENV-SNPIIIDQYYCDSRKPCANQT 351 (443)
T ss_pred CCCCcEEEEEEEccEEeCCCceEEEEEe----------CCCCEEEEEEEEEeEEEecC-CceEEEEeeecCCCCCCCCCC
Confidence 247799999999999999999999985 12347899999999999887 4677775321 1
Q ss_pred --CCEEcEEEEeEEEEec
Q 040962 205 --FPCENIVLQDIYLVHN 220 (247)
Q Consensus 205 --~~~~ni~~~nv~i~~~ 220 (247)
..++||+|+||+.+..
T Consensus 352 s~v~I~nI~~~nI~Gt~~ 369 (443)
T PLN02793 352 SAVKVENISFVHIKGTSA 369 (443)
T ss_pred CCeEEEeEEEEEEEEEEc
Confidence 2489999999998864
No 13
>PLN02155 polygalacturonase
Probab=99.89 E-value=8.7e-21 Score=171.27 Aligned_cols=195 Identities=13% Similarity=0.197 Sum_probs=155.5
Q ss_pred eEEEEEccEEEEeeEEeCCCC---c--------------EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEe
Q 040962 2 MVFNFVTNSRISGITSVNSKN---A--------------HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITH 64 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~---~--------------~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n 64 (247)
+.|.+.+++.|.| -..|... | .+.+.+|++++|+++++.+++. + -+++..|+||+|++
T Consensus 109 i~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~-w---~i~~~~~~nv~i~~ 183 (394)
T PLN02155 109 ILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV-S---HMTLNGCTNVVVRN 183 (394)
T ss_pred EEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCC-e---EEEEECeeeEEEEE
Confidence 4667777777777 3333221 2 4799999999999999999763 2 48889999999999
Q ss_pred eEEccC-----CceEEecCCcEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCC-CC
Q 040962 65 SSIGTG-----DDCIALLSGSTNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASP-QA 137 (247)
Q Consensus 65 ~~i~~~-----DD~i~i~s~~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~-~~ 137 (247)
.+|.+. -|+|.+.+ ++||+|+||.+..+ ++|+|++. .+||+|+|+.+... +|+.|++.... ..
T Consensus 184 v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~g--------s~nI~I~n~~c~~G-hGisIGS~g~~~~~ 253 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGPG--------TRNFLITKLACGPG-HGVSIGSLAKELNE 253 (394)
T ss_pred EEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCCC--------CceEEEEEEEEECC-ceEEeccccccCCC
Confidence 999873 38999988 89999999999987 58999862 58999999999864 79999986422 25
Q ss_pred ceEEcEEEEeEEEeCCCccEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEec--C----------CC
Q 040962 138 NVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCS--K----------TF 205 (247)
Q Consensus 138 g~i~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~--~----------~~ 205 (247)
+.|+||+++|+++.+..++++|+.+.. .+.+.++||+|+||+++.. ..|+.|... + ..
T Consensus 254 ~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v-~~pI~i~q~Y~~~~~~~~~~~s~v 323 (394)
T PLN02155 254 DGVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNV-ENPIIIDQNYCPTHEGCPNEYSGV 323 (394)
T ss_pred CcEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCc-cccEEEEecccCCCCCCcCCCCCe
Confidence 889999999999999999999997411 2357999999999999887 467777421 1 12
Q ss_pred CEEcEEEEeEEEEecC
Q 040962 206 PCENIVLQDIYLVHNG 221 (247)
Q Consensus 206 ~~~ni~~~nv~i~~~~ 221 (247)
.++||+|+||+.+...
T Consensus 324 ~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 324 KISQVTYKNIQGTSAT 339 (394)
T ss_pred EEEEEEEEeeEEEecC
Confidence 5899999999998764
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.88 E-value=2.3e-20 Score=169.13 Aligned_cols=197 Identities=14% Similarity=0.213 Sum_probs=155.8
Q ss_pred eEEEEEccEEEEeeEEeCCC---Cc----------------EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEE
Q 040962 2 MVFNFVTNSRISGITSVNSK---NA----------------HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKI 62 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~---~~----------------~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I 62 (247)
+.|..++|++|.|--.+|.. .| .+.+..|++++|+++++.+++. + .+++..|+||+|
T Consensus 116 i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~-w---~i~~~~~~~v~i 191 (404)
T PLN02188 116 IEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF-F---HIALVECRNFKG 191 (404)
T ss_pred EEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC-e---EEEEEccccEEE
Confidence 34556788888875444432 12 4688999999999999999763 2 588999999999
Q ss_pred EeeEEcc-----CCceEEecCCcEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecC-C
Q 040962 63 THSSIGT-----GDDCIALLSGSTNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWAS-P 135 (247)
Q Consensus 63 ~n~~i~~-----~DD~i~i~s~~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~-~ 135 (247)
++.+|.+ .-|+|.+.+ ++||+|+||.+..+ ++|+|++. .+||+|+|+.+.. .+|+.|++... +
T Consensus 192 ~~v~I~~~~~spNtDGidi~~-s~nV~I~n~~I~~GDDcIaiksg--------~~nI~I~n~~c~~-ghGisiGSlG~~~ 261 (404)
T PLN02188 192 SGLKISAPSDSPNTDGIHIER-SSGVYISDSRIGTGDDCISIGQG--------NSQVTITRIRCGP-GHGISVGSLGRYP 261 (404)
T ss_pred EEEEEeCCCCCCCCCcEeeeC-cccEEEEeeEEeCCCcEEEEccC--------CccEEEEEEEEcC-CCcEEeCCCCCCC
Confidence 9999987 358999998 89999999999987 58999863 3799999999955 47999988432 1
Q ss_pred CCceEEcEEEEeEEEeCCCccEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEec------------C
Q 040962 136 QANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCS------------K 203 (247)
Q Consensus 136 ~~g~i~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~------------~ 203 (247)
..+.|+||+|+|+++.+..++++|+.+.+ .++.+.++||+|+||++... ..|+.|... .
T Consensus 262 ~~~~V~nV~v~n~~~~~t~~GiriKt~~g--------~~~~G~v~nI~f~ni~m~~v-~~pI~i~~~Y~~~~~~~~~~~s 332 (404)
T PLN02188 262 NEGDVTGLVVRDCTFTGTTNGIRIKTWAN--------SPGKSAATNMTFENIVMNNV-TNPIIIDQKYCPFYSCESKYPS 332 (404)
T ss_pred cCCcEEEEEEEeeEEECCCcEEEEEEecC--------CCCceEEEEEEEEeEEecCc-cceEEEEccccCCCCCCcCCCC
Confidence 24679999999999999999999998522 12347899999999999887 467777521 1
Q ss_pred CCCEEcEEEEeEEEEecC
Q 040962 204 TFPCENIVLQDIYLVHNG 221 (247)
Q Consensus 204 ~~~~~ni~~~nv~i~~~~ 221 (247)
...++||+|+||+.+...
T Consensus 333 ~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 333 GVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred CcEEEeEEEEEEEEEecC
Confidence 235899999999998754
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.88 E-value=1.6e-20 Score=166.80 Aligned_cols=195 Identities=24% Similarity=0.316 Sum_probs=153.9
Q ss_pred eEEEEEccEEEEeeEEeCCC------------------CcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEE
Q 040962 2 MVFNFVTNSRISGITSVNSK------------------NAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKIT 63 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~------------------~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~ 63 (247)
|++.+++++.|.|=-..+.. ...+.+..|++++|+++++.+++. + .+.+..|+||+|+
T Consensus 54 i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~-w---~~~~~~~~nv~i~ 129 (326)
T PF00295_consen 54 IYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPF-W---HIHINDCDNVTIS 129 (326)
T ss_dssp EEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SS-E---SEEEESEEEEEEE
T ss_pred EEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCe-e---EEEEEccCCeEEc
Confidence 56778888888873232221 124899999999999999999763 2 4888999999999
Q ss_pred eeEEccC-----CceEEecCCcEeEEEEeeEEcCCC-eEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCC-C
Q 040962 64 HSSIGTG-----DDCIALLSGSTNINVTDVTCGPGH-GISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASP-Q 136 (247)
Q Consensus 64 n~~i~~~-----DD~i~i~s~~~nV~I~nc~~~~~~-gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~-~ 136 (247)
+++|.+. .|+|.+.+ ++||+|+||.+..++ +|+|++. -.||+++||++... +|+.|++...+ .
T Consensus 130 ~i~I~~~~~~~NtDGid~~~-s~nv~I~n~~i~~gDD~Iaiks~--------~~ni~v~n~~~~~g-hGisiGS~~~~~~ 199 (326)
T PF00295_consen 130 NITINNPANSPNTDGIDIDS-SKNVTIENCFIDNGDDCIAIKSG--------SGNILVENCTCSGG-HGISIGSEGSGGS 199 (326)
T ss_dssp SEEEEEGGGCTS--SEEEES-EEEEEEESEEEESSSESEEESSE--------ECEEEEESEEEESS-SEEEEEEESSSSE
T ss_pred ceEEEecCCCCCcceEEEEe-eeEEEEEEeecccccCccccccc--------ccceEEEeEEEecc-ccceeeeccCCcc
Confidence 9999863 48999998 999999999999875 7999874 23999999999765 68999987641 0
Q ss_pred CceEEcEEEEeEEEeCCCccEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEec---------C--CC
Q 040962 137 ANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCS---------K--TF 205 (247)
Q Consensus 137 ~g~i~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~---------~--~~ 205 (247)
...|+||+|+|+++.+..++++|+.. ..+.+.++||+|+||+++... .|+.+... + ..
T Consensus 200 ~~~i~nV~~~n~~i~~t~~gi~iKt~----------~~~~G~v~nI~f~ni~~~~v~-~pi~i~~~y~~~~~~~~~~~~~ 268 (326)
T PF00295_consen 200 QNDIRNVTFENCTIINTDNGIRIKTW----------PGGGGYVSNITFENITMENVK-YPIFIDQDYRDGGPCGKPPSGV 268 (326)
T ss_dssp --EEEEEEEEEEEEESESEEEEEEEE----------TTTSEEEEEEEEEEEEEEEES-EEEEEEEEECTTEESSCSSSSS
T ss_pred ccEEEeEEEEEEEeeccceEEEEEEe----------cccceEEeceEEEEEEecCCc-eEEEEEeccccccccCcccCCc
Confidence 13699999999999999999999984 134589999999999999875 78877531 1 13
Q ss_pred CEEcEEEEeEEEEecC
Q 040962 206 PCENIVLQDIYLVHNG 221 (247)
Q Consensus 206 ~~~ni~~~nv~i~~~~ 221 (247)
.++||+|+||+.+..+
T Consensus 269 ~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 269 SISNITFRNITGTSAG 284 (326)
T ss_dssp EEEEEEEEEEEEEEST
T ss_pred eEEEEEEEeeEEEecc
Confidence 5999999999999887
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.66 E-value=1.5e-14 Score=131.76 Aligned_cols=196 Identities=20% Similarity=0.228 Sum_probs=111.7
Q ss_pred EEccEEEEeeEEeCCCCcEEEEecee----cEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 6 FVTNSRISGITSVNSKNAHISLYGCH----KVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 6 ~~~nv~i~giti~n~~~~~i~~~~~~----nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
.+.++.++|+||.+||+|++.+..-+ ++.|+|.++.... ..++||+.+.. +-+|+|||+++.||+|.+.. +
T Consensus 327 g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly~--nS~i~dcF~h~nDD~iKlYh--S 401 (582)
T PF03718_consen 327 GGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDGIELYP--NSTIRDCFIHVNDDAIKLYH--S 401 (582)
T ss_dssp SSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT----B--T--T-EEEEEEEEESS-SEE--S--T
T ss_pred CcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCCccccC--CCeeeeeEEEecCchhheee--c
Confidence 46689999999999999999999544 5899999999865 48999999874 67889999999999998875 5
Q ss_pred eEEEEeeEEcCCC-e--EEEEeccccCCCCcEEEEEEEeeEEeCCc---------eeEEEEEe-c---C-C----CCceE
Q 040962 82 NINVTDVTCGPGH-G--ISVGSLGRYANERNVHGLAVRNCTFRGTT---------NGVRIKTW-A---S-P----QANVA 140 (247)
Q Consensus 82 nV~I~nc~~~~~~-g--i~igs~g~~~~~~~i~nI~v~ni~~~~~~---------~gi~ik~~-~---~-~----~~g~i 140 (247)
++.|+||++|..+ | +.+|.. ...++||+|+|+.+.... .+|.--+. . + . ..-.|
T Consensus 402 ~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti 476 (582)
T PF03718_consen 402 NVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTI 476 (582)
T ss_dssp TEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEE
T ss_pred CcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccce
Confidence 9999999999753 3 777753 467999999999998762 24333321 1 1 0 12358
Q ss_pred EcEEEEeEEEeCCCc-cEEEEeeeCCCCCCCCCccCceEEEeEEEEeEEEEccCCceEEEEecC------CCCEEcEEEE
Q 040962 141 SGFTFENIFMSNVEN-PIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCSK------TFPCENIVLQ 213 (247)
Q Consensus 141 ~nI~f~ni~~~~~~~-~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~g~~------~~~~~ni~~~ 213 (247)
++++|+|+++++.-. .+.|... +......|+|+.|+...+..-+.....+.... .....+|.|+
T Consensus 477 ~~~~~~nv~~EG~~~~l~ri~pl---------qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~ 547 (582)
T PF03718_consen 477 RNMTFSNVRCEGMCPCLFRIYPL---------QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIE 547 (582)
T ss_dssp EEEEEEEEEEECCE-ECEEE--S---------EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEE
T ss_pred eeEEEEeEEEecccceeEEEeec---------CCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEE
Confidence 999999999998743 4445431 00112334444444333222111222222211 2347899999
Q ss_pred eEEEEec
Q 040962 214 DIYLVHN 220 (247)
Q Consensus 214 nv~i~~~ 220 (247)
|.+|..+
T Consensus 548 N~tVgg~ 554 (582)
T PF03718_consen 548 NWTVGGE 554 (582)
T ss_dssp EEEETTE
T ss_pred eEEECCE
Confidence 9998544
No 17
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.8e-14 Score=133.64 Aligned_cols=154 Identities=14% Similarity=0.216 Sum_probs=130.0
Q ss_pred CCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCc----eEEecCCcEeEEEEeeEEcCC-Ce
Q 040962 21 KNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDD----CIALLSGSTNINVTDVTCGPG-HG 95 (247)
Q Consensus 21 ~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD----~i~i~s~~~nV~I~nc~~~~~-~g 95 (247)
...++.+..|+||++++++|.+++. .++++..|+|++++|..|.+.++ ++.+.+ |+||+|++|+|..+ +.
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 4467899999999999999999864 37999999999999999998654 999998 99999999999987 57
Q ss_pred EEEEeccccC---CCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEEeeeCCCCCCCCC
Q 040962 96 ISVGSLGRYA---NERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQK 172 (247)
Q Consensus 96 i~igs~g~~~---~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~ 172 (247)
|.++|..... -.+..+||+|+||.|...+.++.+.++. +|.|+||++||+.|.+...++.|+...
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~~~d~GLRikt~~--------- 379 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMDNTDRGLRIKTND--------- 379 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeeccCcceeeeeeec---------
Confidence 9998842211 1244799999999999888888998887 588999999999999999999999852
Q ss_pred ccCceEEEeEEEEeEEEEcc
Q 040962 173 ITSNVQIKDVTYRNIWGTSS 192 (247)
Q Consensus 173 ~~~~~~i~nI~~~ni~~~~~ 192 (247)
..++.++||+|+++.....
T Consensus 380 -~~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 380 -GRGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred -ccceeEEEEEEecccccCc
Confidence 2347899999999886654
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.14 E-value=3.2e-09 Score=94.02 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred EEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCC---CCCCCeeeecCcccEEEEeeEEccC-CceEEecCC
Q 040962 4 FNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQ---SPNTDGIKIGDSKGIKITHSSIGTG-DDCIALLSG 79 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~---~~n~DGidi~~s~nV~I~n~~i~~~-DD~i~i~s~ 79 (247)
+..+++|+|+++++.+++.+++.+..|++++|+++++.-... ....+||.+..|++++|+++.++.. |++|-++.
T Consensus 59 ~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~- 137 (314)
T TIGR03805 59 LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ- 137 (314)
T ss_pred EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-
Confidence 456899999999999999999999999999999999974321 1236799999999999999999875 45899986
Q ss_pred cEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeC
Q 040962 80 STNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSN 152 (247)
Q Consensus 80 ~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~ 152 (247)
++|++|++++++.. .||.+-. ..++.++|.++.+...|+.+-..++...-.-+++++++-++.+
T Consensus 138 s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 138 SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC
Confidence 89999999999875 4887742 3567888888888777888866554211223566666555543
No 19
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=99.13 E-value=5.4e-10 Score=94.11 Aligned_cols=123 Identities=21% Similarity=0.373 Sum_probs=92.2
Q ss_pred EEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCC----CCC--CCee------eecCcccEEEEeeEEccCC
Q 040962 4 FNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQ----SPN--TDGI------KIGDSKGIKITHSSIGTGD 71 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~----~~n--~DGi------di~~s~nV~I~n~~i~~~D 71 (247)
|+.|+++++++++|-|++. .++.|++|+++|+++.. ++ +.| -|++ .+++|+||.|+|+.+.+.|
T Consensus 94 fR~~~~i~L~nv~~~~A~E---t~W~c~~i~l~nv~~~g-dYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADE---TLWNCRGIKLKNVQANG-DYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred hhcccCcEEEeeEeCCCcc---cCEEeCCeEEEeEEEec-eEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 6789999999999988887 56788889999988843 32 111 2333 3457999999999999887
Q ss_pred ceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEe
Q 040962 72 DCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMS 151 (247)
Q Consensus 72 D~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~ 151 (247)
. + ..++||+|.|+.+.+. -+|- ..+||++.||++.+.+ + .-+++|++++|++|.
T Consensus 170 A---F-Wn~eNVtVyDS~i~GE---YLgW--------~SkNltliNC~I~g~Q---------p--LCY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 170 A---F-WNCENVTVYDSVINGE---YLGW--------NSKNLTLINCTIEGTQ---------P--LCYCDNLVLENCTMI 223 (277)
T ss_pred c---c-ccCCceEEEcceEeee---EEEE--------EcCCeEEEEeEEeccC---------c--cEeecceEEeCcEee
Confidence 3 2 3489999999998632 2322 2689999999998775 2 578899999999999
Q ss_pred CCCcc
Q 040962 152 NVENP 156 (247)
Q Consensus 152 ~~~~~ 156 (247)
+++.+
T Consensus 224 ~tdla 228 (277)
T PF12541_consen 224 DTDLA 228 (277)
T ss_pred cceee
Confidence 76543
No 20
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.83 E-value=4.1e-08 Score=77.00 Aligned_cols=139 Identities=22% Similarity=0.329 Sum_probs=97.0
Q ss_pred CeEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCc
Q 040962 1 SMVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGS 80 (247)
Q Consensus 1 ~i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~ 80 (247)
+|.+....+++|++.+|.+...+++++..+..++|++++|... ..|+.+....++++++|.+.....++.+. ++
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~~-----~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISNG-----GYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEESS-----TTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEECC-----CcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 4677888899999999999999999999999999999999992 34899988899999999999877677777 47
Q ss_pred EeEEEEeeEEcCC--CeEEEEeccccCCCCcEEEEEEEeeEEeCCc-eeEEEEEecCCCCceEEcEEEEeEEEeCCC-cc
Q 040962 81 TNINVTDVTCGPG--HGISVGSLGRYANERNVHGLAVRNCTFRGTT-NGVRIKTWASPQANVASGFTFENIFMSNVE-NP 156 (247)
Q Consensus 81 ~nV~I~nc~~~~~--~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~-~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~-~~ 156 (247)
.+++|++|.+... .||.+.. ...+++|++++|.+.. .|+.+.... -.++++++.++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 8999999999874 3777742 2467899999999876 677776432 236777777777654 44
Q ss_pred EEE
Q 040962 157 IVI 159 (247)
Q Consensus 157 i~i 159 (247)
+++
T Consensus 142 i~~ 144 (158)
T PF13229_consen 142 IYL 144 (158)
T ss_dssp EE-
T ss_pred EEE
Confidence 443
No 21
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.74 E-value=2.4e-07 Score=85.36 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=115.1
Q ss_pred eEEE-EEccEEEEeeEEeCCCC----------------------------cEEEEeceecEEEEeEEEEcCCCCCCCCee
Q 040962 2 MVFN-FVTNSRISGITSVNSKN----------------------------AHISLYGCHKVSIDNIKITAPYQSPNTDGI 52 (247)
Q Consensus 2 i~~~-~~~nv~i~giti~n~~~----------------------------~~i~~~~~~nv~i~n~~I~~~~~~~n~DGi 52 (247)
+++. .+.++++.|--++.... |+.....++++.+++++|..++. + .+
T Consensus 271 f~~~~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~--~--Sm 346 (582)
T PF03718_consen 271 FEYTDTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPF--H--SM 346 (582)
T ss_dssp EEE---SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-----SE
T ss_pred EEEccCCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCc--c--eE
Confidence 4444 67888887765553322 34456678899999999999864 2 46
Q ss_pred eecCcc----cEEEEeeEEcc----CCceEEecCCcEeEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCC
Q 040962 53 KIGDSK----GIKITHSSIGT----GDDCIALLSGSTNINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGT 123 (247)
Q Consensus 53 di~~s~----nV~I~n~~i~~----~DD~i~i~s~~~nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~ 123 (247)
++.+.+ +..|+|.++.- .-|++.+.. |=+|+||.++.. ++|++- -+++.++|++++..
T Consensus 347 ~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD~iKlY----------hS~v~v~~~ViWk~ 413 (582)
T PF03718_consen 347 DLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDDAIKLY----------HSNVSVSNTVIWKN 413 (582)
T ss_dssp EEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-SEE------------STTEEEEEEEEEE-
T ss_pred EecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCchhhee----------ecCcceeeeEEEec
Confidence 665433 58889988774 468999987 457899999874 689873 27899999999998
Q ss_pred ceeEEEEEecCCCCceEEcEEEEeEEEeCCC---------ccEEEE-eeeCCCCCCCCCccCceEEEeEEEEeEEEEccC
Q 040962 124 TNGVRIKTWASPQANVASGFTFENIFMSNVE---------NPIVID-QMYCPHGSCNQKITSNVQIKDVTYRNIWGTSST 193 (247)
Q Consensus 124 ~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~---------~~i~i~-~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~ 193 (247)
.+|.-|...+. ...++||.|+|+.+-..+ .+|.-. ..|.+... ...+....+|++++|+|++.++..
T Consensus 414 ~Ngpiiq~GW~--pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s-~~~adp~~ti~~~~~~nv~~EG~~ 490 (582)
T PF03718_consen 414 ENGPIIQWGWT--PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMAS-TKTADPSTTIRNMTFSNVRCEGMC 490 (582)
T ss_dssp SSS-SEE--CS-----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SS-S--BEEEEEEEEEEEEEEEEECCE
T ss_pred CCCCeEEeecc--ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccC-CCCCCcccceeeEEEEeEEEeccc
Confidence 87766665443 567999999999997642 223222 23522111 111223458999999999998864
Q ss_pred CceEEEEecCCCCEEcEEEEeEEEEecC
Q 040962 194 KVAVNFQCSKTFPCENIVLQDIYLVHNG 221 (247)
Q Consensus 194 ~~~~~i~g~~~~~~~ni~~~nv~i~~~~ 221 (247)
...+.|. |-...+||.++|+.+....
T Consensus 491 ~~l~ri~--plqn~~nl~ikN~~~~~w~ 516 (582)
T PF03718_consen 491 PCLFRIY--PLQNYDNLVIKNVHFESWN 516 (582)
T ss_dssp -ECEEE----SEEEEEEEEEEEEECEET
T ss_pred ceeEEEe--ecCCCcceEEEEeeccccc
Confidence 4444444 4445678888999887443
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.68 E-value=1.9e-07 Score=78.96 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=77.6
Q ss_pred EEEEccEEEEeeEEeCCCCc----------------EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEE
Q 040962 4 FNFVTNSRISGITSVNSKNA----------------HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSI 67 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~~----------------~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i 67 (247)
+..|++++++++++ ++-.+ .-.|.+|+||.|+|.++.+-+ + ++.|+||+|+|+.|
T Consensus 114 ~W~c~~i~l~nv~~-~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD------A--FWn~eNVtVyDS~i 184 (277)
T PF12541_consen 114 LWNCRGIKLKNVQA-NGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD------A--FWNCENVTVYDSVI 184 (277)
T ss_pred CEEeCCeEEEeEEE-eceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc------c--cccCCceEEEcceE
Confidence 56788888888887 44332 135677888888888888853 2 46899999999999
Q ss_pred ccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEE
Q 040962 68 GTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRI 129 (247)
Q Consensus 68 ~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~i 129 (247)
.. =-+...++|+++-||++.+..|+. .++|++.+||+|.++..++.-
T Consensus 185 ~G----EYLgW~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 185 NG----EYLGWNSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred ee----eEEEEEcCCeEEEEeEEeccCccE-----------eecceEEeCcEeecceeeeee
Confidence 73 345556899999999998766653 489999999999988755543
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.61 E-value=6.4e-06 Score=73.04 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=113.3
Q ss_pred CeEEEEEccEEEEeeEEeC-------CCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCce
Q 040962 1 SMVFNFVTNSRISGITSVN-------SKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDC 73 (247)
Q Consensus 1 ~i~~~~~~nv~i~giti~n-------~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~ 73 (247)
+|.+..|++++|+++++.. ...+++.+..|++++|++.++....+ +||-+..|++++|+++.+.....+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d----~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASD----AGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCc----ccEEECCCCCeEEECCEEccCcce
Confidence 3677889999999999962 34689999999999999999988543 499999999999999999998889
Q ss_pred EEecCCcEeEEEEeeEEcC-CCeEEEEeccccCCCCcEEEEEEEeeEEeCCce-eE-----EEEEecCCCCceE----Ec
Q 040962 74 IALLSGSTNINVTDVTCGP-GHGISVGSLGRYANERNVHGLAVRNCTFRGTTN-GV-----RIKTWASPQANVA----SG 142 (247)
Q Consensus 74 i~i~s~~~nV~I~nc~~~~-~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~-gi-----~ik~~~~~~~g~i----~n 142 (247)
|-+.. +.++.|++.++.. ..|+.+.+.... .....++++|++-++.+... .+ .+...+. ..|.+ ++
T Consensus 155 I~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~-g~Gi~i~~~~~ 231 (314)
T TIGR03805 155 IEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPA-GTGVVVMANRD 231 (314)
T ss_pred EEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcccCCceecCCC-CcEEEEEcccc
Confidence 99986 7899999999876 458888554211 11245788999888886421 11 1111121 13444 78
Q ss_pred EEEEeEEEeCCCc-cEEEE
Q 040962 143 FTFENIFMSNVEN-PIVID 160 (247)
Q Consensus 143 I~f~ni~~~~~~~-~i~i~ 160 (247)
+.++|-++++... ++.+.
T Consensus 232 v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 232 VEIFGNVISNNDTANVLIS 250 (314)
T ss_pred eEEECCEEeCCcceeEEEE
Confidence 8999888888764 45553
No 24
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1.5e-05 Score=68.74 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=91.9
Q ss_pred eEEEEEccEEEEeeEEe-CCCCcEEEEeceecEEEEeEEEEcCC-CCCCCCeeee-cCcccEEEEeeEEcc---------
Q 040962 2 MVFNFVTNSRISGITSV-NSKNAHISLYGCHKVSIDNIKITAPY-QSPNTDGIKI-GDSKGIKITHSSIGT--------- 69 (247)
Q Consensus 2 i~~~~~~nv~i~giti~-n~~~~~i~~~~~~nv~i~n~~I~~~~-~~~n~DGidi-~~s~nV~I~n~~i~~--------- 69 (247)
+.+.-|.|.+|.|+--. .--.|++.+.+..||.|+|++|.... +-++-|+|.+ .+++|+.|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 45667777777776521 11358999999999999999999854 2244589999 789999999999987
Q ss_pred CCceEEecCCcEeEEEEeeEEcCCC-eEEEEeccccCCCCcEEEEEEEeeEEeCC
Q 040962 70 GDDCIALLSGSTNINVTDVTCGPGH-GISVGSLGRYANERNVHGLAVRNCTFRGT 123 (247)
Q Consensus 70 ~DD~i~i~s~~~nV~I~nc~~~~~~-gi~igs~g~~~~~~~i~nI~v~ni~~~~~ 123 (247)
+|..+.+|-++..|+|+++.+...+ ++-+|+.-.......-.+|++.++.|.+.
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 4677889988999999999998754 77777653211223456788888888774
No 25
>smart00656 Amb_all Amb_all domain.
Probab=98.46 E-value=2.4e-06 Score=70.42 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=78.3
Q ss_pred cEEEEeceecEEEEeEEEEcCCC--CCCCCeeeecCcccEEEEeeEEccC----------CceEEecCCcEeEEEEeeEE
Q 040962 23 AHISLYGCHKVSIDNIKITAPYQ--SPNTDGIKIGDSKGIKITHSSIGTG----------DDCIALLSGSTNINVTDVTC 90 (247)
Q Consensus 23 ~~i~~~~~~nv~i~n~~I~~~~~--~~n~DGidi~~s~nV~I~n~~i~~~----------DD~i~i~s~~~nV~I~nc~~ 90 (247)
+.|.+..++||.|+|++|..... ..+.|+|.+.++++|.|++|.+..+ |..+.++.++.+|+|++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 67888889999999999999643 2478999999999999999999987 56678888899999999999
Q ss_pred cCCC-eEEEEeccccCCCCcEEEEEEEeeEEeCC
Q 040962 91 GPGH-GISVGSLGRYANERNVHGLAVRNCTFRGT 123 (247)
Q Consensus 91 ~~~~-gi~igs~g~~~~~~~i~nI~v~ni~~~~~ 123 (247)
..-+ +.-+|+.-.. ......+|++.++.+.+.
T Consensus 112 ~~h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 7643 6777763111 112245788888888664
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.43 E-value=3e-06 Score=66.29 Aligned_cols=117 Identities=25% Similarity=0.375 Sum_probs=82.5
Q ss_pred EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCC-eEEEEecc
Q 040962 24 HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGH-GISVGSLG 102 (247)
Q Consensus 24 ~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~-gi~igs~g 102 (247)
++.+..+.+++|++++|... ..+|+.+..+..++|++|.|..+..++.+.. ..++.+++|.+.... |+.+.
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~----~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~~--- 73 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN----GGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYVS--- 73 (158)
T ss_dssp CEEETTCEC-EEESEEEESS----SSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEECC---
T ss_pred EEEEECCcCeEEeeeEEEeC----CCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEEE---
Confidence 57888899999999999995 3468999998889999999999888898887 589999999998765 45442
Q ss_pred ccCCCCcEEEEEEEeeEEeCCce-eEEEEEecCCCCceEEcEEEEeEEEeCCC-ccEEEEe
Q 040962 103 RYANERNVHGLAVRNCTFRGTTN-GVRIKTWASPQANVASGFTFENIFMSNVE-NPIVIDQ 161 (247)
Q Consensus 103 ~~~~~~~i~nI~v~ni~~~~~~~-gi~ik~~~~~~~g~i~nI~f~ni~~~~~~-~~i~i~~ 161 (247)
...+++++++++.+... |+.++. .-+++++++.++.+.. .++++..
T Consensus 74 ------~~~~~~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 74 ------GSSNITIENNRIENNGDYGIYISN-------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp ------S-CS-EEES-EEECSSS-SCE-TC-------EECS-EEES-EEECCTTSSCEEEE
T ss_pred ------ecCCceecCcEEEcCCCccEEEec-------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 35788899999988765 777742 2356888888888776 5666654
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.38 E-value=1e-05 Score=73.77 Aligned_cols=30 Identities=17% Similarity=0.015 Sum_probs=24.6
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEecee
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCH 31 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~ 31 (247)
|++..|++++|++.+|.+++.|++.+..|+
T Consensus 138 I~v~~a~~v~Iedn~L~gsg~FGI~L~~~~ 167 (455)
T TIGR03808 138 IHCQGGRDVRITDCEITGSGGNGIWLETVS 167 (455)
T ss_pred EEEccCCceEEEeeEEEcCCcceEEEEcCc
Confidence 567778888888888888888888888887
No 28
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.36 E-value=2.7e-05 Score=65.94 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=101.1
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
|++..+++..|++.++.+.. .++.+..+.+++|++.+|.... .||.+..+++++|+++.+.....+|.+.. +.
T Consensus 16 i~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~~-----~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s~ 88 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNNR-----YGIHLMGSSNNTIENNTISNNGYGIYLMG-SS 88 (236)
T ss_pred EEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECCC-----eEEEEEccCCCEEEeEEEEccCCCEEEEc-CC
Confidence 67788888888888887655 4668889999999999988863 48999999999999999988778999988 44
Q ss_pred eEEEEeeEEcCC-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCC-CccEE
Q 040962 82 NINVTDVTCGPG-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNV-ENPIV 158 (247)
Q Consensus 82 nV~I~nc~~~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~-~~~i~ 158 (247)
+.+|+++++... .||.+.. ..+.++++.++.+...||.+... .+.++++-++.+. ..+|+
T Consensus 89 ~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 89 NNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 559999998864 5787753 24477888888877778888532 3445555566655 56666
No 29
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.30 E-value=8.5e-06 Score=67.65 Aligned_cols=115 Identities=24% Similarity=0.379 Sum_probs=78.1
Q ss_pred EEEccEEEEee----EEeCCCCcEEEEe-ceecEEEEeEEEEcC-----------CCCCCCCeeeecCcccEEEEeeEEc
Q 040962 5 NFVTNSRISGI----TSVNSKNAHISLY-GCHKVSIDNIKITAP-----------YQSPNTDGIKIGDSKGIKITHSSIG 68 (247)
Q Consensus 5 ~~~~nv~i~gi----ti~n~~~~~i~~~-~~~nv~i~n~~I~~~-----------~~~~n~DGidi~~s~nV~I~n~~i~ 68 (247)
.-..|-+|.|+ +|.+ +++.+. .++||.|+|++|... .+....|++.+..++||.|++|.+.
T Consensus 18 ~v~snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs 94 (200)
T PF00544_consen 18 SVGSNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFS 94 (200)
T ss_dssp EEESSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEE
T ss_pred EECCCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEe
Confidence 33466777773 2322 567776 899999999999982 1235689999999999999999998
Q ss_pred cC---------CceEEecCCcEeEEEEeeEEcCCC-eEEEEeccccCCCCcEEEEEEEeeEEeCC
Q 040962 69 TG---------DDCIALLSGSTNINVTDVTCGPGH-GISVGSLGRYANERNVHGLAVRNCTFRGT 123 (247)
Q Consensus 69 ~~---------DD~i~i~s~~~nV~I~nc~~~~~~-gi~igs~g~~~~~~~i~nI~v~ni~~~~~ 123 (247)
.+ |..+.++.++.+|+|++|.|...+ +.-+|+......... .+|++.+..+.+.
T Consensus 95 ~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 95 WGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp ETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred ccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 66 566899988999999999998642 455665321111223 7888888888653
No 30
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.28 E-value=3.3e-05 Score=70.49 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=90.2
Q ss_pred EEEEccEEEEeeEEeCCC------CcEEEEeceecEEEEeEEEEcCC-CCCCCCeeeecCcccEEEEeeEE-ccCCceEE
Q 040962 4 FNFVTNSRISGITSVNSK------NAHISLYGCHKVSIDNIKITAPY-QSPNTDGIKIGDSKGIKITHSSI-GTGDDCIA 75 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~------~~~i~~~~~~nv~i~n~~I~~~~-~~~n~DGidi~~s~nV~I~n~~i-~~~DD~i~ 75 (247)
-...++|+|+|++|.++. ...+++..|++++|++++|.++. + ||.+..|+ ..|.+..| ...+..|.
T Consensus 111 ai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~F-----GI~L~~~~-~~I~~N~I~g~~~~~I~ 184 (455)
T TIGR03808 111 SEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGN-----GIWLETVS-GDISGNTITQIAVTAIV 184 (455)
T ss_pred EecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcc-----eEEEEcCc-ceEecceEeccccceEE
Confidence 355789999999998876 34789999999999999999974 4 78888888 44444444 44556666
Q ss_pred ecCCcEeEEEEeeEEcCC--CeEEEEec------------------------cccCCC---CcEEEEEEEeeEEeCCc-e
Q 040962 76 LLSGSTNINVTDVTCGPG--HGISVGSL------------------------GRYANE---RNVHGLAVRNCTFRGTT-N 125 (247)
Q Consensus 76 i~s~~~nV~I~nc~~~~~--~gi~igs~------------------------g~~~~~---~~i~nI~v~ni~~~~~~-~ 125 (247)
+.. +++++|++-++... .||.+.-. ++++.. -...+++|++.++.++. .
T Consensus 185 lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~d 263 (455)
T TIGR03808 185 SFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYS 263 (455)
T ss_pred Eec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccc
Confidence 554 67777777777653 35555422 111110 01346677777777766 6
Q ss_pred eEEEEEecCCCCceEEcEEEEeEEEeCCCc-cEEE
Q 040962 126 GVRIKTWASPQANVASGFTFENIFMSNVEN-PIVI 159 (247)
Q Consensus 126 gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~-~i~i 159 (247)
|+++.+. +|++|++-+++++.+ +++.
T Consensus 264 gI~~nss--------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 264 AVRGNSA--------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred eEEEEcc--------cCcEEECcEeeeeeeeEEEE
Confidence 7776542 344555555555554 4443
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.18 E-value=7.3e-05 Score=63.33 Aligned_cols=112 Identities=24% Similarity=0.264 Sum_probs=95.5
Q ss_pred eEEEEEccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcE
Q 040962 2 MVFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGST 81 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~ 81 (247)
+.+..+.+++|++.++.+. .+++++..|++++|++..+.... .||.+..+.+.+|++..+.....+|.+.. +.
T Consensus 38 i~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~-----~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s~ 110 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNG-----YGIYLMGSSNNTISNNTISNNGYGIYLYG-SS 110 (236)
T ss_pred EEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccC-----CCEEEEcCCCcEEECCEecCCCceEEEee-CC
Confidence 5688999999999999998 88999999999999999999953 59999998888999999998877999887 67
Q ss_pred eEEEEeeEEcC-CCeEEEEeccccCCCCcEEEEEEEeeEEeCC-ceeEEE
Q 040962 82 NINVTDVTCGP-GHGISVGSLGRYANERNVHGLAVRNCTFRGT-TNGVRI 129 (247)
Q Consensus 82 nV~I~nc~~~~-~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~-~~gi~i 129 (247)
+.+|++.++.. ..||.|... .+.++++.++.+. ..||.+
T Consensus 111 ~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 111 NNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred ceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 88899999875 358888532 6777888888877 778884
No 32
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.97 E-value=0.00083 Score=55.72 Aligned_cols=106 Identities=28% Similarity=0.502 Sum_probs=62.3
Q ss_pred EEEEeEEEEcCCCCC--CCCeeeecCcccEEEEeeEEcc-CCceEEecCC-------------------cEeEEEEeeEE
Q 040962 33 VSIDNIKITAPYQSP--NTDGIKIGDSKGIKITHSSIGT-GDDCIALLSG-------------------STNINVTDVTC 90 (247)
Q Consensus 33 v~i~n~~I~~~~~~~--n~DGidi~~s~nV~I~n~~i~~-~DD~i~i~s~-------------------~~nV~I~nc~~ 90 (247)
+.++|++|....... ...|+++..+++++|+||.+.. +.+++.+... +.++.+.+|.+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccc
Confidence 459999999876433 2368889899999999998875 3566666521 11223333333
Q ss_pred cCC-CeEEEEeccccCCCCcEEEEEEEeeEEeC-CceeEEEEEecCCCCceEEcEEEEeEEEeCCCcc
Q 040962 91 GPG-HGISVGSLGRYANERNVHGLAVRNCTFRG-TTNGVRIKTWASPQANVASGFTFENIFMSNVENP 156 (247)
Q Consensus 91 ~~~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~-~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~ 156 (247)
..+ .|+..+ -+++.++|+.+.+ ...|+.+.... ++.++|++++++..+
T Consensus 174 ~~~~~g~~~~----------~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~~g 223 (225)
T PF12708_consen 174 NGGDNGIILG----------NNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCDDG 223 (225)
T ss_dssp ESSSCSEECE----------EEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSSEE
T ss_pred cCCCceeEee----------cceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCccC
Confidence 332 232221 1577777777776 55666665321 256666666665544
No 33
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.84 E-value=0.00029 Score=58.52 Aligned_cols=107 Identities=24% Similarity=0.391 Sum_probs=71.2
Q ss_pred EEEEeeEEeCCC------CcEEEEeceecEEEEeEEEEcCCCC----CC-----------CCeeeecC-cccEEEEeeEE
Q 040962 10 SRISGITSVNSK------NAHISLYGCHKVSIDNIKITAPYQS----PN-----------TDGIKIGD-SKGIKITHSSI 67 (247)
Q Consensus 10 v~i~giti~n~~------~~~i~~~~~~nv~i~n~~I~~~~~~----~n-----------~DGidi~~-s~nV~I~n~~i 67 (247)
+.|++++|.... .-++++..++++.|+|+++.+..+. .. ..++.+.. +.++.+.++.+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccc
Confidence 347777776443 2458888899999999999875320 00 01333322 34466688888
Q ss_pred ccCCceEEecCCcEeEEEEeeEEcC-C-CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeE
Q 040962 68 GTGDDCIALLSGSTNINVTDVTCGP-G-HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGV 127 (247)
Q Consensus 68 ~~~DD~i~i~s~~~nV~I~nc~~~~-~-~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi 127 (247)
..+++++.. +.+++.|+||++.. . .||.+-.. .+++++|++|.+...|+
T Consensus 174 ~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i~~~---------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 174 NGGDNGIIL--GNNNITISNNTFEGNCGNGINIEGG---------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp ESSSCSEEC--EEEEEEEECEEEESSSSESEEEEEC---------SEEEEEEEEEESSSEEE
T ss_pred cCCCceeEe--ecceEEEEeEEECCccceeEEEECC---------eEEEEEeEEEECCccCc
Confidence 888888433 35899999999986 3 58888653 33778888887777665
No 34
>smart00656 Amb_all Amb_all domain.
Probab=97.64 E-value=0.0043 Score=51.09 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=81.5
Q ss_pred eEEEEEccEEEEeeEEeCCCC------cEEEEeceecEEEEeEEEEcCCC----CCCCCee-eec-CcccEEEEeeEEcc
Q 040962 2 MVFNFVTNSRISGITSVNSKN------AHISLYGCHKVSIDNIKITAPYQ----SPNTDGI-KIG-DSKGIKITHSSIGT 69 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~~------~~i~~~~~~nv~i~n~~I~~~~~----~~n~DGi-di~-~s~nV~I~n~~i~~ 69 (247)
|++..++||.|++|+|++... .++.+..+++|.|+++++..... ..-.||. ++. .+++|+|.+|.+..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 567779999999999998754 58999999999999999998621 0113443 543 57999999999987
Q ss_pred CCceEEecCCcE-------eEEEEeeEEcCC--CeEEEEeccccCCCCcEEEEEEEeeEEeCCc
Q 040962 70 GDDCIALLSGST-------NINVTDVTCGPG--HGISVGSLGRYANERNVHGLAVRNCTFRGTT 124 (247)
Q Consensus 70 ~DD~i~i~s~~~-------nV~I~nc~~~~~--~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~ 124 (247)
.+-+.-++++.+ +|++.++.+... +.-++. .+ .+++.|..+.+..
T Consensus 114 h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~ 167 (190)
T smart00656 114 HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWT 167 (190)
T ss_pred CCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcc
Confidence 666666666422 699999998753 222221 11 5777777777754
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.016 Score=50.44 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=76.3
Q ss_pred eEEEEEccEEEEeeEEeCCC-----CcEEEE-eceecEEEEeEEEEcCCC---CCCCCe-eeec-CcccEEEEeeEEccC
Q 040962 2 MVFNFVTNSRISGITSVNSK-----NAHISL-YGCHKVSIDNIKITAPYQ---SPNTDG-IKIG-DSKGIKITHSSIGTG 70 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~-----~~~i~~-~~~~nv~i~n~~I~~~~~---~~n~DG-idi~-~s~nV~I~n~~i~~~ 70 (247)
|.+.+..||.|++|+|...+ ...|.+ ...+|+.|+++++..... .-..|| +|+. ++.+|+|..+++...
T Consensus 119 l~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh 198 (345)
T COG3866 119 LKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDH 198 (345)
T ss_pred EEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecC
Confidence 56777899999999998777 457888 789999999999999432 113444 4564 678999999999988
Q ss_pred CceEEecCC--------cEeEEEEeeEEcCC--C--eEEEEec
Q 040962 71 DDCIALLSG--------STNINVTDVTCGPG--H--GISVGSL 101 (247)
Q Consensus 71 DD~i~i~s~--------~~nV~I~nc~~~~~--~--gi~igs~ 101 (247)
|-..-+++. -.+|++.++.|... + -+++|..
T Consensus 199 ~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~v 241 (345)
T COG3866 199 DKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMV 241 (345)
T ss_pred CeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEE
Confidence 777666552 25699999999863 3 3777764
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.49 E-value=0.015 Score=48.21 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=61.7
Q ss_pred EEE-EEccEEEEeeEEeCC---------------CCcEEEEeceecEEEEeEEEEcCCCC---CCCCe-eeec-CcccEE
Q 040962 3 VFN-FVTNSRISGITSVNS---------------KNAHISLYGCHKVSIDNIKITAPYQS---PNTDG-IKIG-DSKGIK 61 (247)
Q Consensus 3 ~~~-~~~nv~i~giti~n~---------------~~~~i~~~~~~nv~i~n~~I~~~~~~---~n~DG-idi~-~s~nV~ 61 (247)
.+. +++||.|++|+|... ...++.+..+++|.|+++++....+. ...|| +|+. .+++|+
T Consensus 40 ~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vT 119 (200)
T PF00544_consen 40 RIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVT 119 (200)
T ss_dssp EEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEE
T ss_pred EEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEE
Confidence 344 789999999999982 34579999999999999999997221 11444 5764 689999
Q ss_pred EEeeEEccCCceEEecCC-------cEeEEEEeeEEcC
Q 040962 62 ITHSSIGTGDDCIALLSG-------STNINVTDVTCGP 92 (247)
Q Consensus 62 I~n~~i~~~DD~i~i~s~-------~~nV~I~nc~~~~ 92 (247)
|.+|.+...+.+..+++. ..+|++..+.+..
T Consensus 120 iS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~ 157 (200)
T PF00544_consen 120 ISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFAN 157 (200)
T ss_dssp EES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEE
T ss_pred EEchhccccccccccCCCCCccccCCceEEEEeEEECc
Confidence 999999875444434331 2689999998864
No 37
>PLN02773 pectinesterase
Probab=95.29 E-value=0.76 Score=40.85 Aligned_cols=113 Identities=11% Similarity=0.138 Sum_probs=73.3
Q ss_pred eceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccC
Q 040962 28 YGCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYA 105 (247)
Q Consensus 28 ~~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~ 105 (247)
...+++.++||+|.|.... .-.-++.+. .+.+.+.+|.|....|-+-.+. ..-.++||++.+.-.+=+|.
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~----- 170 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN----- 170 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec-----
Confidence 3568899999999996421 122234444 4889999999998888877664 36888999988776666664
Q ss_pred CCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCCC
Q 040962 106 NERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVE 154 (247)
Q Consensus 106 ~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~~ 154 (247)
-...|++|.+.....| .|..........-....|.|+++++..
T Consensus 171 -----g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 -----STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -----cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCC
Confidence 3468888888765444 343221100111134688999988753
No 38
>PLN02480 Probable pectinesterase
Probab=95.27 E-value=0.74 Score=41.40 Aligned_cols=112 Identities=10% Similarity=0.055 Sum_probs=63.2
Q ss_pred ceecEEEEeEEEEcCCCC-----CCCCeeee-cCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEecc
Q 040962 29 GCHKVSIDNIKITAPYQS-----PNTDGIKI-GDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLG 102 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~-----~n~DGidi-~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g 102 (247)
..++++++||+|.|.... ...-++-+ ...+++.++||.|....|-+-... ..-.++||++.+.-.+=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 457888888888886310 11224443 245788888888887777665443 35677888877654454442
Q ss_pred ccCCCCcEEEEEEEeeEEeCCce-----eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 103 RYANERNVHGLAVRNCTFRGTTN-----GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 103 ~~~~~~~i~nI~v~ni~~~~~~~-----gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||++..... .=.|..+... ...-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~-~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGSITAHNRE-SEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceEEEcCCCC-CCCCCEEEEECCEEccc
Confidence 345677777764321 0123222110 11123456777777753
No 39
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.45 E-value=3 Score=37.24 Aligned_cols=84 Identities=20% Similarity=0.189 Sum_probs=62.6
Q ss_pred EccEEEEeeEEeCCCC-----------------------------cEEEEeceecEEEEeEEEEcCCCC---CCCCeeee
Q 040962 7 VTNSRISGITSVNSKN-----------------------------AHISLYGCHKVSIDNIKITAPYQS---PNTDGIKI 54 (247)
Q Consensus 7 ~~nv~i~giti~n~~~-----------------------------~~i~~~~~~nv~i~n~~I~~~~~~---~n~DGidi 54 (247)
..++.|+|++++++.. +++.+..+.++.+++.+|....+. .-..||.+
T Consensus 76 aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~v 155 (408)
T COG3420 76 APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYV 155 (408)
T ss_pred CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEE
Confidence 4678888888886542 257777888899999988885542 34668999
Q ss_pred cCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEc
Q 040962 55 GDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCG 91 (247)
Q Consensus 55 ~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~ 91 (247)
..++.+.|..-.|+-+.|||-.+. +++-.|++-.+.
T Consensus 156 yNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~ 191 (408)
T COG3420 156 YNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFR 191 (408)
T ss_pred EcCCCcEEEcCccccccceEEEcc-cccceecccchh
Confidence 999999999999999999988876 445555544443
No 40
>PLN02773 pectinesterase
Probab=94.23 E-value=1.7 Score=38.65 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=89.2
Q ss_pred EEEEccEEEEeeEEeCCCC----c--EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEec
Q 040962 4 FNFVTNSRISGITSVNSKN----A--HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALL 77 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~----~--~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~ 77 (247)
+...+++..++|||.|... - .+.+ ..+.+.+.+|++....|. +-... -.-.+++|+|.-.=|-| .+
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~QDT-----L~~~~-gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQDT-----LYLHY-GKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecccce-----eEeCC-CCEEEEeeEEeecccEE-ee
Confidence 3467899999999999843 2 3444 468999999999997663 32222 36899999999765655 34
Q ss_pred CCcEeEEEEeeEEcCC-Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCce--eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 78 SGSTNINVTDVTCGPG-HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTN--GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 78 s~~~nV~I~nc~~~~~-~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~--gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
. -...+++|.+... .| |.--+. .....-.-..|.||++.+... -.+++= .-+.-..+.|.|..|...
T Consensus 170 ~--g~a~Fe~c~i~s~~~g~ITA~~r---~~~~~~~GfvF~~c~it~~~~~~~~yLGR----pW~~~a~vVf~~t~l~~~ 240 (317)
T PLN02773 170 N--STALLEHCHIHCKSAGFITAQSR---KSSQESTGYVFLRCVITGNGGSGYMYLGR----PWGPFGRVVFAYTYMDAC 240 (317)
T ss_pred c--cEEEEEeeEEEEccCcEEECCCC---CCCCCCceEEEEccEEecCCCCcceeecC----CCCCCceEEEEecccCCe
Confidence 3 4699999999753 34 322111 011223568999999987542 233431 123456889999998874
Q ss_pred Ccc
Q 040962 154 ENP 156 (247)
Q Consensus 154 ~~~ 156 (247)
=.|
T Consensus 241 I~p 243 (317)
T PLN02773 241 IRP 243 (317)
T ss_pred Ecc
Confidence 333
No 41
>PLN02665 pectinesterase family protein
Probab=93.32 E-value=4.4 Score=36.78 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=66.4
Q ss_pred EEeceecEEEEeEEEEcCCCC-------CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEE
Q 040962 26 SLYGCHKVSIDNIKITAPYQS-------PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISV 98 (247)
Q Consensus 26 ~~~~~~nv~i~n~~I~~~~~~-------~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~i 98 (247)
....++++..+|++|.|.... .-.-++.+. .+.+.+.||.+....|-+-...+ .-.++||++.+.-.+=+
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~QDTL~~~~g--r~yf~~CyIeG~VDFIF 225 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQDTLCDDKG--RHFFKDCYIEGTVDFIF 225 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceeccccceeEeCCC--CEEEEeeEEeeccceec
Confidence 344568888888888885321 112233443 47788888888887777665543 56788888876655555
Q ss_pred EeccccCCCCcEEEEEEEeeEEeCCcee--EEEEEecCCCCceEEcEEEEeEEEeCCC
Q 040962 99 GSLGRYANERNVHGLAVRNCTFRGTTNG--VRIKTWASPQANVASGFTFENIFMSNVE 154 (247)
Q Consensus 99 gs~g~~~~~~~i~nI~v~ni~~~~~~~g--i~ik~~~~~~~g~i~nI~f~ni~~~~~~ 154 (247)
|. -...|++|++.....+ -.|..........-....|.|+++++..
T Consensus 226 G~----------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 226 GS----------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred cc----------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 43 2346777777654332 2232221100111234467788877643
No 42
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=92.69 E-value=3.5 Score=37.51 Aligned_cols=57 Identities=16% Similarity=0.009 Sum_probs=25.8
Q ss_pred ecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcC
Q 040962 31 HKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGP 92 (247)
Q Consensus 31 ~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~ 92 (247)
.+|++.|+.+...+. .-|+-+.+..++++.+|.+..-. +.++.. .....|+.|+|.+
T Consensus 121 ~~VtF~ni~F~~~~~---~~g~~f~~~t~~~~hgC~F~gf~-g~cl~~-~~~~~VrGC~F~~ 177 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDT---FSGVVFHANTNTLFHGCSFFGFH-GTCLES-WAGGEVRGCTFYG 177 (386)
T ss_pred eeeEEEEEEEecCCc---cceeEEEecceEEEEeeEEecCc-ceeEEE-cCCcEEeeeEEEE
Confidence 455555555555431 12444555555555555555321 222332 1244555555543
No 43
>PLN02665 pectinesterase family protein
Probab=92.43 E-value=4.5 Score=36.71 Aligned_cols=133 Identities=16% Similarity=0.094 Sum_probs=85.0
Q ss_pred EEEEccEEEEeeEEeCCCC---------c--EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCc
Q 040962 4 FNFVTNSRISGITSVNSKN---------A--HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDD 72 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~---------~--~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 72 (247)
....+++..++|+|.|... . .+.+ ..+...+.||++....|. +-.. .-.-..++|+|.-.=|
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~QDT-----L~~~-~gr~yf~~CyIeG~VD 222 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQDT-----LCDD-KGRHFFKDCYIEGTVD 222 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceeccccce-----eEeC-CCCEEEEeeEEeeccc
Confidence 4567889999999999642 2 3443 458899999999987653 2211 2367889999996656
Q ss_pred eEEecCCcEeEEEEeeEEcC-CC---e-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEe
Q 040962 73 CIALLSGSTNINVTDVTCGP-GH---G-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFEN 147 (247)
Q Consensus 73 ~i~i~s~~~nV~I~nc~~~~-~~---g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~n 147 (247)
-| .+ .-...+++|.+.. .. | |.--+ +.....-....|.||++.+....++++= .-+.-..+.|.+
T Consensus 223 FI-FG--~g~a~fe~C~i~s~~~~~~g~ITA~~---r~~~~~~~GfvF~~C~itg~~~~~yLGR----pW~~ysrvVf~~ 292 (366)
T PLN02665 223 FI-FG--SGKSLYLNTELHVVGDGGLRVITAQA---RNSEAEDSGFSFVHCKVTGTGTGAYLGR----AWMSRPRVVFAY 292 (366)
T ss_pred ee-cc--ccceeeEccEEEEecCCCcEEEEcCC---CCCCCCCceEEEEeeEEecCCCceeecC----CCCCcceEEEEc
Confidence 54 23 3477999999874 22 2 22211 1111234577899999987643355541 123346788888
Q ss_pred EEEeCC
Q 040962 148 IFMSNV 153 (247)
Q Consensus 148 i~~~~~ 153 (247)
..|...
T Consensus 293 t~m~~~ 298 (366)
T PLN02665 293 TEMSSV 298 (366)
T ss_pred cccCCe
Confidence 888864
No 44
>PLN02682 pectinesterase family protein
Probab=92.30 E-value=6.9 Score=35.56 Aligned_cols=112 Identities=11% Similarity=0.070 Sum_probs=57.3
Q ss_pred ceecEEEEeEEEEcCCCC-------CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEec
Q 040962 29 GCHKVSIDNIKITAPYQS-------PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSL 101 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~-------~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~ 101 (247)
..+++..+|++|.|.... +-.-++.+. .+++.+.+|.|....|-+-...+ .-.++||++.+.-.+=+|.
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~-gDr~~fy~C~f~G~QDTLy~~~g--Rqyf~~C~IeG~VDFIFG~- 236 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRIS-ADTAAFYGCKFLGAQDTLYDHLG--RHYFKDCYIEGSVDFIFGN- 236 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEec-CCcEEEEcceEeccccceEECCC--CEEEEeeEEcccccEEecC-
Confidence 446777777777774310 011122332 46777777777776666655442 4677777776654554442
Q ss_pred cccCCCCcEEEEEEEeeEEeCCce-eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 102 GRYANERNVHGLAVRNCTFRGTTN-GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 102 g~~~~~~~i~nI~v~ni~~~~~~~-gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|++|.+....+ .-.|..........-....|.|++++..
T Consensus 237 ---------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 237 ---------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ---------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 245666666653211 1123222110011123456777777653
No 45
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=92.27 E-value=6.1 Score=33.13 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=35.4
Q ss_pred ecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEc-cCCceEEecCCcEeEEEEeeEEcC
Q 040962 31 HKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIG-TGDDCIALLSGSTNINVTDVTCGP 92 (247)
Q Consensus 31 ~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~-~~DD~i~i~s~~~nV~I~nc~~~~ 92 (247)
+..+++|+.|-.+ ..||||..+ +-+|+|++.. .+.|++.+|+....++|.+.-...
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~ 117 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARN 117 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEE
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccC
Confidence 5677888777443 357888776 5778887775 367888888754455555554443
No 46
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=91.94 E-value=0.84 Score=39.84 Aligned_cols=116 Identities=21% Similarity=0.286 Sum_probs=61.9
Q ss_pred ecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEcc-CCceEEecC--CcEeEEEEeeEE-----cCC---CeEEEE
Q 040962 31 HKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGT-GDDCIALLS--GSTNINVTDVTC-----GPG---HGISVG 99 (247)
Q Consensus 31 ~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~-~DD~i~i~s--~~~nV~I~nc~~-----~~~---~gi~ig 99 (247)
+|++|+++++....++--..|++=. -+.++|.||.++. ..|+|.-.- .-+||+|+|-++ ..+ +||.||
T Consensus 151 rnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngkinwgigig 229 (464)
T PRK10123 151 RNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIG 229 (464)
T ss_pred hccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecccceeeehheheeecccCCcccceeeee
Confidence 5677777777665432112244422 2467788888764 334442211 136777766543 333 578887
Q ss_pred eccc-----cCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEE
Q 040962 100 SLGR-----YANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFM 150 (247)
Q Consensus 100 s~g~-----~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~ 150 (247)
-.|. |+....++|..+-|++=.+...-+.+ ..| +.=.|+||.-+||+-
T Consensus 230 lagstydn~ype~q~vknfvvanitgs~crqlvhv--eng-khfvirnvkaknitp 282 (464)
T PRK10123 230 LAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHV--ENG-KHFVIRNIKAKNITP 282 (464)
T ss_pred eccccccCCCchhhhhhhEEEEeccCcChhheEEe--cCC-cEEEEEeeeccccCC
Confidence 6654 23445577777777765444322222 222 223466666666653
No 47
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=91.56 E-value=8.8 Score=35.49 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=33.6
Q ss_pred ceecEEEEeEEEEcCCCC----C--CCCeeeecCcccEEEEeeEEccCCceEEecCC----------cEeEEEEeeEEcC
Q 040962 29 GCHKVSIDNIKITAPYQS----P--NTDGIKIGDSKGIKITHSSIGTGDDCIALLSG----------STNINVTDVTCGP 92 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~----~--n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~----------~~nV~I~nc~~~~ 92 (247)
..+++..+||+|.|.... . -.-.+.+. .+.+.+.+|.|....|-+-..+. ...-.++||++.+
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~-GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTD-GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEc-CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 445666666666664210 0 11122222 35666666666655555544210 1145666666665
Q ss_pred CCeEEEE
Q 040962 93 GHGISVG 99 (247)
Q Consensus 93 ~~gi~ig 99 (247)
.-.+=+|
T Consensus 283 ~VDFIFG 289 (422)
T PRK10531 283 DVDFVFG 289 (422)
T ss_pred cccEEcc
Confidence 4444444
No 48
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=91.35 E-value=6.8 Score=37.62 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=74.6
Q ss_pred eceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccC
Q 040962 28 YGCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYA 105 (247)
Q Consensus 28 ~~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~ 105 (247)
...+++..+|++|.|.... +-.-++.+ .++.+.+.+|.|....|-+-..++ .-.+++|++.+.-.+=+|.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv-~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~----- 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRS-DSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN----- 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC-----
Confidence 3558899999999996431 22223444 358899999999988888776653 4578999998876676663
Q ss_pred CCCcEEEEEEEeeEEeCCc------e--eEEEEEecCCCCceEEcEEEEeEEEeCCC
Q 040962 106 NERNVHGLAVRNCTFRGTT------N--GVRIKTWASPQANVASGFTFENIFMSNVE 154 (247)
Q Consensus 106 ~~~~i~nI~v~ni~~~~~~------~--gi~ik~~~~~~~g~i~nI~f~ni~~~~~~ 154 (247)
-...|+||.+.-.. . .-.|..........-..+.|.|++++...
T Consensus 399 -----a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~ 450 (553)
T PLN02708 399 -----SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTE 450 (553)
T ss_pred -----ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCC
Confidence 46788999887321 1 12333221111223346789999998643
No 49
>PLN02480 Probable pectinesterase
Probab=91.26 E-value=6.2 Score=35.53 Aligned_cols=77 Identities=14% Similarity=0.019 Sum_probs=39.0
Q ss_pred EEccEEEEeeEEeCCC---------CcEEEE-eceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEE
Q 040962 6 FVTNSRISGITSVNSK---------NAHISL-YGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIA 75 (247)
Q Consensus 6 ~~~nv~i~giti~n~~---------~~~i~~-~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~ 75 (247)
..++++++||+|.|.. ..++-+ ...+.+.+.||++....|. +-. ....-..++|+|.-.=|-|
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDT-----Ly~-~~gR~yf~~C~IeG~VDFI- 202 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNT-----LFD-YKGRHYYHSCYIQGSIDFI- 202 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccce-----eEe-CCCCEEEEeCEEEeeeeEE-
Confidence 3456666666666651 122322 2456666666666665442 111 1134566666666443332
Q ss_pred ecCCcEeEEEEeeEEc
Q 040962 76 LLSGSTNINVTDVTCG 91 (247)
Q Consensus 76 i~s~~~nV~I~nc~~~ 91 (247)
.|.-...+++|.+.
T Consensus 203 --FG~g~a~fe~C~i~ 216 (343)
T PLN02480 203 --FGRGRSIFHNCEIF 216 (343)
T ss_pred --ccceeEEEEccEEE
Confidence 22235666666665
No 50
>PLN02634 probable pectinesterase
Probab=91.25 E-value=10 Score=34.29 Aligned_cols=80 Identities=8% Similarity=0.054 Sum_probs=44.1
Q ss_pred eecEEEEeEEEEcCCCC-------CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEecc
Q 040962 30 CHKVSIDNIKITAPYQS-------PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLG 102 (247)
Q Consensus 30 ~~nv~i~n~~I~~~~~~-------~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g 102 (247)
.+++..+|++|.|.... .-.-++.+. .+.+.+.+|.|....|-+-... -.-.++||++.+.-.+=+|.
T Consensus 148 a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~-- 222 (359)
T PLN02634 148 ANYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-GDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGN-- 222 (359)
T ss_pred CCCeEEEeCeEEeCCccCCCCCCCCceEEEEec-CCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCC--
Confidence 46667777777764310 011123333 3667777777776666655443 25667777776554444442
Q ss_pred ccCCCCcEEEEEEEeeEEeC
Q 040962 103 RYANERNVHGLAVRNCTFRG 122 (247)
Q Consensus 103 ~~~~~~~i~nI~v~ni~~~~ 122 (247)
-...|+||.+..
T Consensus 223 --------g~a~Fe~C~I~s 234 (359)
T PLN02634 223 --------GRSMYKDCELHS 234 (359)
T ss_pred --------ceEEEeccEEEE
Confidence 233566666654
No 51
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=91.03 E-value=2.6 Score=37.21 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=63.6
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++.++|++|.|.... ...-++.+. .+++.+.+|.|...-|-+-..++ ...++||++.+.-.+=+|.
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG~------ 155 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFGN------ 155 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEES------
T ss_pred cccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEECC------
Confidence 458899999999985321 122344554 47899999999988888777653 6788999998776676764
Q ss_pred CCcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 107 ERNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||++.... .+..|..........-....|.|++++..
T Consensus 156 ----~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 156 ----GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp ----SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred ----eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 24468888887432 12344332110112234668999999864
No 52
>PLN02682 pectinesterase family protein
Probab=90.89 E-value=7.8 Score=35.23 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=70.8
Q ss_pred EEEccEEEEeeEEeCCCC---------cE--EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCce
Q 040962 5 NFVTNSRISGITSVNSKN---------AH--ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDC 73 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~---------~~--i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~ 73 (247)
...+++..++|+|.|... .. +.+ ..+...+.+|++....|. +-.. ...-..++|+|.-.=|-
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v-~gDr~~fy~C~f~G~QDT-----Ly~~-~gRqyf~~C~IeG~VDF 232 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRI-SADTAAFYGCKFLGAQDT-----LYDH-LGRHYFKDCYIEGSVDF 232 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEe-cCCcEEEEcceEeccccc-----eEEC-CCCEEEEeeEEcccccE
Confidence 345667777777777532 12 333 357777777777776552 2111 23567777877755454
Q ss_pred EEecCCcEeEEEEeeEEcC---CCe-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEE
Q 040962 74 IALLSGSTNINVTDVTCGP---GHG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIF 149 (247)
Q Consensus 74 i~i~s~~~nV~I~nc~~~~---~~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~ 149 (247)
| .+ .-...+++|.+.. ..| |.--+. .....-....|.||++.+.. .++++= .-+....+.|.|..
T Consensus 233 I-FG--~g~a~Fe~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF~~C~itg~g-~~yLGR----pW~~yarvVf~~t~ 301 (369)
T PLN02682 233 I-FG--NGLSLYEGCHLHAIARNFGALTAQKR---QSVLEDTGFSFVNCKVTGSG-ALYLGR----AWGTFSRVVFAYTY 301 (369)
T ss_pred E-ec--CceEEEEccEEEEecCCCeEEecCCC---CCCCCCceEEEEeeEecCCC-ceEeec----CCCCcceEEEEecc
Confidence 3 22 2367777777753 123 222110 01122356777777776643 334431 12334567777777
Q ss_pred EeCC
Q 040962 150 MSNV 153 (247)
Q Consensus 150 ~~~~ 153 (247)
|.+.
T Consensus 302 m~~~ 305 (369)
T PLN02682 302 MDNI 305 (369)
T ss_pred CCCc
Confidence 7664
No 53
>PLN02176 putative pectinesterase
Probab=90.83 E-value=9.2 Score=34.41 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=51.6
Q ss_pred ceecEEEEeEEEEcCCCC-C-------CCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEe
Q 040962 29 GCHKVSIDNIKITAPYQS-P-------NTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGS 100 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~-~-------n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs 100 (247)
..+++..+|++|.|.... . -.-++.+. .+.+.+.+|.|....|-+-... ..-.++||++.+.-.+=+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~-gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~ 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARML-GDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEec-CccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC
Confidence 568888888888885321 0 11123333 4788888888887777765554 35777888887665554543
Q ss_pred ccccCCCCcEEEEEEEeeEEeC
Q 040962 101 LGRYANERNVHGLAVRNCTFRG 122 (247)
Q Consensus 101 ~g~~~~~~~i~nI~v~ni~~~~ 122 (247)
-...|+||++..
T Consensus 197 ----------a~a~Fe~C~I~s 208 (340)
T PLN02176 197 ----------AQSIFEGCTLKL 208 (340)
T ss_pred ----------ceEEEeccEEEE
Confidence 246677777753
No 54
>PLN02671 pectinesterase
Probab=90.80 E-value=8.6 Score=34.84 Aligned_cols=111 Identities=11% Similarity=0.136 Sum_probs=56.1
Q ss_pred ceecEEEEeEEEEcCCCC------CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEecc
Q 040962 29 GCHKVSIDNIKITAPYQS------PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLG 102 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~------~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g 102 (247)
..+++..+|++|.|.... .-.-++.+. .+++.+++|.|....|-+-...+ .-.++||++.+.-.+=+|.
T Consensus 152 ~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~QDTLy~~~g--R~yf~~CyIeG~VDFIFG~-- 226 (359)
T PLN02671 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQDTLLDETG--SHYFYQCYIQGSVDFIFGN-- 226 (359)
T ss_pred ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEeccccccEeCCC--cEEEEecEEEEeccEEecc--
Confidence 346677777777775210 112233333 36777777777776666544432 4567777776554444442
Q ss_pred ccCCCCcEEEEEEEeeEEeCCce-eEEEEEecCCCCceEEcEEEEeEEEeC
Q 040962 103 RYANERNVHGLAVRNCTFRGTTN-GVRIKTWASPQANVASGFTFENIFMSN 152 (247)
Q Consensus 103 ~~~~~~~i~nI~v~ni~~~~~~~-gi~ik~~~~~~~g~i~nI~f~ni~~~~ 152 (247)
-...|+||.+..... .-.|..........-....|.|++++.
T Consensus 227 --------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg 269 (359)
T PLN02671 227 --------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVING 269 (359)
T ss_pred --------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEcc
Confidence 235666666654211 112322211001112345677777765
No 55
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=90.17 E-value=13 Score=35.99 Aligned_cols=80 Identities=8% Similarity=0.014 Sum_probs=41.1
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.... +-.-.+.+ .++...+.+|.|....|-+-..+ ..-.++||++.+.-.+=+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRV-QSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------ 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc------
Confidence 446666666666664211 11222332 23666666666666655554443 23566666666543444432
Q ss_pred CCcEEEEEEEeeEEe
Q 040962 107 ERNVHGLAVRNCTFR 121 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~ 121 (247)
-...|+||.+.
T Consensus 441 ----a~avf~~C~i~ 451 (596)
T PLN02745 441 ----AAAIFQNCLIF 451 (596)
T ss_pred ----eeEEEEecEEE
Confidence 34455555554
No 56
>PLN02916 pectinesterase family protein
Probab=89.85 E-value=11 Score=35.63 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=67.5
Q ss_pred ceecEEEEeEEEEcCCCCCC--CCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQSPN--TDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n--~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|...... .-.+.+ .++...+.+|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv-~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 345 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRV-SSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD------ 345 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEE-cCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC------
Confidence 44677888888888542212 223333 347888888888887777766653 4577888887765555553
Q ss_pred CCcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 107 ERNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.... ..-.|..........-..+.|.|++++..
T Consensus 346 ----a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 346 ----AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred ----ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 45677888775421 11234322211112234678888888864
No 57
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=89.68 E-value=12 Score=35.63 Aligned_cols=113 Identities=10% Similarity=0.112 Sum_probs=67.6
Q ss_pred eceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccC
Q 040962 28 YGCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYA 105 (247)
Q Consensus 28 ~~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~ 105 (247)
...+++..+|++|.|.... +-.-++.+. .+.+.+.+|.|....|-+-..++ .-.+++|++.+.-.+=+|.
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~-gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 381 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVG-SDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFGN----- 381 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEec-CCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceeccc-----
Confidence 3457788888888886421 122234443 47788888888887777666553 4577888887765555553
Q ss_pred CCCcEEEEEEEeeEEeCCce---eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 106 NERNVHGLAVRNCTFRGTTN---GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 106 ~~~~i~nI~v~ni~~~~~~~---gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+..... .-+|..........-..+.|.|++++..
T Consensus 382 -----a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 382 -----SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred -----ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 346777777764321 1234322111112224567888888864
No 58
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=89.65 E-value=17 Score=34.61 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=86.2
Q ss_pred EEEEccEEEEeeEEeCCCC----cE--EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEec
Q 040962 4 FNFVTNSRISGITSVNSKN----AH--ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALL 77 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~----~~--i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~ 77 (247)
....+++..++|+|.|... .. +.+ ..+...+.+|++....|. +-... ..-..++|+|.-.=|-| .
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv-~gDr~~fy~C~f~GyQDT-----Ly~~~-~Rqyy~~C~I~GtVDFI-F- 379 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRV-GSDKSVVYRCSVEGYQDS-----LYTHS-KRQFYRETDITGTVDFI-F- 379 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEe-cCCcEEEEeeeEeccCCc-----ceeCC-CCEEEEeeEEcccccee-c-
Confidence 3456889999999999843 23 333 468899999999997763 22222 45688999999665554 2
Q ss_pred CCcEeEEEEeeEEcCC-----Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEe
Q 040962 78 SGSTNINVTDVTCGPG-----HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMS 151 (247)
Q Consensus 78 s~~~nV~I~nc~~~~~-----~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~ 151 (247)
|.-...++||.+..- .| |.-- ++ .....-....|.||++.... ..+++= .-..-..+.|.+..|.
T Consensus 380 -G~a~avFq~C~I~~~~~~~~~g~ITAq--~R-~~~~~~~Gfvf~~C~it~~~-~~yLGR----PW~~ysrvVf~~t~l~ 450 (529)
T PLN02170 380 -GNSAVVFQSCNIAARKPSGDRNYVTAQ--GR-SDPNQNTGISIHNCRITAES-MTYLGR----PWKEYSRTVVMQSFID 450 (529)
T ss_pred -ccceEEEeccEEEEecCCCCceEEEec--CC-CCCCCCceEEEEeeEEecCC-ceeeeC----CCCCCceEEEEecccC
Confidence 334799999998642 12 2221 11 12233568999999998754 344431 1233567888888887
Q ss_pred CC
Q 040962 152 NV 153 (247)
Q Consensus 152 ~~ 153 (247)
..
T Consensus 451 ~~ 452 (529)
T PLN02170 451 GS 452 (529)
T ss_pred Ce
Confidence 64
No 59
>PLN02432 putative pectinesterase
Probab=89.51 E-value=9.1 Score=33.69 Aligned_cols=110 Identities=14% Similarity=0.165 Sum_probs=68.7
Q ss_pred ceecEEEEeEEEEcCCCC-CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCC
Q 040962 29 GCHKVSIDNIKITAPYQS-PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANE 107 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~-~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~ 107 (247)
..+++.++||+|.|.... ...-++.+. .+.+.+.+|.|....|-+-...+ .-.++||.+.+.-.+=+|.
T Consensus 92 ~a~~f~a~nlt~~Nt~g~~~QAvAl~v~-gDr~~f~~c~~~G~QDTLy~~~g--r~yf~~c~I~G~VDFIFG~------- 161 (293)
T PLN02432 92 LASDFVGRFLTIQNTFGSSGKAVALRVA-GDRAAFYGCRILSYQDTLLDDTG--RHYYRNCYIEGATDFICGN------- 161 (293)
T ss_pred ECCCeEEEeeEEEeCCCCCCceEEEEEc-CCcEEEEcceEecccceeEECCC--CEEEEeCEEEecccEEecC-------
Confidence 457888999999986421 122233333 47899999999888787765543 5688899888765665653
Q ss_pred CcEEEEEEEeeEEeCCc--eeEEEEEecCCCCceEEcEEEEeEEEeC
Q 040962 108 RNVHGLAVRNCTFRGTT--NGVRIKTWASPQANVASGFTFENIFMSN 152 (247)
Q Consensus 108 ~~i~nI~v~ni~~~~~~--~gi~ik~~~~~~~g~i~nI~f~ni~~~~ 152 (247)
-...|++|.+.... .| .|..+.......-....|.|++++.
T Consensus 162 ---g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 162 ---AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred ---ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEcc
Confidence 24678888886421 13 4433221111222357899999885
No 60
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=89.37 E-value=13 Score=35.85 Aligned_cols=80 Identities=5% Similarity=-0.003 Sum_probs=42.2
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.... +-.-++.+ ..+...+.+|.|....|-+-..+ ..-.++||++.+.-.+=+|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------ 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMS-SADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------ 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEE-cCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc------
Confidence 346677777777664321 11112322 34667777777766666554443 23456666666554444442
Q ss_pred CCcEEEEEEEeeEEe
Q 040962 107 ERNVHGLAVRNCTFR 121 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~ 121 (247)
-...|+||.+.
T Consensus 414 ----a~avfq~c~i~ 424 (565)
T PLN02468 414 ----SAVVFQNCNIL 424 (565)
T ss_pred ----ceEEEeccEEE
Confidence 34555666554
No 61
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=89.36 E-value=7.8 Score=37.07 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=66.9
Q ss_pred EeceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEecccc
Q 040962 27 LYGCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRY 104 (247)
Q Consensus 27 ~~~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~ 104 (247)
....+++..+|++|.|.... +..-++.+. .+++.+.+|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~-~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~---- 387 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVD-SDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGN---- 387 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccC----
Confidence 34557788888888886421 222233343 47888888888877777665543 4578888887765555553
Q ss_pred CCCCcEEEEEEEeeEEeCCce----eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 105 ANERNVHGLAVRNCTFRGTTN----GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 105 ~~~~~i~nI~v~ni~~~~~~~----gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+..... .-.|..+.......-..+.|.|++++..
T Consensus 388 ------a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 388 ------GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ------ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 346777777764311 1233322110111224567888888753
No 62
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=89.01 E-value=14 Score=34.08 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=33.6
Q ss_pred cEeEEEEeeEEcCC--CeEEEEeccc---------------cCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEc
Q 040962 80 STNINVTDVTCGPG--HGISVGSLGR---------------YANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASG 142 (247)
Q Consensus 80 ~~nV~I~nc~~~~~--~gi~igs~g~---------------~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~n 142 (247)
+.|+.++|...-.. +|+-+|+-.. |+...--.|=.++|+...++. |+.+ |+.+++++|+|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~l-GVG~--~~DG~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSL-GVGI--GMDGKGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-S-SESC--EEECCS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccc-eeee--eecCCCceEee
Confidence 47888888875443 5777776421 111112345567777776653 4333 23336788888
Q ss_pred EEEEeEEEe
Q 040962 143 FTFENIFMS 151 (247)
Q Consensus 143 I~f~ni~~~ 151 (247)
|+.+++.-+
T Consensus 340 i~~~d~~g~ 348 (549)
T PF09251_consen 340 ITVQDCAGA 348 (549)
T ss_dssp EEEES-SSE
T ss_pred EEeecccCC
Confidence 888776544
No 63
>PLN02497 probable pectinesterase
Probab=89.01 E-value=17 Score=32.65 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=62.8
Q ss_pred eceecEEEEeEEEEcCCCCC-------C--CCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEE
Q 040962 28 YGCHKVSIDNIKITAPYQSP-------N--TDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISV 98 (247)
Q Consensus 28 ~~~~nv~i~n~~I~~~~~~~-------n--~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~i 98 (247)
...+++..+|++|.|....+ . .-++.+ ..+...+++|.+....|-+-... ..-.++||++.+.-.+=+
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v-~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIF 188 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMI-GGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIF 188 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEe-cCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEc
Confidence 35577888888888853210 1 112333 34778888888887777665443 256778888776655555
Q ss_pred EeccccCCCCcEEEEEEEeeEEeCCce------eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 99 GSLGRYANERNVHGLAVRNCTFRGTTN------GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 99 gs~g~~~~~~~i~nI~v~ni~~~~~~~------gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
|. -...|+||.+..... .-+|..........-....|.|++++..
T Consensus 189 G~----------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 189 GS----------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred cC----------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 43 245677777754211 1233322110112223457778877763
No 64
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=88.70 E-value=14 Score=36.38 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=73.7
Q ss_pred EEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCc
Q 040962 6 FVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGS 80 (247)
Q Consensus 6 ~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~ 80 (247)
..+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| + |.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI-F--G~ 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDT-----LYAHS-HRQFYRDCTISGTIDFL-F--GD 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccch-----hccCC-CcEEEEeCEEEEeccEE-e--cC
Confidence 35667777777777643 222222 356777777777775542 21112 34677777777554443 2 23
Q ss_pred EeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEE----EEEecCCCCceEEcEEEEeEE
Q 040962 81 TNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVR----IKTWASPQANVASGFTFENIF 149 (247)
Q Consensus 81 ~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~----ik~~~~~~~g~i~nI~f~ni~ 149 (247)
-...++||.+... .| |.-- |+ .....-..+.|.||++......+. .+.+-|..-.....+.|-+..
T Consensus 406 a~avfq~C~I~~r~~~~~~~~~ITAq--gr-~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~ 482 (670)
T PLN02217 406 AAAVFQNCTLLVRKPLLNQACPITAH--GR-KDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTF 482 (670)
T ss_pred ceEEEEccEEEEccCCCCCceeEecC--CC-CCCCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecc
Confidence 4688888887632 12 2211 11 122334678899998877532111 122223223445677888887
Q ss_pred EeCC
Q 040962 150 MSNV 153 (247)
Q Consensus 150 ~~~~ 153 (247)
|.+.
T Consensus 483 l~~~ 486 (670)
T PLN02217 483 IPDF 486 (670)
T ss_pred cCCe
Confidence 7764
No 65
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=88.59 E-value=0.61 Score=28.39 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=12.0
Q ss_pred eeecCcccEEEEeeEEccCCceEEecC
Q 040962 52 IKIGDSKGIKITHSSIGTGDDCIALLS 78 (247)
Q Consensus 52 idi~~s~nV~I~n~~i~~~DD~i~i~s 78 (247)
|.+..|.+.+|++..+....|+|.+..
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 344444444444444444444444443
No 66
>PLN02497 probable pectinesterase
Probab=88.52 E-value=8.1 Score=34.61 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=74.5
Q ss_pred EEEccEEEEeeEEeCCCC-----------cE--EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCC
Q 040962 5 NFVTNSRISGITSVNSKN-----------AH--ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGD 71 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~-----------~~--i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~D 71 (247)
...+++..++|+|.|... .. +.+ ..+...+.+|.+....|. +-. ....-..++|+|.-.=
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v-~gDr~~fy~C~f~G~QDT-----Ly~-~~gRqyf~~C~IeG~V 184 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMI-GGDKSAFYSCGFAGVQDT-----LWD-SDGRHYFKRCTIQGAV 184 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEe-cCCcEEEEeeEEeccccc-----eee-CCCcEEEEeCEEEecc
Confidence 346778888888887642 12 333 357788888888886653 211 1235678888888654
Q ss_pred ceEEecCCcEeEEEEeeEEcCC--------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEc
Q 040962 72 DCIALLSGSTNINVTDVTCGPG--------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASG 142 (247)
Q Consensus 72 D~i~i~s~~~nV~I~nc~~~~~--------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~n 142 (247)
|-| .+ .-...+++|.+..- .| |.--+ +.....-.-..|.||++.+.. ..+++=- -+.-..
T Consensus 185 DFI-FG--~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~---r~~~~~~~GfvF~~C~itg~g-~~yLGRP----W~~ysr 253 (331)
T PLN02497 185 DFI-FG--SGQSIYESCVIQVLGGQLEPGLAGFITAQG---RTNPYDANGFVFKNCLVYGTG-SAYLGRP----WRGYSR 253 (331)
T ss_pred cEE-cc--CceEEEEccEEEEecCcCCCCCceEEEecC---CCCCCCCceEEEEccEEccCC-CEEEeCC----CCCCce
Confidence 544 22 33678888887631 12 22211 001223456788888887643 3344311 223467
Q ss_pred EEEEeEEEeCC
Q 040962 143 FTFENIFMSNV 153 (247)
Q Consensus 143 I~f~ni~~~~~ 153 (247)
+.|.+..|.+.
T Consensus 254 vvf~~t~m~~~ 264 (331)
T PLN02497 254 VLFYNSNLTDV 264 (331)
T ss_pred EEEEecccCCe
Confidence 77777777764
No 67
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=88.43 E-value=3.9 Score=36.04 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=79.8
Q ss_pred EEEccEEEEeeEEeCCCC------cEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecC
Q 040962 5 NFVTNSRISGITSVNSKN------AHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLS 78 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~------~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s 78 (247)
...+++.+++|+|.|... -.|.+ ..+...+.+|.+....| .+-... ....++||+|.-.-|-|- +.
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QD-----TL~~~~-~r~y~~~c~IeG~vDFIf-G~ 155 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQD-----TLYANG-GRQYFKNCYIEGNVDFIF-GN 155 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT------EEE-S-SEEEEES-EEEESEEEEE-ES
T ss_pred ccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccc-----eeeecc-ceeEEEeeEEEecCcEEE-CC
Confidence 346899999999998743 23444 56889999999999765 343333 468899999997767653 33
Q ss_pred CcEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCc--------eeEEEEEecCCCCceEEcE
Q 040962 79 GSTNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTT--------NGVRIKTWASPQANVASGF 143 (247)
Q Consensus 79 ~~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~--------~gi~ik~~~~~~~g~i~nI 143 (247)
-...+++|.+... .| |.--+. .....-....|.||++.... ...++.-. -+.-..+
T Consensus 156 --~~a~f~~c~i~~~~~~~~~~~~ItA~~r---~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRp----W~~~s~v 226 (298)
T PF01095_consen 156 --GTAVFENCTIHSRRPGGGQGGYITAQGR---TSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRP----WGPYSRV 226 (298)
T ss_dssp --SEEEEES-EEEE--SSTSSTEEEEEE------CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE------SSEETEE
T ss_pred --eeEEeeeeEEEEeccccccceeEEeCCc---cccCCCeEEEEEEeEEecCccccccccceeEEecCc----ccceeeE
Confidence 3678999998731 23 332211 12234678899999998742 23455422 2344678
Q ss_pred EEEeEEEeCCCcc
Q 040962 144 TFENIFMSNVENP 156 (247)
Q Consensus 144 ~f~ni~~~~~~~~ 156 (247)
.|.|..|.+.-.|
T Consensus 227 vf~~t~m~~~I~p 239 (298)
T PF01095_consen 227 VFINTYMDDHINP 239 (298)
T ss_dssp EEES-EE-TTEET
T ss_pred EEEccccCCeeec
Confidence 9999999976444
No 68
>PLN02432 putative pectinesterase
Probab=88.19 E-value=18 Score=31.93 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=86.6
Q ss_pred EEEEccEEEEeeEEeCCCC-----cEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecC
Q 040962 4 FNFVTNSRISGITSVNSKN-----AHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLS 78 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~-----~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s 78 (247)
....+++.+++|+|.|... -.+.+ ..+...+.+|.+....|. +-.. .-.-..+||+|.-.=|-| .+.
T Consensus 90 ~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v-~gDr~~f~~c~~~G~QDT-----Ly~~-~gr~yf~~c~I~G~VDFI-FG~ 161 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTFGSSGKAVALRV-AGDRAAFYGCRILSYQDT-----LLDD-TGRHYYRNCYIEGATDFI-CGN 161 (293)
T ss_pred EEECCCeEEEeeEEEeCCCCCCceEEEEE-cCCcEEEEcceEecccce-----eEEC-CCCEEEEeCEEEecccEE-ecC
Confidence 3456899999999999843 23444 468899999999997653 3222 246899999999766655 333
Q ss_pred CcEeEEEEeeEEcC--C-Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 79 GSTNINVTDVTCGP--G-HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 79 ~~~nV~I~nc~~~~--~-~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...+++|.+.. . .| |.--+. .....-.-..|.||++.+.. ..+++ ..-+.-..+.|.|..|...
T Consensus 162 --g~a~Fe~c~i~s~~~~~g~itA~~r---~~~~~~~Gfvf~~c~itg~g-~~yLG----RpW~~~srvvf~~t~l~~~ 230 (293)
T PLN02432 162 --AASLFEKCHLHSLSPNNGAITAQQR---TSASENTGFTFLGCKLTGAG-TTYLG----RPWGPYSRVVFALSYMSSV 230 (293)
T ss_pred --ceEEEEeeEEEEecCCCCeEEecCC---CCCCCCceEEEEeeEEcccc-hhhcc----CCCCCccEEEEEecccCCe
Confidence 469999999874 1 34 332111 11223457899999998643 23332 1124457889999888764
No 69
>PLN02671 pectinesterase
Probab=88.15 E-value=14 Score=33.45 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=69.6
Q ss_pred EEccEEEEeeEEeCCCC--------c--EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEE
Q 040962 6 FVTNSRISGITSVNSKN--------A--HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIA 75 (247)
Q Consensus 6 ~~~nv~i~giti~n~~~--------~--~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~ 75 (247)
..+++..++|+|.|... . ++.+ ..+.+.+.+|++....|. +-.. .-.-.+++|+|.-.=|-|
T Consensus 152 ~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv-~gDra~f~~c~f~G~QDT-----Ly~~-~gR~yf~~CyIeG~VDFI- 223 (359)
T PLN02671 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRI-SGDKAFFYKVRVLGAQDT-----LLDE-TGSHYFYQCYIQGSVDFI- 223 (359)
T ss_pred ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE-cCccEEEEcceEeccccc-----cEeC-CCcEEEEecEEEEeccEE-
Confidence 45667777777777621 1 2333 357777777877776552 2111 234677777777554544
Q ss_pred ecCCcEeEEEEeeEEcCC---Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEe
Q 040962 76 LLSGSTNINVTDVTCGPG---HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMS 151 (247)
Q Consensus 76 i~s~~~nV~I~nc~~~~~---~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~ 151 (247)
.+ .-...+++|.+... .| |.--+. .....-....|.||++.+.. ..+++=. -+.-..+.|.|..|.
T Consensus 224 FG--~g~A~Fe~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF~~C~itg~g-~vyLGRP----W~~yarvVf~~t~m~ 293 (359)
T PLN02671 224 FG--NAKSLYQDCVIQSTAKRSGAIAAHHR---DSPTEDTGFSFVNCVINGTG-KIYLGRA----WGNYSRTVYSNCFIA 293 (359)
T ss_pred ec--ceeEEEeccEEEEecCCCeEEEeecc---CCCCCCccEEEEccEEccCc-cEEEeCC----CCCCceEEEEecccC
Confidence 22 23577777777531 23 222111 01122356777777776532 3344311 122356777777776
Q ss_pred CC
Q 040962 152 NV 153 (247)
Q Consensus 152 ~~ 153 (247)
+.
T Consensus 294 ~~ 295 (359)
T PLN02671 294 DI 295 (359)
T ss_pred Ce
Confidence 54
No 70
>PLN02176 putative pectinesterase
Probab=88.08 E-value=11 Score=33.88 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=73.5
Q ss_pred EEccEEEEeeEEeCCCC----------cE--EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCce
Q 040962 6 FVTNSRISGITSVNSKN----------AH--ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDC 73 (247)
Q Consensus 6 ~~~nv~i~giti~n~~~----------~~--i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~ 73 (247)
..+++..++|+|.|... .. +.+ ..+...+.+|++....|. +-.. ...-..++|+|.-.=|-
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v-~gDr~~f~~C~f~G~QDT-----Ly~~-~gRqyf~~CyIeG~VDF 192 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARM-LGDKYAIIDSSFDGFQDT-----LFDG-KGRHYYKRCVISGGIDF 192 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEe-cCccEEEEccEEecccce-----eEeC-CcCEEEEecEEEecccE
Confidence 46778888888887632 22 333 357788888888876552 2222 23577788888865555
Q ss_pred EEecCCcEeEEEEeeEEcCC---------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcE
Q 040962 74 IALLSGSTNINVTDVTCGPG---------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGF 143 (247)
Q Consensus 74 i~i~s~~~nV~I~nc~~~~~---------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI 143 (247)
| .+ .-...+++|.+..- .| |.--+ +.....-.-..|.||++.+.. -.+++= .-+.-..+
T Consensus 193 I-FG--~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~---r~~~~~~~GfvF~~C~itg~g-~~yLGR----PW~~yarv 261 (340)
T PLN02176 193 I-FG--YAQSIFEGCTLKLTLGIYPPNEPYGTITAQG---RPSPSDKGGFVFKDCTVTGVG-KALLGR----AWGSYARV 261 (340)
T ss_pred E-ec--CceEEEeccEEEEecccCCCCCCcEEEEeCC---CCCCCCCcEEEEECCEEccCc-ceeeec----CCCCCceE
Confidence 4 23 23678888887531 12 22111 001123356788888886643 233331 12334667
Q ss_pred EEEeEEEeCC
Q 040962 144 TFENIFMSNV 153 (247)
Q Consensus 144 ~f~ni~~~~~ 153 (247)
.|.|..|.+.
T Consensus 262 Vf~~t~m~~~ 271 (340)
T PLN02176 262 IFYRSRFSDV 271 (340)
T ss_pred EEEecCcCCe
Confidence 7777777654
No 71
>PLN02304 probable pectinesterase
Probab=87.83 E-value=20 Score=32.77 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=68.7
Q ss_pred ceecEEEEeEEEEcCCCC-----CC--CCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEec
Q 040962 29 GCHKVSIDNIKITAPYQS-----PN--TDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSL 101 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~-----~n--~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~ 101 (247)
..+++..+|++|.|.... .. .-++.+ ..+.+.+.+|.|....|-+-...+ .-.++||++.+.-.+=+|.
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v-~gDra~fy~C~f~G~QDTLy~~~g--R~Yf~~CyIeG~VDFIFG~- 235 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRI-AGDQAAFWGCGFFGAQDTLHDDRG--RHYFKDCYIQGSIDFIFGD- 235 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEe-cCCcEEEEeceEecccceeEeCCC--CEEEEeeEEcccccEEecc-
Confidence 457888999999986421 01 112333 358899999999888887765543 5788999998776666654
Q ss_pred cccCCCCcEEEEEEEeeEEeCCcee---------EEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 102 GRYANERNVHGLAVRNCTFRGTTNG---------VRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 102 g~~~~~~~i~nI~v~ni~~~~~~~g---------i~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+...... =+|..........-....|.|++++..
T Consensus 236 ---------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 236 ---------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred ---------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccC
Confidence 3457888887643211 133322211112223556889988763
No 72
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=87.51 E-value=23 Score=33.78 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=67.6
Q ss_pred eceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccC
Q 040962 28 YGCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYA 105 (247)
Q Consensus 28 ~~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~ 105 (247)
...+++..+|++|.|.... +-.-.+.+. .+...+.+|.|....|-+-..++ .-.+++|++.+.-.+=+|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSD-SDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD----- 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC-----
Confidence 3457788888888886421 122233333 47888888888887777766653 4577888887765565553
Q ss_pred CCCcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 106 NERNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 106 ~~~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.... ..-.|..........-....|.|++++..
T Consensus 362 -----a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 -----ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred -----ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 34678888776421 11233322211112234577888888764
No 73
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=87.34 E-value=3.9 Score=35.85 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=34.8
Q ss_pred EEecCCcEeEEEEeeEEcCCCeEEEEec---cccCCCCcEEEEEEEeeEEeCCc-----eeEEEEEecCCCCceEEcEEE
Q 040962 74 IALLSGSTNINVTDVTCGPGHGISVGSL---GRYANERNVHGLAVRNCTFRGTT-----NGVRIKTWASPQANVASGFTF 145 (247)
Q Consensus 74 i~i~s~~~nV~I~nc~~~~~~gi~igs~---g~~~~~~~i~nI~v~ni~~~~~~-----~gi~ik~~~~~~~g~i~nI~f 145 (247)
+++.. |.|..|+|..+..+.|+-||-. |+|. .--.|....|+.+.++. +||.|.+ +...+=|-+
T Consensus 295 vaiyg-cdnfvidni~mvnsagmligygvikg~yl--sipqnfkln~i~ldn~~l~yklrgiqiss-----gnatsfvai 366 (464)
T PRK10123 295 VAIYG-CDNFVIDNIEMINSAGMLIGYGVIKGKYL--SIPQNFKLNNIQLDNTHLAYKLRGIQISA-----GNAVSFVAL 366 (464)
T ss_pred EEEEc-ccceEEeccccccccccEEEeeeeeccEe--cccccceeceEeecccccceeeeeeEecc-----CCcceEEEE
Confidence 44443 6666666666666666555431 2221 11245555666665543 4555543 222334445
Q ss_pred EeEEEeC
Q 040962 146 ENIFMSN 152 (247)
Q Consensus 146 ~ni~~~~ 152 (247)
.|+.|+.
T Consensus 367 tn~~mkr 373 (464)
T PRK10123 367 TNIEMKR 373 (464)
T ss_pred eeeehhh
Confidence 5555543
No 74
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=87.18 E-value=15 Score=35.46 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=59.5
Q ss_pred ceecEEEEeEEEEcCCCCCCCC--eeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQSPNTD--GIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n~D--Gidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.......- ++.+ ..+...+.+|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRS-GADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGN------ 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceeccc------
Confidence 3467777777777753211112 2333 346777777777776666655542 4577777776654454442
Q ss_pred CCcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 107 ERNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.... ..-.|..+.......-..+.|.|++++..
T Consensus 409 ----a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 ----AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ----ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 34567777765421 01123222110112223567777777753
No 75
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=86.95 E-value=8.6 Score=37.72 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=68.5
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCC
Q 040962 29 GCHKVSIDNIKITAPYQSPNTDGIKIG-DSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANE 107 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~ 107 (247)
..+++..+|++|.|.......-.+-+. ..+...+.+|.|....|-+-..+ ..-.+++|++.+.-.+=+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC-------
Confidence 346778888888885421111223221 34788888888887777665554 35688888887665555553
Q ss_pred CcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 108 RNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 108 ~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.... ..-.|..+.......-..+.|.|+++...
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecC
Confidence 34788888887431 12234332211112334688999999975
No 76
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=86.80 E-value=12 Score=35.44 Aligned_cols=67 Identities=10% Similarity=-0.023 Sum_probs=31.8
Q ss_pred eecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEE
Q 040962 30 CHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVG 99 (247)
Q Consensus 30 ~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~ig 99 (247)
.+++..+|++|.|.... +-.-.+.+. .+.+.+.+|.|....|-+-..++ .-.+++|++.+.-.+=+|
T Consensus 269 ~~~F~a~nitf~Ntag~~~~QAvAl~v~-~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG 337 (497)
T PLN02698 269 GDGFIARDIGFKNAAGPKGEQAIALSIT-SDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFG 337 (497)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEec-CCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEec
Confidence 35555666666654211 111222222 35566666666655555444432 235566666544344443
No 77
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=86.75 E-value=28 Score=33.10 Aligned_cols=114 Identities=8% Similarity=0.024 Sum_probs=68.3
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCC
Q 040962 29 GCHKVSIDNIKITAPYQSPNTDGIKIG-DSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANE 107 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~ 107 (247)
..+++..+|++|.|.......-++.+. .++...+.+|.|....|-+-..+ ..-.+++|++.+.-.+=+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 346777888888885421112233322 35788888888887777766554 35678888887765555553
Q ss_pred CcEEEEEEEeeEEeCCce----eEEEEEecCCCCceEEcEEEEeEEEeCCC
Q 040962 108 RNVHGLAVRNCTFRGTTN----GVRIKTWASPQANVASGFTFENIFMSNVE 154 (247)
Q Consensus 108 ~~i~nI~v~ni~~~~~~~----gi~ik~~~~~~~g~i~nI~f~ni~~~~~~ 154 (247)
-...|+||.+..... .-.|..........-..+.|.|++++...
T Consensus 353 ---a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 ---AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 457788888865311 12444332111122245789999988753
No 78
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=86.70 E-value=15 Score=33.92 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=49.1
Q ss_pred cccEEEEeeE-EccCCceEEecCC-----------------------cEeEEEEeeEEcCCCeEEEEeccccCCCCcEEE
Q 040962 57 SKGIKITHSS-IGTGDDCIALLSG-----------------------STNINVTDVTCGPGHGISVGSLGRYANERNVHG 112 (247)
Q Consensus 57 s~nV~I~n~~-i~~~DD~i~i~s~-----------------------~~nV~I~nc~~~~~~gi~igs~g~~~~~~~i~n 112 (247)
|-|..++|+. |..-.|++.+++. -.|=.|+|.....+.|+.+|.-| ..+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEee
Confidence 6678888887 5667899999873 26778999999888888887655 3456888
Q ss_pred EEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 113 LAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 113 I~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
|++++| ...|+.++... . .|.||++-..
T Consensus 340 i~~~d~----~g~G~~~~~~~----~-----~ftNitvId~ 367 (549)
T PF09251_consen 340 ITVQDC----AGAGIFIRGTN----K-----VFTNITVIDT 367 (549)
T ss_dssp EEEES-----SSESEEEECCS----------EEEEEEEES-
T ss_pred EEeecc----cCCceEEeecC----C-----ceeeeEEEec
Confidence 888877 23566665432 2 4566665543
No 79
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=86.63 E-value=18 Score=34.76 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=65.2
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.... +..-.+.+ .++...+.+|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 391 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRV-SADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFGN------ 391 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceeccc------
Confidence 457788888888885321 12223333 347888888888887777666553 4578888887665555553
Q ss_pred CCcEEEEEEEeeEEeCCce----eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 107 ERNVHGLAVRNCTFRGTTN----GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~~----gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.-... .-.|..+.......-..+.|.|+++...
T Consensus 392 ----a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 ----AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred ----ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 356777777754311 1123222111112234677888888764
No 80
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=86.61 E-value=21 Score=34.13 Aligned_cols=113 Identities=8% Similarity=0.096 Sum_probs=64.9
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCC
Q 040962 29 GCHKVSIDNIKITAPYQSPNTDGIKIG-DSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANE 107 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~ 107 (247)
..+++..+|++|.|.......-++.+. ..+.+.+.+|.|....|-+-..++ .-.+++|++.+.-.+=+|.
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~------- 373 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN------- 373 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC-------
Confidence 447778888888885421111223221 347788888888877777665553 4578888887765555553
Q ss_pred CcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 108 RNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 108 ~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.... ..-.|..........-..+.|.|++++..
T Consensus 374 ---a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ---AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ---ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 34567777775421 11233322211112223577888888764
No 81
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=86.58 E-value=16 Score=35.12 Aligned_cols=112 Identities=10% Similarity=0.126 Sum_probs=67.4
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.... +-.-++.+. .+.+.+.+|.|....|-+-..+ ..-.++||++.+.-.+=+|.
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~-~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 385 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVN-ADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN------ 385 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEc-CccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc------
Confidence 457888888888886432 222234343 4788888888888777765554 35588888888765555553
Q ss_pred CCcEEEEEEEeeEEeCCce--e--EEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 107 ERNVHGLAVRNCTFRGTTN--G--VRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~~--g--i~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+..... | -.|..+.......-..+.|.|++++..
T Consensus 386 ----a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 ----AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ----ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 356777777754311 1 123222110112224678888888754
No 82
>PLN02634 probable pectinesterase
Probab=86.44 E-value=19 Score=32.69 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=61.0
Q ss_pred EccEEEEeeEEeCCCC---------c--EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEE
Q 040962 7 VTNSRISGITSVNSKN---------A--HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIA 75 (247)
Q Consensus 7 ~~nv~i~giti~n~~~---------~--~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~ 75 (247)
.+++..++|+|.|... . ++.+ ..+...+.+|.+....|. +-.. .-.-..++|+|.-.=|-|
T Consensus 148 a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v-~gDra~f~~C~f~G~QDT-----L~~~-~gR~yf~~CyIeG~VDFI- 219 (359)
T PLN02634 148 ANYFTARNISFKNTAPAPMPGMQGWQAVAFRI-SGDKAFFFGCGFYGAQDT-----LCDD-AGRHYFKECYIEGSIDFI- 219 (359)
T ss_pred CCCeEEEeCeEEeCCccCCCCCCCCceEEEEe-cCCcEEEEEeEEecccce-----eeeC-CCCEEEEeeEEcccccEE-
Confidence 4566666677766531 1 2333 346666777777665442 2111 134666677776444433
Q ss_pred ecCCcEeEEEEeeEEcCC---Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEe
Q 040962 76 LLSGSTNINVTDVTCGPG---HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMS 151 (247)
Q Consensus 76 i~s~~~nV~I~nc~~~~~---~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~ 151 (247)
.+ .-...+++|.+..- .| |.-- ++ .....-....|.||++.+.. .++++= .-+....+.|.+..|.
T Consensus 220 FG--~g~a~Fe~C~I~s~~~~~g~ITA~--~R-~~~~~~~GfvF~~C~vtg~g-~~yLGR----PW~~yarvVf~~t~l~ 289 (359)
T PLN02634 220 FG--NGRSMYKDCELHSIASRFGSIAAH--GR-TCPEEKTGFAFVGCRVTGTG-PLYVGR----AMGQYSRIVYAYTYFD 289 (359)
T ss_pred cC--CceEEEeccEEEEecCCCcEEEeC--CC-CCCCCCcEEEEEcCEEcCCc-ceEecC----CCCCcceEEEEecccC
Confidence 22 23556667766531 12 2211 10 01122345666677665532 233321 1223455666666665
Q ss_pred C
Q 040962 152 N 152 (247)
Q Consensus 152 ~ 152 (247)
+
T Consensus 290 ~ 290 (359)
T PLN02634 290 A 290 (359)
T ss_pred C
Confidence 4
No 83
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=86.31 E-value=29 Score=33.43 Aligned_cols=137 Identities=12% Similarity=0.107 Sum_probs=86.8
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+.+.+.+|.|....|. +-... ..-..++|+|.-.=|-| .+
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDT-----Ly~~~-~rq~y~~C~I~GtVDFI-FG-- 397 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDT-----LYAHS-LRQFYKSCRIQGNVDFI-FG-- 397 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecccc-----ceeCC-CceEEEeeEEeecCCEE-ec--
Confidence 456789999999999863 333332 468999999999998763 32223 45678999999776655 33
Q ss_pred cEeEEEEeeEEcCC----------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE--------EEEEecCCCCceE
Q 040962 80 STNINVTDVTCGPG----------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV--------RIKTWASPQANVA 140 (247)
Q Consensus 80 ~~nV~I~nc~~~~~----------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi--------~ik~~~~~~~g~i 140 (247)
.-.+.++||.+... .+ |.-- + +.....-..+.|.||++.....-. .-+++-|..-...
T Consensus 398 ~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~--~-r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~y 474 (553)
T PLN02708 398 NSAAVFQDCAILIAPRQLKPEKGENNAVTAH--G-RTDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEY 474 (553)
T ss_pred CceEEEEccEEEEeccccCCCCCCceEEEeC--C-CCCCCCCceEEEEccEEecCCcccccccccccccceeeecCCCCc
Confidence 34899999998631 12 3221 1 112234568999999997753211 0122223122445
Q ss_pred EcEEEEeEEEeCC
Q 040962 141 SGFTFENIFMSNV 153 (247)
Q Consensus 141 ~nI~f~ni~~~~~ 153 (247)
..+.|-+..|.+.
T Consensus 475 sr~V~~~s~l~~~ 487 (553)
T PLN02708 475 SRTVFIGCNLEAL 487 (553)
T ss_pred ceEEEEecccCCe
Confidence 6788888887764
No 84
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=86.27 E-value=23 Score=34.38 Aligned_cols=135 Identities=10% Similarity=0.062 Sum_probs=72.3
Q ss_pred EEccEEEEeeEEeCCCC----cE--EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 6 FVTNSRISGITSVNSKN----AH--ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 6 ~~~nv~i~giti~n~~~----~~--i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
..+++..++|+|.|... .. +.. .++...+.+|.|....|.. -.. ...-..++|+|.-.=|-| . |
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~Dr~~f~~c~~~G~QDTL-----y~~-~~Rqyy~~C~I~GtVDFI-F--G 439 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRV-QSDRSIFLNCRFEGYQDTL-----YAQ-THRQFYRSCVITGTIDFI-F--G 439 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeEEeeccccc-----ccC-CCcEEEEeeEEEeeccEE-e--c
Confidence 45677777888877532 22 332 4577778888887766532 111 234677788877554433 2 2
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-...++||.+... .| |.--+ +.....-..+.|.||++....... ..+++-|..-+....+.|.+.
T Consensus 440 ~a~avf~~C~i~~~~~~~~~~~~iTAq~---r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s 516 (596)
T PLN02745 440 DAAAIFQNCLIFVRKPLPNQQNTVTAQG---RVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMES 516 (596)
T ss_pred ceeEEEEecEEEEecCCCCCCceEEecC---CCCCCCCceEEEEeeEEecCccccccccccceeccCCCCCCccEEEEec
Confidence 34677777777532 12 22211 111223456777777776643211 122333322344566677777
Q ss_pred EEeCC
Q 040962 149 FMSNV 153 (247)
Q Consensus 149 ~~~~~ 153 (247)
.|...
T Consensus 517 ~l~~~ 521 (596)
T PLN02745 517 TIEDV 521 (596)
T ss_pred ccCCe
Confidence 66654
No 85
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=86.21 E-value=22 Score=34.10 Aligned_cols=113 Identities=8% Similarity=0.080 Sum_probs=61.9
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeeee-cCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCC
Q 040962 29 GCHKVSIDNIKITAPYQSPNTDGIKI-GDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANE 107 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~ 107 (247)
..+++..+|++|.|.......-++.+ ...+...+.+|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 311 ~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~------- 381 (538)
T PLN03043 311 SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGN------- 381 (538)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeec-------
Confidence 44677777787777532111122322 1346777788887777776555542 4577777777665555553
Q ss_pred CcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 108 RNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 108 ~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.... ..-.|..+.......-..+.|.|+++...
T Consensus 382 ---a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 ---AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 34667777775421 01123222111112223577888888764
No 86
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=86.15 E-value=17 Score=35.00 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=71.0
Q ss_pred EEccEEEEeeEEeCCCC----cEEEE-eceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCc
Q 040962 6 FVTNSRISGITSVNSKN----AHISL-YGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGS 80 (247)
Q Consensus 6 ~~~nv~i~giti~n~~~----~~i~~-~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~ 80 (247)
..+++..++|+|.|... ..+-+ ...+...+.+|+|....|.. -... ..-..++|+|.-.=|-| .|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTL-----y~~~-~rq~y~~C~I~GtvDFI---FG~ 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTL-----YAHA-QRQFYRECNIYGTVDFI---FGN 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchh-----ccCC-CceEEEeeEEeccccee---ecc
Confidence 45677777788877643 22222 24577778888887766532 1122 34567778777554443 223
Q ss_pred EeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 81 TNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 81 ~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-.+.++||.+... .+ |.-- | +.+...-..+.|.||++......-..+++-|.+-.....+.|-+..|...
T Consensus 414 a~avfq~c~i~~~~~~~~~~~~iTA~--~-r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~ 490 (565)
T PLN02468 414 SAVVFQNCNILPRRPMKGQQNTITAQ--G-RTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGSL 490 (565)
T ss_pred ceEEEeccEEEEecCCCCCCceEEec--C-CCCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEEEEecccCCe
Confidence 4677777777521 12 2221 1 11223345677777777764321122222221123345566666666654
No 87
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=86.02 E-value=25 Score=33.70 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=86.6
Q ss_pred EEEEccEEEEeeEEeCCCC----cE--EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEec
Q 040962 4 FNFVTNSRISGITSVNSKN----AH--ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALL 77 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~----~~--i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~ 77 (247)
....+++..++|+|.|... .. +.. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| .+
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v-~~D~~~fy~C~~~G~QDT-----Ly~~~-~rqyy~~C~I~GtVDFI-FG 386 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRV-DSDQSAFYRCSMEGYQDT-----LYAHS-LRQFYRECEIYGTIDFI-FG 386 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeeccccc-----ceecC-CceEEEeeEEecccceE-cc
Confidence 3467889999999999853 23 333 468999999999997763 22222 35789999999665554 33
Q ss_pred CCcEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEeEEE
Q 040962 78 SGSTNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFM 150 (247)
Q Consensus 78 s~~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~ni~~ 150 (247)
.-...++||.+..- .| |.-- |+ .....-..+.|.||++.... ..+++= .-+.-..+.|-+..|
T Consensus 387 --~a~avfq~C~i~~r~~~~~~~~~iTA~--~r-~~~~~~~G~vf~~c~i~~~~-~~yLGR----PW~~~sr~v~~~t~l 456 (537)
T PLN02506 387 --NGAAVLQNCKIYTRVPLPLQKVTITAQ--GR-KSPHQSTGFSIQDSYVLATQ-PTYLGR----PWKQYSRTVFMNTYM 456 (537)
T ss_pred --CceeEEeccEEEEccCCCCCCceEEcc--CC-CCCCCCcEEEEEcCEEccCC-ceEEec----CCCCCceEEEEecCC
Confidence 34799999998742 12 3221 11 12233468999999997643 345541 123456788888888
Q ss_pred eCC
Q 040962 151 SNV 153 (247)
Q Consensus 151 ~~~ 153 (247)
...
T Consensus 457 ~~~ 459 (537)
T PLN02506 457 SQL 459 (537)
T ss_pred CCe
Confidence 764
No 88
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=85.83 E-value=27 Score=33.52 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=87.0
Q ss_pred EEEccEEEEeeEEeCCCCc------EEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecC
Q 040962 5 NFVTNSRISGITSVNSKNA------HISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLS 78 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~~------~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s 78 (247)
...+++..++|+|.|.... .+.+ ..+...+.+|+|....|..- .. +..-..++|+|...=|-| .+
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy-----~~-~~Rqyy~~C~I~GtVDFI-FG- 384 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRV-NADLVALYRCTINGYQDTLY-----VH-SFRQFYRECDIYGTIDYI-FG- 384 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEE-cCccEEEEcceEecccchhc-----cC-CCceEEEeeEEeecccee-ec-
Confidence 4568899999999998542 3433 46889999999999876322 22 245789999999765654 33
Q ss_pred CcEeEEEEeeEEcCC---Ce--EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeEE
Q 040962 79 GSTNINVTDVTCGPG---HG--ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENIF 149 (247)
Q Consensus 79 ~~~nV~I~nc~~~~~---~g--i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni~ 149 (247)
.-...++||.+... .| -.| +.-++.....-....|.||++....... ..+++-|..-..-..+.|.+..
T Consensus 385 -~a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~ 462 (541)
T PLN02416 385 -NAAVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESY 462 (541)
T ss_pred -cceEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEecCCccccccccccccccCCCCCCccEEEEecc
Confidence 35799999998642 11 111 1111112233568999999998653110 1233333222445678888888
Q ss_pred EeCC
Q 040962 150 MSNV 153 (247)
Q Consensus 150 ~~~~ 153 (247)
|.+.
T Consensus 463 i~~~ 466 (541)
T PLN02416 463 IDDF 466 (541)
T ss_pred cCCe
Confidence 8764
No 89
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=85.68 E-value=17 Score=34.76 Aligned_cols=113 Identities=11% Similarity=0.043 Sum_probs=63.6
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCC
Q 040962 29 GCHKVSIDNIKITAPYQSPNTDGIKIG-DSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANE 107 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~ 107 (247)
..+++..+|++|.|.......-++-+. ..+...+++|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 380 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ--RQFYRECYIYGTVDFIFGN------- 380 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC--ceEEEeeEEeeccceEecc-------
Confidence 456777788888875321112223221 347788888888877776655542 4577888887665555553
Q ss_pred CcEEEEEEEeeEEeCCce----eEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 108 RNVHGLAVRNCTFRGTTN----GVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 108 ~~i~nI~v~ni~~~~~~~----gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+..... .-.|..........-..+.|.|++++..
T Consensus 381 ---a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 ---AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred ---cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecC
Confidence 345677777754310 1233322111112234678888888864
No 90
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=84.91 E-value=25 Score=33.94 Aligned_cols=114 Identities=11% Similarity=0.155 Sum_probs=64.8
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeeeec-CcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCCC
Q 040962 29 GCHKVSIDNIKITAPYQSPNTDGIKIG-DSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYANE 107 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~~ 107 (247)
..+++..+|++|.|.......-.+-+. ..+...+.+|.|....|-+-..+ ..-.+++|++.+.-.+=+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-------
Confidence 346777888888875421112223221 34778888888887777665554 34577888887665555553
Q ss_pred CcEEEEEEEeeEEeCCce----eEEEEEecCCCCceEEcEEEEeEEEeCCC
Q 040962 108 RNVHGLAVRNCTFRGTTN----GVRIKTWASPQANVASGFTFENIFMSNVE 154 (247)
Q Consensus 108 ~~i~nI~v~ni~~~~~~~----gi~ik~~~~~~~g~i~nI~f~ni~~~~~~ 154 (247)
-...|+||.+..... .-.|..........-..+.|.|++++...
T Consensus 416 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 ---AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ---ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 346777777764211 12333221111122245788888888743
No 91
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=84.87 E-value=23 Score=34.36 Aligned_cols=113 Identities=9% Similarity=0.114 Sum_probs=66.9
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.... +-.-++.+ ..+...+.+|.|....|-+-..++ .-.+++|++.+.-.+=+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~------ 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRV-GSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN------ 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc------
Confidence 457778888888885421 12223333 347788888888877777665553 3478888887665555542
Q ss_pred CCcEEEEEEEeeEEeCCce--e--EEEEEecCCCCceEEcEEEEeEEEeCCC
Q 040962 107 ERNVHGLAVRNCTFRGTTN--G--VRIKTWASPQANVASGFTFENIFMSNVE 154 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~~--g--i~ik~~~~~~~g~i~nI~f~ni~~~~~~ 154 (247)
-...|+||.++.... + -.|..+.......-..+.|.|+++....
T Consensus 431 ----a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 ----AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ----eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 456788888864310 1 1333322111122346788899887643
No 92
>PLN02314 pectinesterase
Probab=84.65 E-value=34 Score=33.19 Aligned_cols=80 Identities=10% Similarity=0.075 Sum_probs=44.5
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.... +-.-++.+ ..+...+.+|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~------ 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRS-GSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN------ 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC------
Confidence 446677777777775321 11112333 346677777777776666555442 3466777776554444442
Q ss_pred CCcEEEEEEEeeEEe
Q 040962 107 ERNVHGLAVRNCTFR 121 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~ 121 (247)
-...|+||.+.
T Consensus 434 ----a~avf~~c~i~ 444 (586)
T PLN02314 434 ----AAVVFQNCNIQ 444 (586)
T ss_pred ----ceeeeeccEEE
Confidence 34556666664
No 93
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=84.64 E-value=34 Score=33.07 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=86.8
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| .|
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDT-----LYTHS-LRQFYRECDIYGTVDFI---FG 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcc-----eEECC-CCEEEEeeEEeccccee---cc
Confidence 456889999999999743 233222 568899999999997763 33333 45799999998655554 33
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-.+.++||.+... .| |.-- | +.....-..+.|.||++....... ..+.+-|..-.....+.|.+.
T Consensus 408 ~a~avfq~C~i~~~~~~~~~~~~iTAq--~-r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s 484 (566)
T PLN02713 408 NAAVVFQNCNLYPRLPMQGQFNTITAQ--G-RTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQS 484 (566)
T ss_pred cceEEEeccEEEEecCCCCCcceeeec--C-CCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCcceEEEEec
Confidence 45899999998642 12 3221 1 112233568999999998753210 122232312244567888888
Q ss_pred EEeCCC
Q 040962 149 FMSNVE 154 (247)
Q Consensus 149 ~~~~~~ 154 (247)
.|.+.=
T Consensus 485 ~~~~~I 490 (566)
T PLN02713 485 YIDGLI 490 (566)
T ss_pred ccCCee
Confidence 887653
No 94
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=84.59 E-value=28 Score=32.32 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=11.2
Q ss_pred eEEecCCcEeEEEEeeEEcC
Q 040962 73 CIALLSGSTNINVTDVTCGP 92 (247)
Q Consensus 73 ~i~i~s~~~nV~I~nc~~~~ 92 (247)
++||......+.+.+|.|.+
T Consensus 230 AVALrv~GDra~fy~C~flG 249 (422)
T PRK10531 230 AVALRTDGDKVQIENVNILG 249 (422)
T ss_pred eEEEEEcCCcEEEEeeEEec
Confidence 45555444566666666554
No 95
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=84.21 E-value=25 Score=34.13 Aligned_cols=112 Identities=9% Similarity=0.095 Sum_probs=65.6
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..+++..+|++|.|.... +-.-.+.+. .+...+.+|.|....|-+-..++ .=.++||++.+.-.+=+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVG-ADHAVVYRCNIIGYQDTLYVHSN--RQFFRECDIYGTVDFIFGN------ 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeeEeccCcccccCCC--cEEEEecEEEeccceeccc------
Confidence 457788888888885421 122233333 47788888888877776655542 4577888887665555543
Q ss_pred CCcEEEEEEEeeEEeCCc----eeEEEEEecCCCCceEEcEEEEeEEEeCC
Q 040962 107 ERNVHGLAVRNCTFRGTT----NGVRIKTWASPQANVASGFTFENIFMSNV 153 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~----~gi~ik~~~~~~~g~i~nI~f~ni~~~~~ 153 (247)
-...|+||.+.... ..-.|..........-..+.|.|++++..
T Consensus 429 ----a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 ----AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ----ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 35677778776421 11233322211112234678888888764
No 96
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=84.17 E-value=41 Score=32.31 Aligned_cols=140 Identities=15% Similarity=0.069 Sum_probs=88.9
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|..-. .. ..-..++|+|...=|-| .+
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~-----~~-~Rqyy~~C~I~GtVDFI-FG-- 379 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMV-----HS-QRQFYRECYIYGTVDFI-FG-- 379 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhcc-----CC-CceEEEeeEEeeccceE-ec--
Confidence 456789999999999853 333332 468899999999998764322 22 35689999999665654 33
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-...+++|.+... .| |.-- | +.....-..+.|.||++....... ..+.+-|..-+....+.|-+.
T Consensus 380 ~a~avf~~C~i~~~~~~~~~~~~iTA~--~-r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t 456 (539)
T PLN02995 380 NAAAVFQNCIILPRRPLKGQANVITAQ--G-RADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQT 456 (539)
T ss_pred ccceEEeccEEEEecCCCCCcceEecC--C-CCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCcceEEEec
Confidence 34799999998642 12 2211 1 112233578999999998853211 122333322344567889888
Q ss_pred EEeCCCcc
Q 040962 149 FMSNVENP 156 (247)
Q Consensus 149 ~~~~~~~~ 156 (247)
.|.+.=.|
T Consensus 457 ~~~~~I~p 464 (539)
T PLN02995 457 YLDNVVSP 464 (539)
T ss_pred cccCcccc
Confidence 88765444
No 97
>PLN02304 probable pectinesterase
Probab=83.97 E-value=34 Score=31.27 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=85.3
Q ss_pred EEEccEEEEeeEEeCCCC---------cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceE
Q 040962 5 NFVTNSRISGITSVNSKN---------AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCI 74 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~---------~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i 74 (247)
...+++..++|+|.|... .++-+. ..+...+.+|.|....|. +-.. ...-.+++|+|.-.=|-|
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDT-----Ly~~-~gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDT-----LHDD-RGRHYFKDCYIQGSIDFI 232 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccce-----eEeC-CCCEEEEeeEEcccccEE
Confidence 446889999999999852 233222 468999999999998763 2222 246889999999665554
Q ss_pred EecCCcEeEEEEeeEEcCC-----------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEc
Q 040962 75 ALLSGSTNINVTDVTCGPG-----------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASG 142 (247)
Q Consensus 75 ~i~s~~~nV~I~nc~~~~~-----------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~n 142 (247)
.+ .-...+++|.+..- .| |.--+ +.....-.-..|.||++.+.. .++++= .-+....
T Consensus 233 -FG--~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~---Rt~~~~~~GfvF~~C~itg~g-~vyLGR----PW~pysr 301 (379)
T PLN02304 233 -FG--DARSLYENCRLISMANPVPPGSKSINGAVTAHG---RTSKDENTGFSFVNCTIGGTG-RIWLGR----AWRPYSR 301 (379)
T ss_pred -ec--cceEEEEccEEEEecCCcccccccCceEEEecC---CCCCCCCceEEEECCEEccCc-ceeecC----CCCCcce
Confidence 33 34789999998742 12 22111 112233467889999997643 344431 1234578
Q ss_pred EEEEeEEEeCC
Q 040962 143 FTFENIFMSNV 153 (247)
Q Consensus 143 I~f~ni~~~~~ 153 (247)
+.|.+..|.+.
T Consensus 302 vVf~~t~m~~~ 312 (379)
T PLN02304 302 VVFAYTSMTDI 312 (379)
T ss_pred EEEEecccCCE
Confidence 88988888864
No 98
>PLN02197 pectinesterase
Probab=83.94 E-value=31 Score=33.50 Aligned_cols=112 Identities=9% Similarity=0.080 Sum_probs=65.1
Q ss_pred ceecEEEEeEEEEcCCCC--CCCCeeeecCcccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcCCCeEEEEeccccCC
Q 040962 29 GCHKVSIDNIKITAPYQS--PNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGPGHGISVGSLGRYAN 106 (247)
Q Consensus 29 ~~~nv~i~n~~I~~~~~~--~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~~~gi~igs~g~~~~ 106 (247)
..++...+|++|.|.... +-.-++.+. ++...+.+|.|....|-+-..++ .-.++||++.+.-.+=+|.
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 432 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRVN-GDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGK------ 432 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEec-CCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccc------
Confidence 457788888888885321 222233333 47888888888887777666553 4578888887665555543
Q ss_pred CCcEEEEEEEeeEEeCCc--ee--EEEEEecCCC-CceEEcEEEEeEEEeCC
Q 040962 107 ERNVHGLAVRNCTFRGTT--NG--VRIKTWASPQ-ANVASGFTFENIFMSNV 153 (247)
Q Consensus 107 ~~~i~nI~v~ni~~~~~~--~g--i~ik~~~~~~-~g~i~nI~f~ni~~~~~ 153 (247)
....|+||.+.-.. .| -.|....... ...-..+.|.|++++..
T Consensus 433 ----a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 433 ----SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred ----eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecC
Confidence 23677788775321 01 1332211100 12224578888888864
No 99
>PLN02916 pectinesterase family protein
Probab=83.90 E-value=40 Score=32.03 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=88.2
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| .|
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG 344 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDT-----LFVHS-LRQFYRDCHIYGTIDFI---FG 344 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCce-----eEeCC-CCEEEEecEEeccccee---cc
Confidence 456789999999998843 333222 468899999999997763 32223 35788999999665554 33
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-...++||.+... .| |.--+ +.....-..+.|.||++....... ..+++-|..-+....+.|-+.
T Consensus 345 ~a~avFq~C~I~~~~~~~~~~g~ITAq~---r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t 421 (502)
T PLN02916 345 DAAVVFQNCDIFVRRPMDHQGNMITAQG---RDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKT 421 (502)
T ss_pred CceEEEecCEEEEecCCCCCcceEEecC---CCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEec
Confidence 45899999998642 12 22211 112233578999999998753210 112232322344578888888
Q ss_pred EEeCCCcc
Q 040962 149 FMSNVENP 156 (247)
Q Consensus 149 ~~~~~~~~ 156 (247)
.|.+.=.|
T Consensus 422 ~~~~~I~p 429 (502)
T PLN02916 422 DLDGLIDP 429 (502)
T ss_pred ccCCeEcC
Confidence 88875333
No 100
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=83.87 E-value=41 Score=32.13 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=88.1
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| .+
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI-FG-- 360 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDT-----LYTHT-MRQFYRECRITGTVDFI-FG-- 360 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCe-----eEeCC-CCEEEEeeEEeecccEE-ec--
Confidence 456789999999999853 333333 468899999999997663 33333 34678999999665654 33
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-...++||.+..- .| |.--+ +.....-....|.||++....... ..+.+-|..-+....+.|-+.
T Consensus 361 ~a~avf~~C~i~~~~~~~~~~~~iTAq~---r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t 437 (520)
T PLN02201 361 DATAVFQNCQILAKKGLPNQKNTITAQG---RKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQN 437 (520)
T ss_pred CceEEEEccEEEEecCCCCCCceEEecC---CCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEec
Confidence 34799999998741 22 33221 112234567999999997743211 012222312344678888888
Q ss_pred EEeCCCcc
Q 040962 149 FMSNVENP 156 (247)
Q Consensus 149 ~~~~~~~~ 156 (247)
.|.+.=.|
T Consensus 438 ~l~~~I~p 445 (520)
T PLN02201 438 YMSDAIRP 445 (520)
T ss_pred CcCCeEcc
Confidence 88865333
No 101
>PLN02314 pectinesterase
Probab=83.38 E-value=25 Score=34.12 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=38.9
Q ss_pred EEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCCc
Q 040962 6 FVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGS 80 (247)
Q Consensus 6 ~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~~ 80 (247)
..+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| + |.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDT-----Ly~~~-~rq~y~~C~I~GtvDFI-F--G~ 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDT-----LYAHS-NRQFYRDCDITGTIDFI-F--GN 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccch-----heeCC-CCEEEEeeEEEecccee-c--cC
Confidence 34566666666666532 122221 345666666666665542 21112 23566666666443433 2 22
Q ss_pred EeEEEEeeEEc
Q 040962 81 TNINVTDVTCG 91 (247)
Q Consensus 81 ~nV~I~nc~~~ 91 (247)
-...++||.+.
T Consensus 434 a~avf~~c~i~ 444 (586)
T PLN02314 434 AAVVFQNCNIQ 444 (586)
T ss_pred ceeeeeccEEE
Confidence 35666666664
No 102
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=83.10 E-value=43 Score=31.80 Aligned_cols=139 Identities=10% Similarity=0.031 Sum_probs=87.8
Q ss_pred EEEccEEEEeeEEeCCCCc----E--EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecC
Q 040962 5 NFVTNSRISGITSVNSKNA----H--ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLS 78 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~~----~--i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s 78 (247)
...+++..++|+|.|.... . +.+ ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| .+
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v-~~D~~~fy~c~~~G~QDT-----Ly~~~-~rqyy~~C~I~G~vDFI-FG- 337 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSI-TSDHSVLYRCSIAGYQDT-----LYAAA-LRQFYRECDIYGTIDFI-FG- 337 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEcceeecccch-----heeCC-CcEEEEeeEEEeccceE-ec-
Confidence 4567899999999998642 3 333 468999999999997663 22222 35689999999665654 33
Q ss_pred CcEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEE----EEEecCCCCceEEcEEEEe
Q 040962 79 GSTNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVR----IKTWASPQANVASGFTFEN 147 (247)
Q Consensus 79 ~~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~----ik~~~~~~~g~i~nI~f~n 147 (247)
.-...++||.+... .+ |.- .++ .....-..+.|.||++........ .+.+-|.+-+....+.|.+
T Consensus 338 -~a~avf~~C~i~~~~~~~~~~~~iTA--q~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~ 413 (497)
T PLN02698 338 -NAAAVFQNCYLFLRRPHGKSYNVILA--NGR-SDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVME 413 (497)
T ss_pred -ccceeecccEEEEecCCCCCceEEEe--cCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEe
Confidence 34689999998631 11 221 111 122335689999999987542111 1233332234456788888
Q ss_pred EEEeCCCcc
Q 040962 148 IFMSNVENP 156 (247)
Q Consensus 148 i~~~~~~~~ 156 (247)
..|...=.|
T Consensus 414 s~l~~~I~p 422 (497)
T PLN02698 414 SYIDDAIAE 422 (497)
T ss_pred cccCCcccC
Confidence 888765333
No 103
>PLN02197 pectinesterase
Probab=82.92 E-value=47 Score=32.24 Aligned_cols=142 Identities=10% Similarity=0.072 Sum_probs=88.3
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| + |
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDT-----Ly~~~-~Rqyy~~C~I~GtVDFI-F--G 431 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDT-----LYVNN-GRQFYRNIVVSGTVDFI-F--G 431 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcc-----eEecC-CCEEEEeeEEEeccccc-c--c
Confidence 456889999999999743 333333 468999999999997763 32222 45789999999665544 2 3
Q ss_pred cEeEEEEeeEEcCC---Ce--EEEEeccccCC-CCcEEEEEEEeeEEeCCcee----EEEEEecCCCCceEEcEEEEeEE
Q 040962 80 STNINVTDVTCGPG---HG--ISVGSLGRYAN-ERNVHGLAVRNCTFRGTTNG----VRIKTWASPQANVASGFTFENIF 149 (247)
Q Consensus 80 ~~nV~I~nc~~~~~---~g--i~igs~g~~~~-~~~i~nI~v~ni~~~~~~~g----i~ik~~~~~~~g~i~nI~f~ni~ 149 (247)
.-...++||.+... .| -.| +.-++.+ ...-..+.|.||++...... ...+++-|..-.....+.|-+..
T Consensus 432 ~a~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~ 510 (588)
T PLN02197 432 KSATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTE 510 (588)
T ss_pred ceeeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCCCCceEEEEecc
Confidence 34699999998632 12 111 2111111 12346799999999875421 12233433223456788888888
Q ss_pred EeCCCcc
Q 040962 150 MSNVENP 156 (247)
Q Consensus 150 ~~~~~~~ 156 (247)
|.+.=.|
T Consensus 511 ~~~~I~p 517 (588)
T PLN02197 511 IGDLIRP 517 (588)
T ss_pred cCCeecC
Confidence 8765333
No 104
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=82.70 E-value=46 Score=32.02 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=87.0
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. .++...+.+|.|....|. +-... ..-..++|+|.-.=|-| .|
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI---FG 390 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDT-----LYAHS-LRQFYRDSYITGTVDFI---FG 390 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecccc-----ceecC-CcEEEEeeEEEecccee---cc
Confidence 456889999999999753 333332 468999999999998763 22222 35689999999765654 33
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-...++||.+..- .+ |.-- |+ .+...-..+.|.||++....... ..+++-|..-.....+.|-+.
T Consensus 391 ~a~avfq~c~i~~~~~~~~~~~~iTAq--gr-~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s 467 (548)
T PLN02301 391 NAAVVFQNCKIVARKPMAGQKNMVTAQ--GR-TDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQS 467 (548)
T ss_pred cceeEEeccEEEEecCCCCCCceEEec--CC-CCCCCCCEEEEEeeEEecCccccccccccceeeecCCCCCceEEEEec
Confidence 45899999998642 12 3321 11 12234568999999998754210 112232322344567788888
Q ss_pred EEeCC
Q 040962 149 FMSNV 153 (247)
Q Consensus 149 ~~~~~ 153 (247)
.|...
T Consensus 468 ~l~~~ 472 (548)
T PLN02301 468 YIDDH 472 (548)
T ss_pred ccCCe
Confidence 87764
No 105
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=82.50 E-value=16 Score=31.27 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=65.6
Q ss_pred cEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEcc-CCceEEecC-----CcEeEEEEeeEEcC-CCe
Q 040962 23 AHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGT-GDDCIALLS-----GSTNINVTDVTCGP-GHG 95 (247)
Q Consensus 23 ~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~-~DD~i~i~s-----~~~nV~I~nc~~~~-~~g 95 (247)
..+.+....+.+|++++|.++.. .-.-|+.+.++ +.+|+|++|.. ..++|.+.. ...++.|++-.+.. ..|
T Consensus 89 qn~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G 166 (246)
T PF07602_consen 89 QNVTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTG 166 (246)
T ss_pred eeEEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcC
Confidence 34556667889999999999832 12347888776 99999999876 466776633 24566666666654 468
Q ss_pred EEEEeccccCCCCcEEEEEEEeeEEeCCceeEEEE
Q 040962 96 ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVRIK 130 (247)
Q Consensus 96 i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~ik 130 (247)
+++-.. ...+.| .++|-.+.+...||.+.
T Consensus 167 i~i~~~-----~~~~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 167 ISISDN-----AAPVEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred eEEEcc-----cCCccc-eeeccEEEeCCcCeEee
Confidence 888432 122333 34666666655577755
No 106
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=82.48 E-value=49 Score=32.01 Aligned_cols=142 Identities=13% Similarity=0.133 Sum_probs=87.5
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| .+
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFI-FG-- 414 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDT-----LYVHS-HRQFFRDCTVSGTVDFI-FG-- 414 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccch-----hccCC-CcEEEEeeEEecccceE-cc--
Confidence 356789999999999864 333332 468899999999997763 22222 45788999999665654 23
Q ss_pred cEeEEEEeeEEcCC---Ce--EEEEeccccCCCCcEEEEEEEeeEEeCCceeEE----EEEecCCCCceEEcEEEEeEEE
Q 040962 80 STNINVTDVTCGPG---HG--ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVR----IKTWASPQANVASGFTFENIFM 150 (247)
Q Consensus 80 ~~nV~I~nc~~~~~---~g--i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~----ik~~~~~~~g~i~nI~f~ni~~ 150 (247)
.-...++||.+... .| -.| +.-++.....-..+.|.||++........ .+.+-|..-.....+.|.+..|
T Consensus 415 ~a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i 493 (572)
T PLN02990 415 DAKVVLQNCNIVVRKPMKGQSCMI-TAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTI 493 (572)
T ss_pred CceEEEEccEEEEecCCCCCceEE-EeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCCCCCceEEEEeccc
Confidence 34799999998631 11 111 11111122335689999999987542111 1222231224457788888888
Q ss_pred eCCCcc
Q 040962 151 SNVENP 156 (247)
Q Consensus 151 ~~~~~~ 156 (247)
.+.=.|
T Consensus 494 ~~~I~p 499 (572)
T PLN02990 494 DDVIDP 499 (572)
T ss_pred CCeecc
Confidence 765333
No 107
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=82.20 E-value=14 Score=33.18 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=60.8
Q ss_pred eEEEEEccEEEEeeEEeCCC-------CcEEEEeceecEEEEeEEEEcCCCC-----------------CCCCeeeecCc
Q 040962 2 MVFNFVTNSRISGITSVNSK-------NAHISLYGCHKVSIDNIKITAPYQS-----------------PNTDGIKIGDS 57 (247)
Q Consensus 2 i~~~~~~nv~i~giti~n~~-------~~~i~~~~~~nv~i~n~~I~~~~~~-----------------~n~DGidi~~s 57 (247)
|.+..+.++.|++.++.--. .-++++++..++.|.+=.|.-..|+ .-.-|.|.+.+
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~gnr~~~~RygvHyM~t 202 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFKGNRFRDLRYGVHYMYT 202 (408)
T ss_pred EEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceecccchhheeeeEEEEec
Confidence 67888899999988886322 2468888888877766555443220 01225566666
Q ss_pred ccEEEEeeEEccCCceEEecCCcEeEEEEeeEEcC--CCeEEEE
Q 040962 58 KGIKITHSSIGTGDDCIALLSGSTNINVTDVTCGP--GHGISVG 99 (247)
Q Consensus 58 ~nV~I~n~~i~~~DD~i~i~s~~~nV~I~nc~~~~--~~gi~ig 99 (247)
.+.+|++...+..--+.++.- +++++|+|..-++ .||+-+-
T Consensus 203 ~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS~Gnrd~Gilln 245 (408)
T COG3420 203 NDSRISDNSSRDNRVGYALMY-SDRLKVSDNRSSGNRDHGILLN 245 (408)
T ss_pred cCcEeecccccCCcceEEEEE-eccEEEEcCcccCccccceeee
Confidence 666666655555555666665 7788888877665 3565553
No 108
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=80.86 E-value=57 Score=31.69 Aligned_cols=140 Identities=12% Similarity=0.133 Sum_probs=88.9
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-.. +..-..++|+|.-.=|-| .|
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFI---FG 427 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDT-----LYVH-SNRQFFRECDIYGTVDFI---FG 427 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcc-----cccC-CCcEEEEecEEEecccee---cc
Confidence 456889999999998853 333332 468899999999998763 2222 245789999999665544 33
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCcee----EEEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNG----VRIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~g----i~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-...++||.+..- .| |.--+ +.....-..+.|.||++...... -..+++-|..-+....+.|.+.
T Consensus 428 ~a~avfq~C~i~~~~~~~~~~~~ITAq~---r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s 504 (587)
T PLN02484 428 NAAVVLQNCSIYARKPMAQQKNTITAQN---RKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMS 504 (587)
T ss_pred cceeEEeccEEEEecCCCCCceEEEecC---CCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCCCceEEEEec
Confidence 45899999998641 12 32211 11223457899999999875321 0122333322345678888888
Q ss_pred EEeCCCcc
Q 040962 149 FMSNVENP 156 (247)
Q Consensus 149 ~~~~~~~~ 156 (247)
.|...=.|
T Consensus 505 ~i~~~I~p 512 (587)
T PLN02484 505 YMGDHIHP 512 (587)
T ss_pred ccCCeEcc
Confidence 88865333
No 109
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=79.81 E-value=57 Score=31.04 Aligned_cols=138 Identities=10% Similarity=0.056 Sum_probs=87.5
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. .++...+.+|.|....|. +-.. +..-..++|+|.-.=|-| . |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDT-----Ly~~-~~RqyyrdC~I~GtVDFI-F--G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDA-----LYPH-RDRQFYRECFITGTVDFI-C--G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcc-----eeeC-CCCEEEEeeEEeeccceE-e--c
Confidence 346788999999998853 333333 468899999999997763 3222 346789999999765655 2 3
Q ss_pred cEeEEEEeeEEcCC------CeEEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeEE
Q 040962 80 STNINVTDVTCGPG------HGISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENIF 149 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni~ 149 (247)
.-.+.++||.+..- .+ .| +.-++.....-..+.|.||++....... ..+++-|..-...+.+.|-+..
T Consensus 352 ~a~avFq~C~I~sr~~~~~~~~-~I-TAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~ 429 (509)
T PLN02488 352 NAAAVFQFCQIVARQPMMGQSN-VI-TAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSF 429 (509)
T ss_pred ceEEEEEccEEEEecCCCCCCE-EE-EeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEecc
Confidence 45899999998742 23 12 1111112233567999999998754211 1233333223445677888877
Q ss_pred EeCC
Q 040962 150 MSNV 153 (247)
Q Consensus 150 ~~~~ 153 (247)
|.+.
T Consensus 430 i~~~ 433 (509)
T PLN02488 430 IGDL 433 (509)
T ss_pred CCCe
Confidence 7764
No 110
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=78.40 E-value=13 Score=33.94 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=33.3
Q ss_pred CcccEEEEeeEEccCC--ceEEecCCcEeEEEEeeEEcCCCeEEEEec
Q 040962 56 DSKGIKITHSSIGTGD--DCIALLSGSTNINVTDVTCGPGHGISVGSL 101 (247)
Q Consensus 56 ~s~nV~I~n~~i~~~D--D~i~i~s~~~nV~I~nc~~~~~~gi~igs~ 101 (247)
+=.+|++.|+.+...| -++.+-+ ..++++.+|.|.+-+|..+.+.
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~-~t~~~~hgC~F~gf~g~cl~~~ 165 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHA-NTNTLFHGCSFFGFHGTCLESW 165 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEe-cceEEEEeeEEecCcceeEEEc
Confidence 3468999999998765 2444444 6899999999998777666543
No 111
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=78.11 E-value=66 Score=30.82 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=87.7
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-... ..-..++|+|.-.=|-| .|
T Consensus 302 v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT-----Ly~~~-~Rqyy~~C~IeGtVDFI---FG 372 (530)
T PLN02933 302 VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDT-----LYVHS-AKQFYRECDIYGTIDFI---FG 372 (530)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccc-----cccCC-CceEEEeeEEeccccee---cc
Confidence 456889999999998853 333333 468899999999997763 22222 35689999999664544 33
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeEE----EEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGVR----IKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi~----ik~~~~~~~g~i~nI~f~ni 148 (247)
.-...+++|.+..- .| |.--+ +.....-..+.|.||++........ .+.+-|..-+....+.|.+.
T Consensus 373 ~a~avFq~C~i~~~~~~~~~~~~iTAq~---r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s 449 (530)
T PLN02933 373 NAAVVFQNCSLYARKPNPNHKIAFTAQS---RNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKS 449 (530)
T ss_pred CceEEEeccEEEEeccCCCCceEEEecC---CCCCCCCceEEEEeeEEecCCcccccccccceEeccCCCCCceEEEEec
Confidence 34789999998631 12 22211 1122334689999999987432111 12222322344678889898
Q ss_pred EEeCCCcc
Q 040962 149 FMSNVENP 156 (247)
Q Consensus 149 ~~~~~~~~ 156 (247)
.|.+.=.|
T Consensus 450 ~l~~~I~p 457 (530)
T PLN02933 450 FIDDLIHP 457 (530)
T ss_pred ccCCeecc
Confidence 88875333
No 112
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=74.39 E-value=88 Score=30.41 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=86.4
Q ss_pred EEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecCC
Q 040962 5 NFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSG 79 (247)
Q Consensus 5 ~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s~ 79 (247)
...+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-..+ ..-..++|+|.-.=|-| .|
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDT-----Ly~~~-~rq~y~~c~I~GtvDFI---FG 429 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDT-----LYVHS-NRQFFVKCHITGTVDFI---FG 429 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccch-----hccCC-CcEEEEeeEEeecccee---cc
Confidence 346789999999999853 333332 568899999999997763 22222 45689999999775655 23
Q ss_pred cEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEeE
Q 040962 80 STNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFENI 148 (247)
Q Consensus 80 ~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~ni 148 (247)
.-.+.++||.+... .+ |.-- | +.+...-..+.|.||++....... ..+++-|..-...+.+.|-+.
T Consensus 430 ~a~avfq~c~i~~r~~~~~~~~~iTAq--g-r~~~~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s 506 (587)
T PLN02313 430 NAAAVLQDCDINARRPNSGQKNMVTAQ--G-RSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQS 506 (587)
T ss_pred ceeEEEEccEEEEecCCCCCcceEEec--C-CCCCCCCceEEEEecEEecCCccccccccchhhccCCCCCCccEEEEec
Confidence 45899999998732 12 2221 1 112234578999999998754211 122233322234566777777
Q ss_pred EEeCC
Q 040962 149 FMSNV 153 (247)
Q Consensus 149 ~~~~~ 153 (247)
.|.+.
T Consensus 507 ~i~~~ 511 (587)
T PLN02313 507 DISDV 511 (587)
T ss_pred ccCCe
Confidence 77764
No 113
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=73.12 E-value=91 Score=29.98 Aligned_cols=141 Identities=9% Similarity=0.062 Sum_probs=88.8
Q ss_pred EEEEccEEEEeeEEeCCCC----cEEEEe-ceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEccCCceEEecC
Q 040962 4 FNFVTNSRISGITSVNSKN----AHISLY-GCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLS 78 (247)
Q Consensus 4 ~~~~~nv~i~giti~n~~~----~~i~~~-~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~i~s 78 (247)
....+++..++|+|.|... ..+-+. ..+...+.+|.|....|. +-.. +..-..++|+|.-.=|-| ++
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDT-----Ly~~-~~rq~y~~c~I~GtVDFI-FG- 380 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDT-----LYVH-SLRQFYRECDIYGTVDFI-FG- 380 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcc-----cccC-CCcEEEEeeEEeeccceE-ee-
Confidence 3456889999999999753 233332 468899999999998763 2222 245789999999765655 33
Q ss_pred CcEeEEEEeeEEcCC------Ce-EEEEeccccCCCCcEEEEEEEeeEEeCCceeE----EEEEecCCCCceEEcEEEEe
Q 040962 79 GSTNINVTDVTCGPG------HG-ISVGSLGRYANERNVHGLAVRNCTFRGTTNGV----RIKTWASPQANVASGFTFEN 147 (247)
Q Consensus 79 ~~~nV~I~nc~~~~~------~g-i~igs~g~~~~~~~i~nI~v~ni~~~~~~~gi----~ik~~~~~~~g~i~nI~f~n 147 (247)
.-...++||.+... .+ |.--+ +.....-..+.|.||++.....-. ..+++-|..-.....+.|-+
T Consensus 381 -~a~avfq~c~i~~r~~~~~~~~~iTA~~---r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~ 456 (538)
T PLN03043 381 -NAAAIFQNCNLYARKPMANQKNAFTAQG---RTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQ 456 (538)
T ss_pred -cceeeeeccEEEEecCCCCCCceEEecC---CCCCCCCceEEEEecEEecCCcccccccccceeccCCCCCCceEEEEe
Confidence 34799999998641 12 33321 112233568999999998753210 11233332224457788888
Q ss_pred EEEeCCCcc
Q 040962 148 IFMSNVENP 156 (247)
Q Consensus 148 i~~~~~~~~ 156 (247)
..|.+.=.|
T Consensus 457 s~i~~~I~p 465 (538)
T PLN03043 457 SYIGDLIQP 465 (538)
T ss_pred cccCCeecc
Confidence 888765333
No 114
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=70.95 E-value=14 Score=22.19 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=27.3
Q ss_pred EEEeceecEEEEeEEEEcCCCCCCCCeeeecCcccEEEEeeEEcc
Q 040962 25 ISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGT 69 (247)
Q Consensus 25 i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~ 69 (247)
+.++.|.+.+|++-++... .|||.+..+.+-+|++..+..
T Consensus 2 I~l~~s~~~~i~~N~i~~~-----~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNN-----SYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeCC-----CCEEEEEeCCCCEeECCEEEc
Confidence 5666677777777777663 347887777777777766653
No 115
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=64.38 E-value=92 Score=26.70 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=62.0
Q ss_pred eeecCcccEEEEeeEEccCCc----eEEecCCcEeEEEEeeEEcC--CCeEEEEeccccCCCCcEEEEEEEeeEEeCCce
Q 040962 52 IKIGDSKGIKITHSSIGTGDD----CIALLSGSTNINVTDVTCGP--GHGISVGSLGRYANERNVHGLAVRNCTFRGTTN 125 (247)
Q Consensus 52 idi~~s~nV~I~n~~i~~~DD----~i~i~s~~~nV~I~nc~~~~--~~gi~igs~g~~~~~~~i~nI~v~ni~~~~~~~ 125 (247)
+-+....+..|+..+|.+.+. +|.+.+ .+.+|+||+|.. .+|+.+-... ....+.++.+++-.++....
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Ies--s~~tI~Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~ 165 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIARGTGIWIES--SSPTIANNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYFNKT 165 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCCcceEEEEec--CCcEEEeeEEECCccccEEEEeee---cCCcccceEeecceEEecCc
Confidence 344445677888888887743 666665 389999999986 3587763221 13467888888888888778
Q ss_pred eEEEEEecCCCCceEEcEEEEeEEEeCCCccEEEE
Q 040962 126 GVRIKTWASPQANVASGFTFENIFMSNVENPIVID 160 (247)
Q Consensus 126 gi~ik~~~~~~~g~i~nI~f~ni~~~~~~~~i~i~ 160 (247)
|+.+..... + +.| .++|-.+++-..+|.+.
T Consensus 166 Gi~i~~~~~---~-~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 166 GISISDNAA---P-VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred CeEEEcccC---C-ccc-eeeccEEEeCCcCeEee
Confidence 888875442 2 222 22444444433465544
No 116
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=64.30 E-value=1.2e+02 Score=28.14 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=58.2
Q ss_pred EccEEEEeeEEeCC--CC-----cEEEE--eceecEEEEeEEEEcCCCCCCCC--eeee----cCcccEEEEeeEEccC-
Q 040962 7 VTNSRISGITSVNS--KN-----AHISL--YGCHKVSIDNIKITAPYQSPNTD--GIKI----GDSKGIKITHSSIGTG- 70 (247)
Q Consensus 7 ~~nv~i~giti~n~--~~-----~~i~~--~~~~nv~i~n~~I~~~~~~~n~D--Gidi----~~s~nV~I~n~~i~~~- 70 (247)
.+.++|+||.|++. |. +.... ..|.+.++.++.|..-.. ++.+ ...+ ...+|-+|++|.|...
T Consensus 66 G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~ 144 (425)
T PF14592_consen 66 GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQGKT 144 (425)
T ss_dssp SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE---
T ss_pred eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeeccc
Confidence 58899999999864 32 12222 257899999999987321 1111 1222 2458999999999864
Q ss_pred --CceEEec----C---CcEeEEEEeeEEcC-----CC---eEEEEeccccCCCCcEEEEEEEeeEEeCCc---eeEEEE
Q 040962 71 --DDCIALL----S---GSTNINVTDVTCGP-----GH---GISVGSLGRYANERNVHGLAVRNCTFRGTT---NGVRIK 130 (247)
Q Consensus 71 --DD~i~i~----s---~~~nV~I~nc~~~~-----~~---gi~igs~g~~~~~~~i~nI~v~ni~~~~~~---~gi~ik 130 (247)
+--+.+. + -...-+|+.++|.. +. .|+||.-.. +-.-.+.+|++..|.... .-|.+|
T Consensus 145 ~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~---S~~~s~t~Ve~NlFe~cdGE~EIISvK 221 (425)
T PF14592_consen 145 NRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHS---SMSDSNTTVENNLFERCDGEVEIISVK 221 (425)
T ss_dssp SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT----B-----EEES-EEEEE-SSSEEEEEE
T ss_pred cCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccc---cccccceeeecchhhhcCCceeEEEee
Confidence 2234433 1 13456789998862 22 499986431 222356666666666532 456666
Q ss_pred EecCCCCceEEcEEEEeE
Q 040962 131 TWASPQANVASGFTFENI 148 (247)
Q Consensus 131 ~~~~~~~g~i~nI~f~ni 148 (247)
+. ...+++=+|.++
T Consensus 222 S~----~N~ir~Ntf~es 235 (425)
T PF14592_consen 222 SS----DNTIRNNTFRES 235 (425)
T ss_dssp SB----T-EEES-EEES-
T ss_pred cC----CceEeccEEEec
Confidence 53 244444444443
No 117
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=59.89 E-value=27 Score=31.21 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=6.5
Q ss_pred eecEEEEeEEEEcC
Q 040962 30 CHKVSIDNIKITAP 43 (247)
Q Consensus 30 ~~nv~i~n~~I~~~ 43 (247)
.+.+.++||++...
T Consensus 220 gDka~frnv~llg~ 233 (405)
T COG4677 220 GDKAIFRNVNLLGN 233 (405)
T ss_pred CCceeeeeeeEeec
Confidence 34444444444443
No 118
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=59.02 E-value=1.1e+02 Score=25.73 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=76.6
Q ss_pred EccEEEEeeEEeCCCCcEEEEeceecEEEEeEEEEcCCCCCCCCeeeecCcc-cEEEEeeEEccCCceEEecCCcEeEEE
Q 040962 7 VTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSK-GIKITHSSIGTGDDCIALLSGSTNINV 85 (247)
Q Consensus 7 ~~nv~i~giti~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~n~DGidi~~s~-nV~I~n~~i~~~DD~i~i~s~~~nV~I 85 (247)
=+..+|+++.|-.+...++|... +-+|+|+....- -.|++.+.+.. .++|.+.-....+|=|-=-.+.-.+.|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I 133 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTI 133 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEE
Confidence 46778899988888889999987 677777776552 24677777655 788888887777664433333557888
Q ss_pred EeeEEcCCCeEEEEeccccCCC-CcEEEEEEEeeEEeCCceeEEEEEecCCCCceEEcEEEEe
Q 040962 86 TDVTCGPGHGISVGSLGRYANE-RNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFEN 147 (247)
Q Consensus 86 ~nc~~~~~~gi~igs~g~~~~~-~~i~nI~v~ni~~~~~~~gi~ik~~~~~~~g~i~nI~f~n 147 (247)
+|.+.. ..|--.-|-|.-... +.-+.|.+++........-..|-...+ +...|+++..+.
T Consensus 134 ~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 134 KNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp EEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred EeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 885543 234223343322221 234567777665543332344444444 356666665554
No 119
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=55.82 E-value=16 Score=18.30 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.7
Q ss_pred EEEEeeEEc
Q 040962 83 INVTDVTCG 91 (247)
Q Consensus 83 V~I~nc~~~ 91 (247)
++|++|.+.
T Consensus 4 ~~i~~n~i~ 12 (26)
T smart00710 4 VTIENNTIR 12 (26)
T ss_pred EEEECCEEE
Confidence 344444443
No 120
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=33.30 E-value=1.5e+02 Score=26.76 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=23.3
Q ss_pred cccEEEEeeEEccCCceEEecCC----------cEeEEEEeeEEcCCCeEEEEe
Q 040962 57 SKGIKITHSSIGTGDDCIALLSG----------STNINVTDVTCGPGHGISVGS 100 (247)
Q Consensus 57 s~nV~I~n~~i~~~DD~i~i~s~----------~~nV~I~nc~~~~~~gi~igs 100 (247)
.+.+.++||.+....|-+-++.. .-.-+++||.+.+.-.+-+|+
T Consensus 220 gDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvDfIfGs 273 (405)
T COG4677 220 GDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVDFIFGS 273 (405)
T ss_pred CCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccceEEecc
Confidence 35666666666655555555442 112345666665544555554
No 121
>PF12251 zf-SNAP50_C: snRNA-activating protein of 50kDa MW C terminal; InterPro: IPR022042 This domain family is found in eukaryotes, and is typically between 196 and 207 amino acids in length. There is a conserved CEH sequence motif. SNAP50 is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.
Probab=25.89 E-value=1.1e+02 Score=25.09 Aligned_cols=39 Identities=10% Similarity=0.271 Sum_probs=29.9
Q ss_pred EccEEEEeeEEe-CCCCcEEEEeceec-EEEEeEEEEcCCC
Q 040962 7 VTNSRISGITSV-NSKNAHISLYGCHK-VSIDNIKITAPYQ 45 (247)
Q Consensus 7 ~~nv~i~giti~-n~~~~~i~~~~~~n-v~i~n~~I~~~~~ 45 (247)
-++.++.+|+++ ..|.+-+|--+|++ +.++++++..+.+
T Consensus 81 m~~~~f~dL~irlG~py~y~HqG~CEH~ivf~diRl~~~~d 121 (196)
T PF12251_consen 81 MEDTRFNDLNIRLGQPYLYCHQGNCEHLIVFSDIRLLHPDD 121 (196)
T ss_pred ccceEEeccEEccCCCEEEEEcCCccEEEEEEeeEeecCcc
Confidence 456777777774 66777888888887 6788888888765
No 122
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=21.34 E-value=3.7e+02 Score=25.06 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=19.5
Q ss_pred cccEEEEeeEEccCC---ceEEecCCcEeEEEEeeEEcCCC-eEEEE
Q 040962 57 SKGIKITHSSIGTGD---DCIALLSGSTNINVTDVTCGPGH-GISVG 99 (247)
Q Consensus 57 s~nV~I~n~~i~~~D---D~i~i~s~~~nV~I~nc~~~~~~-gi~ig 99 (247)
..+.+|++..+..-| .-|++|| + +-+|++-+|..+. +|.+-
T Consensus 198 ~s~t~Ve~NlFe~cdGE~EIISvKS-~-~N~ir~Ntf~es~G~ltlR 242 (425)
T PF14592_consen 198 DSNTTVENNLFERCDGEVEIISVKS-S-DNTIRNNTFRESQGSLTLR 242 (425)
T ss_dssp ----EEES-EEEEE-SSSEEEEEES-B-T-EEES-EEES-SSEEEEE
T ss_pred ccceeeecchhhhcCCceeEEEeec-C-CceEeccEEEeccceEEEe
Confidence 357777777776543 4788887 3 3445555555544 36653
Done!